Psyllid ID: psy12303

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480
Protein Sequence
MHTTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHcccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcHHHHHcccccccccEEEEEcccccHHHHHHHHHcccccccEEEEEccccccccHHHHHHHHHHHHHccccEEEEEEEcccccccccccHHHHHHHHHHcccEEEEEHHHHHHccccccccccccccccccccccccccccccccccccEEEEEcccHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccEEEEEcccccccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHcccHcccccccHHHHHHHHHHHcccccccccccHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEcccHHHHHHHHHHHHHHHHHHHHHHccHHHcccHEEEEEccHHcHHHHHHHHHHccccccEEEEcccccccccHHHHHHHHHHHHHccccEEEEEEEcccccccccccHHHHHHHHHHcccEEEEEcHHccccEEcHHHccccccccEEcccEccccccEEEEEcccEEEEEcccHHHHHHccccHHHHHcccccccccccccccEccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MHTTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMldldipekglplQKLIDDCFTTLkyqvrtghpmfmnqlscgLDVVSMAGEWLIATANtnmftyeiapVFILMETVVLEKMRQIIGwqggdsilapggsiSNLYAFLAARHKmfptykekglsaiKGQLVMftsdqchysvRSCAAVcglgtdncvevpsdkrgrlipSELERLVLERkakgdipffvnctsgttvlgafdpIEEIADICQKYNMWLHvdaawggglllskkyrhprltgieradsvtwnphklmgtllqcstihfkqdglLISCNQMSAEYLFMQDKlydvrydtgdkviqcgrHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSmpdkfylilepemvnvsfwylptrvrnmphekrlNILGEITPILKGRMMQAGTmmvgyqplndlpnFFRNIISSAAVTEGDIDFLLTEMDRLGHDL
Flexible Loop (DISEMBL)
MHTTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLgtdncvevpsdkrgrlipSELERLVLErkakgdipffvnCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIeradsvtwnpHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRvrnmphekrlnILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL
Low Complexity Region (SEG)
MHTTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL
Disordered region (IsUnstruct)
*****TFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTE********
Disordered Region (DISOPRED)
**TTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD*
Disordered Region (DISEMBL)
MHTTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL
Disordered Region (DISPRO)
MHTTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH*L
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHTTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	480	2.2.26 [Sep-21-2011]
P20228	510	Glutamate decarboxylase O	yes	N/A	0.993	0.935	0.748	0.0
Q5IS68	594	Glutamate decarboxylase 1	yes	N/A	0.987	0.797	0.569	1e-166
Q99259	594	Glutamate decarboxylase 1	yes	N/A	0.987	0.797	0.567	1e-165
P48319	594	Glutamate decarboxylase 1	yes	N/A	0.987	0.797	0.569	1e-165
P14748	594	Glutamate decarboxylase 1	N/A	N/A	0.987	0.797	0.564	1e-165
A0PA85	594	Glutamate decarboxylase 1	yes	N/A	0.987	0.797	0.564	1e-165
P18088	593	Glutamate decarboxylase 1	yes	N/A	0.987	0.799	0.564	1e-164
Q0VCA1	594	Glutamate decarboxylase 1	yes	N/A	0.987	0.797	0.564	1e-164
P48318	593	Glutamate decarboxylase 1	yes	N/A	0.987	0.799	0.560	1e-164
Q5R7S7	594	Glutamate decarboxylase 1	yes	N/A	0.987	0.797	0.562	1e-163

>sp|P20228|DCE_DROME Glutamate decarboxylase OS=Drosophila melanogaster GN=Gad1 PE=2 SV=2

 Score =  783 bits (2021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/478 (74%), Positives = 418/478 (87%), Gaps = 1/478 (0%)

Query: 4   TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTT 63
           T  FL +++++LL+++K +NDRNEKVL F+HP +MK +LDLD+P++ LPLQ+LI+DC TT
Sbjct: 33  TREFLLKVIDVLLDFVKATNDRNEKVLDFHHPEDMKRLLDLDVPDRALPLQQLIEDCATT 92

Query: 64  LKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQ 123
           LKYQV+TGHP F NQLS GLD++SMAGEWL ATANTNMFTYEIAPVFILME VVL KMR+
Sbjct: 93  LKYQVKTGHPHFFNQLSNGLDLISMAGEWLTATANTNMFTYEIAPVFILMENVVLTKMRE 152

Query: 124 IIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS 183
           IIGW GGDSILAPGGSISNLYAFLAARHKMFP YKE G   + G LVMFTSDQCHYS++S
Sbjct: 153 IIGWSGGDSILAPGGSISNLYAFLAARHKMFPNYKEHGSVGLPGTLVMFTSDQCHYSIKS 212

Query: 184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPI 243
           CAAVCGLGTD+C+ VPSD+ G++I SELERL+LERKAKGDIPFFVN T+GTTVLGAFD I
Sbjct: 213 CAAVCGLGTDHCIVVPSDEHGKMITSELERLILERKAKGDIPFFVNATAGTTVLGAFDDI 272

Query: 244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCST 303
             IADICQKYN W+H+DAAWGGGLL+S+K+RHPR TG+ERADSVTWNPHKLMG LLQCST
Sbjct: 273 NTIADICQKYNCWMHIDAAWGGGLLMSRKHRHPRFTGVERADSVTWNPHKLMGALLQCST 332

Query: 304 IHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEG 363
           IHFK+DGLLISCNQMSAEYLFM DK YD+ YDTGDKVIQCGRHNDIFKLWLQWRAKG EG
Sbjct: 333 IHFKEDGLLISCNQMSAEYLFMTDKQYDISYDTGDKVIQCGRHNDIFKLWLQWRAKGTEG 392

Query: 364 FEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNI-LG 422
           FE+Q DRLMEL +Y +K+I+   D+F+LILEPE VNVSFWY+P R+R +PH+ +  + LG
Sbjct: 393 FEQQQDRLMELVQYQLKRIREQSDRFHLILEPECVNVSFWYVPKRLRGVPHDAKKEVELG 452

Query: 423 EITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL 480
           +I PI+KGRMMQ GT+MVGYQP +  PNFFR+IISSAAV E D+DF+L E+ RLG DL
Sbjct: 453 KICPIIKGRMMQKGTLMVGYQPDDRRPNFFRSIISSAAVNEADVDFMLDEIHRLGDDL 510

Catalyzes the production of GABA.
Drosophila melanogaster (taxid: 7227)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 5

>sp|Q5IS68|DCE1_PANTR Glutamate decarboxylase 1 OS=Pan troglodytes GN=GAD1 PE=2 SV=1

 Score =  584 bits (1505), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 276/485 (56%), Positives = 367/485 (75%), Gaps = 11/485 (2%)

Query: 4   TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEM-KAM--LDLDIPEKGLPLQKLIDDC 60
           T  FL ++V+ILLNY++++ DR+ KVL F+HP ++ + M   +L++ +    L++++ DC
Sbjct: 113 TVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 172

Query: 61  FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
             TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct: 173 RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 232

Query: 121 MRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
           MR+IIGW  + GD I +PGG+ISN+Y+ +AAR+K FP  K KG++A+  +LV+FTS+Q H
Sbjct: 233 MREIIGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP-KLVLFTSEQSH 291

Query: 179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
           YS++   A  G GTDN + +  ++RG++IP++ E  +LE K KG +PF+VN T+GTTV G
Sbjct: 292 YSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYG 351

Query: 239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
           AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L GIERA+SVTWNPHK+MG L
Sbjct: 352 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLNGIERANSVTWNPHKMMGVL 410

Query: 299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
           LQCS I  K+ G+L  CNQM A YLF  DK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct: 411 LQCSAILIKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 470

Query: 359 KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPHE- 415
           KG  GFE QI++ +ELAEY+  KIK+  ++F ++   EPE  NV FWY+P  +R +P   
Sbjct: 471 KGTVGFESQINKCLELAEYLYAKIKNR-EEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSP 529

Query: 416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR 475
           +R   L ++ P +K  MM++GT MVGYQP  D  NFFR +IS+ A T+ DIDFL+ E++R
Sbjct: 530 QRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 589

Query: 476 LGHDL 480
           LG DL
Sbjct: 590 LGQDL 594

Catalyzes the production of GABA.

Pan troglodytes (taxid: 9598)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q99259|DCE1_HUMAN Glutamate decarboxylase 1 OS=Homo sapiens GN=GAD1 PE=1 SV=1

 Score =  582 bits (1501), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 275/485 (56%), Positives = 367/485 (75%), Gaps = 11/485 (2%)

Query: 4   TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEM-KAM--LDLDIPEKGLPLQKLIDDC 60
           T  FL ++V+ILLNY++++ DR+ KVL F+HP ++ + M   +L++ +    L++++ DC
Sbjct: 113 TVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 172

Query: 61  FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
             TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct: 173 RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 232

Query: 121 MRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
           MR+I+GW  + GD I +PGG+ISN+Y+ +AAR+K FP  K KG++A+  +LV+FTS+Q H
Sbjct: 233 MREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP-KLVLFTSEQSH 291

Query: 179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
           YS++   A  G GTDN + +  ++RG++IP++ E  +LE K KG +PF+VN T+GTTV G
Sbjct: 292 YSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYG 351

Query: 239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
           AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L GIERA+SVTWNPHK+MG L
Sbjct: 352 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLNGIERANSVTWNPHKMMGVL 410

Query: 299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
           LQCS I  K+ G+L  CNQM A YLF  DK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct: 411 LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 470

Query: 359 KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPHE- 415
           KG  GFE QI++ +ELAEY+  KIK+  ++F ++   EPE  NV FWY+P  +R +P   
Sbjct: 471 KGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSP 529

Query: 416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR 475
           +R   L ++ P +K  MM++GT MVGYQP  D  NFFR +IS+ A T+ DIDFL+ E++R
Sbjct: 530 QRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 589

Query: 476 LGHDL 480
           LG DL
Sbjct: 590 LGQDL 594

Catalyzes the production of GABA.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P48319|DCE1_PIG Glutamate decarboxylase 1 OS=Sus scrofa GN=GAD1 PE=2 SV=1

 Score =  581 bits (1498), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 276/485 (56%), Positives = 366/485 (75%), Gaps = 11/485 (2%)

Query: 4   TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEM-KAM--LDLDIPEKGLPLQKLIDDC 60
           T  FL ++V+ILLNY++++ DR+ KVL F+HP ++ + M   +L++ +    L++++ DC
Sbjct: 113 TVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 172

Query: 61  FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
             TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct: 173 RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 232

Query: 121 MRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
           MR+I+GW  + GD I +PGG+ISN+Y+ +AAR+K FP  K KG++A+  +LV+FTS+  H
Sbjct: 233 MREIVGWSNKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP-KLVLFTSEHSH 291

Query: 179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
           YS++   A  G GTDN + +  ++RG++IP++LE  +LE K KG IP +VN T+GTTV G
Sbjct: 292 YSIKKAGAALGFGTDNVILIKCNERGKIIPADLEAKILEAKQKGYIPLYVNATAGTTVYG 351

Query: 239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
           AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L+GIERADSVTWNPHK+MG L
Sbjct: 352 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLSGIERADSVTWNPHKMMGVL 410

Query: 299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
           LQCS I  K+ G+L  CNQM A YLF  DK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct: 411 LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 470

Query: 359 KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPHE- 415
           KG  GFE QI++ +ELAEY+  KIK+  ++F ++   EPE  NV FWY+P  +R +P   
Sbjct: 471 KGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFDGEPEHTNVCFWYIPQSLRGVPDSP 529

Query: 416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR 475
           +R   L  + P +K  MM++GT MVGYQP  D  NFFR +IS+ A T+ DIDFL+ E++R
Sbjct: 530 ERREKLHRVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 589

Query: 476 LGHDL 480
           LG DL
Sbjct: 590 LGQDL 594

Catalyzes the production of GABA.

Sus scrofa (taxid: 9823)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P14748|DCE1_FELCA Glutamate decarboxylase 1 OS=Felis catus GN=GAD1 PE=2 SV=3

 Score =  580 bits (1495), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 274/485 (56%), Positives = 366/485 (75%), Gaps = 11/485 (2%)

Query: 4   TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEM-KAM--LDLDIPEKGLPLQKLIDDC 60
           T  FL ++V+ILLNY++++ DR+ KVL F+HP ++ + M   +L++ +    L++++ DC
Sbjct: 113 TVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 172

Query: 61  FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
             TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct: 173 RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 232

Query: 121 MRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
           MR+I+GW  + GD I +PGG+ISN+Y+ +AAR+K FP  K KG++A+  +LV+FTS+  H
Sbjct: 233 MREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKFFPEVKTKGMAAVP-KLVLFTSEHSH 291

Query: 179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
           YS++   A  G GTDN + +  ++RG++IP++LE  +LE K KG +P +VN T+GTTV G
Sbjct: 292 YSIKKAGAALGFGTDNVILIKCNERGKIIPADLEAKILEAKQKGYVPLYVNATAGTTVYG 351

Query: 239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
           AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L+GIERA+SVTWNPHK+MG L
Sbjct: 352 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLSGIERANSVTWNPHKMMGVL 410

Query: 299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
           LQCS I  K+ G+L  CNQM A YLF  DK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct: 411 LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 470

Query: 359 KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPHE- 415
           KG  GFE QI++ +ELAEY+  KIK+  ++F ++   EPE  NV FWY+P  +R +P   
Sbjct: 471 KGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFDGEPEHTNVCFWYIPQSLRGIPDSP 529

Query: 416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR 475
           +R   L  + P +K  MM++GT MVGYQP  D  NFFR +IS+ A T+ DIDFL+ E++R
Sbjct: 530 ERREKLHRVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 589

Query: 476 LGHDL 480
           LG DL
Sbjct: 590 LGQDL 594

Catalyzes the production of GABA.

Felis catus (taxid: 9685)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|A0PA85|DCE1_CANFA Glutamate decarboxylase 1 OS=Canis familiaris GN=GAD1 PE=2 SV=1

 Score =  580 bits (1495), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 274/485 (56%), Positives = 366/485 (75%), Gaps = 11/485 (2%)

Query: 4   TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEM-KAM--LDLDIPEKGLPLQKLIDDC 60
           T  FL ++V+ILLNY++++ DR+ KVL F+HP ++ + M   +L++ +    L++++ DC
Sbjct: 113 TVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 172

Query: 61  FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
             TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct: 173 RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 232

Query: 121 MRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
           MR+I+GW  + GD I +PGG+ISN+Y+ +AAR+K FP  K KG++A+  +LV+FTS+  H
Sbjct: 233 MREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKFFPEVKTKGMAAVP-KLVLFTSEHSH 291

Query: 179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
           YS++   A  G GTDN + +  ++RG++IP++LE  +LE K KG +P +VN T+GTTV G
Sbjct: 292 YSIKKAGAALGFGTDNVILIKCNERGKIIPADLEAKILEAKQKGYVPLYVNATAGTTVYG 351

Query: 239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
           AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L+GIERA+SVTWNPHK+MG L
Sbjct: 352 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLSGIERANSVTWNPHKMMGVL 410

Query: 299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
           LQCS I  K+ G+L  CNQM A YLF  DK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct: 411 LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 470

Query: 359 KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPHE- 415
           KG  GFE QI++ +ELAEY+  KIK+  ++F ++   EPE  NV FWY+P  +R +P   
Sbjct: 471 KGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFDGEPEHTNVCFWYIPQSLRGIPDSP 529

Query: 416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR 475
           +R   L  + P +K  MM++GT MVGYQP  D  NFFR +IS+ A T+ DIDFL+ E++R
Sbjct: 530 ERREKLHRVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 589

Query: 476 LGHDL 480
           LG DL
Sbjct: 590 LGQDL 594

Catalyzes the production of GABA.

Canis familiaris (taxid: 9615)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P18088|DCE1_RAT Glutamate decarboxylase 1 OS=Rattus norvegicus GN=Gad1 PE=2 SV=1

 Score =  578 bits (1491), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 274/485 (56%), Positives = 366/485 (75%), Gaps = 11/485 (2%)

Query: 4   TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEM-KAM--LDLDIPEKGLPLQKLIDDC 60
           T  FL ++V+ILLNY++++ DR+ KVL F+HP ++ + M   +L++ +    L++++ DC
Sbjct: 112 TVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 171

Query: 61  FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
             TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct: 172 RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 231

Query: 121 MRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
           MR+IIGW  + GD I +PGG+ISN+Y+ +AAR+K FP  K KG++A+  +LV+FTS+  H
Sbjct: 232 MREIIGWSNKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP-KLVLFTSEHSH 290

Query: 179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
           YS++   A  G GTDN + +  ++RG++IP++LE  +L+ K KG +P +VN T+GTTV G
Sbjct: 291 YSIKKAGAALGFGTDNVILIKCNERGKIIPADLEAKILDAKQKGFVPLYVNATAGTTVYG 350

Query: 239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
           AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L+GIERA+SVTWNPHK+MG L
Sbjct: 351 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLSGIERANSVTWNPHKMMGVL 409

Query: 299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
           LQCS I  K+ G+L  CNQM A YLF  DK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct: 410 LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 469

Query: 359 KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPHE- 415
           KG  GFE QI++ +ELAEY+  KIK+  ++F ++   EPE  NV FWY+P  +R +P   
Sbjct: 470 KGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSP 528

Query: 416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR 475
           +R   L  + P +K  MM++GT MVGYQP  D  NFFR +IS+ A T+ DIDFL+ E++R
Sbjct: 529 ERREKLHRVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 588

Query: 476 LGHDL 480
           LG DL
Sbjct: 589 LGQDL 593

Catalyzes the production of GABA.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q0VCA1|DCE1_BOVIN Glutamate decarboxylase 1 OS=Bos taurus GN=GAD1 PE=2 SV=1

 Score =  578 bits (1489), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 274/485 (56%), Positives = 365/485 (75%), Gaps = 11/485 (2%)

Query: 4   TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEM-KAM--LDLDIPEKGLPLQKLIDDC 60
           T  FL ++V+ILLNY++++ DR+ KVL F+HP ++ + M   +L++ +    L++++ DC
Sbjct: 113 TVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 172

Query: 61  FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
             TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct: 173 RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 232

Query: 121 MRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
           MR+I+GW  + GD I +PGG+ISN+Y+ +AAR K FP  K KG++A+  +LV+FTS+  H
Sbjct: 233 MREIVGWSSKDGDGIFSPGGAISNMYSIMAARFKYFPEVKTKGMAAVP-KLVLFTSEHSH 291

Query: 179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
           YS++   A  G GTDN + +  ++RG++IP++LE  +LE K KG +P +VN T+GTTV G
Sbjct: 292 YSIKKAGAALGFGTDNVILIKCNERGKIIPADLETKILEAKQKGYVPLYVNATAGTTVYG 351

Query: 239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
           AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L+GIERA+SVTWNPHK+MG L
Sbjct: 352 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSQKHRH-KLSGIERANSVTWNPHKMMGVL 410

Query: 299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
           LQCS I  K+ G+L  CNQM A YLF  DK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct: 411 LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 470

Query: 359 KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPHE- 415
           KG  GFE QI++ +ELAEY+  KIK+  ++F ++   EPE  NV FWY+P  +R +P   
Sbjct: 471 KGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFDGEPEHTNVCFWYIPQSLRGVPDSP 529

Query: 416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR 475
           +R   L  + P +K  MM++GT MVGYQP  D  NFFR +IS+ A T+ DIDFL+ E++R
Sbjct: 530 ERREKLHRVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 589

Query: 476 LGHDL 480
           LG DL
Sbjct: 590 LGQDL 594

Catalyzes the production of GABA.

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P48318|DCE1_MOUSE Glutamate decarboxylase 1 OS=Mus musculus GN=Gad1 PE=2 SV=2

 Score =  578 bits (1489), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 272/485 (56%), Positives = 366/485 (75%), Gaps = 11/485 (2%)

Query: 4   TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEM-KAM--LDLDIPEKGLPLQKLIDDC 60
           T  FL ++V+ILLNY++++ DR+ KVL F+HP ++ + M   +L++ +    L++++ DC
Sbjct: 112 TAQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 171

Query: 61  FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
             TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct: 172 RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 231

Query: 121 MRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
           MR+I+GW  + GD I +PGG+ISN+Y+ +AAR+K FP  K KG++A+  +LV+FTS+  H
Sbjct: 232 MREIVGWSNKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP-KLVLFTSEHSH 290

Query: 179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
           YS++   A  G GTDN + +  ++RG++IP++LE  +L+ K KG +P +VN T+GTTV G
Sbjct: 291 YSIKKAGAALGFGTDNVILIKCNERGKIIPADLEAKILDAKQKGYVPLYVNATAGTTVYG 350

Query: 239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
           AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L+GIERA+SVTWNPHK+MG L
Sbjct: 351 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLSGIERANSVTWNPHKMMGVL 409

Query: 299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
           LQCS I  K+ G+L  CNQM A YLF  DK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct: 410 LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 469

Query: 359 KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPHE- 415
           KG  GFE QI++ +ELA+Y+  KIK+  ++F ++   EPE  NV FWY+P  +R +P   
Sbjct: 470 KGTVGFENQINKCLELADYLYAKIKNR-EEFEMVFDGEPEHTNVCFWYIPQSLRGVPDSP 528

Query: 416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR 475
           +R   L  + P +K  MM++GT MVGYQP  D  NFFR +IS+ A T+ DIDFL+ E++R
Sbjct: 529 ERREKLHRVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 588

Query: 476 LGHDL 480
           LG DL
Sbjct: 589 LGQDL 593

Catalyzes the production of GABA.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q5R7S7|DCE1_PONAB Glutamate decarboxylase 1 OS=Pongo abelii GN=GAD1 PE=2 SV=1

 Score =  576 bits (1484), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 273/485 (56%), Positives = 364/485 (75%), Gaps = 11/485 (2%)

Query: 4   TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEM-KAM--LDLDIPEKGLPLQKLIDDC 60
           T  FL ++V+ILLNY++++ DR+ KVL F+HP ++ + M   +L++ +    L++++ DC
Sbjct: 113 TVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 172

Query: 61  FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
             TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct: 173 RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 232

Query: 121 MRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
           MR+I+GW  + GD I +PGG+ISN+Y+  AAR+K F   K KG++A+  +LV+FTS+  H
Sbjct: 233 MREIVGWSSKDGDGIFSPGGAISNMYSITAARYKYFLEVKTKGMAAVP-KLVLFTSEHSH 291

Query: 179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
           YS++   A  G GTDN + +  ++RG++IP++ E  +LE K KG +PF+VN T+GTTV G
Sbjct: 292 YSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYG 351

Query: 239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
           AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L GIERA+SVTWNPHK+MG L
Sbjct: 352 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLNGIERANSVTWNPHKMMGVL 410

Query: 299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
           LQCS I  K+ G+L  CNQM A YLF  DK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct: 411 LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 470

Query: 359 KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPHE- 415
           KG  GFE QI++ +ELAEY+  KIK+  ++F ++   EPE  NV FWY+P  +R +P   
Sbjct: 471 KGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSP 529

Query: 416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR 475
           +R   L ++ P +K  MM++GT MVGYQP  D  NFFR +IS+ A T+ DIDFL+ E++R
Sbjct: 530 QRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 589

Query: 476 LGHDL 480
           LG DL
Sbjct: 590 LGQDL 594

Catalyzes the production of GABA.

Pongo abelii (taxid: 9601)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	480
383855477	539	PREDICTED: glutamate decarboxylase-like	0.995	0.886	0.818	0.0
340723367	656	PREDICTED: glutamate decarboxylase-like	0.995	0.728	0.805	0.0
380017457	539	PREDICTED: glutamate decarboxylase-like	0.995	0.886	0.812	0.0
328779619	539	PREDICTED: glutamate decarboxylase-like	0.995	0.886	0.812	0.0
350426974	539	PREDICTED: glutamate decarboxylase-like	0.995	0.886	0.805	0.0
350426976	509	PREDICTED: glutamate decarboxylase-like	0.995	0.939	0.805	0.0
307198471	538	Glutamate decarboxylase [Harpegnathos sa	0.995	0.888	0.818	0.0
307172037	614	Glutamate decarboxylase [Camponotus flor	0.995	0.778	0.820	0.0
332019554	473	Glutamate decarboxylase [Acromyrmex echi	0.981	0.995	0.830	0.0
91085785	511	PREDICTED: similar to AGAP005866-PA [Tri	0.995	0.935	0.792	0.0

>gi|383855477|ref|XP_003703237.1| PREDICTED: glutamate decarboxylase-like [Megachile rotundata]

 Score =  845 bits (2183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/479 (81%), Positives = 438/479 (91%), Gaps = 1/479 (0%)

Query: 3   TTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFT 62
            T  FL ++V+ILL++IK +NDRN KVL F+HP+EM  +LDL+IP+ GL LQ+L+ DC T
Sbjct: 61  ATREFLMKVVDILLDFIKSTNDRNAKVLDFHHPSEMMRLLDLEIPDTGLTLQQLLIDCST 120

Query: 63  TLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMR 122
           TLKYQV+TGHP F NQLSCGLD+VSMAGEWL ATANTNMFTYEIAPVFILME VVL+KMR
Sbjct: 121 TLKYQVKTGHPHFFNQLSCGLDLVSMAGEWLTATANTNMFTYEIAPVFILMEHVVLQKMR 180

Query: 123 QIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR 182
           ++IGW GGDSILAPGGSISNLYAFLAARHKMFP+YKE+GLSAI GQLVMFTSDQCHYSV+
Sbjct: 181 ELIGWSGGDSILAPGGSISNLYAFLAARHKMFPSYKERGLSAIGGQLVMFTSDQCHYSVK 240

Query: 183 SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP 242
           SCAAVCGLGTDNCV VPSD+RGR+IPS+LE L+LERKAKG IPFFVN T+GTTV+GAFDP
Sbjct: 241 SCAAVCGLGTDNCVMVPSDERGRMIPSKLEELILERKAKGHIPFFVNATAGTTVIGAFDP 300

Query: 243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCS 302
           I EIADICQ++ +WLH+DAAWGGGLLLS+KYRHPRLTGIERADSVTWNPHKLMG LLQCS
Sbjct: 301 IPEIADICQRHKLWLHIDAAWGGGLLLSRKYRHPRLTGIERADSVTWNPHKLMGALLQCS 360

Query: 303 TIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDE 362
           TIHFK+DGLLISCNQMSAEYLFM DKLYDV+YDTGDKVIQCGRHNDIFKLWLQWRAKG E
Sbjct: 361 TIHFKEDGLLISCNQMSAEYLFMTDKLYDVKYDTGDKVIQCGRHNDIFKLWLQWRAKGTE 420

Query: 363 GFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPH-EKRLNIL 421
           GFEK +DRLMEL+EYMV++IK MPDK+YLILEPEMVNV FWYLPTRVRNMPH  +R+ I+
Sbjct: 421 GFEKHMDRLMELSEYMVRRIKQMPDKYYLILEPEMVNVCFWYLPTRVRNMPHTAERIKII 480

Query: 422 GEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL 480
            +I PILKGRMMQAGT+MVGYQP +  PNFFRNIISSAAVTE D+DFLL EMDRLGHDL
Sbjct: 481 ADICPILKGRMMQAGTLMVGYQPDDRRPNFFRNIISSAAVTEADVDFLLAEMDRLGHDL 539

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723367|ref|XP_003400061.1| PREDICTED: glutamate decarboxylase-like [Bombus terrestris]

 Score =  840 bits (2171), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/479 (80%), Positives = 436/479 (91%), Gaps = 1/479 (0%)

Query: 3   TTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFT 62
            T+ FL ++V+ILL++IK +NDR  KVL F+HP+EM  +LDL+IP+ GL LQ+L+ DC T
Sbjct: 178 ATKEFLMKVVDILLDFIKSTNDRTAKVLDFHHPSEMMRLLDLEIPDSGLTLQQLLIDCST 237

Query: 63  TLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMR 122
           TLKYQV+TGHP F NQLSCGLD+VSMAGEWL ATANTNMFTYEIAPVFILME VVL+KMR
Sbjct: 238 TLKYQVKTGHPHFFNQLSCGLDIVSMAGEWLTATANTNMFTYEIAPVFILMEHVVLQKMR 297

Query: 123 QIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR 182
           ++IGW GGDSILAPGGSISNLYAFLAARHKMFP YKE+GL+AI GQLVMFTSDQCHYSV+
Sbjct: 298 ELIGWNGGDSILAPGGSISNLYAFLAARHKMFPAYKERGLAAIGGQLVMFTSDQCHYSVK 357

Query: 183 SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP 242
           SCA+VCGLGTDNCV VPSD RGR+IPS+LE L+LERKA+G IPFFVN T+GTTV+GAFDP
Sbjct: 358 SCASVCGLGTDNCVMVPSDDRGRMIPSKLEELILERKARGHIPFFVNATAGTTVIGAFDP 417

Query: 243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCS 302
           I EIADICQ++ +WLH+DAAWGGGLLLS+KYRHPR+TGIERADSVTWNPHKLMG LLQCS
Sbjct: 418 IPEIADICQRHKLWLHIDAAWGGGLLLSRKYRHPRMTGIERADSVTWNPHKLMGALLQCS 477

Query: 303 TIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDE 362
           TIHFK+DGLLISCNQMSAEYLFM DKLYDV+YDTGDKVIQCGRHNDIFKLWLQWRAKG E
Sbjct: 478 TIHFKEDGLLISCNQMSAEYLFMTDKLYDVKYDTGDKVIQCGRHNDIFKLWLQWRAKGTE 537

Query: 363 GFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPH-EKRLNIL 421
           GFEK +DRLMEL+EYMV++IK MPDK+YLILEPEMVNV FWYLP RVRNMPH ++R+ IL
Sbjct: 538 GFEKHMDRLMELSEYMVRRIKQMPDKYYLILEPEMVNVCFWYLPIRVRNMPHTQERIKIL 597

Query: 422 GEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL 480
           G+I PILKGRMMQ+GT+MVGYQP +  PNFFRNIISSAAVTE D+DFLL EMDRLG DL
Sbjct: 598 GDICPILKGRMMQSGTLMVGYQPDDRRPNFFRNIISSAAVTEADVDFLLDEMDRLGRDL 656

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017457|ref|XP_003692672.1| PREDICTED: glutamate decarboxylase-like [Apis florea]

 Score =  840 bits (2169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/479 (81%), Positives = 436/479 (91%), Gaps = 1/479 (0%)

Query: 3   TTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFT 62
            T  FL ++V+ILL++IK +NDRN KVL F+HP++M  +LDL+IP+ GL LQ+L+ DC T
Sbjct: 61  ATREFLMKVVDILLDFIKSTNDRNAKVLDFHHPSDMMRLLDLEIPDSGLTLQQLLIDCST 120

Query: 63  TLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMR 122
           TLKYQV+TGHP F NQLSCGLD+VSMAGEWL ATANTNMFTYEIAPVFILME VVL+KMR
Sbjct: 121 TLKYQVKTGHPHFFNQLSCGLDLVSMAGEWLTATANTNMFTYEIAPVFILMEHVVLQKMR 180

Query: 123 QIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR 182
           ++IGW GGDSILAPGGSISNLYAFLAARHKMFP YKE+GLSA+ GQLVMFTSDQCHYSV+
Sbjct: 181 ELIGWSGGDSILAPGGSISNLYAFLAARHKMFPMYKERGLSAVGGQLVMFTSDQCHYSVK 240

Query: 183 SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP 242
           SCAAVCGLGTDNCV VPSD RGR+IPS+LE L+LERKAKG IPFFVN T+GTTV+GAFDP
Sbjct: 241 SCAAVCGLGTDNCVMVPSDDRGRMIPSKLEELILERKAKGHIPFFVNATAGTTVIGAFDP 300

Query: 243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCS 302
           I EIADICQ++ +WLH+DAAWGGGLLLS+KYRHPR+TGIERADSVTWNPHKLMG LLQCS
Sbjct: 301 IPEIADICQRHKLWLHIDAAWGGGLLLSRKYRHPRMTGIERADSVTWNPHKLMGALLQCS 360

Query: 303 TIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDE 362
           TIHFK+DGLLISCNQMSAEYLFM DKLYDV+YDTGDKVIQCGRHNDIFKLWLQWRAKG E
Sbjct: 361 TIHFKEDGLLISCNQMSAEYLFMTDKLYDVKYDTGDKVIQCGRHNDIFKLWLQWRAKGTE 420

Query: 363 GFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPH-EKRLNIL 421
           GF K +DRLMEL+EYMV++IK MPDK+YLILEPEMVNV FWYLPTRVRNMPH ++R+ IL
Sbjct: 421 GFGKHMDRLMELSEYMVRRIKQMPDKYYLILEPEMVNVCFWYLPTRVRNMPHTQERIKIL 480

Query: 422 GEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL 480
            +I PILKGRMMQAGT+MVGYQP +  PNFFRNIISSAAVTE D+DFLL EMDRLGHDL
Sbjct: 481 ADICPILKGRMMQAGTLMVGYQPDDRRPNFFRNIISSAAVTEADVDFLLAEMDRLGHDL 539

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779619|ref|XP_391979.3| PREDICTED: glutamate decarboxylase-like isoform 1 [Apis mellifera]

 Score =  838 bits (2166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/479 (81%), Positives = 436/479 (91%), Gaps = 1/479 (0%)

Query: 3   TTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFT 62
            T  FL ++V+ILL++IK +NDRN KVL F+HP++M  +LDL+IP+ GL LQ+L+ DC T
Sbjct: 61  ATREFLMKVVDILLDFIKSTNDRNAKVLDFHHPSDMMRLLDLEIPDSGLTLQQLLIDCST 120

Query: 63  TLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMR 122
           TLKYQV+TGHP F NQLSCGLD+VSMAGEWL ATANTNMFTYEIAPVFILME VVL+KMR
Sbjct: 121 TLKYQVKTGHPHFFNQLSCGLDLVSMAGEWLTATANTNMFTYEIAPVFILMEHVVLQKMR 180

Query: 123 QIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR 182
           ++IGW GGDSILAPGGSISNLYAFLAARHKMFP YKE+GLSA+ GQLVMFTSDQCHYSV+
Sbjct: 181 ELIGWSGGDSILAPGGSISNLYAFLAARHKMFPMYKERGLSAVGGQLVMFTSDQCHYSVK 240

Query: 183 SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP 242
           SCAAVCGLGTDNCV VPSD RGR+IPS+LE L+LERKAKG IPFFVN T+GTTV+GAFDP
Sbjct: 241 SCAAVCGLGTDNCVMVPSDDRGRMIPSKLEDLILERKAKGHIPFFVNATAGTTVIGAFDP 300

Query: 243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCS 302
           I EIADICQ++ +WLH+DAAWGGGLLLS+KYRHPR+TGIERADSVTWNPHKLMG LLQCS
Sbjct: 301 IPEIADICQRHKLWLHIDAAWGGGLLLSRKYRHPRMTGIERADSVTWNPHKLMGALLQCS 360

Query: 303 TIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDE 362
           TIHFK+DGLLISCNQMSAEYLFM DKLYDV+YDTGDKVIQCGRHNDIFKLWLQWRAKG E
Sbjct: 361 TIHFKEDGLLISCNQMSAEYLFMTDKLYDVKYDTGDKVIQCGRHNDIFKLWLQWRAKGTE 420

Query: 363 GFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPH-EKRLNIL 421
           GF K +DRLMEL+EYMV++IK MPDK+YLILEPEMVNV FWYLPTRVRNMPH ++R+ IL
Sbjct: 421 GFGKHMDRLMELSEYMVRRIKQMPDKYYLILEPEMVNVCFWYLPTRVRNMPHTQERIKIL 480

Query: 422 GEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL 480
            +I PILKGRMMQAGT+MVGYQP +  PNFFRNIISSAAVTE D+DFLL EMDRLGHDL
Sbjct: 481 ADICPILKGRMMQAGTLMVGYQPDDRRPNFFRNIISSAAVTEADVDFLLAEMDRLGHDL 539

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350426974|ref|XP_003494603.1| PREDICTED: glutamate decarboxylase-like isoform 1 [Bombus impatiens]

 Score =  835 bits (2158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/479 (80%), Positives = 436/479 (91%), Gaps = 1/479 (0%)

Query: 3   TTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFT 62
            T+ FL ++V+ILL++IK +NDR  KVL F+HP+EM  +LDL+IP+ GL LQ+L+ DC T
Sbjct: 61  ATKEFLMKVVDILLDFIKSTNDRTAKVLDFHHPSEMMRLLDLEIPDSGLTLQQLLIDCST 120

Query: 63  TLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMR 122
           TLKYQV+TGHP F NQLSCGLD+VSMAGEWL ATANTNMFTYEIAPVFILME VVL+KMR
Sbjct: 121 TLKYQVKTGHPHFFNQLSCGLDIVSMAGEWLTATANTNMFTYEIAPVFILMEHVVLQKMR 180

Query: 123 QIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR 182
           ++IGW GGDSILAPGGSISNLYAFLAARHKMFP YKE+GL+AI GQLVMFTSDQCHYSV+
Sbjct: 181 ELIGWNGGDSILAPGGSISNLYAFLAARHKMFPAYKERGLAAIGGQLVMFTSDQCHYSVK 240

Query: 183 SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP 242
           SCA+VCGLGTDNCV VPSD RGR+IPS+LE L+LERKA+G IPFFVN T+GTTV+GAFDP
Sbjct: 241 SCASVCGLGTDNCVMVPSDDRGRMIPSKLEELILERKARGHIPFFVNATAGTTVIGAFDP 300

Query: 243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCS 302
           I EIADICQ++ +WLH+DAAWGGGLLLS+KYRHPR+TGIERADSVTWNPHKLMG LLQCS
Sbjct: 301 IPEIADICQRHKLWLHIDAAWGGGLLLSRKYRHPRMTGIERADSVTWNPHKLMGALLQCS 360

Query: 303 TIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDE 362
           TIHFK+DGLLISCNQMSAEYLFM DKLYDV+YDTGDKVIQCGRHNDIFKLWLQWRAKG E
Sbjct: 361 TIHFKEDGLLISCNQMSAEYLFMTDKLYDVKYDTGDKVIQCGRHNDIFKLWLQWRAKGTE 420

Query: 363 GFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPH-EKRLNIL 421
           GFEK +DRLMEL+EYMV++IK MPDK+YLILEPEMVNV FWYLP RVRNMPH ++R+ IL
Sbjct: 421 GFEKHMDRLMELSEYMVRRIKQMPDKYYLILEPEMVNVCFWYLPIRVRNMPHTQERIKIL 480

Query: 422 GEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL 480
           G+I PILKGRMMQ+GT+MVGYQP +  PNFFRNIISSAAVTE D+DFLL EMDRLG DL
Sbjct: 481 GDICPILKGRMMQSGTLMVGYQPDDRRPNFFRNIISSAAVTEADVDFLLDEMDRLGRDL 539

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350426976|ref|XP_003494604.1| PREDICTED: glutamate decarboxylase-like isoform 2 [Bombus impatiens]

 Score =  834 bits (2154), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/479 (80%), Positives = 436/479 (91%), Gaps = 1/479 (0%)

Query: 3   TTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFT 62
            T+ FL ++V+ILL++IK +NDR  KVL F+HP+EM  +LDL+IP+ GL LQ+L+ DC T
Sbjct: 31  ATKEFLMKVVDILLDFIKSTNDRTAKVLDFHHPSEMMRLLDLEIPDSGLTLQQLLIDCST 90

Query: 63  TLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMR 122
           TLKYQV+TGHP F NQLSCGLD+VSMAGEWL ATANTNMFTYEIAPVFILME VVL+KMR
Sbjct: 91  TLKYQVKTGHPHFFNQLSCGLDIVSMAGEWLTATANTNMFTYEIAPVFILMEHVVLQKMR 150

Query: 123 QIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR 182
           ++IGW GGDSILAPGGSISNLYAFLAARHKMFP YKE+GL+AI GQLVMFTSDQCHYSV+
Sbjct: 151 ELIGWNGGDSILAPGGSISNLYAFLAARHKMFPAYKERGLAAIGGQLVMFTSDQCHYSVK 210

Query: 183 SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP 242
           SCA+VCGLGTDNCV VPSD RGR+IPS+LE L+LERKA+G IPFFVN T+GTTV+GAFDP
Sbjct: 211 SCASVCGLGTDNCVMVPSDDRGRMIPSKLEELILERKARGHIPFFVNATAGTTVIGAFDP 270

Query: 243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCS 302
           I EIADICQ++ +WLH+DAAWGGGLLLS+KYRHPR+TGIERADSVTWNPHKLMG LLQCS
Sbjct: 271 IPEIADICQRHKLWLHIDAAWGGGLLLSRKYRHPRMTGIERADSVTWNPHKLMGALLQCS 330

Query: 303 TIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDE 362
           TIHFK+DGLLISCNQMSAEYLFM DKLYDV+YDTGDKVIQCGRHNDIFKLWLQWRAKG E
Sbjct: 331 TIHFKEDGLLISCNQMSAEYLFMTDKLYDVKYDTGDKVIQCGRHNDIFKLWLQWRAKGTE 390

Query: 363 GFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPH-EKRLNIL 421
           GFEK +DRLMEL+EYMV++IK MPDK+YLILEPEMVNV FWYLP RVRNMPH ++R+ IL
Sbjct: 391 GFEKHMDRLMELSEYMVRRIKQMPDKYYLILEPEMVNVCFWYLPIRVRNMPHTQERIKIL 450

Query: 422 GEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL 480
           G+I PILKGRMMQ+GT+MVGYQP +  PNFFRNIISSAAVTE D+DFLL EMDRLG DL
Sbjct: 451 GDICPILKGRMMQSGTLMVGYQPDDRRPNFFRNIISSAAVTEADVDFLLDEMDRLGRDL 509

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198471|gb|EFN79405.1| Glutamate decarboxylase [Harpegnathos saltator]

 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/479 (81%), Positives = 437/479 (91%), Gaps = 1/479 (0%)

Query: 3   TTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFT 62
            T  FL ++V+ILL+++K +NDRN K+L F+HPA+M  +LDL+IP+ GL LQ+L+ DC  
Sbjct: 60  ATREFLMKVVDILLDFVKSTNDRNAKILDFHHPADMMRLLDLEIPDTGLTLQQLLLDCSM 119

Query: 63  TLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMR 122
           TLKYQV+TGHP F NQLSCGLD+VSMAGEWL ATANTNMFTYEIAPVFILME VVL+KMR
Sbjct: 120 TLKYQVKTGHPHFFNQLSCGLDLVSMAGEWLTATANTNMFTYEIAPVFILMEHVVLQKMR 179

Query: 123 QIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR 182
           ++IGW GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAI GQLVMFTSDQCHYSV+
Sbjct: 180 ELIGWSGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIGGQLVMFTSDQCHYSVK 239

Query: 183 SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP 242
           SCA+VCGLGTDNCV VPSD+RGR+IPS+LE L+LERKA+G IPFFVN T+GTTV+GAFDP
Sbjct: 240 SCASVCGLGTDNCVMVPSDERGRIIPSKLEELILERKARGHIPFFVNATAGTTVIGAFDP 299

Query: 243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCS 302
           I EIADICQKY +WLHVDAAWGGGLLLS+KYRHPR+TG+ERADSVTWNPHKLMG LLQCS
Sbjct: 300 IPEIADICQKYRLWLHVDAAWGGGLLLSRKYRHPRMTGVERADSVTWNPHKLMGALLQCS 359

Query: 303 TIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDE 362
           +IHFK+DGLLISCNQMSAEYLFM DKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG +
Sbjct: 360 SIHFKEDGLLISCNQMSAEYLFMTDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGTD 419

Query: 363 GFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPH-EKRLNIL 421
           GFEK +DRLMEL EYMVK+IK MPDK+YLILEPE+VNV FWYLPTRVRNMPH  +R+ IL
Sbjct: 420 GFEKHMDRLMELTEYMVKRIKQMPDKYYLILEPELVNVCFWYLPTRVRNMPHTTERIKIL 479

Query: 422 GEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL 480
           GEI PILKGRMMQAGT+MVGYQP +  PNFFRNIISSAAVTE D+DFLL EMDRLGHDL
Sbjct: 480 GEICPILKGRMMQAGTLMVGYQPDDRRPNFFRNIISSAAVTEADVDFLLAEMDRLGHDL 538

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172037|gb|EFN63631.1| Glutamate decarboxylase [Camponotus floridanus]

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/479 (82%), Positives = 434/479 (90%), Gaps = 1/479 (0%)

Query: 3   TTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFT 62
            T+ FL ++V+ILL+++K +NDRN KVL F+HPA+M  +LDL+IP+ GL LQ+L+ DC  
Sbjct: 136 ATKEFLMKVVDILLDFVKSTNDRNAKVLDFHHPADMMRLLDLEIPDTGLTLQQLLLDCSM 195

Query: 63  TLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMR 122
           TLKYQV+TGHP F NQLSCGLD++SMAGEWL ATANTNMFTYEIAPVFILME  VL+KMR
Sbjct: 196 TLKYQVKTGHPHFFNQLSCGLDLISMAGEWLTATANTNMFTYEIAPVFILMEHFVLQKMR 255

Query: 123 QIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR 182
           ++IGW  GDSILAPGGSISNLYAFLAARHKMFP YKEKGLSAI GQLVMFTSDQCHYSV+
Sbjct: 256 ELIGWNCGDSILAPGGSISNLYAFLAARHKMFPYYKEKGLSAIGGQLVMFTSDQCHYSVK 315

Query: 183 SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP 242
           SCA+VCGLGTDNCV VPSD+RGR+IPS+LE  +LERKAKG IPFFVN T+GTTV+GAFDP
Sbjct: 316 SCASVCGLGTDNCVMVPSDERGRIIPSKLEESILERKAKGHIPFFVNATAGTTVIGAFDP 375

Query: 243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCS 302
           I EIADICQKY +WLHVDAAWGGGLLLS+KYRHPRL+GIERADSVTWNPHKLMG LLQCS
Sbjct: 376 IPEIADICQKYKLWLHVDAAWGGGLLLSRKYRHPRLSGIERADSVTWNPHKLMGALLQCS 435

Query: 303 TIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDE 362
           TIHFK+DGLLISCNQMSAEYLFM DKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG E
Sbjct: 436 TIHFKEDGLLISCNQMSAEYLFMTDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGTE 495

Query: 363 GFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPH-EKRLNIL 421
           GFEK +DRLMEL EYMVK+IK MPDK+YLILEPE+VNV FWYLPTRVRNMPH  +R+ IL
Sbjct: 496 GFEKHMDRLMELTEYMVKRIKQMPDKYYLILEPELVNVCFWYLPTRVRNMPHTAERIKIL 555

Query: 422 GEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL 480
           GEI PILKGRMMQAGT+MVGYQP +  PNFFRNIISSAAVTE DIDFLL EMDRLGHDL
Sbjct: 556 GEICPILKGRMMQAGTLMVGYQPDDRRPNFFRNIISSAAVTEADIDFLLAEMDRLGHDL 614

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019554|gb|EGI60033.1| Glutamate decarboxylase [Acromyrmex echinatior]

 Score =  827 bits (2137), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/472 (83%), Positives = 435/472 (92%), Gaps = 1/472 (0%)

Query: 10  QLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVR 69
           ++V+ILL+++K +NDRN K+L F+HPA+M  +LDL+IP+ GL LQ+L+ DC TTLKYQV+
Sbjct: 2   KVVDILLDFVKSTNDRNAKILDFHHPADMMRLLDLEIPDTGLTLQQLLLDCSTTLKYQVK 61

Query: 70  TGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQG 129
           TGHP F NQLSCGLD++SMAGEWL ATANTNMFTYEIAPVFILME VVL+KMR++IGW G
Sbjct: 62  TGHPRFFNQLSCGLDLMSMAGEWLTATANTNMFTYEIAPVFILMEHVVLQKMRELIGWSG 121

Query: 130 GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG 189
           GDSILAPGGSISNLYAFLAARHKMFP YKEKGLSAI GQLVMFTSDQCHYSV+SCA+VCG
Sbjct: 122 GDSILAPGGSISNLYAFLAARHKMFPYYKEKGLSAIGGQLVMFTSDQCHYSVKSCASVCG 181

Query: 190 LGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADI 249
           LGTDNCV VPSD+RGR+IPS+LE L+LERKAKG IPFFVN T+GTTV+GAFD I EIADI
Sbjct: 182 LGTDNCVMVPSDERGRIIPSKLEELILERKAKGHIPFFVNATAGTTVIGAFDSIPEIADI 241

Query: 250 CQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQD 309
           CQKYN+WLHVDAAWGGGLLLS+KYRHPRLTGIERADSVTWNPHKLMG LLQCS+IHFK+D
Sbjct: 242 CQKYNLWLHVDAAWGGGLLLSRKYRHPRLTGIERADSVTWNPHKLMGALLQCSSIHFKED 301

Query: 310 GLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQID 369
           GLLISCNQMSAEYLFM DKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG EGFEK +D
Sbjct: 302 GLLISCNQMSAEYLFMTDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGTEGFEKHMD 361

Query: 370 RLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPH-EKRLNILGEITPIL 428
           RLMELAEYMV++IK MPDK+YLILEPE+VNV FWYLPTRVRNMPH  +R+ ILGEI PIL
Sbjct: 362 RLMELAEYMVRRIKQMPDKYYLILEPELVNVCFWYLPTRVRNMPHTAERIKILGEICPIL 421

Query: 429 KGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL 480
           KGRMMQAGT+MVGYQP +  PNFFRNIISSAAVTE D+DFLL EMDRLGHDL
Sbjct: 422 KGRMMQAGTLMVGYQPDDRRPNFFRNIISSAAVTEADVDFLLAEMDRLGHDL 473

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91085785|ref|XP_974463.1| PREDICTED: similar to AGAP005866-PA [Tribolium castaneum] gi|270009994|gb|EFA06442.1| hypothetical protein TcasGA2_TC009324 [Tribolium castaneum]

 Score =  826 bits (2133), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/481 (79%), Positives = 432/481 (89%), Gaps = 3/481 (0%)

Query: 3   TTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFT 62
            T  FL++L+ ILL++++ +NDRNEK+L F+HPAEM+A+LDL IP KG+ LQ+LI DC T
Sbjct: 31  VTNEFLQKLIEILLDFVRATNDRNEKILDFHHPAEMQALLDLAIPNKGVSLQQLIHDCAT 90

Query: 63  TLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMR 122
           TLKYQV+TGHP F NQLSCGLD++SMAGEWL ATANTNMFTYEIAPVFILME VV+  MR
Sbjct: 91  TLKYQVKTGHPRFFNQLSCGLDIISMAGEWLTATANTNMFTYEIAPVFILMENVVMTHMR 150

Query: 123 QIIG--WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS 180
           +IIG  W  GDSILAPGGSISNLYAFLAARHKMFP YKEKG++ I+GQLVMFTSDQ HYS
Sbjct: 151 EIIGSNWVNGDSILAPGGSISNLYAFLAARHKMFPNYKEKGIATIQGQLVMFTSDQSHYS 210

Query: 181 VRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAF 240
           V+SCA++CGLGTDNC+ VPSD  GR+IPSELERL+L+RKAKG IPFFV CTSGTTVLGAF
Sbjct: 211 VKSCASICGLGTDNCLMVPSDIHGRMIPSELERLILDRKAKGHIPFFVCCTSGTTVLGAF 270

Query: 241 DPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ 300
           DPI EIADIC+KY MWLHVDAAWGGGLLLSKKYRHPRL+G+ERADSVTWNPHKLMG LLQ
Sbjct: 271 DPINEIADICEKYGMWLHVDAAWGGGLLLSKKYRHPRLSGVERADSVTWNPHKLMGALLQ 330

Query: 301 CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG 360
           CSTIHFK+DGLL+SCNQMSA+YLFMQDKLYD++YDTGDKVIQCGRHNDIFKLWLQWRAKG
Sbjct: 331 CSTIHFKEDGLLMSCNQMSADYLFMQDKLYDIKYDTGDKVIQCGRHNDIFKLWLQWRAKG 390

Query: 361 DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHE-KRLN 419
           D+GFEK +DRLMEL+EYMVK+IK  PDKFYLI+EPE+VNVSFWY+PTR+R MPH   R  
Sbjct: 391 DDGFEKHMDRLMELSEYMVKRIKEQPDKFYLIMEPELVNVSFWYIPTRLRKMPHSPAREQ 450

Query: 420 ILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD 479
            LG++ PILK RMMQ GT+MVGYQP +  PNFFRNIISSAAVTE D+DFLL+EMDRLGHD
Sbjct: 451 ELGKMCPILKARMMQTGTLMVGYQPDDRRPNFFRNIISSAAVTESDVDFLLSEMDRLGHD 510

Query: 480 L 480
           L
Sbjct: 511 L 511

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	480
FB|FBgn0004516	510	Gad1 "Glutamic acid decarboxyl	0.993	0.935	0.748	5.4e-205
UNIPROTKB|Q99259	594	GAD1 "Glutamate decarboxylase	0.987	0.797	0.567	1.5e-152
UNIPROTKB|P48319	594	GAD1 "Glutamate decarboxylase	0.987	0.797	0.569	2e-152
UNIPROTKB|Q9YI58	590	GAD67 "Glutamate decarboxylase	0.987	0.803	0.569	3.2e-152
UNIPROTKB|F1PRT3	594	GAD1 "Glutamate decarboxylase	0.987	0.797	0.563	4.1e-152
UNIPROTKB|J9P2A8	595	GAD1 "Glutamate decarboxylase	0.987	0.796	0.563	4.1e-152
UNIPROTKB|A0PA85	594	GAD1 "Glutamate decarboxylase	0.987	0.797	0.564	6.7e-152
WB|WBGene00006762	508	unc-25 [Caenorhabditis elegans	0.985	0.931	0.569	6.7e-152
RGD|2652	593	Gad1 "glutamate decarboxylase	0.987	0.799	0.564	1.4e-151
UNIPROTKB|Q0VCA1	594	GAD1 "Glutamate decarboxylase	0.987	0.797	0.564	2.3e-151

FB|FBgn0004516 Gad1 "Glutamic acid decarboxylase 1" [Drosophila melanogaster (taxid:7227)]

 Score = 1983 (703.1 bits), Expect = 5.4e-205, P = 5.4e-205
 Identities = 358/478 (74%), Positives = 418/478 (87%)

Query:     4 TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTT 63
             T  FL +++++LL+++K +NDRNEKVL F+HP +MK +LDLD+P++ LPLQ+LI+DC TT
Sbjct:    33 TREFLLKVIDVLLDFVKATNDRNEKVLDFHHPEDMKRLLDLDVPDRALPLQQLIEDCATT 92

Query:    64 LKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQ 123
             LKYQV+TGHP F NQLS GLD++SMAGEWL ATANTNMFTYEIAPVFILME VVL KMR+
Sbjct:    93 LKYQVKTGHPHFFNQLSNGLDLISMAGEWLTATANTNMFTYEIAPVFILMENVVLTKMRE 152

Query:   124 IIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS 183
             IIGW GGDSILAPGGSISNLYAFLAARHKMFP YKE G   + G LVMFTSDQCHYS++S
Sbjct:   153 IIGWSGGDSILAPGGSISNLYAFLAARHKMFPNYKEHGSVGLPGTLVMFTSDQCHYSIKS 212

Query:   184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPI 243
             CAAVCGLGTD+C+ VPSD+ G++I SELERL+LERKAKGDIPFFVN T+GTTVLGAFD I
Sbjct:   213 CAAVCGLGTDHCIVVPSDEHGKMITSELERLILERKAKGDIPFFVNATAGTTVLGAFDDI 272

Query:   244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCST 303
               IADICQKYN W+H+DAAWGGGLL+S+K+RHPR TG+ERADSVTWNPHKLMG LLQCST
Sbjct:   273 NTIADICQKYNCWMHIDAAWGGGLLMSRKHRHPRFTGVERADSVTWNPHKLMGALLQCST 332

Query:   304 IHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEG 363
             IHFK+DGLLISCNQMSAEYLFM DK YD+ YDTGDKVIQCGRHNDIFKLWLQWRAKG EG
Sbjct:   333 IHFKEDGLLISCNQMSAEYLFMTDKQYDISYDTGDKVIQCGRHNDIFKLWLQWRAKGTEG 392

Query:   364 FEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNI-LG 422
             FE+Q DRLMEL +Y +K+I+   D+F+LILEPE VNVSFWY+P R+R +PH+ +  + LG
Sbjct:   393 FEQQQDRLMELVQYQLKRIREQSDRFHLILEPECVNVSFWYVPKRLRGVPHDAKKEVELG 452

Query:   423 EITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL 480
             +I PI+KGRMMQ GT+MVGYQP +  PNFFR+IISSAAV E D+DF+L E+ RLG DL
Sbjct:   453 KICPIIKGRMMQKGTLMVGYQPDDRRPNFFRSIISSAAVNEADVDFMLDEIHRLGDDL 510

GO:0004351 "glutamate decarboxylase activity" evidence=ISS;IDA;NAS

GO:0006538 "glutamate catabolic process" evidence=IMP;NAS

GO:0042136 "neurotransmitter biosynthetic process" evidence=NAS

GO:0008345 "larval locomotory behavior" evidence=IMP

GO:0007528 "neuromuscular junction development" evidence=IMP

GO:0009449 "gamma-aminobutyric acid biosynthetic process" evidence=IMP;NAS

GO:0045213 "neurotransmitter receptor metabolic process" evidence=IMP

GO:0007416 "synapse assembly" evidence=IMP

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009612 "response to mechanical stimulus" evidence=IGI

GO:0008355 "olfactory learning" evidence=IMP

UNIPROTKB|Q99259 GAD1 "Glutamate decarboxylase 1" [Homo sapiens (taxid:9606)]

 Score = 1488 (528.9 bits), Expect = 1.5e-152, P = 1.5e-152
 Identities = 275/485 (56%), Positives = 366/485 (75%)

Query:     4 TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEM-KAM--LDLDIPEKGLPLQKLIDDC 60
             T  FL ++V+ILLNY++++ DR+ KVL F+HP ++ + M   +L++ +    L++++ DC
Sbjct:   113 TVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 172

Query:    61 FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
               TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct:   173 RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 232

Query:   121 MRQIIGWQG--GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
             MR+I+GW    GD I +PGG+ISN+Y+ +AAR+K FP  K KG++A+  +LV+FTS+Q H
Sbjct:   233 MREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP-KLVLFTSEQSH 291

Query:   179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
             YS++   A  G GTDN + +  ++RG++IP++ E  +LE K KG +PF+VN T+GTTV G
Sbjct:   292 YSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYG 351

Query:   239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
             AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L GIERA+SVTWNPHK+MG L
Sbjct:   352 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLNGIERANSVTWNPHKMMGVL 410

Query:   299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
             LQCS I  K+ G+L  CNQM A YLF  DK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct:   411 LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 470

Query:   359 KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPHE- 415
             KG  GFE QI++ +ELAEY+  KIK+  ++F ++   EPE  NV FWY+P  +R +P   
Sbjct:   471 KGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSP 529

Query:   416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR 475
             +R   L ++ P +K  MM++GT MVGYQP  D  NFFR +IS+ A T+ DIDFL+ E++R
Sbjct:   530 QRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 589

Query:   476 LGHDL 480
             LG DL
Sbjct:   590 LGQDL 594

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042136 "neurotransmitter biosynthetic process" evidence=IEA

GO:0009449 "gamma-aminobutyric acid biosynthetic process" evidence=IEA

GO:0016595 "glutamate binding" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0004351 "glutamate decarboxylase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IDA

GO:0006538 "glutamate catabolic process" evidence=TAS

GO:0012506 "vesicle membrane" evidence=NAS

GO:0018352 "protein-pyridoxal-5-phosphate linkage" evidence=TAS

GO:0006540 "glutamate decarboxylation to succinate" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

GO:0061202 "clathrin-sculpted gamma-aminobutyric acid transport vesicle membrane" evidence=TAS

UNIPROTKB|P48319 GAD1 "Glutamate decarboxylase 1" [Sus scrofa (taxid:9823)]

 Score = 1487 (528.5 bits), Expect = 2.0e-152, P = 2.0e-152
 Identities = 276/485 (56%), Positives = 365/485 (75%)

Query:     4 TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEM-KAM--LDLDIPEKGLPLQKLIDDC 60
             T  FL ++V+ILLNY++++ DR+ KVL F+HP ++ + M   +L++ +    L++++ DC
Sbjct:   113 TVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 172

Query:    61 FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
               TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct:   173 RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 232

Query:   121 MRQIIGWQG--GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
             MR+I+GW    GD I +PGG+ISN+Y+ +AAR+K FP  K KG++A+  +LV+FTS+  H
Sbjct:   233 MREIVGWSNKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP-KLVLFTSEHSH 291

Query:   179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
             YS++   A  G GTDN + +  ++RG++IP++LE  +LE K KG IP +VN T+GTTV G
Sbjct:   292 YSIKKAGAALGFGTDNVILIKCNERGKIIPADLEAKILEAKQKGYIPLYVNATAGTTVYG 351

Query:   239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
             AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L+GIERADSVTWNPHK+MG L
Sbjct:   352 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLSGIERADSVTWNPHKMMGVL 410

Query:   299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
             LQCS I  K+ G+L  CNQM A YLF  DK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct:   411 LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 470

Query:   359 KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPHE- 415
             KG  GFE QI++ +ELAEY+  KIK+  ++F ++   EPE  NV FWY+P  +R +P   
Sbjct:   471 KGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFDGEPEHTNVCFWYIPQSLRGVPDSP 529

Query:   416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR 475
             +R   L  + P +K  MM++GT MVGYQP  D  NFFR +IS+ A T+ DIDFL+ E++R
Sbjct:   530 ERREKLHRVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 589

Query:   476 LGHDL 480
             LG DL
Sbjct:   590 LGQDL 594

GO:0005622 "intracellular" evidence=IEA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA

GO:0042136 "neurotransmitter biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

UNIPROTKB|Q9YI58 GAD67 "Glutamate decarboxylase 67" [Gallus gallus (taxid:9031)]

 Score = 1485 (527.8 bits), Expect = 3.2e-152, P = 3.2e-152
 Identities = 276/485 (56%), Positives = 365/485 (75%)

Query:     4 TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEM-KAM--LDLDIPEKGLPLQKLIDDC 60
             T  FL ++V+ILLNY++++ DR+ KVL F+HP ++ + M   +L++ +    L++++ DC
Sbjct:   109 TMQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDNPESLEQILVDC 168

Query:    61 FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
               TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L K
Sbjct:   169 RDTLKYGVRTGHPRFFNQLSTGLDMIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLRK 228

Query:   121 MRQIIGWQG--GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
             MR+IIGW    GD I +PGG+ISN+Y+ +AAR+K FP  K KG++A+  +LV+FTS+  H
Sbjct:   229 MREIIGWSNKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP-KLVLFTSEHSH 287

Query:   179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
             YS++   A  G GTDN + +  ++RG++IP++LE  +LE K KG +P FVN T+GTTV G
Sbjct:   288 YSIKKAGAALGFGTDNVILIKCNERGKIIPADLEAKILEAKQKGYVPLFVNATAGTTVYG 347

Query:   239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
             AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L GIERA+SVTWNPHK+MG L
Sbjct:   348 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLNGIERANSVTWNPHKMMGVL 406

Query:   299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
             LQCS I  ++ G+L  CNQM A YLF QDK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct:   407 LQCSAILVREKGILQGCNQMCAGYLFQQDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 466

Query:   359 KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE--PEMVNVSFWYLPTRVRNMPH-E 415
             KG  GFE QI++ +ELAEY+  KIK+  ++F ++ E  PE  NV FWY+P  +R MP  +
Sbjct:   467 KGTVGFENQINKCLELAEYLYTKIKNR-EEFEMVFEGEPEHTNVCFWYIPPSLRGMPDCD 525

Query:   416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR 475
             +R   L  + P +K  MM++GT MVGYQP  D  NFFR +IS+ A T+ DIDFL+ E++R
Sbjct:   526 ERREKLHRVAPKIKALMMESGTTMVGYQPQGDKVNFFRMVISNPAATKSDIDFLIEEIER 585

Query:   476 LGHDL 480
             LG +L
Sbjct:   586 LGQEL 590

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1PRT3 GAD1 "Glutamate decarboxylase 1" [Canis lupus familiaris (taxid:9615)]

 Score = 1484 (527.5 bits), Expect = 4.1e-152, P = 4.1e-152
 Identities = 274/486 (56%), Positives = 367/486 (75%)

Query:     4 TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEM-KAM--LDLDIPEKGLPLQKLIDDC 60
             T  FL ++V+ILLNY++++ DR+ KVL F+HP ++ + M   +L++ +    L++++ DC
Sbjct:   112 TVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 171

Query:    61 FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
               TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct:   172 RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 231

Query:   121 MRQIIGWQG--GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
             MR+I+GW    GD I +PGG+ISN+Y+ +AAR+K FP  K KG++A+  +LV+FTS+  H
Sbjct:   232 MREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKFFPEVKTKGMAAVP-KLVLFTSEHSH 290

Query:   179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
             YS++   A  G GTDN + +  ++RG++IP++LE  +LE K KG +P +VN T+GTTV G
Sbjct:   291 YSIKKAGAALGFGTDNVILIKCNERGKIIPADLEAKILEAKQKGYVPLYVNATAGTTVYG 350

Query:   239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
             AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L+GIERA+SVTWNPHK+MG L
Sbjct:   351 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLSGIERANSVTWNPHKMMGVL 409

Query:   299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
             LQCS I  K+ G+L  CNQM A YLF  DK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct:   410 LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 469

Query:   359 KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPH-- 414
             KG  GFE QI++ +ELAEY+  KIK+  ++F ++   EPE  NV FWY+P  +R +P   
Sbjct:   470 KGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFDGEPEHTNVCFWYIPQSLRGIPDSP 528

Query:   415 EKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMD 474
             E+R  +  ++ P +K  MM++GT MVGYQP  D  NFFR +IS+ A T+ DIDFL+ E++
Sbjct:   529 ERREKLHRKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIE 588

Query:   475 RLGHDL 480
             RLG DL
Sbjct:   589 RLGQDL 594

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|J9P2A8 GAD1 "Glutamate decarboxylase 1" [Canis lupus familiaris (taxid:9615)]

 Score = 1484 (527.5 bits), Expect = 4.1e-152, P = 4.1e-152
 Identities = 274/486 (56%), Positives = 367/486 (75%)

Query:     4 TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEM-KAM--LDLDIPEKGLPLQKLIDDC 60
             T  FL ++V+ILLNY++++ DR+ KVL F+HP ++ + M   +L++ +    L++++ DC
Sbjct:   113 TVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 172

Query:    61 FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
               TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct:   173 RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 232

Query:   121 MRQIIGWQG--GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
             MR+I+GW    GD I +PGG+ISN+Y+ +AAR+K FP  K KG++A+  +LV+FTS+  H
Sbjct:   233 MREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKFFPEVKTKGMAAVP-KLVLFTSEHSH 291

Query:   179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
             YS++   A  G GTDN + +  ++RG++IP++LE  +LE K KG +P +VN T+GTTV G
Sbjct:   292 YSIKKAGAALGFGTDNVILIKCNERGKIIPADLEAKILEAKQKGYVPLYVNATAGTTVYG 351

Query:   239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
             AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L+GIERA+SVTWNPHK+MG L
Sbjct:   352 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLSGIERANSVTWNPHKMMGVL 410

Query:   299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
             LQCS I  K+ G+L  CNQM A YLF  DK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct:   411 LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 470

Query:   359 KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPH-- 414
             KG  GFE QI++ +ELAEY+  KIK+  ++F ++   EPE  NV FWY+P  +R +P   
Sbjct:   471 KGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFDGEPEHTNVCFWYIPQSLRGIPDSP 529

Query:   415 EKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMD 474
             E+R  +  ++ P +K  MM++GT MVGYQP  D  NFFR +IS+ A T+ DIDFL+ E++
Sbjct:   530 ERREKLHRKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIE 589

Query:   475 RLGHDL 480
             RLG DL
Sbjct:   590 RLGQDL 595

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

UNIPROTKB|A0PA85 GAD1 "Glutamate decarboxylase 1" [Canis lupus familiaris (taxid:9615)]

 Score = 1482 (526.7 bits), Expect = 6.7e-152, P = 6.7e-152
 Identities = 274/485 (56%), Positives = 365/485 (75%)

Query:     4 TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEM-KAM--LDLDIPEKGLPLQKLIDDC 60
             T  FL ++V+ILLNY++++ DR+ KVL F+HP ++ + M   +L++ +    L++++ DC
Sbjct:   113 TVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 172

Query:    61 FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
               TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct:   173 RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 232

Query:   121 MRQIIGWQG--GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
             MR+I+GW    GD I +PGG+ISN+Y+ +AAR+K FP  K KG++A+  +LV+FTS+  H
Sbjct:   233 MREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKFFPEVKTKGMAAVP-KLVLFTSEHSH 291

Query:   179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
             YS++   A  G GTDN + +  ++RG++IP++LE  +LE K KG +P +VN T+GTTV G
Sbjct:   292 YSIKKAGAALGFGTDNVILIKCNERGKIIPADLEAKILEAKQKGYVPLYVNATAGTTVYG 351

Query:   239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
             AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L+GIERA+SVTWNPHK+MG L
Sbjct:   352 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLSGIERANSVTWNPHKMMGVL 410

Query:   299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
             LQCS I  K+ G+L  CNQM A YLF  DK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct:   411 LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 470

Query:   359 KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPHE- 415
             KG  GFE QI++ +ELAEY+  KIK+  ++F ++   EPE  NV FWY+P  +R +P   
Sbjct:   471 KGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFDGEPEHTNVCFWYIPQSLRGIPDSP 529

Query:   416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR 475
             +R   L  + P +K  MM++GT MVGYQP  D  NFFR +IS+ A T+ DIDFL+ E++R
Sbjct:   530 ERREKLHRVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 589

Query:   476 LGHDL 480
             LG DL
Sbjct:   590 LGQDL 594

GO:0004351 "glutamate decarboxylase activity" evidence=IEA

GO:0042136 "neurotransmitter biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

WB|WBGene00006762 unc-25 [Caenorhabditis elegans (taxid:6239)]

 Score = 1482 (526.7 bits), Expect = 6.7e-152, P = 6.7e-152
 Identities = 274/481 (56%), Positives = 358/481 (74%)

Query:     4 TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTT 63
             TE FL ++V +LL YIK+ NDR++K+L F+HP +M+ ++DL IPEK   L KL+  C   
Sbjct:    31 TEEFLNRIVQVLLKYIKDQNDRDQKILEFHHPDKMQMLMDLSIPEKPESLLKLVKSCEDV 90

Query:    64 LKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQ 123
             L+  VRTGHP F NQ+SCGLD+VSMAGEWL ATANTNMFTYEIAPVFILME  V+ +M +
Sbjct:    91 LRLGVRTGHPRFFNQISCGLDLVSMAGEWLTATANTNMFTYEIAPVFILMEKSVMARMWE 150

Query:   124 IIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV 181
              +GW  +  D I APGG+I+NLYA  AARH+++P  K  G+  I   L  FTS+  HYS+
Sbjct:   151 AVGWDPEKADGIFAPGGAIANLYAMNAARHQLWPRSKHLGMKDIP-TLCCFTSEDSHYSI 209

Query:   182 RSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD 241
             +S +AV G+G D C  +P+DK G++IP  LE  ++E K +G  PFF  CT+G+TV GAFD
Sbjct:   210 KSASAVLGIGADYCFNIPTDKNGKMIPEALEAKIIECKKEGLTPFFACCTAGSTVYGAFD 269

Query:   242 PIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQC 301
             P+E +A+IC+++ +W HVDAAWGGG+LLS ++R+ +L GIERA+SVTWNPHKLMG LLQC
Sbjct:   270 PLERVANICERHKLWFHVDAAWGGGMLLSPEHRY-KLAGIERANSVTWNPHKLMGALLQC 328

Query:   302 STIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGD 361
             S   F+QDGLL  CNQMSA+YLF QDK YDV +DTGDK IQCGRHND+FKLWL W++KG 
Sbjct:   329 SACLFRQDGLLFQCNQMSADYLFQQDKPYDVSFDTGDKAIQCGRHNDVFKLWLMWKSKGM 388

Query:   362 EGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-PEMVNVSFWYLPTRVRNM-PHEKRLN 419
             EG+ +QI++LM+LA Y  ++IK   + F LI+E PE +N+ FWY+P+++RN+ P E R  
Sbjct:   389 EGYRQQINKLMDLANYFTRRIKET-EGFELIIENPEFLNICFWYVPSKIRNLEPAEMRAR 447

Query:   420 ILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD 479
              L +I P +K  MMQ GT MVGYQP    PNFFR IIS+ A+T  D+DFL+ E+  +G  
Sbjct:   448 -LEKIAPKIKAGMMQRGTTMVGYQPDKQRPNFFRMIISNQAITREDLDFLIKEIVDIGES 506

Query:   480 L 480
             L
Sbjct:   507 L 507

GO:0030170 "pyridoxal phosphate binding" evidence=IEA;ISS

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0009449 "gamma-aminobutyric acid biosynthetic process" evidence=ISS

GO:0051932 "synaptic transmission, GABAergic" evidence=IGI

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030424 "axon" evidence=IDA

GO:0060077 "inhibitory synapse" evidence=IDA

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0004351 "glutamate decarboxylase activity" evidence=ISS

RGD|2652 Gad1 "glutamate decarboxylase 1" [Rattus norvegicus (taxid:10116)]

 Score = 1479 (525.7 bits), Expect = 1.4e-151, P = 1.4e-151
 Identities = 274/485 (56%), Positives = 365/485 (75%)

Query:     4 TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEM-KAM--LDLDIPEKGLPLQKLIDDC 60
             T  FL ++V+ILLNY++++ DR+ KVL F+HP ++ + M   +L++ +    L++++ DC
Sbjct:   112 TVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 171

Query:    61 FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
               TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct:   172 RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 231

Query:   121 MRQIIGWQG--GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
             MR+IIGW    GD I +PGG+ISN+Y+ +AAR+K FP  K KG++A+  +LV+FTS+  H
Sbjct:   232 MREIIGWSNKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP-KLVLFTSEHSH 290

Query:   179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
             YS++   A  G GTDN + +  ++RG++IP++LE  +L+ K KG +P +VN T+GTTV G
Sbjct:   291 YSIKKAGAALGFGTDNVILIKCNERGKIIPADLEAKILDAKQKGFVPLYVNATAGTTVYG 350

Query:   239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
             AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L+GIERA+SVTWNPHK+MG L
Sbjct:   351 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLSGIERANSVTWNPHKMMGVL 409

Query:   299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
             LQCS I  K+ G+L  CNQM A YLF  DK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct:   410 LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 469

Query:   359 KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPHE- 415
             KG  GFE QI++ +ELAEY+  KIK+  ++F ++   EPE  NV FWY+P  +R +P   
Sbjct:   470 KGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSP 528

Query:   416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR 475
             +R   L  + P +K  MM++GT MVGYQP  D  NFFR +IS+ A T+ DIDFL+ E++R
Sbjct:   529 ERREKLHRVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 588

Query:   476 LGHDL 480
             LG DL
Sbjct:   589 LGQDL 593

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001764 "neuron migration" evidence=ISO

GO:0004351 "glutamate decarboxylase activity" evidence=ISO;ISS;IDA

GO:0005622 "intracellular" evidence=IEA;ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005938 "cell cortex" evidence=ISO

GO:0006915 "apoptotic process" evidence=ISO

GO:0009449 "gamma-aminobutyric acid biosynthetic process" evidence=IDA

GO:0016595 "glutamate binding" evidence=IDA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0021696 "cerebellar cortex morphogenesis" evidence=ISO

GO:0021772 "olfactory bulb development" evidence=ISO

GO:0030170 "pyridoxal phosphate binding" evidence=IEA;IDA

GO:0030424 "axon" evidence=ISO

GO:0035108 "limb morphogenesis" evidence=ISO

GO:0035264 "multicellular organism growth" evidence=ISO

GO:0042136 "neurotransmitter biosynthetic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEP

GO:0043679 "axon terminus" evidence=ISO

GO:0044306 "neuron projection terminus" evidence=ISO

GO:0045202 "synapse" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=IDA

GO:0047485 "protein N-terminus binding" evidence=IPI

GO:0048786 "presynaptic active zone" evidence=ISO

GO:0048854 "brain morphogenesis" evidence=ISO

GO:0061351 "neural precursor cell proliferation" evidence=ISO

UNIPROTKB|Q0VCA1 GAD1 "Glutamate decarboxylase 1" [Bos taurus (taxid:9913)]

 Score = 1477 (525.0 bits), Expect = 2.3e-151, P = 2.3e-151
 Identities = 274/485 (56%), Positives = 364/485 (75%)

Query:     4 TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEM-KAM--LDLDIPEKGLPLQKLIDDC 60
             T  FL ++V+ILLNY++++ DR+ KVL F+HP ++ + M   +L++ +    L++++ DC
Sbjct:   113 TVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 172

Query:    61 FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
               TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct:   173 RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 232

Query:   121 MRQIIGWQG--GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
             MR+I+GW    GD I +PGG+ISN+Y+ +AAR K FP  K KG++A+  +LV+FTS+  H
Sbjct:   233 MREIVGWSSKDGDGIFSPGGAISNMYSIMAARFKYFPEVKTKGMAAVP-KLVLFTSEHSH 291

Query:   179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
             YS++   A  G GTDN + +  ++RG++IP++LE  +LE K KG +P +VN T+GTTV G
Sbjct:   292 YSIKKAGAALGFGTDNVILIKCNERGKIIPADLETKILEAKQKGYVPLYVNATAGTTVYG 351

Query:   239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
             AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L+GIERA+SVTWNPHK+MG L
Sbjct:   352 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSQKHRH-KLSGIERANSVTWNPHKMMGVL 410

Query:   299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
             LQCS I  K+ G+L  CNQM A YLF  DK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct:   411 LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 470

Query:   359 KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPHE- 415
             KG  GFE QI++ +ELAEY+  KIK+  ++F ++   EPE  NV FWY+P  +R +P   
Sbjct:   471 KGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFDGEPEHTNVCFWYIPQSLRGVPDSP 529

Query:   416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR 475
             +R   L  + P +K  MM++GT MVGYQP  D  NFFR +IS+ A T+ DIDFL+ E++R
Sbjct:   530 ERREKLHRVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 589

Query:   476 LGHDL 480
             LG DL
Sbjct:   590 LGQDL 594

GO:0005622 "intracellular" evidence=IEA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA

GO:0042136 "neurotransmitter biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P48321	DCE2_PIG	4, ., 1, ., 1, ., 1, 5	0.5373	0.9875	0.8102	no	N/A
P48318	DCE1_MOUSE	4, ., 1, ., 1, ., 1, 5	0.5608	0.9875	0.7993	yes	N/A
P48319	DCE1_PIG	4, ., 1, ., 1, ., 1, 5	0.5690	0.9875	0.7979	yes	N/A
Q05329	DCE2_HUMAN	4, ., 1, ., 1, ., 1, 5	0.5331	0.9875	0.8102	no	N/A
Q99259	DCE1_HUMAN	4, ., 1, ., 1, ., 1, 5	0.5670	0.9875	0.7979	yes	N/A
Q5IS68	DCE1_PANTR	4, ., 1, ., 1, ., 1, 5	0.5690	0.9875	0.7979	yes	N/A
P71362	DDC_HAEIN	4, ., 1, ., 1, ., 8, 6	0.2788	0.9229	0.8669	yes	N/A
Q4PRC2	DCE2_CANFA	4, ., 1, ., 1, ., 1, 5	0.5373	0.9875	0.8102	no	N/A
P48320	DCE2_MOUSE	4, ., 1, ., 1, ., 1, 5	0.5373	0.9875	0.8102	no	N/A
P18088	DCE1_RAT	4, ., 1, ., 1, ., 1, 5	0.5649	0.9875	0.7993	yes	N/A
A0PA85	DCE1_CANFA	4, ., 1, ., 1, ., 1, 5	0.5649	0.9875	0.7979	yes	N/A
Q5R7S7	DCE1_PONAB	4, ., 1, ., 1, ., 1, 5	0.5628	0.9875	0.7979	yes	N/A
Q05683	DCE2_RAT	4, ., 1, ., 1, ., 1, 5	0.5373	0.9875	0.8102	no	N/A
Q0VCA1	DCE1_BOVIN	4, ., 1, ., 1, ., 1, 5	0.5649	0.9875	0.7979	yes	N/A
P20228	DCE_DROME	4, ., 1, ., 1, ., 1, 5	0.7489	0.9937	0.9352	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.1.1.15	0.979
3rd Layer	4.1.1	0.983

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	480
pfam00282	373	pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca	1e-158
cd06450	345	cd06450, DOPA_deC_like, DOPA decarboxylase family	1e-121
COG0076	460	COG0076, GadB, Glutamate decarboxylase and related	2e-59
TIGR03799	522	TIGR03799, NOD_PanD_pyr, putative pyridoxal-depend	1e-42
PLN02880	490	PLN02880, PLN02880, tyrosine decarboxylase	1e-34
PLN02590	539	PLN02590, PLN02590, probable tyrosine decarboxylas	2e-33
TIGR03812	373	TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase	1e-18
PRK02769	380	PRK02769, PRK02769, histidine decarboxylase; Provi	4e-14
PLN03032	374	PLN03032, PLN03032, serine decarboxylase; Provisio	8e-12
PRK13520	371	PRK13520, PRK13520, L-tyrosine decarboxylase; Prov	1e-11
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	1e-10
PLN02263	470	PLN02263, PLN02263, serine decarboxylase	5e-09
TIGR03811	608	TIGR03811, tyr_de_CO2_Ent, tyrosine decarboxylase,	2e-08
cd00615	294	cd00615, Orn_deC_like, Ornithine decarboxylase fam	4e-08
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	3e-07
pfam00266	370	pfam00266, Aminotran_5, Aminotransferase class-V	1e-05
COG1104	386	COG1104, NifS, Cysteine sulfinate desulfinase/cyst	6e-05
cd06453	373	cd06453, SufS_like, Cysteine desulfurase (SufS)-li	1e-04
PRK13520	371	PRK13520, PRK13520, L-tyrosine decarboxylase; Prov	6e-04
TIGR01977	376	TIGR01977, am_tr_V_EF2568, cysteine desulfurase fa	0.001
TIGR01788	431	TIGR01788, Glu-decarb-GAD, glutamate decarboxylase	0.001
cd06454	349	cd06454, KBL_like, KBL_like; this family belongs t	0.001
TIGR03235	353	TIGR03235, DNA_S_dndA, cysteine desulfurase DndA	0.002

>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain

 Score =  453 bits (1168), Expect = e-158
 Identities = 141/378 (37%), Positives = 196/378 (51%), Gaps = 14/378 (3%)

Query: 35  PAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGH-PMFMNQLSCGLDVVSMAGEWL 93
           P  ++ +L    P    PL  ++ D    +   V T H P F      G    S+ G+ L
Sbjct: 1   PGYLRPLLPEAAPIIPEPLLDILGDIRKNIMPGVTTWHSPNFHAYFPAGNSYPSLLGDML 60

Query: 94  IATANTNMFTYEIAPVFILMETVVLEKMRQIIGW-------QGGDSILAPGGSISNLYAF 146
               N N FT+E +P    +E VV++ + +++G          G  +L  G S SNL A 
Sbjct: 61  SDAINCNGFTWESSPACTELENVVMDWLAKMLGLPKEFLGSGEGGGVLQGGSSESNLLAL 120

Query: 147 LAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRL 206
           LAAR K     K  G  ++ G+LV +TSDQ H S+   A + G+      E+P+D+ G++
Sbjct: 121 LAARTKWIRRMKAAGKPSL-GKLVAYTSDQAHSSIEKAALIAGVE---LREIPTDENGKM 176

Query: 207 IPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGG 266
              +LE+ + E K  G IPFFV  T GTT  GAFDP++E+ DIC KY++WLHVDAA+ G 
Sbjct: 177 RGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNKYDLWLHVDAAYAGS 236

Query: 267 LLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQ 326
             +  ++RH  L GIERADS ++NPHK M  LL CS +  +  G L    Q + EYL   
Sbjct: 237 AFICPEFRH-WLFGIERADSFSFNPHKWMLVLLDCSALWVRDKGALQQALQFNPEYLGHN 295

Query: 327 DKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP 386
           DK  DV  D GD  I   R   I KLW   R+ G EG + QI R +ELA+Y    ++   
Sbjct: 296 DKQSDVAVDYGDWQIPLSRRFRILKLWFVLRSYGVEGLQNQIRRHVELAKYFEALVRKDS 355

Query: 387 DKFYLILEPEMVNVSFWY 404
             F +  E  +  V F  
Sbjct: 356 R-FEICAERGLGLVCFRL 372

Length = 373

>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family

 Score =  359 bits (923), Expect = e-121
 Identities = 128/404 (31%), Positives = 186/404 (46%), Gaps = 61/404 (15%)

Query: 75  FMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDS-- 132
           F+      +D  ++  E L +  N   FT++ +P    ME  V+  + ++ G    D+  
Sbjct: 1   FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADG 60

Query: 133 ILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGT 192
           +   GGS SNL A LAAR +     K  G   I  +LV+  SDQ H SV   AA      
Sbjct: 61  VFTSGGSESNLLALLAARDRARKRLKAGGGRGID-KLVIVCSDQAHVSVEKAAA---YLD 116

Query: 193 DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQK 252
                VP D+ GR+ P  LE  + E KA+G  P  V  T+GTT  GA DP+EEIAD+ +K
Sbjct: 117 VKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEK 176

Query: 253 YNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLL 312
           Y++WLHVDAA+GG LL   + RH    GIER DS++ +PHK     L CS +  +     
Sbjct: 177 YDLWLHVDAAYGGFLLPFPEPRH-LDFGIERVDSISVDPHKYGLVPLGCSAVLVR----- 230

Query: 313 ISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLM 372
                                                 KLW   R  G +G+ + IDR++
Sbjct: 231 ------------------------------------ALKLWATLRRFGRDGYGEHIDRIV 254

Query: 373 ELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRM 432
           +LA+Y+ + I++ P  F L+ EP +  V F   P+             L E+   L  R+
Sbjct: 255 DLAKYLAELIRADP-GFELLGEPNLSLVCFRLKPSVK-----------LDELNYDLSDRL 302

Query: 433 MQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL 476
            + G   V    L   PN  R ++++   T  D D LL +++R 
Sbjct: 303 NERGGWHVPATTLGG-PNVLRFVVTNPLTTRDDADALLEDIERA 345

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345

>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

 Score =  202 bits (515), Expect = 2e-59
 Identities = 106/386 (27%), Positives = 168/386 (43%), Gaps = 28/386 (7%)

Query: 25  RNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQV------RTGHPMFMNQ 78
                     P           PEKG PL++++D+    L   +        GHP     
Sbjct: 12  SKRYSGDSLSPLFGALSDSRMAPEKGEPLEEVLDE----LAELLIKDELYLDGHPRANLA 67

Query: 79  LSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW-QGGDSILAPG 137
             C   V  +A E L++  N N+   + +P    +E  V+  +  ++G  +        G
Sbjct: 68  GFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSG 127

Query: 138 GSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVE 197
           G+ +NL A LAAR + +            G+  +  S+  H+S    A   GLG      
Sbjct: 128 GTEANLLALLAAR-ERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLG---LRR 183

Query: 198 VPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMW 256
           VP+     R+    LE  + E    G +   V  T+GTT  G+ D IEE+ADI ++Y +W
Sbjct: 184 VPTVPTDYRIDVDALEEAIDENTIGGVV---V-GTAGTTDTGSIDDIEELADIAEEYGIW 239

Query: 257 LHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCN 316
           LHVDAA+GG LL   +       G+E  DS+T + HK     + C  + F+ +  L    
Sbjct: 240 LHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRIL 299

Query: 317 QMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAE 376
             +  YL        +  +      + GR      L+   R  G EG+ K +DR +ELA 
Sbjct: 300 IFADYYL----PGGGIP-NFTILGSRPGR--QALALYANLRRLGREGYRKLLDRTLELAR 352

Query: 377 YMVKKIKSMPDKFYLILEPEMVNVSF 402
           Y+ ++++ + D F L+ EPE+  V+F
Sbjct: 353 YLAEELEKLGD-FELVNEPELPIVAF 377

Length = 460

>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate 1-decarboxylase

 Score =  158 bits (401), Expect = 1e-42
 Identities = 113/390 (28%), Positives = 178/390 (45%), Gaps = 33/390 (8%)

Query: 46  IPEKGLPLQKLIDDCFTTLKYQ-VRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTY 104
           IPE+   + +        L    V T  P F+  ++  L    +    L+   N N+   
Sbjct: 62  IPEQPTFVSEHTQFLLDKLVAHSVHTASPSFIGHMTSALPYFMLPLSKLMVALNQNLVKI 121

Query: 105 EIAPVFILMETVVLEKMRQIIGWQGGD-----------SILA--PGGSISNLYAFLAARH 151
           E +  F  +E  VL  M  ++  Q  D           S+ A   GG+++N+ A   AR+
Sbjct: 122 ETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARN 181

Query: 152 KMFPTYKE-KGLSA---IKG-------QLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPS 200
           ++     + KG++               L +  S++ HYS+   A V G+G DN + + +
Sbjct: 182 RLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKT 241

Query: 201 DKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVD 260
           D   R+    L     E   +   P  +   +GTT  G  DP++E+ADI Q+     HVD
Sbjct: 242 DANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVD 301

Query: 261 AAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSA 320
           AAWGG  LLS  YRH  L GIERADSVT + HK +   +    + FK D  L+S  +  A
Sbjct: 302 AAWGGATLLSNTYRH-LLKGIERADSVTIDAHKQLYVPMGAGMVLFK-DPALMSAIEHHA 359

Query: 321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVK 380
           EY+  +        D G   ++  R      ++      G +G+E  ID+ +E A+Y   
Sbjct: 360 EYILRKGS-----KDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFAD 414

Query: 381 KIKSMPDKFYLILEPEMVNVSFWYLPTRVR 410
            I+  PD F L+ EPE+  +++ Y+P  V+
Sbjct: 415 LIQQQPD-FELVTEPELCLLTYRYVPEEVQ 443

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent) [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 522

>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase

 Score =  135 bits (341), Expect = 1e-34
 Identities = 110/424 (25%), Positives = 182/424 (42%), Gaps = 27/424 (6%)

Query: 10  QLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVR 69
           ++V+ + +Y K     N  VL    P  ++ +L    P +   L +++DD    ++ ++ 
Sbjct: 21  RMVDFIADYYKSI--ENFPVLSQVQPGYLRELLPDSAPNQPETLDQVLDD----VQAKIL 74

Query: 70  TG-----HPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLE---KM 121
            G      P +         V    GE L A  N   F++  +P    +E +VL+   K+
Sbjct: 75  PGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKL 134

Query: 122 ----RQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQC 177
                Q +    G  ++    S + L   LAAR ++     +  L     +LV++ SDQ 
Sbjct: 135 LNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALE----KLVVYASDQT 190

Query: 178 HYSVRSCAAVCGLGTDNC--VEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTT 235
           H +++    + G+  +NC  ++  S     L P  L   +    + G IPFF+  T GTT
Sbjct: 191 HSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTT 250

Query: 236 VLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLM 295
              A DP+ E+  I +   MW HVDAA+ G   +  +YRH  + G+E ADS   N HK  
Sbjct: 251 SSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRH-YIDGVEEADSFNMNAHKWF 309

Query: 296 GTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQ 355
            T   CS +  K    LI     + E+L  +    +   D  D  I  GR     KLW+ 
Sbjct: 310 LTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMV 369

Query: 356 WRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHE 415
            R  G E  +  I   ++LA+   + +     +F ++       V F  +P +  N  + 
Sbjct: 370 LRLYGVENLQSYIRNHIKLAKEFEQLVAQDS-RFEVVTPRIFSLVCFRLVPPK-NNEDNG 427

Query: 416 KRLN 419
            +LN
Sbjct: 428 NKLN 431

Length = 490

>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase

 Score =  132 bits (333), Expect = 2e-33
 Identities = 112/390 (28%), Positives = 174/390 (44%), Gaps = 21/390 (5%)

Query: 11  LVNILLNYIKESNDRNEK--VLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQV 68
           +V+ + +Y K   D  +   VL    P  ++ ML    PE+   L++L+DD    +   +
Sbjct: 66  MVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDDVSKKIMPGI 125

Query: 69  RTGH-PMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW 127
                P +    +    V    GE L A  +   FT+  +P    +E +VL+ + +++  
Sbjct: 126 THWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLL-- 183

Query: 128 QGGDSILAPG---------GSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
           Q  D  L+ G         G  + L   LAAR ++    K+ G + +  QLV++ SDQ H
Sbjct: 184 QLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRIL---KKVGKTLLP-QLVVYGSDQTH 239

Query: 179 YSVRSCAAVCGLGTDNCVEVPSDKRGR--LIPSELERLVLERKAKGDIPFFVNCTSGTTV 236
            S R    + G+  +N   + +D      + P  LE  +    AKG IPFF+  T GTT 
Sbjct: 240 SSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTS 299

Query: 237 LGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMG 296
             A DP+  + +I +KY +WLHVDAA+ G   +  +YR   + GIE ADS   N HK + 
Sbjct: 300 SAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRK-FIDGIENADSFNMNAHKWLF 358

Query: 297 TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQW 356
               CS +  K    LI   + + EYL  +    D   +  D  I   R     KLW+  
Sbjct: 359 ANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVL 418

Query: 357 RAKGDEGFEKQIDRLMELAEYMVKKIKSMP 386
           R  G E     I   + LA++    +   P
Sbjct: 419 RLYGSENLRNFIRDHVNLAKHFEDYVAQDP 448

Length = 539

>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA

 Score = 87.4 bits (217), Expect = 1e-18
 Identities = 77/315 (24%), Positives = 131/315 (41%), Gaps = 66/315 (20%)

Query: 137 GGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCV 196
           GG+ +N+ A  AA+  +    K          +++  S   H+S    A + GL      
Sbjct: 84  GGTEANIQAVRAAK-NLAREEKRTP------NIIVPES--AHFSFEKAAEMLGL---ELR 131

Query: 197 EVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMW 256
             P D+   +   ++E L+ +          +   +GTT LG  D IEE++ I  +  ++
Sbjct: 132 YAPLDEDYTVDVKDVEDLIDDNTIG------IVGIAGTTELGQIDDIEELSKIALENGIY 185

Query: 257 LHVDAAWGGGLL--LSKKYRHP----RLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDG 310
           LHVDAA+GG ++  L K Y  P     L G+    S+T +PHK+  + +    I F+   
Sbjct: 186 LHVDAAFGGFVIPFLKKGYNPPPFDFSLPGV---QSITIDPHKMGLSPIPAGGILFRSKS 242

Query: 311 LLISCNQMSAEYLFM--QDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQI 368
            L   + + A YL +  Q  +   R  +G               +   +  G EG+ K +
Sbjct: 243 YLKYLS-VDAPYLTVKKQATITGTR--SGASAA---------ATYAVIKYLGREGYRKIV 290

Query: 369 DRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSF----------------WYLPT----- 407
              ME   Y+V+++K +   F  ++EP +  V+F                WY+       
Sbjct: 291 AECMENTRYLVEELKKIG--FEPVIEPVLNIVAFEVDDPEEVRKKLRDRGWYVSVTRCPK 348

Query: 408 --RVRNMPHEKRLNI 420
             R+  MPH  R +I
Sbjct: 349 ALRIVVMPHVTREHI 363

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 373

>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional

 Score = 73.5 bits (181), Expect = 4e-14
 Identities = 63/254 (24%), Positives = 114/254 (44%), Gaps = 41/254 (16%)

Query: 137 GGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCV 196
           GG+  NLY    AR ++FP               ++ S   HYSV   A +  L   + V
Sbjct: 92  GGTEGNLYGCYLAR-ELFPD------------GTLYYSKDTHYSVSKIARL--LRIKSRV 136

Query: 197 EVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNM- 255
            + S   G +   +L   + E K +   P  +    GTT+ GA D I+EI +I +K  + 
Sbjct: 137 -ITSLPNGEIDYDDLISKIKENKNQ---PPIIFANIGTTMTGAIDNIKEIQEILKKIGID 192

Query: 256 --WLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLI 313
             ++H DAA  G +L       P  +  +  DS+  + HK +G+ + C        G+++
Sbjct: 193 DYYIHADAALSGMILPFVNNPPP-FSFADGIDSIAISGHKFIGSPMPC--------GIVL 243

Query: 314 SCNQMSAEYLFMQDKLYDVRY-DTGDKVIQCGR--HNDIFKLWLQWRAKGDEGFEKQIDR 370
           +  +       ++    DV Y  + D+ I   R  H  +  LW   R+ G +G  +++  
Sbjct: 244 AKKKY------VERISVDVDYIGSRDQTISGSRNGHTALL-LWAAIRSLGSKGLRQRVQH 296

Query: 371 LMELAEYMVKKIKS 384
            +++A+Y V ++++
Sbjct: 297 CLDMAQYAVDRLQA 310

Length = 380

>gnl|CDD|166673 PLN03032, PLN03032, serine decarboxylase; Provisional

 Score = 66.4 bits (162), Expect = 8e-12
 Identities = 62/254 (24%), Positives = 106/254 (41%), Gaps = 41/254 (16%)

Query: 138 GSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVE 197
           G+  NL+  L  R   FP              +++ S + HYSV   A +  +     V+
Sbjct: 94  GTEGNLHGILVGREV-FP------------DGILYASRESHYSVFKAARMYRM---EAVK 137

Query: 198 VPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNM-- 255
           VP+   G +   +LER + + + K   P  +N   GTTV GA D ++ I  I ++     
Sbjct: 138 VPTLPSGEIDYDDLERALAKNRDK---PAILNVNIGTTVKGAVDDLDRILRILKELGYTE 194

Query: 256 ---WLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLL 312
              ++H D A  G L++    R P +T  +   SV+ + HK +G  + C     ++    
Sbjct: 195 DRFYIHCDGALFG-LMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKH-- 251

Query: 313 ISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGR--HNDIFKLWLQWRAKGDEGFEKQIDR 370
           +     + EYL           ++ D  I   R  H  ++ LW   R KG  G ++ +  
Sbjct: 252 VKALSQNVEYL-----------NSRDATIMGSRNGHAPLY-LWYTLRRKGYRGIKRDVQH 299

Query: 371 LMELAEYMVKKIKS 384
            M  A Y+  ++  
Sbjct: 300 CMRNAHYLKDRLTE 313

Length = 374

>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional

 Score = 65.7 bits (161), Expect = 1e-11
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 7/67 (10%)

Query: 233 GTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLL--LSKKYR-HPRLTGIERADSVTW 289
           GTT LG  DPI E++ I  +  ++LHVDAA+GG ++  L         L G+   DS+T 
Sbjct: 160 GTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGV---DSITI 216

Query: 290 NPHKLMG 296
           +PHK MG
Sbjct: 217 DPHK-MG 222

Length = 371

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 44/162 (27%), Positives = 60/162 (37%), Gaps = 26/162 (16%)

Query: 136 PGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV-RSCAAVCGLGTDN 194
           P G+ +N  A LA                  G  V+      H S     A + G     
Sbjct: 24  PSGTGANEAALLALL--------------GPGDEVIV-DANGHGSRYWVAAELAGAKP-- 66

Query: 195 CVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYN 254
            V VP D  G      L+  +LE          +  T  TT  G   P++EI  I ++Y 
Sbjct: 67  -VPVPVDDAGYG---GLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYG 122

Query: 255 MWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMG 296
           + L VDAA  GG   +     P       AD VT++ HK +G
Sbjct: 123 ILLLVDAASAGGASPAPGVLIPE----GGADVVTFSLHKNLG 160

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|177904 PLN02263, PLN02263, serine decarboxylase

 Score = 57.9 bits (140), Expect = 5e-09
 Identities = 64/259 (24%), Positives = 113/259 (43%), Gaps = 51/259 (19%)

Query: 138 GSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVE 197
           G+  NL+  L  R ++FP              +++ S + HYSV   A +  +    CV+
Sbjct: 161 GTEGNLHGILVGR-EVFP------------DGILYASRESHYSVFKAARMYRME---CVK 204

Query: 198 VPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY---- 253
           V +   G +  ++ +  +L  K K   P  +N   GTTV GA D ++ +    ++     
Sbjct: 205 VDTLVSGEIDCADFKAKLLANKDK---PAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQ 261

Query: 254 -NMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLL 312
              ++H D A  G L++    R P++T  +   SV+ + HK +G  + C        G+ 
Sbjct: 262 DRFYIHCDGALFG-LMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPC--------GVQ 312

Query: 313 IS----CNQMSAEYLFMQDKLYDVRY-DTGDKVIQCGR--HNDIFKLWLQWRAKGDEGFE 365
           I+     N +S+          +V Y  + D  I   R  H  IF LW     KG  GF+
Sbjct: 313 ITRMEHINVLSS----------NVEYLASRDATIMGSRNGHAPIF-LWYTLNRKGYRGFQ 361

Query: 366 KQIDRLMELAEYMVKKIKS 384
           K++ + +  A Y+  +++ 
Sbjct: 362 KEVQKCLRNAHYLKDRLRE 380

Length = 470

>gnl|CDD|163523 TIGR03811, tyr_de_CO2_Ent, tyrosine decarboxylase, Enterococcus type

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 51/173 (29%), Positives = 71/173 (41%), Gaps = 40/173 (23%)

Query: 160 KGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERK 219
           K L  +   LV  T    HYS    A + G+G D  + VP D   R+  +ELE+++ +  
Sbjct: 217 KDLQKLGKWLVPQTK---HYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLA 273

Query: 220 AKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYN-----MWLHVDAAWGG--------- 265
           A+      V    G+T  GA D I++I  +  K        +LHVDAA+GG         
Sbjct: 274 AEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDE 333

Query: 266 -----------------GLLLSKKYRHPRLT-----GIERADSVTWNPHKLMG 296
                            G+   KK    R        I  A+SVT +PHK MG
Sbjct: 334 DDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHK-MG 385

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis [Cellular processes, Adaptations to atypical conditions]. Length = 608

>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 37/186 (19%), Positives = 63/186 (33%), Gaps = 42/186 (22%)

Query: 208 PSELERLVLE-RKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGG 266
           P   ++ ++E   AK  +      T+ T   G    + +I +      + + VD A G  
Sbjct: 142 PETFKKALIEHPDAKAAV-----ITNPT-YYGICYNLRKIVEEAHHRGLPVLVDEAHGAH 195

Query: 267 LLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGL----LISCNQM---- 318
                    P    +  AD V  + HK +  L Q S IH K D +    +     +    
Sbjct: 196 FRFHPIL--PSSAAMAGADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVNEALNLHQST 253

Query: 319 SAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYM 378
           S  YL +                      D+       RA      ++ ++ L+ELA Y 
Sbjct: 254 SPSYLILAS-------------------LDV------ARAMMALEGKELVEELIELALYA 288

Query: 379 VKKIKS 384
            ++I  
Sbjct: 289 RQEINK 294

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. Length = 294

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 57/296 (19%), Positives = 106/296 (35%), Gaps = 46/296 (15%)

Query: 195 CVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYN 254
              +P D  G L    LE+L+  +         V  +  + V G  +P++EIA++  ++ 
Sbjct: 139 VRVIPLDDDGLLDLDALEKLITPK------TKLVALSHVSNVTGTVNPVKEIAELAHEHG 192

Query: 255 MWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLIS 314
             + VDAA   G      +    +  +   D + ++ HK +        ++ +++ L   
Sbjct: 193 ALVLVDAAQAAG------HLPIDVQELG-CDFLAFSGHKWLLGPTGIGVLYVRKELL--- 242

Query: 315 CNQMS-----AEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLW-----LQWRAKGDEGF 364
             ++         +    +   V         + G  N I         L +  +   G 
Sbjct: 243 -EELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPN-IAGAIGLAAALDYLLE--IGM 298

Query: 365 EKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVN--VSFWYLPTRVRNMPHEKRLNILG 422
           E       EL EY+++ +  +P               VSF      V+ +       +L 
Sbjct: 299 EAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSF-----NVKGIHPHDVATLLD 353

Query: 423 EITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAV--TEGDIDFLLTEMDRL 476
           E     KG  ++AG      QPL+ L      I +S  +  TE D+D LL  + + 
Sbjct: 354 E-----KGIAVRAGHHCA--QPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKA 402

Length = 405

>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 7/91 (7%)

Query: 173 TSDQCHYSVRSCAA-VCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCT 231
            ++  H++       +          +P D  G L    LE+L+  R         V  T
Sbjct: 93  VTEMEHHANLVPWQELAKRTGATVRVIPVDPNGLLDLDALEKLLTPRTK------LVAIT 146

Query: 232 SGTTVLGAFDPIEEIADICQKYNMWLHVDAA 262
             + V G  +P+EEI  +  +Y   + VDAA
Sbjct: 147 HVSNVTGTVNPVEEIGKLAHEYGALVVVDAA 177

This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370

>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

 Score = 44.9 bits (107), Expect = 6e-05
 Identities = 27/112 (24%), Positives = 39/112 (34%), Gaps = 22/112 (19%)

Query: 164 AIKGQLVMFTSDQC----------HYSVRSCAAVCGLGTDNCVEV---PSDKRGRLIPSE 210
           AIKG  + + + Q           H +V        L      EV   P D  G +   +
Sbjct: 77  AIKGAALAYRNAQKGKHIITSAIEHPAVL--NTCRYLERQG-FEVTYLPVDSNGLVDLEQ 133

Query: 211 LERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAA 262
           LE  +            V+        G   PI EI +IC++  +  HVDA 
Sbjct: 134 LEEALRPDTI------LVSIMHANNETGTIQPIAEIGEICKERGILFHVDAV 179

Length = 386

>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like

 Score = 44.0 bits (105), Expect = 1e-04
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 198 VPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWL 257
           VP D  G+L    LE+L+ ER         V  T  + VLG  +P++EI +I  +  + +
Sbjct: 119 VPVDDDGQLDLEALEKLLTERTK------LVAVTHVSNVLGTINPVKEIGEIAHEAGVPV 172

Query: 258 HVDAA 262
            VD A
Sbjct: 173 LVDGA 177

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373

>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 31/95 (32%)

Query: 360 GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSF----------------W 403
           G EG+ K ++R ME   ++ +++K     F  ++EP +  V+F                W
Sbjct: 277 GREGYRKVVERCMENTRWLAEELKER--GFEPVIEPVLNIVAFDDPNPDEVREKLRERGW 334

Query: 404 YLPT-------RVRNMPHEKR------LNILGEIT 425
            +         R+  MPH  R      L  L E+ 
Sbjct: 335 RVSVTRCPEALRIVCMPHVTREHIENFLEDLKEVK 369

Length = 371

>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 198 VPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWL 257
           V  D  G + P  ++R +     K +    V  +  + V G   PIEEI ++ Q+  ++ 
Sbjct: 117 VKCDNEGLISPERIKRAI-----KTNTKLIV-VSHASNVTGTILPIEEIGELAQENGIFF 170

Query: 258 HVDAAWGGGLL 268
            +DAA   G++
Sbjct: 171 ILDAAQTAGVI 181

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown [Unknown function, Enzymes of unknown specificity]. Length = 376

>gnl|CDD|130848 TIGR01788, Glu-decarb-GAD, glutamate decarboxylase

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 16/93 (17%)

Query: 205 RLIPSELERLVLERKAKGDI----PFFVNCTSGTTVLGAFDPIEEIADICQKYN------ 254
           R +P +  R V++ +   +        V C  GTT  G ++ ++ + D   +YN      
Sbjct: 163 REVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWD 222

Query: 255 MWLHVDAAWGGGLL------LSKKYRHPRLTGI 281
           + +HVDAA GG +       L   +R PR+  I
Sbjct: 223 IPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSI 255

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). Length = 431

>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 208 PSELERLVLERKAKGDIPFFVNCTSGT-TVLGAFDPIEEIADICQKYNMWLHVDAAWGGG 266
             +LE+L L    +      +  T G  ++ G   P+ E+ D+ +KY   L VD A   G
Sbjct: 117 MEDLEKL-LREARRPYGKKLI-VTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVG 174

Query: 267 LLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
           +        P   G+E    +T +   +MGTL
Sbjct: 175 VYG------PHGRGVEEFGGLTDDVDIIMGTL 200

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. Length = 349

>gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 197 EVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMW 256
            +P D+ GR+   EL   +            V+        G+  PI EIA++ + +  +
Sbjct: 117 YLPVDESGRIDVDELADAIRPDTL------LVSIMHVNNETGSIQPIREIAEVLEAHEAF 170

Query: 257 LHVDAAWGGG 266
            HVDAA   G
Sbjct: 171 FHVDAAQVVG 180

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase [DNA metabolism, Restriction/modification]. Length = 353

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	480
PLN02590	539	probable tyrosine decarboxylase	100.0
PLN02880	490	tyrosine decarboxylase	100.0
KOG0629|consensus	510		100.0
KOG0628|consensus	511		100.0
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	100.0
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	100.0
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	100.0
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	100.0
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	100.0
PLN02263	470	serine decarboxylase	100.0
PLN03032	374	serine decarboxylase; Provisional	100.0
PRK02769	380	histidine decarboxylase; Provisional	100.0
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	100.0
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	100.0
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	100.0
PRK13520	371	L-tyrosine decarboxylase; Provisional	100.0
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	100.0
PRK10874	401	cysteine sulfinate desulfinase; Provisional	100.0
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	100.0
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	100.0
KOG1383|consensus	491		100.0
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	100.0
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	100.0
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	100.0
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	100.0
PRK04366	481	glycine dehydrogenase subunit 2; Validated	100.0
PLN02651	364	cysteine desulfurase	100.0
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	100.0
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	100.0
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	100.0
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	100.0
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	100.0
PRK00451	447	glycine dehydrogenase subunit 1; Validated	100.0
PRK05367	954	glycine dehydrogenase; Provisional	99.98
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.98
PRK02948	381	cysteine desulfurase; Provisional	99.98
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.98
KOG1549|consensus	428		99.97
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.97
PRK14012	404	cysteine desulfurase; Provisional	99.97
PLN02409	401	serine--glyoxylate aminotransaminase	99.97
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.97
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.97
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.97
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.97
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.97
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.96
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.96
PLN02724	805	Molybdenum cofactor sulfurase	99.96
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.96
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.96
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.96
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.96
PRK12566	954	glycine dehydrogenase; Provisional	99.95
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.95
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.95
PLN02721	353	threonine aldolase	99.94
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.94
PRK03080	378	phosphoserine aminotransferase; Provisional	99.94
PRK06207	405	aspartate aminotransferase; Provisional	99.93
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.93
PRK06108	382	aspartate aminotransferase; Provisional	99.93
PRK08361	391	aspartate aminotransferase; Provisional	99.93
PRK07179	407	hypothetical protein; Provisional	99.93
PRK07324	373	transaminase; Validated	99.93
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.93
PRK05957	389	aspartate aminotransferase; Provisional	99.93
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.93
PRK05367	954	glycine dehydrogenase; Provisional	99.93
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.93
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.93
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.93
PRK05764	393	aspartate aminotransferase; Provisional	99.92
PLN02483	489	serine palmitoyltransferase	99.92
PLN00175	413	aminotransferase family protein; Provisional	99.92
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.92
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.92
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.92
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.92
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.92
PLN02187	462	rooty/superroot1	99.92
PRK06290	410	aspartate aminotransferase; Provisional	99.92
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.92
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.92
PRK07682	378	hypothetical protein; Validated	99.92
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.91
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.91
KOG1368|consensus	384		99.91
PRK07681	399	aspartate aminotransferase; Provisional	99.91
PLN02656	409	tyrosine transaminase	99.91
PRK09082	386	methionine aminotransferase; Validated	99.91
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.91
PRK08960	387	hypothetical protein; Provisional	99.91
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.91
PRK08912	387	hypothetical protein; Provisional	99.91
PTZ00433	412	tyrosine aminotransferase; Provisional	99.91
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.91
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.91
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.91
KOG2862|consensus	385		99.91
PTZ00377	481	alanine aminotransferase; Provisional	99.91
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.91
PRK06225	380	aspartate aminotransferase; Provisional	99.91
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.9
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.9
PLN02822	481	serine palmitoyltransferase	99.9
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.9
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.9
PRK06107	402	aspartate aminotransferase; Provisional	99.9
PRK06348	384	aspartate aminotransferase; Provisional	99.9
PRK13392	410	5-aminolevulinate synthase; Provisional	99.9
PRK12414	384	putative aminotransferase; Provisional	99.9
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.9
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.9
KOG0259|consensus	447		99.9
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.9
PRK05942	394	aspartate aminotransferase; Provisional	99.9
PRK08068	389	transaminase; Reviewed	99.9
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.9
PRK08363	398	alanine aminotransferase; Validated	99.9
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.9
PRK07337	388	aminotransferase; Validated	99.9
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.9
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.9
PRK09064	407	5-aminolevulinate synthase; Validated	99.9
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.9
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.9
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.9
PRK07550	386	hypothetical protein; Provisional	99.9
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.89
PRK07683	387	aminotransferase A; Validated	99.89
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.89
PRK08636	403	aspartate aminotransferase; Provisional	99.89
PRK13393	406	5-aminolevulinate synthase; Provisional	99.89
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.89
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.89
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.89
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.89
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.89
PLN02231	534	alanine transaminase	99.89
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.89
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.89
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.89
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.89
PRK09105	370	putative aminotransferase; Provisional	99.89
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.89
PRK07777	387	aminotransferase; Validated	99.89
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.89
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.89
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.89
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.89
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.89
PRK07568	397	aspartate aminotransferase; Provisional	99.89
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.89
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.89
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.88
KOG0256|consensus	471		99.88
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.88
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.88
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.88
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.88
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.88
PRK06836	394	aspartate aminotransferase; Provisional	99.88
PRK09265	404	aminotransferase AlaT; Validated	99.88
KOG0257|consensus	420		99.88
PRK06855	433	aminotransferase; Validated	99.88
PRK09148	405	aminotransferase; Validated	99.88
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.88
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.88
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.88
PLN02955	476	8-amino-7-oxononanoate synthase	99.88
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.87
PRK10534	333	L-threonine aldolase; Provisional	99.87
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.87
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.87
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.87
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.87
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.87
PLN02271	586	serine hydroxymethyltransferase	99.87
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.87
PRK07908	349	hypothetical protein; Provisional	99.87
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.87
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.87
PRK08175	395	aminotransferase; Validated	99.87
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.86
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.86
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.86
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.86
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.86
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.86
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.86
PRK05968	389	hypothetical protein; Provisional	99.86
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.86
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.86
PRK08861	388	cystathionine gamma-synthase; Provisional	99.86
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.85
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.85
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.85
PRK06767	386	methionine gamma-lyase; Provisional	99.85
PRK08064	390	cystathionine beta-lyase; Provisional	99.85
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.85
PRK03321	352	putative aminotransferase; Provisional	99.85
PLN02368	407	alanine transaminase	99.85
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.85
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.85
PLN02672	1082	methionine S-methyltransferase	99.85
PRK09028	394	cystathionine beta-lyase; Provisional	99.85
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.85
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.84
PRK06234	400	methionine gamma-lyase; Provisional	99.84
PRK08045	386	cystathionine gamma-synthase; Provisional	99.84
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.84
PLN02509	464	cystathionine beta-lyase	99.84
PRK08776	405	cystathionine gamma-synthase; Provisional	99.84
PRK07050	394	cystathionine beta-lyase; Provisional	99.84
PRK08574	385	cystathionine gamma-synthase; Provisional	99.84
PRK08249	398	cystathionine gamma-synthase; Provisional	99.84
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.84
PRK07811	388	cystathionine gamma-synthase; Provisional	99.83
PRK05839	374	hypothetical protein; Provisional	99.83
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.83
PRK08114	395	cystathionine beta-lyase; Provisional	99.83
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.83
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.83
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.83
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.83
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.83
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.83
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.83
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.83
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.83
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.83
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.83
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.82
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.82
PTZ00376	404	aspartate aminotransferase; Provisional	99.82
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.82
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.82
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.82
PLN02242	418	methionine gamma-lyase	99.82
PRK09275	527	aspartate aminotransferase; Provisional	99.82
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.82
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.82
PRK07505	402	hypothetical protein; Provisional	99.82
PRK07582	366	cystathionine gamma-lyase; Validated	99.82
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.82
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.82
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.81
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.81
PRK07503	403	methionine gamma-lyase; Provisional	99.81
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.81
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.81
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.81
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.81
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.81
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.81
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.8
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.8
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.8
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.8
KOG1360|consensus	570		99.8
PRK06460	376	hypothetical protein; Provisional	99.8
PRK02627	396	acetylornithine aminotransferase; Provisional	99.8
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.8
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.8
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.8
PRK08637	388	hypothetical protein; Provisional	99.8
PRK15029	755	arginine decarboxylase; Provisional	99.8
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.8
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.8
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.8
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.8
PLN02624	474	ornithine-delta-aminotransferase	99.79
PRK13237	460	tyrosine phenol-lyase; Provisional	99.79
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.79
PRK05939	397	hypothetical protein; Provisional	99.79
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.79
PRK05967	395	cystathionine beta-lyase; Provisional	99.79
PRK06541	460	hypothetical protein; Provisional	99.79
PRK07671	377	cystathionine beta-lyase; Provisional	99.78
PRK04311	464	selenocysteine synthase; Provisional	99.78
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.78
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.78
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.78
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.78
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.78
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.78
KOG1357|consensus	519		99.78
PRK06062	451	hypothetical protein; Provisional	99.78
PRK08354	311	putative aminotransferase; Provisional	99.78
PRK12403	460	putative aminotransferase; Provisional	99.77
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.77
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.77
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.77
PLN02452	365	phosphoserine transaminase	99.77
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.76
PLN02397	423	aspartate transaminase	99.76
PRK04260	375	acetylornithine aminotransferase; Provisional	99.76
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.76
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.76
KOG0634|consensus	472		99.76
KOG1359|consensus	417		99.76
PRK06105	460	aminotransferase; Provisional	99.76
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.76
PRK05965	459	hypothetical protein; Provisional	99.75
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.75
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.75
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.75
PRK13578	720	ornithine decarboxylase; Provisional	99.75
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.75
PRK07678	451	aminotransferase; Validated	99.75
PRK07049	427	methionine gamma-lyase; Validated	99.75
PLN00144	382	acetylornithine transaminase	99.75
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.75
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.74
PRK07482	461	hypothetical protein; Provisional	99.74
KOG2040|consensus	1001		99.74
PRK07480	456	putative aminotransferase; Validated	99.74
PRK07036	466	hypothetical protein; Provisional	99.74
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.74
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.74
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.74
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.74
PRK15400	714	lysine decarboxylase CadA; Provisional	99.74
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.74
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.74
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.74
PRK06434	384	cystathionine gamma-lyase; Validated	99.73
PRK07481	449	hypothetical protein; Provisional	99.73
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.73
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.73
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.73
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.73
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.72
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.72
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.72
PRK12566	954	glycine dehydrogenase; Provisional	99.72
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.72
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.71
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.71
PRK06917	447	hypothetical protein; Provisional	99.71
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.71
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.71
PRK06148	1013	hypothetical protein; Provisional	99.7
PRK07483	443	hypothetical protein; Provisional	99.7
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.7
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.7
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.69
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.69
KOG1404|consensus	442		99.69
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.69
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.69
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.68
PRK12462	364	phosphoserine aminotransferase; Provisional	99.68
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.68
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.67
KOG1402|consensus	427		99.67
PRK06149	972	hypothetical protein; Provisional	99.67
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.66
PRK07046	453	aminotransferase; Validated	99.66
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.66
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	99.65
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.64
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.64
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.64
PRK08297	443	L-lysine aminotransferase; Provisional	99.63
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.62
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.58
KOG0053|consensus	409		99.56
KOG0633|consensus	375		99.56
KOG0258|consensus	475		99.56
KOG3846|consensus	465		99.53
KOG1401|consensus	433		99.52
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.51
KOG1358|consensus	467		99.51
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.48
KOG0630|consensus	838		99.44
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.39
KOG2467|consensus	477		99.35
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	99.29
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.17
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.11
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	99.11
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.07
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.07
KOG1403|consensus	452		99.06
KOG2040|consensus	1001		98.99
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	98.87
KOG3843|consensus	432		98.86
KOG1405|consensus	484		98.49
COG4100	416	Cystathionine beta-lyase family protein involved i	98.33
KOG1412|consensus	410		98.04
KOG2790|consensus	370		97.93
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	97.78
KOG1411|consensus	427		97.53
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	96.33
KOG0352|consensus	641		88.44
COG2515	323	Acd 1-aminocyclopropane-1-carboxylate deaminase [A	88.03

>PLN02590 probable tyrosine decarboxylase

Probab=100.00  E-value=6.4e-81  Score=621.29  Aligned_cols=463  Identities=25%  Similarity=0.369  Sum_probs=418.5

Q ss_pred             cHHHHHHHHHHHHHHHHHhhccC--CCcccCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHh-hccCCccCCCCCccccc
Q psy12303          3 TTETFLKQLVNILLNYIKESNDR--NEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFT-TLKYQVRTGHPMFMNQL   79 (480)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~i~~~~~~-~~~~~~~~~~p~~~~~~   79 (480)
                      +.++.+++++|+|++|++++.+.  +.||.++++|+++++.++..+|++|.+++++++++.+ +++...+|+||+|++|+
T Consensus        58 ~~r~~~~~~~d~i~~~~~~~~~~~~~~pv~~~~~p~~l~~~l~~~~P~~g~~~~~il~~~~~~i~p~~~~~~hP~f~a~~  137 (539)
T PLN02590         58 LLREQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDDVSKKIMPGITHWQSPSYFAYY  137 (539)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccCCCCCCCCChHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCCcCCCCCeeEec
Confidence            46788999999999999988852  3699999999999999999999999999999999977 55666689999999999


Q ss_pred             cCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCC-------CCeEECCChhHHHHHHHHHHHHh
Q psy12303         80 SCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQG-------GDSILAPGGSISNLYAFLAARHK  152 (480)
Q Consensus        80 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~-------~~~~~t~ggt~a~~~al~~~~~~  152 (480)
                      +++.+++++++|++++.+|++.+.|..+|+.+++|+++.+|+++++|+|+       ..|+||+|||+||++||.+||++
T Consensus       138 ~~~~~~~~~lgd~l~sa~n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~  217 (539)
T PLN02590        138 ASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDR  217 (539)
T ss_pred             cCCCcHHHHHHHHHHHhcccccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999986       57999999999999999999997


Q ss_pred             cCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEe
Q psy12303        153 MFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNC  230 (480)
Q Consensus       153 ~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~  230 (480)
                      +.+.   .|....| +.+||+|+.+|+|+.|++.++|++..+++.||+|.  +++||+++|+++|++++++|..|++|++
T Consensus       218 ~~~~---~g~~~~~-~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~Vva  293 (539)
T PLN02590        218 ILKK---VGKTLLP-QLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICA  293 (539)
T ss_pred             HHhh---hcccCCC-CEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEE
Confidence            5432   2333335 66999999999999999999999988899999984  6899999999999999999999999999


Q ss_pred             ccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCch
Q psy12303        231 TSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDG  310 (480)
Q Consensus       231 ~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~  310 (480)
                      +.|||.+|++|||++|+++|++||+|+|||||||++.++++.++. .+.|++.+||+++|+|||+++|++||++++|++.
T Consensus       294 TaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~-~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~  372 (539)
T PLN02590        294 TVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRK-FIDGIENADSFNMNAHKWLFANQTCSPLWVKDRY  372 (539)
T ss_pred             EeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHH-HhcCCccCCEEEECchhhcCcCcCEEEEEecCHH
Confidence            999999999999999999999999999999999999999999888 8999999999999999999999999999999998


Q ss_pred             hhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeE
Q psy12303        311 LLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFY  390 (480)
Q Consensus       311 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~  390 (480)
                      .+...+...+.|+..........+++++|++++|||++++++|++|+.+|.+|+++++++..+++++|.+.|++ .++|+
T Consensus       373 ~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~-~~~fe  451 (539)
T PLN02590        373 SLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQ-DPSFE  451 (539)
T ss_pred             HHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeE
Confidence            77777777888985533333345789999999999999999999999999999999999999999999999999 89999


Q ss_pred             EecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHH
Q psy12303        391 LILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLL  470 (480)
Q Consensus       391 ~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~  470 (480)
                      ++.+|.+++|||++.|.....       ..++.++.++.+++.++|.++++++.+.+ ..++|+|++++.++++||+.++
T Consensus       452 l~~~~~l~iVcFr~~~~~~~~-------~~~~~ln~~l~~~l~~~G~~~vs~t~~~g-~~~lR~~i~n~~T~~~dv~~~~  523 (539)
T PLN02590        452 VVTTRYFSLVCFRLAPVDGDE-------DQCNERNRELLAAVNSTGKIFISHTALSG-KFVLRFAVGAPLTEEKHVTEAW  523 (539)
T ss_pred             EecCCceEEEEEEecCCCCCH-------HHHHHHHHHHHHHHHhCCCEEEEeeEECC-EEEEEEEecCCCCCHHHHHHHH
Confidence            999999999999998754210       12344568999999999999999999999 6899999999999999999999


Q ss_pred             HHHHHhhcc
Q psy12303        471 TEMDRLGHD  479 (480)
Q Consensus       471 ~~l~~~~~~  479 (480)
                      +.|.+.+.+
T Consensus       524 ~~i~~~a~~  532 (539)
T PLN02590        524 QIIQKHASK  532 (539)
T ss_pred             HHHHHHHHH
Confidence            999987654

>PLN02880 tyrosine decarboxylase

Probab=100.00  E-value=5.4e-76  Score=587.62  Aligned_cols=461  Identities=24%  Similarity=0.379  Sum_probs=412.9

Q ss_pred             cHHHHHHHHHHHHHHHHHhhccCCCcccCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHh-hccCCccCCCCCccccccC
Q psy12303          3 TTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFT-TLKYQVRTGHPMFMNQLSC   81 (480)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~i~~~~~~-~~~~~~~~~~p~~~~~~~~   81 (480)
                      +.++.++++++++++|++++.+  .||.+..+|+++++.++..+|++|.+++++++++.+ ++++..+++||+|++|+++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~--~pv~~~~~p~~l~~~~~~~~p~~~~~~~~~l~~~~~~i~~~~~~~~hP~f~~~~~~   91 (490)
T PLN02880         14 QLRECGHRMVDFIADYYKSIEN--FPVLSQVQPGYLRELLPDSAPNQPETLDQVLDDVQAKILPGVTHWQSPNYFAYYPS   91 (490)
T ss_pred             HHHHHHHHHHHHHHHHHhcccc--CCCCCCCCHHHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeccC
Confidence            4577899999999999999775  599999999999999999999999999999999976 5677778999999999999


Q ss_pred             CCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCC-------CCeEECCChhHHHHHHHHHHHHhcC
Q psy12303         82 GLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQG-------GDSILAPGGSISNLYAFLAARHKMF  154 (480)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~-------~~~~~t~ggt~a~~~al~~~~~~~~  154 (480)
                      ++.+++++++++.+.+|++...|+.+|+.+++|+++.+|+++++|+|+       +.|++|+|||+||++||.+||++.+
T Consensus        92 ~~~~~~~lad~l~~~~n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~  171 (490)
T PLN02880         92 NSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVL  171 (490)
T ss_pred             CCcHHHHHHHHHHHhhccCCcccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999986       4699999999999999999999754


Q ss_pred             chhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEecc
Q psy12303        155 PTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTS  232 (480)
Q Consensus       155 ~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~  232 (480)
                      +.   .|....+ +.+|++|+.+|+|+.|++.++|++..+++.||+|+  +++||+++|+++|+++.++|..|++|++++
T Consensus       172 ~~---~g~~~~~-~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvata  247 (490)
T PLN02880        172 RK---VGKNALE-KLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATV  247 (490)
T ss_pred             HH---hcccccC-CeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEec
Confidence            32   2322223 56899999999999999999999887899999985  679999999999999999999999999999


Q ss_pred             CCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhh
Q psy12303        233 GTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLL  312 (480)
Q Consensus       233 ~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~  312 (480)
                      |||.+|.+||+++|+++|++||+|+|||||||++.+.++.++. .+.|++.+||+++|+|||+++|++||++++++...+
T Consensus       248 GTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~-~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l  326 (490)
T PLN02880        248 GTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRH-YIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNAL  326 (490)
T ss_pred             CCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHH-HhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHH
Confidence            9999999999999999999999999999999999999988888 889999999999999999999999999999987766


Q ss_pred             HhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        313 ISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       313 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      .......++|+..........+++.++++++|||++++++|++++.+|.+++++++++..++++++.+.|++ .++++++
T Consensus       327 ~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~-~~~~el~  405 (490)
T PLN02880        327 IQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQ-DSRFEVV  405 (490)
T ss_pred             HHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEe
Confidence            666667788886643333345778889999999999999999999999999999999999999999999999 8999999


Q ss_pred             cCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHH
Q psy12303        393 LEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTE  472 (480)
Q Consensus       393 ~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~  472 (480)
                      .+|.++++||++.|....       ....+.++.++.++|.++|.++++.+.+.+ ..++|+|+.++.+|++||+.+++.
T Consensus       406 ~~~~~~iv~Fr~~~~~~~-------~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g-~~~lR~~~~n~~tt~~di~~~~~~  477 (490)
T PLN02880        406 TPRIFSLVCFRLVPPKNN-------EDNGNKLNHDLLDAVNSSGKIFISHTVLSG-KYVLRFAVGAPLTEERHVTAAWKV  477 (490)
T ss_pred             cCCceEEEEEEEeCCCCC-------hhhHHHHHHHHHHHHHhCCCEEEEEEEECC-EEEEEEEecCCCCCHHHHHHHHHH
Confidence            999999999999764321       112344567899999999999999999988 689999999999999999999999


Q ss_pred             HHHhhcc
Q psy12303        473 MDRLGHD  479 (480)
Q Consensus       473 l~~~~~~  479 (480)
                      |.+++++
T Consensus       478 i~~~~~~  484 (490)
T PLN02880        478 LQDEASK  484 (490)
T ss_pred             HHHHHHH
Confidence            9988764

>KOG0629|consensus

Probab=100.00  E-value=2.9e-77  Score=545.24  Aligned_cols=475  Identities=59%  Similarity=1.074  Sum_probs=453.8

Q ss_pred             cHHHHHHHHHHHHHHHHHhhccCCCcccCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHhhccCCccCCCCCccccccCC
Q psy12303          3 TTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCG   82 (480)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~   82 (480)
                      .++.++.++++.|.+|...-.++++.|..+..|.+|+..++.++|+.+++.++|+.+.++.+.+++.++||+|+|...++
T Consensus        32 ~te~fl~~v~~~ll~~v~~~~dr~~kv~~fhhP~~L~~l~nlel~~~~esl~qil~~cr~tl~y~vKTgHprffNQl~~g  111 (510)
T KOG0629|consen   32 VTEPFLRAVVDILLDYVKKGFDRSQKVLDFHHPDELKELFNLELRDQPESLAQILEDCRDTLKYSVKTGHPRFFNQLSSG  111 (510)
T ss_pred             hhHhhhHHHHHHHHHhhccCCcccceeecccChHHHHHHhCcccCCChhhHHHHHHHHHHHHHhhhccCCCcchhhhccC
Confidence            35789999999999998777777889999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCC-CCeEECCChhHHHHHHHHHHHHhcCchhHhcC
Q psy12303         83 LDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQG-GDSILAPGGSISNLYAFLAARHKMFPTYKEKG  161 (480)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g  161 (480)
                      .++.+..++++.+..|+|.++|+..|.+..+|.++...+.++.|++. .+++|++||+.||++++.+||.+.+|+.+..|
T Consensus       112 lD~~~Lag~wlT~t~Ntn~~TYEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~G  191 (510)
T KOG0629|consen  112 LDPIGLAGEWLTSTANTNMFTYEIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKG  191 (510)
T ss_pred             CCHHHHHHHHHHhccCCCCceEEecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhh
Confidence            99999999999999999999999999999999999999999999987 49999999999999999999999999999999


Q ss_pred             CCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc
Q psy12303        162 LSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD  241 (480)
Q Consensus       162 ~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~  241 (480)
                      +...| +.++++|+.+|||+.+++.++|+|...++.|++++.|+|++++||++|.+++++|..|++|.+|+|||..|++|
T Consensus       192 m~~~p-~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFD  270 (510)
T KOG0629|consen  192 MFALP-PLILFTSEESHYSIKKAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFD  270 (510)
T ss_pred             hhcCC-cEEEEecccchhhHHHHHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccC
Confidence            99989 88999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcc
Q psy12303        242 PIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAE  321 (480)
Q Consensus       242 ~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~  321 (480)
                      ||+.|+++|++|++|+|||||+||+.+.+..+++ ++.|++.+||+++++||++++|..||.+++|...++..+.+..+.
T Consensus       271 dL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~-kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~  349 (510)
T KOG0629|consen  271 DLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRH-KLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAI  349 (510)
T ss_pred             cHHHHHHHHHhcCEEEEeecccccccccChhhHh-hccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchh
Confidence            9999999999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC--CceeE
Q psy12303        322 YLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE--PEMVN  399 (480)
Q Consensus       322 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~--~~~~~  399 (480)
                      |+++++..|+..+|.|+..+||||+.+.+++|+.|++-|..|+++.++++.++|+||.+.|++ ..+++++..  |+..+
T Consensus       350 YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lre-r~~~~~l~~~~pe~~n  428 (510)
T KOG0629|consen  350 YLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLRE-REGFEMLFELEPEHVN  428 (510)
T ss_pred             hhhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHh-cccceehhcCCCceEE
Confidence            999999999999999999999999999999999999999999999999999999999999999 788877653  88899


Q ss_pred             EEEEeecCccCCCchh-hHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        400 VSFWYLPTRVRNMPHE-KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       400 v~f~~~~~~~~~~~~~-~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      +||+|+|+.+++...+ +...+|..+...+..+++++|..++++.+...+++++|+.+.++..+.+|+|.+++.|+++.+
T Consensus       429 v~fw~vp~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlgq  508 (510)
T KOG0629|consen  429 VCFWYVPPSLRGWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLGQ  508 (510)
T ss_pred             EeeccCchHhccCcccchhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHhcc
Confidence            9999999998887765 777888888899999999999999999888777889999988999999999999999999987


Q ss_pred             cC
Q psy12303        479 DL  480 (480)
Q Consensus       479 ~l  480 (480)
                      +|
T Consensus       509 ~l  510 (510)
T KOG0629|consen  509 DL  510 (510)
T ss_pred             CC
Confidence            65

>KOG0628|consensus

Probab=100.00  E-value=1e-73  Score=528.04  Aligned_cols=453  Identities=26%  Similarity=0.384  Sum_probs=415.2

Q ss_pred             cHHHHHHHHHHHHHHHHHhhccCCCcccCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHhhccCCc-cCCCCCccccccC
Q psy12303          3 TTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQV-RTGHPMFMNQLSC   81 (480)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~-~~~~p~~~~~~~~   81 (480)
                      +-|+.+++|||+|+||++++++  +||+|.++|++++.++|.+.|++|++|++|++++++++.+++ +|+||+|++|+++
T Consensus         5 efR~~gk~mVD~IadY~e~ir~--r~v~P~v~PGYl~~llP~~aPe~pE~~~~Il~D~ekiI~PGitHw~hP~fhAyfpa   82 (511)
T KOG0628|consen    5 EFREEGKEMVDYIADYLENIRK--RRVLPDVKPGYLRDLLPSKAPEKPESWEDILGDLEKIIMPGITHWQHPHFHAYFPA   82 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCcchhhhhCCCCCCCChhhHHHHHHHHHHHccCCCcccCCCceeeEccC
Confidence            4688999999999999999996  499999999999999999999999999999999999776665 7999999999999


Q ss_pred             CCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCC---------CCeEECCChhHHHHHHHHHHHHh
Q psy12303         82 GLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQG---------GDSILAPGGSISNLYAFLAARHK  152 (480)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~---------~~~~~t~ggt~a~~~al~~~~~~  152 (480)
                      +.+++++++++++..++.-+++|.++|+.+++|..+.+|++++++.|.         +.|++..++|++++.++.+||.+
T Consensus        83 ~~s~~siladmLs~~i~~vGFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~  162 (511)
T KOG0628|consen   83 GNSYPSILADMLSGGIGCVGFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTE  162 (511)
T ss_pred             ccchHHHHHHHHhcccccccceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999863         67999999999999999999998


Q ss_pred             cCchhHhcC----CCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEE
Q psy12303        153 MFPTYKEKG----LSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFV  228 (480)
Q Consensus       153 ~~~~~~~~g----~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v  228 (480)
                      ++...++.-    ....-++.++|+|+++|.|++++|.+.|+   +++.+++|.++.|+.+.|+++|++++++|..|++|
T Consensus       163 ~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssveka~~i~~V---klR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v  239 (511)
T KOG0628|consen  163 KIEEIKSRPPELHESSVLARLVAYCSDQAHSSVEKACLIAGV---KLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFV  239 (511)
T ss_pred             HHHHhhcCCCcccchhhhhhheEEecCcccchHHHhHhhcce---eEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEE
Confidence            765544331    01112267999999999999999999988   79999999999999999999999999999999999


Q ss_pred             EeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeC
Q psy12303        229 NCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQ  308 (480)
Q Consensus       229 ~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~  308 (480)
                      ++|.|||.+.++|+|++|..+|+++|+|||||+||+|.+..+++++. .+.|++.+||+.+++|||+.+...|+.+|+++
T Consensus       240 ~at~GTT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~-l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd  318 (511)
T KOG0628|consen  240 CATLGTTSSCAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRY-LMRGIEYADSFNFNPHKWLLVNFDCSPLWVKD  318 (511)
T ss_pred             EEeecCccccccccHHHhcchhhhcCEEEEeehhhccccccCHHHHH-HhhcchhhccccCChhheeEEeeeeecceeec
Confidence            99999999999999999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             chhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy12303        309 DGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDK  388 (480)
Q Consensus       309 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g  388 (480)
                      +..+.......+-|+.+.....  ..|+..|++++||||+++++|+.++.+|.+++++.++++.+|++.+.+.+.+ .+.
T Consensus       319 ~~~~~~~~~vdp~yL~h~~~~~--~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~-d~~  395 (511)
T KOG0628|consen  319 GTKLSRAFNVDPLYLKHAYQGS--APDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRA-DPR  395 (511)
T ss_pred             CceeeeeeecChHhhcchhhcc--CCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-CCc
Confidence            9888777778888887754433  6889999999999999999999999999999999999999999999999999 899


Q ss_pred             eEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHH
Q psy12303        389 FYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDF  468 (480)
Q Consensus       389 ~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~  468 (480)
                      |+++.+...+.+|||..+.              |++++++.++++.+|.+.+.+....| ..++|++++++.++++||++
T Consensus       396 FE~~~~~~lgLvcFRlk~~--------------N~~ne~Ll~~in~~g~i~l~~~~l~g-k~vlRf~V~s~~t~~~di~~  460 (511)
T KOG0628|consen  396 FEIVNKRILGLVCFRLKGD--------------NEINEALLNRLNSSGRIHLVPASLHG-KFVLRFAVCSPLTNESDIDE  460 (511)
T ss_pred             ceeecccccceeEEeecCC--------------cHHHHHHHHHHHhcCcEEEEEeeecc-eEEEEEEecCCCCcHHHHHH
Confidence            9999999999999986532              23357888999999999999988888 68999999999999999999


Q ss_pred             HHHHHHHhhcc
Q psy12303        469 LLTEMDRLGHD  479 (480)
Q Consensus       469 ~~~~l~~~~~~  479 (480)
                      .++.|.+.+.+
T Consensus       461 a~~~I~~~a~~  471 (511)
T KOG0628|consen  461 AWKIIFEAADE  471 (511)
T ss_pred             HHHHHHHHHHH
Confidence            99999887654

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=100.00  E-value=9.9e-66  Score=513.89  Aligned_cols=458  Identities=27%  Similarity=0.411  Sum_probs=376.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCcccCCCCHHHHHHhcCCCCCCCCCCHHHHHHHH-HhhccCCccCCCCCccccccCC
Q psy12303          4 TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDC-FTTLKYQVRTGHPMFMNQLSCG   82 (480)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~i~~~~-~~~~~~~~~~~~p~~~~~~~~~   82 (480)
                      ..++++++.+.+++|+.+-.....++++.+.+..    ....+|++|.+.+++++++ +.+++++++|+||+|++|++++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~hP~f~g~~~~~   99 (522)
T TIGR03799        24 LGRIEQKISQNLAGFLQEHIVAIEKPLSEIEKDF----SSAEIPEQPTFVSEHTQFLLDKLVAHSVHTASPSFIGHMTSA   99 (522)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcc----cccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCeEEeccCC
Confidence            3455666666666666652221225555443332    2568999999999999986 5577899999999999999997


Q ss_pred             -CChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC-------------CCCCeEECCChhHHHHHHHHH
Q psy12303         83 -LDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW-------------QGGDSILAPGGSISNLYAFLA  148 (480)
Q Consensus        83 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~-------------~~~~~~~t~ggt~a~~~al~~  148 (480)
                       +.....+++ +.+.+|+|...|+.+|+.+++|+++.+|++++++.             +...|+||+|||+||++||++
T Consensus       100 ~p~~~~~l~~-l~~~lN~n~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~  178 (522)
T TIGR03799       100 LPYFMLPLSK-LMVALNQNLVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWV  178 (522)
T ss_pred             CchHHHHHHH-HHHHhcCCcceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHH
Confidence             222233556 66789999999999999999999999999999952             125699999999999999999


Q ss_pred             HHHhcCch------hHhcCCCc-----cCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHH
Q psy12303        149 ARHKMFPT------YKEKGLSA-----IKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLE  217 (480)
Q Consensus       149 ~~~~~~~~------~~~~g~~~-----~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~  217 (480)
                      ||+++++.      .+..|+..     ...+.+|++|+.+|+|+.++++.+|++..+++.||+|++|+||+++|+++|++
T Consensus       179 AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~  258 (522)
T TIGR03799       179 ARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAE  258 (522)
T ss_pred             HHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHH
Confidence            99986532      22233321     01256899999999999999999999877899999999999999999999999


Q ss_pred             HHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCC
Q psy12303        218 RKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGT  297 (480)
Q Consensus       218 ~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~  297 (480)
                      +.++|.+|.+|+.++++|.+|.+||+++|+++|+++|+|+||||||+++.++++.+++ .+.+++++||+++|+|||+++
T Consensus       259 ~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~-~l~gle~aDSit~d~HK~l~~  337 (522)
T TIGR03799       259 LAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRH-LLKGIERADSVTIDAHKQLYV  337 (522)
T ss_pred             HHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHH-HhcCchhCCEEEEChhhcCCc
Confidence            8888888999999999999999999999999999999999999999999988888887 889999999999999999999


Q ss_pred             cccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q psy12303        298 LLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEY  377 (480)
Q Consensus       298 p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~  377 (480)
                      |++||++++|++..+.. ....++|+....     ..+++.+++++||++.++++|++++.+|.+|+++++++..+++++
T Consensus       338 P~g~G~llvr~~~~~~~-~~~~~~Yl~~~~-----~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~  411 (522)
T TIGR03799       338 PMGAGMVLFKDPALMSA-IEHHAEYILRKG-----SKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKY  411 (522)
T ss_pred             CcccEEEEEeCHHHHHH-hccCcchhcCCC-----CCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            99999999999866543 344567764321     235678899999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCeEEecCCceeEEEEEeecCccCCC----ch---hhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC----
Q psy12303        378 MVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNM----PH---EKRLNILGEITPILKGRMMQAGTMMVGYQPLN----  446 (480)
Q Consensus       378 l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~----~~---~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~----  446 (480)
                      |.+.|++ .|+++++.+|..+++||++.|..+...    +.   ......++.++..+.+++.++|.++++.+...    
T Consensus       412 l~~~L~~-~~~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~  490 (522)
T TIGR03799       412 FADLIQQ-QPDFELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQY  490 (522)
T ss_pred             HHHHHhh-CCCeEEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeccccc
Confidence            9999999 899999999999999999988654321    00   12234467778999999999999999987654    


Q ss_pred             -Cc-ccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        447 -DL-PNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       447 -~~-~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                       +. ..++|++++|+.+|++||+.+++.=+
T Consensus       491 ~g~~~~~lR~~~~np~tt~~~i~~~l~~~~  520 (522)
T TIGR03799       491 DHQPTVVFRVVLANPLTTHEILQDILDEQR  520 (522)
T ss_pred             CCCCcEEEEEEecCCCCCHHHHHHHHHHhh
Confidence             21 36899999999999999999887643

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=6e-66  Score=499.16  Aligned_cols=364  Identities=38%  Similarity=0.669  Sum_probs=323.8

Q ss_pred             HHHHHHhcCCCCCCCCCCHHHHHHHHHhhccCCc-cCCCCCccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHH
Q psy12303         35 PAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQV-RTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILM  113 (480)
Q Consensus        35 p~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  113 (480)
                      |+++++.++..+|++|.+.+++++++++.+.+.+ +|+||+|++++++++++++++++++.+.+|+|...|+.+|..+++
T Consensus         1 P~~l~~~~~~~lp~~~~~~~~vl~~~~~~l~~~~~~~~~P~~~~~~~~~~~~~~i~~~~l~~~~n~n~~~~~~~P~~~~~   80 (373)
T PF00282_consen    1 PGELRARLDEELPEEGESLEEVLKDLREILAPGVTHWHHPRFFGFVPGGPSPASILADLLASALNQNGFTWEASPAATEI   80 (373)
T ss_dssp             TTSSGGGCHCCHHSSHH-HHHHHHHHHHHTHGCS-TTTSTTBESSSHT--CHHHHHHHHHHHHHT-BTTSTTTSHHHHHH
T ss_pred             ChhhhhcCccccccCCCCHHHHHHHHHHHhhccCCCCCChhHhhhccCCccHHHHHHHHHHhhhcccccccccccccccc
Confidence            6788888999999999999999999988765555 678899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCC-------CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHH
Q psy12303        114 ETVVLEKMRQIIGWQ-------GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAA  186 (480)
Q Consensus       114 e~~~~~~la~~~g~~-------~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~  186 (480)
                      |.++.+|+++++|+|       ...|++|+|||+||++|+.++|++..++.+..|... .++.+|++|+.+|+|+.|++.
T Consensus        81 E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~-~~~~~i~~s~~aH~S~~Kaa~  159 (373)
T PF00282_consen   81 EREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEE-IPKPVIYVSEQAHYSIEKAAR  159 (373)
T ss_dssp             HHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTH-CSSEEEEEETTS-THHHHHHH
T ss_pred             hHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhccccc-ccccccccccccccHHHHhcc
Confidence            999999999999998       257999999999999999999999887777777531 126699999999999999999


Q ss_pred             HcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccc
Q psy12303        187 VCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGG  266 (480)
Q Consensus       187 ~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~  266 (480)
                      ++|++   ++.||++++++||+++|+++|+++.++|..|.+|+++.|||.+|.+||+++|.++|+++++|+|||||||+.
T Consensus       160 ~lGlg---~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~  236 (373)
T PF00282_consen  160 ILGLG---VRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGS  236 (373)
T ss_dssp             HTTSE---EEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGG
T ss_pred             eeeeE---EEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeeccccccc
Confidence            99994   899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC
Q psy12303        267 LLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH  346 (480)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~  346 (480)
                      .+.++..+. ...+++.+||+++|+|||+++|++||++++|++..+.......+.|+.......+..++++++++++||+
T Consensus       237 ~~~~~~~~~-~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~  315 (373)
T PF00282_consen  237 ALLSPEYRH-LLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSRR  315 (373)
T ss_dssp             GGGHCTTGG-GGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSGH
T ss_pred             ccccccccc-cccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhccccccccccccccccccccccc
Confidence            888998888 8999999999999999999999999999999998887777677899986555555667888999999999


Q ss_pred             CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEe
Q psy12303        347 NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWY  404 (480)
Q Consensus       347 ~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~  404 (480)
                      ++++++|++|+.+|.+|+++++++..+++++|.+.|++ .++++++.+|..++|||+|
T Consensus       316 ~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~-~~~~el~~~~~~~~vcFr~  372 (373)
T PF00282_consen  316 FRALKLWATLKSLGREGYRERIRRCIELARYLADRLRK-DPRFELVNEPDLNIVCFRY  372 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTEEESSTTSSSEEEEEE
T ss_pred             chHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEcCCCceEEEEEe
Confidence            99999999999999999999999999999999999999 8999999999999999987

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=100.00  E-value=6.2e-59  Score=467.48  Aligned_cols=457  Identities=18%  Similarity=0.241  Sum_probs=362.9

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCcccCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHhh-ccCCccCCCC-CccccccCC
Q psy12303          5 ETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTT-LKYQVRTGHP-MFMNQLSCG   82 (480)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~i~~~~~~~-~~~~~~~~~p-~~~~~~~~~   82 (480)
                      ++.+.++++.+++++++....++   +..+|.+++.   ..+.+...+.+++++++.+. .+++++++|| +|++|++++
T Consensus        20 ~~~~~~~~~~~~~~r~~~~p~d~---~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~l~~~sv~~~~P~ry~ghm~~~   93 (608)
T TIGR03811        20 KDLLNKLVDEHLGWRQNYMPQDK---PVISPQERTS---KSFTKTVNNMKDVLDELSSRLRTESVPWHSAGRYWGHMNSE   93 (608)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCC---CCCCHHHhcc---cccccCccCHHHHHHHHHHHHhcCCCCCCCccceEEECcCC
Confidence            56777888888888877543332   3466776654   34555566799999999775 4677899999 999999999


Q ss_pred             CChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhc-CchhHhc-
Q psy12303         83 LDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKM-FPTYKEK-  160 (480)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~-~~~~~~~-  160 (480)
                      +.+++++++++...+|+|...|+.+|+.+.+|+++.+|+++++|+++.+|+||+|||+||++||++||+.+ +|...+. 
T Consensus        94 ~~~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~  173 (608)
T TIGR03811        94 TLMPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEV  173 (608)
T ss_pred             CCHHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhc
Confidence            99999999999999999999999999999999999999999999988899999999999999999999964 2210000 


Q ss_pred             --------------------------------------CCC---ccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEee
Q psy12303        161 --------------------------------------GLS---AIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVP  199 (480)
Q Consensus       161 --------------------------------------g~~---~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~  199 (480)
                                                            +..   ....-.++++|+..|+|+.|++.++|+|.++++.||
T Consensus       174 ~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~Vp  253 (608)
T TIGR03811       174 KPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVP  253 (608)
T ss_pred             cccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEee
Confidence                                                  000   000012699999999999999999999988999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHH---HHcCc--EEEeeccccccc--cccc-
Q psy12303        200 SDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADIC---QKYNM--WLHVDAAWGGGL--LLSK-  271 (480)
Q Consensus       200 ~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~---~~~~~--~l~vD~a~~~~~--~~~~-  271 (480)
                      +|++++||+++|+++|+++.++|.+|.+|+.+.|||.+|++|||++|+++|   +++|+  |+||||||||+.  ++.+ 
T Consensus       254 vD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~  333 (608)
T TIGR03811       254 VDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDE  333 (608)
T ss_pred             cCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccc
Confidence            999999999999999999999999999999999999999999999999999   67887  699999999975  2222 


Q ss_pred             -----------------------------cccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccc
Q psy12303        272 -----------------------------KYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEY  322 (480)
Q Consensus       272 -----------------------------~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~  322 (480)
                                                   ..+. .+.+++.+||+++|+|||++.|++||++++|++.. .......++|
T Consensus       334 ~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~-~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~-~~~~~~~a~Y  411 (608)
T TIGR03811       334 DDNFIPYDDLQEVHAEYGVFTEKKEYISREVYN-AYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRM-RDVISYFATY  411 (608)
T ss_pred             cccccccchhhcccccccccccccccccHhHHH-HHhcCcCceEEEeCcccccccCCCeEEEEEeCHHH-HHHHhcCcch
Confidence                                         2233 67789999999999999999999999999999964 4455567889


Q ss_pred             ccccccccCcccCCCCccccCCCC-CCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCC------CCeEE--
Q psy12303        323 LFMQDKLYDVRYDTGDKVIQCGRH-NDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMP------DKFYL--  391 (480)
Q Consensus       323 l~~~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~------~g~~~--  391 (480)
                      +.......  ....+.++++++|. ++++++|++++.+  |.+|+.++++++.++++++.+.|++ .      +.+++  
T Consensus       412 l~~~~~~~--p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~-~~~~~~~~~~el~~  488 (608)
T TIGR03811       412 VFEKGADI--PALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNN-LEFKVGDKEIEVHP  488 (608)
T ss_pred             hccccccC--cccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh-cccccCCCCeeEEe
Confidence            86532211  12456777888876 5799999999998  9999999999999999999999988 4      45666  


Q ss_pred             ecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hccc-----EEEeeeeeC-------------------
Q psy12303        392 ILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGT-----MMVGYQPLN-------------------  446 (480)
Q Consensus       392 ~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~-----~~~~~~~~~-------------------  446 (480)
                      +.+|+++++||+|.|....      ..+.++.+++++++++- ..|.     ++++.+.+.                   
T Consensus       489 ~~~pdlniV~Fr~~~~g~~------~l~~~n~ln~~i~~~~~~~~g~~~~~~~~~s~t~~~~~~yg~~~~~~~~~~~~~~  562 (608)
T TIGR03811       489 LTKPDFNMVDYVFNEKGND------DLVKMNKLNHAFYDYASYVKGSIYNNEFITSHTDFAIPDYGDSPFAFVNSLGFSD  562 (608)
T ss_pred             cCCCCcceEEEEEecCCCc------cHHHHHHHHHHHHHhhccccCCCCCcceEeeecccccchhhhhHHHHHHHcCCCh
Confidence            6789999999999876522      11235555677877775 2222     333332111                   


Q ss_pred             ------CcccEEEEecccCCCCH-HHHHHHHHHHHHhhc
Q psy12303        447 ------DLPNFFRNIISSAAVTE-GDIDFLLTEMDRLGH  478 (480)
Q Consensus       447 ------~~~~~~R~~~~~~~~t~-~di~~~~~~l~~~~~  478 (480)
                            +.-.++|.++++++.++ +.++.+++.|++.+.
T Consensus       563 ~~~~~~~~~~~lr~~~m~p~~~~~~~~~~~~~~~~~~~~  601 (608)
T TIGR03811       563 EEWQRAGKVTILRASVMTPYMNDKENFDEYAPKIKAAMQ  601 (608)
T ss_pred             hhhccCCceEEEEEEecCcccCChhhHHHHHHHHHHHHH
Confidence                  11357999988887665 778888888877654

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-52  Score=410.09  Aligned_cols=436  Identities=26%  Similarity=0.341  Sum_probs=341.8

Q ss_pred             HHHHHHHhhccCCCcccCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHhh-ccCCcc-CCCCCccccccCCCChHHhHHH
Q psy12303         14 ILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTT-LKYQVR-TGHPMFMNQLSCGLDVVSMAGE   91 (480)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~i~~~~~~~-~~~~~~-~~~p~~~~~~~~~~~~~~~~~~   91 (480)
                      .+.++....+.  .+..+...|-.-.......+|+.+.+.+.++.++... +..... +.||+++.+..+...++.+..+
T Consensus         3 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~g~p~~~v~~~l~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~a~~   80 (460)
T COG0076           3 GLIDKDMLNSK--RYSGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRVPPVAAE   80 (460)
T ss_pred             hHHHHHHhhcc--CCCccccccchhhhhhhccCCccCCchhhHHHHHHHHhhcccccccCCcceEEEccCCCCCHHHHHH
Confidence            34444444443  2444555555555556788999999999999998765 444443 4599999999999999999999


Q ss_pred             HHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceE
Q psy12303         92 WLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLV  170 (480)
Q Consensus        92 ~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~  170 (480)
                      .+...+++|...|..+|+++.+|+++..|+++++|.+ ...|+||+|||+||++|++++|++..+.....+... .+.++
T Consensus        81 ~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~-~~~P~  159 (460)
T COG0076          81 LLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKP-GGKPN  159 (460)
T ss_pred             HHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhccccc-CCCCe
Confidence            9999999999999999999999999999999999994 577999999999999999999998754332211111 11338


Q ss_pred             EEecCCCchhHHHHHHHcCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHH
Q psy12303        171 MFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADI  249 (480)
Q Consensus       171 vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i  249 (480)
                      |++|..+|+|+.|++.++|++   ++.+|.++ +++||+++|+++|++++..|    +|+.+.|||++|.+||+++|.+|
T Consensus       160 ii~s~~aH~s~~Kaa~~lG~~---~~~v~~~~~~~~id~~~l~~~i~~~t~~g----~vV~~aGtT~~G~iDdi~~ia~i  232 (460)
T COG0076         160 IVCSETAHFSFEKAARYLGLG---LRRVPTVPTDYRIDVDALEEAIDENTIGG----VVVGTAGTTDTGSIDDIEELADI  232 (460)
T ss_pred             EEecCcchhHHHHHHHHhCCC---ceeEEeccCccccCHHHHHHHHHhhccCc----eEEEEecCCCCCccCCHHHHHHH
Confidence            999999999999999999994   55666665 79999999999999995443    59999999999999999999999


Q ss_pred             HHHcCcEEEeeccccccccccccccCcc-cCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccccc
Q psy12303        250 CQKYNMWLHVDAAWGGGLLLSKKYRHPR-LTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDK  328 (480)
Q Consensus       250 ~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  328 (480)
                      |+++++|+|||+|+|++.+++...+. . ..+++++||+++|+|||+++|++||++++|+++.+........+|+.+.  
T Consensus       233 a~~~~i~lHVDAA~GG~~~pf~~~~~-~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~--  309 (460)
T COG0076         233 AEEYGIWLHVDAAFGGFLLPFLEPDG-RWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGG--  309 (460)
T ss_pred             HHHcCCcEEEEccccceeecccCccc-hhhcCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCC--
Confidence            99999999999999999998888777 5 7899999999999999999999999999999976666655556666442  


Q ss_pred             ccCcccCCCCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecC
Q psy12303        329 LYDVRYDTGDKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPT  407 (480)
Q Consensus       329 ~~~~~~~~~~~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~  407 (480)
                            ...+.++.++|.. .++++|+.++.+|.+||+++++++.++++++.+.|++ .+.++++.+|..+.+||++.+.
T Consensus       310 ------~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~-~~~~e~~~~p~l~~V~fr~~~~  382 (460)
T COG0076         310 ------GIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEK-LGDFELVNEPELPIVAFRLKDD  382 (460)
T ss_pred             ------CcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHh-CCCcEeecCCccceEEEEcCCc
Confidence                  2334455567766 8899999999999999999999999999999999999 7779999999999999998332


Q ss_pred             ccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        408 RVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       408 ~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                      . .  ...+....++..+..+..+...+|..++..+.... ..++++...+..++.++ +.+...+.
T Consensus       383 ~-~--~~~~~~~~~~~~gw~v~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~  444 (460)
T COG0076         383 E-D--TLADLSERLDRRGWQVPAQLLPKGLAIVFGTHVTG-RQGLKFIVANLLITDRE-ESLLALIE  444 (460)
T ss_pred             c-c--chhchHHHHHhcCceeecccCCccceeeeeeEEee-eeeehhhcchhhhhhhh-HHHHHHhh
Confidence            1 1  01122222332334455555556655554444444 45667665666666666 55555544

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=100.00  E-value=8.5e-52  Score=405.91  Aligned_cols=401  Identities=16%  Similarity=0.173  Sum_probs=321.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHhhccCCccCCCCCccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHH
Q psy12303         43 DLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMR  122 (480)
Q Consensus        43 ~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la  122 (480)
                      ...+|++|.+.+++++.+...+- ..+..||+|+++.++++.+.  +.+++...++.+...|..+|..+++|+++++|++
T Consensus        14 ~~~~p~~~~~~~~~~~~~~~~iy-ld~~a~~~~~~~~tt~~~p~--~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la   90 (431)
T TIGR01788        14 KYRMPEEEMPPDAAYQLIHDELS-LDGNPRLNLATFVTTWMEPE--ARKLMDETINKNMIDKDEYPQTAEIENRCVNMLA   90 (431)
T ss_pred             cccCCCCCCCHHHHHHHHHHHhh-hcCCcceeeeeeeCCCCCHH--HHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHH
Confidence            46899999999999999977553 24456899999999888776  4578888888887888888888899999999999


Q ss_pred             HHhCCC-C-CC--eEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEe
Q psy12303        123 QIIGWQ-G-GD--SILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEV  198 (480)
Q Consensus       123 ~~~g~~-~-~~--~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v  198 (480)
                      +++|++ + .+  +++|+||||||++|+.+++++.....++.|... . +.+|++|+.+|+|+.++++.+|+   +++.|
T Consensus        91 ~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~-~-~~~ii~s~~~H~sv~ka~~~lg~---~v~~i  165 (431)
T TIGR01788        91 DLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPT-D-KPNLVMGSNVQVCWEKFARYFDV---ELREV  165 (431)
T ss_pred             HHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCC-C-CcEEEEcCcchHHHHHHHHHcCc---eeEEE
Confidence            999997 3 23  445899999999999998864222112223211 1 34899999999999999999998   88999


Q ss_pred             eCCCC-CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHc------CcEEEeeccccccccccc
Q psy12303        199 PSDKR-GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY------NMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       199 ~~~~~-~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~------~~~l~vD~a~~~~~~~~~  271 (480)
                      |++++ +.+|+++|+++|+++      |++|+++++||.+|++||+++|+++|+++      |+|+|||+||+++.+++.
T Consensus       166 ~~d~~~~~vd~~~L~~~i~~~------t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~  239 (431)
T TIGR01788       166 PMDPGRYVIDPEQVVEAVDEN------TIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFV  239 (431)
T ss_pred             ecCCCceeeCHHHHHHHHhhC------CeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHh
Confidence            99876 699999999999877      89999999999999999999999999999      999999999999886543


Q ss_pred             cccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC-Cch
Q psy12303        272 KYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN-DIF  350 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~-~~l  350 (480)
                      ..+.+.....+++||+++|+|||+++|+|+|+++++++..+.......++|+...         ..+.+++++|++ .++
T Consensus       240 ~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~---------~~~~t~~~sR~g~~al  310 (431)
T TIGR01788       240 YPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGD---------EPTFTLNFSRPANQVI  310 (431)
T ss_pred             CCCchhhcCCCCceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCCC---------CCCcceecCchHHHHH
Confidence            3222112236689999999999998999999999998755444334455676431         123567788886 788


Q ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHH
Q psy12303        351 KLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILK  429 (480)
Q Consensus       351 ~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~  429 (480)
                      +.|+.++.+|.+|+++++++..+++++|.+.|++ .++++++.+ |..+++||++.+..-.+         .+  +.++.
T Consensus       311 ~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~-~~~~el~~~~~~~~iV~Fr~~~~~~~~---------~~--~~~l~  378 (431)
T TIGR01788       311 AQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAK-LGPFEIISDGSGIPLVAFKLKDDADPG---------YT--LYDLS  378 (431)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEeeCCCCceEEEEEeCCCCCCC---------cC--HHHHH
Confidence            9999999999999999999999999999999999 899999987 78999999986532000         11  35678


Q ss_pred             HHHHhcccEEE---eeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        430 GRMMQAGTMMV---GYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       430 ~~l~~~g~~~~---~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      ++|.++|+.+.   .++...+ ..++|++ +.+.++++.++.+++.|++++.+|
T Consensus       379 ~~L~~~G~~~~~~~~p~~~~~-~~~lR~~-~~~~~~~~~~~~~~~~~~~~~~~~  430 (431)
T TIGR01788       379 HRLRERGWIVPAYTLPKNAED-IVVMRIV-VREGFSRDLAELLIEDIEAALAYL  430 (431)
T ss_pred             HHHHHCCCcccCCCCCCccCC-eEEEEEE-ecCCCCHHHHHHHHHHHHHHHHhh
Confidence            88889997643   3333455 5789999 678889999999999999987654

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PLN02263 serine decarboxylase

Probab=100.00  E-value=1.2e-50  Score=393.51  Aligned_cols=356  Identities=20%  Similarity=0.269  Sum_probs=293.8

Q ss_pred             HHHHHHHHHhhccCCccCCCCCccccccCCCCh-HHhHHHHHHHHcCcCCcchhcCh---hhHHHHHHHHHHHHHHhCCC
Q psy12303         53 LQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDV-VSMAGEWLIATANTNMFTYEIAP---VFILMETVVLEKMRQIIGWQ  128 (480)
Q Consensus        53 ~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~---~~~~~e~~~~~~la~~~g~~  128 (480)
                      ++++++++.+.+.+..    ..|++| |...++ .+.+++++...+|.-+..|..+|   ...++|+++.+|+++++|++
T Consensus        75 ~~~~l~~~~~~~~~~~----~~~~gY-p~n~~~d~s~l~~~l~~~~nN~Gdp~~~s~~~~~s~~~E~~Vi~wla~L~g~p  149 (470)
T PLN02263         75 MASVLARYRKTLVERT----KHHLGY-PYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIE  149 (470)
T ss_pred             HHHHHHHHHHHHHhcc----cceeCC-CCcccCChhhHHHHHHhhccCCCCccccCCcchhHHHHHHHHHHHHHHHhCCC
Confidence            4778888877666443    238888 666666 68899999999988888888887   68999999999999999997


Q ss_pred             C--CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCC
Q psy12303        129 G--GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRL  206 (480)
Q Consensus       129 ~--~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~  206 (480)
                      +  .+|++|+|||+||++|+.++|+..            + +.++|+|+.+|+|+.|+++++|+   +++.||++++|+|
T Consensus       150 ~~~~~G~vtsGGTEaNL~Al~aARe~~------------~-~~vvy~S~~aH~Sv~KAa~llgi---~~~~Vp~d~~g~m  213 (470)
T PLN02263        150 KNEYWGYITNCGTEGNLHGILVGREVF------------P-DGILYASRESHYSVFKAARMYRM---ECVKVDTLVSGEI  213 (470)
T ss_pred             CCCCeEEEeCcHHHHHHHHHHHHHhhc------------C-CcEEEEcCCccHHHHHHHHhcCC---cceEeccCCCCcC
Confidence            5  469999999999999999999852            2 33899999999999999999999   7899999999999


Q ss_pred             CHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCc-----EEEeeccccccccccccccCcccCCC
Q psy12303        207 IPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNM-----WLHVDAAWGGGLLLSKKYRHPRLTGI  281 (480)
Q Consensus       207 d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~-----~l~vD~a~~~~~~~~~~~~~~~~~~~  281 (480)
                      |+++|+++|+++.   .+|.+|+++.|||++|++|||++|.++|+++|+     |+|||||+||+.+++..... .+.+.
T Consensus       214 D~~aL~~aI~~d~---~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~-~~df~  289 (470)
T PLN02263        214 DCADFKAKLLANK---DKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAP-KVTFK  289 (470)
T ss_pred             cHHHHHHHHHhCC---CCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccccc-ccCCC
Confidence            9999999997753   358999999999999999999999999999997     99999999999885544332 45566


Q ss_pred             CCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC-CchHHHHHHHHhc
Q psy12303        282 ERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN-DIFKLWLQWRAKG  360 (480)
Q Consensus       282 ~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~-~~l~~~~~l~~~g  360 (480)
                      +.+||+++|+|||+++|++||++++|++. + ......+.|+...           +.++.++|++ .++++|++|+.+|
T Consensus       290 ~~vDSIsvD~HK~l~~P~~cgvll~R~~~-~-~~~~~~~~Yl~~~-----------d~ti~gSR~g~~al~lW~~L~~~G  356 (470)
T PLN02263        290 KPIGSVSVSGHKFVGCPMPCGVQITRMEH-I-NVLSSNVEYLASR-----------DATIMGSRNGHAPIFLWYTLNRKG  356 (470)
T ss_pred             cCccEEEECCccccCCCcCEEEEEEehhh-H-hhhccChHhhCCC-----------CCCcCCCCCcHHHHHHHHHHHHhC
Confidence            67999999999999999999999999653 2 3344567777543           2367789997 5899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEE
Q psy12303        361 DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMV  440 (480)
Q Consensus       361 ~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~  440 (480)
                      .+|++++++++.++++++.+.|++ . |++++.+|...+++|+.. ..                  +    ...+|..+.
T Consensus       357 ~~G~~~~i~~~~~~A~~l~~~l~~-~-g~~~~~~p~s~~V~f~~p-~~------------------~----~~~~gW~L~  411 (470)
T PLN02263        357 YRGFQKEVQKCLRNAHYLKDRLRE-A-GISAMLNELSSTVVFERP-KD------------------E----EFVRRWQLA  411 (470)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-C-CCeEEeCCCceEEEEecC-ch------------------H----HhhcceEEc
Confidence            999999999999999999999999 4 888878899999999521 10                  0    113443222


Q ss_pred             eeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        441 GYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       441 ~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      ..      ++.++++ +.+..+++.||.+++.|++..+
T Consensus       412 ~~------~~~~Hiv-vmphv~~~~id~fi~DL~~~~~  442 (470)
T PLN02263        412 CQ------GNIAHVV-VMPSVTIEKLDYFLKELVEKRS  442 (470)
T ss_pred             cC------CCcEEEE-EcCCCCHHHHHHHHHHHHHHHh
Confidence            11      4579999 6676789999999999987654

>PLN03032 serine decarboxylase; Provisional

Probab=100.00  E-value=3.1e-45  Score=352.00  Aligned_cols=353  Identities=19%  Similarity=0.232  Sum_probs=269.7

Q ss_pred             HHHHHHHhhccCCccCCCCCccccccCCCChHHhHHHHHHHHcCcCCcchh---cChhhHHHHHHHHHHHHHHhCCCCC-
Q psy12303         55 KLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYE---IAPVFILMETVVLEKMRQIIGWQGG-  130 (480)
Q Consensus        55 ~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~e~~~~~~la~~~g~~~~-  130 (480)
                      ++++.+.+.+.    ..+..|++|...-..-.+.+..++....+.-+..+.   .+....++|+++++|+++++|+++. 
T Consensus        10 ~~~~~~~~~~~----~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~   85 (374)
T PLN03032         10 DILASYDKLLA----EKSSVHFGYPYNLDFDYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDE   85 (374)
T ss_pred             HHHHHHHHHHH----HhhhhccCCCchhccChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCcc
Confidence            34444444443    334566666544422224455555544332222222   2335789999999999999999764 


Q ss_pred             -CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHH
Q psy12303        131 -DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPS  209 (480)
Q Consensus       131 -~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~  209 (480)
                       +|+||+|||+||++++.++|+..            + +.+|++|..+|+|+.++++.+|+   .++.||++++|+||++
T Consensus        86 ~~G~fTsGGTEaNl~al~~ar~~~------------~-~~~vi~s~~~H~Sv~kaa~~lg~---~~~~V~~d~~g~id~~  149 (374)
T PLN03032         86 YWGYITTCGTEGNLHGILVGREVF------------P-DGILYASRESHYSVFKAARMYRM---EAVKVPTLPSGEIDYD  149 (374)
T ss_pred             CCEEEeCchHHHHHHHHHHHHHhC------------C-CcEEEeCCCceeHHHHHHHHcCC---CCeEeeeCCCCcCcHH
Confidence             47999999999999999998742            2 23899999999999999999998   5788999999999999


Q ss_pred             HHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcC-----cEEEeeccccccccccccccCcccCCCCCC
Q psy12303        210 ELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYN-----MWLHVDAAWGGGLLLSKKYRHPRLTGIERA  284 (480)
Q Consensus       210 ~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~-----~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~  284 (480)
                      +|+++|+++.   ..|.+|+++++||++|++||+++|+++|+++|     +|+|||+|++++.+++..... .+....++
T Consensus       150 ~L~~~i~~~~---~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~-~~~~~~~v  225 (374)
T PLN03032        150 DLERALAKNR---DKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAP-EVTFRKPI  225 (374)
T ss_pred             HHHHHHHHcC---CCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCc-ccCCCcCC
Confidence            9999998742   24899999999999999999999999999996     599999999999876543222 33333479


Q ss_pred             ccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC-CCchHHHHHHHHhcHHH
Q psy12303        285 DSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-NDIFKLWLQWRAKGDEG  363 (480)
Q Consensus       285 D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~~l~~~g~~~  363 (480)
                      ||+++|+||++++|.|+|++++++.. +.. ....++|+...           +++++++|+ +.++++|++|+.+|.+|
T Consensus       226 DSis~s~HK~~g~P~g~G~ll~r~~~-~~~-~~~~~~Yl~~~-----------d~ti~gSR~g~~~l~~w~~l~~~G~~g  292 (374)
T PLN03032        226 GSVSVSGHKFLGCPMPCGVALTRKKH-VKA-LSQNVEYLNSR-----------DATIMGSRNGHAPLYLWYTLRRKGYRG  292 (374)
T ss_pred             cEEEECcccccCCCcCeEEEEEEchh-hHh-hccCCcccCCC-----------CCcccCCCchHHHHHHHHHHHHhCHHH
Confidence            99999999999999999999999753 332 33456776432           357889997 57999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeee
Q psy12303        364 FEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQ  443 (480)
Q Consensus       364 ~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~  443 (480)
                      +.++++++.++++++.+.|++  .+++++.+|...+++|+....                      ..+ .+|..+... 
T Consensus       293 ~~~~~~~~~~~a~~l~~~l~~--~~~~~~~~p~~~~V~f~~~~~----------------------~~~-~~~w~l~~~-  346 (374)
T PLN03032        293 IKRDVQHCMRNAHYLKDRLTE--AGLTCRLNELSSTVVFERPMD----------------------EAF-IKKWQLACE-  346 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh--CCCcEEECCCceEEEEcCCCc----------------------HhH-hheeeeccc-
Confidence            999999999999999999999  588888899999999853210                      011 133222211 


Q ss_pred             eeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        444 PLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       444 ~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                           ++.+|++ +.+.+|++.||++++.|++.
T Consensus       347 -----~~~~hi~-vm~~~~~~~id~fi~dl~~~  373 (374)
T PLN03032        347 -----GDIAHVV-VMPNVTVEKLDEFVEELVEV  373 (374)
T ss_pred             -----CCEEEEE-ECCCCCHHHHHHHHHHHhcc
Confidence                 3589999 66778899999999998764

>PRK02769 histidine decarboxylase; Provisional

Probab=100.00  E-value=1.9e-44  Score=349.72  Aligned_cols=353  Identities=21%  Similarity=0.274  Sum_probs=276.4

Q ss_pred             HHHHHHHHhhccCCccCCCCCccccccCCCCh-HHhHHHHHHHHcCcCCcchhcCh----hhHHHHHHHHHHHHHHhCCC
Q psy12303         54 QKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDV-VSMAGEWLIATANTNMFTYEIAP----VFILMETVVLEKMRQIIGWQ  128 (480)
Q Consensus        54 ~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~----~~~~~e~~~~~~la~~~g~~  128 (480)
                      .+.++.+...+.     +||+++..++..... .+.+++++....+. ...+...+    ...++|+++++|+++++|++
T Consensus         8 ~~~~~~~~~~~~-----~~~~~~~g~p~~~~~~~~~~~~~~~~~~~n-~gnp~~~~~~g~~~~~~e~~~~~~~a~l~g~~   81 (380)
T PRK02769          8 QKEIEDFWLYLR-----HNQYFNVGYPEAADFDYSALKRFFSFSINN-CGDPYSKSNYPLNSFDFERDVMNFFAELFKIP   81 (380)
T ss_pred             HHHHHHHHHHHH-----HhhhcccCCCchhhcCHHHHHHHHHhhhcc-CCCccccCCCCCChHHHHHHHHHHHHHHhCCC
Confidence            344455544443     456666665555554 56777877776654 33444444    36889999999999999997


Q ss_pred             CC--CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCC
Q psy12303        129 GG--DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRL  206 (480)
Q Consensus       129 ~~--~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~  206 (480)
                      +.  .|+||+|||+||+.++.++|+..            |++ +|++|+.+|+|+.++++.+|+   +.+.||++++|++
T Consensus        82 ~~~~~G~~TsGgTean~~a~~~ar~~~------------~~~-~ii~s~~~H~Sv~ka~~~lg~---~~~~V~~~~~g~i  145 (380)
T PRK02769         82 FNESWGYITNGGTEGNLYGCYLARELF------------PDG-TLYYSKDTHYSVSKIARLLRI---KSRVITSLPNGEI  145 (380)
T ss_pred             CCCCCEEEecChHHHHHHHHHHHHHhC------------CCc-EEEeCCCceehHHHHHHHcCC---CCceeccCCCCcC
Confidence            53  47999999999999999998742            323 899999999999999999998   5567888889999


Q ss_pred             CHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcC---cEEEeeccccccccccccccCcccCCCCC
Q psy12303        207 IPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYN---MWLHVDAAWGGGLLLSKKYRHPRLTGIER  283 (480)
Q Consensus       207 d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~---~~l~vD~a~~~~~~~~~~~~~~~~~~~~~  283 (480)
                      |+++|+++|+++   +.+|++|+++++||.+|.+||+++|+++|+++|   +|+||||||+++.+++..... .+...++
T Consensus       146 d~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~-~~d~~~~  221 (380)
T PRK02769        146 DYDDLISKIKEN---KNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPP-PFSFADG  221 (380)
T ss_pred             cHHHHHHHHHhC---CCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccc-cCCccCC
Confidence            999999999875   566999999999999999999999999999998   699999999999887654333 3443348


Q ss_pred             CccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC-CCchHHHHHHHHhcHH
Q psy12303        284 ADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-NDIFKLWLQWRAKGDE  362 (480)
Q Consensus       284 ~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~~l~~~g~~  362 (480)
                      +||+++|+|||+++|.|+|+++++++. +.... ....|+..           .+.++.++|+ +.++++|++|+.+|.+
T Consensus       222 vDsis~s~HK~~~~P~g~G~l~~r~~~-~~~~~-~~~~yl~~-----------~d~t~~GSR~g~~~l~lw~aL~~lg~~  288 (380)
T PRK02769        222 IDSIAISGHKFIGSPMPCGIVLAKKKY-VERIS-VDVDYIGS-----------RDQTISGSRNGHTALLLWAAIRSLGSK  288 (380)
T ss_pred             CCEEEECCcccCCCCCCcEEEEEehhh-hhhcc-cCccccCC-----------CCCCccCCCCcHHHHHHHHHHHHHCHH
Confidence            999999999999999999999999753 33322 23455432           2346678886 4789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEee
Q psy12303        363 GFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGY  442 (480)
Q Consensus       363 ~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~  442 (480)
                      |++++++++.++++++.+.|++  .|++++.+|..++|+|....                   ..+.     +|.. ++.
T Consensus       289 G~~~~~~~~~~la~~l~~~L~~--~g~~~~~~p~~~~v~f~~~~-------------------~~~~-----~~w~-l~~  341 (380)
T PRK02769        289 GLRQRVQHCLDMAQYAVDRLQA--NGIPAWRNPNSITVVFPCPS-------------------ERIW-----KKWH-LAT  341 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh--CCCEEEcCCCceEEEEcCCC-------------------HHHH-----hCee-Ecc
Confidence            9999999999999999999998  69999999999999995321                   1111     3322 221


Q ss_pred             eeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        443 QPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       443 ~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .     +..+|++ +.+.+|++.||.+++.|.+...
T Consensus       342 ~-----~~~~hi~-~~~~~~~~~~~~f~~dl~~~~~  371 (380)
T PRK02769        342 S-----GNQAHII-TMPHHNKQQIDSLIDELIFDLK  371 (380)
T ss_pred             c-----CCEEEEE-ECCCCCHHHHHHHHHHHHHHHh
Confidence            1     3589999 7788899999999999987654

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=100.00  E-value=7.9e-43  Score=340.49  Aligned_cols=343  Identities=36%  Similarity=0.551  Sum_probs=283.9

Q ss_pred             ccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCC--CCCeEECCChhHHHHHHHHHHHHh
Q psy12303         75 FMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQ--GGDSILAPGGSISNLYAFLAARHK  152 (480)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~--~~~~~~t~ggt~a~~~al~~~~~~  152 (480)
                      |++++.+++.+++.+++.+...+|++...|..++...++|+++++|+++++|++  +.+++||+|||+||..++.+++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~   80 (345)
T cd06450           1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDR   80 (345)
T ss_pred             CcccccCCCcHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHH
Confidence            677888889999999999999999999889999999999999999999999996  457999999999999999999875


Q ss_pred             cCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEecc
Q psy12303        153 MFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTS  232 (480)
Q Consensus       153 ~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~  232 (480)
                      ..+..+..+... .++.+|+++..+|+++.+++..+|.   +++.+|+++++.+|+++|++++++...++.++++|++++
T Consensus        81 ~~~~~~~~~~~~-~~~~~v~~~~~~h~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~  156 (345)
T cd06450          81 ARKRLKAGGGRG-IDKLVIVCSDQAHVSVEKAAAYLDV---KVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATA  156 (345)
T ss_pred             hhhhhhcccccc-cCCeEEEEcCcchhHHHHHHHHHhc---CeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEec
Confidence            433222111111 1144899999999999999999887   889999988889999999999998766777799999999


Q ss_pred             CCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhh
Q psy12303        233 GTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLL  312 (480)
Q Consensus       233 ~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~  312 (480)
                      ++|++|.++|+++|.++|+++|+|+|+|+||+.+..+.+.... ...+.+++|++++++|||+++|.++|+++++     
T Consensus       157 ~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~-----  230 (345)
T cd06450         157 GTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRH-LDFGIERVDSISVDPHKYGLVPLGCSAVLVR-----  230 (345)
T ss_pred             ccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHhhChhhHH-HhcCccccCEEEEchhHhhCCCcchHHHHHH-----
Confidence            9999999999999999999999999999999998876554333 3344557999999999999999999988765     


Q ss_pred             HhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        313 ISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       313 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                                                          ++++|++++.++.+++++++++..++++++.+.|++ +++++++
T Consensus       231 ------------------------------------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~-~~~~~~~  273 (345)
T cd06450         231 ------------------------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRA-DPGFELL  273 (345)
T ss_pred             ------------------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEe
Confidence                                                347888899899999999999999999999999999 8999988


Q ss_pred             cCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHH
Q psy12303        393 LEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTE  472 (480)
Q Consensus       393 ~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~  472 (480)
                      .++..++++|++.+..-.+         .  .+.++.++|.++|.+++......+ ..++|+++.++.+|++||+++++.
T Consensus       274 ~~~~~~iv~f~~~~~~~~~---------~--~~~~i~~~L~~~g~~~~~~~~~~~-~~~lRis~~~~~~t~~di~~l~~~  341 (345)
T cd06450         274 GEPNLSLVCFRLKPSVKLD---------E--LNYDLSDRLNERGGWHVPATTLGG-PNVLRFVVTNPLTTRDDADALLED  341 (345)
T ss_pred             cCCceeEEEEEECCcchhh---------H--HHHHHHHHHHhcCCEEEEeeEECC-eEEEEEEecCCCCCHHHHHHHHHH
Confidence            7788889998764321000         1  134677888888777666544444 579999955556799999999999


Q ss_pred             HHHh
Q psy12303        473 MDRL  476 (480)
Q Consensus       473 l~~~  476 (480)
                      |+++
T Consensus       342 l~~~  345 (345)
T cd06450         342 IERA  345 (345)
T ss_pred             HHhC
Confidence            9763

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.3e-38  Score=307.06  Aligned_cols=357  Identities=16%  Similarity=0.105  Sum_probs=273.2

Q ss_pred             CCccccccCCCChHHhHHHHHHHH----cCcCCcchhcChhhHHHHHHHHHHHHHHhCCCC-CCeEECCChhHHHHHHHH
Q psy12303         73 PMFMNQLSCGLDVVSMAGEWLIAT----ANTNMFTYEIAPVFILMETVVLEKMRQIIGWQG-GDSILAPGGSISNLYAFL  147 (480)
Q Consensus        73 p~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~-~~~~~t~ggt~a~~~al~  147 (480)
                      ..|+++..++..|..++......+    .|.+...+..+...++..+++++.+++++|+++ ++++||+|+|+|+.....
T Consensus        23 ~vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~  102 (405)
T COG0520          23 LVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVAR  102 (405)
T ss_pred             eEEecCcccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHH
Confidence            369998888887777774333322    333434555666678888899999999999985 899999999999998887


Q ss_pred             HHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC-CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccE
Q psy12303        148 AARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG-TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPF  226 (480)
Q Consensus       148 ~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~-~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~  226 (480)
                      +....           ..+|+ +|+++..+|+|....+..+... +.+++.+|.+++|.++.+++++.+++.      |+
T Consensus       103 ~l~~~-----------~~~gd-eIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~~------Tk  164 (405)
T COG0520         103 GLGRS-----------LKPGD-EIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPK------TK  164 (405)
T ss_pred             Hhhhh-----------hcCCC-EEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCCC------ce
Confidence            76421           01555 8999999999977766665321 228999999999999999999988776      99


Q ss_pred             EEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEE
Q psy12303        227 FVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHF  306 (480)
Q Consensus       227 ~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~  306 (480)
                      +|.+++.+|.+|.+.|+++|+++||++|+|++||++|+.+.++.+....       ++|++.+|+|||+++|.|+|++++
T Consensus       165 lvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l-------~~Df~afsgHKwl~gP~GiGvLy~  237 (405)
T COG0520         165 LVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQEL-------GCDFLAFSGHKWLLGPTGIGVLYV  237 (405)
T ss_pred             EEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhc-------CCCEEEEcccccccCCCceEEEEE
Confidence            9999999999999999999999999999999999999999999998777       999999999999999999999999


Q ss_pred             eCchhhHhhhcCCcccccccccc------cCcccCCCCccccCCCCC--CchHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q psy12303        307 KQDGLLISCNQMSAEYLFMQDKL------YDVRYDTGDKVIQCGRHN--DIFKLWLQWRAKGDEGFEKQIDRLMELAEYM  378 (480)
Q Consensus       307 ~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~r~~--~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l  378 (480)
                      ++.. +...    .++..+....      ....+....+.++.|...  .++.+-++++.+...|++++.++.+++++++
T Consensus       238 r~~~-l~~l----~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~  312 (405)
T COG0520         238 RKEL-LEEL----EPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYL  312 (405)
T ss_pred             chHH-Hhhc----CCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            8653 3332    2332222111      011122222333334332  5566677788777888999999999999999


Q ss_pred             HHHHhcCCCCeEEecCC---ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC--------C
Q psy12303        379 VKKIKSMPDKFYLILEP---EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN--------D  447 (480)
Q Consensus       379 ~~~l~~~~~g~~~~~~~---~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~--------~  447 (480)
                      .+.|++ +|++++++++   ..++++|......                ..++...|.++| +++..+...        +
T Consensus       313 ~~~L~~-~~~v~i~g~~~~~r~~~vsF~v~~~~----------------~~dv~~~L~~~g-I~vr~g~~ca~p~~~~~~  374 (405)
T COG0520         313 LEGLSE-LPGVEIYGPPDADRGGIVSFNVKGIH----------------PHDVATLLDEKG-IAVRAGHHCAQPLHRLLG  374 (405)
T ss_pred             HHHHhc-CCCeEEecCCcccCceEEEEEeCCCC----------------HHHHHHHHHhCC-eEEEeccccccHHHHhcC
Confidence            999999 9999999876   5778888653221                357888899999 444432211        1


Q ss_pred             cccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        448 LPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       448 ~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      ....+|+| +++++|++|||+++++|+++.+
T Consensus       375 ~~~~iR~S-~~~YNt~edid~l~~aL~~~~~  404 (405)
T COG0520         375 VDATIRAS-LHLYNTEEDVDRLLEALKKALA  404 (405)
T ss_pred             CCCceEEE-EeecCCHHHHHHHHHHHHHHhh
Confidence            12349999 9999999999999999998753

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=100.00  E-value=6.4e-37  Score=286.06  Aligned_cols=351  Identities=17%  Similarity=0.158  Sum_probs=250.6

Q ss_pred             CCccccccCCCChHHhHHHHHH---H-HcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHH
Q psy12303         73 PMFMNQLSCGLDVVSMAGEWLI---A-TANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLA  148 (480)
Q Consensus        73 p~~~~~~~~~~~~~~~~~~~l~---~-~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~  148 (480)
                      +.|++|..+.+..+.++..++.   . +.|++. .+..+..+..+-++.++.+++++|+++.+++||+||||+|..+|+.
T Consensus         2 miYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS-~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g   80 (386)
T COG1104           2 MIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSS-LHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKG   80 (386)
T ss_pred             cccccccccCCCCHHHHHHHHHHHHhhcCCccc-hhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHh
Confidence            4688886666555556554333   2 345544 3444555667777889999999999989999999999999999997


Q ss_pred             HHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEE
Q psy12303        149 ARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFV  228 (480)
Q Consensus       149 ~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v  228 (480)
                      +....    ....    .|+ .|+++..+|+++...++.+...+.+|.++|++.+|.+|+++|+++|+++      |.+|
T Consensus        81 ~~~a~----~~~~----~~~-HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~------T~LV  145 (386)
T COG1104          81 AALAY----RNAQ----KGK-HIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPD------TILV  145 (386)
T ss_pred             hHHhh----hccc----CCC-eEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCC------ceEE
Confidence            54321    0000    123 8999999999999999999222229999999999999999999999988      9999


Q ss_pred             EeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeC
Q psy12303        229 NCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQ  308 (480)
Q Consensus       229 ~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~  308 (480)
                      .+.+.+|.+|++.|+++|.++||+++++||+|++++.|.++.+....       ++|++++|.||+.+ |.|+|++|+++
T Consensus       146 Sim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~-------~vD~ls~SaHK~~G-pkGiGaLyv~~  217 (386)
T COG1104         146 SIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEEL-------GVDLLSFSAHKFGG-PKGIGALYVRP  217 (386)
T ss_pred             EEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCceecccccc-------CcceEEeehhhccC-CCceEEEEECC
Confidence            99999999999999999999999999999999999999999888776       79999999999977 89999999965


Q ss_pred             chhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy12303        309 DGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDK  388 (480)
Q Consensus       309 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g  388 (480)
                      ...+       .+.+.+..++.+.+  .|+-++     ..+.++..+++ +..+.++....+...++++|.+.|.+..|+
T Consensus       218 ~~~~-------~p~i~GGgQE~g~R--sGTenv-----~~Ivg~~~A~~-~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~  282 (386)
T COG1104         218 GVRL-------EPLIHGGGQERGLR--SGTENV-----PGIVGFGKAAE-IAVEELEEENARLRKLRDRLEDGLLEIIPD  282 (386)
T ss_pred             CCcc-------CceeccCcCCCCCC--CCCccH-----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            4322       23343433331111  111110     12233333333 246777888899999999999999973488


Q ss_pred             eEEecCC--ce-eEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhccc------EEEeeeeeC-------C-----
Q psy12303        389 FYLILEP--EM-VNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGT------MMVGYQPLN-------D-----  447 (480)
Q Consensus       389 ~~~~~~~--~~-~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~------~~~~~~~~~-------~-----  447 (480)
                      +.+.+.+  .. ++++|.+.  .+.+              +.+.-.|...|+      .+.+.....       |     
T Consensus       283 ~~~~g~~~~rlP~~~~~~f~--gv~g--------------E~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~  346 (386)
T COG1104         283 VYLNGDDEPRLPNILNFSFP--GVEG--------------ESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEEL  346 (386)
T ss_pred             EEEcCCcccCCCCeEEEEeC--CCcH--------------HHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHH
Confidence            8886643  22 33334332  1111              223333334442      222110000       1     


Q ss_pred             cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        448 LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       448 ~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ....+||| .+..+|++||+++++.++++++.
T Consensus       347 a~~siR~S-~g~~tt~eei~~~~~~l~~~i~~  377 (386)
T COG1104         347 AHGSIRFS-LGRFTTEEEIDAAAEALKEIIKR  377 (386)
T ss_pred             hCccEEEE-cCCCCCHHHHHHHHHHHHHHHHH
Confidence            15789999 88999999999999999988764

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=100.00  E-value=4.2e-36  Score=296.09  Aligned_cols=368  Identities=20%  Similarity=0.287  Sum_probs=272.9

Q ss_pred             CCHHHHHHHHHhhccCCccCCCCCccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCC
Q psy12303         51 LPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGG  130 (480)
Q Consensus        51 ~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~  130 (480)
                      .++.++++.+++....+....  +|++.+.+++.+. +. +.+..++..+.......+....+++++++++++++|+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~   77 (371)
T PRK13520          2 LSEEEILEELEEYRSEDLKYE--RILSSMCTEPHPI-AR-KAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDA   77 (371)
T ss_pred             CCHHHHHHHHHHHHhcCCCHH--HeeeeeecCchHH-HH-HHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCC
Confidence            457889999998888777666  4787776665554 22 3343433333222222355677888999999999999877


Q ss_pred             CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHH
Q psy12303        131 DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSE  210 (480)
Q Consensus       131 ~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~  210 (480)
                      .+++++|||+||..++.++++...          .+++ +|+++..+|+++.++++..|+   +++.+|.++++.+|+++
T Consensus        78 ~~~~~~ggt~a~~~a~~~~~~~~~----------~~~~-~vl~~~~~h~s~~~~~~~~g~---~~~~v~~~~~~~~d~~~  143 (371)
T PRK13520         78 YGYITSGGTEANIQAVRAARNLAK----------AEKP-NIVVPESAHFSFDKAADMLGV---ELRRAPLDDDYRVDVKA  143 (371)
T ss_pred             CeEEecCcHHHHHHHHHHHHhhcc----------CCCc-eEEecCcchHHHHHHHHHcCc---eEEEecCCCCCcCCHHH
Confidence            889999999999999988875310          0223 799999999999999999887   78899998889999999


Q ss_pred             HHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeC
Q psy12303        211 LERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWN  290 (480)
Q Consensus       211 L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s  290 (480)
                      |+++++++      +++|++++++|++|.+.|+++|.++|+++|+++|||++|+++..+......+......++|+++++
T Consensus       144 l~~~i~~~------~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s  217 (371)
T PRK13520        144 VEDLIDDN------TIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITID  217 (371)
T ss_pred             HHHHHhhC------CEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEEC
Confidence            99999875      778888889999999999999999999999999999999987653222111001112378999999


Q ss_pred             ccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC-CCchHHHHHHHHhcHHHHHHHHH
Q psy12303        291 PHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-NDIFKLWLQWRAKGDEGFEKQID  369 (480)
Q Consensus       291 ~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~~l~~~g~~~~~~~~~  369 (480)
                      +|||+++|.++|+++++++..+.... ...+|+....          .....+++. ..+.+++.+++.++.++++++.+
T Consensus       218 ~~K~~~a~~~~G~~~~~~~~~~~~l~-~~~~~~~~~~----------~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~  286 (371)
T PRK13520        218 PHKMGLAPIPAGGILFRDESYLDALA-VDTPYLTSKK----------QATLTGTRSGAGVAATYAVMKYLGREGYRKVVE  286 (371)
T ss_pred             CccccCccCCceEEEEcCHHHHHhhc-ccCccccCCC----------CcceEeeccChHHHHHHHHHhhhcHhHHHHHHH
Confidence            99999988999999988776554432 2233432211          111123333 24677888898888899999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcc
Q psy12303        370 RLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLP  449 (480)
Q Consensus       370 ~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~  449 (480)
                      +..++++++.+.|++ . |++++.++..+++++.+.  .                ..++.+.|.++|+. +...  .. .
T Consensus       287 ~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~v~~~~~--~----------------~~~v~~~L~~~gi~-v~~~--~~-~  342 (371)
T PRK13520        287 RCMENTRWLAEELKE-R-GFEPVIEPVLNIVAFDDP--N----------------PDEVREKLRERGWR-VSVT--RC-P  342 (371)
T ss_pred             HHHHHHHHHHHHHHh-C-CCEEecCCCceEEEEecC--C----------------HHHHHHHHHHCCce-eccC--CC-C
Confidence            999999999999999 5 888545666666666432  1                23567778788744 3321  12 4


Q ss_pred             cEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        450 NFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       450 ~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .++|++ +++.+|++||+++++.|+++++
T Consensus       343 ~~iRis-~~~~~t~edi~~~~~~l~~~~~  370 (371)
T PRK13520        343 EALRIV-CMPHVTREHIENFLEDLKEVKK  370 (371)
T ss_pred             CEEEEE-EECCCCHHHHHHHHHHHHHHhh
Confidence            689999 7778999999999999998765

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=100.00  E-value=6.1e-35  Score=287.93  Aligned_cols=369  Identities=20%  Similarity=0.286  Sum_probs=268.4

Q ss_pred             CHHHHHHHHHhhccCCccCCCCCccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCC
Q psy12303         52 PLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGD  131 (480)
Q Consensus        52 ~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~  131 (480)
                      +.+++++.+.+.+..+++.++++++..+...+.+...  +....+...+.......+....+++++++++++++|+++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~   78 (373)
T TIGR03812         1 SEEEVLEELKEYRSEDLKYSDGRILGSMCTNPHPIAV--KAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDAY   78 (373)
T ss_pred             CHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCchHHHH--HHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCC
Confidence            3578899999998999999999988887776665532  22333322222111223556788899999999999998878


Q ss_pred             eEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHH
Q psy12303        132 SILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSEL  211 (480)
Q Consensus       132 ~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L  211 (480)
                      +++++|+|+++..++.+++....     .+   .+|+ .|+++..+|+++.++++..|+   +++.+|+++++.+|+++|
T Consensus        79 ~~~~~g~~~~~~~~~~~~~~~~~-----~~---~~g~-~vl~~~~~h~~~~~~~~~~G~---~~~~v~~~~~~~~d~~~l  146 (373)
T TIGR03812        79 GYIVSGGTEANIQAVRAAKNLAR-----EE---KRTP-NIIVPESAHFSFEKAAEMLGL---ELRYAPLDEDYTVDVKDV  146 (373)
T ss_pred             eEEeccHHHHHHHHHHHHHHHHh-----cc---CCCc-EEEECCcchHHHHHHHHHcCC---eEEEEeeCCCCCcCHHHH
Confidence            89999999999999887764210     01   1334 788999999999999999988   889999988899999999


Q ss_pred             HHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccc---cCcccCCCCCCccce
Q psy12303        212 ERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKY---RHPRLTGIERADSVT  288 (480)
Q Consensus       212 ~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~---~~~~~~~~~~~D~~~  288 (480)
                      +++++++      +..+++..++|++|.++|+++|.++|+++|+|+|+|+||+++.......   ..+......++|+++
T Consensus       147 ~~~l~~~------~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~  220 (373)
T TIGR03812       147 EDLIDDN------TIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSIT  220 (373)
T ss_pred             HHHHhhC------cEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEE
Confidence            9999765      5455555588999999999999999999999999999999776432210   000111123789999


Q ss_pred             eCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC-CCchHHHHHHHHhcHHHHHHH
Q psy12303        289 WNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-NDIFKLWLQWRAKGDEGFEKQ  367 (480)
Q Consensus       289 ~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~~l~~~g~~~~~~~  367 (480)
                      +++|||+.+|.++|++++++++.+.... ...+|+....          .....+++. ....+++.+++.++.+++++.
T Consensus       221 ~s~~K~~~~~~~~G~~~~~~~~~~~~l~-~~~~~~~~~~----------~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~  289 (373)
T TIGR03812       221 IDPHKMGLSPIPAGGILFRSKSYLKYLS-VDAPYLTVKK----------QATITGTRSGASAAATYAVIKYLGREGYRKI  289 (373)
T ss_pred             ECccccCCCcCCceEEEEeCHHHHhhhc-ccCcccCCCC----------CcceEeechhHHHHHHHHHHHHhCHHHHHHH
Confidence            9999998888889888877776654432 2233432211          111223443 356778888888899999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCC
Q psy12303        368 IDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLND  447 (480)
Q Consensus       368 ~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~  447 (480)
                      .++..+++++|++.|++ + +++.+.+|..+.++|...  .                ..++.++|.++|++ +...  .+
T Consensus       290 ~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~v~~~~~--~----------------~~~v~~~L~~~gi~-v~~~--~~  346 (373)
T TIGR03812       290 VAECMENTRYLVEELKK-I-GFEPVIEPVLNIVAFEVD--D----------------PEEVRKKLRDRGWY-VSVT--RC  346 (373)
T ss_pred             HHHHHHHHHHHHHHHHh-C-CCeEEcCCCceEEEEEeC--C----------------HHHHHHHHHHCCce-eccC--CC
Confidence            99999999999999999 5 565444566677766432  1                12566778788744 3332  12


Q ss_pred             cccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        448 LPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       448 ~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                       ..++|++ ++..+|++|++++++.|+++
T Consensus       347 -~~~iRis-~~~~~t~edid~l~~~L~~~  373 (373)
T TIGR03812       347 -PKALRIV-VMPHVTREHIEEFLEDLKEI  373 (373)
T ss_pred             -CCEEEEE-EECCCCHHHHHHHHHHHhhC
Confidence             4689999 77789999999999999863

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=100.00  E-value=9.2e-33  Score=274.61  Aligned_cols=355  Identities=14%  Similarity=0.086  Sum_probs=251.1

Q ss_pred             CCccccccCCCChHHhHHHHHHHHcC-----cCCcchhcChhhHHHHHHHHHHHHHHhCC-CCCCeEECCChhHHHHHHH
Q psy12303         73 PMFMNQLSCGLDVVSMAGEWLIATAN-----TNMFTYEIAPVFILMETVVLEKMRQIIGW-QGGDSILAPGGSISNLYAF  146 (480)
Q Consensus        73 p~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~e~~~~~~la~~~g~-~~~~~~~t~ggt~a~~~al  146 (480)
                      ..|+++...++.+..++..+ ..++.     .....+..+....+...++++.+++++|+ +++++++|+|+|+++..++
T Consensus        20 ~~yld~a~~~~~~~~v~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~   98 (401)
T PRK10874         20 GVYLDSAATALKPQAVIEAT-QQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVA   98 (401)
T ss_pred             eEEEeCCcccCCCHHHHHHH-HHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHH
Confidence            46999998888888777433 33322     11122223344566677889999999999 6788999999999999888


Q ss_pred             HHHHHhcCchhHhcCCCccCCceEEEecCCCchhH----HHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCC
Q psy12303        147 LAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV----RSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKG  222 (480)
Q Consensus       147 ~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~----~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~  222 (480)
                      .+.....        .  .||+ .|++++.+|++.    ...++..|+   +++.+|.+.++.+|+++++++++++    
T Consensus        99 ~~~~~~~--------~--~~gd-~vl~~~~~~~s~~~~~~~~~~~~g~---~v~~v~~~~~~~~d~~~l~~~i~~~----  160 (401)
T PRK10874         99 QSYARPR--------L--QPGD-EIIVSEAEHHANLVPWLMVAQQTGA---KVVKLPLGADRLPDVDLLPELITPR----  160 (401)
T ss_pred             HHhhhcc--------C--CCcC-EEEECCcchHHHHHHHHHHHHHhCC---EEEEEecCCCCcCCHHHHHHhcCcC----
Confidence            7763210        0  1445 889999999874    445566676   8899999888899999999999765    


Q ss_pred             CccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccce
Q psy12303        223 DIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCS  302 (480)
Q Consensus       223 ~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g  302 (480)
                        |++|++++++|+||.+.|+++|.++|+++|+++++|++|+.+..+.+....       ++|++++|+||++ +|.|+|
T Consensus       161 --t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~-------~~d~~~~s~~K~~-gp~G~G  230 (401)
T PRK10874        161 --TRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQAL-------DIDFYAFSGHKLY-GPTGIG  230 (401)
T ss_pred             --cEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhc-------CCCEEEEeccccc-CCCccE
Confidence              899999999999999999999999999999999999999877665544333       6899999999965 588999


Q ss_pred             EEEEeCchhhHhhhcCCcccccccccccC---cccCC--CCccccCCCC--CCchHHHHHHHHhcHHHHHHHHHHHHHHH
Q psy12303        303 TIHFKQDGLLISCNQMSAEYLFMQDKLYD---VRYDT--GDKVIQCGRH--NDIFKLWLQWRAKGDEGFEKQIDRLMELA  375 (480)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~--~~~~~~~~r~--~~~l~~~~~l~~~g~~~~~~~~~~~~~l~  375 (480)
                      ++++++ +.+...    .++..+......   ..+..  ..+.++.|..  ...+++..++..+...++.+..++..+++
T Consensus       231 ~l~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~  305 (401)
T PRK10874        231 VLYGKS-ELLEAM----SPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLA  305 (401)
T ss_pred             EEEEch-HHHhcC----CCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            999764 343332    122211100000   00000  1111222222  14556666777666667777888889999


Q ss_pred             HHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeee-------CCc
Q psy12303        376 EYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPL-------NDL  448 (480)
Q Consensus       376 ~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~-------~~~  448 (480)
                      +++.+.|++ +||++++.++..++++|.+.  ...              ..++.+.|.++|+++......       .+.
T Consensus       306 ~~l~~~l~~-~~g~~~~~~~~~~i~~~~~~--~~~--------------~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~  368 (401)
T PRK10874        306 TLAEDALAK-LPGFRSFRCQDSSLLAFDFA--GVH--------------HSDLVTLLAEYGIALRAGQHCAQPLLAALGV  368 (401)
T ss_pred             HHHHHHHhc-CCCEEEeCCCCCcEEEEEEC--CcC--------------HHHHHHHHHHCCcEEeccccchHHHHHHhCC
Confidence            999999999 89999887777777777542  111              235667777777544332211       122


Q ss_pred             ccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        449 PNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       449 ~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+++|+| +++++|++||+++++.|+++++.
T Consensus       369 ~~~iRiS-~~~~nt~edid~ll~al~~~~~~  398 (401)
T PRK10874        369 TGTLRAS-FAPYNTQSDVDALVNAVDRALEL  398 (401)
T ss_pred             CCEEEEE-ecccCCHHHHHHHHHHHHHHHHH
Confidence            4699999 88899999999999999988764

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=100.00  E-value=1.1e-32  Score=273.86  Aligned_cols=354  Identities=13%  Similarity=0.056  Sum_probs=249.4

Q ss_pred             CCccccccCCCChHHhHHHHHHHHcC---cCC--cchhcChhhHHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHH
Q psy12303         73 PMFMNQLSCGLDVVSMAGEWLIATAN---TNM--FTYEIAPVFILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAF  146 (480)
Q Consensus        73 p~~~~~~~~~~~~~~~~~~~l~~~~~---~~~--~~~~~~~~~~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al  146 (480)
                      ..|+++..+++.+..++. .+..++.   .+.  ..+..++...+...++++.+++++|.+ ++++++|+|+|+++..++
T Consensus        17 ~iyld~a~~~~~p~~v~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~   95 (398)
T TIGR03392        17 TVYLDSAATALKPQAVID-ATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVA   95 (398)
T ss_pred             eEEeeCccccCCCHHHHH-HHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHH
Confidence            369999988888877764 3333322   121  222233444566678899999999994 678999999999999888


Q ss_pred             HHHHHhcCchhHhcCCCccCCceEEEecCCCchhH----HHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCC
Q psy12303        147 LAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV----RSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKG  222 (480)
Q Consensus       147 ~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~----~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~  222 (480)
                      .+.....          ..||+ .|+++..+|++.    ...++..|+   +++.+|++.++.+|+++|+++++++    
T Consensus        96 ~~~~~~~----------~~~gd-~Vl~~~~~~~s~~~~~~~~~~~~g~---~v~~v~~~~~~~~~~~~l~~~i~~~----  157 (398)
T TIGR03392        96 QSYARPR----------LQPGD-EIIVSEAEHHANLIPWLMVAQQTGA---KVVKLPIGADLLPDIRQLPELLTPR----  157 (398)
T ss_pred             HHhhhcc----------CCCCC-EEEECCcchhHHHHHHHHHHHHcCc---EEEEEecCCCCCcCHHHHHHHhccC----
Confidence            7763210          01445 889999999874    345566677   8899999888889999999999765    


Q ss_pred             CccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccce
Q psy12303        223 DIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCS  302 (480)
Q Consensus       223 ~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g  302 (480)
                        |++|++++++|++|.+.|+++|.++|+++|+++++|++|+.+..+.+....       ++|++++|+||++ +|.|+|
T Consensus       158 --t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~-------~~d~~~~s~~K~~-gp~G~G  227 (398)
T TIGR03392       158 --TRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQAL-------DIDFYAFSGHKLY-GPTGIG  227 (398)
T ss_pred             --ceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhc-------CCCEEEEeccccc-CCCceE
Confidence              899999999999999999999999999999999999999877665544333       6899999999965 578999


Q ss_pred             EEEEeCchhhHhhhcCCcccccccccc-cC--cccCC--CCccccCCCC-C-CchHHHHHHHHhcHHHHHHHHHHHHHHH
Q psy12303        303 TIHFKQDGLLISCNQMSAEYLFMQDKL-YD--VRYDT--GDKVIQCGRH-N-DIFKLWLQWRAKGDEGFEKQIDRLMELA  375 (480)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~--~~~~~--~~~~~~~~r~-~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~  375 (480)
                      ++++++ +.+...    .++..+.... ..  ..+.+  ....++.|.. . ..+++..+++.+...+++++.++..+++
T Consensus       228 ~l~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~  302 (398)
T TIGR03392       228 VLYGKT-ELLEAM----PPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLA  302 (398)
T ss_pred             EEEEcH-HHHhhC----CCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            998764 343332    1222111000 00  00000  0011222222 1 4556677777666667778889999999


Q ss_pred             HHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeee--------CC
Q psy12303        376 EYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPL--------ND  447 (480)
Q Consensus       376 ~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~--------~~  447 (480)
                      +++.+.|.+ +++++++..+...+++|...  ...              ..++.+.|.+.|+. +..+..        .+
T Consensus       303 ~~l~~~l~~-l~g~~~~~~~~~~i~~~~~~--~~~--------------~~~l~~~L~~~gI~-v~~g~~~~~~~~~~~g  364 (398)
T TIGR03392       303 DLAEERLAQ-LPGFRSFRCPGSSLLAFDFA--GVH--------------HSDLAALLAESGIA-LRAGQHCAQPLMAALG  364 (398)
T ss_pred             HHHHHHHhc-CCCeEEeCCCCCcEEEEEeC--CcC--------------HHHHHHHHHhCCEE-EecCccchHHHHHHhC
Confidence            999999999 89999876676677777532  111              23566777777744 432221        01


Q ss_pred             cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        448 LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       448 ~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ..+++|+| +++++|++||+++++.|+++++.
T Consensus       365 ~~~~iRvS-~~~~~t~~ei~~l~~~l~~~~~~  395 (398)
T TIGR03392       365 VSGTLRAS-FAPYNTQQDVDALVDAVGAALEL  395 (398)
T ss_pred             CCCEEEEE-eeccCCHHHHHHHHHHHHHHHHH
Confidence            24699999 88899999999999999988764

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=100.00  E-value=9.6e-33  Score=274.67  Aligned_cols=354  Identities=14%  Similarity=0.081  Sum_probs=248.8

Q ss_pred             CCccccccCCCChHHhHHHHHHHH----cCcCCcchhcChhhHHHHHHHHHHHHHHhCC-CCCCeEECCChhHHHHHHHH
Q psy12303         73 PMFMNQLSCGLDVVSMAGEWLIAT----ANTNMFTYEIAPVFILMETVVLEKMRQIIGW-QGGDSILAPGGSISNLYAFL  147 (480)
Q Consensus        73 p~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~-~~~~~~~t~ggt~a~~~al~  147 (480)
                      ..|+++..+++.+..++..+....    .|+....+..++...+...++++.+++++|. ++.+++||+|+|+++..++.
T Consensus        24 ~iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~  103 (406)
T PRK09295         24 LAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVAN  103 (406)
T ss_pred             eEEEeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHH
Confidence            379999999888887774333222    1222223333455566677789999999998 56789999999999988876


Q ss_pred             HHHHhcCchhHhcCCCccCCceEEEecCCCchhH----HHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCC
Q psy12303        148 AARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV----RSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGD  223 (480)
Q Consensus       148 ~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~----~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~  223 (480)
                      +......          .||+ .|+++..+|++.    ...++..|+   +++.+|.++++.+|+++|+++++++     
T Consensus       104 ~~~~~~~----------~~gd-~vl~~~~~~~s~~~~~~~~~~~~g~---~v~~v~~~~~~~~d~~~l~~~i~~~-----  164 (406)
T PRK09295        104 SWGNSNV----------RAGD-NIIISEMEHHANIVPWQMLCARVGA---ELRVIPLNPDGTLQLETLPALFDER-----  164 (406)
T ss_pred             HhhhhcC----------CCcC-EEEECcchhhHHHHHHHHHHHHcCc---EEEEEecCCCCCCCHHHHHHhcCCC-----
Confidence            6422100          1445 788999898875    344455666   8899999888999999999998765     


Q ss_pred             ccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceE
Q psy12303        224 IPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCST  303 (480)
Q Consensus       224 ~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~  303 (480)
                       |++|++++++|++|.+.|+++|.++|+++|+++++|++|+.+..+.+...+       ++|++++|+||++ +|.|+|+
T Consensus       165 -t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~-------~~D~~~~s~~K~~-gp~G~G~  235 (406)
T PRK09295        165 -TRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQAL-------DCDFYVFSGHKLY-GPTGIGI  235 (406)
T ss_pred             -cEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhc-------CCCEEEeehhhcc-CCCCcEE
Confidence             899999999999999999999999999999999999999988776655444       7899999999955 5889999


Q ss_pred             EEEeCchhhHhhhcCCccccccccc------ccCcccCCCCccccCCCC--CCchHHHHHHHHhcHHHHHHHHHHHHHHH
Q psy12303        304 IHFKQDGLLISCNQMSAEYLFMQDK------LYDVRYDTGDKVIQCGRH--NDIFKLWLQWRAKGDEGFEKQIDRLMELA  375 (480)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~r~--~~~l~~~~~l~~~g~~~~~~~~~~~~~l~  375 (480)
                      ++++++ .+...    +++..+...      .....+..+...++.|.+  ...+++..+++.+...|++++.++..+++
T Consensus       236 l~~~~~-~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~  310 (406)
T PRK09295        236 LYVKEA-LLQEM----PPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLM  310 (406)
T ss_pred             EEEchH-hHhhC----CCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            998754 33322    222221110      000000001111222222  14566777777766667888889999999


Q ss_pred             HHHHHHHhcCCCCeEEecCC-ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeee--------C
Q psy12303        376 EYMVKKIKSMPDKFYLILEP-EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPL--------N  446 (480)
Q Consensus       376 ~~l~~~l~~~~~g~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~--------~  446 (480)
                      +++.+.|.+ +++++++++. ..++++|....  ..              ..++.+.|.+.|+. +..+..        .
T Consensus       311 ~~l~~~l~~-~~~~~~~~~~~~~~iv~~~~~~--~~--------------~~~~~~~L~~~gI~-v~~g~~c~~~~~~~~  372 (406)
T PRK09295        311 HYALSQLES-VPDLTLYGPQNRLGVIAFNLGK--HH--------------AYDVGSFLDNYGIA-VRTGHHCAMPLMAYY  372 (406)
T ss_pred             HHHHHHHhc-CCCEEEeCCCCCceEEEEEECC--cC--------------HHHHHHHHHhCCeE-EeccccchHHHHHHH
Confidence            999999999 8999998652 35677775321  11              13455667666643 332110        1


Q ss_pred             CcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        447 DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       447 ~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      +..+++|+| +++++|++|||+++++|+++.+
T Consensus       373 ~~~~~iRiS-~~~ynt~~did~l~~~l~~i~~  403 (406)
T PRK09295        373 NVPAMCRAS-LAMYNTHEEVDRLVAGLQRIHR  403 (406)
T ss_pred             CCCCEEEEE-ccCCCCHHHHHHHHHHHHHHHH
Confidence            123589999 9999999999999999998754

>KOG1383|consensus

Probab=100.00  E-value=1.5e-32  Score=256.10  Aligned_cols=387  Identities=16%  Similarity=0.169  Sum_probs=291.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHhhccCCccCCC-CC-ccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHH
Q psy12303         43 DLDIPEKGLPLQKLIDDCFTTLKYQVRTGH-PM-FMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK  120 (480)
Q Consensus        43 ~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~-p~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~  120 (480)
                      ...+|++|.+-+++++.+.+.....-+|.- +. +..+ .........+.+.+..+   |....+..|..+++|.++.++
T Consensus        53 ~~~lP~~gl~~d~v~~~i~~~~~ld~~~~~~~vS~~v~-~~~~~~~~l~~~~~~k~---N~l~~d~fp~~~~~e~~~Vnm  128 (491)
T KOG1383|consen   53 FFTLPSKGLPKDAVLELINDELMLDGNPRLGLASGVVY-WGEPELDKLIMEAYNKF---NPLHPDEFPVVRKLEAECVNM  128 (491)
T ss_pred             eecCCCCCCCHHHHHHHHHHHhccCCCcccCeeeEEEe-cCCcchhhHHHHHHhhc---CccCccccchhHHHHHHHHHH
Confidence            377999999999999999776654433322 21 2212 22334444444444433   555556789999999999999


Q ss_pred             HHHHhCCCC-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEee
Q psy12303        121 MRQIIGWQG-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVP  199 (480)
Q Consensus       121 la~~~g~~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~  199 (480)
                      ++.+|+.++ ..+..|+|||+|...+.+..++++..   ++|+.    .+.++++...|.+++++++.+++   +++.||
T Consensus       129 ~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~---~k~I~----~p~iv~~~~v~~a~eK~a~yf~v---~l~~V~  198 (491)
T KOG1383|consen  129 IANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKA---QKGID----KPNIVTPQNVHAAFEKAARYFEV---ELREVP  198 (491)
T ss_pred             HHHHhcCCccccCccccccchHHHHHHHHHHHHHHh---ccCCC----CccccchHHHHHHHHHHHhhEEE---EEEeee
Confidence            999999965 56889999999988888877776321   13542    44899999999999999999999   889999


Q ss_pred             CC-CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHH-cCcEEEeeccccccccc-cccccCc
Q psy12303        200 SD-KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQK-YNMWLHVDAAWGGGLLL-SKKYRHP  276 (480)
Q Consensus       200 ~~-~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~-~~~~l~vD~a~~~~~~~-~~~~~~~  276 (480)
                      ++ .++++|+..+.+.++++      |.+|+.+.|++++|.++|+++|.++..+ +++.+|||+|-|++..+ ......+
T Consensus       199 ~~~~~~~~D~~k~~~~i~eN------ti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~  272 (491)
T KOG1383|consen  199 LDEGDYRVDPGKVVRMIDEN------TIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEE  272 (491)
T ss_pred             ccccceEecHHHHHHHhccc------eEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccc
Confidence            99 57999999999999998      9999999999999999999999999999 99999999999999875 2111111


Q ss_pred             ccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC-CchHHHHH
Q psy12303        277 RLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN-DIFKLWLQ  355 (480)
Q Consensus       277 ~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~-~~l~~~~~  355 (480)
                      .-.+..++-|++.++||++.+|.|.|+++.++++++..-.-....|+.+         .+.+.++.++|+. ..++.|++
T Consensus       273 fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg---------~y~s~TlngSR~g~~va~~wa~  343 (491)
T KOG1383|consen  273 FDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGG---------IYASPTLNGSRPGSQVAAQWAA  343 (491)
T ss_pred             cccCCCCceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCc---------cccCcccccCCcccHHHHHHHH
Confidence            2234447889999999999999999999999998765433333444433         3566788888885 67899999


Q ss_pred             HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhc
Q psy12303        356 WRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQA  435 (480)
Q Consensus       356 l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~  435 (480)
                      +-.+|.+||.+..+++.+.++.|++.|++ +.++.++++|..+.+.|.-..              ++  -.++.+.|.+.
T Consensus       344 ~~~lG~eGY~~~~~~ive~~~~l~egie~-i~~i~i~gkp~vs~~~~~s~~--------------~~--i~elsd~l~~~  406 (491)
T KOG1383|consen  344 LMSLGEEGYRENTQNIVETARKLREGIEN-IKGIKIVGKPLVSFILFGSND--------------VN--IFELSDLLRKK  406 (491)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHhhhc-cccceecCCCcEEEEEccCCc--------------cc--hhhhhHHHHhc
Confidence            99999999999999999999999999999 999999999887777663211              11  12566788889


Q ss_pred             ccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        436 GTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       436 g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      |+.+-.++-..    .+-+|+.-....++-.++++..|++++++
T Consensus       407 GW~lnalq~P~----a~Hi~vt~~~~~~~~A~~~v~Di~~~~~e  446 (491)
T KOG1383|consen  407 GWILNALQFPA----AIHICVTRVHAREDVADRFVADIRKVVEE  446 (491)
T ss_pred             CcCccccCCCC----ceEEEEEeeeccHHHHHHHHHHHHHHHHH
Confidence            98766653322    33344222222344467788877777654

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=100.00  E-value=2.8e-32  Score=269.26  Aligned_cols=342  Identities=16%  Similarity=0.125  Sum_probs=242.1

Q ss_pred             CccccccCCCChHHhHHHHHHHHcC---cCCc-chhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHH
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIATAN---TNMF-TYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAA  149 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~-~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~  149 (480)
                      .||++..+++.+..++. .+..++.   .+.. .+..++...+..+++++++++++|.++++++||+|+|+++..++.++
T Consensus         1 ~yld~aa~~~~~~~v~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~   79 (379)
T TIGR03402         1 IYLDNNATTRVDPEVLE-AMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSA   79 (379)
T ss_pred             CcCCCcCCCCCCHHHHH-HHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHH
Confidence            38899888888887764 3333321   1111 12223445667778999999999998888999999999999999877


Q ss_pred             HHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHc---CCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccE
Q psy12303        150 RHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVC---GLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPF  226 (480)
Q Consensus       150 ~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~---g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~  226 (480)
                      ....            +++.+|+++..+|+++...+..+   |+   +++.+|.++++.+|+++++++++++      ++
T Consensus        80 ~~~~------------~~~~~vv~~~~~~~s~~~~~~~~~~~G~---~v~~v~~~~~g~~~~~~l~~~i~~~------~~  138 (379)
T TIGR03402        80 LAAQ------------PEKRHIITTAVEHPAVLSLCQHLEKQGY---KVTYLPVDEEGRLDLEELRAAITDD------TA  138 (379)
T ss_pred             HHhc------------CCCCeEEEcccccHHHHHHHHHHHHcCC---EEEEEccCCCCcCCHHHHHHhcCCC------cE
Confidence            5310            11338889999999987766554   55   8899999888999999999999765      88


Q ss_pred             EEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEE
Q psy12303        227 FVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHF  306 (480)
Q Consensus       227 ~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~  306 (480)
                      +|++++++|++|.+.|+++|.++|+++|+++|+|++|+.+..+.+....       ++|++++|+|| +++|.|+|++++
T Consensus       139 lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~-------~~D~~~~s~~K-~~gp~G~g~l~v  210 (379)
T TIGR03402       139 LVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEM-------NIDMLSLSGHK-LHGPKGVGALYI  210 (379)
T ss_pred             EEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccCcccC-------CCCEEEEcHHH-cCCCCceEEEEE
Confidence            9999999999999999999999999999999999999988776665555       89999999999 567999999999


Q ss_pred             eCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHh-cC
Q psy12303        307 KQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIK-SM  385 (480)
Q Consensus       307 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~-~~  385 (480)
                      ++...+      . +++.+....  .....++.++     ...+++..+++.+ .+++++..++..++++++.+.|. + 
T Consensus       211 ~~~~~~------~-p~~~g~~~~--~~~~~gt~~~-----~~~~~l~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~~-  274 (379)
T TIGR03402       211 RKGTRF------R-PLLRGGHQE--RGRRAGTENV-----PGIVGLGKAAELA-TEHLEEENTRVRALRDRLEAGLLAR-  274 (379)
T ss_pred             CCCCCC------C-CcccCCccC--CCcCCCCccH-----HHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHhh-
Confidence            765211      1 222111000  0011111111     1233344444443 45678888899999999999998 5 


Q ss_pred             CCCeEEecCCc---eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC--------------C-
Q psy12303        386 PDKFYLILEPE---MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN--------------D-  447 (480)
Q Consensus       386 ~~g~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~--------------~-  447 (480)
                      ++++++.+++.   .+++.|.+....                ..++...|.+.|+. +..+...              + 
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~gI~-v~~g~~c~~~~~~~~~~~~~lg~  337 (379)
T TIGR03402       275 IPDARLNGDPTKRLPNTVNISFEYIE----------------GEAILLLLDMEGIC-ASSGSACTSGSLEPSHVLRAMGV  337 (379)
T ss_pred             CCCEEEeCCCccCCCCEEEEEecCCC----------------HHHHHHhhccCCEE-EEchhhcCCCCCCcCHHHHHcCC
Confidence            68999876532   235555542111                23556667667744 3321100              0 


Q ss_pred             ----cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        448 ----LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       448 ----~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                          ..+.+|+| +++++|++|||++++.|++++++
T Consensus       338 ~~~~~~~~vR~S-~~~~~t~~di~~~~~~l~~~~~~  372 (379)
T TIGR03402       338 PHTAAHGSIRFS-LSRYNTEEDIDYVLEVLPPIIAR  372 (379)
T ss_pred             ChhhcCceEEEE-cCCCCCHHHHHHHHHHHHHHHHH
Confidence                03689999 99999999999999999987653

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=100.00  E-value=4.5e-32  Score=270.11  Aligned_cols=354  Identities=18%  Similarity=0.149  Sum_probs=247.2

Q ss_pred             CccccccCCCChHHhHHHHHHHHc-----CcCCcchhcChhhHHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHH
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIATA-----NTNMFTYEIAPVFILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFL  147 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~  147 (480)
                      .|+++...++.+..++ +.+..++     +++...+..++...+...++++.+++++|.+ ++++++|+|+|+++..++.
T Consensus        20 ~yld~~~~~~~p~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~   98 (403)
T TIGR01979        20 VYLDSAATSQKPQQVI-DAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAY   98 (403)
T ss_pred             EEEeCccccCCCHHHH-HHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHH
Confidence            6999988887777666 4443332     2222222233444556668899999999997 5789999999999888877


Q ss_pred             HHHHhcCchhHhcCCCccCCceEEEecCCCchhHH----HHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCC
Q psy12303        148 AARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR----SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGD  223 (480)
Q Consensus       148 ~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~----~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~  223 (480)
                      ++.....          .||+ .|+++..+|++..    ..+...|.   +++.+++++++.+|+++++++++++     
T Consensus        99 ~~~~~~~----------~~g~-~vl~~~~~~~s~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~l~~~i~~~-----  159 (403)
T TIGR01979        99 SWGDSNL----------KAGD-EIVISEMEHHANIVPWQLLAERTGA---TLKFIPLDDDGTLDLDDLEKLLTEK-----  159 (403)
T ss_pred             HhhhhcC----------CCCC-EEEECcchhhHHHHHHHHHHHhcCc---EEEEEecCCCCCCCHHHHHHHhccC-----
Confidence            6532100          1445 8999999998854    44555666   8899999988999999999999765     


Q ss_pred             ccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceE
Q psy12303        224 IPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCST  303 (480)
Q Consensus       224 ~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~  303 (480)
                       |++|++++++|++|.+.|+++|.++|+++|+++|+|++|+.+..+.+....       ++|++++|+||+++ |.|+|+
T Consensus       160 -~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~-------~~d~~~~s~~K~~g-p~G~g~  230 (403)
T TIGR01979       160 -TKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQAL-------DCDFYVFSGHKMYG-PTGIGV  230 (403)
T ss_pred             -CeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCcccc-------CCCEEEEecccccC-CCCceE
Confidence             899999999999999999999999999999999999999988765544334       78999999999865 889999


Q ss_pred             EEEeCchhhHhhhcCCccccccccccc-----CcccCCCCccccCCCC-C-CchHHHHHHHHhcHHHHHHHHHHHHHHHH
Q psy12303        304 IHFKQDGLLISCNQMSAEYLFMQDKLY-----DVRYDTGDKVIQCGRH-N-DIFKLWLQWRAKGDEGFEKQIDRLMELAE  376 (480)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~r~-~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~  376 (480)
                      +++++. ......    ++..+.....     ...+....+.+..|.. . ..++++.+++.+...++++..++..++++
T Consensus       231 l~~~~~-~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~  305 (403)
T TIGR01979       231 LYGKEE-LLEQMP----PFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTA  305 (403)
T ss_pred             EEEchH-HHhcCC----CeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            998654 333221    1211110000     0000001111222222 1 34566666766655577888899999999


Q ss_pred             HHHHHHhcCCCCeEEecCC----ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeee--------
Q psy12303        377 YMVKKIKSMPDKFYLILEP----EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQP--------  444 (480)
Q Consensus       377 ~l~~~l~~~~~g~~~~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~--------  444 (480)
                      ++.+.|++ +++++++.++    ..++++|.+..  ..              ..++.+.|.+.|+. +..+.        
T Consensus       306 ~l~~~l~~-~~g~~~~~~~~~~~~~~~v~~~~~~--~~--------------~~~~~~~L~~~gI~-v~~g~~~~~~~~~  367 (403)
T TIGR01979       306 YALERLGE-IPGLRIYGPRDAEDRGGIISFNVEG--VH--------------PHDVGTILDEEGIA-VRSGHHCAQPLMR  367 (403)
T ss_pred             HHHHHHhc-CCCEEEeCCCCccccCceEEEEeCC--cC--------------HHHHHHHHhhCCEE-EcchhhhhHHHHH
Confidence            99999999 8899998643    25677776421  11              13456677777743 33211        


Q ss_pred             eCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        445 LNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       445 ~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      ..+..+++|+| +++++|++||+++++.|+++++.|
T Consensus       368 ~~~~~~~iRiS-~~~~~t~~di~~l~~~l~~~~~~~  402 (403)
T TIGR01979       368 RFGVPATCRAS-FYIYNTEEDIDALVEALKKVRKFF  402 (403)
T ss_pred             HhCCCCEEEEE-eccCCCHHHHHHHHHHHHHHHHHh
Confidence            11124689999 889999999999999999987654

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=100.00  E-value=8.2e-32  Score=265.60  Aligned_cols=350  Identities=18%  Similarity=0.159  Sum_probs=245.8

Q ss_pred             ccccccCCCChHHhHHHHHHHH----cCcCCcchhcChhhHHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHH
Q psy12303         75 FMNQLSCGLDVVSMAGEWLIAT----ANTNMFTYEIAPVFILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAA  149 (480)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~  149 (480)
                      |+++...++.++.++..+...+    .++....+..++...+...++++++++++|.+ +.++++|+|+|+++..++.++
T Consensus         2 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l   81 (373)
T cd06453           2 YLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGL   81 (373)
T ss_pred             cccCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHh
Confidence            7888888888877775443332    22222334445666777788999999999997 678999999999999998877


Q ss_pred             HHhcCchhHhcCCCccCCceEEEecCCCchhHH----HHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCcc
Q psy12303        150 RHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR----SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIP  225 (480)
Q Consensus       150 ~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~----~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~  225 (480)
                      ....           .||+ .|+++..+|++..    ..++..|.   +++.|+.+.++.+|+++|+++++++      +
T Consensus        82 ~~~~-----------~~g~-~vl~~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l~~~l~~~------~  140 (373)
T cd06453          82 GRAN-----------KPGD-EIVTSVMEHHSNIVPWQQLAERTGA---KLKVVPVDDDGQLDLEALEKLLTER------T  140 (373)
T ss_pred             hhcC-----------CCCC-EEEECcchhHHHHHHHHHHHhhcCc---EEEEeecCCCCCcCHHHHHHHhcCC------c
Confidence            5410           1334 7889999999854    34445666   8899999888999999999999764      8


Q ss_pred             EEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEE
Q psy12303        226 FFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIH  305 (480)
Q Consensus       226 ~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~  305 (480)
                      ++|++++++|++|.+.|+++|.++|+++|+++|+|++|+.+..+.+....       ++|++++|+|||+++ .++|+++
T Consensus       141 ~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~-------~~d~~~~s~~K~~~~-~g~g~~~  212 (373)
T cd06453         141 KLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDL-------GCDFLAFSGHKMLGP-TGIGVLY  212 (373)
T ss_pred             eEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeecccc-------CCCEEEeccccccCC-CCcEEEE
Confidence            89999999999999999999999999999999999999887765443333       789999999999986 7889888


Q ss_pred             EeCchhhHhhhcCCcccccccccc-cCcccCCCCccccCCCC--CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q psy12303        306 FKQDGLLISCNQMSAEYLFMQDKL-YDVRYDTGDKVIQCGRH--NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKI  382 (480)
Q Consensus       306 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~r~--~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l  382 (480)
                      +++. ...........+....... ....+......+..+..  ...++++.+++.+...+++++.++..++++++.+.|
T Consensus       213 ~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l  291 (373)
T cd06453         213 GKEE-LLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERL  291 (373)
T ss_pred             EchH-HhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            7653 3333221111100000000 00000000001111111  245677888888877888999999999999999999


Q ss_pred             hcCCCCeEEecCC--ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeee--------CCcccEE
Q psy12303        383 KSMPDKFYLILEP--EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPL--------NDLPNFF  452 (480)
Q Consensus       383 ~~~~~g~~~~~~~--~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~--------~~~~~~~  452 (480)
                      ++ +++++++.++  ..+.++|...  ...              ..++.++|.+.|+.+ ..+..        .+..+++
T Consensus       292 ~~-~~~~~~~~~~~~~~~~~~~~~~--~~~--------------~~~i~~~l~~~gi~i-~~g~~~~~~~~~~~~~~~~i  353 (373)
T cd06453         292 SE-IPGVRVYGDAEDRAGVVSFNLE--GIH--------------PHDVATILDQYGIAV-RAGHHCAQPLMRRLGVPGTV  353 (373)
T ss_pred             hc-CCCeEEeCCccccCCeEEEEEC--CcC--------------HHHHHHHHHHCCEEe-ccCccchhHHHHHhCCCCeE
Confidence            99 8899987533  3455666431  111              235677887877543 32111        1224699


Q ss_pred             EEecccCCCCHHHHHHHHHHH
Q psy12303        453 RNIISSAAVTEGDIDFLLTEM  473 (480)
Q Consensus       453 R~~~~~~~~t~~di~~~~~~l  473 (480)
                      |++ +++.+|++|||++++.|
T Consensus       354 Ris-~~~~~t~~di~~~~~~l  373 (373)
T cd06453         354 RAS-FGLYNTEEEIDALVEAL  373 (373)
T ss_pred             EEE-ecCCCCHHHHHHHHhhC
Confidence            999 88999999999999864

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=100.00  E-value=9.7e-32  Score=265.44  Aligned_cols=345  Identities=14%  Similarity=0.120  Sum_probs=239.9

Q ss_pred             ccccccCC-CChHHhHHHHHHHHcCcC-----CcchhcChhhHHHHHHHHHHHHHHhCCCC-CCeEECCChhHHHHHHHH
Q psy12303         75 FMNQLSCG-LDVVSMAGEWLIATANTN-----MFTYEIAPVFILMETVVLEKMRQIIGWQG-GDSILAPGGSISNLYAFL  147 (480)
Q Consensus        75 ~~~~~~~~-~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~e~~~~~~la~~~g~~~-~~~~~t~ggt~a~~~al~  147 (480)
                      ||++..++ +.|..+. +.+...+...     ...|...........++++++++++|.++ .++++|+|+|+++..++.
T Consensus         2 yld~a~~~~~~p~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~   80 (376)
T TIGR01977         2 YFDNAATTYPKPDEVY-EAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALK   80 (376)
T ss_pred             CccCcccCCCCCHHHH-HHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHH
Confidence            67776655 3444444 3333332221     11222222234566778899999999965 479999999999988876


Q ss_pred             HHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH----HHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCC
Q psy12303        148 AARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC----AAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGD  223 (480)
Q Consensus       148 ~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~----~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~  223 (480)
                      +...              +|+ .|+++..+|+++...    ++..|.   +++.++.++++.+|+++|+++++++     
T Consensus        81 ~~~~--------------~gd-~vl~~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l~~~~~~~-----  137 (376)
T TIGR01977        81 GLLK--------------EGD-HVITTPMEHNSVARPLECLKEQIGV---EITIVKCDNEGLISPERIKRAIKTN-----  137 (376)
T ss_pred             hccC--------------CCC-EEEECcchhhHHHHHHHHHHHHcCc---EEEEEecCCCCCcCHHHHHHhcCCC-----
Confidence            6422              445 788888899887543    344466   8889998888899999999999654     


Q ss_pred             ccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceE
Q psy12303        224 IPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCST  303 (480)
Q Consensus       224 ~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~  303 (480)
                       +++|++++++|++|.+.|+++|.++|+++|+++++|++++.+..+.+....       ++|++++++|||+++|.|+|+
T Consensus       138 -~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~-------~~D~~~~s~~K~l~~p~g~g~  209 (376)
T TIGR01977       138 -TKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTEL-------AIDMLAFTGHKGLLGPQGTGG  209 (376)
T ss_pred             -CeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCCchhc-------CCCEEEecccccccCCCCceE
Confidence             889999999999999999999999999999999999999999887665455       899999999999999999999


Q ss_pred             EEEeCchhhHhhhcCCccc---ccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q psy12303        304 IHFKQDGLLISCNQMSAEY---LFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVK  380 (480)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~  380 (480)
                      +++++...+.........+   ..........+++.++...     ....+++.+++.+...|++.+.++..++++++.+
T Consensus       210 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~-----~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~  284 (376)
T TIGR01977       210 LYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNT-----PGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLN  284 (376)
T ss_pred             EEEcCCcCcCceecCCCccccccccccccchhhccCCCCCH-----HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            9998875222111100000   0000000000111111110     1345666777777788888999999999999999


Q ss_pred             HHhcCCCCeEEecCC----ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeC---------
Q psy12303        381 KIKSMPDKFYLILEP----EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPLN---------  446 (480)
Q Consensus       381 ~l~~~~~g~~~~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~---------  446 (480)
                      .|.+ .++++++.+.    ...+++|...  ...              ..++.+.|.+. | +.+..+...         
T Consensus       285 ~l~~-~~~~~~~~~~~~~~~~~~v~~~~~--~~~--------------~~~~~~~L~~~~g-i~v~~g~~~~~~~~~~~g  346 (376)
T TIGR01977       285 GLRE-INKVKIYGPADPANRVGVVSFTVE--GID--------------SEEVADILDEKFD-IATRTGLHCAPLAHKTIG  346 (376)
T ss_pred             HHhc-CCCeEEeCCCCccccCCeEEEEEC--CCC--------------HHHHHHHHhccCC-EEEEcccccchHHHHHhC
Confidence            9998 8999987642    2456666542  111              23566777776 5 433322110         


Q ss_pred             -CcccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        447 -DLPNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       447 -~~~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                       ...+.+|++ ++.++|++||++++++|++
T Consensus       347 ~~~~~~iRis-~~~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       347 TFATGTIRLS-LGYFNTEEEIEKLLEALSE  375 (376)
T ss_pred             CCCCCeEEEe-cCCCCCHHHHHHHHHHHhh
Confidence             014689999 8899999999999999976

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=100.00  E-value=1.9e-31  Score=268.48  Aligned_cols=397  Identities=18%  Similarity=0.174  Sum_probs=263.2

Q ss_pred             CHHHHHHhcCCCCCCCCCCHHHHHHHHHhhccCCccCCCCCccccccC-CCChHHhHHHHHHHHcCcCCcch---hcChh
Q psy12303         34 HPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSC-GLDVVSMAGEWLIATANTNMFTY---EIAPV  109 (480)
Q Consensus        34 ~p~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~---~~~~~  109 (480)
                      -|++++...+..+|+  .+..++++.++++...+....+ .|++...+ ...++.+...++......+...|   ..+.+
T Consensus        34 ip~~~~~~~~~~~~~--~se~~~~~~~~~l~~~n~~~~~-~~~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG  110 (481)
T PRK04366         34 LPEELLRKEPPELPE--VSELEVVRHYTRLSQKNYGVDT-GFYPLGSCTMKYNPKINEKVARLPGFAELHPLQPEETVQG  110 (481)
T ss_pred             CCHHHhcCCCCCCCC--CCHHHHHHHHHHHHhcCCCCCc-ceecCcccCCCCCHHHHHHHHhCcchhcCCCCCChhhhhH
Confidence            345565444566775  8899999999988776654333 56666633 34455555455444111233445   36677


Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        110 FILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      ..++..++.+++++++|.+. ..++.++|+.+...++.+++...    ...|..  + +.+|+++...|+++...+...|
T Consensus       111 ~lel~~~~~~~la~l~G~~~-~~l~~~~GA~a~~~~l~~~r~~~----~~~Gd~--~-~~~Vlv~~~~hp~~~~~~~~~G  182 (481)
T PRK04366        111 ALELMYELQEWLKEITGMDA-VTLQPAAGAHGELTGLLMIRAYH----EARGDT--K-RTEVIVPDSAHGTNPASAAMAG  182 (481)
T ss_pred             HHHHHHHHHHHHHHHhCCCc-eEEEeCcHHHHHHHHHHHHHHHh----hccCcC--C-CCEEEEcCCccHhHHHHHHHcC
Confidence            88899999999999999974 34444566666666555443211    111210  1 2379999999999999999888


Q ss_pred             CCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccc-cChHHHHHHHHHcCcEEEeecccccccc
Q psy12303        190 LGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAF-DPIEEIADICQKYNMWLHVDAAWGGGLL  268 (480)
Q Consensus       190 ~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~-~~l~~I~~i~~~~~~~l~vD~a~~~~~~  268 (480)
                      +   +++.+|++++|.+|+++|+++++++      +++|++++++ ++|.+ +|+++|+++|+++|+|+|||+|+..+.+
T Consensus       183 ~---~vv~v~~~~~~~~D~e~L~~~i~~~------t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~  252 (481)
T PRK04366        183 F---KVVEIPSNEDGLVDLEALKAAVGED------TAALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAIL  252 (481)
T ss_pred             C---EEEEeecCCCCCcCHHHHHhhcccC------CeEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhhc
Confidence            8   8899999888999999999999765      8899999986 89988 5899999999999999999999976533


Q ss_pred             -ccccccCcccCCCCCCccceeCccccCCCcccc-----eEEEEeCchhhHhhhcCCcccccccccccCcccCC-CCccc
Q psy12303        269 -LSKKYRHPRLTGIERADSVTWNPHKLMGTLLQC-----STIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDT-GDKVI  341 (480)
Q Consensus       269 -~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~-----g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~  341 (480)
                       ..+...+       ++|++++++|||+++|.++     |+++++++ .....    ++.+...+.. ...+.. ....+
T Consensus       253 g~~~~~~~-------GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~-~~~~l----p~~~v~~~g~-~~~l~~~r~~~i  319 (481)
T PRK04366        253 GKARPGDM-------GFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEE-LAPFL----PVPVVEKDGD-RYRLDYDRPKSI  319 (481)
T ss_pred             ccCCcccc-------CCCEEEEechhhcCCCCCCCCCCeeeeeehhh-hHhhC----CCCeeeccCC-ceeecccccccC
Confidence             1222233       8999999999999988655     57777654 33322    1111110000 001111 11111


Q ss_pred             cCCCC-----CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhh
Q psy12303        342 QCGRH-----NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEK  416 (480)
Q Consensus       342 ~~~r~-----~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~  416 (480)
                      .-.+.     ..++++|..+..+|.+|+++..++...++++|++.|++ +..+.. ..+....++|.+..-...+.    
T Consensus       320 ~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~-~~~~~~-~~~~~~~~~~~~~~~~~~g~----  393 (481)
T PRK04366        320 GRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKD-IYDLPY-DRPCMHEFVLSGKKLKETGV----  393 (481)
T ss_pred             CCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hCcccC-CCCeeEEEEEECccccccCC----
Confidence            11111     23578888899999999999999999999999999999 533321 22333334443210011111    


Q ss_pred             HHHHhhhhhHHHHHHHHhcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        417 RLNILGEITPILKGRMMQAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       417 ~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                             ...++.++|.+.|+..... .... ..+.+|++ ++..+|++|||++++.|+++.++
T Consensus       394 -------~~~~v~~~L~~~Gi~~~~~-~~p~~~~~~l~is-~~e~~t~edid~l~~~l~~i~~~  448 (481)
T PRK04366        394 -------RTLDIAKRLLDYGFHPPTI-YFPLIVPEALMIE-PTETESKETLDAFIAAMKQIAEE  448 (481)
T ss_pred             -------CHHHHHHHHHHCCccCCcc-ccccccCCeEEEc-ccCCCCHHHHHHHHHHHHHHHHH
Confidence                   1356788888888543211 1111 14689999 88999999999999999988654

>PLN02651 cysteine desulfurase

Probab=100.00  E-value=1.3e-31  Score=262.57  Aligned_cols=336  Identities=14%  Similarity=0.087  Sum_probs=235.4

Q ss_pred             CccccccCCCChHHhHHHHHHHHcC--cCCc--chhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHH
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIATAN--TNMF--TYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAA  149 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~--~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~  149 (480)
                      .|+++..+++.+..++..+.....+  .+..  .+..++...++.+++++.+++++|.++.+++||+|+|+|+..++..+
T Consensus         1 iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~   80 (364)
T PLN02651          1 LYLDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGV   80 (364)
T ss_pred             CcccCcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHH
Confidence            3888888888777776544333221  1111  12223445667778899999999998888999999999999999877


Q ss_pred             HHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEE
Q psy12303        150 RHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVN  229 (480)
Q Consensus       150 ~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~  229 (480)
                      .....          .+|+ .|+++..+|+++...+..+.....+++.+|+++++.+|+++|+++++++      +++|+
T Consensus        81 ~~~~~----------~~g~-~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~------t~lv~  143 (364)
T PLN02651         81 MHFYK----------DKKK-HVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRPD------TALVS  143 (364)
T ss_pred             HHhcc----------CCCC-EEEEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCC------cEEEE
Confidence            54211          1335 7889999999987776554222228889999888999999999999765      88999


Q ss_pred             eccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCc
Q psy12303        230 CTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQD  309 (480)
Q Consensus       230 ~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~  309 (480)
                      +++++|++|.+.|+++|.++|+++|+++|||++|+.+.++.+..++       ++|++++++||| ++|.|+|+++++++
T Consensus       144 v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~-------~~D~~~~s~hK~-~gp~G~g~l~v~~~  215 (364)
T PLN02651        144 VMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDVDDL-------GVDLMSISGHKI-YGPKGVGALYVRRR  215 (364)
T ss_pred             EECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccCcccC-------CCCEEEechhhh-CCCCceEEEEEcCC
Confidence            9999999999999999999999999999999999999888877666       899999999998 67999999999875


Q ss_pred             hhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCe
Q psy12303        310 GLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKF  389 (480)
Q Consensus       310 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~  389 (480)
                      ... ..   .+. ..+...  ...+..|+..+     ...+++..++..+.. +.++..++..++++++.+.|++..+++
T Consensus       216 ~~~-~l---~p~-~~g~~~--~~~~~~GT~~~-----~~~~~l~~al~~~~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~  282 (364)
T PLN02651        216 PRV-RL---EPL-MSGGGQ--ERGRRSGTENT-----PLVVGLGAACELAMK-EMDYDEKHMKALRERLLNGLRAKLGGV  282 (364)
T ss_pred             CCC-CC---Ccc-ccCCCc--cCCccCCCccH-----HHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence            321 11   111 111111  01111221111     234556666666543 458888999999999999998525799


Q ss_pred             EEecC--Cc---eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeee--------------CC---
Q psy12303        390 YLILE--PE---MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPL--------------ND---  447 (480)
Q Consensus       390 ~~~~~--~~---~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~--------------~~---  447 (480)
                      +++++  +.   .+++.|.+.  ...              ..++.++|.+   +.+..+..              -+   
T Consensus       283 ~i~~~~~~~~~~~~i~~~~~~--~~~--------------~~~~~~~L~~---i~v~~g~~c~~~~~~~~~~~~~~g~~~  343 (364)
T PLN02651        283 RVNGPRDPEKRYPGTLNLSFA--YVE--------------GESLLMGLKE---VAVSSGSACTSASLEPSYVLRALGVPE  343 (364)
T ss_pred             EEECCCCcccCcCCEEEEEeC--CCC--------------HHHHHHHhCC---EEEEchhhcCCCCCCcCHHHHHcCCCh
Confidence            99874  22   246666542  211              1345555533   33322110              01   


Q ss_pred             --cccEEEEecccCCCCHHHHH
Q psy12303        448 --LPNFFRNIISSAAVTEGDID  467 (480)
Q Consensus       448 --~~~~~R~~~~~~~~t~~di~  467 (480)
                        ..+.+|+| ++++||++|||
T Consensus       344 ~~~~~~vR~S-~~~~~t~~did  364 (364)
T PLN02651        344 EMAHGSLRLG-VGRFTTEEEVD  364 (364)
T ss_pred             HHhCceEEEE-cCCCCCHHHcC
Confidence              13689999 89999999986

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=100.00  E-value=2.1e-31  Score=266.48  Aligned_cols=356  Identities=14%  Similarity=0.058  Sum_probs=244.7

Q ss_pred             CCCccccccCCCChHHhHHHHHHHH--cCcCCc--chhcChhhHHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHH
Q psy12303         72 HPMFMNQLSCGLDVVSMAGEWLIAT--ANTNMF--TYEIAPVFILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAF  146 (480)
Q Consensus        72 ~p~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~--~~~~~~~~~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al  146 (480)
                      ...|+++..+++.+..++..+....  .+.+..  .+..+....+..+++++.+++++|.+ +.++++|+|+|+++..++
T Consensus        32 ~~iyLd~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~  111 (424)
T PLN02855         32 KLVYLDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLVA  111 (424)
T ss_pred             CeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHH
Confidence            3579999888877777764433322  111211  11222333455567899999999995 478999999999988887


Q ss_pred             HHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHH----HHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCC
Q psy12303        147 LAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS----CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKG  222 (480)
Q Consensus       147 ~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~----~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~  222 (480)
                      .......          ..||+ .|+++..+|++...    .++..|+   +++.+|++.++.+|++++++.++++    
T Consensus       112 ~~~~~~~----------~~~gd-~vl~~~~~~~s~~~~~~~~a~~~g~---~v~~v~~~~~~~~~~~~l~~~i~~~----  173 (424)
T PLN02855        112 YTWGLAN----------LKPGD-EVILSVAEHHSNIVPWQLVAQKTGA---VLKFVGLTPDEVLDVEQLKELLSEK----  173 (424)
T ss_pred             HHhhhhc----------CCCcC-EEEECCCccHHHHHHHHHHHHHcCC---EEEEEecCCCCCcCHHHHHHHhccC----
Confidence            6531100          01445 78899899987543    4455566   8889999877889999999999764    


Q ss_pred             CccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccce
Q psy12303        223 DIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCS  302 (480)
Q Consensus       223 ~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g  302 (480)
                        |++|++++++|++|.+.|+++|.++|+++|+++++|++|+.+..+.+...+       ++|++++|+||+ ++|.|+|
T Consensus       174 --t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~-------~~d~~~~s~~K~-~gp~G~G  243 (424)
T PLN02855        174 --TKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTL-------GADFLVASSHKM-CGPTGIG  243 (424)
T ss_pred             --ceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhc-------CCCEEEeecccc-cCCCccE
Confidence              899999999999999999999999999999999999999887665554444       789999999995 5588999


Q ss_pred             EEEEeCchhhHhhhcCCcccccccccc---cCcccCC--CCccccCCCC--CCchHHHHHHHHhcHHHHHHHHHHHHHHH
Q psy12303        303 TIHFKQDGLLISCNQMSAEYLFMQDKL---YDVRYDT--GDKVIQCGRH--NDIFKLWLQWRAKGDEGFEKQIDRLMELA  375 (480)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~--~~~~~~~~r~--~~~l~~~~~l~~~g~~~~~~~~~~~~~l~  375 (480)
                      ++++++. .+...    .+++.+....   +.....+  ....++.|.+  ...+++..+++.+...|++++.++..+++
T Consensus       244 ~l~~~~~-~~~~~----~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~  318 (424)
T PLN02855        244 FLWGKSD-LLESM----PPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELG  318 (424)
T ss_pred             EEEEchh-hhhcC----CCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            9998754 33322    2222221110   0000000  0001112211  13456666677666668888999999999


Q ss_pred             HHHHHHHhcCCCCeEEecCC------ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeee---
Q psy12303        376 EYMVKKIKSMPDKFYLILEP------EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPL---  445 (480)
Q Consensus       376 ~~l~~~l~~~~~g~~~~~~~------~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~---  445 (480)
                      +++.+.|++ +++++++++.      ..++++|...  ...              ..++.+.|.++ | +.+..+..   
T Consensus       319 ~~l~~~L~~-~~g~~i~~~~~~~~~~r~~~v~~~~~--~~~--------------~~~v~~~L~~~~g-I~v~~g~~c~~  380 (424)
T PLN02855        319 TYLYEKLSS-VPGVRIYGPKPSEGVGRAALCAFNVE--GIH--------------PTDLSTFLDQQHG-VAIRSGHHCAQ  380 (424)
T ss_pred             HHHHHHHhc-CCCEEEeCCCcccccCcccEEEEEEC--CcC--------------HHHHHHHhcccCC-EEEechhhhhH
Confidence            999999999 8999998642      2356666542  111              23566777776 6 43332110   


Q ss_pred             -----CCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        446 -----NDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       446 -----~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                           .+..+++|+| +++++|++||+++++.|+++++.
T Consensus       381 ~~~~~~g~~~~iRiS-~~~ynt~~di~~l~~~l~~~~~~  418 (424)
T PLN02855        381 PLHRYLGVNASARAS-LYFYNTKEEVDAFIHALKDTIAF  418 (424)
T ss_pred             HHHHHhCCCCeEEEE-eccCCCHHHHHHHHHHHHHHHHH
Confidence                 1223689999 99999999999999999988754

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=100.00  E-value=1.4e-30  Score=270.68  Aligned_cols=381  Identities=16%  Similarity=0.150  Sum_probs=269.6

Q ss_pred             CHHHHHHHHHhhccCCccCCCCCccccccCCCChHHhHHHHHH---HHcCcCCcchh-cChhhHHHHHHHHHHHHHHhCC
Q psy12303         52 PLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLI---ATANTNMFTYE-IAPVFILMETVVLEKMRQIIGW  127 (480)
Q Consensus        52 ~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~-~~~~~~~~e~~~~~~la~~~g~  127 (480)
                      +.-++++.++++-..+....+ .|++...+....++.......   .+.+-.++..+ .+.+..+++.++.+|+++++|+
T Consensus       467 sE~e~~r~~~~L~~kn~~~~~-~fi~lGsctmk~na~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~elq~~l~eltGm  545 (939)
T TIGR00461       467 SETEMLRYLHRLESKDLALNN-SMIPLGSCTMKLNATAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCSITGF  545 (939)
T ss_pred             CHHHHHHHHHHHHhcCCCccc-cCCCCccCCCccCHHHHHHHhcchhhcCcCCCCchHHhHHHHHHHHHHHHHHHHHHCC
Confidence            788999999888776655444 566666666666665544422   23333333333 5677899999999999999999


Q ss_pred             CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCC
Q psy12303        128 QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLI  207 (480)
Q Consensus       128 ~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d  207 (480)
                      +. ..+..++|+.|+..+++++|...    ..+|..   ++.+|++|...|.+....+...|+   +++.||++++|.+|
T Consensus       546 d~-~Sl~p~aGA~gE~agL~aiR~y~----~~rge~---~R~~vlip~saHgtnPasa~~~G~---~Vv~V~~d~~G~iD  614 (939)
T TIGR00461       546 DA-ISLQPNSGAQGEYAGLRVIRSYH----ESRGEN---HRNICLIPVSAHGTNPASAAMAGM---QVVPVNCDQDGNID  614 (939)
T ss_pred             CC-cccCCchHHHHHHHHHHHHHHHH----HhcCCC---CCCEEEEEccccCcCHHHHHHCCC---EEEEeccCCCCCcC
Confidence            95 56777788888888998887642    222321   244899999999999999999998   89999999999999


Q ss_pred             HHHHHHHHHHHHHCCCccEEEEeccCCCccccccC-hHHHHHHHHHcCcEEEeecccccccc-ccccccCcccCCCCCCc
Q psy12303        208 PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP-IEEIADICQKYNMWLHVDAAWGGGLL-LSKKYRHPRLTGIERAD  285 (480)
Q Consensus       208 ~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~-l~~I~~i~~~~~~~l~vD~a~~~~~~-~~~~~~~~~~~~~~~~D  285 (480)
                      +++|++++++   .+.++++|++++++| +|.++| +++|+++|+++|.++++|+|+..+.. ..+....       ++|
T Consensus       615 le~L~~~i~~---~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~-------GaD  683 (939)
T TIGR00461       615 LVDLKNKAEQ---HGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDL-------GAD  683 (939)
T ss_pred             HHHHHHHHhh---cCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCcccc-------CCC
Confidence            9999999986   233499999999988 799977 99999999999999999999976443 2222334       899


Q ss_pred             cceeCccccCCCccc-----ceEEEEeCchhhHhhhcCCccccccccc-ccCcccCCCCccccCCCCCC----chHHHHH
Q psy12303        286 SVTWNPHKLMGTLLQ-----CSTIHFKQDGLLISCNQMSAEYLFMQDK-LYDVRYDTGDKVIQCGRHND----IFKLWLQ  355 (480)
Q Consensus       286 ~~~~s~hK~~~~p~~-----~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~----~l~~~~~  355 (480)
                      ++++|.||++++|.|     .|++++++. +.. .   .+.-...... ..+..-+++   ...++.+.    ++++|+.
T Consensus       684 i~~~s~HKtf~~P~G~GGPg~G~i~vr~~-L~~-~---lPg~~v~~t~d~~greq~Ig---a~s~~~~g~a~~~l~a~~y  755 (939)
T TIGR00461       684 VCHLNLHKTFCIPHGGGGPGMGPIGVKSH-LIP-F---LPKHDVVSMITGIGGSKSIG---SVSAAPYGSASILPISWMY  755 (939)
T ss_pred             EEEecCCccCCCCCCCCCCCeEEEEEhhh-chh-h---cCCCcccccccCCCCccccc---cccccccCcHHHHHHHHHH
Confidence            999999999995554     599998853 221 1   1111111100 000001111   11222333    4899999


Q ss_pred             HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC----CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHH
Q psy12303        356 WRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE----PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGR  431 (480)
Q Consensus       356 l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~----~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~  431 (480)
                      ++.+|.+|+++..+....+++|+.+.|.+ .  ++++.+    +....+++++.+..          +..+..+.++.++
T Consensus       756 i~~lG~~GL~~~a~~ailnAnYl~~rL~~-~--~~~l~~~~~~~~~hEfv~~~~~~~----------~~~g~~~~dIakr  822 (939)
T TIGR00461       756 IKMMGNEGLPKASVVAILNANYMATRLKD-H--YPILFVGTLKHVAHECILDLRPLK----------AKTGIEAIDVAKR  822 (939)
T ss_pred             HHHHCHHHHHHHHHHHHHHHHHHHHHhhc-c--CcccccCCCCceeEEEEEeccchh----------hhcCCCHHHHHHH
Confidence            99999999999999999999999999988 3  455443    33455777765321          0011124678999


Q ss_pred             HHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        432 MMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       432 l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      |.+.|......+ +.. .+.+-++ +...++++|||++++++.++.++
T Consensus       823 L~d~G~hapt~~-~pv-~g~lmie-pTE~eskeelD~f~~al~~I~~e  867 (939)
T TIGR00461       823 LQDYGFHAPTLS-FPV-PGTLMVE-PTESESLEELDRFCDAMIAIKEE  867 (939)
T ss_pred             HHhCCeeccccC-Ccc-CCeEEEE-eeccCCHHHHHHHHHHHHHHHHH
Confidence            999996544432 222 2355555 55789999999999999887654

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=100.00  E-value=3.5e-31  Score=260.48  Aligned_cols=346  Identities=18%  Similarity=0.162  Sum_probs=247.8

Q ss_pred             ccccccCCCChHHhHHHHHHHH----cCcCCcchhcChhhHHHHHHHHHHHHHHhCCCC-CCeEECCChhHHHHHHHHHH
Q psy12303         75 FMNQLSCGLDVVSMAGEWLIAT----ANTNMFTYEIAPVFILMETVVLEKMRQIIGWQG-GDSILAPGGSISNLYAFLAA  149 (480)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~-~~~~~t~ggt~a~~~al~~~  149 (480)
                      |+++..+++.|..++..+....    .++....+..+....++-+++++.+++++|+++ .+++|++|+|+++..++..+
T Consensus         2 Yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l   81 (371)
T PF00266_consen    2 YLDNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSL   81 (371)
T ss_dssp             EEBTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHH
T ss_pred             EeeCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhcc
Confidence            7888888888888876544432    222223344455567777889999999999988 88999999999999999888


Q ss_pred             HHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHH----HcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCcc
Q psy12303        150 RHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAA----VCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIP  225 (480)
Q Consensus       150 ~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~----~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~  225 (480)
                      ....           .+|+ .|+++..+|++...++.    ..|+   +++.+|.+.++.+|+++++++|+++      +
T Consensus        82 ~~~~-----------~~g~-~vl~~~~~~~s~~~~~~~~~~~~g~---~v~~i~~~~~~~~~~~~~~~~l~~~------~  140 (371)
T PF00266_consen   82 LNPL-----------KPGD-EVLVTSNEHPSNRYPWEEIAKRKGA---EVRVIPADPGGSLDLEDLEEALNPD------T  140 (371)
T ss_dssp             HHHG-----------TTTC-EEEEEESSHHHHHHHHHHHHHHTTE---EEEEEEEGTTSSCSHHHHHHHHHTT------E
T ss_pred             cccc-----------cccc-ccccccccccccccccccccccchh---hhccccccccchhhhhhhhhhhccc------c
Confidence            5421           1335 78888899999884444    4455   8889999888999999999999765      9


Q ss_pred             EEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEE
Q psy12303        226 FFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIH  305 (480)
Q Consensus       226 ~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~  305 (480)
                      ++|++++.+|.+|.+.|+++|.++|+++|+++++|++++.+..+.+...+       ++|++++|+|| +++|.|+|+++
T Consensus       141 ~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~-------~~D~~~~s~~K-l~gp~G~g~l~  212 (371)
T PF00266_consen  141 RLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDEL-------GADFLVFSSHK-LGGPPGLGFLY  212 (371)
T ss_dssp             SEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTT-------TESEEEEESTS-TTSSSTEEEEE
T ss_pred             ceEEeecccccccEEeeeceehhhhhccCCceeEechhcccccccccccc-------ccceeeecccc-cCCCCchhhhe
Confidence            99999999999999999999999999999999999999999998887777       89999999999 88899999999


Q ss_pred             EeCchhhHhhhcCCcccccccccc-cCcccCCCCccccCCCC-C-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q psy12303        306 FKQDGLLISCNQMSAEYLFMQDKL-YDVRYDTGDKVIQCGRH-N-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKI  382 (480)
Q Consensus       306 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~r~-~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l  382 (480)
                      ++++. .....+...++....... ....+....+.+..|.. . ..+++..+++.+...|++++.++..++++++.+.|
T Consensus       213 v~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l  291 (371)
T PF00266_consen  213 VRPEA-IERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREAL  291 (371)
T ss_dssp             EEHHH-HHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ehhhh-hhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhh
Confidence            98753 344432222221110000 00000111111222222 1 34556667777777889999999999999999999


Q ss_pred             hcCCCCeEEecC----CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCC--------ccc
Q psy12303        383 KSMPDKFYLILE----PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLND--------LPN  450 (480)
Q Consensus       383 ~~~~~g~~~~~~----~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~--------~~~  450 (480)
                      .+ ++++.++++    ...++++|.+....                ...+.+.|.++| +.+..+....        ..+
T Consensus       292 ~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------~~~~~~~L~~~~-I~~~~G~~~~~~~~~~~~~~~  353 (371)
T PF00266_consen  292 EE-LPGIEVLGPDDEPRRPSIVSFNLPGSD----------------ADDVVKYLEERG-IAVSTGSACAGPSLDILGMGG  353 (371)
T ss_dssp             HH-TTTEEESSSSCGGBGTTEEEEEETTSS----------------HHHHHHHHHHHT-EEEEESTTTCHHHHHHHHTTT
T ss_pred             hc-CCceeEeeecccccccceEEEeecCCC----------------HHHHHHHHhhcC-EEEeccCcccHHHHHHhCCCC
Confidence            99 999998762    23567777652211                246778888886 4444321111        137


Q ss_pred             EEEEecccCCCCHHHHHHH
Q psy12303        451 FFRNIISSAAVTEGDIDFL  469 (480)
Q Consensus       451 ~~R~~~~~~~~t~~di~~~  469 (480)
                      ++|+| +++++|++|||+|
T Consensus       354 ~iRvS-~~~~nt~~dv~~l  371 (371)
T PF00266_consen  354 VIRVS-LHYYNTEEDVDRL  371 (371)
T ss_dssp             EEEEE--GTTSSHHHHHHH
T ss_pred             EEEEe-ccCCCCHHHHhhC
Confidence            99999 9999999999986

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>TIGR02006 IscS cysteine desulfurase IscS

Probab=100.00  E-value=1e-30  Score=259.55  Aligned_cols=345  Identities=18%  Similarity=0.212  Sum_probs=235.4

Q ss_pred             CCccccccCCCChHHhHHHHHHHHc--CcCCc--chhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHH
Q psy12303         73 PMFMNQLSCGLDVVSMAGEWLIATA--NTNMF--TYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLA  148 (480)
Q Consensus        73 p~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~--~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~  148 (480)
                      +.|+++..+++.++.++..+.....  ..+..  .+..+....+..+++++.+++++|.++++++|++|+|+++..++.+
T Consensus         4 ~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~   83 (402)
T TIGR02006         4 PIYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNLAIKG   83 (402)
T ss_pred             cEEeeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHH
Confidence            4799998888877777643333221  11221  1111222345566788999999999888899999999999998877


Q ss_pred             HHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHc---CCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCcc
Q psy12303        149 ARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVC---GLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIP  225 (480)
Q Consensus       149 ~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~---g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~  225 (480)
                      +.....          .+|+ +|+++..+|+++..++..+   |+   +++.+|+++++.+|+++|+++++++      +
T Consensus        84 l~~~~~----------~~g~-~Vi~~~~~h~s~~~~~~~~~~~g~---~v~~v~~~~~~~~d~~~l~~~l~~~------~  143 (402)
T TIGR02006        84 IAHFYK----------SKGN-HIITSKTEHKAVLDTCRYLEREGF---EVTYLPPKSNGLIDLEELKAAIRDD------T  143 (402)
T ss_pred             HHHhhc----------CCCC-EEEECCCccHHHHHHHHHHHhcCC---EEEEEccCCCCcCCHHHHHHhcCCC------C
Confidence            653100          1334 8889999999988776554   54   8899999888999999999998764      8


Q ss_pred             EEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEE
Q psy12303        226 FFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIH  305 (480)
Q Consensus       226 ~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~  305 (480)
                      ++|++++++|++|.+.|+++|.++|+++|+++|+|++++.+..+.+....       ++|++++|+||+++ |.|+|+++
T Consensus       144 ~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~-------~~D~~~~s~~K~~g-p~G~G~l~  215 (402)
T TIGR02006       144 ILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNEL-------KVDLMSISGHKIYG-PKGIGALY  215 (402)
T ss_pred             EEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCcccc-------CCCEEEEehhhhcC-CCceEEEE
Confidence            89999999999999999999999999999999999999998877665445       89999999999764 89999999


Q ss_pred             EeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12303        306 FKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM  385 (480)
Q Consensus       306 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~  385 (480)
                      +++..... .   . +...+....  ..++.++..+     ...+++..+++.+ .+++++..++..++++++.+.|++ 
T Consensus       216 ~~~~~~~~-~---~-~~~~g~~~~--~~~~~gt~~~-----~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~-  281 (402)
T TIGR02006       216 VRRKPRVR-L---E-ALIHGGGHE--RGMRSGTLPT-----HQIVGMGEAFRIA-KEEMAQDTAHVLALRDRLLNGIKS-  281 (402)
T ss_pred             EccCCCCC-C---C-ceecCCCcc--CCccCCCccH-----HHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhc-
Confidence            98653321 1   1 111111100  0111111111     1233444555544 356788889999999999999999 


Q ss_pred             CCCeEEecCCc-----eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHH----HhcccEEEeeee-----------e
Q psy12303        386 PDKFYLILEPE-----MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRM----MQAGTMMVGYQP-----------L  445 (480)
Q Consensus       386 ~~g~~~~~~~~-----~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l----~~~g~~~~~~~~-----------~  445 (480)
                      ++++++++++.     ...++|...+       .           ..+...+    ...|..+ ....           .
T Consensus       282 ~~~v~~~~~~~~~~p~~~~v~f~~~~-------~-----------~~~~~~l~~i~v~~G~~c-~~~~~~~~~~l~~lg~  342 (402)
T TIGR02006       282 IEEVYLNGDLEHRVPGNLNVSFNYVE-------G-----------ESLIMALKDLAVSSGSAC-TSASLEPSYVLRALGI  342 (402)
T ss_pred             CCCEEEeCCccccCCCeEEEEEeCcC-------H-----------HHHHHhcCCEEEechhhc-CCCCCCccHHHHHcCC
Confidence            89998875422     1234443211       0           1122222    1223221 1100           0


Q ss_pred             C--CcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        446 N--DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       446 ~--~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .  ...+++|+| +++++|++|||++++.|+++.+.
T Consensus       343 ~~~~~~~~vR~S-~~~~~t~edid~l~~~l~~~~~~  377 (402)
T TIGR02006       343 NDELAHSSIRFT-IGRFTTEEEIDYAVKLVKSAIDK  377 (402)
T ss_pred             ChhhcCceEEEE-ecCCCCHHHHHHHHHHHHHHHHH
Confidence            0  003689999 88999999999999999987653

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=100.00  E-value=3.9e-30  Score=254.12  Aligned_cols=346  Identities=14%  Similarity=0.146  Sum_probs=232.4

Q ss_pred             ccccccCCCChHHhHHHHHHHH-----cCcCCcchhcChhhHHHHHHHHHHHHHHhCC-CCCCeEECCChhHHHHHHHHH
Q psy12303         75 FMNQLSCGLDVVSMAGEWLIAT-----ANTNMFTYEIAPVFILMETVVLEKMRQIIGW-QGGDSILAPGGSISNLYAFLA  148 (480)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~-~~~~~~~t~ggt~a~~~al~~  148 (480)
                      ||++..+++.++.++. .+..+     .|+........+....+++ .++.+.+.+|. +++++++|+|+|+++..++.+
T Consensus         2 yld~aa~~~~~~~v~~-~~~~~~~~~~~n~~~~~~~~~~~~~~l~~-a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~   79 (382)
T TIGR03403         2 YLDNNATTMLDPKVKE-LMDPFFCDIYGNPNSLHQFGTATHPAIAE-ALDKLYKGINARDLDDIIITSCATESNNWVLKG   79 (382)
T ss_pred             cccCcCCCCCCHHHHH-HHHHHHHhcCcCCccccHHHHHHHHHHHH-HHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHH
Confidence            7888888877776664 33332     2332211111223334444 45556667777 567899999999999998887


Q ss_pred             HHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEE
Q psy12303        149 ARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFV  228 (480)
Q Consensus       149 ~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v  228 (480)
                      +....+   .      .+++..|+++..+|+++...+..+...+.+++.+|+++++.+|+++|++++++.      +++|
T Consensus        80 ~~~~~~---~------~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~~~------t~lv  144 (382)
T TIGR03403        80 VYFDEI---L------KGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAITEK------TALV  144 (382)
T ss_pred             HHHhhc---c------cCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhcccC------CeEE
Confidence            632100   0      022337999999999988776543211228899999988999999999998765      7899


Q ss_pred             EeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeC
Q psy12303        229 NCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQ  308 (480)
Q Consensus       229 ~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~  308 (480)
                      ++++++|++|.+.|+++|.++|+++|+++|+|++++.+..+.+...+       ++|++++|+|||+ +|.|+|++++++
T Consensus       145 ~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~-------~~D~~~~s~~K~~-gp~G~g~l~vr~  216 (382)
T TIGR03403       145 SVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKA-------GVDFLSFSAHKFH-GPKGVGGLYIRK  216 (382)
T ss_pred             EEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCcccc-------CCCEEEEcchhhC-CCCceEEEEECC
Confidence            99999999999999999999999999999999999988776665555       8999999999985 589999999987


Q ss_pred             chhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy12303        309 DGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDK  388 (480)
Q Consensus       309 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g  388 (480)
                      ...+      . +.+.+....  ..+..++.++     ...+++..+++.. .+.++...++..++++++.+.|++ +++
T Consensus       217 ~~~~------~-p~~~g~~~~--~~~~~gt~~~-----~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~-~~~  280 (382)
T TIGR03403       217 GVEL------T-PLFHGGEHM--GGRRSGTLNV-----PYIVAMGEAMRLA-NEYLDFEKSHVRRLRDRLEDALLE-LPD  280 (382)
T ss_pred             CCCC------C-CcccCCCCC--CCcccCCcCh-----HHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence            5311      1 122111100  0011111110     1222444455433 345777788999999999999999 899


Q ss_pred             eEEecCC--c-eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeee--------------CC----
Q psy12303        389 FYLILEP--E-MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPL--------------ND----  447 (480)
Q Consensus       389 ~~~~~~~--~-~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~--------------~~----  447 (480)
                      ++++.++  . .+++.|...  ...              ...+...|.++|+. +..+..              -+    
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~--~~~--------------~~~~~~~L~~~gI~-v~~g~~c~~~~~~~~~v~~~~g~~~~  343 (382)
T TIGR03403       281 VFVVGDREHRVPNTILISIK--GVE--------------GEAMLWDLNKAGIA-ASTGSACASEDLEANPVMVAIGADKE  343 (382)
T ss_pred             EEEECCCCCCcCCEEEEEeC--CCC--------------HHHHHHhhccCCEE-EEchhccCCCCCCcCHHHHHcCCChH
Confidence            9998643  2 234444321  111              23455566677643 332100              00    


Q ss_pred             -cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        448 -LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       448 -~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                       ..+.+|+| .++++|++|||++++.|++++++
T Consensus       344 ~~~~~iR~s-~~~~~t~~did~~~~~l~~~~~~  375 (382)
T TIGR03403       344 LAHTAIRLS-LSRFTTEEEIDYTIEVFKKAVQR  375 (382)
T ss_pred             HhCeeEEEE-CCCCCCHHHHHHHHHHHHHHHHH
Confidence             03689999 88999999999999999987754

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=100.00  E-value=3.6e-30  Score=259.30  Aligned_cols=409  Identities=16%  Similarity=0.165  Sum_probs=264.0

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCcccCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHhhccCCc-cCCCCCccccccCCC
Q psy12303          5 ETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQV-RTGHPMFMNQLSCGL   83 (480)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~-~~~~p~~~~~~~~~~   83 (480)
                      ....++|++.+-  .+++.+   ..  ..-|.+++...+.++|+++ +.+++++.+.++..... ...++++++....+.
T Consensus         9 ~~~~~~~~~~~~--~~~~~~---~~--~~~p~~~~~~~~~~lp~~~-~~~~v~~~~~~~~~~~~~~~~~~~~lg~g~~~~   80 (447)
T PRK00451          9 EEDIREMLDAIG--VKSIDE---LF--ADIPEELRLKRPLDLPPGL-SEMELLRHLRELAAKNKTAEEYPSFLGAGAYDH   80 (447)
T ss_pred             HHHHHHHHHHhC--CCCHHH---HH--HhCCHHHHhCCCCCCCCCC-CHHHHHHHHHHHHhcCCCcCcCcccCcccccCC
Confidence            455666666553  122222   11  2357888888888899865 99999999988764333 234677776543333


Q ss_pred             ChHHhHHHHHH--HHcCc-CCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhc
Q psy12303         84 DVVSMAGEWLI--ATANT-NMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEK  160 (480)
Q Consensus        84 ~~~~~~~~~l~--~~~~~-~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~  160 (480)
                      ..+....+.+.  ..... +....+.+++..+...+..+++++++|++..++++|+|||+++..++.+.+..        
T Consensus        81 ~~p~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~--------  152 (447)
T PRK00451         81 YIPAVVDHIISRSEFYTAYTPYQPEISQGTLQAIFEYQTMICELTGMDVANASMYDGATALAEAALMAVRIT--------  152 (447)
T ss_pred             cCcHHHHHHHhchhHHHhcCCCCCccchHHHHHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhc--------
Confidence            33333333321  11111 11111235556677777788999999998888999999998777666554322        


Q ss_pred             CCCccCCceEEEecCCCchhHHHHHHHc----CCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCc
Q psy12303        161 GLSAIKGQLVMFTSDQCHYSVRSCAAVC----GLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTV  236 (480)
Q Consensus       161 g~~~~~g~~~vl~~~~~h~s~~~~~~~~----g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~  236 (480)
                           +|+ .|++++.+|+++.+++..+    |.   +++.+|++++ .+|+++|+++++++      +++|+++++ |+
T Consensus       153 -----~g~-~Vlv~~~~~~~~~~~~~~~~~~~G~---~~~~v~~~~~-~~d~~~l~~~i~~~------t~~v~l~~p-n~  215 (447)
T PRK00451        153 -----KRK-KVLVSGAVHPEYREVLKTYLKGQGI---EVVEVPYEDG-VTDLEALEAAVDDD------TAAVVVQYP-NF  215 (447)
T ss_pred             -----CCC-EEEEeCccCHHHHHHHHHHHHhCCc---EEEEecCCCC-CCCHHHHHHhcCCC------eEEEEEECC-CC
Confidence                 334 7889999999999888763    55   8899999887 99999999999765      899999998 88


Q ss_pred             cccccChHHHHHHHHHcCcEEEe--eccccccccccccccCcccCCCCCCccceeCcccc-----CCCcccceEEEEeCc
Q psy12303        237 LGAFDPIEEIADICQKYNMWLHV--DAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKL-----MGTLLQCSTIHFKQD  309 (480)
Q Consensus       237 ~G~~~~l~~I~~i~~~~~~~l~v--D~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~-----~~~p~~~g~~~~~~~  309 (480)
                      +|.++|+++|.++|+++|+|+++  |.+. .+.+..+ ..+       ++|+++.++|||     +++| ++|++++++ 
T Consensus       216 tG~v~~l~~I~~~a~~~~~~~iv~~d~~~-~g~~~~~-~~~-------~~D~~~~s~~k~~~~~~~~Gp-g~G~l~~~~-  284 (447)
T PRK00451        216 FGVIEDLEEIAEIAHAGGALFIVGVDPVS-LGLLKPP-GEY-------GADIVVGEGQPLGIPLSFGGP-YLGFFATRK-  284 (447)
T ss_pred             CCeeCCHHHHHHHHHHCCCEEEEEcChHH-hccCCCc-ccC-------CCCEEEECCCcCCCCCCCCCC-CchHHHhhH-
Confidence            99999999999999999999998  6543 2222211 233       899999999997     4444 788888765 


Q ss_pred             hhhHhhhcCCccccccccc-----------ccCcccCCCCccccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q psy12303        310 GLLISCNQMSAEYLFMQDK-----------LYDVRYDTGDKVIQCGRH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEY  377 (480)
Q Consensus       310 ~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~r~-~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~  377 (480)
                      +...........+......           ...........++ +++. ..+++++..++.++.++++++.++..+++++
T Consensus       285 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~  363 (447)
T PRK00451        285 KLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNI-CTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHY  363 (447)
T ss_pred             HHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccc-cccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence            3333321110011000000           0000000111111 1110 1224555566777899999999999999999


Q ss_pred             HHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEE-eeeee-CCcccEEEEe
Q psy12303        378 MVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMV-GYQPL-NDLPNFFRNI  455 (480)
Q Consensus       378 l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~-~~~~~-~~~~~~~R~~  455 (480)
                      +.+.|++ +++++++..+....+++.+ +..                ..++.++|.++|++.. ..... .+..+++|++
T Consensus       364 l~~~L~~-~~g~~~~~~~~~~~~~v~~-~~~----------------~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs  425 (447)
T PRK00451        364 LAERLAE-IGGVELFDGPFFNEFVVRL-PKP----------------AEEVNEALLEKGILGGYDLGRYYPELGNHLLVC  425 (447)
T ss_pred             HHHHHhh-cCCEEecCCCeEEEEEEec-CCC----------------HHHHHHHHHhcCCCCCcccccccCCcCCEEEEe
Confidence            9999999 8899986333223333432 100                2357788888875421 11111 1224689999


Q ss_pred             cccCCCCHHHHHHHHHHHHHhh
Q psy12303        456 ISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       456 ~~~~~~t~~di~~~~~~l~~~~  477 (480)
                       ++..+|++||+++++.|+++.
T Consensus       426 -~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        426 -VTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             -cCCCCCHHHHHHHHHHHHHHh
Confidence             888899999999999998864

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.98  E-value=1.2e-29  Score=268.78  Aligned_cols=396  Identities=16%  Similarity=0.101  Sum_probs=267.4

Q ss_pred             CHHHHHHhcCCCCCC---CCCCHHHHHHHHHhhccCCccCC-CCCccccccCCCChHHhHHHHHHH---HcCcCCcch-h
Q psy12303         34 HPAEMKAMLDLDIPE---KGLPLQKLIDDCFTTLKYQVRTG-HPMFMNQLSCGLDVVSMAGEWLIA---TANTNMFTY-E  105 (480)
Q Consensus        34 ~p~~~~~~~~~~~p~---~~~~~~~i~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~-~  105 (480)
                      -|..++..-+..+|+   .-.+..++++.++++-..+.... +..+++..+....+.  +.+.+..   +.+-.++.. +
T Consensus       458 ~~~~~~r~~~~~~~~~f~~~~sE~e~~r~~~~l~~kn~~~~~~~i~lGsct~~~~p~--~~~~~~~~~~f~~~hP~qp~e  535 (954)
T PRK05367        458 LPAALLRTSAYLTHPVFNRYHSETEMMRYLRRLEDKDLALDRSMIPLGSCTMKLNAA--AEMIPITWPEFANLHPFAPAE  535 (954)
T ss_pred             CCHHHhcCCcccCCcccCCCCCHHHHHHHHHHHHhcCcCcccceeeCCcCCCcCCHH--HHHHHHhCccccccCCCChHH
Confidence            345555443333342   12378899999999887776533 344566533332222  3222222   222223333 4


Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECC-ChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAP-GGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC  184 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~-ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~  184 (480)
                      .+.+..+++.++.+|+++++|++.  +.+++ +|+.|++.+++++|...    ...|..   ++.+|+++...|+|+.++
T Consensus       536 ~~qG~l~~i~e~q~~l~eltG~d~--~sl~~~~ga~ge~agL~a~r~~~----~~~G~~---~r~~vlis~~aH~snp~s  606 (954)
T PRK05367        536 QAAGYRELIDQLEAWLAEITGYDA--VSLQPNAGAQGEYAGLLAIRAYH----ESRGEG---HRDVCLIPSSAHGTNPAS  606 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCC--EEECccHHHHHHHHHHHHHHHHh----hccCCC---CCCEEEEEchhhhhhHHH
Confidence            566788999999999999999985  55555 67788888887777521    112321   133799999999999999


Q ss_pred             HHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccc
Q psy12303        185 AAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWG  264 (480)
Q Consensus       185 ~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~  264 (480)
                      +..+|+   +++.+|++.+|.+|+++|++++++.   +.++++|++++|++..+..+|+++|+++|+++|+|+|||+|+.
T Consensus       607 a~~~G~---~vv~v~~d~~G~iD~~~L~~~i~~~---~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~  680 (954)
T PRK05367        607 AVMAGM---KVVVVACDENGNIDLDDLRAKAEEH---ADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANM  680 (954)
T ss_pred             HHHCCC---EEEEECCCCCCCcCHHHHHHHHhcc---CCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcCh
Confidence            999998   8999999989999999999999763   1238899999998874445899999999999999999999998


Q ss_pred             ccccccc-cccCcccCCCCCCccceeCccccCCCcccc-----eEEEEeCchhhHhhhcCCcccccccccccCcccCCCC
Q psy12303        265 GGLLLSK-KYRHPRLTGIERADSVTWNPHKLMGTLLQC-----STIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGD  338 (480)
Q Consensus       265 ~~~~~~~-~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~-----g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  338 (480)
                      ++..... ....       ++|++++|+|||++.|.|+     |.++++.. +        .+++.+......  .+...
T Consensus       681 ~al~~l~~pg~~-------GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~-l--------~p~lpg~~v~~~--~~~~~  742 (954)
T PRK05367        681 NAQVGLARPGDI-------GADVSHLNLHKTFCIPHGGGGPGVGPIGVKAH-L--------APFLPGHPVQIA--GGETG  742 (954)
T ss_pred             hhccCCCChhhc-------CCCEEEecCcccCCCCcCCCCCceEEEeeccc-c--------cccCCCCccCcC--CCCCC
Confidence            6654332 2233       8999999999999888764     48888642 1        122222110000  00001


Q ss_pred             ccccCCCCC----CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC--CceeEEEEEeecCccC-C
Q psy12303        339 KVIQCGRHN----DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE--PEMVNVSFWYLPTRVR-N  411 (480)
Q Consensus       339 ~~~~~~r~~----~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~--~~~~~v~f~~~~~~~~-~  411 (480)
                      .+..++.++    .++.+|+.++.+|.+|+++..++...+++|+.+.|++ ..++...++  +....++|.+.+.... +
T Consensus       743 ~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~-~~~~~~~~~~~~~~~e~i~~~~~~~~~~g  821 (954)
T PRK05367        743 IGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKD-HYPVLYTGANGRVAHECILDLRPLKESTG  821 (954)
T ss_pred             cCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-hcCccccCCCCCcccceEEEeecccccCC
Confidence            112222222    4456899999999999999999999999999999988 544433222  3344566655432110 1


Q ss_pred             CchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        412 MPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       412 ~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .           .+.++.++|.+.|...... .+.. .+.+|++ ++..++++|||+++++++.+.++
T Consensus       822 ~-----------~~~di~krL~d~G~~~~t~-~~pv-~~~l~i~-ptE~~s~~elDr~~~al~~i~~e  875 (954)
T PRK05367        822 I-----------TVDDIAKRLIDYGFHAPTM-SFPV-AGTLMVE-PTESESKAELDRFCDAMIAIRAE  875 (954)
T ss_pred             C-----------CHHHHHHHHHHCCCeEeec-CCcc-CCEEEEE-eeecCCHHHHHHHHHHHHHHHHH
Confidence            1           1356889999988654442 2333 5689999 88999999999999999987654

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.98  E-value=7.1e-30  Score=250.15  Aligned_cols=321  Identities=17%  Similarity=0.148  Sum_probs=226.1

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCC-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchh--HHH
Q psy12303        107 APVFILMETVVLEKMRQIIGWQG-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS--VRS  183 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s--~~~  183 (480)
                      ++...++.+++++++++++|.++ ..+++++|||+|+..++.+...              ||+ .|+++...|++  +..
T Consensus        27 ~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~--------------~g~-~vl~~~~~~~~~~~~~   91 (356)
T cd06451          27 SPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLE--------------PGD-KVLVGVNGVFGDRWAD   91 (356)
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCC--------------CCC-EEEEecCCchhHHHHH
Confidence            45566777889999999999954 4578999999999988876643              445 67777778876  456


Q ss_pred             HHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccc
Q psy12303        184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       184 ~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                      .++..|.   +++.+|.++++.+|++++++.+++.     +|++|++++++|++|.+.|+++|.++|+++|+++++|++|
T Consensus        92 ~~~~~g~---~~~~v~~~~~~~~~~~~l~~~i~~~-----~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~  163 (356)
T cd06451          92 MAERYGA---DVDVVEKPWGEAVSPEEIAEALEQH-----DIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVS  163 (356)
T ss_pred             HHHHhCC---CeEEeecCCCCCCCHHHHHHHHhcc-----CCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeeh
Confidence            6777787   8899999888899999999999761     2889999999999999999999999999999999999999


Q ss_pred             cccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhc--CCcccccccccccCcccCCCCccc
Q psy12303        264 GGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQ--MSAEYLFMQDKLYDVRYDTGDKVI  341 (480)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~  341 (480)
                      +.+..+.+....       ++|+++.++|||+++|.|+|+++++++ .......  ....+....... ...+..+ ...
T Consensus       164 ~~g~~~~~~~~~-------~~d~~~~s~~K~l~~p~g~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~  233 (356)
T cd06451         164 SLGGEPFRMDEW-------GVDVAYTGSQKALGAPPGLGPIAFSER-ALERIKKKTKPKGFYFDLLLL-LKYWGEG-YSY  233 (356)
T ss_pred             hccCcccccccc-------CccEEEecCchhccCCCCcceeEECHH-HHHHHHhcCCCCceeecHHHH-Hhhhccc-CCC
Confidence            876654443333       789999999999999999999998654 4444331  111111110000 0000000 000


Q ss_pred             cCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc--eeEEEEEeecCccCCCchhhHH
Q psy12303        342 QCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE--MVNVSFWYLPTRVRNMPHEKRL  418 (480)
Q Consensus       342 ~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~--~~~v~f~~~~~~~~~~~~~~~~  418 (480)
                      .++-.. ...++.++++.+...++++..++..++++++.+.|.+ . |++++.++.  .+.+++...+....        
T Consensus       234 ~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~--------  303 (356)
T cd06451         234 PHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEA-L-GLKLLAKPELRSPTVTAVLVPEGVD--------  303 (356)
T ss_pred             CCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCcccCCCceEEEECCCCCC--------
Confidence            001111 2345556677777778889999999999999999999 4 888875432  33443322232211        


Q ss_pred             HHhhhhhHHHHHHHHhc-ccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        419 NILGEITPILKGRMMQA-GTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       419 ~~l~~~~~~i~~~l~~~-g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                            ..++.+.|.++ |+.+ .++.....++++|++ ++..+|++||++++++|+++++
T Consensus       304 ------~~~~~~~L~~~~gI~~-~~g~~~~~~~~iRis-~~~~~~~e~v~~~~~~l~~~~~  356 (356)
T cd06451         304 ------GDEVVRRLMKRYNIEI-AGGLGPTAGKVFRIG-HMGEATREDVLGVLSALEEALK  356 (356)
T ss_pred             ------HHHHHHHHHHhCCEEE-ecccccccCCEEEEe-cCCCCCHHHHHHHHHHHHHHhC
Confidence                  24577888888 7544 332211124699999 8888999999999999998764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK02948 cysteine desulfurase; Provisional

Probab=99.98  E-value=4.8e-30  Score=253.49  Aligned_cols=346  Identities=16%  Similarity=0.193  Sum_probs=235.8

Q ss_pred             CccccccCCCChHHhHHHHHHHH----cCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHH
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIAT----ANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAA  149 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~  149 (480)
                      .||++..+++.+..++..+...+    .|+. ..+..+.....+.+++++.+++++|.+++++++++|+|+++..++.++
T Consensus         2 ~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~   80 (381)
T PRK02948          2 IYLDYAATTPMSKEALQTYQKAASQYFGNES-SLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSL   80 (381)
T ss_pred             EeccCCCCCCCCHHHHHHHHHHHHhcCCCCc-cccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHH
Confidence            48888888887777765333322    2222 223334555667788999999999998889999999999999998877


Q ss_pred             HHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEE
Q psy12303        150 RHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVN  229 (480)
Q Consensus       150 ~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~  229 (480)
                      .....          .+|+ +|+++..+|+++...+..+...+.+++.+|+++++.+|+++|+++++++      +++|+
T Consensus        81 ~~~~~----------~~g~-~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~------~~lv~  143 (381)
T PRK02948         81 LNALP----------QNKK-HIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAITPD------TVLAS  143 (381)
T ss_pred             HHhcc----------CCCC-EEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCCC------CEEEE
Confidence            64210          1334 7889999999987776554222228899999888999999999998654      88999


Q ss_pred             eccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCc
Q psy12303        230 CTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQD  309 (480)
Q Consensus       230 ~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~  309 (480)
                      +++++|+||.+.|+++|.++|+++|+++|+|++++.+..+.+...+       ++|+++.++||+++ |.|+|+++++++
T Consensus       144 ~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~-------~~d~~~~s~~K~~g-p~G~G~l~~~~~  215 (381)
T PRK02948        144 IQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEM-------GIDSLSVSAHKIYG-PKGVGAVYINPQ  215 (381)
T ss_pred             EECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccCcccC-------CCCEEEecHHhcCC-CCcEEEEEEcCC
Confidence            9999999999999999999999999999999999888765554444       78999999999865 888999998765


Q ss_pred             hhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCe
Q psy12303        310 GLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKF  389 (480)
Q Consensus       310 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~  389 (480)
                      ..+..       .......  ...+..++.+.     ....++..+++.+ .+++++..++..++++++.+.|++ . ++
T Consensus       216 ~~~~~-------~~~~~~~--~~~~~~~t~~~-----~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-~~  278 (381)
T PRK02948        216 VRWKP-------VFPGTTH--EKGFRPGTVNV-----PGIAAFLTAAENI-LKNMQEESLRFKELRSYFLEQIQT-L-PL  278 (381)
T ss_pred             CCCCC-------cccCCCC--CCCcCCCCccH-----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc-C-CC
Confidence            21110       0000000  00111111110     1233444445443 256788889999999999999998 5 55


Q ss_pred             EEecC--Cc---eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeee----e--------------C
Q psy12303        390 YLILE--PE---MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQP----L--------------N  446 (480)
Q Consensus       390 ~~~~~--~~---~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~----~--------------~  446 (480)
                      ++...  +.   ..++.|...  ...              ..++...|.++|+.+.....    .              .
T Consensus       279 ~v~~~~~~~~~~~~i~~~~~~--~~~--------------~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~  342 (381)
T PRK02948        279 PIEVEGHSTSCLPHIIGVTIK--GIE--------------GQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYE  342 (381)
T ss_pred             CEEEeCCCccCcCCEEEEEeC--CCC--------------HHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChH
Confidence            44321  11   123333221  111              13455566677744332110    0              0


Q ss_pred             CcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        447 DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       447 ~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ...+++|+| +++++|++||+++++.|+++++.
T Consensus       343 ~~~~~lRis-~~~~~t~~di~~l~~~l~~~~~~  374 (381)
T PRK02948        343 EAKQFVRFS-FGQQTTKDQIDTTIHALETIGNQ  374 (381)
T ss_pred             HhCceEEEE-cCCCCCHHHHHHHHHHHHHHHHH
Confidence            013689999 88999999999999999987654

>TIGR01814 kynureninase kynureninase

Probab=99.98  E-value=1.7e-29  Score=251.07  Aligned_cols=354  Identities=11%  Similarity=0.072  Sum_probs=232.4

Q ss_pred             CCCCccccccCCCChHHhHHHHHHHHc----CcCCcchhcC-hhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHH
Q psy12303         71 GHPMFMNQLSCGLDVVSMAGEWLIATA----NTNMFTYEIA-PVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYA  145 (480)
Q Consensus        71 ~~p~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~-~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~a  145 (480)
                      .+..||++...++.|..+. +.+..++    +.....+... .....+.+++.+ + +++|+++++++||+|+|+++..+
T Consensus        26 ~~~iyld~~a~g~~p~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~  102 (406)
T TIGR01814        26 NAVIYLDGNSLGLMPKAAR-NALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVGAKEDEVVVMNTLTINLHLL  102 (406)
T ss_pred             CCcEEecCCCcCcCcHHHH-HHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccCCCCCcEEEeCCchHHHHHH
Confidence            3457898766666555444 3333322    2211122111 122334444333 4 89999888999999999999888


Q ss_pred             HHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH----HHcCCCCCCe----EEeeCCCCCCCCHHHHHHHHHH
Q psy12303        146 FLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA----AVCGLGTDNC----VEVPSDKRGRLIPSELERLVLE  217 (480)
Q Consensus       146 l~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~----~~~g~~~~~v----~~v~~~~~~~~d~~~L~~~i~~  217 (480)
                      +......        |    .++.+|+++..+|++...++    +..|+   ++    +.++.++++.+|++++++.++.
T Consensus       103 ~~~~~~~--------~----~~~~~i~~~~~~~~s~~~~~~~~~~~~g~---~~~~~~~~~~~~~~g~~~~~~l~~~~~~  167 (406)
T TIGR01814       103 LASFYKP--------T----PKRYKILLEAKAFPSDHYAIESQLQLHGL---TVEESMVQIEPREEETLRLEDILDTIEK  167 (406)
T ss_pred             HHHhcCC--------c----CCccEEEecCCCCChHHHHHHHHHHhcCC---CcccceEEeccCCCCccCHHHHHHHHHh
Confidence            8765221        1    11337889989999965543    44565   44    5666666788999999998864


Q ss_pred             HHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCC
Q psy12303        218 RKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGT  297 (480)
Q Consensus       218 ~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~  297 (480)
                      .   +.+|++|+++++++.+|.+.|+++|+++|+++|++++||++|+.+.++.+...+       ++|++++++|||+++
T Consensus       168 ~---~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~-------gvD~~~~s~hK~l~g  237 (406)
T TIGR01814       168 N---GDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDW-------GVDFACWCTYKYLNA  237 (406)
T ss_pred             c---CCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccC-------CCCEEEEcCccccCC
Confidence            2   234899999999999999999999999999999999999999999988776566       899999999999987


Q ss_pred             cccceEEEEeCchhhHhhhcCCcccccccccc-cC--cccCCCCccccCCCC-C-CchHHHHHHHHhcHHHHHHHHHHHH
Q psy12303        298 LLQCSTIHFKQDGLLISCNQMSAEYLFMQDKL-YD--VRYDTGDKVIQCGRH-N-DIFKLWLQWRAKGDEGFEKQIDRLM  372 (480)
Q Consensus       298 p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~--~~~~~~~~~~~~~r~-~-~~l~~~~~l~~~g~~~~~~~~~~~~  372 (480)
                      |+| |+++++.+... .......+|....... +.  ..+......++.|.. . ...++..+++.+...++++..++..
T Consensus       238 ~pG-~~l~v~~~~~~-~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~  315 (406)
T TIGR01814       238 GPG-AGAFVHEKHAH-TERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSL  315 (406)
T ss_pred             CCC-eEEEEehhhhh-hcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            777 66666554322 2222222222111100 00  000000011112211 1 3344555666665667888889999


Q ss_pred             HHHHHHHHHHhcCC----CCeEEecCC----ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeee
Q psy12303        373 ELAEYMVKKIKSMP----DKFYLILEP----EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQP  444 (480)
Q Consensus       373 ~l~~~l~~~l~~~~----~g~~~~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~  444 (480)
                      ++++++.+.|.+ .    ++++++++.    ..++++|.+.   ..              ..++.++|.+.|+ ++..  
T Consensus       316 ~l~~~l~~~l~~-~~~~~~~~~i~~~~~~~~r~~~v~~~~~---~~--------------~~~~~~~L~~~gi-~v~~--  374 (406)
T TIGR01814       316 LLTDYLEELIKA-RCGGPPVLTIITPRDHAQRGCQLSLTHP---VP--------------GKAVFQALIKRGV-IGDK--  374 (406)
T ss_pred             HHHHHHHHHHHh-hcCCCCceEEeCCCChhhcCCeEEEEec---CC--------------HHHHHHHHHHCCE-EEec--
Confidence            999999999988 5    358887642    2346666532   11              2356777877874 3332  


Q ss_pred             eCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        445 LNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       445 ~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                       .. .+.+|+|+.++++|++||++++++|++++
T Consensus       375 -~~-~~~iRiS~~~~~nt~~did~l~~~l~~~~  405 (406)
T TIGR01814       375 -RE-PSVIRVAPVPLYNTFVDVYDAVNVLEEIL  405 (406)
T ss_pred             -cC-CCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence             12 36899993378999999999999998864

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>KOG1549|consensus

Probab=99.97  E-value=3.1e-30  Score=241.90  Aligned_cols=357  Identities=17%  Similarity=0.135  Sum_probs=234.9

Q ss_pred             cCCCCCccccccCCCChHHhHHHHHHH----HcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHH
Q psy12303         69 RTGHPMFMNQLSCGLDVVSMAGEWLIA----TANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLY  144 (480)
Q Consensus        69 ~~~~p~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~  144 (480)
                      +...|.|+++..+++.++.++..+...    +.|++... . +......-++.|+.+|+++|+++.+++||+|+|+||.+
T Consensus        40 ~~~~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~~-y-~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nl  117 (428)
T KOG1549|consen   40 HGTRPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSRS-Y-GWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNL  117 (428)
T ss_pred             CCCccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCccc-c-chhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHH
Confidence            345688999998888888888633332    34444331 1 11222223456999999999998889999999999999


Q ss_pred             HHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCc
Q psy12303        145 AFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDI  224 (480)
Q Consensus       145 al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~  224 (480)
                      +++......       +. . - +..|++...+|+++...++.+.-.+.+|+++|++.++..|++.+++.|+++      
T Consensus       118 vl~~v~~~~-------~~-~-~-~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~------  181 (428)
T KOG1549|consen  118 VLKGVARFF-------GD-K-T-KKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSK------  181 (428)
T ss_pred             HHHHhhccc-------cc-c-c-cceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCC------
Confidence            998765421       11 0 1 238999999999999999988433349999999988999999999999997      


Q ss_pred             cEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEE
Q psy12303        225 PFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTI  304 (480)
Q Consensus       225 ~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~  304 (480)
                      |++|.+.+.+|..|.+.|++||+.+|+++|+.+|+|+||+.|..+.|....       ++|+++++.|||++.| ++|++
T Consensus       182 T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV~el-------n~D~~s~s~HK~ygp~-~iGaL  253 (428)
T KOG1549|consen  182 TRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQEL-------NADFLSISAHKIYGPP-GIGAL  253 (428)
T ss_pred             ceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCccccHHHc-------CchheeeecccccCCC-cceEE
Confidence            999999999999999999999999999999999999999999999998888       9999999999999955 59999


Q ss_pred             EEeC-chhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHh
Q psy12303        305 HFKQ-DGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIK  383 (480)
Q Consensus       305 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~  383 (480)
                      |++. ...+.    ..+++..+. +..+  +..|+...     ..++.+-.+.+... ..+.-...+..++...+...+.
T Consensus       254 Yvr~~~~~~~----~~p~~~GGg-q~r~--~rsGT~~~-----~~~~~~gsA~e~~~-~~~~~~~~~~~~~~~~ll~~i~  320 (428)
T KOG1549|consen  254 YVRRKRPRLR----VEPPLSGGG-QERG--LRSGTVAT-----PLAVGLGSAAEFVN-KEMAYDEAIIKRLSEKLLMGIG  320 (428)
T ss_pred             EEccCCCccc----ccCcccCCc-cccc--cccCCcCc-----hhhhhhHHHHHHHH-hhcchhHHHHHHHHHHHHHHHh
Confidence            9986 22221    223443332 1111  11111111     12222223333221 1112222233335556665554


Q ss_pred             cCCCCeEEecC-----CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEee-----------ee-eC
Q psy12303        384 SMPDKFYLILE-----PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGY-----------QP-LN  446 (480)
Q Consensus       384 ~~~~g~~~~~~-----~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~-----------~~-~~  446 (480)
                      ...+++.+.+.     |.+.++.|.|..+..-.              .+........|..+..-           +. ..
T Consensus       321 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~~--------------~~~~~~~l~s~~a~~~~~~epsy~l~~~G~~~~  386 (428)
T KOG1549|consen  321 QSLPEVTLNGSGKSRYPGLVSLSFPYVEGESLL--------------MDLKDVALSSGSACTSASLEPSYVLRAIGVDED  386 (428)
T ss_pred             hhCchhhccCCcccccccceeeecccccCcchh--------------hhhhhhhhcccchhhcCCCCcchhhhhcCcchh
Confidence            32466655543     33445555432211100              01112222222211110           00 01


Q ss_pred             CcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        447 DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       447 ~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      -...++||+ ...++|++|++++++.+++.++.
T Consensus       387 ~~~~~iRis-~G~y~t~~di~~~~~~i~~~v~~  418 (428)
T KOG1549|consen  387 LAHSSIRIS-IGRYTTEEDIDYLVDAIKKLVSL  418 (428)
T ss_pred             hhcceeEEe-eeeeCcHHHHHHHHHHHHHHHHh
Confidence            115789999 88999999999999999987653

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.97  E-value=6e-29  Score=247.22  Aligned_cols=342  Identities=17%  Similarity=0.131  Sum_probs=232.0

Q ss_pred             CccccccCCCChHHhHHHHHHHHcCc--CC-cchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHH
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIATANT--NM-FTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAAR  150 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~  150 (480)
                      .|+++...++.+..++..+.......  +. ..|.......++.+++++.+++++|.++.++++++|+|+++..++.+..
T Consensus        19 ~yl~~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~   98 (397)
T TIGR01976        19 VFFDNPAGTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAIS   98 (397)
T ss_pred             EEecCCccCCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHH
Confidence            79999888877777764333332211  11 1233333445667789999999999977789999999998877666553


Q ss_pred             HhcCchhHhcCCCccCCceEEEecCCCchhHH----HHHHHcCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCcc
Q psy12303        151 HKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR----SCAAVCGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIP  225 (480)
Q Consensus       151 ~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~----~~~~~~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~  225 (480)
                      ...           .||+ .|+++..+|++..    ..++..|+   +++.++.++ ++.+|+++++++++++      +
T Consensus        99 ~~~-----------~~gd-~vl~~~~~~~s~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~l~~~i~~~------~  157 (397)
T TIGR01976        99 RRW-----------GPGD-EVIVTRLDHEANISPWLQAAERAGA---KVKWARVDEATGELHPDDLASLLSPR------T  157 (397)
T ss_pred             hcC-----------CCCC-EEEEcCCchHhHHHHHHHHHHhcCC---EEEEEeccccCCCcCHHHHHHhcCCC------c
Confidence            210           1556 7888889998865    34455676   888999876 6889999999999764      8


Q ss_pred             EEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEE
Q psy12303        226 FFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIH  305 (480)
Q Consensus       226 ~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~  305 (480)
                      ++|++++++|++|.+.|+++|.++|++||+++++|++|+.+..+.+..++       ++|++++++|||++ | ++|+++
T Consensus       158 ~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~-------~~d~~~~s~~K~~g-~-~~G~l~  228 (397)
T TIGR01976       158 RLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQAT-------GADFLTCSAYKFFG-P-HMGILW  228 (397)
T ss_pred             eEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCCHHHc-------CCCEEEEechhhcC-C-ceEEEE
Confidence            89999999999999999999999999999999999999876554444344       78999999999986 4 378888


Q ss_pred             EeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC-CchHHHHHHHHhcHH--------------HHHHHHHH
Q psy12303        306 FKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN-DIFKLWLQWRAKGDE--------------GFEKQIDR  370 (480)
Q Consensus       306 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~-~~l~~~~~l~~~g~~--------------~~~~~~~~  370 (480)
                      ++++ .+.........+.....   ...++.|      +..+ ..+++..+++.+...              ++++..++
T Consensus       229 ~~~~-~~~~l~~~~~~~~~~~~---~~~~~~g------t~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~  298 (397)
T TIGR01976       229 GRPE-LLMNLPPYKLTFSYDTG---PERFELG------TPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAY  298 (397)
T ss_pred             EcHH-HHhhCCCccccCccCCC---cchhcCC------CCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHH
Confidence            7654 44333222222211110   0111111      1111 234444555544222              36777888


Q ss_pred             HHHHHHHHHHHHhcCCCCeEEecC----CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeee--
Q psy12303        371 LMELAEYMVKKIKSMPDKFYLILE----PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQP--  444 (480)
Q Consensus       371 ~~~l~~~l~~~l~~~~~g~~~~~~----~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~--  444 (480)
                      ..++++++.+.|++ +++++++.+    +..+++.|...  ...              ..++.++|.+.|+.+.....  
T Consensus       299 ~~~l~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------------~~~l~~~L~~~gI~v~~~~~~~  361 (397)
T TIGR01976       299 ENRLAEYLLVGLSD-LPGVTLYGVARLAARVPTVSFTVH--GLP--------------PQRVVRRLADQGIDAWAGHFYA  361 (397)
T ss_pred             HHHHHHHHHHHHhc-CCCEEEeCCCCccCCCceEEEEeC--CcC--------------HHHHHHHHHHCCeEEEeCccch
Confidence            89999999999999 778998764    24455555321  111              23567788788754332110  


Q ss_pred             --------eCCcccEEEEecccCCCCHHHHHHHHHHH
Q psy12303        445 --------LNDLPNFFRNIISSAAVTEGDIDFLLTEM  473 (480)
Q Consensus       445 --------~~~~~~~~R~~~~~~~~t~~di~~~~~~l  473 (480)
                              .....+++|+| +++++|++||+++++.|
T Consensus       362 ~~~~~~~~~~~~~~~iRis-~~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       362 VRLLRRLGLNDEGGVVRVG-LAHYNTAEEVDRLLEAL  397 (397)
T ss_pred             HHHHHHhCCCCCCCeEEEE-eeccCCHHHHHHHHHhC
Confidence                    11114689999 88899999999999864

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK14012 cysteine desulfurase; Provisional

Probab=99.97  E-value=6.4e-29  Score=246.93  Aligned_cols=345  Identities=17%  Similarity=0.200  Sum_probs=229.4

Q ss_pred             CCccccccCCCChHHhHHHHHHHHcC---c--CCc--chhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHH
Q psy12303         73 PMFMNQLSCGLDVVSMAGEWLIATAN---T--NMF--TYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYA  145 (480)
Q Consensus        73 p~~~~~~~~~~~~~~~~~~~l~~~~~---~--~~~--~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~a  145 (480)
                      +.||++..+++.+..++. .+..++.   .  +..  .+..........+++++++++++|.++.++++++|+|+|+..+
T Consensus         4 ~iyld~a~~~~~~~~v~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~   82 (404)
T PRK14012          4 PIYLDYSATTPVDPRVAE-KMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDNLA   82 (404)
T ss_pred             eEEecCcCCCCCCHHHHH-HHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHH
Confidence            368999888887777764 3333321   1  111  1111111134455678899999999888899999999999999


Q ss_pred             HHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHc---CCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCC
Q psy12303        146 FLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVC---GLGTDNCVEVPSDKRGRLIPSELERLVLERKAKG  222 (480)
Q Consensus       146 l~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~---g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~  222 (480)
                      +.++.....          .+|+ +|+++..+|+++..++..+   |+   +++.++.++++.+|+++|+++++++    
T Consensus        83 l~~l~~~~~----------~~gd-~Vi~~~~~~~s~~~~~~~~~~~g~---~~~~v~~~~~g~~d~~~l~~~i~~~----  144 (404)
T PRK14012         83 IKGAAHFYQ----------KKGK-HIITSKTEHKAVLDTCRQLEREGF---EVTYLDPQSNGIIDLEKLEAAMRDD----  144 (404)
T ss_pred             HHHHHHhhc----------CCCC-EEEEecCccHHHHHHHHHHHhCCC---EEEEEccCCCCcCCHHHHHHhcCCC----
Confidence            887753210          1445 7889999999987776654   55   8889999888999999999999765    


Q ss_pred             CccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccce
Q psy12303        223 DIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCS  302 (480)
Q Consensus       223 ~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g  302 (480)
                        +++|++++++|++|.+.|+++|.++|+++|+++|+|++++.+..+.+....       ++|++++|+||++ +|.|+|
T Consensus       145 --t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~-------~~D~~~~s~~K~~-gp~g~G  214 (404)
T PRK14012        145 --TILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKL-------KVDLMSFSAHKIY-GPKGIG  214 (404)
T ss_pred             --CEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccC-------CCCEEEEehhhcc-CCCceE
Confidence              889999999999999999999999999999999999999988776554444       7999999999965 478999


Q ss_pred             EEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q psy12303        303 TIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKI  382 (480)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l  382 (480)
                      ++++++.....    ..+ ...+...  ...+..+....     ...+.+..++... ..++.+..++..++++++.+.|
T Consensus       215 ~l~~~~~~~~~----~~~-~~~g~~~--~~~~~~gt~~~-----~~~~~l~~al~~~-~~~~~~~~~~~~~l~~~l~~~L  281 (404)
T PRK14012        215 ALYVRRKPRVR----LEA-QMHGGGH--ERGMRSGTLPT-----HQIVGMGEAARIA-KEEMATENERIRALRDRLWNGI  281 (404)
T ss_pred             EEEEecCCCCC----CCc-eecCCCc--cCCccCCCcCH-----HHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHH
Confidence            99998764321    111 1111110  00111111110     1122232333332 3456777889999999999999


Q ss_pred             hcCCCCeEEecCC-----ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH----hcccEEEeee----------
Q psy12303        383 KSMPDKFYLILEP-----EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM----QAGTMMVGYQ----------  443 (480)
Q Consensus       383 ~~~~~g~~~~~~~-----~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~----~~g~~~~~~~----------  443 (480)
                      ++ ++++.+..++     ....++|...+ .                 .++...|.    ..|..+....          
T Consensus       282 ~~-~~~i~~~~~~~~~~~~~~~~~~~~~~-~-----------------~~~~~~l~~~~i~~g~~~~~~~~~~~~~~~~~  342 (404)
T PRK14012        282 KD-IEEVYLNGDLEQRVPGNLNVSFNYVE-G-----------------ESLIMALKDLAVSSGSACTSASLEPSYVLRAL  342 (404)
T ss_pred             hc-CCCEEEeCCccccCCCEEEEEEeCcC-H-----------------HHHHHhCCCeEEEchhhhCCCCCCCCHHHHHc
Confidence            99 8999876431     12223332211 0                 11222221    1121111000          


Q ss_pred             ee--CCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        444 PL--NDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       444 ~~--~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.  ....+.+|++ +++++|++|||++++.|+++++.
T Consensus       343 ~~~~~~~~~~iRls-~~~~~t~~dvd~~~~~l~~~~~~  379 (404)
T PRK14012        343 GLNDELAHSSIRFS-LGRFTTEEEIDYAIELVRKSIGK  379 (404)
T ss_pred             CCChhhcCceEEEE-ecCCCCHHHHHHHHHHHHHHHHH
Confidence            00  0014689999 88999999999999999987653

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.97  E-value=9.7e-29  Score=244.57  Aligned_cols=324  Identities=14%  Similarity=0.076  Sum_probs=228.5

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCC-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhH--HH
Q psy12303        107 APVFILMETVVLEKMRQIIGWQG-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV--RS  183 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~--~~  183 (480)
                      ++.+.++.+++++++++++|++. ..++++++||.++..++....+              ||+ .|+++...|++.  ..
T Consensus        37 ~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~--------------~Gd-~Vlv~~~~~~~~~~~~  101 (401)
T PLN02409         37 SPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLS--------------PGD-KVVSFRIGQFSLLWID  101 (401)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCC--------------CCC-EEEEeCCCchhHHHHH
Confidence            56777888899999999999965 4678999999988877765432              556 677777888765  35


Q ss_pred             HHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHH--HHHcCcEEEeec
Q psy12303        184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADI--CQKYNMWLHVDA  261 (480)
Q Consensus       184 ~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i--~~~~~~~l~vD~  261 (480)
                      .++..|+   +++.++.+.++.+|+++++++++++.  +.++++|++++++|+||.+.|+++|.++  |+++|+++++|+
T Consensus       102 ~~~~~g~---~v~~v~~~~~~~~~~~~l~~~l~~~~--~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~  176 (401)
T PLN02409        102 QMQRLNF---DVDVVESPWGQGADLDILKSKLRQDT--NHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDG  176 (401)
T ss_pred             HHHHcCC---ceEEEECCCCCCCCHHHHHHHHhhCc--CCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEc
Confidence            5666777   88999988766789999999998631  0138899999999999999999999999  999999999999


Q ss_pred             cccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCC-c-ccccccccccCcccCCCCc
Q psy12303        262 AWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMS-A-EYLFMQDKLYDVRYDTGDK  339 (480)
Q Consensus       262 a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~~~  339 (480)
                      +++.+..+.+...+       ++|++++++|||+++|.|+|+++++++ .++...... . .|+.....  ......+..
T Consensus       177 v~s~g~~~id~~~~-------~~D~~~~s~~K~l~~P~G~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~  246 (401)
T PLN02409        177 VSSIGALDFRMDEW-------GVDVALTGSQKALSLPTGLGIVCASPK-ALEASKTAKSPRVFFDWADY--LKFYKLGTY  246 (401)
T ss_pred             ccccCCcccccccc-------CccEEEEcCccccCcCCCcceeEECHH-HHHHHhcCCCCCeecCHHHH--HHHHhcCCC
Confidence            99988877766566       899999999999999999999997655 344433211 1 12110000  000001100


Q ss_pred             cccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC-c--eeE-EEEEeecCccCCCch
Q psy12303        340 VIQCGRH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP-E--MVN-VSFWYLPTRVRNMPH  414 (480)
Q Consensus       340 ~~~~~r~-~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~-~--~~~-v~f~~~~~~~~~~~~  414 (480)
                      . +.+-. ....++..+++.+...|++++.++..++++++.+.|++  .|++++.+. .  +.. ++|. .|....    
T Consensus       247 ~-~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~--~g~~~~~~~~~~~s~~v~~~~-~p~~~~----  318 (401)
T PLN02409        247 W-PYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEA--WGLKLCTKKPEWRSDTVTAVV-VPEGID----  318 (401)
T ss_pred             C-CCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--cCCeeccCChhhcccceEEEe-CCCCCC----
Confidence            0 01111 12345555666666778999999999999999999998  489987642 2  323 3343 232221    


Q ss_pred             hhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        415 EKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       415 ~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                                ..++.+.+.++..+.+..+...-+..+||++ .+.+++++||..++++|++.+++
T Consensus       319 ----------~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig-~~g~~~~~~~~~~~~~~~~~l~~  372 (401)
T PLN02409        319 ----------SAEIVKNAWKKYNLSLGLGLNKVAGKVFRIG-HLGNVNELQLLGALAGVEMVLKD  372 (401)
T ss_pred             ----------HHHHHHHHHHhCCEEEEcCCCcccCCEEEEc-CCCCCCHHHHHHHHHHHHHHHHH
Confidence                      1345566655544555544333125799999 66688999999999999987654

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.97  E-value=2.5e-28  Score=257.35  Aligned_cols=381  Identities=16%  Similarity=0.103  Sum_probs=266.1

Q ss_pred             CCHHHHHHHHHhhccCCccCCCCCccccccCCCChHHhHHHHHHH---HcCcCCcch-hcChhhHHHHHHHHHHHHHHhC
Q psy12303         51 LPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIA---TANTNMFTY-EIAPVFILMETVVLEKMRQIIG  126 (480)
Q Consensus        51 ~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~-~~~~~~~~~e~~~~~~la~~~g  126 (480)
                      .+.-++++.+.++-..+....+. ++...++...+...+.+....   +.+-+++.. +...+..++..++++++++++|
T Consensus       504 ~se~~~~r~~~~l~~~~~~~~~~-~~plgsctmk~n~~~~~~~~~~~~~~~~hp~~p~~~~~g~~~~~~~~r~~la~i~g  582 (993)
T PLN02414        504 HSEHELLRYLHRLQNKDLSLVHS-MIPLGSCTMKLNATTEMMPVTWPEFANIHPFAPVDQAQGYQEMFEDLGDLLCEITG  582 (993)
T ss_pred             cCHHHHHHHHHHHhhcccccccC-CccCcccccccCchhhhhhhcCcchhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            46778888887776655544332 334445554444444444333   233334333 3456777888899999999999


Q ss_pred             CCCCCeEECCChh----HHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC
Q psy12303        127 WQGGDSILAPGGS----ISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK  202 (480)
Q Consensus       127 ~~~~~~~~t~ggt----~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~  202 (480)
                      ++  .++|++++|    +|+++++++..+.       +|...   +.+|+++..+|.++...+...|+   +++.||+++
T Consensus       583 ~~--~v~f~pnaga~ge~a~~~vi~~~~~~-------~Gd~~---r~~vli~~~aH~sn~a~a~~~G~---~vv~v~~d~  647 (993)
T PLN02414        583 FD--SFSLQPNAGAAGEYAGLMVIRAYHLS-------RGDHH---RNVCIIPVSAHGTNPASAAMCGM---KIVVVGTDA  647 (993)
T ss_pred             CC--eEEEcCCCcHHHHHHHHHHHHHHHhc-------cCCCC---CCEEEeCCCcCccCHHHHHHCCC---EEEEeccCC
Confidence            94  599999999    8888888887542       23211   23899999999999999999888   999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccc-ccccccCcccCCC
Q psy12303        203 RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLL-LSKKYRHPRLTGI  281 (480)
Q Consensus       203 ~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~-~~~~~~~~~~~~~  281 (480)
                      +|.+|+++|++++++..+   ++++|++++++|..|..+|+++|+++|+++|+.+++|+|+..+.. ..+....      
T Consensus       648 ~G~vDle~L~~~i~~~~~---~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~------  718 (993)
T PLN02414        648 KGNINIEELRKAAEAHKD---NLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFI------  718 (993)
T ss_pred             CCCcCHHHHHHHHhccCC---CeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCcccc------
Confidence            999999999999985321   289999999999999999999999999999999999999987763 3333345      


Q ss_pred             CCCccceeCccccCCCccc-----ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC-------CCc
Q psy12303        282 ERADSVTWNPHKLMGTLLQ-----CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-------NDI  349 (480)
Q Consensus       282 ~~~D~~~~s~hK~~~~p~~-----~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-------~~~  349 (480)
                       ++|+++++.||++++|.|     +|.++++.. +..    ..+.+..........+..  ..++ |++.       ..+
T Consensus       719 -GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~-L~p----~lPg~~v~~~~~~~~r~~--~s~i-Gt~~~a~~g~al~l  789 (993)
T PLN02414        719 -GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAP----FLPSHPVVPTGGIPRPEK--TQPL-GTISAAPWGSALIL  789 (993)
T ss_pred             -CCCEEEecCCccCCcCcccCCCCeeeEEEchh-hcc----cCCCCccccCCCcccccC--CCCc-CCccchhhhhHHHH
Confidence             899999999999997765     888887652 221    223332111110000001  1111 2222       234


Q ss_pred             hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC--CceeEEEEEeecCccCCCchhhHHHHhhhhhHH
Q psy12303        350 FKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE--PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPI  427 (480)
Q Consensus       350 l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~--~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~  427 (480)
                      +.+|..+..+|.+|+.+..++...+++|+.+.|.+ ..++...++  +....+++...  .+.....      ..  ..+
T Consensus       790 ~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~-~~~~~~~~~~~~~~hEfv~~~~--~l~~~~g------~~--~~d  858 (993)
T PLN02414        790 PISYTYIAMMGSEGLTDASKIAILNANYMAKRLEG-HYPVLFRGKNGTCAHEFIIDLR--PFKNTAG------IE--PED  858 (993)
T ss_pred             HHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHh-hCCccccCCCCCeeeeEEEecc--ccccccC------CC--HHH
Confidence            57788889999999999999999999999999988 566655332  22333433322  1110000      00  246


Q ss_pred             HHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        428 LKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       428 i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.++|.+.|..... ..+.. .+.+|++ ++...+++|||+++++|..+.++
T Consensus       859 i~krL~d~Gihapt-~~~pv-~~~lmie-pTE~~skeelDrf~~al~~i~~e  907 (993)
T PLN02414        859 VAKRLMDYGFHAPT-MSWPV-PGTLMIE-PTESESKAELDRFCDALISIREE  907 (993)
T ss_pred             HHHHHHHcCcEEee-ecccc-CCEEEEE-eeeeCCHHHHHHHHHHHHHHHHH
Confidence            78889888754333 22344 6799999 99999999999999999887654

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.97  E-value=1.4e-28  Score=244.81  Aligned_cols=372  Identities=16%  Similarity=0.087  Sum_probs=237.3

Q ss_pred             HHHHHHHhhccCCccCCCC-CccccccCCCChHHhHHHHHHHHcCcCCcchhc-----ChhhHHHHHHHHHHHHHHhCCC
Q psy12303         55 KLIDDCFTTLKYQVRTGHP-MFMNQLSCGLDVVSMAGEWLIATANTNMFTYEI-----APVFILMETVVLEKMRQIIGWQ  128 (480)
Q Consensus        55 ~i~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~e~~~~~~la~~~g~~  128 (480)
                      +|++.+.++-.......++ ..++....+..++.++.+..... . ....|..     ..+..++.+++++++++++|.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~p~~~~~~~~~~-~-~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~   80 (398)
T cd00613           3 EVLRHLKRLASKNKALDQSMSFLGSGTYKHNPPAVIKRNILEN-E-FYTAYTPYQPEISQGRLQALFELQTMLCELTGMD   80 (398)
T ss_pred             HHHHHHHHHHhcCcCcccCcccccccccCCcCcHHHHHHhccc-c-CcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCC
Confidence            5667765543333222222 34444444455555554444443 1 1112222     4566788899999999999997


Q ss_pred             CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC-CCCeEEeeCCCCCCCC
Q psy12303        129 GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG-TDNCVEVPSDKRGRLI  207 (480)
Q Consensus       129 ~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~-~~~v~~v~~~~~~~~d  207 (480)
                      ...++++++|+.+...++.+++..       .+    +|+ +|+++...|+++..++..+|.. ..+++.+|+++++.+|
T Consensus        81 ~~~v~~~~~g~~~~~~~~~~~~~~-------~~----~gd-~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d  148 (398)
T cd00613          81 VANASLQDEATAAAEAAGLAAIRA-------YH----KRN-KVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVD  148 (398)
T ss_pred             ccceeccCchHHHHHHHHHHHHhc-------cc----CCC-EEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcC
Confidence            666888887776655555555432       10    245 7889999999999999888711 1278889988778899


Q ss_pred             HHHHHHHHHHHHHCCCccEEEEeccCCCccccccCh-HHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCcc
Q psy12303        208 PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPI-EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADS  286 (480)
Q Consensus       208 ~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l-~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~  286 (480)
                      +++|++++.++      +++|++++++ ++|.+.|+ ++|.++|++||+|+|+|++|+.+.........       ++|+
T Consensus       149 ~~~l~~~i~~~------t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~-------~~d~  214 (398)
T cd00613         149 LEALKEEVSEE------VAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEY-------GADI  214 (398)
T ss_pred             HHHHHHhcCCC------eEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHc-------CCCE
Confidence            99999988654      8999999985 78999885 99999999999999999998765544443334       7899


Q ss_pred             ceeCccccCCCc-----ccceEEEEeCchhhHhhhcCCcccccccccccCc-----------ccCCCCccccCCCCCCch
Q psy12303        287 VTWNPHKLMGTL-----LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDV-----------RYDTGDKVIQCGRHNDIF  350 (480)
Q Consensus       287 ~~~s~hK~~~~p-----~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~r~~~~l  350 (480)
                      +++++|||+ .|     ++.|++++++ ............+..........           .++.+..++..+....+.
T Consensus       215 ~~~s~~K~~-~p~g~Ggp~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~  292 (398)
T cd00613         215 VVGNLQKTG-VPHGGGGPGAGFFAVKK-ELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLAL  292 (398)
T ss_pred             EEeeccccC-CCCCCCCCceeEEEEhh-hhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHH
Confidence            999999999 55     4466777654 34333211111111000000000           011111111112222445


Q ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHH
Q psy12303        351 KLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKG  430 (480)
Q Consensus       351 ~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~  430 (480)
                      .++..+..++.++++++.++..++++++.+.|++ +++......+....++|.....  .+         .  ...++.+
T Consensus       293 ~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~v~~~~~~~--~~---------~--~~~~~~~  358 (398)
T cd00613         293 MAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKE-VGGVLPFNGPFFHEFVLRLPPL--YG---------I--RAEDLAK  358 (398)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccCCCCeeEEEEEEcCCc--ch---------H--HHHHHHH
Confidence            6667777778899999999999999999999999 6655422223344455543210  00         0  0245677


Q ss_pred             HHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHH
Q psy12303        431 RMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEM  473 (480)
Q Consensus       431 ~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l  473 (480)
                      +|.++|+.+ ......+ .+.+|++ ++.++|++|||++++.|
T Consensus       359 ~L~~~gi~~-~~~~~~~-~~~lRis-~~~~~t~edid~~~~~L  398 (398)
T cd00613         359 ALIDGGFHA-PTMYLPV-DGTLMIE-PTETETKEELDALLEAL  398 (398)
T ss_pred             hhhhcCccc-cccccCC-CCeEEEE-cCCCCCHHHHHHHHHhC
Confidence            788888543 2211123 4799999 99999999999999864

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.97  E-value=9.8e-28  Score=236.64  Aligned_cols=313  Identities=15%  Similarity=0.193  Sum_probs=218.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG  191 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~  191 (480)
                      ....++++.+++++|.++  +++++|+|+||..++.+...              +|+ .|+++..+|++...++...|+ 
T Consensus        63 ~~~~~l~~~lA~~~g~~~--~~~~~g~t~a~~~al~~l~~--------------~gd-~Vlv~~~~h~s~~~~~~~~G~-  124 (387)
T PRK09331         63 PPIADFHEDLAEFLGMDE--ARVTHGAREGKFAVMHSLCK--------------KGD-YVVLDGLAHYTSYVAAERAGL-  124 (387)
T ss_pred             hHHHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHhcC--------------CCC-EEEECCCchHHHHHHHHHcCC-
Confidence            345667888999999975  78999999999999887753              445 788999999999998888887 


Q ss_pred             CCCeEEeeC--CCCCCCCHHHHHHHHHHHHH-CCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccc
Q psy12303        192 TDNCVEVPS--DKRGRLIPSELERLVLERKA-KGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLL  268 (480)
Q Consensus       192 ~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~-~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~  268 (480)
                        +++.+|.  ++++.+|++++++++++..+ .+..+++|+++++++++|.+.|+++|.++|+++|+++|+|++|+.+.+
T Consensus       125 --~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~  202 (387)
T PRK09331        125 --NVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRM  202 (387)
T ss_pred             --EEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCc
Confidence              8889998  67788999999999976422 234589999999999999999999999999999999999999999877


Q ss_pred             ccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC-C
Q psy12303        269 LSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-N  347 (480)
Q Consensus       269 ~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-~  347 (480)
                      +.+...+       ++|++++++||++++|.+.|++++++ +.+........+|.....       .    .+.++.+ .
T Consensus       203 ~~~~~~~-------g~D~~~~s~~K~l~~~~~~G~l~~~~-~~i~~~~~~~~~~~~~~~-------~----~~~~~~~~~  263 (387)
T PRK09331        203 PVDGKKL-------GADFIVGSGHKSMAASAPSGVLATTE-EYADKVFRTSRKFGVKEV-------E----LLGCTLRGA  263 (387)
T ss_pred             CCCHHHc-------CCCEEEeeCcccccCCCCEEEEEECH-HHHhhcccccCCCcccce-------e----eeceecCch
Confidence            6665455       78999999999999999999888754 444443322222221100       0    0111111 1


Q ss_pred             CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-Cc-eeEEEEEeecCccCCCchhhHHHHhhhhh
Q psy12303        348 DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-PE-MVNVSFWYLPTRVRNMPHEKRLNILGEIT  425 (480)
Q Consensus       348 ~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~~-~~~v~f~~~~~~~~~~~~~~~~~~l~~~~  425 (480)
                      .+..+++++..+ .+. .+..++.+++++++++.|.+ ++|++++.+ +. .+++.+.. | .+..     .......-.
T Consensus       264 ~~~~~~aal~~~-~~~-~~~~~~~~~~~~~l~~~L~~-l~g~~~~~~~~~~~~i~~~~~-~-~~~~-----~~~~~~~~~  333 (387)
T PRK09331        264 PLVTLMASFPHV-VER-VKRWDEEVKKARWFVDELEK-IEGFKQLGEKPRNHDLMKFET-P-SFDE-----IAKKHKRRG  333 (387)
T ss_pred             HHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHhc-CCCEEEeccCcCcCCeEEEeC-C-chhH-----Hhhhccccc
Confidence            234444454432 122 23456678899999999999 889999753 22 22333321 2 2110     000000012


Q ss_pred             HHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        426 PILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       426 ~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ..+.+.|.+.|+..+.    .+...++|+.  +..+|++|+++++++|+++.++
T Consensus       334 ~~~~~~L~~~gI~~~~----~~~~~i~ri~--~~g~t~~di~~l~~aL~~i~~~  381 (387)
T PRK09331        334 FFLYEELKKRGIHGIK----PGATKEFKLS--TYGLTWEQVEYVADAFKEIAEK  381 (387)
T ss_pred             hhHHHHHHHcCceEEc----cCCceEEEEE--eccCCHHHHHHHHHHHHHHHHh
Confidence            4577888888864222    2223566765  3447999999999999988764

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.97  E-value=2.6e-28  Score=239.50  Aligned_cols=321  Identities=14%  Similarity=0.118  Sum_probs=223.2

Q ss_pred             hhhHHHHHHHHHHHHHHhCCCCC--CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchh-HHHH
Q psy12303        108 PVFILMETVVLEKMRQIIGWQGG--DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS-VRSC  184 (480)
Q Consensus       108 ~~~~~~e~~~~~~la~~~g~~~~--~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s-~~~~  184 (480)
                      +.+.++.+++++.+++++|+++.  .+++|+|||+|+..++..+..              +|+.+|+++...|.+ +...
T Consensus        31 ~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~--------------~~~~vlv~~~~~~~~~~~~~   96 (363)
T TIGR02326        31 SDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVP--------------KDGKLLVVINGAYGARIVQI   96 (363)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCC--------------CCCeEEEEeCChhhHHHHHH
Confidence            44566667889999999999753  689999999999988877643              335467767667766 3566


Q ss_pred             HHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccc
Q psy12303        185 AAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWG  264 (480)
Q Consensus       185 ~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~  264 (480)
                      ++..|.   +++.+|.++++.+|+++++++++++    ..+++|.+++.+|+||.+.|+++|.++|++||++++||++++
T Consensus        97 a~~~g~---~~~~v~~~~~~~~d~~~l~~~l~~~----~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~  169 (363)
T TIGR02326        97 AEYLGI---PHHVVDTGEVEPPDVVEVEAILAAD----PAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSS  169 (363)
T ss_pred             HHHcCC---ceEEEeCCCCCCCCHHHHHHHHhhC----CCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEcccc
Confidence            788887   8889999888899999999998763    125678899999999999999999999999999999999999


Q ss_pred             ccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccC-cccCCCCccccC
Q psy12303        265 GGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYD-VRYDTGDKVIQC  343 (480)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~  343 (480)
                      .+..+.+...+       ++|+++.++|||+++|.|.|+++++++. +........++.......+. .....+...  .
T Consensus       170 ~g~~~~~~~~~-------~~D~~~~s~~K~l~~p~G~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--f  239 (363)
T TIGR02326       170 FGGIPIDIAEL-------HIDYLISSANKCIQGVPGFGFVIARQAE-LAACKGNARSLSLDLYDQWRCMEDNHGKWR--F  239 (363)
T ss_pred             ccCcccchhhc-------CccEEEecCccccccCCcceEEEECHHH-HHHhhcCCCceeecHHHHHHHHhccCCCCC--C
Confidence            88776665555       7899999999999999999999987653 33322111111100000000 000000000  0


Q ss_pred             CCC-CCchHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC--ceeE-EEEEeecC-ccCCCchhhH
Q psy12303        344 GRH-NDIFKLWLQWRAKGDE-GFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP--EMVN-VSFWYLPT-RVRNMPHEKR  417 (480)
Q Consensus       344 ~r~-~~~l~~~~~l~~~g~~-~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~--~~~~-v~f~~~~~-~~~~~~~~~~  417 (480)
                      +.. ....++..+++.+..+ +++++.++..++++++.+.|++ . |++++.++  ..++ .+|.+.+. ...       
T Consensus       240 t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~-------  310 (363)
T TIGR02326       240 TSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRA-L-GFEPLLDDEIQSPIITSFYSPEDPDYR-------  310 (363)
T ss_pred             CCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCcccCCceEEEEECCCCCCCC-------
Confidence            111 1334455556555444 4788889999999999999998 4 88876543  3333 33433211 111       


Q ss_pred             HHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        418 LNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       418 ~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                             ..++.+.|.++|+. +.++.... .+++|++ .+..++.+|++++++.|++++.
T Consensus       311 -------~~~v~~~L~~~gi~-v~~g~~~~-~~~iRi~-~~~~~~~edv~~~l~~l~~~l~  361 (363)
T TIGR02326       311 -------FADFYQRLKEQGFV-IYPGKVSQ-VDCFRIG-NIGEVDAADITRLLTAIGKAMY  361 (363)
T ss_pred             -------HHHHHHHHHHCCEE-EECCcCCC-CCEEEEe-cCCCCCHHHHHHHHHHHHHHhC
Confidence                   23566778778744 44432222 4689999 5556899999999999998764

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.97  E-value=6.6e-28  Score=235.65  Aligned_cols=304  Identities=15%  Similarity=0.151  Sum_probs=208.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHhhccCCccCCCCCccccccCCCChHHhHHHHHHH----H----------cCcCCcchhcCh
Q psy12303         43 DLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIA----T----------ANTNMFTYEIAP  108 (480)
Q Consensus        43 ~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~----~----------~~~~~~~~~~~~  108 (480)
                      ...+|++|.+.+.|...+.++-.    ..|.+|.++..-+.--.-+...+.+.    +          ....+-. ..++
T Consensus        27 ~~~~p~~g~~~~~i~~~l~~l~~----~~~~~~~~~~~~gere~rv~~~~~~~~~~~~~hgigr~~~l~~~q~ka-~gss  101 (444)
T TIGR03531        27 QRKIPEEGWDDETIELFLHELSV----MDTNNFPNNVGVGEREGRVFSKLVARRHYRFCHGIGRSGDLVAPQPKA-AGSS  101 (444)
T ss_pred             cCcCCccCCCHHHHHHHHHHHhc----CCcCCCccccCcCcccceeechhhhhcccceecCCCCcccccccCccc-cCcc
Confidence            47799999999999999887643    12222222222221111111111110    0          0000101 1234


Q ss_pred             hhHHHHHHHHHHHHHHhCCCC-CCeEECCChh-HHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHH
Q psy12303        109 VFILMETVVLEKMRQIIGWQG-GDSILAPGGS-ISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAA  186 (480)
Q Consensus       109 ~~~~~e~~~~~~la~~~g~~~-~~~~~t~ggt-~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~  186 (480)
                      ....+..++..++++++|.+. ..+++++||| .++.+++.+++.+.           .+|+ .|+++..+|.|+.+++.
T Consensus       102 ~~~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~-----------~~gd-~VI~p~~th~S~~kAi~  169 (444)
T TIGR03531       102 LLYKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKR-----------PKAK-YVIWPRIDQKSCIKAIS  169 (444)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcC-----------CCCC-EEEEECcChHHHHHHHH
Confidence            456788889999999999974 3488999999 78888887775321           0235 67777789999999999


Q ss_pred             HcCCCCCCeEEeeC---CCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccc
Q psy12303        187 VCGLGTDNCVEVPS---DKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       187 ~~g~~~~~v~~v~~---~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                      ++|+   +.++|++   ++++.+|+++|+++|++...  ..+.+|+.+.+++..|..+|+++|.++|++||+|+|+|+||
T Consensus       170 ~~G~---~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~--kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAy  244 (444)
T TIGR03531       170 TAGF---EPRVIETVLDGDELTTDVEDIERAIEEIGP--DNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAY  244 (444)
T ss_pred             HcCC---eEEEeeeeecCcCCCcCHHHHHHHHHhccC--CCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcC
Confidence            9999   6778884   35689999999999985311  22444554444556678999999999999999999999999


Q ss_pred             cccccccccccCccc-CCCC--CCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcc
Q psy12303        264 GGGLLLSKKYRHPRL-TGIE--RADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKV  340 (480)
Q Consensus       264 ~~~~~~~~~~~~~~~-~~~~--~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  340 (480)
                      +.+.....   . .. .+.+  .+|++++|+||++.+|.++|+++++++++......   .|...               
T Consensus       245 g~~~~~~~---~-~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~---~y~g~---------------  302 (444)
T TIGR03531       245 GLQSNKYM---E-LINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISK---SYPGR---------------  302 (444)
T ss_pred             cCcChhhh---h-hhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHH---hccCC---------------
Confidence            97442211   1 11 2221  47999999999999998888888888877665432   12100               


Q ss_pred             ccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC---CeEEecC
Q psy12303        341 IQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD---KFYLILE  394 (480)
Q Consensus       341 ~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~---g~~~~~~  394 (480)
                         .....++.+|+++..+|.+++++++++..++++++.+.|++ +.   |-+++..
T Consensus       303 ---~~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~-l~~~~~~~~~~~  355 (444)
T TIGR03531       303 ---ASASPSLDVLITLLSLGSKGYLELLKERKEMYKYLKELLQK-LAERHGERLLDT  355 (444)
T ss_pred             ---CCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcEeecC
Confidence               00124678999999999999999999999999999999887 42   5566543

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.96  E-value=3.2e-27  Score=230.92  Aligned_cols=291  Identities=17%  Similarity=0.141  Sum_probs=206.0

Q ss_pred             ccccccCCCChHHhHHHHHHHHcC--cCCcc--hhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHH
Q psy12303         75 FMNQLSCGLDVVSMAGEWLIATAN--TNMFT--YEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAAR  150 (480)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~--~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~  150 (480)
                      |+++...++.+..+...+.....+  .+...  +..+....++.+++++++++++|.+++++++|+|+|+++..++.++.
T Consensus         1 yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~   80 (353)
T TIGR03235         1 YLDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLA   80 (353)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHH
Confidence            788888887777766433332211  22221  22233345667789999999999988889999999999999888765


Q ss_pred             HhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEe
Q psy12303        151 HKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNC  230 (480)
Q Consensus       151 ~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~  230 (480)
                      ..        +.  .+|+..|+++..+|+++......+...+.+++.+|.++++.+|+++|+++++++      +++|++
T Consensus        81 ~~--------~~--~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~~------~~lv~~  144 (353)
T TIGR03235        81 RA--------GE--QKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIRPD------TLLVSI  144 (353)
T ss_pred             Hh--------cc--cCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCCC------CEEEEE
Confidence            42        10  133348999999999987776554221228899999888999999999998654      899999


Q ss_pred             ccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCch
Q psy12303        231 TSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDG  310 (480)
Q Consensus       231 ~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~  310 (480)
                      ++++|++|.+.|+++|.++|+++|+|+|+|++++.+..+.+...+       ++|++++++|||+ +|.|+|+++++++.
T Consensus       145 ~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~-------~~D~~~~s~~K~~-gp~g~g~l~~~~~~  216 (353)
T TIGR03235       145 MHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSAD-------RIDLISCSGHKIY-GPKGIGALVIRKRG  216 (353)
T ss_pred             EcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCcccccccc-------CCCEEEeehhhcC-CCCceEEEEEccCc
Confidence            999999999999999999999999999999999999887766555       7999999999995 58999999998763


Q ss_pred             hhHhhhcCCcccccccccccCcccCCCCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCe
Q psy12303        311 LLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKF  389 (480)
Q Consensus       311 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~  389 (480)
                      ....  ... ++......  ...+..+      +... ..+++..+++.+ .++.++..++..++++++++.|++  +|+
T Consensus       217 ~~~~--~~~-~~~~~~~~--~~~~~~g------t~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~--~g~  282 (353)
T TIGR03235       217 KPKA--PLK-PIMFGGGQ--ERGLRPG------TLPVHLIVGMGEAAEIA-RRNAQAWEVKLRAMRNQLRDALQT--LGV  282 (353)
T ss_pred             cccc--ccC-ceeeCCCC--cCccccC------CCChHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc--CCe
Confidence            2111  111 22111110  0011111      1111 234444555543 357788889999999999999988  899


Q ss_pred             EEecCCc---eeEEEEE
Q psy12303        390 YLILEPE---MVNVSFW  403 (480)
Q Consensus       390 ~~~~~~~---~~~v~f~  403 (480)
                      +++.++.   ..+++|.
T Consensus       283 ~~~~~~~~~~~~i~~~~  299 (353)
T TIGR03235       283 KLNGDPAETIPHILNFS  299 (353)
T ss_pred             EEeCCcccccCCEEEEE
Confidence            9886543   2345553

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.96  E-value=9.4e-27  Score=228.19  Aligned_cols=343  Identities=14%  Similarity=0.132  Sum_probs=228.9

Q ss_pred             ccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCC--CeEECCChhHHHHHHHHHHHHhcCch
Q psy12303         79 LSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGG--DSILAPGGSISNLYAFLAARHKMFPT  156 (480)
Q Consensus        79 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~--~~~~t~ggt~a~~~al~~~~~~~~~~  156 (480)
                      .|+|..+...+.+.++...+.    |  .+...++...+++.+++++|+++.  .+++++|||+++..++..+..     
T Consensus         4 ~p~p~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~-----   72 (355)
T TIGR03301         4 TPGPLSTSATVRDAMLVDWCH----W--DSEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVP-----   72 (355)
T ss_pred             cCCCCCCCHHHHHHhhhhccC----C--CHHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccC-----
Confidence            456655555555555542222    2  223346677889999999999764  577899999999999877653     


Q ss_pred             hHhcCCCccCCceEEEecCCCchh-HHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCC
Q psy12303        157 YKEKGLSAIKGQLVMFTSDQCHYS-VRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTT  235 (480)
Q Consensus       157 ~~~~g~~~~~g~~~vl~~~~~h~s-~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~  235 (480)
                               +++.+++++...|.+ +..+++..|.   +++.++.++++.+|+++++++++++    ..+++|++++++|
T Consensus        73 ---------~~~~vi~~~~~~~~~~~~~~a~~~g~---~~~~i~~~~~~~~d~~~l~~~l~~~----~~~~~v~~~~~~~  136 (355)
T TIGR03301        73 ---------RDGKLLVLINGAYGERLAKICEYLGI---PHTDLNFSEYEPPDLNRIEEALAAD----PDITHVATVHHET  136 (355)
T ss_pred             ---------CCCeEEEECCCchhhHHHHHHHHcCC---ceEEEecCCCCCCCHHHHHHHHHhC----CCceEEEEEecCC
Confidence                     334466666666654 5567788887   7888998878899999999999753    2367888899999


Q ss_pred             ccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhh
Q psy12303        236 VLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISC  315 (480)
Q Consensus       236 ~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~  315 (480)
                      ++|.+.|+++|.++|++||+++++|++++.+..+.+...+       ++|+++.++|||+++|.|+|+++++++ .++..
T Consensus       137 ~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~-------~~d~~~~s~~K~l~~~~G~g~~~~~~~-~~~~~  208 (355)
T TIGR03301       137 TTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEEL-------DVDALIASANKCLEGVPGFGFVIARRD-LLEAS  208 (355)
T ss_pred             cccchhHHHHHHHHHHHcCCEEEEEeccccCCcccchhhc-------CccEEEecCCcccccCCceeEEEECHH-HHHHh
Confidence            9999999999999999999999999998877654443333       789999999999988888999987654 44443


Q ss_pred             hcCCcccccccccccCcccCCCCccccCCCC-CCchHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        316 NQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-NDIFKLWLQWRAKGDEG-FEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       316 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~~l~~~g~~~-~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                      .....++..............+.  ...+.. ....++..+++.+..++ +++..++.+++++++.+.|++ . |++++.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~--~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~-~-g~~~~~  284 (355)
T TIGR03301       209 AGNARSLYLDLYDQWAYMEKTGK--WRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRA-L-GFQPLL  284 (355)
T ss_pred             hCCCCCceeeHHHHHHHhhhcCC--CCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH-c-CCeeec
Confidence            32111221110000000000000  001111 12234445666655555 788889999999999999998 4 888755


Q ss_pred             CCc--eeE-EEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHH
Q psy12303        394 EPE--MVN-VSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLL  470 (480)
Q Consensus       394 ~~~--~~~-v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~  470 (480)
                      ++.  .+. +++.. |... ..         +  ..++.++|.++|++ +.+..... .+++|++ ++..++++|+++++
T Consensus       285 ~~~~~~~~~~~~~~-~~~~-~~---------~--~~~~~~~l~~~gi~-i~~~~~~~-~~~iRis-~~~~~~~~~i~~~~  348 (355)
T TIGR03301       285 PERWQSPIIVSFLY-PDDP-DF---------D--FDDFYQELKERGFV-IYPGKLTL-ADTFRIG-TIGEIDAADIERLL  348 (355)
T ss_pred             CCCCCCCcEEEEEC-CCCC-cc---------h--HHHHHHHHHHCCEE-EECCcccc-ccEEEEe-cCCCCCHHHHHHHH
Confidence            432  222 33332 2210 00         0  23577888888854 44332222 3689999 77778999999999


Q ss_pred             HHHHHh
Q psy12303        471 TEMDRL  476 (480)
Q Consensus       471 ~~l~~~  476 (480)
                      +.|+++
T Consensus       349 ~~l~~~  354 (355)
T TIGR03301       349 EAIKDA  354 (355)
T ss_pred             HHHHhh
Confidence            999875

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.96  E-value=1.4e-27  Score=254.02  Aligned_cols=367  Identities=13%  Similarity=0.052  Sum_probs=235.8

Q ss_pred             CCccccccCCCChHHhHHHHHHHHc---CcCCc-chhcChhhHHHHHHHHHHHHHHhCCCCC--CeEECCChhHHHHHHH
Q psy12303         73 PMFMNQLSCGLDVVSMAGEWLIATA---NTNMF-TYEIAPVFILMETVVLEKMRQIIGWQGG--DSILAPGGSISNLYAF  146 (480)
Q Consensus        73 p~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~-~~~~~~~~~~~e~~~~~~la~~~g~~~~--~~~~t~ggt~a~~~al  146 (480)
                      -.||++..+++.++..+.+.+..+.   ..|.+ .+..+...+++.+++++.+++++|+++.  .++||+|+|+|+..++
T Consensus        35 ~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva  114 (805)
T PLN02724         35 VVYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVG  114 (805)
T ss_pred             CEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHH
Confidence            4799999877766555555554332   12222 2233455566777889999999999654  5799999999988776


Q ss_pred             HHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCC--------CCCCCCH--HHHHHHHH
Q psy12303        147 LAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD--------KRGRLIP--SELERLVL  216 (480)
Q Consensus       147 ~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~--------~~~~~d~--~~L~~~i~  216 (480)
                      .....             .+|+ +|+++...|.|+......+...+.++..++++        ..+.+++  ++|++.++
T Consensus       115 ~~l~~-------------~~gd-~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~  180 (805)
T PLN02724        115 ETFPW-------------SSES-HFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNT  180 (805)
T ss_pred             HHCCC-------------CCCC-eEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhh
Confidence            54421             1445 77888899998775544332112278888876        3444544  56766643


Q ss_pred             HH----HHCCCccEEEEeccCCCccccccChHHHHHHHHHc--------CcEEEeeccccccccccccccCcccCCCCCC
Q psy12303        217 ER----KAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY--------NMWLHVDAAWGGGLLLSKKYRHPRLTGIERA  284 (480)
Q Consensus       217 ~~----~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~--------~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~  284 (480)
                      +.    ...+.++++|++++.+|.+|.+.|+++|.++++..        ++++++|+|++.+..+.+..++       ++
T Consensus       181 ~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~-------~~  253 (805)
T PLN02724        181 SKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRY-------PA  253 (805)
T ss_pred             hhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCChhhc-------CC
Confidence            11    11123478999999999999999999876655542        3579999999999998888777       89


Q ss_pred             ccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccccc-------cc-------CcccCCCCccccCCCCCCch
Q psy12303        285 DSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDK-------LY-------DVRYDTGDKVIQCGRHNDIF  350 (480)
Q Consensus       285 D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~-------~~~~~~~~~~~~~~r~~~~l  350 (480)
                      |++++|+|||+++|.|+|+++++++ .+...   .+.+..+...       .+       ...++.|+.++     ...+
T Consensus       254 Dfl~~S~HK~~GgP~G~G~L~vr~~-~~~~l---~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~-----~~i~  324 (805)
T PLN02724        254 DFVVVSFYKIFGYPTGLGALLVRRD-AAKLL---KKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISF-----LSIA  324 (805)
T ss_pred             CEEEEecceeccCCCCceEEEEehh-hhhhh---cCCccCCCceEEEecccceeeccccHHHHhcCCCcch-----hHHH
Confidence            9999999999999999999999865 33222   2222222110       00       11222222222     2455


Q ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC------CeEEecCC--------ceeEEEEEeecCccCCCchhh
Q psy12303        351 KLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD------KFYLILEP--------EMVNVSFWYLPTRVRNMPHEK  416 (480)
Q Consensus       351 ~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~------g~~~~~~~--------~~~~v~f~~~~~~~~~~~~~~  416 (480)
                      ++..+++.+..-+++++.++..+|++++.+.|.+ ++      +++++++.        ..+++.|.............+
T Consensus       325 ~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~-l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~  403 (805)
T PLN02724        325 ALRHGFKLLNRLTISAIAMHTWALTHYVANSLRN-LKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHRE  403 (805)
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHh-ccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHH
Confidence            6666777765567888889999999999999998 76      58888643        457888876532211111100


Q ss_pred             HHHHhhhhhHHHHHHHHhcccEEEeee----------------------------eeCCc-ccEEEEecccCCCCHHHHH
Q psy12303        417 RLNILGEITPILKGRMMQAGTMMVGYQ----------------------------PLNDL-PNFFRNIISSAAVTEGDID  467 (480)
Q Consensus       417 ~~~~l~~~~~~i~~~l~~~g~~~~~~~----------------------------~~~~~-~~~~R~~~~~~~~t~~di~  467 (480)
                      . ..+.    ...+.....|. ++.+.                            ...+. .+++|+| .++++|++|||
T Consensus       404 v-~~l~----~~~gI~vR~G~-~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS-~g~ynt~eDvd  476 (805)
T PLN02724        404 V-EKLA----SLSGIQLRTGC-FCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVS-FGYMSTFEDCQ  476 (805)
T ss_pred             H-HHHH----HhcCcEEeecc-ccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEE-cCccCCHHHHH
Confidence            0 0010    00111122221 11110                            00111 3799999 88999999999


Q ss_pred             HHHHHHHHhh
Q psy12303        468 FLLTEMDRLG  477 (480)
Q Consensus       468 ~~~~~l~~~~  477 (480)
                      ++++.|++..
T Consensus       477 ~lv~~l~~~~  486 (805)
T PLN02724        477 KFIDFIISSF  486 (805)
T ss_pred             HHHHHHHHHh
Confidence            9999999853

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.96  E-value=5.8e-26  Score=222.52  Aligned_cols=309  Identities=16%  Similarity=0.214  Sum_probs=210.4

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      ..++++.+++++|.  .++++++|+|+++..++.+...              ||+ .|+++..+|++...++...|+   
T Consensus        46 ~~~l~~~la~~~g~--~~i~~~~g~t~al~~~l~~~~~--------------~gd-~Vl~~~~~~~~~~~~~~~~g~---  105 (361)
T cd06452          46 IKDFHHDLAEFLGM--DEARVTPGAREGKFAVMHSLCE--------------KGD-WVVVDGLAHYTSYVAAERAGL---  105 (361)
T ss_pred             HHHHHHHHHHHcCC--ceEEEeCCHHHHHHHHHHHhcC--------------CCC-EEEEcCCcchHHHHHHHhcCC---
Confidence            44566779999999  4599999999999988877643              445 788888999999888888888   


Q ss_pred             CeEEeeCCCC--CCCCHHHHHHHHHHHHHC-CCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccc
Q psy12303        194 NCVEVPSDKR--GRLIPSELERLVLERKAK-GDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLS  270 (480)
Q Consensus       194 ~v~~v~~~~~--~~~d~~~L~~~i~~~~~~-~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~  270 (480)
                      +++.++.+.+  +.+|+++|++++++..+. +.++++|++++++|++|.+.|+++|.++|+++|+++|+|+||+.+..+.
T Consensus       106 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~  185 (361)
T cd06452         106 NVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPV  185 (361)
T ss_pred             EEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCC
Confidence            8889998765  489999999999764321 2348899999999999999999999999999999999999999776544


Q ss_pred             ccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC-CCc
Q psy12303        271 KKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-NDI  349 (480)
Q Consensus       271 ~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-~~~  349 (480)
                      +...+       ++|+++.|+||++++|.++|+++++ +...........++-...         ...  ...+.+ ..+
T Consensus       186 ~~~~~-------~~d~~~~s~~K~l~~~~~~G~l~~~-~~~~~~l~~~~~~~~~~~---------~~~--~~~~~~~~~~  246 (361)
T cd06452         186 SGKEL-------GADFIVGSGHKSMAASAPIGVLATT-EEWADIVFRTSQMFKIKE---------VEL--LGCTLRGAPL  246 (361)
T ss_pred             CHHHc-------CCCEEEecCCccccCCCCeEEEEEC-HHHHHHHhccccccccce---------eee--eccccCchHH
Confidence            44344       7899999999999988889988875 444444432222211000         000  001111 123


Q ss_pred             hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC--CceeEEEEEeecCccCCCchhhHHHHhhhhhHH
Q psy12303        350 FKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE--PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPI  427 (480)
Q Consensus       350 l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~--~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~  427 (480)
                      ..++.++..+ .+.+ +..++..++++++.+.|++ ++|++++.+  ...+.+.+.. + .+..     .......-..+
T Consensus       247 ~~~~~al~~~-~~~~-~~~~~~~~~~~~l~~~L~~-l~g~~v~~~~~~~~n~~~~~~-~-~~~~-----~~~~~~~~~~~  316 (361)
T cd06452         247 VTLMASFPHV-KERV-KRWDEEVEKARWFVAELEK-IEGIKQLGEKPKNHDLMFFET-P-SFDE-----IAKKHKRRGYF  316 (361)
T ss_pred             HHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHhc-CCCeEEECCCCCCCceEEEEc-C-Ccch-----hhhhccccchh
Confidence            3444444432 2333 3445556677999999999 889998742  2233343432 1 1100     00000000125


Q ss_pred             HHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        428 LKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       428 i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      +.+.|.++|+.. .   ..+...++|+++  ...+++|++.++++|+++.
T Consensus       317 ~~~~L~~~gI~~-~---~~~~~~~~ri~~--~g~~~e~~~~l~~al~~~~  360 (361)
T cd06452         317 LYSELKKRGIHG-I---KPGLTRYFKLST--YGLTWEQVEYVVDAFKEIA  360 (361)
T ss_pred             HHHHHHHcCceE-E---cCCCceEEEEEe--cCCCHHHHHHHHHHHHHHh
Confidence            778888888652 1   123245899883  3469999999999998764

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.96  E-value=4.1e-26  Score=224.46  Aligned_cols=322  Identities=16%  Similarity=0.116  Sum_probs=218.9

Q ss_pred             hhhHHHHHHHHHHHHHHhCCCC--CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhH--HH
Q psy12303        108 PVFILMETVVLEKMRQIIGWQG--GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV--RS  183 (480)
Q Consensus       108 ~~~~~~e~~~~~~la~~~g~~~--~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~--~~  183 (480)
                      +.+.+...++++.+++++|.++  ..+++++|||+++..++..+..              +|+.+++.+ ..++..  ..
T Consensus        33 ~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~--------------~~~~vlv~~-~~~~~~~~~~   97 (368)
T PRK13479         33 DDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVP--------------RDGKVLVPD-NGAYGARIAQ   97 (368)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccC--------------CCCeEEEEe-CCchHHHHHH
Confidence            4445677889999999999964  3477999999999999887753              335344444 444443  46


Q ss_pred             HHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccc
Q psy12303        184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       184 ~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                      .++..|+   +++.+|.++++.+|++++++++++.    ..+++|.+++++|++|.+.|+++|.++|+++|+++++|+++
T Consensus        98 ~~~~~g~---~~~~i~~~~~~~~d~~~l~~~l~~~----~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~  170 (368)
T PRK13479         98 IAEYLGI---AHVVLDTGEDEPPDAAEVEAALAAD----PRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMS  170 (368)
T ss_pred             HHHHcCC---cEEEEECCCCCCCCHHHHHHHHHhC----CCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEccc
Confidence            7777787   8889999877889999999998753    12568899999999999999999999999999999999998


Q ss_pred             cccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccC
Q psy12303        264 GGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQC  343 (480)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  343 (480)
                      +.+..+.+...+       ++|++++++|||+++|.|+|+++++++ .+........+|..............+.+.+  
T Consensus       171 ~~g~~~~~~~~~-------~~d~~v~s~~K~l~g~~G~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  240 (368)
T PRK13479        171 SFGAIPIDIAEL-------GIDALISSANKCIEGVPGFGFVIARRS-ELEACKGNSRSLSLDLYDQWAYMEKTGQWRF--  240 (368)
T ss_pred             ccCCcccccccc-------CceEEEecCccccccCCCceEEEECHH-HHHHhhcCCCCeeecHHHHHhhhcccCCCCC--
Confidence            877655544444       789999999999998999999998654 4443332222221110000000000011100  


Q ss_pred             CCC-CCchHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc--e-eEEEEEeecCccCCCchhhHH
Q psy12303        344 GRH-NDIFKLWLQWRAKGDE-GFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE--M-VNVSFWYLPTRVRNMPHEKRL  418 (480)
Q Consensus       344 ~r~-~~~l~~~~~l~~~g~~-~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~--~-~~v~f~~~~~~~~~~~~~~~~  418 (480)
                      +.. ....++..++..+..+ ++++.+++..++++++.+.|++ . |++++.++.  . ..++|......  +.+     
T Consensus       241 t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~--~~~-----  311 (368)
T PRK13479        241 TPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRA-L-GFEPLLDAEIQSPIIVTFHAPADP--AYD-----  311 (368)
T ss_pred             CCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH-c-CCcccCCchhcCceEEEEECCCCC--CcC-----
Confidence            111 1234455566555333 4788889999999999999999 4 888764432  2 23445432111  000     


Q ss_pred             HHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        419 NILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       419 ~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                            ..++.+.|.++|+++ .+..... .+++|++ ...++|++|++++++.|++++++
T Consensus       312 ------~~~l~~~L~~~gi~v-~~g~~~~-~~~iRis-~~~~~t~edi~~~l~~L~~~l~~  363 (368)
T PRK13479        312 ------FKEFYERLKEQGFVI-YPGKLTQ-VDTFRIG-CIGDVDAADIRRLVAAIAEALYW  363 (368)
T ss_pred             ------HHHHHHHHHHCCEEE-ecCCCCC-CCEEEEe-cCCCCCHHHHHHHHHHHHHHHHH
Confidence                  245778888888544 3322222 3589998 55678999999999999988765

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.96  E-value=3.4e-26  Score=216.16  Aligned_cols=340  Identities=18%  Similarity=0.138  Sum_probs=248.6

Q ss_pred             HHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCC-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCce
Q psy12303         91 EWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQG-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQL  169 (480)
Q Consensus        91 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~  169 (480)
                      +.+.+...+....  .+|.+..+..++.+.+..+|+.+. .-.+++++||.|+..++..+.+              ||+.
T Consensus        19 ~V~~am~~~~~~h--~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~--------------pgdk   82 (383)
T COG0075          19 RVLLAMARPMVGH--RSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVE--------------PGDK   82 (383)
T ss_pred             HHHHHhcCCCCCC--CCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccC--------------CCCe
Confidence            3344444444443  378889999999999999999985 5566889999988888877765              5564


Q ss_pred             EEEecCCCch-hHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHH
Q psy12303        170 VMFTSDQCHY-SVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIAD  248 (480)
Q Consensus       170 ~vl~~~~~h~-s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~  248 (480)
                      ++++....+. -+...++.+|.   +++.+.....-.+|+++++++|+++    ...++|.++|..|+||...|+++|++
T Consensus        83 VLv~~nG~FG~R~~~ia~~~g~---~v~~~~~~wg~~v~p~~v~~~L~~~----~~~~~V~~vH~ETSTGvlnpl~~I~~  155 (383)
T COG0075          83 VLVVVNGKFGERFAEIAERYGA---EVVVLEVEWGEAVDPEEVEEALDKD----PDIKAVAVVHNETSTGVLNPLKEIAK  155 (383)
T ss_pred             EEEEeCChHHHHHHHHHHHhCC---ceEEEeCCCCCCCCHHHHHHHHhcC----CCccEEEEEeccCcccccCcHHHHHH
Confidence            5555444433 37778888888   8888888877789999999999854    33779999999999999999999999


Q ss_pred             HHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccccc
Q psy12303        249 ICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDK  328 (480)
Q Consensus       249 i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  328 (480)
                      +||+||..++||++-+.|....+...|       ++|++...++|.+++|+|.|++.++++.+-.......++|+..-..
T Consensus       156 ~~k~~g~l~iVDaVsS~Gg~~~~vd~w-------giDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~  228 (383)
T COG0075         156 AAKEHGALLIVDAVSSLGGEPLKVDEW-------GIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKK  228 (383)
T ss_pred             HHHHcCCEEEEEecccCCCcccchhhc-------CccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHH
Confidence            999999999999999999998888888       9999999999999999999999998765433222222323322111


Q ss_pred             ccCcccCCCCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC--ceeEEEEEee
Q psy12303        329 LYDVRYDTGDKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP--EMVNVSFWYL  405 (480)
Q Consensus       329 ~~~~~~~~~~~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~--~~~~v~f~~~  405 (480)
                      . ...++-. ..++.+-+. ...++-.+++.+-.+|++++++|++.+++.+++.+++  .|++++.++  .+.+++..+.
T Consensus       229 ~-~~~~~~~-~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~a--lGl~~~~~~~~~s~tvta~~~  304 (383)
T COG0075         229 W-LKYMEKK-GSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEA--LGLELFADPERRSPTVTAIKV  304 (383)
T ss_pred             H-HHHHhhc-CCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--cCCccccCcccCCCceEEEEC
Confidence            1 0011000 111122222 3345666777778899999999999999999999999  799998743  2445555566


Q ss_pred             cCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        406 PTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       406 ~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      |..+++              +++...+.+++.+.+..+...-...++||..+. +.+..|+..++.+|+..+++
T Consensus       305 P~g~~~--------------~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG-~~~~~dv~~~l~ale~~L~~  363 (383)
T COG0075         305 PEGVDD--------------KKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMG-NVRPEDVLAALAALEAALRE  363 (383)
T ss_pred             CCCCCc--------------HHHHHHHHHhCCEEecccccccCccEEEEecCc-cCCHHHHHHHHHHHHHHHHH
Confidence            665432              233346666655666543322224699999666 88999999999999988765

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.96  E-value=7.6e-26  Score=221.02  Aligned_cols=331  Identities=15%  Similarity=0.150  Sum_probs=239.1

Q ss_pred             ChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CC-CCeEECCChhHHHHHHHHHHHHhcCchhHhc
Q psy12303         84 DVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QG-GDSILAPGGSISNLYAFLAARHKMFPTYKEK  160 (480)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~  160 (480)
                      .|..+...+..+..+.+. .|....+..++.+.+.+++.+.+|.  ++ .++++|+|+++|+..++.+..+         
T Consensus        42 ~p~~i~~a~~~a~~~~~~-~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~~---------  111 (393)
T COG0436          42 TPEHIIEAAIEALEEGGT-HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLN---------  111 (393)
T ss_pred             CCHHHHHHHHHHHhcccC-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhcC---------
Confidence            344444344444443332 4557788899999999999999884  44 4499999999999999999877         


Q ss_pred             CCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCC---CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcc
Q psy12303        161 GLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD---KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVL  237 (480)
Q Consensus       161 g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~---~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~  237 (480)
                           ||| .|+++++.++++.....++|.   +++.++++   .++.+|+++|+++++++      |++|++++|+|||
T Consensus       112 -----pGD-eVlip~P~Y~~y~~~~~~~gg---~~v~v~l~~~~~~f~~d~~~l~~~i~~k------tk~i~ln~P~NPT  176 (393)
T COG0436         112 -----PGD-EVLIPDPGYPSYEAAVKLAGG---KPVPVPLDEEENGFKPDLEDLEAAITPK------TKAIILNSPNNPT  176 (393)
T ss_pred             -----CCC-EEEEeCCCCcCHHHHHHhcCC---EEEEEeCCcCccCCcCCHHHHHhhcCcc------ceEEEEeCCCCCc
Confidence                 667 799999999999999999998   78889875   37999999999999986      9999999999999


Q ss_pred             ccccC---hHHHHHHHHHcCcEEEeeccccccccccccccCccc--CCCCCCccceeCccccCCCc-ccceEEEEeCchh
Q psy12303        238 GAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRL--TGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGL  311 (480)
Q Consensus       238 G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~--~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~  311 (480)
                      |++.+   +++|+++|++||+|++.|++|....+....... .+  .+....-+..-|++|.++.+ +.+|+++..++.+
T Consensus       177 Gav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s-~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l  255 (393)
T COG0436         177 GAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPS-ILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEEL  255 (393)
T ss_pred             CcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCC-HhhcCCCcceEEEEecccccccccccceeEeecChHHH
Confidence            99965   899999999999999999999987764321111 11  11111224445889999854 7899999775655


Q ss_pred             hHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhc----HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12303        312 LISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG----DEGFEKQIDRLMELAEYMVKKIKSMPD  387 (480)
Q Consensus       312 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g----~~~~~~~~~~~~~l~~~l~~~l~~~~~  387 (480)
                      ...... ...++..                 |   ...+...++...+.    .+..+.+.+...+.++.+.+.|.+ .+
T Consensus       256 ~~~~~~-~~~~~~~-----------------~---~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~-~~  313 (393)
T COG0436         256 IAALRK-LKSYLTS-----------------C---APTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNE-IG  313 (393)
T ss_pred             HHHHHH-HHHhccc-----------------C---CCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence            544331 1111110                 1   12233333443332    245677778899999999999999 88


Q ss_pred             CeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCc---ccEEEEecccCCCCHH
Q psy12303        388 KFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDL---PNFFRNIISSAAVTEG  464 (480)
Q Consensus       388 g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~---~~~~R~~~~~~~~t~~  464 (480)
                      |+.+..+|..+.+.|...+...+              ..++...|.++..+++.++...+.   .+++|+++.   .+.+
T Consensus       314 g~~~~~~p~Ga~Y~~~~i~~~~d--------------~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~---~~~~  376 (393)
T COG0436         314 GLSVVKPPEGAFYLFPKIPELLD--------------SEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLA---TSEE  376 (393)
T ss_pred             CeeeccCCCeeEEEEeecCCCCC--------------HHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEe---cCHH
Confidence            89997668898888865554311              235667777776666666555543   379999943   4569


Q ss_pred             HHHHHHHHHHHhhcc
Q psy12303        465 DIDFLLTEMDRLGHD  479 (480)
Q Consensus       465 di~~~~~~l~~~~~~  479 (480)
                      ++++.++++.+..+.
T Consensus       377 ~l~~a~~rl~~~~~~  391 (393)
T COG0436         377 TLEEALRRLARFLAE  391 (393)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999987754

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.95  E-value=5e-26  Score=235.28  Aligned_cols=384  Identities=13%  Similarity=0.071  Sum_probs=257.6

Q ss_pred             CCCCHHHHHHHHHhhccCCccCCC-CCcccc-----ccCCCChHHhHHHHHHHHcCcCCcch-hcChhhHHHHHHHHHHH
Q psy12303         49 KGLPLQKLIDDCFTTLKYQVRTGH-PMFMNQ-----LSCGLDVVSMAGEWLIATANTNMFTY-EIAPVFILMETVVLEKM  121 (480)
Q Consensus        49 ~~~~~~~i~~~~~~~~~~~~~~~~-p~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~e~~~~~~l  121 (480)
                      .+.+.-++++.++++-..+....+ ..|++-     .+.....++...++    .+..++.. +.+.+..++-.++.+++
T Consensus       477 ~~~SE~el~r~~~~La~kn~~~~~~~~~LGsCTmK~n~~~~~~p~s~~eF----~t~hPyqp~e~sQG~lq~i~elq~~l  552 (954)
T PRK12566        477 AHHSETEMLRYLKQLENKDLALNQSMIPLGSCTMKLNATSEMIPITWPEF----AQLHPFAPREQAEGYRAMIDELEAWL  552 (954)
T ss_pred             cCCCHHHHHHHHHHHHhcCcCcccCcccCcccccCcCcHHhhhcccchhh----hcCCCCCchhhhcCHHHHHHHHHHHH
Confidence            356888999999888776654332 233332     11111111111233    33344444 56788888888899999


Q ss_pred             HHHhCCCCCCeEECC-ChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeC
Q psy12303        122 RQIIGWQGGDSILAP-GGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPS  200 (480)
Q Consensus       122 a~~~g~~~~~~~~t~-ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~  200 (480)
                      ++++|++.  +.+.+ +|+.+++.++++.|..    ...+|.   +++.+|+++...|.+....+...|+   +++.+|+
T Consensus       553 ~eLtGmd~--~Sl~p~sGA~gE~A~Lmair~y----h~~~Ge---~~r~~vLIp~saHgtNpasa~~~Gi---eVv~Vp~  620 (954)
T PRK12566        553 CAITGFDA--ICMQPNSGAQGEYAGLLAIRRY----HRSRGQ---SQRDICLIPSSAHGTNPASAQMAGM---RVVIVEC  620 (954)
T ss_pred             HHHHCCCe--EeecCCchHHHHHHHHHHHHHH----HHhcCC---CCCCEEEecccccccCHHHHHHCCC---EEEEecc
Confidence            99999987  46666 7778888888887753    122343   3345899999999887777888888   8999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccc-cccCcccC
Q psy12303        201 DKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSK-KYRHPRLT  279 (480)
Q Consensus       201 ~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~-~~~~~~~~  279 (480)
                      |++|.+|+++|++++++..   .++++|.++++++..+..+|+++|+++|+++|+++++|+|+..+....+ ....    
T Consensus       621 D~~G~iDle~L~a~I~~~~---~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~~----  693 (954)
T PRK12566        621 DPDGNVDLDDLKAKAAAAG---DRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPADI----  693 (954)
T ss_pred             CCCCCcCHHHHHHHhhccC---CCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhhc----
Confidence            9999999999999997321   2389999999987776667899999999999999999999986555443 2344    


Q ss_pred             CCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccccc-c-cCcccCCCCccccCCCC-CCchHHHHHH
Q psy12303        280 GIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDK-L-YDVRYDTGDKVIQCGRH-NDIFKLWLQW  356 (480)
Q Consensus       280 ~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~~~~~~~~r~-~~~l~~~~~l  356 (480)
                         ++|++++++|||+++|.|.|+.+++.-......    .+++.+... . .+.....+..+..|.-. ..++.+|..+
T Consensus       694 ---GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L----~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi  766 (954)
T PRK12566        694 ---GADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHL----APFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYI  766 (954)
T ss_pred             ---CCCEEEecCCcccCcCccCCCCccchhhhhhhh----hhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHH
Confidence               999999999999999999999888763322211    122221110 0 00000112111111111 1356788888


Q ss_pred             HHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC---CceeEEEEEeecCc-cCCCchhhHHHHhhhhhHHHHHHH
Q psy12303        357 RAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE---PEMVNVSFWYLPTR-VRNMPHEKRLNILGEITPILKGRM  432 (480)
Q Consensus       357 ~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~---~~~~~v~f~~~~~~-~~~~~~~~~~~~l~~~~~~i~~~l  432 (480)
                      ..+|.+ +.+.......+++|+.+.|.+ ..++.. .+   +....+.+...+.. ..+.+           ..++.++|
T Consensus       767 ~~lG~e-Lk~aa~~ailnAnYla~rL~~-~~~v~~-~~~~~~~~hEfii~~~~l~~~~g~~-----------~~dvakRL  832 (954)
T PRK12566        767 AMMGPQ-LADASEVAILSANYLANQLGG-AFPVLY-RGRNERVAHECILDLRPLKAQTGIS-----------EEDVAKRL  832 (954)
T ss_pred             HHHCHH-HHHHHHHHHHHHHHHHHHhHh-hCCCCc-CCCCCCeeeEEEEEccccccccCCC-----------HHHHHHHH
Confidence            889998 887778788999999999988 555444 22   21233333322111 00110           24678888


Q ss_pred             HhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        433 MQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       433 ~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+.|..... ..+.. .+.+|++ ++..++++|||+++++|+.+.++
T Consensus       833 ~d~Gihapt-~~fPv-~~~LmIe-pTE~eskeEIDrf~eAL~~I~~e  876 (954)
T PRK12566        833 MDYGFHAPT-MSFPV-PGTLMVE-PTESESKAELDRFVEAMLSIRAE  876 (954)
T ss_pred             HHCCcEEeE-Eeecc-CCEEEEE-eeeeCCHHHHHHHHHHHHHHHHH
Confidence            887754332 23444 6799999 99999999999999999988765

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.95  E-value=5.3e-25  Score=215.98  Aligned_cols=311  Identities=15%  Similarity=0.211  Sum_probs=209.5

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      ..++++.+++++|.++  +.+++|+++++..++.+...              ||+ .|+++...|++...+++..|.   
T Consensus        53 ~~~~~e~lA~~~g~~~--~~i~~g~~~a~~~~~~~l~~--------------~gd-~Vl~~~~~h~s~~~~~~~~g~---  112 (370)
T TIGR02539        53 IHDFLEDLAEFLGMDE--ARVTHGAREGKFAVMHALCK--------------EGD-WVVLDGLAHYTSYVAAERAGL---  112 (370)
T ss_pred             HHHHHHHHHHHhCCCc--eEEECChHHHHHHHHHHhhC--------------CCC-EEEECCcccHHHHHHHHHcCC---
Confidence            3455677999999976  77899999999988887753              445 788888999999888888887   


Q ss_pred             CeEEeeCCC--CCCCCHHHHHHHHHHHHHC-CCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccc
Q psy12303        194 NCVEVPSDK--RGRLIPSELERLVLERKAK-GDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLS  270 (480)
Q Consensus       194 ~v~~v~~~~--~~~~d~~~L~~~i~~~~~~-~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~  270 (480)
                      +++.+|.+.  ++.+|+++|++++++.... +..+++|+++++++++|.+.|+++|.++|+++|+++++|+||+.+.+..
T Consensus       113 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~  192 (370)
T TIGR02539       113 NVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPV  192 (370)
T ss_pred             EEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCC
Confidence            888898863  5889999999999764321 2347899999999999999999999999999999999999999875433


Q ss_pred             ccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC-CCc
Q psy12303        271 KKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-NDI  349 (480)
Q Consensus       271 ~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-~~~  349 (480)
                      +....       ++|+++.++||+++++.++|+++.+ +..++.......+|......           .+..+.. ..+
T Consensus       193 ~~~~~-------~~di~v~s~sK~~~~~g~~G~l~~~-~~~i~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~  253 (370)
T TIGR02539       193 SAKEI-------GADFIVGSGHKSMAASGPCGVLGMS-EEWEDIVLRKSRYSPVKEVE-----------LLGCTSRGAPI  253 (370)
T ss_pred             CHHHc-------CCCEEEeeCcccccCCCCEEEEEEC-HHHHhhhcccccCCccceee-----------eecccccccHH
Confidence            33223       6899999999999977778888865 45555444333333221100           0001111 122


Q ss_pred             hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec--CCceeEEEEEeecCccCCCchhhHHHHhhhhhHH
Q psy12303        350 FKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPI  427 (480)
Q Consensus       350 l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~--~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~  427 (480)
                      ..++.++... .+.+. ..++..++++++++.|++  .|++++.  ++..+.+.+.. |. ...    .... -......
T Consensus       254 ~~~~~al~~~-~~~l~-~~~~~~~~~~~l~~~L~~--~g~~~~~~~~s~t~~v~~~~-~~-~~~----~~~~-~~~~~~~  322 (370)
T TIGR02539       254 VTMMASFPHV-VERVK-RWDEEVKKTRWFVAELED--IGFIQLGQKPKEHDLVKFET-PG-FHE----IAQK-HKRRGYF  322 (370)
T ss_pred             HHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHh--CCcEEEccCCCcCceEEEEC-Cc-hhH----Hhhh-hccccHH
Confidence            3333333221 22222 234445667899999999  5888753  34444444432 21 100    0000 0001235


Q ss_pred             HHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        428 LKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       428 i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      +.++|.++|+..+.+    +..+++|+++ + ..|++|++++++.|+++++++
T Consensus       323 ~~~~L~e~GI~~ir~----~~~~~iRis~-~-~~t~e~i~~l~~~L~~~~~~~  369 (370)
T TIGR02539       323 LYEELKKRGIHGIRS----GQTKYFKLSV-Y-GLTKEQVEYVVDSFEEIVEEY  369 (370)
T ss_pred             HHHHHHhCCCccccC----CcceEEEEEe-c-CCCHHHHHHHHHHHHHHHHhc
Confidence            778888898642332    2246999994 3 569999999999999987653

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.95  E-value=1.4e-25  Score=224.93  Aligned_cols=313  Identities=15%  Similarity=0.138  Sum_probs=210.0

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEEC---CChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILA---PGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR  182 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t---~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~  182 (480)
                      .......+|+..++.++++||+++++..++   +|||+||..++.+..+              ||+ .|+++...|.++.
T Consensus        74 g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~~--------------~gd-~Ii~~~~ehg~~l  138 (452)
T PTZ00094         74 GNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQ--------------PHD-RIMGLDLPSGGHL  138 (452)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhcC--------------CCC-EEEecccccCCcc
Confidence            334456788778999999999987666566   7999999998888743              445 8888999998876


Q ss_pred             HHHHHcC-----CCC--CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCc
Q psy12303        183 SCAAVCG-----LGT--DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNM  255 (480)
Q Consensus       183 ~~~~~~g-----~~~--~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~  255 (480)
                      ..+..+.     ...  ..+..++++.+|.+|+++|++++++.     +|++|+++  .+.+|...|+++|.++|+++|+
T Consensus       139 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~-----~~~lvi~~--~s~~g~~~di~~I~~i~~~~ga  211 (452)
T PTZ00094        139 THGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAF-----RPKLIIAG--ASAYPRDIDYKRFREICDSVGA  211 (452)
T ss_pred             cccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHh-----CCCEEEEe--CCCCCCccCHHHHHHHHHHcCC
Confidence            5543221     000  13445667777999999999999753     16666653  3569999999999999999999


Q ss_pred             EEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccC
Q psy12303        256 WLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYD  335 (480)
Q Consensus       256 ~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  335 (480)
                      ++|||++|+.|.+..+.... .   +.++|++++++|||+++|.| |++++++. .............+.          
T Consensus       212 ~l~vDaaq~~G~i~~~~~~~-~---~~~~D~l~~S~hK~l~GP~G-g~l~~~~~-~~~~l~~~~~~~~~p----------  275 (452)
T PTZ00094        212 YLMADIAHTSGLVAAGVLPS-P---FPYADVVTTTTHKSLRGPRS-GLIFYRKK-VKPDIENKINEAVFP----------  275 (452)
T ss_pred             EEEEeccchhccccCCCCCC-C---CCCCcEEEcCCccCCCCCCc-eEEEEecc-cchHHHHhhccccCC----------
Confidence            99999999999987654333 1   22789999999999999997 77777654 222111100001100          


Q ss_pred             CCCccccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc-eeEEEEEeecCccCCCc
Q psy12303        336 TGDKVIQCGRH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE-MVNVSFWYLPTRVRNMP  413 (480)
Q Consensus       336 ~~~~~~~~~r~-~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~-~~~v~f~~~~~~~~~~~  413 (480)
                          .++++-. ....++..+++.+...+++++.++..+++++|.+.|.+  .|+++..+.. ...+.+.+......   
T Consensus       276 ----~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~--~g~~v~~~~~~~~~~~v~~~~~~~~---  346 (452)
T PTZ00094        276 ----GLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEK--RGYDLVTGGTDNHLVLVDLRPFGIT---  346 (452)
T ss_pred             ----CCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHh--CCcEEecCCCCCceEeecCCcCCCC---
Confidence                0011111 23445566666664556778889999999999999998  4888875321 12222222111111   


Q ss_pred             hhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCC-----cccEEEEecccCCCC----HHHHHHHHHHHHHhhc
Q psy12303        414 HEKRLNILGEITPILKGRMMQAGTMMVGYQPLND-----LPNFFRNIISSAAVT----EGDIDFLLTEMDRLGH  478 (480)
Q Consensus       414 ~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~-----~~~~~R~~~~~~~~t----~~di~~~~~~l~~~~~  478 (480)
                                 ...+...|.+.|+ +++......     ..+.+|++ ++.++|    ++||+++++.|.++++
T Consensus       347 -----------~~~~~~~L~~~gI-~vs~~~~p~~~~~~~~~~vRis-~~~~tt~g~~~~di~~l~~~l~~~~~  407 (452)
T PTZ00094        347 -----------GSKMEKLLDAVNI-SVNKNTIPGDKSALNPSGVRLG-TPALTTRGAKEKDFKFVADFLDRAVK  407 (452)
T ss_pred             -----------HHHHHHHHHHCCc-EEecccCCCCCcCCCCCeEEEC-CHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence                       2345566656674 443211111     14689999 777776    9999999999998765

>PLN02721 threonine aldolase

Probab=99.94  E-value=2.4e-24  Score=210.93  Aligned_cols=302  Identities=13%  Similarity=0.167  Sum_probs=196.2

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHH---HHHHcCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS---CAAVCGLG  191 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~---~~~~~g~~  191 (480)
                      .++++.+++++|.+.  ++++++||+++..++.+....             ||+ .|++++.+|+++.+   .+...|. 
T Consensus        43 ~~l~~~la~~~~~~~--~~~~~~Gs~a~~~~l~~~~~~-------------~gd-~Vl~~~~~~~~~~~~~~~~~~~g~-  105 (353)
T PLN02721         43 LRLEEEMAKIFGKEA--ALFVPSGTMGNLISVLVHCDV-------------RGS-EVILGDNSHIHLYENGGISTLGGV-  105 (353)
T ss_pred             HHHHHHHHHHhCCce--eEEecCccHHHHHHHHHHccC-------------CCC-eEEEcCccceehhcccchhhhcCc-
Confidence            345566888888865  788888999988787765432             445 78889999987776   4555666 


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCC-CccEEEEeccC-CCccccccC---hHHHHHHHHHcCcEEEeecccccc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKG-DIPFFVNCTSG-TTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGG  266 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~-~~~~~v~~~~~-~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~  266 (480)
                        +++.+|.++++.+|++++++++++....+ .++++|+++++ ++++|.+.|   +++|.++|+++|+++|+|++|..+
T Consensus       106 --~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~  183 (353)
T PLN02721        106 --HPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFN  183 (353)
T ss_pred             --eeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhc
Confidence              78889988889999999999997431111 24888988775 566888755   789999999999999999998654


Q ss_pred             ccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC
Q psy12303        267 LLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH  346 (480)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~  346 (480)
                      ........  .....+++|++++++||++++|.  |++++.++++..........+ ..                  +..
T Consensus       184 ~~~~~~~~--~~~~~~~~d~~~~s~sK~l~~~~--G~~~~~~~~~~~~~~~~~~~~-~~------------------~~~  240 (353)
T PLN02721        184 ASVALGVP--VHRLVKAADSVSVCLSKGLGAPV--GSVIVGSKSFIRKAKRLRKTL-GG------------------GMR  240 (353)
T ss_pred             chhhhCCC--HHHHhhhCCEEEEecccccCCce--eeEEecCHHHHHhHHHHHHhc-CC------------------Cee
Confidence            32111111  11112368999999999998753  444555666554322111100 00                  000


Q ss_pred             CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEE-ecCCceeEEEEEeecCccCCCchhhHHHHhhhhh
Q psy12303        347 NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYL-ILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEIT  425 (480)
Q Consensus       347 ~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~-~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~  425 (480)
                      ........++..  .+...+.+++..++++++.+.|++ ++++++ +.++..+.+.++... .. +.           ..
T Consensus       241 ~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~-~~-~~-----------~~  304 (353)
T PLN02721        241 QVGVLAAAALVA--LQENVPKLEDDHKKAKLLAEGLNQ-IKGLRVNVAAVETNIVYFDITD-GS-RI-----------TA  304 (353)
T ss_pred             hhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh-CCCcEEecCCccceEEEEEccC-Cc-cc-----------cH
Confidence            001111112222  122233345556788999999999 788865 556666655554321 10 00           02


Q ss_pred             HHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        426 PILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       426 ~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      ..+.++|.+.|+.+...    + .+++|++ +++.++++||++++++|++++..|
T Consensus       305 ~~~~~~L~~~gi~v~~~----~-~~~lR~~-~~~~~~~~~i~~~~~~l~~~~~~~  353 (353)
T PLN02721        305 EKLCKSLEEHGVLLMPG----N-SSRIRVV-THHQISDSDVQYTLSCFQQAALTL  353 (353)
T ss_pred             HHHHHHHHhCCcEEecC----C-CceEEEE-ecCcCCHHHHHHHHHHHHHHhhcC
Confidence            46778888888554432    2 4699999 778899999999999999887653

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.94  E-value=1.2e-23  Score=193.09  Aligned_cols=327  Identities=13%  Similarity=0.096  Sum_probs=238.8

Q ss_pred             HHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC
Q psy12303         90 GEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG  167 (480)
Q Consensus        90 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g  167 (480)
                      .+.+...++...++|.  -...++-.++.+|.++..++  ++..++|++|---++..++++...              ||
T Consensus        44 ~~Al~~rvdhGvfGY~--~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~--------------~g  107 (388)
T COG1168          44 IEALRERVDHGVFGYP--YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTK--------------PG  107 (388)
T ss_pred             HHHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhCc--------------CC
Confidence            3778888887777775  33356888999999999988  457899999999999999988765              66


Q ss_pred             ceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCC-C--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccc---c
Q psy12303        168 QLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD-K--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAF---D  241 (480)
Q Consensus       168 ~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~-~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~---~  241 (480)
                      + .|++..+.|+.+.++...-|.   +++..|.- +  .+.||.++||+++.+..     ++++++|+|+||+|.+   +
T Consensus       108 d-~Vvi~tPvY~PF~~~i~~n~R---~~i~~pL~~~~~~y~iD~~~LE~~~~~~~-----vkl~iLCnPHNP~Grvwt~e  178 (388)
T COG1168         108 D-GVVIQTPVYPPFYNAIKLNGR---KVIENPLVEDDGRYEIDFDALEKAFVDER-----VKLFILCNPHNPTGRVWTKE  178 (388)
T ss_pred             C-eeEecCCCchHHHHHHhhcCc---EEEeccccccCCcEEecHHHHHHHHhcCC-----ccEEEEeCCCCCCCccccHH
Confidence            7 667777888889999998887   78888764 3  35779999999998752     6899999999999988   6


Q ss_pred             ChHHHHHHHHHcCcEEEeeccccccccccccccCc--ccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcC
Q psy12303        242 PIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHP--RLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQM  318 (480)
Q Consensus       242 ~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~  318 (480)
                      .|.+|.+||++||+.++.|+.|+-..+....+-..  .-.....--+.+.++.|.++.+ ..|+.+++.++.+.......
T Consensus       179 eL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~  258 (388)
T COG1168         179 ELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKR  258 (388)
T ss_pred             HHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHH
Confidence            79999999999999999999999877654321110  1112223345677889999876 67899998888754332111


Q ss_pred             CcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc
Q psy12303        319 SAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE  396 (480)
Q Consensus       319 ~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~  396 (480)
                      .. ....                   ...+++++-+...++  |..++.++.+...++.+++.+.+.+++|++++. .|+
T Consensus       259 l~-~~~~-------------------~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~-~p~  317 (388)
T COG1168         259 LK-RNGL-------------------HGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKVT-EPQ  317 (388)
T ss_pred             HH-HhcC-------------------CCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEe-cCC
Confidence            10 0000                   012444544444444  899999999999999999999999978999985 666


Q ss_pred             eeEEEEE-eecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCc--ccEEEEecccCCCCHHHHHHHHHHH
Q psy12303        397 MVNVSFW-YLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDL--PNFFRNIISSAAVTEGDIDFLLTEM  473 (480)
Q Consensus       397 ~~~v~f~-~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~--~~~~R~~~~~~~~t~~di~~~~~~l  473 (480)
                      +.-..|. +.+-.+.              ..++.+.+.+++.+.+..+...|.  .+++|+.   ..++++-+++.+++|
T Consensus       318 gTYL~WLD~r~l~l~--------------d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN---~acpr~~L~eal~ri  380 (388)
T COG1168         318 GTYLAWLDCRELGLD--------------DSELAEFLLEEAKVALSPGSTFGEEGSGFVRLN---FACPRAILEEALERL  380 (388)
T ss_pred             CceeeeeeccccCCC--------------hHHHHHHHHHhhcEeccCCCccCcCCCceEEEe---cCCCHHHHHHHHHHH
Confidence            6555443 2222211              135667777888888877655543  6899977   556788888889888


Q ss_pred             HHhhcc
Q psy12303        474 DRLGHD  479 (480)
Q Consensus       474 ~~~~~~  479 (480)
                      +..+++
T Consensus       381 ~~al~~  386 (388)
T COG1168         381 KRALKK  386 (388)
T ss_pred             HHHHhc
Confidence            877654

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.94  E-value=1.6e-24  Score=212.56  Aligned_cols=314  Identities=12%  Similarity=0.030  Sum_probs=207.3

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCC-CCeEECC-ChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH
Q psy12303        107 APVFILMETVVLEKMRQIIGWQG-GDSILAP-GGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC  184 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~-~~~~~t~-ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~  184 (480)
                      ++.+.++.+++++.+++++|+++ .+++|++ |||.++..++.....              +++..++. ...|.+-...
T Consensus        43 ~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~--------------~~~~~vi~-~g~f~~~~~~  107 (378)
T PRK03080         43 QKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLG--------------ARRVDHLA-WESFGSKWAT  107 (378)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCC--------------CCcceEEE-eCHHHHHHHH
Confidence            45667888899999999999954 5788775 899988888866532              11324444 4577764332


Q ss_pred             --HHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecc
Q psy12303        185 --AAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAA  262 (480)
Q Consensus       185 --~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a  262 (480)
                        ++.+|+.  +++.++.+.++.+|+++++    .       ++.|++++.+|.+|.+.|+++|++  +++|++++||++
T Consensus       108 ~~~~~~g~~--~v~~~~~~~g~~~d~~~i~----~-------~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~  172 (378)
T PRK03080        108 DVVKQLKLE--DPRVLEADYGSLPDLSAVD----F-------DRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDAT  172 (378)
T ss_pred             HHHhhcCCC--CceEeccCCCCCCCHhhcC----C-------CCCEEEEecCCccceeccchhhcc--ccCCCeEEEecc
Confidence              2455652  5677777766778877633    1       346899999999999999999999  889999999999


Q ss_pred             ccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcc-----cccccc--cccCcccC
Q psy12303        263 WGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAE-----YLFMQD--KLYDVRYD  335 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~-----~l~~~~--~~~~~~~~  335 (480)
                      ++.+..+.+..         .+|++++++|||+++|.|+|+++++++ .+........+     |+.-..  ......++
T Consensus       173 qs~G~~pidv~---------~iD~~~~s~~K~l~~P~G~g~l~v~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  242 (378)
T PRK03080        173 SAAFALPLDWS---------KLDVYTFSWQKVLGGEGGHGMAILSPR-AVERLESYTPARPIPKFFRLTKGGKAIENSFK  242 (378)
T ss_pred             cccccCCCCHH---------HCcEEEEehhhhCCCCCceEEEEECHH-HHHhhhcccCCCCCchhheeccchHHhhhhhc
Confidence            99999877753         369999999999999999999999865 33333222111     110000  00000111


Q ss_pred             CCCccccCCCCC-CchHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-C--ce-eEEEEEeecCcc
Q psy12303        336 TGDKVIQCGRHN-DIFKLWLQWRAKGDE-GFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-P--EM-VNVSFWYLPTRV  409 (480)
Q Consensus       336 ~~~~~~~~~r~~-~~l~~~~~l~~~g~~-~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~--~~-~~v~f~~~~~~~  409 (480)
                      .+..   .+-.. ...++..+++.+-.. |++++.+|..++++++++.|++ .++++++.+ +  .. .+++|.. +...
T Consensus       243 ~~t~---~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~-~~~~~~~~~~~~~~s~~i~~~~~-~~~~  317 (378)
T PRK03080        243 GQTI---NTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEK-TPWATPLVADPATRSNTSVTLDF-VDAQ  317 (378)
T ss_pred             CCcc---cCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-CCCcccccCCccccCccEEEEEc-CCch
Confidence            1111   01111 122335567777666 7899999999999999999999 777777642 2  12 3566643 2100


Q ss_pred             CCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        410 RNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       410 ~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+         .   ..++..++.++|+++... ......+.+|+| ++.++|++||+++++.|++++++
T Consensus       318 ~~---------~---~~~~~~~l~~~~i~v~~g-~~~~~~~~vRis-~~~~~t~~di~~l~~al~~~~~~  373 (378)
T PRK03080        318 AA---------V---DAAAVAKLLRENGAVDIE-PYRDAPNGLRIW-CGPTVEPADVEALTPWLDWAFER  373 (378)
T ss_pred             HH---------H---HHHHHHHHHHcCCeeccc-cccCCCCcEEEe-cCCCCCHHHHHHHHHHHHHHHHH
Confidence            00         0   123445565666443321 111114689999 89999999999999999987654

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.93  E-value=7.5e-23  Score=203.01  Aligned_cols=314  Identities=14%  Similarity=0.106  Sum_probs=214.7

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHhCC--CC-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCc
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQIIGW--QG-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH  178 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~g~--~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h  178 (480)
                      ..|....+...+.+.+++++++.+|.  ++ .++++|+|+++++..++.+..+              ||+ .|++..++|
T Consensus        72 ~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~~--------------~Gd-~Vlv~~P~y  136 (405)
T PRK06207         72 QAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVA--------------RGD-KVAIVQPDY  136 (405)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcC--------------CCC-EEEEeCCCc
Confidence            45655566778999999999999995  44 7899999999999988887754              556 788888999


Q ss_pred             hhHHHHHHHcCCCCCCeEEeeCC-----CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHH
Q psy12303        179 YSVRSCAAVCGLGTDNCVEVPSD-----KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADIC  250 (480)
Q Consensus       179 ~s~~~~~~~~g~~~~~v~~v~~~-----~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~  250 (480)
                      +.+...++.+|.   +++.++++     .++.+|+++|++++++.      +++|++++|+||||.+.+   +++|.++|
T Consensus       137 ~~~~~~~~~~g~---~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~------~k~v~l~~P~NPTG~~~s~e~l~~l~~~a  207 (405)
T PRK06207        137 FANRKLVEFFEG---EMVPVQLDYLSADKRAGLDLDQLEEAFKAG------VRVFLFSNPNNPAGVVYSAEEIAQIAALA  207 (405)
T ss_pred             hhHHHHHHHcCC---EEEEEeccccCcccCCCcCHHHHHHhhhhc------CeEEEECCCCCCCCcCCCHHHHHHHHHHH
Confidence            999999999998   78888875     25789999999998765      789999999999999977   77888899


Q ss_pred             HHcCcEEEeeccccccccccccccCc-ccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCccccccccc
Q psy12303        251 QKYNMWLHVDAAWGGGLLLSKKYRHP-RLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDK  328 (480)
Q Consensus       251 ~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  328 (480)
                      ++||+++++|++|+...+........ .+.....--+++.|++|.++ .+..+|+++. ++............+...   
T Consensus       208 ~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~-~~~l~~~~~~~~~~~~~~---  283 (405)
T PRK06207        208 RRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFG-SPAIIDRMEKLQAIVSLR---  283 (405)
T ss_pred             HHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEc-CHHHHHHHHHHHhHhccC---
Confidence            99999999999999765422111110 01110112256779999998 4467999875 444444332211111000   


Q ss_pred             ccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeec
Q psy12303        329 LYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLP  406 (480)
Q Consensus       329 ~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~  406 (480)
                                        ...+...+....+  +...+++.+++..+.++.+.+.|++ ++++.+. +|..+.++|...+
T Consensus       284 ------------------~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~-~p~gg~fl~~~l~  343 (405)
T PRK06207        284 ------------------AAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRG-VEGVFVR-APQAGSYLFPRLP  343 (405)
T ss_pred             ------------------CCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc-CCCceec-CCCeeEEEEEeCc
Confidence                              0111122222222  3345677788888889999999988 7788764 5777777765443


Q ss_pred             CccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        407 TRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       407 ~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ..  ..+           ..++.+.|. +.|+.+.....+.. ..+++|+++..   ++++++..+++|.+.+++
T Consensus       344 ~~--~~~-----------~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~---~~~~l~~al~rl~~~l~~  402 (405)
T PRK06207        344 RL--AVS-----------LHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ---DHAAAVAAAERIAQLIER  402 (405)
T ss_pred             cc--CCC-----------HHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecC---CHHHHHHHHHHHHHHHHH
Confidence            21  000           134566675 45754443322221 15799999543   689999999999887654

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.93  E-value=1.1e-23  Score=209.14  Aligned_cols=303  Identities=18%  Similarity=0.184  Sum_probs=203.1

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      ..+..++++.+++++|.+.  +++++||++|+..++.+..+              ||+ .|+++..+|+++..++..++.
T Consensus        82 ~~~~~~le~~ia~~~g~~~--~ii~~~~~~a~~~~~~~l~~--------------~gd-~vi~~~~~~~s~~~~~~~~~~  144 (393)
T TIGR01822        82 QDIHKELEAKIAAFLGTED--TILYASCFDANGGLFETLLG--------------AED-AIISDALNHASIIDGVRLCKA  144 (393)
T ss_pred             hHHHHHHHHHHHHHhCCCc--EEEECchHHHHHHHHHHhCC--------------CCC-EEEEeccccHHHHHHHHhcCC
Confidence            4455667788999999853  77778999999977766533              556 888899999999998888775


Q ss_pred             CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccc
Q psy12303        191 GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLS  270 (480)
Q Consensus       191 ~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~  270 (480)
                         ..+.++     .+|+++|++++++....+.++++|+.++.++++|.+.|+++|.++|++||+++++|++|+.+....
T Consensus       145 ---~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~  216 (393)
T TIGR01822       145 ---KRYRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGP  216 (393)
T ss_pred             ---ceEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCC
Confidence               333333     369999999998754433458899999999999999999999999999999999999997665422


Q ss_pred             ccccCcccCCC-CCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC-C
Q psy12303        271 KKYRHPRLTGI-ERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN-D  348 (480)
Q Consensus       271 ~~~~~~~~~~~-~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~-~  348 (480)
                      .........++ .++|+++.++||+++++ ..|+++. ++...........++...                 ++... .
T Consensus       217 ~~~~~~~~~~~~~~~di~~~s~sK~l~g~-r~G~~~~-~~~~~~~l~~~~~~~~~~-----------------~~~~~~~  277 (393)
T TIGR01822       217 TGRGSHELCGVMGRVDIITGTLGKALGGA-SGGFTTA-RKEVVELLRQRSRPYLFS-----------------NSLPPAV  277 (393)
T ss_pred             CCCchHHhcCCCCCCeEEEEEChHHhhCC-CcEEEEe-CHHHHHHHHHhCccceec-----------------CCCCHHH
Confidence            11000011122 26899999999998754 5677664 455554433221222211                 11111 1


Q ss_pred             chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHH
Q psy12303        349 IFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPIL  428 (480)
Q Consensus       349 ~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i  428 (480)
                      ..++..+++.+  +..+++.++..++++++.+.|++  .|+++. ++....+.+...+ .            .  ...++
T Consensus       278 ~~a~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~-~~~~~~~~i~~~~-~------------~--~~~~l  337 (393)
T TIGR01822       278 VGASIKVLEML--EASNELRDRLWANTRYFRERMEA--AGFDIK-PADHPIIPVMLYD-A------------V--LAQRF  337 (393)
T ss_pred             HHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHH--cCCCCC-CCCCCEEEEEeCC-H------------H--HHHHH
Confidence            12233333332  23466778889999999999988  488764 3334444443211 1            0  02457


Q ss_pred             HHHHHhcccEEEeeeeeC---CcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        429 KGRMMQAGTMMVGYQPLN---DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       429 ~~~l~~~g~~~~~~~~~~---~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+.|.++|+.+ ......   .....+|++ ++..+|++||++++++|+++.++
T Consensus       338 ~~~L~~~gI~v-~~~~~~~~~~~~~~iRis-~~~~~t~edi~~~~~~l~~~~~~  389 (393)
T TIGR01822       338 ARRLLEEGIYV-TGFFYPVVPKGQARIRVQ-ISAAHTEEQLDRAVEAFTRIGRE  389 (393)
T ss_pred             HHHHHHCCeeE-eeeCCCCCCCCCceEEEE-ECCCCCHHHHHHHHHHHHHHHHH
Confidence            78888888443 322111   113579999 88899999999999999988764

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.93  E-value=2.4e-23  Score=205.96  Aligned_cols=324  Identities=14%  Similarity=0.120  Sum_probs=220.6

Q ss_pred             HHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhC--CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccC
Q psy12303         89 AGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIG--WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIK  166 (480)
Q Consensus        89 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~  166 (480)
                      +.+.+...+......|....+..++.+.+.+++.+.+|  ++++++++|+|+++|+..++.+..+              |
T Consensus        42 ~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~--------------~  107 (382)
T PRK06108         42 IRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVG--------------P  107 (382)
T ss_pred             HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhcC--------------C
Confidence            34555544433334466667778899999999999888  6778899999999999888877654              4


Q ss_pred             CceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC---CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC-
Q psy12303        167 GQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK---RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP-  242 (480)
Q Consensus       167 g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~---~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~-  242 (480)
                      |+ .|+++.++|+.+...++.+|.   +++.+|.+.   ++.+|+++|++.+++.      +++|++++++||||.+.+ 
T Consensus       108 gd-~vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~~~l~~~~~~~------~~~i~l~~p~NPtG~~~~~  177 (382)
T PRK06108        108 GD-EVVAVTPLWPNLVAAPKILGA---RVVCVPLDFGGGGWTLDLDRLLAAITPR------TRALFINSPNNPTGWTASR  177 (382)
T ss_pred             CC-EEEEeCCCccchHHHHHHCCC---EEEEeeCCCCCCCccCCHHHHHHhcCcc------ceEEEEECCCCCCCcccCH
Confidence            45 788888999999999998888   888899863   3579999999988654      889999999999998865 


Q ss_pred             --hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCC---CCCccceeCccccCCC-cccceEEEEeCchhhHhhh
Q psy12303        243 --IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGI---ERADSVTWNPHKLMGT-LLQCSTIHFKQDGLLISCN  316 (480)
Q Consensus       243 --l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~---~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~~  316 (480)
                        +++|.++|+++|+|+++|++|+.+...... ..+....+   ....+++.|++|.++. +.++|+++.. +..+....
T Consensus       178 ~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~-~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~-~~~~~~~~  255 (382)
T PRK06108        178 DDLRAILAHCRRHGLWIVADEVYERLYYAPGG-RAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAP-PALGQVLE  255 (382)
T ss_pred             HHHHHHHHHHHHCCcEEEEehhhhhhccCCCC-CCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCC-HHHHHHHH
Confidence              688999999999999999999987653111 11011111   1234677899998864 4678999874 44443322


Q ss_pred             cCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC
Q psy12303        317 QMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE  394 (480)
Q Consensus       317 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~  394 (480)
                      ... .+...                 +   ...+...++...+  +.+.+++..++..++.+++.+.|++ .+++++. +
T Consensus       256 ~~~-~~~~~-----------------~---~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~-~  312 (382)
T PRK06108        256 KLI-EYNTS-----------------C---VAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRA-LPGVEVA-K  312 (382)
T ss_pred             HHH-Hhccc-----------------C---CChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh-CCCCccc-C
Confidence            110 11000                 0   1122222222222  4556788888999999999999998 7888875 5


Q ss_pred             CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHH
Q psy12303        395 PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTE  472 (480)
Q Consensus       395 ~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~  472 (480)
                      |+.++++|...+....              ..++.+.|.+ .|+.+.....+.. ..+++|+++. .  ++++++..+++
T Consensus       313 p~~g~~~~~~l~~~~~--------------~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~-~--~~~~l~~~l~~  375 (382)
T PRK06108        313 PDGAMYAFFRIPGVTD--------------SLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFA-R--DPARLDEAVER  375 (382)
T ss_pred             CCeeEEEEEeCCCCCC--------------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec-C--CHHHHHHHHHH
Confidence            6667665543332211              2356666654 5654433222211 1579999944 3  89999999999


Q ss_pred             HHHhhc
Q psy12303        473 MDRLGH  478 (480)
Q Consensus       473 l~~~~~  478 (480)
                      |+++++
T Consensus       376 l~~~l~  381 (382)
T PRK06108        376 LRRFLA  381 (382)
T ss_pred             HHHHHh
Confidence            988764

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.93  E-value=1.8e-23  Score=207.11  Aligned_cols=327  Identities=13%  Similarity=0.144  Sum_probs=221.2

Q ss_pred             hHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhC--CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCcc
Q psy12303         88 MAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIG--WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAI  165 (480)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~  165 (480)
                      .+.+.+...+......|...++..++++.+++++.+.+|  ++++++++|+|+++|+..++.+...              
T Consensus        50 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--------------  115 (391)
T PRK08361         50 NIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLE--------------  115 (391)
T ss_pred             HHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcC--------------
Confidence            344555554444334465556778888888888887776  4567899999999999988877643              


Q ss_pred             CCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC-
Q psy12303        166 KGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP-  242 (480)
Q Consensus       166 ~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~-  242 (480)
                      ||+ .|+++.++|.++...+...|.   +++.+|+++  ++.+|++++++.+++.      +++|++++++||||.+.| 
T Consensus       116 ~g~-~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~i~~~------~~~v~i~~p~NPtG~~~~~  185 (391)
T PRK08361        116 EGD-EVIIPDPAFVCYVEDAKIAEA---KPIRIPLREENEFQPDPDELLELITKR------TRMIVINYPNNPTGATLDK  185 (391)
T ss_pred             CCC-EEEEcCCCCcccHHHHHHcCC---EEEEEecCCccCCCCCHHHHHHhcccc------cEEEEEeCCCCCCCcCcCH
Confidence            445 788889999999999998888   888999875  4579999999998765      789999999999999988 


Q ss_pred             --hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCC
Q psy12303        243 --IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMS  319 (480)
Q Consensus       243 --l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~  319 (480)
                        +++|.++|+++++++++|++|+.+....... .+........++++.|++|.++.| ..+|++++. ++.+...... 
T Consensus       186 ~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~~-~~~~~~~~~~-  262 (391)
T PRK08361        186 EVAKAIADIAEDYNIYILSDEPYEHFLYEGAKH-YPMIKYAPDNTILANSFSKTFAMTGWRLGFVIAP-EQVIKDMIKL-  262 (391)
T ss_pred             HHHHHHHHHHHHcCeEEEEEcccccceeCCCCC-CCHhhcCCCCEEEEecCchhcCCcHhhhhhhccC-HHHHHHHHHH-
Confidence              8889999999999999999998765422111 101111113467888999999854 458998874 4444432211 


Q ss_pred             cccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cH--HHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC
Q psy12303        320 AEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GD--EGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP  395 (480)
Q Consensus       320 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~--~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~  395 (480)
                      ..+....                    ...+...++...+  +.  +.+++..++..+..+.+.+.|++ ++++++. .|
T Consensus       263 ~~~~~~~--------------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~-~p  320 (391)
T PRK08361        263 HAYIIGN--------------------VASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKE-MPHIKVF-EP  320 (391)
T ss_pred             HhhhccC--------------------CChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHh-CCCCeec-CC
Confidence            1111000                    1122222322222  21  34677778888889999999999 7888864 56


Q ss_pred             ceeEEEEEeecC-ccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHH
Q psy12303        396 EMVNVSFWYLPT-RVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTE  472 (480)
Q Consensus       396 ~~~~v~f~~~~~-~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~  472 (480)
                      +.+.++|.-.+. ...              ..++.+.+.+ .|+.+.....+.. ..+++|+++.   .++++++..++.
T Consensus       321 ~g~~~~~~~l~~~~~~--------------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~---~~~~~l~~al~~  383 (391)
T PRK08361        321 KGAFYVFANIDETGMS--------------SEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYA---TSKEKLIEAMER  383 (391)
T ss_pred             CEEEEEEEECCCCCCC--------------HHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEec---CCHHHHHHHHHH
Confidence            767666543332 111              1345566654 5644433222221 1479999954   367899999999


Q ss_pred             HHHhhccC
Q psy12303        473 MDRLGHDL  480 (480)
Q Consensus       473 l~~~~~~l  480 (480)
                      |++.++++
T Consensus       384 l~~~l~~~  391 (391)
T PRK08361        384 MEKALEEL  391 (391)
T ss_pred             HHHHHhcC
Confidence            99887654

>PRK07179 hypothetical protein; Provisional

Probab=99.93  E-value=1.1e-23  Score=209.72  Aligned_cols=293  Identities=15%  Similarity=0.149  Sum_probs=196.4

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      ..++.+.+++++|.+.  +++++||++||..++.++..              +|+ .|+++...|.++...+...|.   
T Consensus       101 ~~~le~~la~~~g~~~--~~~~~sG~~An~~~l~~l~~--------------~g~-~v~~~~~~h~s~~~~~~~~g~---  160 (407)
T PRK07179        101 KPQFEKKLAAFTGFES--CLLCQSGWAANVGLLQTIAD--------------PNT-PVYIDFFAHMSLWEGVRAAGA---  160 (407)
T ss_pred             HHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHhCC--------------CCC-EEEEECCcCHHHHHHHHHCCC---
Confidence            3444567889899865  78999999999999987753              345 788899999999888888776   


Q ss_pred             CeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccc
Q psy12303        194 NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       194 ~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~  273 (480)
                      ++..++.     .|+++|++++++.     .+++|++++++|++|.+.|+++|.++|+++|+++|+|++|+.+.......
T Consensus       161 ~~~~~~~-----~d~~~l~~~l~~~-----~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~  230 (407)
T PRK07179        161 QAHPFRH-----NDVDHLRRQIERH-----GPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGA  230 (407)
T ss_pred             eEEEecC-----CCHHHHHHHHHhc-----CCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCC
Confidence            5544433     4999999999752     17889999999999999999999999999999999999998764321100


Q ss_pred             cCcccCCC-CCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC-CchH
Q psy12303        274 RHPRLTGI-ERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN-DIFK  351 (480)
Q Consensus       274 ~~~~~~~~-~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~-~~l~  351 (480)
                      ......++ +.+|+++.|+||++++  +.|+++.+ ++..........++...                 ++-.. .+.+
T Consensus       231 g~~~~~~~~~~vdi~~~S~sK~~g~--~~G~l~~~-~~~~~~~~~~~~~~~~~-----------------~t~~~~~~aa  290 (407)
T PRK07179        231 GLVAELGLTSRVHFITASLAKAFAG--RAGIITCP-RELAEYVPFVSYPAIFS-----------------STLLPHEIAG  290 (407)
T ss_pred             chHHhcCCCCCCCEEEeechHhhhc--cCeEEEeC-HHHHHHHHHhCcCeeeC-----------------CCCCHHHHHH
Confidence            00001122 2579999999999985  37777764 44433322111111111                 00001 1222


Q ss_pred             HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHH
Q psy12303        352 LWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGR  431 (480)
Q Consensus       352 ~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~  431 (480)
                      +.++++.+  +...+..++..+++++|.+.|.+ + |+++.  ....++.+.+ +..            .  -...+.+.
T Consensus       291 ~~aal~~~--~~~~~~~~~l~~~~~~l~~~L~~-~-g~~v~--~~~~i~~l~~-~~~------------~--~~~~~~~~  349 (407)
T PRK07179        291 LEATLEVI--ESADDRRARLHANARFLREGLSE-L-GYNIR--SESQIIALET-GSE------------R--NTEVLRDA  349 (407)
T ss_pred             HHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHH-c-CCCCC--CCCCEEEEEe-CCH------------H--HHHHHHHH
Confidence            33344442  22355778899999999999999 5 87765  2334444432 110            0  02356677


Q ss_pred             HHhcccEE---EeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        432 MMQAGTMM---VGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       432 l~~~g~~~---~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      |.++|+..   ..+....+ .+++|++ ++..+|++||++++++|++++++
T Consensus       350 L~~~GI~~~~~~~p~~~~~-~~~lRis-~~~~~t~edi~~~~~~l~~~~~~  398 (407)
T PRK07179        350 LEERNVFGAVFCAPATPKN-RNLIRLS-LNADLTASDLDRVLEVCREARDE  398 (407)
T ss_pred             HHHCCceEeeecCCCCCCC-CceEEEE-ECCCCCHHHHHHHHHHHHHHHHh
Confidence            88888542   11111112 4799999 88899999999999999988754

>PRK07324 transaminase; Validated

Probab=99.93  E-value=6.6e-23  Score=201.30  Aligned_cols=310  Identities=13%  Similarity=0.099  Sum_probs=205.9

Q ss_pred             cCcCCcchhcChhhHHHHHHHHHHHHHHh-CCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecC
Q psy12303         97 ANTNMFTYEIAPVFILMETVVLEKMRQII-GWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSD  175 (480)
Q Consensus        97 ~~~~~~~~~~~~~~~~~e~~~~~~la~~~-g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~  175 (480)
                      +......|....+..++++.    +++++ +.++.++++|+|+++|+..++.+..+              ||+ .|+++.
T Consensus        51 ~~~~~~~Y~~~~G~~~lr~~----ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~~--------------~gd-~Vl~~~  111 (373)
T PRK07324         51 LGQKKLTYGWIEGSPEFKEA----VASLYQNVKPENILQTNGATGANFLVLYALVE--------------PGD-HVISVY  111 (373)
T ss_pred             HhcCCccCCCCCCCHHHHHH----HHHHhcCCChhhEEEcCChHHHHHHHHHHhCC--------------CCC-EEEEcC
Confidence            34334456555555555555    55555 36777899999999999999887754              556 788888


Q ss_pred             CCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHH
Q psy12303        176 QCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADIC  250 (480)
Q Consensus       176 ~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~  250 (480)
                      ++|.++...++..|.   +++.+|++.  ++.+|+++++++++++      +++|++++++||||.+.+   +++|+++|
T Consensus       112 P~y~~~~~~~~~~g~---~v~~v~~~~~~~~~~d~~~l~~~~~~~------~kli~i~~p~NPtG~~~~~~~l~~i~~~a  182 (373)
T PRK07324        112 PTYQQLYDIPESLGA---EVDYWQLKEENGWLPDLDELRRLVRPN------TKLICINNANNPTGALMDRAYLEEIVEIA  182 (373)
T ss_pred             CCchhHHHHHHHcCC---EEEEEecccccCCCCCHHHHHHhCCCC------CcEEEEeCCCCCCCCCCCHHHHHHHHHHH
Confidence            999999999999988   788999875  3568999998887654      889999999999999988   89999999


Q ss_pred             HHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCC-cccceEEEEeCchhhHhhhcCCcccccccccc
Q psy12303        251 QKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGT-LLQCSTIHFKQDGLLISCNQMSAEYLFMQDKL  329 (480)
Q Consensus       251 ~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  329 (480)
                      ++||+++++|++|........ ..  .+.....-.+.+.+++|.++. +..+|+++. ++..+........ +...    
T Consensus       183 ~~~~~~ii~De~y~~l~~~~~-~~--s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~~-~~~li~~~~~~~~-~~~~----  253 (373)
T PRK07324        183 RSVDAYVLSDEVYRPLDEDGS-TP--SIADLYEKGISTNSMSKTYSLPGIRVGWIAA-NEEVIDILRKYRD-YTMI----  253 (373)
T ss_pred             HHCCCEEEEEccccccccCCC-CC--ChhhccCCEEEEecchhhcCCccceeEEEec-CHHHHHHHHHHhC-cEEe----
Confidence            999999999999977543211 11  111111223556689999874 467899886 5555544332111 1000    


Q ss_pred             cCcccCCCCccccCCCCCCchHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecC
Q psy12303        330 YDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG--DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPT  407 (480)
Q Consensus       330 ~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g--~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~  407 (480)
                                   +   ...+..+++...+.  ...++...+...+..+.+.+.|.+ .+++.++ .|..+.+.|...+.
T Consensus       254 -------------~---~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~-~~~~~~~-~p~gg~~~~i~~~~  315 (373)
T PRK07324        254 -------------C---AGVFDDMLASLALEHRDAILERNRKIVRTNLAILDEWVAK-EPRVSYV-KPKAVSTSFVKLDV  315 (373)
T ss_pred             -------------c---CChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCceEE-CCCceEEEEEEeCC
Confidence                         0   11222333333221  234455566667778888899988 7788765 56666655544432


Q ss_pred             ccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        408 RVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       408 ~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ...              ..++.+++. +.|+. +.++...+..+++|+++.   .+++.+++.+++|++++++
T Consensus       316 ~~~--------------~~~~~~~ll~~~gv~-v~pg~~F~~~~~iRis~~---~~~~~l~~~l~rl~~~l~~  370 (373)
T PRK07324        316 DMP--------------SEDFCLKLLKETGVL-LVPGNRFDLEGHVRIGYC---CDTETLKKGLKKLSEFLRE  370 (373)
T ss_pred             CCC--------------HHHHHHHHHHhcCEE-EECccccCCCCeEEEEec---CCHHHHHHHHHHHHHHHHh
Confidence            211              234566665 45644 444333333679999943   3689999999999887654

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.93  E-value=1.7e-23  Score=200.02  Aligned_cols=338  Identities=17%  Similarity=0.158  Sum_probs=236.6

Q ss_pred             ccCCCCCccccccCCCChHHhHHHHHHHH-cC--cCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHH
Q psy12303         68 VRTGHPMFMNQLSCGLDVVSMAGEWLIAT-AN--TNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLY  144 (480)
Q Consensus        68 ~~~~~p~~~~~~~~~~~~~~~~~~~l~~~-~~--~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~  144 (480)
                      +.+.+..|++....+....++. +.+..+ ..  .........+...++|+    .+|+++|.+.  .++.++|-.||..
T Consensus        42 ~nf~SNdYLGLa~~~~~~~a~~-~~~~~~g~g~~gsR~i~G~~~~h~~LE~----~lA~f~g~e~--al~f~SGy~AN~~  114 (388)
T COG0156          42 LNFCSNDYLGLASHPELIEAAK-AAIRRYGVGAGGSRLISGTSDLHVELEE----ELADFLGAEA--ALLFSSGFVANLG  114 (388)
T ss_pred             EeeeccCcccccCCHHHHHHHH-HHHHHhCCCCCCcCcccCCcHHHHHHHH----HHHHHhCCCc--EEEEcccchhHHH
Confidence            3578888998876665333222 444432 11  11122233344445554    5999999986  7888889999999


Q ss_pred             HHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCc
Q psy12303        145 AFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDI  224 (480)
Q Consensus       145 al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~  224 (480)
                      ++.+...+               +..|+..+..|.|+..+++..+.   +++..+.+     |+++||+.+++....+.+
T Consensus       115 ~i~~l~~~---------------~dli~~D~lnHASiidG~rls~a---~~~~f~Hn-----D~~~Le~~l~~~~~~~~~  171 (388)
T COG0156         115 LLSALLKK---------------GDLIFSDELNHASIIDGIRLSRA---EVRRFKHN-----DLDHLEALLEEARENGAR  171 (388)
T ss_pred             HHHHhcCC---------------CcEEEEechhhhhHHHHHHhCCC---cEEEecCC-----CHHHHHHHHHhhhccCCC
Confidence            99888653               33899999999999999998887   77777775     999999999986533325


Q ss_pred             cEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCC--CCccceeCccccCCCcccce
Q psy12303        225 PFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIE--RADSVTWNPHKLMGTLLQCS  302 (480)
Q Consensus       225 ~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~--~~D~~~~s~hK~~~~p~~~g  302 (480)
                      .++|+.....++.|.+.||++|++++++|++|++||+||+.|.+--..-..-...|++  .+|+++.++.|.+++   .|
T Consensus       172 ~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs---~G  248 (388)
T COG0156         172 RKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGS---SG  248 (388)
T ss_pred             ceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcc---cC
Confidence            7899999999999999999999999999999999999999998732111110122332  458999999999995   67


Q ss_pred             EEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q psy12303        303 TIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKI  382 (480)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l  382 (480)
                      .++..+....+.......+|++.+...                +..+.++..+++.+  +...++.++..++..++++.+
T Consensus       249 g~v~g~~~~~d~L~~~ar~~ifStalp----------------P~~aaa~~~al~~l--~~~~~~r~~L~~~~~~~~~~~  310 (388)
T COG0156         249 GYIAGSAALIDYLRNRARPFIFSTALP----------------PAVAAAALAALRIL--EEGPERRERLQELAAFFRSLL  310 (388)
T ss_pred             ceeeCcHHHHHHHHHhCCceeccCCCC----------------HHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHH
Confidence            777788877776666667777664221                12333444555553  344677888999999999766


Q ss_pred             hcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEE---EeeeeeCCcccEEEEecccC
Q psy12303        383 KSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMM---VGYQPLNDLPNFFRNIISSA  459 (480)
Q Consensus       383 ~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~---~~~~~~~~~~~~~R~~~~~~  459 (480)
                      ..  .++.+ .+....++.+..-++.               ...++...|.++|+..   ..|++..+ ...+|++ ++.
T Consensus       311 ~~--~~~~~-~~s~s~I~pv~~gd~~---------------~a~~~s~~l~~~Gi~v~~i~~PTVp~g-tarlRi~-lta  370 (388)
T COG0156         311 KA--LGLVL-LPSESPIIPVILGDEE---------------RALEASRALLEEGIYVSAIRPPTVPKG-TARLRIT-LTA  370 (388)
T ss_pred             Hh--cCCcc-CCCCCCeeeeEeCCHH---------------HHHHHHHHHHHCCeeEeeecCCCCCCC-cceEEEE-ecC
Confidence            66  57765 3444555544322111               1345677888887442   22344444 5799999 999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy12303        460 AVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       460 ~~t~~di~~~~~~l~~~  476 (480)
                      .+|++||+++++++.++
T Consensus       371 ~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         371 AHTEEDIDRLAEALSEV  387 (388)
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999999875

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.93  E-value=7.8e-23  Score=202.20  Aligned_cols=327  Identities=13%  Similarity=0.146  Sum_probs=217.8

Q ss_pred             HHHHHHHHc-CcCCcchhcChhhHHHHHHHHHHHHHHhCCC---CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCc
Q psy12303         89 AGEWLIATA-NTNMFTYEIAPVFILMETVVLEKMRQIIGWQ---GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSA  164 (480)
Q Consensus        89 ~~~~l~~~~-~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~---~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~  164 (480)
                      +.+.+...+ +.....|....+...+.+.+++++++.+|.+   +.++++|+|+++++..++.+..+             
T Consensus        45 ~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~-------------  111 (389)
T PRK05957         45 AIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAITD-------------  111 (389)
T ss_pred             HHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcC-------------
Confidence            345554443 2333456555667788889999999999973   56799999999999888776643             


Q ss_pred             cCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC--
Q psy12303        165 IKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP--  242 (480)
Q Consensus       165 ~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~--  242 (480)
                       ||+ .|+++.+.|+.+...++..|+   +++.+|.++++.+|+++|+++++++      +++|++++++||||.+.+  
T Consensus       112 -~gd-~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l~~~i~~~------~klv~~~~p~NPtG~~~~~~  180 (389)
T PRK05957        112 -PGD-EIILNTPYYFNHEMAITMAGC---QPILVPTDDNYQLQPEAIEQAITPK------TRAIVTISPNNPTGVVYPEA  180 (389)
T ss_pred             -CCC-EEEEeCCCCcCHHHHHHhcCC---EEEEeecCCCCCcCHHHHHHhcCcC------ceEEEEeCCCCCCCcCcCHH
Confidence             556 788888888888777788887   8889999888899999999998754      889999999999999987  


Q ss_pred             -hHHHHHHHHHcCcEEEeeccccccccccccccCc-ccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCC
Q psy12303        243 -IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHP-RLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMS  319 (480)
Q Consensus       243 -l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~  319 (480)
                       +++|+++|+++|+++++|++|+...........+ .......-.+++.|+.|.++.| ..+|++++. +..++......
T Consensus       181 ~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~-~~~~~~~~~~~  259 (389)
T PRK05957        181 LLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIP-IHLLEAIKKIQ  259 (389)
T ss_pred             HHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecC-HHHHHHHHHHH
Confidence             8889999999999999999998765421110000 1111112235567899999743 579999864 44444332211


Q ss_pred             cccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCce
Q psy12303        320 AEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEM  397 (480)
Q Consensus       320 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~  397 (480)
                      ..+...                     ...+....+...+  +.+.+++..++..++++.+.+.|++ ++++..+.+|..
T Consensus       260 ~~~~~~---------------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~~~g  317 (389)
T PRK05957        260 DTILIC---------------------PPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQ-LQDRCTLHPANG  317 (389)
T ss_pred             hhcccC---------------------CCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh-cCCCccccCCCe
Confidence            111000                     1112233333333  3455677778888889999999998 777523356777


Q ss_pred             eEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeCCc--ccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        398 VNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLNDL--PNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       398 ~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~~~--~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                      +.+++...+...+              ..++.+.+.+ .|+. +.++...+.  .+++|+++..  .++++++..+++|.
T Consensus       318 g~~~~~~~~~~~~--------------~~~~~~~l~~~~gv~-v~pg~~f~~~~~~~iRis~~~--~~~~~l~~~~~~l~  380 (389)
T PRK05957        318 AFYCFLKVNTDLN--------------DFELVKQLIREYRVA-VIPGTTFGMKNGCYLRIAYGA--LQKATAKEGIERLV  380 (389)
T ss_pred             eEEEEEeCCCCCC--------------hHHHHHHHHHHCCEE-EccchhhCCCCCCEEEEEEec--CCHHHHHHHHHHHH
Confidence            7766543332211              2356677764 5654 444332221  4699999533  36778888888887


Q ss_pred             Hhhcc
Q psy12303        475 RLGHD  479 (480)
Q Consensus       475 ~~~~~  479 (480)
                      +.+++
T Consensus       381 ~~~~~  385 (389)
T PRK05957        381 QGLKT  385 (389)
T ss_pred             HHHHh
Confidence            76654

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.93  E-value=4.9e-23  Score=201.37  Aligned_cols=300  Identities=16%  Similarity=0.130  Sum_probs=200.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        110 FILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .....+++++.+++++|.+.  .+++++||+++..++.++.+              ||+ .|+++..+|+++..++...|
T Consensus        44 ~~~~~~~l~~~la~~~~~~~--~iv~~sg~~a~~~~~~~~~~--------------~gd-~Vl~~~~~~~~~~~~~~~~g  106 (349)
T cd06454          44 TSDLHEELEEELAEFHGKEA--ALVFSSGYAANDGVLSTLAG--------------KGD-LIISDSLNHASIIDGIRLSG  106 (349)
T ss_pred             CchHHHHHHHHHHHHhCCCC--EEEeccHHHHHHHHHHHhcC--------------CCC-EEEEehhhhHHHHHHHHHcC
Confidence            35566677888999999864  67778889999888776643              445 78899999999998888888


Q ss_pred             CCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccc
Q psy12303        190 LGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLL  269 (480)
Q Consensus       190 ~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~  269 (480)
                      .   +++.++.     +|++.+++++++.. +..++++|++++++|++|...|+++|.++|+++|+++|+|++|+.+.+.
T Consensus       107 ~---~~~~~~~-----~~~~~le~~i~~~~-~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~  177 (349)
T cd06454         107 A---KKRIFKH-----NDMEDLEKLLREAR-RPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYG  177 (349)
T ss_pred             C---ceEEecC-----CCHHHHHHHHHHhh-ccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccccC
Confidence            7   6666653     48889999987643 2234789999999999999999999999999999999999999865442


Q ss_pred             cccccCc-ccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC-C
Q psy12303        270 SKKYRHP-RLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-N  347 (480)
Q Consensus       270 ~~~~~~~-~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-~  347 (480)
                      ......+ ......+.|+++.|+||+++. .+ |+++. ++............+...                 .+.. .
T Consensus       178 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~g-G~i~~-~~~~~~~~~~~~~~~~~~-----------------~~~~~~  237 (349)
T cd06454         178 PHGRGVEEFGGLTDDVDIIMGTLGKAFGA-VG-GYIAG-SKELIDYLRSYARGFIFS-----------------TSLPPA  237 (349)
T ss_pred             CCCCChhhhccccccCcEEEeechhhhcc-cC-CEEEC-CHHHHHHHHHhchhhhcc-----------------CCCCHH
Confidence            1100000 111223679999999999985 33 65554 444444332222111110                 0000 1


Q ss_pred             CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHH
Q psy12303        348 DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPI  427 (480)
Q Consensus       348 ~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~  427 (480)
                      ...++..+++.+..  +.+..++..++++++.+.|.+ . +++++.++....+++.. +..            .  ...+
T Consensus       238 ~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~~~~~~~~~~~~-~~~------------~--~~~~  298 (349)
T cd06454         238 VAAAALAALEVLQG--GPERRERLQENVRYLRRGLKE-L-GFPVGGSPSHIIPPLIG-DDP------------A--KAVA  298 (349)
T ss_pred             HHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHh-c-CCcccCCCCCcEEEEeC-CCh------------H--HHHH
Confidence            22233344444321  466778889999999999998 4 77776554433333321 111            0  0246


Q ss_pred             HHHHHHhcccEEEeeeeeC---CcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        428 LKGRMMQAGTMMVGYQPLN---DLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       428 i~~~l~~~g~~~~~~~~~~---~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      +.+.|.++|+.+... ...   ...+++|++ ++..++++||++++++|+++
T Consensus       299 ~~~~L~~~gI~~~~~-~~~~~~~~~~~iRi~-~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         299 FSDALLERGIYVQAI-RYPTVPRGTARLRIS-LSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             HHHHHHhCCceEEEe-cCCccCCCCCeEEEE-EeCCCCHHHHHHHHHHHHHh
Confidence            778888887554332 211   013699999 78889999999999999875

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.93  E-value=2.7e-23  Score=220.68  Aligned_cols=372  Identities=14%  Similarity=0.079  Sum_probs=244.1

Q ss_pred             CHHHHHHhcCCCCCCCCCCHHHHHHHHHhhccCCccCCCCCccccccCCCChHHhH-HHHHHH--H-cCcCCcchhcChh
Q psy12303         34 HPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMA-GEWLIA--T-ANTNMFTYEIAPV  109 (480)
Q Consensus        34 ~p~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~l~~--~-~~~~~~~~~~~~~  109 (480)
                      -|.+++...+.++| ++.+..++++.++++...+..  ...|++...-+...|+++ ..++..  + ..-.++..+.+.+
T Consensus        42 iP~~i~~~~~l~lp-~~~sE~e~~~~~~~la~~N~~--~~~~ig~G~y~~~~P~vi~~~i~~~~~~~t~ytPyQ~EisQG  118 (954)
T PRK05367         42 VPASIRLAEPLDLP-AALSEAEALAELRAIASKNKV--FRSYIGQGYYGTHTPPVILRNILENPAWYTAYTPYQPEISQG  118 (954)
T ss_pred             CCHHHhcCCCCCCC-CCCCHHHHHHHHHHHHhcCCC--CCcccCCCCCCCcCcHHHHHHHHhCcchhhccCCCChHHHHH
Confidence            35677655567787 477899999999988766543  223443322222333333 444432  1 1112344456777


Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHH---
Q psy12303        110 FILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAA---  186 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~---  186 (480)
                      .-+.-.+...++++++|++..++.++.++|.+...++++.+..       ++    .++ +|++++..|++...+++   
T Consensus       119 ~Leal~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~~-------~~----~~~-~vlv~~~~hP~~~~v~~t~a  186 (954)
T PRK05367        119 RLEALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRVS-------KS----KSN-RFFVDDDVHPQTLDVLRTRA  186 (954)
T ss_pred             HHHHHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhhc-------cC----CCC-EEEEcCccCHHHHHHHHHHH
Confidence            7777778899999999999999999999999888666554432       11    013 89999999999887654   


Q ss_pred             -HcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccc
Q psy12303        187 -VCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGG  265 (480)
Q Consensus       187 -~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~  265 (480)
                       ..|+   +++.+|.+.+  ++        .+      .+++++++.+ +.+|.+.|+++|+++|+++|++++||+.+..
T Consensus       187 ~~~G~---ev~~~~~~~d--~~--------~~------~~~~vlvq~p-~~~G~i~d~~~i~~~ah~~Gal~~vda~~~A  246 (954)
T PRK05367        187 EPLGI---EVVVGDAAKA--LD--------HD------DVFGVLLQYP-GTSGEVRDYTALIAAAHARGALVAVAADLLA  246 (954)
T ss_pred             HhCCC---EEEEecCccC--CC--------cc------cEEEEEEecC-CCCeeeccHHHHHHHHHHcCCEEEEEehhhh
Confidence             3465   8888887542  11        11      2677777776 7899999999999999999999999997744


Q ss_pred             cccccccccCcccCCCCCCccceeCcccc-----CCCcccceEEEEeCchhhHhhhcCCccccccccc-----------c
Q psy12303        266 GLLLSKKYRHPRLTGIERADSVTWNPHKL-----MGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDK-----------L  329 (480)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~D~~~~s~hK~-----~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~  329 (480)
                      ..+..+...+       ++|+++.++|||     +|+| +.|++++++. +.+.......++-...+.           +
T Consensus       247 l~~l~~pge~-------GaDi~vgs~qkfg~P~g~GGP-~aGflavr~~-~~r~lpgrivG~s~d~~g~~~~~lalqtRe  317 (954)
T PRK05367        247 LTLLTPPGEM-------GADIAVGSAQRFGVPMGFGGP-HAAYFAVRDA-YKRSMPGRIVGVSVDAAGNPALRLALQTRE  317 (954)
T ss_pred             ccCCCChhhc-------CCCEEEeeCcccCCCCCCCCC-CEEEEEECHH-HHhhCCCCeeeeecccCCCccccccccccc
Confidence            4443444455       999999999999     4444 5999999864 333321111111000000           0


Q ss_pred             cCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCcc
Q psy12303        330 YDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRV  409 (480)
Q Consensus       330 ~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~  409 (480)
                      ...+++.++.++.......++.+++.+..+|.+|++++.++...++.++++.|++  +|+++..++....+++.. +.. 
T Consensus       318 qhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~--~G~~~~~~~~f~~~~~~~-~~~-  393 (954)
T PRK05367        318 QHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRA--LGLEVVHDSFFDTLTVEV-GGD-  393 (954)
T ss_pred             ccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh--cCcccCCCCCCCeEEEeC-CCC-
Confidence            0011111111110000001122333345679999999999999999999999987  799987666667777753 111 


Q ss_pred             CCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        410 RNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       410 ~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                                     ..++.++|.+.|+.+ ..   .. .+.+|+| ++..+|++||+.+++.+.
T Consensus       394 ---------------~~~i~~~l~~~gi~~-~~---~~-~~~l~is-~~e~~t~~did~l~~~l~  437 (954)
T PRK05367        394 ---------------AAAVLARALAAGINL-RR---VD-DDHVGIS-LDETTTREDLAALLAVFG  437 (954)
T ss_pred             ---------------HHHHHHHHHHCCcee-cc---cc-CCEEEEE-ecccCCHHHHHHHHHHHc
Confidence                           246888998998544 21   11 3579999 999999999999999996

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.93  E-value=3.7e-23  Score=202.19  Aligned_cols=318  Identities=15%  Similarity=0.150  Sum_probs=214.2

Q ss_pred             HHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEE
Q psy12303         95 ATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMF  172 (480)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl  172 (480)
                      ...+.+...|...+...++++.+.+++...+|.  ...++++++|+|+++..++.++..              +|+ +|+
T Consensus        23 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~--------------~g~-~vl   87 (350)
T cd00609          23 AALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLN--------------PGD-EVL   87 (350)
T ss_pred             HhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCC--------------CCC-EEE
Confidence            344455556666778889999989998888774  245799999999999988887743              335 799


Q ss_pred             ecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCH--HHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHH---
Q psy12303        173 TSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIP--SELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIA---  247 (480)
Q Consensus       173 ~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~--~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~---  247 (480)
                      ++...|+++..+++..|.   +++.++.++++.++.  +.+++.+.+.      +++|++++++|++|.+.|++++.   
T Consensus        88 ~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~v~i~~~~~~tG~~~~~~~l~~l~  158 (350)
T cd00609          88 VPDPTYPGYEAAARLAGA---EVVPVPLDEEGGFLLDLELLEAAKTPK------TKLLYLNNPNNPTGAVLSEEELEELA  158 (350)
T ss_pred             EcCCCchhHHHHHHHCCC---EEEEEecccccCCccCHHHHHhhcCcc------ceEEEEECCCCCCCcccCHHHHHHHH
Confidence            999999999999999987   889999988776665  5555544333      89999999999999999866555   


Q ss_pred             HHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCccccccc
Q psy12303        248 DICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQ  326 (480)
Q Consensus       248 ~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~  326 (480)
                      ++|+++|+++|+|+||+++.............+..+.|++..++||+++ .+.++|++++++..+......... +... 
T Consensus       159 ~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~-~~~~-  236 (350)
T cd00609         159 ELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLP-YTTS-  236 (350)
T ss_pred             HHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHH-hccc-
Confidence            8999999999999999987653222100011122257888999999998 556789988766455444321111 1000 


Q ss_pred             ccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeec
Q psy12303        327 DKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLP  406 (480)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~  406 (480)
                                      ........++...++.. .+++++..++..++++++.+.|.+ .+...+ ..+..+.+.+...+
T Consensus       237 ----------------~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~-~~~~~g~~~~~~~~  297 (350)
T cd00609         237 ----------------GPSTLSQAAAAAALDDG-EEHLEELRERYRRRRDALLEALKE-LGPLVV-VKPSGGFFLWLDLP  297 (350)
T ss_pred             ----------------CCChHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHh-cCCccc-cCCCccEEEEEecC
Confidence                            00011223344444432 267888889999999999999999 655543 23444444442222


Q ss_pred             CccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC--CcccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        407 TRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN--DLPNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       407 ~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~--~~~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                      ....              ...+.+.+.+.|+.+.......  + ..++|+++. ..  ++||++++++|++
T Consensus       298 ~~~~--------------~~~~~~~l~~~gi~i~~~~~~~~~~-~~~iRi~~~-~~--~~~i~~~~~al~~  350 (350)
T cd00609         298 EGDD--------------EEFLERLLLEAGVVVRPGSAFGEGG-EGFVRLSFA-TP--EEELEEALERLAE  350 (350)
T ss_pred             CCCh--------------HHHHHHHHHhCCEEEecccccccCC-CCeEEEEee-CC--HHHHHHHHHHhhC
Confidence            2100              1234566666675544332222  3 579999944 43  9999999999864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.93  E-value=4.3e-23  Score=202.50  Aligned_cols=337  Identities=17%  Similarity=0.132  Sum_probs=207.6

Q ss_pred             ccCCCCCccccccCCCChHHhHHHHHHHHcCcC------CcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHH
Q psy12303         68 VRTGHPMFMNQLSCGLDVVSMAGEWLIATANTN------MFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSIS  141 (480)
Q Consensus        68 ~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a  141 (480)
                      +.+.+..|+++...+...+.+. +.+..+..+.      ........+...+.+++++.+++++|.+.  .++.++|+.|
T Consensus         7 ~~~~s~~YL~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~--~l~~~sG~~a   83 (370)
T PRK05937          7 IDFVTNDFLGFSRSDTLVHEVE-KRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPE--AFIVPSGYMA   83 (370)
T ss_pred             EEeECCCccCCCCCHHHHHHHH-HHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCe--EEEECChHHH
Confidence            3577888999887766555554 4444443211      11111122245667778899999999965  4666667778


Q ss_pred             HHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHC
Q psy12303        142 NLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAK  221 (480)
Q Consensus       142 ~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~  221 (480)
                      |...+.....              +|+ .|+++..+|.|+..++..+..   ..+.++     ..|+++|++++++....
T Consensus        84 ~~~~~~~~~~--------------~~d-~ii~d~~~H~sv~~~~~~~~~---~~~~~~-----~~d~~~l~~~l~~~~~~  140 (370)
T PRK05937         84 NLGLCAHLSS--------------VTD-YVLWDEQVHISVVYSLSVISG---WHQSFR-----HNDLDHLESLLESCRQR  140 (370)
T ss_pred             HHHHHHHhCC--------------CCC-EEEEEhhhhHHHHHHHHHcCC---ceEEec-----CCCHHHHHHHHHhhhcc
Confidence            8643322211              224 788889999999999888642   223333     35899999999865433


Q ss_pred             CCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccc
Q psy12303        222 GDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQC  301 (480)
Q Consensus       222 ~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~  301 (480)
                      +..+.+|+++++++++|.+.|+++|.++|+++|+++|+|+||+.|.+..+........+..+.+.+..+++|.++ |.|.
T Consensus       141 ~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g-~~G~  219 (370)
T PRK05937        141 SFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALG-SMGA  219 (370)
T ss_pred             CCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhh-cCce
Confidence            334677889999999999999999999999999999999999987664432111001122233455677889887 5677


Q ss_pred             eEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q psy12303        302 STIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKK  381 (480)
Q Consensus       302 g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~  381 (480)
                      |+++.  ++..........++.+...                .......++..++..+...+ ....++..++++++.+.
T Consensus       220 ~vl~~--~~~~~~~~~~~~~~~~s~~----------------~~~~~~~a~~aal~~l~~~~-~~~~~~l~~l~~~l~~~  280 (370)
T PRK05937        220 ALLSS--SEVKQDLMLNSPPLRYSTG----------------LPPHLLISIQVAYDFLSQEG-ELARKQLFRLKEYFAQK  280 (370)
T ss_pred             EEEcC--HHHHHHHHHhCCCCeecCC----------------CCHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHh
Confidence            76654  2222222111122221110                00112333444454443333 34567788888888888


Q ss_pred             HhcCC-CCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCC
Q psy12303        382 IKSMP-DKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAA  460 (480)
Q Consensus       382 l~~~~-~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~  460 (480)
                      |.. . ++.         ...+.+ +.. .              ...+.+.|.++|+ ++....... .+++|++ ++.+
T Consensus       281 l~~-~~~~~---------~~~i~~-~~~-~--------------~~~~~~~L~~~gi-~v~~~~~~~-~~~iRis-~~~~  331 (370)
T PRK05937        281 FSS-AAPGC---------VQPIFL-PGI-S--------------EQELYSKLVETGI-RVGVVCFPT-GPFLRVN-LHAF  331 (370)
T ss_pred             cCC-CCCCC---------EEEEEe-CCh-h--------------HHHHHHHHHHCCe-eEEeeCCCC-CCEEEEE-cCCC
Confidence            765 2 111         111221 110 0              2356677778884 444322222 4689999 9999


Q ss_pred             CCHHHHHHHHHHHHHhhcc
Q psy12303        461 VTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       461 ~t~~di~~~~~~l~~~~~~  479 (480)
                      +|++||+++++.|++++++
T Consensus       332 ~t~edid~l~~~L~~~~~~  350 (370)
T PRK05937        332 NTEDEVDILVSVLATYLEK  350 (370)
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            9999999999999887653

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.93  E-value=7.5e-24  Score=206.16  Aligned_cols=299  Identities=16%  Similarity=0.177  Sum_probs=194.1

Q ss_pred             HHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHH---HHHHcC
Q psy12303        113 METVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS---CAAVCG  189 (480)
Q Consensus       113 ~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~---~~~~~g  189 (480)
                      ..+++++++++++|  +.++++++|||+|+..++.+...              ||+ .|+++..+|+++..   .+...|
T Consensus        33 ~~~~l~~~~a~~~g--~~~~~~~~~gt~a~~~~~~~l~~--------------~gd-~v~~~~~~~~~~~~~~~~~~~~g   95 (338)
T cd06502          33 TTAKLEARAAELFG--KEAALFVPSGTAANQLALAAHTQ--------------PGG-SVICHETAHIYTDEAGAPEFLSG   95 (338)
T ss_pred             HHHHHHHHHHHHhC--CCeEEEecCchHHHHHHHHHhcC--------------CCC-eEEEecCcceeeecCCcHHHHcC
Confidence            34566778999999  44789999999999988887643              445 78888999988654   344567


Q ss_pred             CCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHC-CCccEEEEeccCCCcccc--ccChHHHHHHHHHcCcEEEeecccccc
Q psy12303        190 LGTDNCVEVPSDKRGRLIPSELERLVLERKAK-GDIPFFVNCTSGTTVLGA--FDPIEEIADICQKYNMWLHVDAAWGGG  266 (480)
Q Consensus       190 ~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~-~~~~~~v~~~~~~~~~G~--~~~l~~I~~i~~~~~~~l~vD~a~~~~  266 (480)
                      +   +++.+|.+. +.+|+++|++++++..+. ..++++|++++++|+.|.  .+++++|.++|+++|+++|+|+||..+
T Consensus        96 ~---~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~  171 (338)
T cd06502          96 V---KLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLAN  171 (338)
T ss_pred             c---eEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeechHHHHH
Confidence            6   778888764 789999999999752111 124889999999887332  366888999999999999999998644


Q ss_pred             ccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC
Q psy12303        267 LLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH  346 (480)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~  346 (480)
                      ........  ......++|+++.++||+++.|.  |++++.+++...........+.                   .+.+
T Consensus       172 ~~~~~~~~--~~~~~~~~d~~~~s~sK~~~~~~--g~~~~~~~~~~~~~~~~~~~~~-------------------~~~~  228 (338)
T cd06502         172 AAAALGVA--LKTYKSGVDSVSFCLSKGGGAPV--GAVVVGNRDFIARARRRRKQAG-------------------GGMR  228 (338)
T ss_pred             HHHhcCCC--HHHHHhcCCEEEEeccccCCCcc--ceEEECCHHHHHHHHHHHHHhC-------------------CChh
Confidence            32111100  11111268899999999999764  4455556655544322111110                   0001


Q ss_pred             CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhH
Q psy12303        347 NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITP  426 (480)
Q Consensus       347 ~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~  426 (480)
                      ...+.+++++..+...++.+.+++..++++++.+.|++ . ++.+ .++..++++++.....       .....+   ..
T Consensus       229 ~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~-~~~~~~~~~v~~~~~~-------~~~~~l---~~  295 (338)
T cd06502         229 QSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEE-L-GGLE-SEVQTNIVLLDPVEAN-------AVFVEL---SK  295 (338)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh-c-CCCc-ccccCCeEEEecCCcc-------HHHHHH---HH
Confidence            22334444555554445677778999999999999998 5 5544 3566666666432110       111111   11


Q ss_pred             HHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        427 ILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       427 ~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                      ++.+. .+.|..+...    + .+++|++ ++..+|++|++++++.+++
T Consensus       296 ~l~~~-~~~gi~~~~~----~-~~~lRi~-~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         296 EAIER-RGEGVLFYAW----G-EGGVRFV-THWDTTEEDVDELLSALKA  337 (338)
T ss_pred             HHHHh-hhCCEEEEec----C-CCeEEEE-eecCCCHHHHHHHHHHHhc
Confidence            22222 3567443222    2 2689999 8899999999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.92  E-value=9.7e-23  Score=202.34  Aligned_cols=330  Identities=14%  Similarity=0.132  Sum_probs=220.3

Q ss_pred             HHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccC
Q psy12303         89 AGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIK  166 (480)
Q Consensus        89 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~  166 (480)
                      +.+.+...+......|....+...+++.+++++.+..|.  +++++++|+|+++|+..++.++..              +
T Consensus        49 ~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~--------------~  114 (393)
T PRK05764         49 IKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLD--------------P  114 (393)
T ss_pred             HHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcC--------------C
Confidence            335555444333334655566678888888888777664  567899999999999888877643              4


Q ss_pred             CceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC--
Q psy12303        167 GQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP--  242 (480)
Q Consensus       167 g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~--  242 (480)
                      |+ .|+++.+.|..+..+++..|.   +++.+|.++  ++.+|++++++++++.      +++|++++++||+|.+.+  
T Consensus       115 gd-~vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~NPtG~~~~~~  184 (393)
T PRK05764        115 GD-EVIIPAPYWVSYPEMVKLAGG---VPVFVPTGEENGFKLTVEQLEAAITPK------TKALILNSPSNPTGAVYSPE  184 (393)
T ss_pred             CC-EEEecCCCCcchHHHHHHcCC---EEEEEecCcccCCcCCHHHHHHhhCcc------ceEEEEECCCCCCCcccCHH
Confidence            45 788999999999999999888   788898874  4678999999988654      789999999999999855  


Q ss_pred             -hHHHHHHHHHcCcEEEeeccccccccccccccC--cccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcC
Q psy12303        243 -IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH--PRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQM  318 (480)
Q Consensus       243 -l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~--~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~  318 (480)
                       +++|.++|++||+|+++|++|+.+.........  .........++++.+++|.++.| ..+|+++. +++..+.....
T Consensus       185 ~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~-~~~~~~~~~~~  263 (393)
T PRK05764        185 ELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAG-PKELIKAMSKL  263 (393)
T ss_pred             HHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEec-CHHHHHHHHHH
Confidence             889999999999999999999876542111000  01122224567788999999844 45788874 45554433211


Q ss_pred             CcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc
Q psy12303        319 SAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE  396 (480)
Q Consensus       319 ~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~  396 (480)
                      ...+.                     .....+..+++.+.+  ..+.+.+..++..++++.+.+.|++ ++++.+. .|.
T Consensus       264 ~~~~~---------------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~-~~~  320 (393)
T PRK05764        264 QSHST---------------------SNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNE-IPGLECP-KPE  320 (393)
T ss_pred             Hhhcc---------------------cCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhh-CCCCccc-CCC
Confidence            11100                     002233444444444  2455667777888889999999999 7898875 466


Q ss_pred             eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        397 MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       397 ~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                      .+.+.|...+.......       .  ...++...+.+ .|+.+.+...+.. .+++|+++.   .+++++++++++|.+
T Consensus       321 g~~~~~~~~~~~~~~~~-------~--~~~~~~~~l~~~~gi~v~~g~~f~~-~~~vRis~~---~~~~~~~~~i~~l~~  387 (393)
T PRK05764        321 GAFYVFPNVSKLLGKSI-------T--DSLEFAEALLEEAGVAVVPGIAFGA-PGYVRLSYA---TSLEDLEEGLERIER  387 (393)
T ss_pred             cceEEEEeccccccccc-------C--CHHHHHHHHHHhCCEEEccccccCC-CCEEEEEec---CCHHHHHHHHHHHHH
Confidence            65555433332211000       0  01345566654 5654443322322 579999954   379999999999998


Q ss_pred             hhcc
Q psy12303        476 LGHD  479 (480)
Q Consensus       476 ~~~~  479 (480)
                      ++++
T Consensus       388 ~~~~  391 (393)
T PRK05764        388 FLES  391 (393)
T ss_pred             HHHh
Confidence            8764

>PLN02483 serine palmitoyltransferase

Probab=99.92  E-value=1.3e-22  Score=204.49  Aligned_cols=347  Identities=15%  Similarity=0.146  Sum_probs=216.7

Q ss_pred             cCCCCCccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHH
Q psy12303         69 RTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLA  148 (480)
Q Consensus        69 ~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~  148 (480)
                      ++++.+|+++......+...+.+.+..+-.... ......+......++.+.+++++|.+.  .++.++|+.+|..++.+
T Consensus       104 n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~-~sr~~~g~~~~~~ele~~lA~~~g~~~--ai~~~~G~~an~~~i~a  180 (489)
T PLN02483        104 NLGSYNYLGFAAADEYCTPRVIESLKKYSASTC-SSRVDGGTTKLHRELEELVARFVGKPA--AIVFGMGYATNSTIIPA  180 (489)
T ss_pred             EeecCCccCcCCCCHHHHHHHHHHHHHhCCCCC-ccccccCCcHHHHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHH
Confidence            456788988875444444344455655422111 111111223455566777999999754  45556678888877766


Q ss_pred             HHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCC-C----
Q psy12303        149 ARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKG-D----  223 (480)
Q Consensus       149 ~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~-~----  223 (480)
                      ...              ||+ .|++++.+|.++..+++..|+   +++.++.+     |+++|++.+++....+ .    
T Consensus       181 l~~--------------~Gd-~Vi~d~~~h~s~~~~~~~~Ga---~v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~  237 (489)
T PLN02483        181 LIG--------------KGG-LIISDSLNHNSIVNGARGSGA---TIRVFQHN-----TPSHLEEVLREQIAEGQPRTHR  237 (489)
T ss_pred             hCC--------------CCC-EEEEcchhhHHHHHHHHHcCC---eEEEEeCC-----CHHHHHHHHHhhhhcccccccc
Confidence            543              556 899999999999999999988   78888865     6788888887543211 1    


Q ss_pred             --ccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCC--CCCccceeCccccCCCcc
Q psy12303        224 --IPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGI--ERADSVTWNPHKLMGTLL  299 (480)
Q Consensus       224 --~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~~D~~~~s~hK~~~~p~  299 (480)
                        ...+|+++...+++|.+.++++|.++|++||+++++|++|+.+.............++  .++|+++.+++|+++. .
T Consensus       238 p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~-~  316 (489)
T PLN02483        238 PWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGS-C  316 (489)
T ss_pred             CCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhccc-C
Confidence              1236666677799999999999999999999999999999865431100000011121  2679999999999985 3


Q ss_pred             cceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh----cHHHHHHHHHHHHHHH
Q psy12303        300 QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK----GDEGFEKQIDRLMELA  375 (480)
Q Consensus       300 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~----g~~~~~~~~~~~~~l~  375 (480)
                      | |+++ .+++.+.........+.....                .....+..+..+++.+    +.+...+++++..+++
T Consensus       317 G-G~i~-~~~~li~~l~~~~~~~~~~~~----------------~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~  378 (489)
T PLN02483        317 G-GYIA-GSKELIQYLKRTCPAHLYATS----------------MSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENS  378 (489)
T ss_pred             c-eEEE-cCHHHHHHHHHhCccccccCC----------------cCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHH
Confidence            3 5554 556555554322222211100                0001111222334322    1223456678899999


Q ss_pred             HHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC---CcccEE
Q psy12303        376 EYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN---DLPNFF  452 (480)
Q Consensus       376 ~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~---~~~~~~  452 (480)
                      +++.+.|++ + |+++..+.....+.+... ...          .    ..++.+.|.++|+.++. ..+.   .....+
T Consensus       379 ~~l~~~L~~-~-G~~v~~~~~sp~~~l~l~-~~~----------~----~~~~~~~Ll~~GI~v~~-~~fp~~p~~~~~v  440 (489)
T PLN02483        379 NFFRSELQK-M-GFEVLGDNDSPVMPIMLY-NPA----------K----IPAFSRECLKQNVAVVV-VGFPATPLLLARA  440 (489)
T ss_pred             HHHHHHHHH-C-CCcccCCCCCCEEEEEEC-CHH----------H----HHHHHHHHHHCCcEEee-eCCCCCCCCCceE
Confidence            999999999 5 887764433333333221 110          0    13566778888866553 3321   113689


Q ss_pred             EEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        453 RNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       453 R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      |++ .+..+|++||++++++|+++++.
T Consensus       441 Ri~-isa~~t~edId~~l~~L~~~~~~  466 (489)
T PLN02483        441 RIC-ISASHSREDLIKALEVISEVGDL  466 (489)
T ss_pred             EEE-eCCCCCHHHHHHHHHHHHHHHHH
Confidence            999 78889999999999999988654

>PLN00175 aminotransferase family protein; Provisional

Probab=99.92  E-value=2.3e-22  Score=199.77  Aligned_cols=325  Identities=12%  Similarity=0.072  Sum_probs=220.6

Q ss_pred             HHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCC-CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCcc
Q psy12303         89 AGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGG-DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAI  165 (480)
Q Consensus        89 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~  165 (480)
                      +.+.+...+......|....+..++.+.+.+++.+..|.  ++. ++++|+|+++|+..++.+..+              
T Consensus        72 ~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~--------------  137 (413)
T PLN00175         72 VKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLIN--------------  137 (413)
T ss_pred             HHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCC--------------
Confidence            335555444433345666667788999999999888885  444 699999999999888876643              


Q ss_pred             CCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC--
Q psy12303        166 KGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP--  242 (480)
Q Consensus       166 ~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~--  242 (480)
                      ||+ .|++.++.|+.+...++..|.   +++.++.++ ++.+|+++|++++.+.      +++|++++++||||.+.+  
T Consensus       138 ~gd-~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~l~~~~~~~------~k~i~i~~p~NPtG~~~s~~  207 (413)
T PLN00175        138 PGD-EVILFAPFYDSYEATLSMAGA---KIKTVTLRPPDFAVPEDELKAAFTSK------TRAILINTPHNPTGKMFTRE  207 (413)
T ss_pred             CCC-EEEEeCCCchhHHHHHHHcCC---EEEEEECCcccCCCCHHHHHHhcCcC------ceEEEecCCCCCCCcCCCHH
Confidence            556 788888999999999999988   888999874 5789999999998654      889999999999999965  


Q ss_pred             -hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCc
Q psy12303        243 -IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSA  320 (480)
Q Consensus       243 -l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~  320 (480)
                       +++|.++|++|++|+++|++|....+..+......+.+.....+++.|++|.++ .+..+|+++.. +.......... 
T Consensus       208 ~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~-~~l~~~l~~~~-  285 (413)
T PLN00175        208 ELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAH-  285 (413)
T ss_pred             HHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeC-HHHHHHHHHHH-
Confidence             778899999999999999999876542111100012222233467789999998 44688998864 44443322111 


Q ss_pred             ccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCcee
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMV  398 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~  398 (480)
                      .+...                 +   ...+..+++...+  +...+++..++..+.++.+.+.|++ . |+++. +|..+
T Consensus       286 ~~~~~-----------------~---~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~p~g~  342 (413)
T PLN00175        286 SFLTF-----------------A---TATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKE-V-GFKVY-PSSGT  342 (413)
T ss_pred             hhccC-----------------C---CCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCeec-CCCee
Confidence            00000                 0   1222233333333  3456778888888999999999999 4 78864 57777


Q ss_pred             EEEEEeec-CccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeC----CcccEEEEecccCCCCHHHHHHHHHH
Q psy12303        399 NVSFWYLP-TRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLN----DLPNFFRNIISSAAVTEGDIDFLLTE  472 (480)
Q Consensus       399 ~v~f~~~~-~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~----~~~~~~R~~~~~~~~t~~di~~~~~~  472 (480)
                      .+.|.-.+ ....  +           ..++.+.|. +.|+.+.+...+.    ...+++|+++.   .+++++++.+++
T Consensus       343 ~f~~~~~~~~~~~--~-----------~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~---~~~e~l~~~~~r  406 (413)
T PLN00175        343 YFVMVDHTPFGFE--N-----------DIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC---KDEETLRAAVER  406 (413)
T ss_pred             EEEEEeccccCCC--C-----------HHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEc---CCHHHHHHHHHH
Confidence            66553321 1110  0           135566665 4575555433321    11469999954   379999999999


Q ss_pred             HHHhhc
Q psy12303        473 MDRLGH  478 (480)
Q Consensus       473 l~~~~~  478 (480)
                      |++.++
T Consensus       407 L~~~~~  412 (413)
T PLN00175        407 MKTKLK  412 (413)
T ss_pred             HHHHHh
Confidence            998765

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.92  E-value=9e-24  Score=205.70  Aligned_cols=336  Identities=13%  Similarity=0.036  Sum_probs=214.0

Q ss_pred             cccCCCChHHhHHHHHHHHc----CcCCcchhcC---hhhHHHHHHHHHHHHHHhCC-CCCCeEECCC-hhHHHHHHHHH
Q psy12303         78 QLSCGLDVVSMAGEWLIATA----NTNMFTYEIA---PVFILMETVVLEKMRQIIGW-QGGDSILAPG-GSISNLYAFLA  148 (480)
Q Consensus        78 ~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~---~~~~~~e~~~~~~la~~~g~-~~~~~~~t~g-gt~a~~~al~~  148 (480)
                      +.++|...+..+.+.+...+    |.+...+..+   +-+.++.+++++.+++++|+ ++..++||+| +|+|+..++..
T Consensus         3 ~~pGp~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~   82 (355)
T cd00611           3 FSAGPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLN   82 (355)
T ss_pred             CCCCCCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHh
Confidence            44555444333334444443    5555555544   55667888899999999998 4567999988 99999888877


Q ss_pred             HHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCC-C-HHHHHHHHHHHHHCCCccE
Q psy12303        149 ARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRL-I-PSELERLVLERKAKGDIPF  226 (480)
Q Consensus       149 ~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~-d-~~~L~~~i~~~~~~~~~~~  226 (480)
                      ....        +   .+++ +|++....|.+ ...++..|+   +++.++.++++.. + ++..+..+++      .++
T Consensus        83 l~~~--------~---~~~~-~i~~g~~~~~~-~~~a~~~g~---~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~  140 (355)
T cd00611          83 LLGD--------K---GTAD-YVVTGAWSAKA-AKEAKRYGG---VVVIVAAKEEGKYTKIPDVETWDLAP------DAA  140 (355)
T ss_pred             cCCC--------C---CeEE-EEECCHHHHHH-HHHHHhcCC---CcEEEecccccCCCCCCCHhhcCCCC------CCC
Confidence            6321        1   1323 56655444433 335566676   7788887655433 4 2222233333      388


Q ss_pred             EEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEE
Q psy12303        227 FVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHF  306 (480)
Q Consensus       227 ~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~  306 (480)
                      +|++++.+|.+|...  .   ++++.||++++||++++.+..+.+..++       +  ++..++||+++ |.|.|++++
T Consensus       141 lV~~~h~~t~tG~~~--~---~i~~~~g~~~~VDa~qs~g~~~idv~~~-------~--~~~ss~~K~lG-P~G~g~l~~  205 (355)
T cd00611         141 YVHYCSNETIHGVEF--D---EVPDTGGVPLVADMSSNILSRPIDVSKF-------G--VIYAGAQKNLG-PAGVTVVIV  205 (355)
T ss_pred             EEEEeCCcccccEEc--c---eecccCCCeEEEEccccccCCCCCHHHh-------C--EEEeecccccC-CCceEEEEE
Confidence            999999999999972  2   4556699999999999999998887655       3  34456999875 999999998


Q ss_pred             eCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcC
Q psy12303        307 KQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDE-GFEKQIDRLMELAEYMVKKIKSM  385 (480)
Q Consensus       307 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~-~~~~~~~~~~~l~~~l~~~l~~~  385 (480)
                      +++. +.......+.+. ...........+++.++     ....++..+++.+-.+ |++++.++.+++++++.+.|++ 
T Consensus       206 ~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~Tpn~-----~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~-  277 (355)
T cd00611         206 RKDL-LGKARKITPSML-NYKTHADNNSLYNTPPT-----FAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDN-  277 (355)
T ss_pred             CHHH-HhhcccCCCCcc-cHHHHHhcCCCCCCChH-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-
Confidence            7653 333222222221 10000000000111111     2456777778877677 7999999999999999999999 


Q ss_pred             CCCeE-EecCC--ce-eEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCC
Q psy12303        386 PDKFY-LILEP--EM-VNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAV  461 (480)
Q Consensus       386 ~~g~~-~~~~~--~~-~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~  461 (480)
                      +||+. ...++  .. .+++|.....            .+   ..++.+.+.+.|.+ ... .... .+.+|+| +.+++
T Consensus       278 ~~gl~~~~~~~~~rs~~vvsf~~~~~------------~l---~~~~~~~~~r~G~~-~~~-~~~~-~g~vR~S-~~~~n  338 (355)
T cd00611         278 SNGFYRGPVDKRARSRMNVPFRLGKE------------EL---EKEFLKEAEAAGMI-GLK-GHRS-VGGIRAS-IYNAL  338 (355)
T ss_pred             CccccccCCCHHHcCceEEEEEcCCh------------hh---hHHHHHHHHHCCCc-ccC-CCcc-cCeEEEE-ccCCC
Confidence            88863 21111  23 3466643211            01   13444677788864 332 2222 3689999 78999


Q ss_pred             CHHHHHHHHHHHHHhh
Q psy12303        462 TEGDIDFLLTEMDRLG  477 (480)
Q Consensus       462 t~~di~~~~~~l~~~~  477 (480)
                      |++||++++++|+++.
T Consensus       339 t~edi~~l~~al~~~~  354 (355)
T cd00611         339 SLEGVQALADFMKEFQ  354 (355)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999999864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.92  E-value=3.4e-23  Score=189.94  Aligned_cols=309  Identities=19%  Similarity=0.230  Sum_probs=199.8

Q ss_pred             cCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCc
Q psy12303         99 TNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH  178 (480)
Q Consensus        99 ~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h  178 (480)
                      .....|..++....+|    +++++++|.  ..++|++|||+||..+|.+...              |+. .|++...+|
T Consensus        26 ~~~~~YG~D~~~~~~e----~~~ae~~g~--~a~~Fv~sGT~aN~lal~~~~~--------------~~~-~vi~~~~aH   84 (342)
T COG2008          26 VGDDVYGEDPTTNALE----QRIAELFGK--EAALFVPSGTQANQLALAAHCQ--------------PGE-SVICHETAH   84 (342)
T ss_pred             cCCCCCCCCHHHHHHH----HHHHHHhCC--ceEEEecCccHHHHHHHHHhcC--------------CCC-eEEEecccc
Confidence            3345666666655555    558899998  4699999999999999998875              545 888999999


Q ss_pred             hhHHHH--HHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHH-HCCCccEEEEeccCCCccccccC---hHHHHHHHHH
Q psy12303        179 YSVRSC--AAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERK-AKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQK  252 (480)
Q Consensus       179 ~s~~~~--~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~-~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~  252 (480)
                      .....+  ...++-+  ..+.+...++|.+++++++..|+++- ....+|.+++.+.. |..|++.|   |++|.++||+
T Consensus        85 i~~~E~Ga~~~~~~~--~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~-te~GtVy~l~el~~i~~~~k~  161 (342)
T COG2008          85 IYTDECGAPEFFGGG--QKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTA-TEGGTVYPLDELEAISAVCKE  161 (342)
T ss_pred             ceecccCcHHHHcCC--ceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeecc-CCCceecCHHHHHHHHHHHHH
Confidence            877653  3444422  22233334689999999999998632 22344555666555 58899977   5677888999


Q ss_pred             cCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCc
Q psy12303        253 YNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDV  332 (480)
Q Consensus       253 ~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  332 (480)
                      +|+.||+|||--+..+......  ...-...+|++++++.|.++.|  .|.+++.+.++...+......+-  +      
T Consensus       162 ~~l~LHmDGAR~~nA~valg~~--~~~~~~~~D~v~~~~tK~g~~~--~gAiv~gn~~~~~~a~~~rK~~G--g------  229 (342)
T COG2008         162 HGLPLHMDGARLANALVALGVA--LKTIKSYVDSVSFCLTKGGGAP--VGAIVFGNRDFAKRARRWRKRAG--G------  229 (342)
T ss_pred             hCCceeechHHHHHHHHHcCCC--HHHHHhhCCEEEEecccCCcce--eeeEEEcCHHHHHHHHHHHHHhc--c------
Confidence            9999999997655444221100  1111128999999999999975  45666677776654321111110  0      


Q ss_pred             ccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCC
Q psy12303        333 RYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNM  412 (480)
Q Consensus       333 ~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~  412 (480)
                                +-|..+.+++ ..+-.+...-.....+|..++++.|.+.+.+ .||+++..+++.+++..+. +.     
T Consensus       230 ----------l~~k~r~laA-~~~~~l~~~~~~~~~~Han~mA~~La~~~~~-~~G~~~~~~~~tN~vf~~l-~~-----  291 (342)
T COG2008         230 ----------LMRKARFLAA-QGLYALEDDVWRLAADHANAMAARLAEGLEA-KPGVKLAFPVETNMVFVRL-PE-----  291 (342)
T ss_pred             ----------cHhhhhHHHH-HHHHHHhccHHHHHHHHHHHHHHHHHHhhhh-cCCceeccCCcccEEEEEC-Ch-----
Confidence                      0000111111 1112222333556667778889999999997 7999998777777665532 21     


Q ss_pred             chhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcc-cEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        413 PHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLP-NFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       413 ~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~-~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                                    ...+.+...|..+... .+.+.. ..+|++ +++.++++||+.++..+++++
T Consensus       292 --------------~~i~~l~~~~~~~~~~-~~~~~~~~~vRfv-ts~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         292 --------------SAIEALRLAGALFYRG-VLIGAHGEIVRFV-TSWATSEEDVDELVAAIKALL  341 (342)
T ss_pred             --------------HHHHHHHhhchhheee-eeccCCCceEEEE-eeccCCHHHHHHHHHHHHHhh
Confidence                          1124455555443331 222212 379999 999999999999999998864

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.92  E-value=1.7e-22  Score=197.72  Aligned_cols=301  Identities=14%  Similarity=0.088  Sum_probs=198.1

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCe
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNC  195 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v  195 (480)
                      ++++.+++++|.+  .+++++|||+|+..++.++...             ||+ .|+++..+|.+...++...|.   ++
T Consensus        22 ~~~~~la~~~~~~--~~~~~~sgt~al~~~l~~l~~~-------------~gd-~vl~~~~~~~~~~~~~~~~g~---~~   82 (352)
T cd00616          22 EFEKAFAEYLGVK--YAVAVSSGTAALHLALRALGIG-------------PGD-EVIVPSFTFVATANAILLLGA---TP   82 (352)
T ss_pred             HHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHcCCC-------------CCC-EEEeCCcchHHHHHHHHHcCC---eE
Confidence            4555688888875  4889999999999998776321             445 899999999999999998888   78


Q ss_pred             EEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccccccc
Q psy12303        196 VEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYR  274 (480)
Q Consensus       196 ~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~  274 (480)
                      +.+++++ ++.+|+++|+++++++      +++|++++   ++|.+.|+++|.++|+++|+++++|++|+.+......  
T Consensus        83 ~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~--  151 (352)
T cd00616          83 VFVDIDPDTYNIDPELIEAAITPR------TKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGR--  151 (352)
T ss_pred             EEEecCCCcCCcCHHHHHHhcCcC------CeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCE--
Confidence            8999887 7899999999988654      78888765   5899999999999999999999999999977653321  


Q ss_pred             CcccCCCCCCccceeCc--cccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHH
Q psy12303        275 HPRLTGIERADSVTWNP--HKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL  352 (480)
Q Consensus       275 ~~~~~~~~~~D~~~~s~--hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~  352 (480)
                        .+ +. ..|+.++|+  +|++++| ..|++++++++..................    .+....  ...+.+...+.+
T Consensus       152 --~~-~~-~~d~~~~S~~~~K~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~a  220 (352)
T cd00616         152 --KV-GT-FGDAGAFSFHPTKNLTTG-EGGAVVTNDEELAERARLLRNHGRDRDRF----KYEHEI--LGYNYRLSEIQA  220 (352)
T ss_pred             --Ec-cc-CcceeEEcCCCCCCCccc-CceEEEECCHHHHHHHHHHHHcCCCCCCC----ccccce--eeeccCcCHHHH
Confidence              01 11 246666665  5999643 34667766655544322111000000000    000111  111112233333


Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc-----eeEEEEEeecCccCCCchhhHHHHhhhhhHH
Q psy12303        353 WLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE-----MVNVSFWYLPTRVRNMPHEKRLNILGEITPI  427 (480)
Q Consensus       353 ~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~-----~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~  427 (480)
                      +..+.  ..+++++..++.+++++++.+.|++ ++|++++.++.     ...++|...+.  .+.+           ..+
T Consensus       221 a~~~~--~l~~~~~~~~~~~~~~~~~~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----------~~~  284 (352)
T cd00616         221 AIGLA--QLEKLDEIIARRREIAERYKELLAD-LPGIRLPDVPPGVKHSYHLYVIRLDPE--AGES-----------RDE  284 (352)
T ss_pred             HHHHH--HHHhhHHHHHHHHHHHHHHHHHhcC-CCCccCCCCCCCCceeeEEEEEEECCc--CCCC-----------HHH
Confidence            33333  3566788889999999999999999 89999875432     23444443210  0111           245


Q ss_pred             HHHHHHhcccEEEe---eeeeC------------Cc-------ccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        428 LKGRMMQAGTMMVG---YQPLN------------DL-------PNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       428 i~~~l~~~g~~~~~---~~~~~------------~~-------~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                      +.+.|.+.|+....   +....            +.       ...+|++ +++++|++||++++++|+
T Consensus       285 v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~-~~~~~t~~di~~i~~~l~  352 (352)
T cd00616         285 LIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLP-LHPSLTEEEIDRVIEALR  352 (352)
T ss_pred             HHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEcc-CCCCCCHHHHHHHHHHhC
Confidence            66777777753211   10000            00       2589999 999999999999999874

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.92  E-value=3.4e-22  Score=199.30  Aligned_cols=319  Identities=13%  Similarity=0.064  Sum_probs=211.6

Q ss_pred             chhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchh
Q psy12303        103 TYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS  180 (480)
Q Consensus       103 ~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s  180 (480)
                      .|....+..++.+.+.+++....|.  ++.++++|+|+|+|+.+++.+..+              ||+ .|+++.+.|+.
T Consensus        89 ~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~~--------------~Gd-~Vlv~~P~y~~  153 (430)
T PLN00145         89 SYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQ--------------PGA-NILLPRPGYPL  153 (430)
T ss_pred             CCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhcC--------------CCC-EEEEcCCCCcc
Confidence            4555556677777877777665554  567899999999999998887753              556 78899999999


Q ss_pred             HHHHHHHcCCCCCCeEEeeCC--CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCc
Q psy12303        181 VRSCAAVCGLGTDNCVEVPSD--KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNM  255 (480)
Q Consensus       181 ~~~~~~~~g~~~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~  255 (480)
                      +...+...|.   +++.+++.  .++.+|+++|++.++++      ++++++++|+||||.+.+   +++|.++|+++|+
T Consensus       154 y~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i  224 (430)
T PLN00145        154 YEARAVFSGL---EVRHFDLLPERGWEVDLEGVEALADEN------TVAMVIINPNNPCGSVYSYEHLAKIAETARKLGI  224 (430)
T ss_pred             HHHHHHHcCC---EEEEeeCCcccCCcCCHHHHHHHhCcC------ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            8888888888   77777763  35789999999988765      889999999999999987   7888999999999


Q ss_pred             EEEeeccccccccccccccC-cccCCCCCCccceeCccccCCCc-ccceEEEEeCch-hhHhh--hcCCccccccccccc
Q psy12303        256 WLHVDAAWGGGLLLSKKYRH-PRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDG-LLISC--NQMSAEYLFMQDKLY  330 (480)
Q Consensus       256 ~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~-~~~~~--~~~~~~~l~~~~~~~  330 (480)
                      ++++|++|+...+....... ..+... ..-+++.|++|.++.| ..+|+++..++. .+...  ......+....    
T Consensus       225 ~ii~De~Y~~~~~~~~~~~~~~~~~~~-~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~~~----  299 (430)
T PLN00145        225 LVIADEVYDHLTFGSKPFVPMGVFGEV-APVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNIS----  299 (430)
T ss_pred             EEEEeccchhhccCCCCccchhhhccc-CcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhccc----
Confidence            99999999876542211110 001111 1235566899996555 789999875432 22110  00000000000    


Q ss_pred             CcccCCCCccccCCCCCCchHHHHHHHHh---cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecC
Q psy12303        331 DVRYDTGDKVIQCGRHNDIFKLWLQWRAK---GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPT  407 (480)
Q Consensus       331 ~~~~~~~~~~~~~~r~~~~l~~~~~l~~~---g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~  407 (480)
                                  .  ....+...+....+   ..+.+++.++..++.++.+.+.|++ ++++.....|+.+++.|...+.
T Consensus       300 ------------~--~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~g~~~~~~P~ga~y~~v~l~~  364 (430)
T PLN00145        300 ------------T--DPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKE-IKCITCPHKPEGSMFVMVKLDL  364 (430)
T ss_pred             ------------C--CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCcCCCeeeEEEeccCh
Confidence                        0  01122222222222   2456788888889999999999999 8888765568888777654432


Q ss_pred             c-cCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        408 R-VRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       408 ~-~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      . ..+...          ..++..++.++..+++.++...+..+++|+++.   .+.++++..+++|.++++
T Consensus       365 ~~~~~~~~----------~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~---~~~~~l~~al~rl~~~~~  423 (430)
T PLN00145        365 SCLSGIKD----------DMDFCCKLAKEESVVVLPGSALGMKNWLRITFA---IDPPSLEDGLERLKSFCL  423 (430)
T ss_pred             hhcCCCCC----------HHHHHHHHHHhCCEEEeCccccCCCCeEEEEeC---CCHHHHHHHHHHHHHHHH
Confidence            1 001000          123445555443344444444444789999954   378999999999988764

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.92  E-value=7.9e-23  Score=215.99  Aligned_cols=359  Identities=14%  Similarity=0.075  Sum_probs=238.7

Q ss_pred             HHHHHHhcCCCCCC--CCCCHHHHHHHHHhhccCCccCCCCCccccccCCC----ChHHhHHHHHHHH---cCcCCcchh
Q psy12303         35 PAEMKAMLDLDIPE--KGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGL----DVVSMAGEWLIAT---ANTNMFTYE  105 (480)
Q Consensus        35 p~~~~~~~~~~~p~--~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~----~~~~~~~~~l~~~---~~~~~~~~~  105 (480)
                      |..++. .+.++|+  ++.+..++++.++++...+..     |++|...+.    .|+.++..++...   ..-.++..+
T Consensus        68 P~~i~~-~~l~lp~~~~~~sE~e~~~~~~~la~kN~~-----~~~fiG~G~y~~~~P~~v~~~i~~~~~~~TaytPYqaE  141 (993)
T PLN02414         68 PKSIRL-DSMKLSKYDEGLTESQMLEHMKSLASKNKV-----FKSYIGMGYYNTHVPPVILRNILENPGWYTQYTPYQAE  141 (993)
T ss_pred             CHHHhc-CCCCCCCCCCCCCHHHHHHHHHHHHhcCCc-----cccccCCCCCCccCCHHHHHHHHhChHHHhhcCCCchH
Confidence            444522 2456672  477899999999888665432     444444444    4444444444321   111233334


Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA  185 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~  185 (480)
                      .+++..+.-.+...++++++|++.+++.++.++|.+...++++.+..       .|    + +.+|++++..|++...++
T Consensus       142 isQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~-------~g----~-~~~VlVs~~~hP~~~~v~  209 (993)
T PLN02414        142 IAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNIL-------KG----K-KKKFLIASNCHPQTIDVC  209 (993)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhcc-------cC----C-CCEEEEcCccCHhHHHHH
Confidence            55666676778899999999999999999999999888776655432       11    1 237999999999988777


Q ss_pred             HHc----CCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeec
Q psy12303        186 AVC----GLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDA  261 (480)
Q Consensus       186 ~~~----g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~  261 (480)
                      +..    |+   +++.+|.+..   +      ...+.      +..+++..+ +.+|.+.|+++|+++|+++|++++| +
T Consensus       210 ~t~a~~~Gi---eV~~v~~~~~---~------~~~~~------v~~vlvq~P-~~~G~v~dv~~I~~~ah~~GaL~iV-a  269 (993)
T PLN02414        210 QTRADGLGL---EVVVADEKDF---D------YSSGD------VCGVLVQYP-ATDGEVLDYAEFVKNAHANGVKVVM-A  269 (993)
T ss_pred             HHhhhhcCC---EEEEecchhh---c------cccCc------eEEEEEecC-CCCeEEcCHHHHHHHHHHcCCEEEE-E
Confidence            554    44   7888876421   1      11112      556666566 6799999999999999999999999 8


Q ss_pred             ccccccccc-ccccCcccCCCCCCccceeCccccC-----CCcccceEEEEeCchhhHhhhcCCcccccccccccC----
Q psy12303        262 AWGGGLLLS-KKYRHPRLTGIERADSVTWNPHKLM-----GTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYD----  331 (480)
Q Consensus       262 a~~~~~~~~-~~~~~~~~~~~~~~D~~~~s~hK~~-----~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----  331 (480)
                      |+..+.... +...+       ++|+++.++|||+     ++|. .|++++++.. .+.    .++.+.+......    
T Consensus       270 ad~lal~~l~~pge~-------GADi~vgsgqKwg~P~G~GGP~-aGflavr~~~-~r~----~PgriVG~s~d~~g~~~  336 (993)
T PLN02414        270 TDLLALTMLKPPGEW-------GADIVVGSAQRFGVPMGYGGPH-AAFLATSQEY-KRL----MPGRIIGVSVDSSGKPA  336 (993)
T ss_pred             ECHHHhcCCCCHhhc-------cCcEEEECCCccccCCCCCCCC-eeEEEECHHH-Hhh----CCCcccCcccCCCCCcc
Confidence            887776655 34445       9999999999998     4444 7999988753 222    2211111100000    


Q ss_pred             -----------cccCCCCccccCCCCCCchHHHHHH-----HHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC
Q psy12303        332 -----------VRYDTGDKVIQCGRHNDIFKLWLQW-----RAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP  395 (480)
Q Consensus       332 -----------~~~~~~~~~~~~~r~~~~l~~~~~l-----~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~  395 (480)
                                 .+++.++.++     ....++++.+     ..+|..|++++.++...++.++++.|.+  +|+++..++
T Consensus       337 ~~l~LqtReqhiRrEkaTsNi-----ct~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~--~G~~~~~~~  409 (993)
T PLN02414        337 LRMAMQTREQHIRRDKATSNI-----CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKK--LGFQVQSLP  409 (993)
T ss_pred             cccccccccchhhhcccccch-----hHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhh--cCCccCCCC
Confidence                       0111111111     1122333333     3458899999999999999999999988  789988777


Q ss_pred             ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        396 EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       396 ~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                      .+..++|...  .                ..++.++|.++|+. +...  .  .+.+|+| ++..+|++|||.+++.|..
T Consensus       410 ~f~~vt~~~~--~----------------~~~v~~~L~~~gI~-l~~~--~--~~~lrvs-~~e~~T~edId~L~~~l~~  465 (993)
T PLN02414        410 FFDTVKVKCS--D----------------ADAIADAAAKVGIN-LRVV--D--ANTVTVS-FDETTTLEDVDKLFKVFAG  465 (993)
T ss_pred             CcCeEEEecC--C----------------HHHHHHHHHHCCCe-eEEe--c--CCeEEEE-eeccCCHHHHHHHHHHHcc
Confidence            7888888641  1                24677888888853 2221  1  3579999 9999999999999999964

>PLN02187 rooty/superroot1

Probab=99.92  E-value=5.4e-22  Score=199.16  Aligned_cols=318  Identities=11%  Similarity=0.051  Sum_probs=210.9

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHhC--CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCch
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQIIG--WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHY  179 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~  179 (480)
                      ..|....+...+.+.+++++.+.+|  ++++++++|+|+++|+..++.+..+              ||+ .|+++.++|+
T Consensus       102 ~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~--------------pGd-~Vlv~~P~y~  166 (462)
T PLN02187        102 NSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLAR--------------PNA-NILLPRPGFP  166 (462)
T ss_pred             CCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhcC--------------CCC-EEEEeCCCCc
Confidence            4455566667788888888877655  4678999999999999999887754              556 7888899999


Q ss_pred             hHHHHHHHcCCCCCCeEEeeCC--CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcC
Q psy12303        180 SVRSCAAVCGLGTDNCVEVPSD--KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYN  254 (480)
Q Consensus       180 s~~~~~~~~g~~~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~  254 (480)
                      .+...+...|+   +++.++..  +++.+|+++|++++++.      +++|++++|+||||.+.+   +++|.++|++||
T Consensus       167 ~y~~~~~~~g~---~~~~~~l~~~~~~~~d~~~l~~~~~~~------~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~  237 (462)
T PLN02187        167 HYDARAAYSGL---EVRKFDLLPEKEWEIDLEGIEAIADEN------TVAMVVINPNNPCGNVYSHDHLKKVAETARKLG  237 (462)
T ss_pred             cHHHHHHHcCC---EEEEEeCccccCCccCHHHHHHhcCCC------cEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCC
Confidence            99888998888   77888874  45889999999888654      789999999999999976   788999999999


Q ss_pred             cEEEeeccccccccccccccC-cccCCCCCCccceeCccccCCCc-ccceEEEEeCch-hh---HhhhcCCccccccccc
Q psy12303        255 MWLHVDAAWGGGLLLSKKYRH-PRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDG-LL---ISCNQMSAEYLFMQDK  328 (480)
Q Consensus       255 ~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~-~~---~~~~~~~~~~l~~~~~  328 (480)
                      +++++|++|+...+....+.. ..+... .--+++.|++|.++.| ..+|+++..++. .+   .........+-..   
T Consensus       238 i~iI~DE~Y~~l~f~~~~~~s~~~~~~~-~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~---  313 (462)
T PLN02187        238 IMVISDEVYDRTIFGDNPFVSMGKFASI-VPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVT---  313 (462)
T ss_pred             CEEEEeccccccccCCCCceeHHHhccC-CcEEEEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHHHhcccc---
Confidence            999999999886542211100 011111 1124556899996655 789999875442 11   1111111111000   


Q ss_pred             ccCcccCCCCccccCCCCCCchHHHHHHHHh---cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEee
Q psy12303        329 LYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK---GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYL  405 (480)
Q Consensus       329 ~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~---g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~  405 (480)
                                    .  ....+...+....+   ..+.+++..+...+.++.+.+.|++ ++++..+..|..++++|.-.
T Consensus       314 --------------~--~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~-~~~~~~~~~P~gg~fl~~~l  376 (462)
T PLN02187        314 --------------P--DPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKD-IPCVVCPKKPESCTYLLTKL  376 (462)
T ss_pred             --------------C--CCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh-CCCCcCCCCCCEeEEEEeec
Confidence                          0  01122222222222   3456788888888899999999999 76654344677777777533


Q ss_pred             cCcc-CCCchhhHHHHhhhhhHHHH-HHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        406 PTRV-RNMPHEKRLNILGEITPILK-GRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       406 ~~~~-~~~~~~~~~~~l~~~~~~i~-~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      +... .+...          ..++. ..+.+.|+++.....+ +..+++|+++.   +.++.++..+++|.++++
T Consensus       377 ~~~~~~~~~~----------~~~~~~~ll~~~gV~v~pG~~f-g~~~~iRis~~---~~~e~l~~al~rL~~~l~  437 (462)
T PLN02187        377 ELSLMDNIKD----------DIDFCVKLAREENLVFLPGDAL-GLKNWMRITIG---VEAHMLEDALERLKGFCT  437 (462)
T ss_pred             ChhhCCCCCC----------HHHHHHHHHhhCCEEEECcccc-CCCCeEEEEeC---CCHHHHHHHHHHHHHHHH
Confidence            2110 11000          11233 3445677554443333 33689999954   358999999999988765

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.92  E-value=5.8e-22  Score=196.38  Aligned_cols=313  Identities=13%  Similarity=0.030  Sum_probs=215.1

Q ss_pred             hhhHHHHHHHHHHHHHHhCCC---CC-CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHH
Q psy12303        108 PVFILMETVVLEKMRQIIGWQ---GG-DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS  183 (480)
Q Consensus       108 ~~~~~~e~~~~~~la~~~g~~---~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~  183 (480)
                      .+...+.+.+++++.+.+|.+   +. ++++|+|+++++..++.+..+              ||+ .|+++.++|+.+..
T Consensus        81 ~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~~--------------~gd-~Vlv~~P~y~~~~~  145 (410)
T PRK06290         81 NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFIN--------------PGD-VTLMTVPGYPVTGT  145 (410)
T ss_pred             CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhCC--------------CCC-EEEEeCCCCccHHH
Confidence            566788888888888877743   44 799999999999888876654              556 78888899999999


Q ss_pred             HHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCcEEE
Q psy12303        184 CAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMWLH  258 (480)
Q Consensus       184 ~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~  258 (480)
                      .++..|.   +++.+|.++  ++.+|++++++++.+.      +++|++++|+||||.+.+   +++|.++|++||++|+
T Consensus       146 ~~~~~g~---~v~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI  216 (410)
T PRK06290        146 HTKYYGG---EVYNLPLLEENNFLPDLDSIPKDIKEK------AKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVV  216 (410)
T ss_pred             HHHHcCC---EEEEEecCCCcCCcCCHHHHHHhhccc------ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEE
Confidence            9999988   889999875  3678999999888654      889999999999999987   6788888999999999


Q ss_pred             eeccccccccccccccCcccCCCCCCccceeCccccCCC-cccceEEEEeCchhhHhhhcCCcccccccccccCcccCCC
Q psy12303        259 VDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGT-LLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       259 vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  337 (480)
                      +|++|+...........-.+.+....++++.|++|.++. +..+|+++. ++..+.........+...            
T Consensus       217 ~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~-~~~l~~~l~~~~~~~~~~------------  283 (410)
T PRK06290        217 QDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVG-NELIVKAFATVKDNNDSG------------  283 (410)
T ss_pred             EecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhheEeEEe-CHHHHHHHHHHHhccccC------------
Confidence            999999765321110000111222456888899999964 467898885 444444332111111100            


Q ss_pred             CccccCCCCCCchHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccC-CCchh
Q psy12303        338 DKVIQCGRHNDIFKLWLQWRAKG-DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVR-NMPHE  415 (480)
Q Consensus       338 ~~~~~~~r~~~~l~~~~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~-~~~~~  415 (480)
                               ...+...++...+. .+.+++..++..+.++++.+.|++ . |+.+. +|+.+.+.|...|.... +... 
T Consensus       284 ---------~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~p~g~f~l~v~lp~~~~~~~~~-  350 (410)
T PRK06290        284 ---------QFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNE-V-GFKAE-MPGGTFYLYVKAPKGTKSGIKF-  350 (410)
T ss_pred             ---------CcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHh-C-CCeec-CCCeeeEEEEECCCccccCCCC-
Confidence                     01112222222221 234566777788889999999999 4 88764 57777666644443211 0000 


Q ss_pred             hHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       416 ~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                           .  -..++.++|.++|.+++.+....  .+++|++++.+..++++.++++++|++.+.+
T Consensus       351 -----~--~~~~~~~~Ll~~~~v~~~p~~~~--~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~  405 (410)
T PRK06290        351 -----E--NAEEFSQYLIKEKLISTVPWDDA--GHFLRFSVTFEAKDEEEEDRILEEIKRRLSD  405 (410)
T ss_pred             -----C--CHHHHHHHHHHhCCEEEECCccc--cCeEEEEEEcccccccchhHHHHHHHHHHhh
Confidence                 0  02457788888886665442222  3699999888888999999999999987653

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.92  E-value=3.5e-22  Score=201.45  Aligned_cols=322  Identities=12%  Similarity=0.124  Sum_probs=213.4

Q ss_pred             hhcChhhHHHHHHHHHHHHHHhC----CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCch
Q psy12303        104 YEIAPVFILMETVVLEKMRQIIG----WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHY  179 (480)
Q Consensus       104 ~~~~~~~~~~e~~~~~~la~~~g----~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~  179 (480)
                      |....+..++.+++++++.+.+|    ++++++++|+|+++|+..++.+..+              ||+ .|+++.++|+
T Consensus        90 y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~--------------pGD-~Vlv~~P~Y~  154 (496)
T PLN02376         90 FQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLAD--------------PGD-VFLIPSPYYA  154 (496)
T ss_pred             cCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCC--------------CCC-EEEECCCCcc
Confidence            44445567788888899988877    6778999999999999999988765              666 8999999999


Q ss_pred             hHHHHHHH-cCCCCCCeEEeeCC--CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHc
Q psy12303        180 SVRSCAAV-CGLGTDNCVEVPSD--KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKY  253 (480)
Q Consensus       180 s~~~~~~~-~g~~~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~  253 (480)
                      .+...+.. .|+   +++.||++  +++.+|+++++++++...+.+.++++|++++|+||||.+.+   +++|.++|++|
T Consensus       155 ~~~~~~~~~~G~---~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~  231 (496)
T PLN02376        155 AFDRDLRWRTGV---EIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRK  231 (496)
T ss_pred             chHHHHHhhCCC---EEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHc
Confidence            99887774 687   88999985  35789999999888665544566899999999999999977   67788889999


Q ss_pred             CcEEEeeccccccccccccccC--cccCC--CC--CCc--cceeCccccCC-CcccceEEEEeCchhhHhhhcCCccccc
Q psy12303        254 NMWLHVDAAWGGGLLLSKKYRH--PRLTG--IE--RAD--SVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLF  324 (480)
Q Consensus       254 ~~~l~vD~a~~~~~~~~~~~~~--~~~~~--~~--~~D--~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~  324 (480)
                      ++++++|++|+...+..+.+..  .....  ..  ..+  .++.|++|.++ .+..+|+++..+........... .+. 
T Consensus       232 ~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~-~~~-  309 (496)
T PLN02376        232 NIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMS-SFG-  309 (496)
T ss_pred             CCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHh-hcC-
Confidence            9999999999986543221111  01110  00  112  24679999997 44889999976554443321111 110 


Q ss_pred             ccccccCcccCCCCccccCCCCCCchHHHHHHHHhcH-----HHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeE
Q psy12303        325 MQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGD-----EGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVN  399 (480)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~-----~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~  399 (480)
                      .                     ...+...+....+..     +.+.+..++..+..+.+.+.|.+  .|++++ +|..+.
T Consensus       310 ~---------------------vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~--~gi~~~-~~~aG~  365 (496)
T PLN02376        310 L---------------------VSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKK--ADIACL-TSNAGL  365 (496)
T ss_pred             C---------------------CCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCccc-CCCceE
Confidence            0                     112233333333322     22334456667777888888888  477764 577777


Q ss_pred             EEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCC--cccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        400 VSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLND--LPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       400 v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~--~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      ++|...+......  ..+..     ..++.+.+.++..+.+.++...+  ..+++|++|.+  .++++++..+++|++++
T Consensus       366 flwi~l~~~~~~~--~~~~~-----e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~--~~~~~l~~al~rl~~~l  436 (496)
T PLN02376        366 FAWMDLRHLLRDR--NSFES-----EIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFAN--MDDDTLHVALGRIQDFV  436 (496)
T ss_pred             EEEEEchhhhccC--CchhH-----HHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeC--CCHHHHHHHHHHHHHHH
Confidence            7775544322110  00000     13466767665334455433322  25799999653  35799999999998876


Q ss_pred             c
Q psy12303        478 H  478 (480)
Q Consensus       478 ~  478 (480)
                      +
T Consensus       437 ~  437 (496)
T PLN02376        437 S  437 (496)
T ss_pred             H
Confidence            3

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.92  E-value=9e-23  Score=177.34  Aligned_cols=310  Identities=16%  Similarity=0.236  Sum_probs=224.4

Q ss_pred             HHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeE
Q psy12303        117 VLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCV  196 (480)
Q Consensus       117 ~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~  196 (480)
                      ..+.+++++|++.  +-+|.|+-+|-+.+|.+.+.              +|+ .|+++..+||+..-+++..|+   +|.
T Consensus        66 F~~dlaeFlg~D~--~R~t~GARe~KfavMhal~~--------------~gd-~vV~D~~aHYttyvAAEragl---~v~  125 (382)
T COG1103          66 FLEDLAEFLGMDE--VRVTAGAREAKFAVMHALCK--------------EGD-WVVVDSLAHYTTYVAAERAGL---NVA  125 (382)
T ss_pred             HHHHHHHHhCCce--eeecccchhhHHHHHHHhcc--------------CCC-EEEEcCcchHHHHHHHHhcCC---eEE
Confidence            3455999999987  89999999999999988876              345 899999999999999999999   889


Q ss_pred             EeeCC--CCCCCCHHHHHHHHHHHHHCC-CccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccc
Q psy12303        197 EVPSD--KRGRLIPSELERLVLERKAKG-DIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       197 ~v~~~--~~~~~d~~~L~~~i~~~~~~~-~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~  273 (480)
                      .||..  +++.++++...+.|++.++++ ..|.+.++|++....|.+.|.+.++++|+++|+++++.+||..+.++....
T Consensus       126 eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~k  205 (382)
T COG1103         126 EVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGK  205 (382)
T ss_pred             ecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeecccccccc
Confidence            99964  368999999999999987764 779999999999999999999999999999999999999999999877765


Q ss_pred             cCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC-CchHH
Q psy12303        274 RHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN-DIFKL  352 (480)
Q Consensus       274 ~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~-~~l~~  352 (480)
                      ..       ++|+++.|+||.+.+..++|++-++.+ +.......+..+....+.+          -+.|+.+. ..+.+
T Consensus       206 e~-------g~DFiVgSGHKsmAAs~PiGvl~~~eE-~ae~V~r~Sg~~~~~KEve----------llGCT~rGapivTl  267 (382)
T COG1103         206 EI-------GADFIVGSGHKSMAASAPIGVLAMSEE-WAEIVLRRSGRAFPKKEVE----------LLGCTVRGAPIVTL  267 (382)
T ss_pred             cc-------CCCEEEecCccchhccCCeeEEeehhH-HHHHHHhhcccccccceee----------eecccccCchHHHH
Confidence            55       999999999999999899999998654 3333332221222111111          13355443 33344


Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHH
Q psy12303        353 WLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGR  431 (480)
Q Consensus       353 ~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~  431 (480)
                      .+++-.. .+. -.+.+.-.+.+++|.+.|++ +-|+..++. |...-..+ |..+.+.     +..+.-..-.--+++.
T Consensus       268 mASfP~V-~eR-VkrWdeEv~kaR~fv~elEk-igg~~qlG~rPk~HdLm~-Fetp~f~-----eIakk~~r~gyFlY~E  338 (382)
T COG1103         268 MASFPHV-VER-VKRWDEEVEKARWFVAELEK-IGGVKQLGERPKNHDLMK-FETPVFH-----EIAKKHKRKGYFLYEE  338 (382)
T ss_pred             HhcCHHH-HHH-HHHHHHHHHHHHHHHHHHHH-hhhHHHhCCCCcccceee-ecCchHH-----HHHHhCcCCceeeHHH
Confidence            4443331 222 34445667789999999999 877887763 43333332 2211110     1100000001135677


Q ss_pred             HHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        432 MMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       432 l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      |.++|+.-+.+    |...++.+|+  +..+.|+++++++++++++++
T Consensus       339 LK~RgI~GI~~----G~Tk~~K~sv--yGl~~Eqve~V~~afkeI~ek  380 (382)
T COG1103         339 LKKRGIHGIQP----GQTKYFKLSV--YGLSWEQVEYVVDAFKEIAEK  380 (382)
T ss_pred             HHhcCcccccc----CceeEEEEEe--ecCCHHHHHHHHHHHHHHHHh
Confidence            88888654444    3356889883  677999999999999999875

>PRK07682 hypothetical protein; Validated

Probab=99.92  E-value=3.5e-22  Score=197.10  Aligned_cols=312  Identities=12%  Similarity=0.111  Sum_probs=214.6

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHhCC--CC-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCc
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQIIGW--QG-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH  178 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~g~--~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h  178 (480)
                      ..|...++...+.+++.+++.+.+|.  ++ .++++|+|+++|+..++.+..+              ||+ .|+++.++|
T Consensus        51 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~--------------~gd-~vl~~~p~y  115 (378)
T PRK07682         51 TSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIIN--------------PGD-EVLIVEPSF  115 (378)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCC--------------CCC-EEEEeCCCc
Confidence            44655677788999999999888776  34 3799999999999988877654              556 788889999


Q ss_pred             hhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHc
Q psy12303        179 YSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKY  253 (480)
Q Consensus       179 ~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~  253 (480)
                      +.+...++..|.   +++.++.+.  ++.+|+++|++++.+.      +++|++++|+||||.+.+   +++|.++|++|
T Consensus       116 ~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~  186 (378)
T PRK07682        116 VSYAPLVTLAGG---VPVPVATTLENEFKVQPAQIEAAITAK------TKAILLCSPNNPTGAVLNKSELEEIAVIVEKH  186 (378)
T ss_pred             hhhHHHHHHcCC---EEEEeecCCccCCCCCHHHHHhhcCcc------cEEEEEECCCCCcCcCcCHHHHHHHHHHHHHc
Confidence            999888888887   677888753  5789999999988764      889999999999999865   88999999999


Q ss_pred             CcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCC-cccceEEEEeCchhhHhhhcCCcccccccccccCc
Q psy12303        254 NMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGT-LLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDV  332 (480)
Q Consensus       254 ~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  332 (480)
                      ++++++|++|+.+....+......+.+...-.+++.|++|.++. +..+|+++.. ++.++...... .+..        
T Consensus       187 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~-~~~i~~l~~~~-~~~~--------  256 (378)
T PRK07682        187 DLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAP-VYFSEAMLKIH-QYSM--------  256 (378)
T ss_pred             CcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcC-HHHHHHHHHHH-Hhhc--------
Confidence            99999999999776422110000122222345778899999984 4678998864 44444332111 0100        


Q ss_pred             ccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecC-cc
Q psy12303        333 RYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPT-RV  409 (480)
Q Consensus       333 ~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~-~~  409 (480)
                            +      ....+...++...+  +...+++..++..+.++++.+.|++ . ++++ ..|..+.+.|...+. ..
T Consensus       257 ------~------~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~-~~p~g~~~~~~~~~~~~~  321 (378)
T PRK07682        257 ------M------CAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNE-I-GLTC-HVPGGAFYAFPSISSTGL  321 (378)
T ss_pred             ------c------CCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH-C-CCcc-CCCCeeEEEEEeccCCCC
Confidence                  0      01222333333333  4455677788888999999999999 4 7775 457777666643321 11


Q ss_pred             CCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        410 RNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       410 ~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .              ..++.+.+. +.|+.+.....+.. ..+++|+++.   ++++++++.+++|++++++
T Consensus       322 ~--------------~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~---~~~~~l~~~l~~l~~~l~~  376 (378)
T PRK07682        322 S--------------SEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYA---TSLEQLQEAMKRMKRFVEN  376 (378)
T ss_pred             C--------------HHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeC---CCHHHHHHHHHHHHHHHhh
Confidence            1              134566655 56754443222211 1579999954   3689999999999998765

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=8.6e-22  Score=192.11  Aligned_cols=288  Identities=12%  Similarity=0.109  Sum_probs=201.1

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++.++++++.++.++++|+|+++++..++.+..+              ||+ .|+++.++++.+...++..|.   +
T Consensus        62 ~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~~--------------~gd-~Vlv~~p~y~~~~~~~~~~g~---~  123 (351)
T PRK14807         62 EKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFIN--------------KGD-VVIYPHPSFAMYSVYSKIAGA---V  123 (351)
T ss_pred             HHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhcC--------------CCC-EEEEeCCChHHHHHHHHHcCC---e
Confidence            3566778888899888999999999998888877643              556 788888888888888888888   8


Q ss_pred             eEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccccccc
Q psy12303        195 CVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYR  274 (480)
Q Consensus       195 v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~  274 (480)
                      ++.++.++++.+|++++++++++.     ++++|++++++||||.+.+.+++.++|++++.++++|++|+...   +...
T Consensus       124 ~~~v~~~~~~~~d~~~l~~~~~~~-----~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~---~~~~  195 (351)
T PRK14807        124 EIPVKLKEDYTYDVGSFIKVIEKY-----QPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFY---GNTI  195 (351)
T ss_pred             EEEeecCCCCCCCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhc---ccch
Confidence            889998888899999999998752     28899999999999999999999999999899999999997542   1111


Q ss_pred             CcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHH
Q psy12303        275 HPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLW  353 (480)
Q Consensus       275 ~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~  353 (480)
                      .+..... .-.+++.|++|.++ .+..+|+++. +++...........+.                       ...+...
T Consensus       196 ~~~~~~~-~~vi~~~S~SK~~~~~GlRiG~~v~-~~~~~~~~~~~~~~~~-----------------------~~~~~q~  250 (351)
T PRK14807        196 VDVINEF-ENLIVLRTLSKAFGLAGLRVGYAVA-NENILKYLNLVKSPYN-----------------------INSLSQV  250 (351)
T ss_pred             HHHhhhC-CCEEEEecchHhcccchhceeeeec-CHHHHHHHHHccCCCC-----------------------cCHHHHH
Confidence            0011111 22466779999997 5578899885 4555444332111110                       1122333


Q ss_pred             HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH
Q psy12303        354 LQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM  433 (480)
Q Consensus       354 ~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~  433 (480)
                      +....+....+++.+++..+.++.+.+.|++ .+|+.+. ++... +.+...+ .                ..++.+.|.
T Consensus       251 ~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~-~~g~~~~-~~~~~-~~~i~~~-~----------------~~~~~~~l~  310 (351)
T PRK14807        251 IALKVLRTGVLKERVNYILNERERLIKELSK-IPGIKVY-PSKTN-FILVKFK-D----------------ADYVYQGLL  310 (351)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-CCCcEEC-cCCcc-EEEEEcC-C----------------HHHHHHHHH
Confidence            3333333345677777788888889999988 7898863 45444 3332111 1                135667788


Q ss_pred             hcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        434 QAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       434 ~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      +.|+.+.......+..+++|+++.    +.++.+++++.|++++
T Consensus       311 ~~gV~v~~~~~~~~~~~~iRis~~----~~~~~~~l~~~l~~~~  350 (351)
T PRK14807        311 ERGILVRDFSKVEGLEGALRITVS----SCEANDYLINGLKELL  350 (351)
T ss_pred             HCCEEEEECCCCCCCCCeEEEEcC----CHHHHHHHHHHHHHhh
Confidence            888654433221222579999954    5788999999998753

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.91  E-value=1.9e-22  Score=200.94  Aligned_cols=309  Identities=17%  Similarity=0.147  Sum_probs=194.9

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH-
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC-  184 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~-  184 (480)
                      ..+....+++..++++++++|.+...+ +++|||+|+..++.+..+              ||+ .|+++..+|+++... 
T Consensus        59 ~~~~~~~l~~~~~~~~~~~~g~~~~~v-~~~sgt~a~~~~l~~l~~--------------~Gd-~Vl~~~~~~~~~~~~~  122 (402)
T cd00378          59 GCEYVDEIEDLAIERAKKLFGAEYANV-QPHSGSQANLAVYFALLE--------------PGD-TIMGLDLSHGGHLTHG  122 (402)
T ss_pred             CchHHHHHHHHHHHHHHHHhCCCceee-ecCCcHHHHHHHHHHhcC--------------CCC-EEEEecCccCcccccc
Confidence            445566788778889999999976444 444688999988887753              556 788888888765433 


Q ss_pred             ----HHHcCCCCCCeEEeeCCC---CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEE
Q psy12303        185 ----AAVCGLGTDNCVEVPSDK---RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWL  257 (480)
Q Consensus       185 ----~~~~g~~~~~v~~v~~~~---~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l  257 (480)
                          +...|.   ++..++.+.   ++.+|++++++++.+.     ++++|+++++++  |...|+++|.++|++||+++
T Consensus       123 ~~~~~~~~g~---~~~~~~~~~~~~~~~id~~~l~~~i~~~-----~~~~v~~~~~~~--~~~~~~~~I~~l~~~~~~~l  192 (402)
T cd00378         123 SFTKVSASGK---LFESVPYGVDPETGLIDYDALEKMALEF-----KPKLIVAGASAY--PRPIDFKRFREIADEVGAYL  192 (402)
T ss_pred             ccccccccce---eEEEecCCcCcccCCcCHHHHHHHHHhC-----CCCEEEecCccc--CCCcCHHHHHHHHHhcCCEE
Confidence                344454   555555532   5899999999998642     277888877654  67779999999999999999


Q ss_pred             EeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCC
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  337 (480)
                      ++|++|..+......... .+.   ++|+++.|+||++.+|. .|++++.++...........++....           
T Consensus       193 i~D~a~~~g~~~~g~~~~-~~~---~~dv~~~s~sK~l~G~~-gg~i~~~~~~~~~~l~~~~~~~~~~~-----------  256 (402)
T cd00378         193 LVDMAHVAGLVAGGVFPN-PLP---GADVVTTTTHKTLRGPR-GGLILTRKGELAKKINSAVFPGLQGG-----------  256 (402)
T ss_pred             EEEccchhhhhhcccCCC-ccc---CCcEEEeccccCCCCCC-ceEEEeccHHHHHHHHHHhCccccCC-----------
Confidence            999998655443221111 122   56899999999996654 46666665455444322211111110           


Q ss_pred             CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhH
Q psy12303        338 DKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKR  417 (480)
Q Consensus       338 ~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~  417 (480)
                            .......++..++..+...++.+..++..++++++.+.|.+ . |++++..|..+.+++...+..  +.+    
T Consensus       257 ------~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~v~v~~~~~--~~~----  322 (402)
T cd00378         257 ------PHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKE-R-GFKVVSGGTDNHLVLVDLRPK--GIT----  322 (402)
T ss_pred             ------chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-C-CCeEeecCCCCeEEEEeCCcc--CCC----
Confidence                  00011112222333322235677888899999999999999 5 888764444444444333211  000    


Q ss_pred             HHHhhhhhHHHHHHHHhcccEEEe---eeee--CCcccEEEEecccC----CCCHHHHHHHHHHHHHhhc
Q psy12303        418 LNILGEITPILKGRMMQAGTMMVG---YQPL--NDLPNFFRNIISSA----AVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       418 ~~~l~~~~~~i~~~l~~~g~~~~~---~~~~--~~~~~~~R~~~~~~----~~t~~di~~~~~~l~~~~~  478 (480)
                             ...+.+.|.+.|+.+..   +...  ......+|++ .+.    ..+++||+++++.|+++++
T Consensus       323 -------~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~-~~~~~~~~~~~~di~~~~~~l~~~~~  384 (402)
T cd00378         323 -------GKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIG-TPAMTTRGMGEEEMEEIADFIARALK  384 (402)
T ss_pred             -------HHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEec-CHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence                   12344556667754422   1111  1014689998 444    4579999999999998764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>KOG1368|consensus

Probab=99.91  E-value=6.1e-23  Score=180.80  Aligned_cols=306  Identities=15%  Similarity=0.195  Sum_probs=215.8

Q ss_pred             CcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchh
Q psy12303        101 MFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS  180 (480)
Q Consensus       101 ~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s  180 (480)
                      ...|...|-...+|++    +|+++|-+.  +.|+++||++|+.+++.-+.+             ||. .|++.+.+|..
T Consensus        49 DdVyGeD~tt~rLE~~----vA~l~GKEA--gLFv~SGTmgNllaIm~Hc~~-------------rg~-eii~gd~~HI~  108 (384)
T KOG1368|consen   49 DDVYGEDPTTNRLEQR----VAELFGKEA--GLFVPSGTMGNLLAIMVHCHQ-------------RGS-EIIVGDRAHIH  108 (384)
T ss_pred             cccccCCccHHHHHHH----HHHHhCccc--eeeecccccccHHHHHHHhcC-------------CCc-eEEeccchhee
Confidence            4567778888888888    788888766  999999999999999999875             434 89999999987


Q ss_pred             HHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHH--HCCCccEEEEeccCCCccc-cccCh---HHHHHHHHHcC
Q psy12303        181 VRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERK--AKGDIPFFVNCTSGTTVLG-AFDPI---EEIADICQKYN  254 (480)
Q Consensus       181 ~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~--~~~~~~~~v~~~~~~~~~G-~~~~l---~~I~~i~~~~~  254 (480)
                      .+....+.-+++..++.+...+++.||++++|+++....  -+...+++|++.+-.+.+| .+.||   ++|.++|++||
T Consensus       109 ~~E~gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~g  188 (384)
T KOG1368|consen  109 RYEQGGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHG  188 (384)
T ss_pred             ehhccChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccC
Confidence            776655554444477888888899999999999998543  1356789999999999999 77775   66788899999


Q ss_pred             cEEEeecccccccc---ccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccC
Q psy12303        255 MWLHVDAAWGGGLL---LSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYD  331 (480)
Q Consensus       255 ~~l~vD~a~~~~~~---~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  331 (480)
                      +.+|+|||.-.-+.   -.+..+.     .+.+||+++.++|.+++|.  |-+++.++.++..+......          
T Consensus       189 lkLH~DGARi~NAavasgV~vk~i-----~~~fDSVsiCLSKglgAPV--GSViVG~k~FI~kA~~~RKa----------  251 (384)
T KOG1368|consen  189 LKLHMDGARIFNAAVASGVPVKKI-----CSAFDSVSICLSKGLGAPV--GSVIVGSKDFIDKARHFRKA----------  251 (384)
T ss_pred             CeeecchhhhhhHHHHcCCCHHHH-----HHhhhhhhhhhhccCCCCc--ccEEEccHHHHHHHHHHHHH----------
Confidence            99999997544322   1221111     2378999999999999975  55667788777654321111          


Q ss_pred             cccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-CceeEEEEEeecCccC
Q psy12303        332 VRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-PEMVNVSFWYLPTRVR  410 (480)
Q Consensus       332 ~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~~~~~v~f~~~~~~~~  410 (480)
                               +.+|-|-..+-+.++|-.+ .+. -..++..++.++.+.+.+.+ .+++++-.+ .+.+++........+ 
T Consensus       252 ---------lGGGmRQsGvLaaaaLval-~~~-~~~L~~dHk~A~~lAe~~~~-~~~i~v~v~a~etNiv~~~l~q~~~-  318 (384)
T KOG1368|consen  252 ---------LGGGMRQSGVLAAAALVAL-DEN-VPLLRADHKRAKELAEYINT-PEEIRVEVPAVETNIVNMVLCQARL-  318 (384)
T ss_pred             ---------hcCchhHHHHHHHHHHHHh-hcc-hHHHHHHHHHHHHHHHHhcc-ccceeeecchhhcceeeeecccccC-
Confidence                     1122222222222333332 222 23667788889999999998 666887544 455555443332222 


Q ss_pred             CCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        411 NMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       411 ~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                                 +  ..++.+.+.+.|+..+...     ...+|++ .++..|+++++.++..+.+
T Consensus       319 -----------~--~~~l~~~~~k~gi~lm~~~-----s~r~Riv-lh~Qvt~~~ve~~~~~~~k  364 (384)
T KOG1368|consen  319 -----------T--AEELCKFLEKNGILLMGGA-----SRRIRIV-LHHQVTDEDVEYVKSVLSK  364 (384)
T ss_pred             -----------C--HHHHHHHHHHCCeEEeecc-----ccceEEE-EEEecCHHHHHHHHHHHHH
Confidence                       1  3467788888887665542     2458999 9999999999999999954

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.91  E-value=1.6e-21  Score=193.54  Aligned_cols=321  Identities=12%  Similarity=0.045  Sum_probs=213.8

Q ss_pred             HHHHHHHHcCc-CCcchhcChhhHHHHHHHHHHHHHHhCC--CC-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCc
Q psy12303         89 AGEWLIATANT-NMFTYEIAPVFILMETVVLEKMRQIIGW--QG-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSA  164 (480)
Q Consensus        89 ~~~~l~~~~~~-~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~  164 (480)
                      +.+.+...++. ..+.|. .++...+.+.+.+++.+..|.  ++ .++++|+|+++++..++.+..+             
T Consensus        50 ~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~-------------  115 (399)
T PRK07681         50 VREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYAN-------------  115 (399)
T ss_pred             HHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCC-------------
Confidence            44555554432 223332 356677888888888877775  55 6899999999999888877654             


Q ss_pred             cCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCC--CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC
Q psy12303        165 IKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKR--GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP  242 (480)
Q Consensus       165 ~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~--~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~  242 (480)
                       ||+ .|+++.++|+.+...+..+|.   +++.+|.+++  +.+|++++++++.+.      +++|++++|+||||.+.+
T Consensus       116 -~Gd-~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~v~l~~P~NPTG~~~s  184 (399)
T PRK07681        116 -PGD-IILVPDPGYTAYETGIQMAGA---TSYYMPLKKENDFLPDLELIPEEIADK------AKMMILNFPGNPVPAMAH  184 (399)
T ss_pred             -CCC-EEEECCCCccchHHHHHhcCC---EEEEEecCCCCCCcCCHHHHHHhcccc------ceEEEEeCCCCCcCcCCC
Confidence             556 788999999999999999998   8889998753  578999999888654      889999999999999977


Q ss_pred             ---hHHHHHHHHHcCcEEEeeccccccccccccccC-cccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhc
Q psy12303        243 ---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH-PRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQ  317 (480)
Q Consensus       243 ---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~  317 (480)
                         +++|.++|++||+++++|++|+........... ..+.+.....++..|++|.++ .+..+|+++. ++.+......
T Consensus       185 ~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~-~~~l~~~~~~  263 (399)
T PRK07681        185 EDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIG-NEEIVRALTQ  263 (399)
T ss_pred             HHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEec-CHHHHHHHHH
Confidence               788889999999999999999976542211100 001111123456679999997 4467999985 4545443321


Q ss_pred             CCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC
Q psy12303        318 MSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP  395 (480)
Q Consensus       318 ~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~  395 (480)
                      ... +...                    ....+...++...+  +.+.+++..+...+..+.+.+.|++ . |+++. .|
T Consensus       264 ~~~-~~~~--------------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~p  319 (399)
T PRK07681        264 FKS-NTDY--------------------GVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRT-F-GWNVD-KP  319 (399)
T ss_pred             HHh-hccc--------------------CCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-C-CCccc-CC
Confidence            110 0000                    01122222222222  3455667777778888999999998 5 78763 56


Q ss_pred             ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHH
Q psy12303        396 EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEM  473 (480)
Q Consensus       396 ~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l  473 (480)
                      ..+.++|...+....              ..++...+.+ .|+.+.+...+.. ..+++|+++.   .+++++++++++|
T Consensus       320 ~~g~f~~~~l~~~~~--------------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~---~~~~~~~~~l~~l  382 (399)
T PRK07681        320 AGSMFVWAEIPKGWT--------------SLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALV---QDEEVLQQAVENI  382 (399)
T ss_pred             CeeeEEEEECCCCCC--------------HHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEec---CCHHHHHHHHHHH
Confidence            667766654443211              2356667766 6754443222221 1469999954   3689999999999


Q ss_pred             HHh
Q psy12303        474 DRL  476 (480)
Q Consensus       474 ~~~  476 (480)
                      ++.
T Consensus       383 ~~~  385 (399)
T PRK07681        383 RNS  385 (399)
T ss_pred             HHh
Confidence            884

>PLN02656 tyrosine transaminase

Probab=99.91  E-value=1e-21  Score=195.34  Aligned_cols=330  Identities=12%  Similarity=0.044  Sum_probs=217.2

Q ss_pred             hHHHHHHHHcCcC-CcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCc
Q psy12303         88 MAGEWLIATANTN-MFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSA  164 (480)
Q Consensus        88 ~~~~~l~~~~~~~-~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~  164 (480)
                      .+.+.+...+..+ ...|....+..++.+.+.+++.+..|.  ++.++++|+|+++|+..++.+..+             
T Consensus        52 ~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-------------  118 (409)
T PLN02656         52 VAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLAR-------------  118 (409)
T ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHhC-------------
Confidence            3335555444433 345655666778888888888777664  567899999999999988887654             


Q ss_pred             cCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc-
Q psy12303        165 IKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD-  241 (480)
Q Consensus       165 ~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~-  241 (480)
                       ||+ .|++++++|+.+...+...|+   +++.+|+++  ++.+|++++++++++.      +++|++++|+||||.+. 
T Consensus       119 -~gd-~Vlv~~p~y~~~~~~~~~~g~---~~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P~NPtG~~~s  187 (409)
T PLN02656        119 -PGA-NILLPRPGFPIYELCAAFRHL---EVRYVDLLPEKGWEVDLDAVEALADQN------TVALVIINPGNPCGNVYS  187 (409)
T ss_pred             -CCC-eEEEeCCCCCcHHHHHHHcCC---EEEEEeCCCcCCCCCCHHHHHHHhccC------ceEEEEECCCCCCCCCCC
Confidence             556 788889999988888888888   788888853  4689999999888654      78999999999999994 


Q ss_pred             --ChHHHHHHHHHcCcEEEeeccccccccccccccC-cccCCCCCCccceeCccccCCC-cccceEEEEeC-------ch
Q psy12303        242 --PIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH-PRLTGIERADSVTWNPHKLMGT-LLQCSTIHFKQ-------DG  310 (480)
Q Consensus       242 --~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~~-------~~  310 (480)
                        ++++|.++|++||+++++|++|+...+....... ..+... .--+++.|++|.++. +..+|+++..+       ..
T Consensus       188 ~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~  266 (409)
T PLN02656        188 YQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSI-VPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPK  266 (409)
T ss_pred             HHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhccc-CcEEEEcccchhccCcceeEEEEEEeCcccccccHH
Confidence              5889999999999999999999976542211100 001111 122456789998554 47899999753       23


Q ss_pred             hhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh---cHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12303        311 LLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK---GDEGFEKQIDRLMELAEYMVKKIKSMPD  387 (480)
Q Consensus       311 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~---g~~~~~~~~~~~~~l~~~l~~~l~~~~~  387 (480)
                      ...........+. .                     ...+...++...+   ....+++..++..+.++.+.+.|++ ++
T Consensus       267 ~~~~~~~~~~~~~-~---------------------~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~-~~  323 (409)
T PLN02656        267 IVERIKKYFDILG-G---------------------PATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKE-IP  323 (409)
T ss_pred             HHHHHHHHHhhhc-C---------------------CCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh-CC
Confidence            3332221100000 0                     1122223332222   2456777788888889999999998 76


Q ss_pred             CeEEecCCceeEEEEEeecCc-cCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHH
Q psy12303        388 KFYLILEPEMVNVSFWYLPTR-VRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDI  466 (480)
Q Consensus       388 g~~~~~~~~~~~v~f~~~~~~-~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di  466 (480)
                      ++....+|..+.++|...+.. ..+....         ...+.+.+.+.|+.+++...+ +..+++|+++..   +++++
T Consensus       324 ~~~~~~~p~gg~~~w~~l~~~~~~~~~~~---------~~~~~~~l~~~gV~v~pg~~f-g~~~~iRi~~~~---~~e~l  390 (409)
T PLN02656        324 CITCPHKPEGSMAVMVKLNLSLLEDISDD---------IDFCFKLAREESVIILPGTAV-GLKNWLRITFAA---DPSSL  390 (409)
T ss_pred             CCcCCcCCCeEEEEEEecchhhcCCCCCH---------HHHHHHHHHhCCEEEecchhc-CCCCeEEEEeCC---CHHHH
Confidence            654334677877776544311 0100000         012345566777655543333 336899999542   68999


Q ss_pred             HHHHHHHHHhhc
Q psy12303        467 DFLLTEMDRLGH  478 (480)
Q Consensus       467 ~~~~~~l~~~~~  478 (480)
                      ++.+++|++++.
T Consensus       391 ~eal~rl~~~~~  402 (409)
T PLN02656        391 EEALGRIKSFYL  402 (409)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>PRK09082 methionine aminotransferase; Validated

Probab=99.91  E-value=7.6e-22  Score=195.02  Aligned_cols=322  Identities=11%  Similarity=0.054  Sum_probs=214.6

Q ss_pred             HHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCC--C-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC
Q psy12303         91 EWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQ--G-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG  167 (480)
Q Consensus        91 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~--~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g  167 (480)
                      +.+...+......|....+...+++++.+++.+++|.+  + .++++|+|+++|+..++.+...              ||
T Consensus        50 ~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~--------------~g  115 (386)
T PRK09082         50 EALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVR--------------PG  115 (386)
T ss_pred             HHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHcC--------------CC
Confidence            44444443333456556667889999999999999974  2 3799999999999988877653              55


Q ss_pred             ceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccc---cCh
Q psy12303        168 QLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAF---DPI  243 (480)
Q Consensus       168 ~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~---~~l  243 (480)
                      + .|+++.++|.++..+++..|.   +++.+|.+. ++.+|++++++++++.      +++|++++++||||.+   .++
T Consensus       116 d-~Vli~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~  185 (386)
T PRK09082        116 D-EVIVFDPSYDSYAPAIELAGG---RAVRVALQPPDFRVDWQRFAAAISPR------TRLIILNTPHNPSGTVWSAADM  185 (386)
T ss_pred             C-EEEEeCCCchhhHHHHHHcCC---EEEEEecCcccccCCHHHHHHhcCcc------ceEEEEeCCCCCCCcCCCHHHH
Confidence            6 788999999999999999887   888999864 5789999999998754      8899999999999987   568


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccccC-cccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcc
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRH-PRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAE  321 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~  321 (480)
                      ++|.++|++||+++++|++|+...+....... -.+.+...-.++..|++|.++.| ..+|+++.. ++.+....... .
T Consensus       186 ~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~-~~l~~~~~~~~-~  263 (386)
T PRK09082        186 RALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAP-AALSAEFRKVH-Q  263 (386)
T ss_pred             HHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCC-HHHHHHHHHHH-h
Confidence            99999999999999999999876542211111 01122223456777999999744 678998864 44444322111 0


Q ss_pred             cccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeE
Q psy12303        322 YLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVN  399 (480)
Q Consensus       322 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~  399 (480)
                      +...                    ....+...++...+  ..+.++++.+...++.+++.+.|++  .++++ .++.++.
T Consensus       264 ~~~~--------------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~--~~~~~-~~~~g~~  320 (386)
T PRK09082        264 YNTF--------------------TVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALAN--SRFKL-LPCEGTY  320 (386)
T ss_pred             hhcC--------------------CCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh--CCCcc-cCCCeeE
Confidence            0000                    01111222222222  3455677777788889999999998  57876 3566776


Q ss_pred             EEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeC---CcccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        400 VSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLN---DLPNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       400 v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~---~~~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                      ++|...+. +.+.+           ..++.+.|. +.|+.+.+...+.   ...+++|+++.   .+++++++.+++|++
T Consensus       321 ~~~~~~~~-~~~~~-----------~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~---~~~~~l~~~~~rl~~  385 (386)
T PRK09082        321 FQLVDYSA-ISDLD-----------DVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFA---KQEETLDAAAERLCQ  385 (386)
T ss_pred             EEEEeccc-cCCCC-----------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEec---CCHHHHHHHHHHHhh
Confidence            66543332 11111           134556654 4564443332221   11479999954   268999999998875


Q ss_pred             h
Q psy12303        476 L  476 (480)
Q Consensus       476 ~  476 (480)
                      +
T Consensus       386 ~  386 (386)
T PRK09082        386 L  386 (386)
T ss_pred             C
Confidence            3

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.91  E-value=1.9e-21  Score=189.60  Aligned_cols=301  Identities=15%  Similarity=0.125  Sum_probs=189.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCC---------CccCCceEEEecCCCchh-
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGL---------SAIKGQLVMFTSDQCHYS-  180 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~---------~~~~g~~~vl~~~~~h~s-  180 (480)
                      .++.+++.+++++++|.+.  +++|+|+|+|+..++.++...        |.         ...+++ .|+++.+.++. 
T Consensus        44 ~~~~~~~~~~~a~~~g~~~--~~~~~g~t~al~~al~al~~~--------Gd~~~~~~~~~s~~~~~-eVi~~~~~~~~~  112 (363)
T TIGR01437        44 KELVNKTGEYIANLLGVED--AVIVSSASAGIAQSVAAVITR--------GNRYLVENLHDSKIEVN-EVVLPKGHNVDY  112 (363)
T ss_pred             HHHHHHHHHHHHHhhCCCe--EEEEcCHHHHHHHHHHHHhcC--------CCcchhhcccccccccc-eEEEECccchhc
Confidence            4667788999999999864  899999999999999987542        21         011334 56666533322 


Q ss_pred             ---HHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEE-eccCCCccccccChHHHHHHHHHcCcE
Q psy12303        181 ---VRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVN-CTSGTTVLGAFDPIEEIADICQKYNMW  256 (480)
Q Consensus       181 ---~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~-~~~~~~~~G~~~~l~~I~~i~~~~~~~  256 (480)
                         +..++...|.   ++++++.  ++.+|+++++++|+++      |++|+ ++.+++++|.+.|+++|.++|++||++
T Consensus       113 ~~~~~~~~~~~g~---~~v~v~~--~~~~d~~~le~ai~~~------t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~  181 (363)
T TIGR01437       113 GAPVETMVRLGGG---KVVEAGY--ANECSAEQLEAAITEK------TAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLP  181 (363)
T ss_pred             CCchHHHHHhcCC---eEEEEcC--CCCCCHHHHHHhcChh------ceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCe
Confidence               2456666777   6677765  4679999999999877      77665 567778999999999999999999999


Q ss_pred             EEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCC
Q psy12303        257 LHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDT  336 (480)
Q Consensus       257 l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  336 (480)
                      +|+|+||+...  ......       ++|++++|+||++++|. .|+++. +++.+........    ...    ..+..
T Consensus       182 vivD~a~~~~~--~~~~~~-------g~D~~~~S~~K~l~gp~-~G~l~~-~~~~i~~~~~~~~----~~~----~~~~~  242 (363)
T TIGR01437       182 LIVDAAAEEDL--QKYYRL-------GADLVIYSGAKAIEGPT-SGLVLG-KKKYIEWVKLQSK----GIG----RAMKV  242 (363)
T ss_pred             EEEECCCCCch--HHHHHc-------CCCEEEEeCCcccCCCc-eEEEEE-cHHHHHHHHhccC----CCc----ceecc
Confidence            99999997211  001112       68999999999999876 677664 4444443211100    000    00000


Q ss_pred             CCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCce-e----EEEEEeecCccCC
Q psy12303        337 GDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEM-V----NVSFWYLPTRVRN  411 (480)
Q Consensus       337 ~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~-~----~v~f~~~~~~~~~  411 (480)
                             +. ...+++..++..+-..+ .+.++...+.++++.+.|.+ ++|+++..++.. .    .+.+.+.... .+
T Consensus       243 -------~~-~~~~gl~aAl~~~~~~~-~~~~~~~~~~~~~l~~~L~~-i~g~~~~~~~~~~~~~~~~~~v~~~~~~-~g  311 (363)
T TIGR01437       243 -------GK-ENILGLTAALEQYLSTG-KESGAEMVAKLTPFIEALNT-LKGVSASIVQDEAGRDIARAEIRFDESE-LG  311 (363)
T ss_pred             -------CH-HHHHHHHHHHHHHHccC-cccHHHHHHHHHHHHHHHhc-CCCeEEEEecCCCCCcCceEEEEEeccC-CC
Confidence                   00 11244444554442222 23344445567789999999 899998743211 0    1222222211 01


Q ss_pred             CchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        412 MPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       412 ~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      .+           ..++.++|.+.+.-+........ .+.+|+. +.. ++++|++.++++|++++
T Consensus       312 ~~-----------~~~l~~~L~~~~~~I~~r~~~~~-~~~~~l~-~~~-~~~~e~~~~~~~l~~~~  363 (363)
T TIGR01437       312 MT-----------AADVVQALRQGEPAIYTRGYKAN-EGIIEID-PRS-VTGGQLDIIVERIREIV  363 (363)
T ss_pred             CC-----------HHHHHHHHhcCCCCEEEeeeeec-CCeEEEE-eec-CCHHHHHHHHHHHHHhC
Confidence            11           24677778766632222211222 5688888 443 56999999999998763

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK08960 hypothetical protein; Provisional

Probab=99.91  E-value=1.1e-21  Score=194.18  Aligned_cols=325  Identities=11%  Similarity=0.018  Sum_probs=210.9

Q ss_pred             hHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhC--CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCC
Q psy12303         85 VVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIG--WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGL  162 (480)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~  162 (480)
                      +..+. +.+...+......|....+..++.+.+++++.+..|  ++++++++|+|+++|+..++.+..+           
T Consensus        47 ~~~v~-~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~-----------  114 (387)
T PRK08960         47 AEPIV-AAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVD-----------  114 (387)
T ss_pred             CHHHH-HHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcC-----------
Confidence            34444 444544443334565566677888888888877666  4678899999999999988877643           


Q ss_pred             CccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCC--CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccc
Q psy12303        163 SAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKR--GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAF  240 (480)
Q Consensus       163 ~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~--~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~  240 (480)
                         ||+ .|+++.++|+++...+...|.   +++.+|++.+  +.+|++++++++++.      ++++++++++||||.+
T Consensus       115 ---~gd-~vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~~~~~------~~~i~i~~p~NPtG~~  181 (387)
T PRK08960        115 ---PGK-HWLLADPGYPCNRHFLRLVEG---AAQLVPVGPDSRYQLTPALVERHWNAD------TVGALVASPANPTGTL  181 (387)
T ss_pred             ---CCC-EEEEcCCCCcchHHHHHhcCC---eEEEEecCcccCCCCCHHHHHHHhCcc------ceEEEEECCCCCCCcC
Confidence               556 888999999999999998887   7888888653  579999999988765      7788999999999999


Q ss_pred             cC---hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhh
Q psy12303        241 DP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCN  316 (480)
Q Consensus       241 ~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~  316 (480)
                      .+   +++|+++|++||+++++|++|....... . .. .......--+++.|++|.++ .+..+|+++.. +..+....
T Consensus       182 ~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~-~-~~-~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~-~~~~~~~~  257 (387)
T PRK08960        182 LSRDELAALSQALRARGGHLVVDEIYHGLTYGV-D-AA-SVLEVDDDAFVLNSFSKYFGMTGWRLGWLVAP-PAAVPELE  257 (387)
T ss_pred             cCHHHHHHHHHHHHHcCCEEEEEccccccccCC-C-CC-ChhhccCCEEEEeecccccCCcccEEEEEEcC-HHHHHHHH
Confidence            77   5567777899999999999998754321 1 11 11122222356679999996 44679998865 34443322


Q ss_pred             cCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh---cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        317 QMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK---GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       317 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~---g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                      .....+..                  +   ...+...++...+   ..+.+.+..+...+.++.+.+.|++ . ++.+..
T Consensus       258 ~~~~~~~~------------------~---~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~-~~~~~~  314 (387)
T PRK08960        258 KLAQNLYI------------------S---ASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRE-L-GFGIAV  314 (387)
T ss_pred             HHHhhhcc------------------C---CCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh-c-CCcCCc
Confidence            11111100                  0   1122222222222   2345566667777888889999988 4 666544


Q ss_pred             CCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCC---cccEEEEecccCCCCHHHHHHH
Q psy12303        394 EPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLND---LPNFFRNIISSAAVTEGDIDFL  469 (480)
Q Consensus       394 ~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~---~~~~~R~~~~~~~~t~~di~~~  469 (480)
                      .|..+.+.|.-.+..  ..+           ..++.+.+. +.|+. +.++...+   ..+++|+++..   +.+.+...
T Consensus       315 ~p~g~~f~~~~~~~~--~~~-----------~~~~~~~ll~~~gi~-v~pg~~f~~~~~~~~iRi~~~~---~~~~l~~a  377 (387)
T PRK08960        315 EPQGAFYLYADISAF--GGD-----------AFAFCRHFLETEHVA-FTPGLDFGRHQAGQHVRFAYTQ---SLPRLQEA  377 (387)
T ss_pred             CCCeeEEEEEecccc--CCC-----------HHHHHHHHHHhCCEE-EcCchHhCCCCCCCeEEEEecC---CHHHHHHH
Confidence            566666666433321  000           134556655 45654 44332222   14699999543   57888888


Q ss_pred             HHHHHHhhc
Q psy12303        470 LTEMDRLGH  478 (480)
Q Consensus       470 ~~~l~~~~~  478 (480)
                      ++.|.++++
T Consensus       378 l~~l~~~~~  386 (387)
T PRK08960        378 VERIARGLR  386 (387)
T ss_pred             HHHHHHHHh
Confidence            888877653

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.91  E-value=5.6e-22  Score=193.47  Aligned_cols=286  Identities=16%  Similarity=0.166  Sum_probs=196.7

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++.+++++|++++++++|+|+|+++..++.++.+              +|+ .|+++.++|+.+...+...|.   +
T Consensus        57 ~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~~--------------~gd-~v~~~~p~y~~~~~~~~~~g~---~  118 (346)
T TIGR01141        57 AELKQALADYYGVDPEQILLGNGSDEIIELLIRAFLE--------------PGD-AVLVPPPTYSMYEISAKIHGA---E  118 (346)
T ss_pred             HHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhcC--------------CCC-EEEEcCCCHHHHHHHHHHcCC---e
Confidence            3567778999998878899999999998877776643              445 788888888888888888888   8


Q ss_pred             eEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHc--CcEEEeecccccccccccc
Q psy12303        195 CVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY--NMWLHVDAAWGGGLLLSKK  272 (480)
Q Consensus       195 v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~--~~~l~vD~a~~~~~~~~~~  272 (480)
                      ++.+|.++++.+|++++++++.+.      +++|++++++|++|.+.|++++.++|+.+  ++++++|++|+........
T Consensus       119 ~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~  192 (346)
T TIGR01141       119 VVKVPLDEDGQLDLEDILVAIDDK------PKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPST  192 (346)
T ss_pred             EEEeccCCCCCCCHHHHHHhcCCC------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccH
Confidence            899999888889999999876543      88999999999999999999999999987  9999999999854321110


Q ss_pred             ccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchH
Q psy12303        273 YRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFK  351 (480)
Q Consensus       273 ~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~  351 (480)
                        .+..... ..++++.|++|+++.| .++|+++. ++..+.........+.                       ...+.
T Consensus       193 --~~~~~~~-~~~i~~~S~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~-----------------------~~~~~  245 (346)
T TIGR01141       193 --LPLLAEY-PNLIVLRTLSKAFGLAGLRIGYAIA-NAEIIDALNKVRAPFN-----------------------LSRLA  245 (346)
T ss_pred             --HHHHhhC-CCEEEEehhhHhhhchhhhceeeec-CHHHHHHHHhccCCCC-----------------------CCHHH
Confidence              0011111 2346677899999644 56899886 4444444332111110                       11122


Q ss_pred             HHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHH
Q psy12303        352 LWLQWRAKG-DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKG  430 (480)
Q Consensus       352 ~~~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~  430 (480)
                      ...+...+. ...+.+..++..++++++.+.|++ ++|+++. ++....+++.+ +.  .              .+++.+
T Consensus       246 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~-~~~g~~~~~~~-~~--~--------------~~~~~~  306 (346)
T TIGR01141       246 QAAAIAALRDDDFIEKTVEEINAERERLYDGLKK-LPGLEVY-PSDANFVLIRF-PR--D--------------ADALFE  306 (346)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh-cCCCEEC-CCcCCEEEEec-CC--C--------------HHHHHH
Confidence            222222221 224677788888999999999999 7898864 44444444432 21  1              245677


Q ss_pred             HHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        431 RMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       431 ~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                      +|.+.|+.+.....+.+..+++|++ .+   +++|+++++++|+
T Consensus       307 ~L~~~gI~v~~g~~f~~~~~~iRls-~~---~~~~i~~~~~~l~  346 (346)
T TIGR01141       307 ALLEKGIIVRDLNSYPGLPNCLRIT-VG---TREENDRFLAALR  346 (346)
T ss_pred             HHHHCCeEEEeCCCcCCCCCeEEEe-cC---CHHHHHHHHHHhC
Confidence            8888885443322221215799999 43   7999999998873

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK08912 hypothetical protein; Provisional

Probab=99.91  E-value=2.5e-21  Score=191.60  Aligned_cols=315  Identities=13%  Similarity=0.083  Sum_probs=210.3

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHhCC--CCC-CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCc
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQIIGW--QGG-DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH  178 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~g~--~~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h  178 (480)
                      ..|....+..++.+.+++++.+.+|.  ++. ++++|+|+++|+..++.+..+              ||+ .|+++.++|
T Consensus        57 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~--------------~gd-~Vlv~~p~y  121 (387)
T PRK08912         57 NQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVE--------------PGD-EVVLFQPLY  121 (387)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhcC--------------CCC-EEEEeCCCc
Confidence            44655556678888888888887775  455 899999999999877776643              555 788899999


Q ss_pred             hhHHHHHHHcCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcC
Q psy12303        179 YSVRSCAAVCGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYN  254 (480)
Q Consensus       179 ~s~~~~~~~~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~  254 (480)
                      +.+...+...|.   +++.+|.++ ++.+|+++|++.+.+.      +++|++++++||||.+.+   +++|.++|++|+
T Consensus       122 ~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~  192 (387)
T PRK08912        122 DAYLPLIRRAGG---VPRLVRLEPPHWRLPRAALAAAFSPR------TKAVLLNNPLNPAGKVFPREELALLAEFCQRHD  192 (387)
T ss_pred             hhhHHHHHHcCC---EEEEEecCcccCcCCHHHHHHHhCcc------ceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCC
Confidence            999999999988   888899864 6789999999988654      789999999999999976   677899999999


Q ss_pred             cEEEeeccccccccccccccC-cccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCc
Q psy12303        255 MWLHVDAAWGGGLLLSKKYRH-PRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDV  332 (480)
Q Consensus       255 ~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  332 (480)
                      +++++|++|+........... ..+.+....++++.|++|.++ .+..+|+++.. ++...........+...       
T Consensus       193 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~-~~~~~~l~~~~~~~~~~-------  264 (387)
T PRK08912        193 AVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAA-PPLLRVLAKAHQFLTFT-------  264 (387)
T ss_pred             eEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecC-HHHHHHHHHHHhhcccc-------
Confidence            999999999865442111110 012222345688899999998 44678998864 44443332111110000       


Q ss_pred             ccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecC-ccCC
Q psy12303        333 RYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPT-RVRN  411 (480)
Q Consensus       333 ~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~-~~~~  411 (480)
                                .+. .....+...+.. ..+.+++..++..+.++++.+.|++ . |+++. +|..+.+.+...+. .. .
T Consensus       265 ----------~~~-~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~g~~~l~~~l~~~~~-~  328 (387)
T PRK08912        265 ----------TPP-NLQAAVAYGLGK-PDDYFEGMRADLARSRDRLAAGLRR-I-GFPVL-PSQGTYFLTVDLAPLGL-A  328 (387)
T ss_pred             ----------CCh-HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHh-C-CCccc-CCCcceEEEecccccCC-C
Confidence                      000 001111111211 2445677778888899999999999 4 78764 56666555533322 10 0


Q ss_pred             CchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeC---CcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        412 MPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLN---DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       412 ~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~---~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .+           ..++.+.+. +.|+.+.+...+.   ...+++|+++..   .+++++..+++|++.++
T Consensus       329 ~~-----------~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~---~~~~l~~~l~rl~~~l~  385 (387)
T PRK08912        329 ED-----------DVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK---RDATLDEAVERLAAARR  385 (387)
T ss_pred             CC-----------HHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeC---CHHHHHHHHHHHHHHHh
Confidence            00           134666665 4575444332221   115799999553   58999999999988765

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.91  E-value=3e-21  Score=192.26  Aligned_cols=331  Identities=13%  Similarity=0.079  Sum_probs=217.3

Q ss_pred             hHHhHHHHHHHHcCc-CCcchhcChhhHHHHHHHHHHHHHHhC--------CCCCCeEECCChhHHHHHHHHHHHHhcCc
Q psy12303         85 VVSMAGEWLIATANT-NMFTYEIAPVFILMETVVLEKMRQIIG--------WQGGDSILAPGGSISNLYAFLAARHKMFP  155 (480)
Q Consensus        85 ~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~e~~~~~~la~~~g--------~~~~~~~~t~ggt~a~~~al~~~~~~~~~  155 (480)
                      ++..+.+.+...++. ....|....+..++.+.+.+++.+.++        +++.++++|+|+++++..++.+..+    
T Consensus        51 p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~----  126 (412)
T PTZ00433         51 TPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCD----  126 (412)
T ss_pred             CCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhcC----
Confidence            344455666555443 234455444567788888888876543        5668899999999999999887754    


Q ss_pred             hhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccC
Q psy12303        156 TYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSG  233 (480)
Q Consensus       156 ~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~  233 (480)
                                ||+ .|+++.++|+.+...++..|+   +++.+|.++  ++.+|+++|++++++.      +++|+++++
T Consensus       127 ----------~gd-~vlv~~P~y~~~~~~~~~~g~---~~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~p  186 (412)
T PTZ00433        127 ----------EGD-NILVPAPGFPHYETVCKAYGI---EMRFYNCRPEKDWEADLDEIRRLVDDR------TKALIMTNP  186 (412)
T ss_pred             ----------CCC-EEEEccCCcccHHHHHHHcCC---EEEEEecCccccCcCCHHHHHHHhccC------ceEEEEeCC
Confidence                      556 788999999999999999998   788888864  5789999999888654      889999999


Q ss_pred             CCccccccC---hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCC--CCccceeCccccCC-CcccceEEEEe
Q psy12303        234 TTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIE--RADSVTWNPHKLMG-TLLQCSTIHFK  307 (480)
Q Consensus       234 ~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~--~~D~~~~s~hK~~~-~p~~~g~~~~~  307 (480)
                      +||||.+.+   +++|.++|+++|+++++|++|...........  .+..+.  ..-+++.|++|.++ .+..+|++++.
T Consensus       187 ~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~--~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~~  264 (412)
T PTZ00433        187 SNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFT--SVADFDTTVPRVILGGTAKNLVVPGWRLGWLLLV  264 (412)
T ss_pred             CCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCcc--chhhccCCCceEEEccchhhcCCCCeeEEEEEEe
Confidence            999998765   77889999999999999999986553211111  111111  11256679999985 44789999973


Q ss_pred             Cc-----hhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh---cHHHHHHHHHHHHHHHHHHH
Q psy12303        308 QD-----GLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK---GDEGFEKQIDRLMELAEYMV  379 (480)
Q Consensus       308 ~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~---g~~~~~~~~~~~~~l~~~l~  379 (480)
                      ++     ..+........... .                     ...+...+....+   ....+++..++..+..+.+.
T Consensus       265 ~p~~~~~~~~~~~~~~~~~~~-~---------------------~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~  322 (412)
T PTZ00433        265 DPHGNGGDFLDGMKRLGMLVC-G---------------------PCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLY  322 (412)
T ss_pred             CCcccHHHHHHHHHHHhhccC-C---------------------CChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence            32     23322211110000 0                     1122222222222   24556777778888899999


Q ss_pred             HHHhcCCCCeEEecCCceeEEEEEeecCc-cCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeCCcccEEEEecc
Q psy12303        380 KKIKSMPDKFYLILEPEMVNVSFWYLPTR-VRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLNDLPNFFRNIIS  457 (480)
Q Consensus       380 ~~l~~~~~g~~~~~~~~~~~v~f~~~~~~-~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~~~R~~~~  457 (480)
                      +.|++ ..++.+ ..|+.+.++|.-.+.. ..+..        +  ..++.+.|.+ .|+.+. ++...+..+++|+++.
T Consensus       323 ~~L~~-~~~~~~-~~p~gg~f~~~~l~~~~~~~~~--------~--~~~~~~~ll~~~gV~v~-pg~~f~~~~~iRis~~  389 (412)
T PTZ00433        323 NHIGE-CIGLSP-TMPRGSMFLMSRLDLEKFRDIK--------S--DVEFYEKLLEEENVQVL-PGEIFHMPGFTRLTIS  389 (412)
T ss_pred             HHHhc-CCCCcc-cCCCeeEEEEEEechhhcCCCC--------C--HHHHHHHHHHhcCEEEe-CccccCCCCeEEEEec
Confidence            99988 667765 3677776665433321 00000        0  2356677764 675444 3333333679999954


Q ss_pred             cCCCCHHHHHHHHHHHHHhhcc
Q psy12303        458 SAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       458 ~~~~t~~di~~~~~~l~~~~~~  479 (480)
                         ..++++++.+++|.+++++
T Consensus       390 ---~~~e~l~~al~~l~~~~~~  408 (412)
T PTZ00433        390 ---RPVEVLREAVERIKAFCER  408 (412)
T ss_pred             ---CCHHHHHHHHHHHHHHHHH
Confidence               2488999999999887653

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.91  E-value=4.2e-21  Score=190.79  Aligned_cols=325  Identities=11%  Similarity=0.048  Sum_probs=213.6

Q ss_pred             HHHHHHcCcC-CcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC
Q psy12303         91 EWLIATANTN-MFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG  167 (480)
Q Consensus        91 ~~l~~~~~~~-~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g  167 (480)
                      +.+...++.. ...|....+..++.+.+.+++.+..|.  +++++++|+|+++++..++.+..+              ||
T Consensus        56 ~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~--------------~g  121 (409)
T PLN00143         56 DAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLAR--------------PE  121 (409)
T ss_pred             HHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcC--------------CC
Confidence            4444444432 244655566777888888888777654  667899999999999999887754              55


Q ss_pred             ceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCC--CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---
Q psy12303        168 QLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD--KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---  242 (480)
Q Consensus       168 ~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---  242 (480)
                      + .|+++.++|+.+...+...|.   +++.++.+  +++.+|+++|++++++.      ++.+++++|+||||.+.+   
T Consensus       122 d-~v~v~~P~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~~~~~nP~NPTG~~~s~~~  191 (409)
T PLN00143        122 A-NILLPRPGFPDVETYAIFHHL---EIRHFDLLPEKGWEVDLDAVEAIADEN------TIAMVIINPGNPCGSVYSYEH  191 (409)
T ss_pred             C-EEEEcCCCCcCHHHHHHHcCC---EEEEEeccCCCCCcCCHHHHHHhcccC------CEEEEEECCCCCCCCccCHHH
Confidence            6 788999999999999999988   78888874  34679999999887654      788999999999999977   


Q ss_pred             hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCC--CccceeCccccCCCc-ccceEEEEeCc-hhhH-----
Q psy12303        243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIER--ADSVTWNPHKLMGTL-LQCSTIHFKQD-GLLI-----  313 (480)
Q Consensus       243 l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~--~D~~~~s~hK~~~~p-~~~g~~~~~~~-~~~~-----  313 (480)
                      +++|.++|++|++++++|++|.......... . .+..+..  --+++.|++|.++.| ..+|+++..++ ....     
T Consensus       192 ~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~-~-~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~  269 (409)
T PLN00143        192 LNKIAETARKLGILVIADEVYGHIVFGSKPF-V-PMGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIA  269 (409)
T ss_pred             HHHHHHHHHHcCCeEEEEccccccccCCCCC-c-chhhhcccCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHHH
Confidence            7788888999999999999998765421110 0 1111111  125667999995544 78999987543 2211     


Q ss_pred             -hhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh---cHHHHHHHHHHHHHHHHHHHHHHhcCCCCe
Q psy12303        314 -SCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK---GDEGFEKQIDRLMELAEYMVKKIKSMPDKF  389 (480)
Q Consensus       314 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~---g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~  389 (480)
                       ..........                   +   ...+...+....+   ....+++.+++..+..+++.+.|.+ +++.
T Consensus       270 ~~~~~~~~~~~-------------------~---~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~  326 (409)
T PLN00143        270 DSIKKALNPAP-------------------F---PPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKE-IPCI  326 (409)
T ss_pred             HHHHHHHhccC-------------------C---CCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhc-CCCC
Confidence             1110000000                   0   0112222222222   2456788888888888889999988 6655


Q ss_pred             EEecCCceeEEEEEeecCc-cCCCchhhHHHHhhhhhHHHH-HHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHH
Q psy12303        390 YLILEPEMVNVSFWYLPTR-VRNMPHEKRLNILGEITPILK-GRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDID  467 (480)
Q Consensus       390 ~~~~~~~~~~v~f~~~~~~-~~~~~~~~~~~~l~~~~~~i~-~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~  467 (480)
                      .....|..+.+.|...+.. ..+...          ..++. ..+.+.|+.+.....+ +..+++|+++.   +++++++
T Consensus       327 ~~~~~p~gg~f~w~~l~~~~~~~~~~----------~~~~~~~ll~~~gV~v~pg~~f-~~~~~iRi~~~---~~~~~l~  392 (409)
T PLN00143        327 MCPQKAEGAFFALVKLNLLLLEDIED----------DMEFCLKLAKEESLIILPGVTV-GLKNWLRITFA---VEQSSLE  392 (409)
T ss_pred             CCCCCCCeeEEEEEecchhhcCCCCC----------HHHHHHHHHHhCCEEEeCcccc-CCCCeEEEEEc---CCHHHHH
Confidence            4344677777776544321 000000          12333 3445677554443333 33689999954   3589999


Q ss_pred             HHHHHHHHhhc
Q psy12303        468 FLLTEMDRLGH  478 (480)
Q Consensus       468 ~~~~~l~~~~~  478 (480)
                      +.+++|+++++
T Consensus       393 ~al~rl~~~l~  403 (409)
T PLN00143        393 DGLGRLKSFCG  403 (409)
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.91  E-value=4.4e-21  Score=189.81  Aligned_cols=327  Identities=12%  Similarity=0.113  Sum_probs=210.5

Q ss_pred             HHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC---CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccC
Q psy12303         90 GEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW---QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIK  166 (480)
Q Consensus        90 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~---~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~  166 (480)
                      .+.+...+......|....+..++++.+++++...+|.   ++.++++|+|+++|+..++.+...              |
T Consensus        49 ~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~--------------~  114 (391)
T PRK07309         49 KEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAILE--------------P  114 (391)
T ss_pred             HHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhcC--------------C
Confidence            34444333322233544455678888888888887776   246899999999999988887643              4


Q ss_pred             CceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---
Q psy12303        167 GQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---  242 (480)
Q Consensus       167 g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---  242 (480)
                      |+ .|++..+.|..+...++..|.   +++.+|.++ ++.+|+++|++++++.   +.++++|++++|+||||.+.+   
T Consensus       115 gd-~vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~i~l~~P~NPtG~~~s~~~  187 (391)
T PRK07309        115 GD-KVLLPAPAYPGYEPIVNLVGA---EIVEIDTTENDFVLTPEMLEKAILEQ---GDKLKAVILNYPANPTGVTYSREQ  187 (391)
T ss_pred             CC-EEEEeCCCCcchHHHHHHcCC---EEEEEecCCcCCcCCHHHHHHHhhcc---CCCeEEEEEECCCCCCCcCcCHHH
Confidence            46 788888899999999999888   788898865 4679999999998652   123789999999999999865   


Q ss_pred             hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCC-cccceEEEEeCchhhHhhhcCCcc
Q psy12303        243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGT-LLQCSTIHFKQDGLLISCNQMSAE  321 (480)
Q Consensus       243 l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~~~~~~~  321 (480)
                      +++|.++|++||+++++|++|+......... .+.......-.+++.|++|.++. +..+|+++.. ++.+...... ..
T Consensus       188 ~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~-~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~-~~~~~~~~~~-~~  264 (391)
T PRK07309        188 IKALADVLKKYDIFVISDEVYSELTYTGEPH-VSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAP-AEFTAQLIKS-HQ  264 (391)
T ss_pred             HHHHHHHHHHcCcEEEEEccccceeeCCCCC-CCHHHhccCCEEEEecChhhccCccceeEEEEeC-HHHHHHHHHH-Hh
Confidence            8889999999999999999998765422111 10111111223667799999974 4678888864 4444433211 11


Q ss_pred             cccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeE
Q psy12303        322 YLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVN  399 (480)
Q Consensus       322 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~  399 (480)
                      +....                    ...+...+....+  +........++..+.++++.+.|++ . ++.+. +|..+.
T Consensus       265 ~~~~~--------------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~-~p~gg~  321 (391)
T PRK07309        265 YLVTA--------------------ATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTD-L-GFKII-KPDGAF  321 (391)
T ss_pred             hcccC--------------------CChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHH-C-CCeec-CCCeeE
Confidence            11100                    1112222222222  2222344556667778889999988 4 77764 566666


Q ss_pred             EEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCC--cccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        400 VSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLND--LPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       400 v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~--~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      +.|.-.|..... +           ..++.+++. +.|+ .+.++...+  ..+++|+++.   .+.++++..+++|+++
T Consensus       322 ~~~~~l~~~~~~-~-----------~~~~~~~l~~~~gv-~v~pg~~f~~~~~~~iRi~~~---~~~~~l~~~i~~l~~~  385 (391)
T PRK07309        322 YIFAKIPAGYNQ-D-----------SFKFLQDFARKKAV-AFIPGAAFGPYGEGYVRLSYA---ASMETIKEAMKRLKEY  385 (391)
T ss_pred             EEEEECCCCCCC-C-----------HHHHHHHHHHhCCE-EEeCchhhCCCCCCEEEEEec---CCHHHHHHHHHHHHHH
Confidence            555333332110 0           124555544 5564 444433222  1579999954   2578999999999988


Q ss_pred             hcc
Q psy12303        477 GHD  479 (480)
Q Consensus       477 ~~~  479 (480)
                      +++
T Consensus       386 ~~~  388 (391)
T PRK07309        386 MEE  388 (391)
T ss_pred             HHh
Confidence            765

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.91  E-value=7.9e-22  Score=195.48  Aligned_cols=308  Identities=16%  Similarity=0.122  Sum_probs=195.2

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhH-HHHH
Q psy12303        107 APVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV-RSCA  185 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~-~~~~  185 (480)
                      .+...++|+.+.+.+++++|.+. ..++++||+.||..++.+...              ||+ .|+++...|.++ ...+
T Consensus        69 ~~~~~~lE~~~~~~la~l~g~~~-alv~~~SG~~A~~~~l~al~~--------------~GD-~Vl~~~~~~~~~~~~g~  132 (416)
T PRK13034         69 CEFVDEVEALAIERAKQLFGCDY-ANVQPHSGSQANGAVYLALLK--------------PGD-TILGMSLSHGGHLTHGA  132 (416)
T ss_pred             ChHHHHHHHHHHHHHHHHhCCCc-eEEecCCcHHHHHHHHHHhcC--------------CCC-EEEEcCccceeeeecCC
Confidence            36667788767778999999975 225678999999999988753              556 899999999872 3222


Q ss_pred             HHcCCCCCCe--EEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecc
Q psy12303        186 AVCGLGTDNC--VEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAA  262 (480)
Q Consensus       186 ~~~g~~~~~v--~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a  262 (480)
                      .....+. .+  ..++++. ++.+|++++++.++..     ++++|+++.+  .+|...|+++|.++|++||+++++|+|
T Consensus       133 ~~~~~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~-----~~klVi~~~~--~~g~~~dl~~l~~la~~~g~~livD~A  204 (416)
T PRK13034        133 KVSLSGK-WYNAVQYGVDRLTGLIDYDEVEELAKEH-----KPKLIIAGFS--AYPRELDFARFREIADEVGALLMVDMA  204 (416)
T ss_pred             cceeccc-eeeeEEcccccccCCcCHHHHHHHHhhc-----CCeEEEECCC--ccccccCHHHHHHHHHHcCCEEEEeCc
Confidence            2211110 11  2444443 4679999999988652     2778877543  468888999999999999999999999


Q ss_pred             ccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcccc
Q psy12303        263 WGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQ  342 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  342 (480)
                      |+.|....+...    ..+..+|++++++||++++|.| |+++.++..........    .+..              ++
T Consensus       205 ha~G~~~~g~~~----~~~~~~Di~~~s~~K~l~g~~G-G~v~~~~~~~~~~~~~~----~~~~--------------~~  261 (416)
T PRK13034        205 HIAGLVAAGEHP----NPFPHAHVVTTTTHKTLRGPRG-GMILTNDEEIAKKINSA----VFPG--------------LQ  261 (416)
T ss_pred             ccccCcccCCCC----CCCCCceEEEEeCcccCCCCCC-eEEEECcHHHHHHHHhh----cCCc--------------cc
Confidence            999887544321    1223689999999999987765 55555555433322211    1110              00


Q ss_pred             CCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-CceeEEEEEeecCccCCCchhhHHHH
Q psy12303        343 CGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-PEMVNVSFWYLPTRVRNMPHEKRLNI  420 (480)
Q Consensus       343 ~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~  420 (480)
                      .+... ...++..++...-..+..++.++.++++++|++.|++ . |+++..+ ....++.+.+......          
T Consensus       262 ~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~-~-G~~~~~~~~~t~i~~v~~~~~~~~----------  329 (416)
T PRK13034        262 GGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKE-R-GYDLVSGGTDNHLLLVDLRPKGLS----------  329 (416)
T ss_pred             CCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHH-c-CCEeccCCCCCcEEEEEcCCCCCC----------
Confidence            01001 1122222232221123356678999999999999999 4 9998642 3444444433221110          


Q ss_pred             hhhhhHHHHHHHHhcccEEEeee-----eeCCcccEEEEecccC----CCCHHHHHHHHHHHHHhhc
Q psy12303        421 LGEITPILKGRMMQAGTMMVGYQ-----PLNDLPNFFRNIISSA----AVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       421 l~~~~~~i~~~l~~~g~~~~~~~-----~~~~~~~~~R~~~~~~----~~t~~di~~~~~~l~~~~~  478 (480)
                          ...+.++|.+.|+.+....     ........+|++ .+.    .++++||+++++.|++++.
T Consensus       330 ----~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~-~~~~t~~~~~~~di~~l~~~l~~~~~  391 (416)
T PRK13034        330 ----GKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIG-TPAGTTRGFGEAEFREIANWILDVLD  391 (416)
T ss_pred             ----HHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeC-cHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence                1244567777785433210     001114579999 666    7779999999999998765

>KOG2862|consensus

Probab=99.91  E-value=2.6e-21  Score=171.65  Aligned_cols=347  Identities=14%  Similarity=0.126  Sum_probs=240.3

Q ss_pred             cccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCC-CCeEECCChhHHHHHHHHHHHHhcCch
Q psy12303         78 QLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQG-GDSILAPGGSISNLYAFLAARHKMFPT  156 (480)
Q Consensus        78 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~-~~~~~t~ggt~a~~~al~~~~~~~~~~  156 (480)
                      +.|+|...+..+    ..+++.+...+ .+|.+.++..++.+-+...|.... .--++..+|+.+...|+.-..+     
T Consensus        21 ~gPGPsnl~~~V----~~A~~~~~lgh-~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~le-----   90 (385)
T KOG2862|consen   21 LGPGPSNLSGRV----QEAMSRPSLGH-MSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLLE-----   90 (385)
T ss_pred             ecCCCcCCCHHH----HHhhcCCcccc-CCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhcC-----
Confidence            345665555333    33344443333 578889999999999999998854 3456777888888877755543     


Q ss_pred             hHhcCCCccCCceEEEecCCCchh--HHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCC
Q psy12303        157 YKEKGLSAIKGQLVMFTSDQCHYS--VRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGT  234 (480)
Q Consensus       157 ~~~~g~~~~~g~~~vl~~~~~h~s--~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~  234 (480)
                               ||| .|++-...-.+  +...++.+|+   +|..|+.+....+.++.+++++.+.     +|.+|+++++.
T Consensus        91 ---------Pgd-~vLv~~~G~wg~ra~D~~~r~ga---~V~~v~~~~G~~~~le~i~~~lsqh-----~p~~vfv~hgd  152 (385)
T KOG2862|consen   91 ---------PGD-NVLVVSTGTWGQRAADCARRYGA---EVDVVEADIGQAVPLEEITEKLSQH-----KPKAVFVTHGD  152 (385)
T ss_pred             ---------CCC-eEEEEEechHHHHHHHHHHhhCc---eeeEEecCcccCccHHHHHHHHHhc-----CCceEEEEecC
Confidence                     667 44443333333  3445566777   8888988888899999999999886     38999999999


Q ss_pred             CccccccC-hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhH
Q psy12303        235 TVLGAFDP-IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLI  313 (480)
Q Consensus       235 ~~~G~~~~-l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~  313 (480)
                      +.||...| ++.+.++|++|+.+++||++.+.+...+....+       ++|+.-...+|.+++|.|.+.+.+.++....
T Consensus       153 sSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDew-------gVDvaytgSQKaL~aP~GLsiisfS~ka~~~  225 (385)
T KOG2862|consen  153 SSTGVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEW-------GVDVAYTGSQKALGAPAGLSIISFSDKALEA  225 (385)
T ss_pred             ccccccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhh-------cccEEEecchhhcCCCCCcceeecCHHHHHH
Confidence            99999999 788999999999999999999999888877778       9999999999999999999998877664322


Q ss_pred             hhhcCC--cccccccccccCcccC----CCCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy12303        314 SCNQMS--AEYLFMQDKLYDVRYD----TGDKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP  386 (480)
Q Consensus       314 ~~~~~~--~~~l~~~~~~~~~~~~----~~~~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~  386 (480)
                      -..+..  ..+++....- ...|.    ++.|.  -+-+. ....+-++|..+-.+|+++.++++++++++++..|++  
T Consensus       226 ~~~rK~~~~~~yFd~~~~-~~~wgc~~e~~~yh--hT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~--  300 (385)
T KOG2862|consen  226 IRDRKTKPVSFYFDILRL-GNFWGCDGEPRAYH--HTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEA--  300 (385)
T ss_pred             HhhccCCceEEEEeHHhh-cchhccCCcccccc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            111111  2222221110 00110    11110  01001 1123445566667999999999999999999999999  


Q ss_pred             CCeEEecC---CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCH
Q psy12303        387 DKFYLILE---PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTE  463 (480)
Q Consensus       387 ~g~~~~~~---~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~  463 (480)
                      -|+++...   +....+.-.-.|...+              -+++..++++++.+-+..+-..-.+.++|+.......+.
T Consensus       301 ~GLq~fv~~e~~rlptvttv~vp~gvD--------------w~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~  366 (385)
T KOG2862|consen  301 LGLQLFVVDEELRLPTVTTVKVPYGVD--------------WKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANV  366 (385)
T ss_pred             hCccceecChhhccCcceeeecCCCCC--------------HHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCc
Confidence            68876542   2233333333343332              357888999997665554322222579999988888999


Q ss_pred             HHHHHHHHHHHHhhc
Q psy12303        464 GDIDFLLTEMDRLGH  478 (480)
Q Consensus       464 ~di~~~~~~l~~~~~  478 (480)
                      +-|+.+++.|+..++
T Consensus       367 e~i~~v~~ll~~alq  381 (385)
T KOG2862|consen  367 EYIDNVVELLKLALQ  381 (385)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999987764

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.91  E-value=3.2e-21  Score=195.41  Aligned_cols=331  Identities=13%  Similarity=0.085  Sum_probs=213.9

Q ss_pred             CcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCc
Q psy12303        101 MFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH  178 (480)
Q Consensus       101 ~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h  178 (480)
                      ...|....+..++.+.+.+++.+..|.  +++++++|+|+++|+..++.+....             ||+ .|+++.++|
T Consensus       108 ~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~-------------~gD-~Vlv~~P~y  173 (481)
T PTZ00377        108 TGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGD-------------PSD-GVMIPIPQY  173 (481)
T ss_pred             ccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccC-------------CCC-EEEECCCCc
Confidence            345666677788888988988887665  5678999999999999999887521             556 899999999


Q ss_pred             hhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHc
Q psy12303        179 YSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKY  253 (480)
Q Consensus       179 ~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~  253 (480)
                      +.+...++..|.   +++.+|+++  ++.+|+++|++++++...++.++++|++++|+||||.+.+   +++|+++|++|
T Consensus       174 ~~y~~~~~~~g~---~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~  250 (481)
T PTZ00377        174 PLYSAAITLLGG---KQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEK  250 (481)
T ss_pred             hhHHHHHHHcCC---EEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHC
Confidence            999999999998   788888874  3689999999999875544556899999999999999987   88899999999


Q ss_pred             CcEEEeeccccccccccc-cccC--cccCCCCC-----Cc-cceeCccccC-C-CcccceEEEE--eCchhhHhhhcCCc
Q psy12303        254 NMWLHVDAAWGGGLLLSK-KYRH--PRLTGIER-----AD-SVTWNPHKLM-G-TLLQCSTIHF--KQDGLLISCNQMSA  320 (480)
Q Consensus       254 ~~~l~vD~a~~~~~~~~~-~~~~--~~~~~~~~-----~D-~~~~s~hK~~-~-~p~~~g~~~~--~~~~~~~~~~~~~~  320 (480)
                      |+++++|++|+...+..+ .+..  +...++..     .. ++..|++|.+ + .+..+|++++  .++++.........
T Consensus       251 ~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~  330 (481)
T PTZ00377        251 GIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLAS  330 (481)
T ss_pred             CCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhh
Confidence            999999999987544111 1100  00111111     11 3455899964 4 4578999886  25555444332111


Q ss_pred             ccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh-----cH-------HHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK-----GD-------EGFEKQIDRLMELAEYMVKKIKSMPDK  388 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~-----g~-------~~~~~~~~~~~~l~~~l~~~l~~~~~g  388 (480)
                      .+.                   +   ...+...++...+     +.       ..+.+..++..+.++.+.+.|++ ++|
T Consensus       331 ~~~-------------------~---~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~-~~g  387 (481)
T PTZ00377        331 INL-------------------C---SNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNK-IEG  387 (481)
T ss_pred             eec-------------------C---CChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence            111                   0   1112222222222     11       11223333456778889999999 789


Q ss_pred             eEEecCCceeEEEEEeec--CccCCCchhhHHHHhhhhhHHH-HHHHHhcccEEEeeeeeCC--cccEEEEecccCCCCH
Q psy12303        389 FYLILEPEMVNVSFWYLP--TRVRNMPHEKRLNILGEITPIL-KGRMMQAGTMMVGYQPLND--LPNFFRNIISSAAVTE  463 (480)
Q Consensus       389 ~~~~~~~~~~~v~f~~~~--~~~~~~~~~~~~~~l~~~~~~i-~~~l~~~g~~~~~~~~~~~--~~~~~R~~~~~~~~t~  463 (480)
                      +++. .|+.+.++|...+  ....+.   .....+. ....+ ...+.+.|+.++....+..  ..+++|+++.   .++
T Consensus       388 ~~~~-~p~gg~fl~~~~~l~~~~~~~---~~~~~~~-~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~---~~~  459 (481)
T PTZ00377        388 VSCQ-PVEGAMYAFPRIELPEKAIQE---AKERGLA-PDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITIL---PPE  459 (481)
T ss_pred             cEee-cCCeeEEEEeeccCchhhHHH---HHhcCCC-cHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC---CCH
Confidence            8874 6777777764322  111000   0000000 01122 3445566755554433321  1469999943   578


Q ss_pred             HHHHHHHHHHHHhhcc
Q psy12303        464 GDIDFLLTEMDRLGHD  479 (480)
Q Consensus       464 ~di~~~~~~l~~~~~~  479 (480)
                      +++++.+++|++++++
T Consensus       460 e~l~~~l~rl~~~~~~  475 (481)
T PTZ00377        460 EQIEEMVKKIKEFHES  475 (481)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8999999999887653

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.91  E-value=4.2e-21  Score=187.27  Aligned_cols=309  Identities=12%  Similarity=0.064  Sum_probs=206.7

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHhCC--CCC-CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCc
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQIIGW--QGG-DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH  178 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~g~--~~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h  178 (480)
                      ..|....+..++.+.+.+++.+..|.  +++ ++++|+|+++|+..++.++.+.        |.   +|+ .|+++.++|
T Consensus        30 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~~--------g~---~~d-~Vl~~~p~y   97 (350)
T TIGR03537        30 SQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDP--------EE---DRR-RVIFGTPGY   97 (350)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcCC--------CC---CCc-eEEEcCCCC
Confidence            44655556678888989999888785  555 8999999999998888776541        11   113 899999999


Q ss_pred             hhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHc
Q psy12303        179 YSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKY  253 (480)
Q Consensus       179 ~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~  253 (480)
                      +.+..+++.+|.   +++.++.++  ++.+|++++++++.+.      +++|++++++||||.+.+   +++|.++|++|
T Consensus        98 ~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~~~~~------~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~  168 (350)
T TIGR03537        98 PVYERGALFAGG---EPTAVKLKKEDGFLLRLEKVEKSILEE------TKIVWINYPHNPTGATAPRSYLKETIAMCREH  168 (350)
T ss_pred             cchHHHHHhcCC---EEEEcccCcccCCccCHHHHHHhhhhc------cEEEEEeCCCCCcCcccCHHHHHHHHHHHHHc
Confidence            999999999998   888998863  3568999999998765      889999999999999987   88999999999


Q ss_pred             CcEEEeeccccccccccccccCcccCCCC-CCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccC
Q psy12303        254 NMWLHVDAAWGGGLLLSKKYRHPRLTGIE-RADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYD  331 (480)
Q Consensus       254 ~~~l~vD~a~~~~~~~~~~~~~~~~~~~~-~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  331 (480)
                      |+++++|++|+......+..   ...... .-.+++.|++|.++.| ...|+++ .++............+..       
T Consensus       169 ~~~ii~De~y~~~~~~~~~~---~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~-~~~~~~~~~~~~~~~~~~-------  237 (350)
T TIGR03537       169 GIILCSDECYTEIYFGEPPH---SALEVGIENVLAFHSLSKRSGMTGYRSGFVA-GDEKLISFLRKLRANFGV-------  237 (350)
T ss_pred             CcEEEEeccccccccCCCCC---chhhcCcCCEEEEeecccccCCccccceeee-cCHHHHHHHHHHHHhhcc-------
Confidence            99999999998654321110   111111 1235666899998644 5678776 455444433221111110       


Q ss_pred             cccCCCCccccCCCCCCchHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccC
Q psy12303        332 VRYDTGDKVIQCGRHNDIFKLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVR  410 (480)
Q Consensus       332 ~~~~~~~~~~~~~r~~~~l~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~  410 (480)
                                  +  ...+...++...+ ..+.+++..++..++.+.+.+.|.+  .|+++. +|..+.+++...|....
T Consensus       238 ------------~--~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~--~g~~~~-~~~g~~~~~~~~~~~~~  300 (350)
T TIGR03537       238 ------------A--SPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNK--VGLEYL-YPDATFYLWVKVPSGID  300 (350)
T ss_pred             ------------C--CCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH--CCCccc-CCCeEEEEEEECCCCCC
Confidence                        0  0111111111222 2345566777788888899999998  477764 66666655443332211


Q ss_pred             CCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        411 NMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       411 ~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                                    ..++.+.|.++|+.+.....+.. ..+++|+++.   .+++++++.++.++++
T Consensus       301 --------------~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~~---~~~~~~~~~l~~~~~~  350 (350)
T TIGR03537       301 --------------AKDYALRLLENGIVVAPGENFGSGEEGYVRVALV---PTLEECEEALRLWERV  350 (350)
T ss_pred             --------------HHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEec---CCHHHHHHHHHHHhcC
Confidence                          23567788888855443322211 1479999943   4789999999988753

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.91  E-value=1.5e-21  Score=192.80  Aligned_cols=296  Identities=13%  Similarity=0.119  Sum_probs=192.9

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++++++++|.++.++++|+|+|+|+..++.++..              +|+ .|+++.+.|..+...+...|.   +
T Consensus        69 ~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~~--------------~gd-~vl~~~p~y~~~~~~~~~~g~---~  130 (380)
T PRK06225         69 PELRELILKDLGLDDDEALITAGATESLYLVMRAFLS--------------PGD-NAVTPDPGYLIIDNFASRFGA---E  130 (380)
T ss_pred             HHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhcC--------------CCC-EEEEcCCCCcchHHHHHHhCc---e
Confidence            4567888999999888999999999999999887643              445 688888888888888888888   7


Q ss_pred             eEEeeCCC---CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCcEEEeecccccccc
Q psy12303        195 CVEVPSDK---RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLL  268 (480)
Q Consensus       195 v~~v~~~~---~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~  268 (480)
                      ++.+|++.   ++.+|++++++.+++.      +++|++++++||+|.+.+   +++|.++|+++|+++++|++|+.+..
T Consensus       131 ~~~v~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~  204 (380)
T PRK06225        131 VIEVPIYSEECNYKLTPELVKENMDEN------TRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAR  204 (380)
T ss_pred             EEeeccccccCCccCCHHHHHhhcCCC------ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhc
Confidence            88888742   4689999999988754      789999999999999754   89999999999999999999975432


Q ss_pred             ccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC
Q psy12303        269 LSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN  347 (480)
Q Consensus       269 ~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~  347 (480)
                      ....    .........+++.+++|+++.| ..+|+++.+ +...+.......    .            .+   +....
T Consensus       205 ~~~~----~~~~~~~~~i~~~s~SK~~g~~G~RiG~i~~~-~~l~~~~~~~~~----~------------~~---~~~~~  260 (380)
T PRK06225        205 EHTL----AAEYAPEHTVTSYSFSKIFGMAGLRIGAVVAT-PDLIEVVKSIVI----N------------DL---GTNVI  260 (380)
T ss_pred             cCCc----hhhcCCCCEEEEeechhhcCCccceeEEEecC-HHHHHHHHHHHh----c------------cc---CCCHH
Confidence            1110    0000013345666889999743 558999874 444443221100    0            00   00001


Q ss_pred             CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec-CCceeEEEEEeecCccCCCchhhHHHHhhhhhH
Q psy12303        348 DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL-EPEMVNVSFWYLPTRVRNMPHEKRLNILGEITP  426 (480)
Q Consensus       348 ~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~-~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~  426 (480)
                      ....+...+.. ..+.+++..+...++.+.+.+.|++ ++++.+.. ++..+.+.+.+.+....              ..
T Consensus       261 ~~~~a~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~~~~~~~--------------~~  324 (380)
T PRK06225        261 AQEAAIAGLKV-KDEWIDRIRRTTFKNQKLIKEAVDE-IEGVFLPVYPSHGNMMVIDISEAGID--------------PE  324 (380)
T ss_pred             HHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHh-CcCCccccCCCCCeEEEEEcccccCC--------------HH
Confidence            11112222222 2233444555566677888888988 77764422 33333333332221111              23


Q ss_pred             HHHHHHHhcccEEEeeeee----CCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        427 ILKGRMMQAGTMMVGYQPL----NDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       427 ~i~~~l~~~g~~~~~~~~~----~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ++.+.|.+.|+. +.++..    .+ .+++|+++ .  .++++++++++.|++++++
T Consensus       325 ~l~~~l~~~gi~-v~~g~~~~~~~~-~~~iR~s~-~--~~~e~l~~~~~~l~~~~~~  376 (380)
T PRK06225        325 DLVEYLLERKIF-VRQGTYTSKRFG-DRYIRVSF-S--IPREQVEVFCEEFPDVVET  376 (380)
T ss_pred             HHHHHHHHCCEE-EcCCcccCcCCC-CceEEEEe-C--CCHHHHHHHHHHHHHHHHH
Confidence            566777778754 433221    12 46999994 3  3789999999999988764

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.90  E-value=2.5e-21  Score=194.74  Aligned_cols=321  Identities=13%  Similarity=0.142  Sum_probs=213.0

Q ss_pred             hhcChhhHHHHHHHHHHHHHHhC----CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCch
Q psy12303        104 YEIAPVFILMETVVLEKMRQIIG----WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHY  179 (480)
Q Consensus       104 ~~~~~~~~~~e~~~~~~la~~~g----~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~  179 (480)
                      |....+...+.+++++++.+.+|    ++++++++|+|+++++..++.+..+              ||+ .|+++.++|+
T Consensus        82 Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~--------------pGd-~Vlv~~P~Y~  146 (468)
T PLN02450         82 FQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAE--------------PGD-AFLLPTPYYP  146 (468)
T ss_pred             CCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCC--------------CCC-EEEECCCCCC
Confidence            43344556788888888887766    4667899999999999888887754              556 8999999999


Q ss_pred             hHHHHHH-HcCCCCCCeEEeeCC--CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHc
Q psy12303        180 SVRSCAA-VCGLGTDNCVEVPSD--KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKY  253 (480)
Q Consensus       180 s~~~~~~-~~g~~~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~  253 (480)
                      .+...+. ..|.   +++.||++  +++.+|+++|++++++..+.+.++++|++++|+||||.+.+   +++|.++|++|
T Consensus       147 ~~~~~~~~~~g~---~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~  223 (468)
T PLN02450        147 GFDRDLKWRTGV---EIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAK  223 (468)
T ss_pred             chHHHHhhcCCc---EEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHC
Confidence            8888777 4677   78888875  45688999999999876556667999999999999999976   66788889999


Q ss_pred             CcEEEeeccccccccccccccC--cccC-----CC--CCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccc
Q psy12303        254 NMWLHVDAAWGGGLLLSKKYRH--PRLT-----GI--ERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYL  323 (480)
Q Consensus       254 ~~~l~vD~a~~~~~~~~~~~~~--~~~~-----~~--~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l  323 (480)
                      |+++++|++|+...+..+.+..  +...     +.  ..--++..+++|.++ .+..+|+++..+.......... ..+.
T Consensus       224 ~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~-~~~~  302 (468)
T PLN02450        224 NIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKM-SSFG  302 (468)
T ss_pred             CcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHH-hhcC
Confidence            9999999999975442211111  0110     00  011246679999997 5588999987655433322211 1110


Q ss_pred             cccccccCcccCCCCccccCCCCCCchHHHHHHHHhcH-----HHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCcee
Q psy12303        324 FMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGD-----EGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMV  398 (480)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~-----~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~  398 (480)
                       .                     ...+...++...+..     ..+++..++..+..+.+.+.|++ . |+.+ .+|..+
T Consensus       303 -~---------------------~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~-~-gi~~-~~~~~g  357 (468)
T PLN02450        303 -L---------------------VSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEA-A-GIKC-LKSNAG  357 (468)
T ss_pred             -C---------------------CCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-c-CCcc-cCCCce
Confidence             0                     111222222222211     24667778888889999999998 4 8876 467777


Q ss_pred             EEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeCC--cccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        399 NVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLND--LPNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       399 ~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~~--~~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                      .++|.-.+......   .+..     ..++.+.+.+ .|+ .+.++...+  ..+++|+++..  .++++++..+++|++
T Consensus       358 ~flwi~l~~~~~~~---~~~~-----~~~l~~~ll~~~gV-~v~PG~~f~~~~~g~~Rl~f~~--~~~~~l~~~l~ri~~  426 (468)
T PLN02450        358 LFCWVDMRHLLKSN---TFEA-----EMELWKKIVYEVKL-NISPGSSCHCTEPGWFRVCFAN--MSEETLDLAMKRLKS  426 (468)
T ss_pred             EEEEEEchHhcCcC---CchH-----HHHHHHHHHHhCCE-EEeCccccCCCCCCEEEEEecC--CCHHHHHHHHHHHHH
Confidence            67664433222110   1111     1245566655 564 444433222  15799999543  368999999999988


Q ss_pred             hhcc
Q psy12303        476 LGHD  479 (480)
Q Consensus       476 ~~~~  479 (480)
                      ++++
T Consensus       427 ~l~~  430 (468)
T PLN02450        427 FVES  430 (468)
T ss_pred             HHHh
Confidence            7643

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.90  E-value=1.2e-21  Score=194.85  Aligned_cols=300  Identities=15%  Similarity=0.142  Sum_probs=194.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG  191 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~  191 (480)
                      ....++.+.+++++|.+  ..+++++|++||..++..++...            +++ .|+.+...|.++..++...|. 
T Consensus        90 ~~~~~Le~~la~~~g~~--~~l~~~sG~~an~~ai~~l~~~~------------~~~-~v~~~~~~h~s~~~~~~~~g~-  153 (402)
T TIGR01821        90 IPHVELEAELADLHGKE--SALVFTSGYVANDATLATLAKII------------PGC-VIFSDELNHASMIEGIRHSGA-  153 (402)
T ss_pred             HHHHHHHHHHHHHhCCC--eEEEECchHHHHHHHHHHhhCCC------------CCC-EEEEcchHhHHHHHHHHHcCC-
Confidence            34456777799999965  37888889999999998876420            223 777777789999888888776 


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                        ++..++.+     |++++++.++...  ...+++|+++++++++|.+.|+++|.++|++||+++++|+||+.+.+. +
T Consensus       154 --~~~~~~~~-----d~~~l~~~l~~~~--~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g-~  223 (402)
T TIGR01821       154 --EKFIFRHN-----DVAHLEKLLQSVD--PNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYG-P  223 (402)
T ss_pred             --eEEEECCC-----CHHHHHHHHHhcc--CCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccC-C
Confidence              55555443     7888988886431  124789999999999999999999999999999999999999965431 1


Q ss_pred             cccC-cccCCC-CCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCc
Q psy12303        272 KYRH-PRLTGI-ERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI  349 (480)
Q Consensus       272 ~~~~-~~~~~~-~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~  349 (480)
                      .... ....++ +.+|++..++.|.++.+.  |+++ .+++..........+|.+..                ...+...
T Consensus       224 ~g~g~~~~~~~~~~~div~~t~sKa~g~~G--G~i~-~~~~~~~~l~~~~~~~~~t~----------------~~~~~~~  284 (402)
T TIGR01821       224 RGGGIAERDGLMHRIDIIEGTLAKAFGVVG--GYIA-ASRKLIDAIRSYAPGFIFTT----------------SLPPAIA  284 (402)
T ss_pred             CCCccchhccCCCCCeEEEEechhhhccCC--ceee-cCHHHHHHHHHhCcCceecC----------------cCCHHHH
Confidence            1110 011122 246888889999998633  5544 44444443322222222110                0000122


Q ss_pred             hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHH
Q psy12303        350 FKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILK  429 (480)
Q Consensus       350 l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~  429 (480)
                      .++.++++.+..  ...+.++..++++++.+.|++  .|++++ ++..+++.+.. +..       .       ...++.
T Consensus       285 aaa~aaL~~~~~--~~~~~~~~~~~~~~l~~~L~~--~g~~~~-~~~~~i~~i~~-~~~-------~-------~a~~~~  344 (402)
T TIGR01821       285 AGATASIRHLKE--SQDLRRAHQENVKRLKNLLEA--LGIPVI-PNPSHIVPVII-GDA-------A-------LCKKVS  344 (402)
T ss_pred             HHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHHHH--cCCCcC-CCCCCEEEEEe-CCH-------H-------HHHHHH
Confidence            233334443321  244556667899999999998  477765 34445444422 110       0       124567


Q ss_pred             HHHHhc-ccEEEeeeee----CCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        430 GRMMQA-GTMMVGYQPL----NDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       430 ~~l~~~-g~~~~~~~~~----~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ++|.++ | +++.+...    .+ ..++|++ ++..+|++||++++++|+++.++
T Consensus       345 ~~L~~~~G-i~v~~~~~p~~~~g-~~~lRis-~~~~~t~edi~~~~~~l~~~~~~  396 (402)
T TIGR01821       345 DLLLNKHG-IYVQPINYPTVPRG-TERLRIT-PTPAHTDKMIDDLVEALLLVWDR  396 (402)
T ss_pred             HHHHhcCC-EEEEeECCCCCCCC-CceEEEE-eCCCCCHHHHHHHHHHHHHHHHH
Confidence            777655 6 44443221    12 4689999 88999999999999999988765

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PLN02822 serine palmitoyltransferase

Probab=99.90  E-value=7.1e-21  Score=191.49  Aligned_cols=313  Identities=15%  Similarity=0.110  Sum_probs=204.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        110 FILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      ......++++.+++++|.+. .+++++|++ ++..++.+..+              +|+ .|++....|+++..++.+.|
T Consensus       152 ~~~~~~~Lee~La~~~~~~~-~i~~s~G~~-a~~sai~a~~~--------------~gd-~Ii~d~~~H~s~~~~~~ls~  214 (481)
T PLN02822        152 TIDVHLDCETKIAKFLGTPD-SILYSYGLS-TIFSVIPAFCK--------------KGD-IIVADEGVHWGIQNGLYLSR  214 (481)
T ss_pred             CHHHHHHHHHHHHHHhCCCC-EEEECCHHH-HHHHHHHHhCC--------------CCC-EEEEeCCccHHHHHHHHHcC
Confidence            35566677788999999764 577776665 67777776643              445 78899999999999998887


Q ss_pred             CCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHC---CCcc-EEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccc
Q psy12303        190 LGTDNCVEVPSDKRGRLIPSELERLVLERKAK---GDIP-FFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGG  265 (480)
Q Consensus       190 ~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~---~~~~-~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~  265 (480)
                      .   ++++++.+     |.++++..+++....   ..++ ++|+++.+++++|.+.|+++|.++|++||+++++|++|+.
T Consensus       215 ~---~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~  286 (481)
T PLN02822        215 S---TIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSF  286 (481)
T ss_pred             C---eEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccc
Confidence            6   77888876     677888877654322   1224 7999999999999999999999999999999999999996


Q ss_pred             ccccc-ccccCcccCCC--CCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcccc
Q psy12303        266 GLLLS-KKYRHPRLTGI--ERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQ  342 (480)
Q Consensus       266 ~~~~~-~~~~~~~~~~~--~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  342 (480)
                      +.+-- ...-. ...++  ..+|+++.+++|.++. .| |+++ .++..++........|.+.....             
T Consensus       287 gvlG~~G~G~~-e~~~v~~~~~dii~~s~sKalg~-~G-G~i~-g~~~ii~~~~~~~~~~~fsa~lP-------------  349 (481)
T PLN02822        287 GVLGKSGRGLS-EHFGVPIEKIDIITAAMGHALAT-EG-GFCT-GSARVVDHQRLSSSGYVFSASLP-------------  349 (481)
T ss_pred             cccCCCCCChH-HHcCCCCCCCeEEEecchhhhhh-CC-eEEE-cCHHHHHHHHhcCCceeeccccC-------------
Confidence            65421 10000 12223  3679999999999984 22 5544 55555554332222232211000             


Q ss_pred             CCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhh
Q psy12303        343 CGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILG  422 (480)
Q Consensus       343 ~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~  422 (480)
                         ...+.++..+++.+  +...++.++.++++++|.+.|++ .+|+.+..++...++.+.+ +........+   .   
T Consensus       350 ---p~~~~Aa~~aL~~l--~~~~~~~~~l~~~~~~l~~~L~~-~~g~~~~~~~~spi~~l~l-~~~~~~~~~~---~---  416 (481)
T PLN02822        350 ---PYLASAAITAIDVL--EDNPSVLAKLKENIALLHKGLSD-IPGLSIGSNTLSPIVFLHL-EKSTGSAKED---L---  416 (481)
T ss_pred             ---HHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHh-cCCcccCCCCCCCEEEEEe-CCCcccccch---H---
Confidence               01112222344332  22356788999999999999999 7788875445444444443 2210000000   0   


Q ss_pred             hhhHHHHHHHH-hcccEEEeeeee--CC---cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        423 EITPILKGRMM-QAGTMMVGYQPL--ND---LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       423 ~~~~~i~~~l~-~~g~~~~~~~~~--~~---~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ....++.++|. ++|++ +.+...  .+   .+..+|++ .+..+|++||++++++|++++++
T Consensus       417 ~~~~~~~~~Ll~e~GV~-v~~~~~~~~~~~~~~~~lRi~-is~~~t~edI~~~~~~l~~~~~~  477 (481)
T PLN02822        417 SLLEHIADRMLKEDSVL-VVVSKRSTLDKCRLPVGIRLF-VSAGHTESDILKASESLKRVAAS  477 (481)
T ss_pred             HHHHHHHHHHHhcCCEE-EEeeCCCCcCCCCCCCcEEEE-ECCCCCHHHHHHHHHHHHHHHHH
Confidence            01246778887 66744 443211  11   13479999 78889999999999999987654

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.90  E-value=5.7e-21  Score=188.86  Aligned_cols=310  Identities=10%  Similarity=0.083  Sum_probs=204.3

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHhCC--CCC-CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCc
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQIIGW--QGG-DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH  178 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~g~--~~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h  178 (480)
                      ..|....+..++.+.+++++.+.+|.  ++. ++++|+|+++++..++.+..+              ||+ .|+++.++|
T Consensus        61 ~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~--------------~gd-~vlv~~P~y  125 (383)
T TIGR03540        61 HRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVN--------------PGD-IVLVPDPGY  125 (383)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhCC--------------CCC-EEEEeCCCC
Confidence            44554455678888888898888776  344 588999999999988877643              556 889999999


Q ss_pred             hhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHc
Q psy12303        179 YSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKY  253 (480)
Q Consensus       179 ~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~  253 (480)
                      +.+..+++.+|.   +++.+|.++  ++.+|++++++++.+.      +++|++++|+||||.+.+   +++|.++|++|
T Consensus       126 ~~~~~~~~~~G~---~v~~v~~~~~~g~~~d~~~l~~~~~~~------~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~  196 (383)
T TIGR03540       126 PVYRIGTLFAGG---EPYEMPLKEENGFLPDFDAIPEDIAKK------AKLMFINYPNNPTGAVAPLKFFKELVEFAKEY  196 (383)
T ss_pred             cchHHHHHhcCC---EEEEEecCcccCCccCHHHHHhhcccc------ceEEEEeCCCCCcCccCCHHHHHHHHHHHHHc
Confidence            999999999998   889999874  3568999999888654      889999999999999987   68899999999


Q ss_pred             CcEEEeeccccccccccccccC-cccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccC
Q psy12303        254 NMWLHVDAAWGGGLLLSKKYRH-PRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYD  331 (480)
Q Consensus       254 ~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  331 (480)
                      |+++++|++|+........... ..+.+.....+.+.|+.|.++.| ..+|+++. +++...........+...      
T Consensus       197 ~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~-~~~l~~~~~~~~~~~~~~------  269 (383)
T TIGR03540       197 NIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVG-NADLIAGLGKVKTNVDSG------  269 (383)
T ss_pred             CEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeC-CHHHHHHHHHHHHhcccC------
Confidence            9999999999865442111000 01111112346667899999643 56898874 455544332111100000      


Q ss_pred             cccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCC
Q psy12303        332 VRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRN  411 (480)
Q Consensus       332 ~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~  411 (480)
                                  ........+...+.. +.+.+++..+...+.++.+.+.|++ . ++.+. +|..+.++|...+.... 
T Consensus       270 ------------~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~-~~~~~~~~~~~l~~~~~-  332 (383)
T TIGR03540       270 ------------VFQAIQYAAIAALNG-PQDVVKEIRKIYQRRRDLLLEALKK-I-GIDVE-KPKATFYVWVPVPEGYT-  332 (383)
T ss_pred             ------------CChHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHh-C-CCEec-CCCcceEEEEECCCCCC-
Confidence                        000111122222222 3566677778888899999999999 4 88875 55566555544433211 


Q ss_pred             CchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        412 MPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       412 ~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                                   ..++...+. +.|+.+.....+.. ..+++|+++.   .++++++..++.|.+
T Consensus       333 -------------~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~---~~~~~l~~~l~~l~~  382 (383)
T TIGR03540       333 -------------SAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLT---VPDERLEEAVARIKK  382 (383)
T ss_pred             -------------HHHHHHHHHHHCCEEEecchhhCccCCCeEEEEec---CCHHHHHHHHHHHhh
Confidence                         235566664 45644443222221 1469999953   357888888887764

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.90  E-value=1.7e-21  Score=193.94  Aligned_cols=304  Identities=18%  Similarity=0.170  Sum_probs=201.8

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHc
Q psy12303        109 VFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVC  188 (480)
Q Consensus       109 ~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~  188 (480)
                      +..++.+++++++++++|.+ ..+++|+ |++++..++.++.+              ||+ .|++++.+|+++...+...
T Consensus        84 G~~~l~~~l~~~la~~~g~~-~~i~~ts-G~~a~~~~~~~l~~--------------~gd-~vi~~~~~~~~~~~~~~~~  146 (397)
T PRK06939         84 GTQDLHKELEEKLAKFLGTE-DAILYSS-CFDANGGLFETLLG--------------KED-AIISDALNHASIIDGVRLC  146 (397)
T ss_pred             CCcHHHHHHHHHHHHHhCCC-cEEEEcC-hHHHHHHHHHHhCC--------------CCC-EEEEEhhhhHHHHHHHHhc
Confidence            44677888999999999976 3455555 58888888766543              556 8889999999999999888


Q ss_pred             CCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccc
Q psy12303        189 GLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLL  268 (480)
Q Consensus       189 g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~  268 (480)
                      |.   +++.++.     .|++++++.+++....+.++++|+..+..+++|.+.++++|.++|++||+|+++|++|+.+..
T Consensus       147 ~~---~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~  218 (397)
T PRK06939        147 KA---KRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFV  218 (397)
T ss_pred             CC---ceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCc
Confidence            87   5666654     489999999876433333588888888889999999999999999999999999999975433


Q ss_pred             ccc-cccCcccCCC-CCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC
Q psy12303        269 LSK-KYRHPRLTGI-ERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH  346 (480)
Q Consensus       269 ~~~-~~~~~~~~~~-~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~  346 (480)
                      ... .... ...++ +++|+++.|+||+++++ ..|+++.+ +..++.......++...                 ++..
T Consensus       219 ~~~~~~~~-~~~~~~~~~~i~~~S~sK~~~g~-r~G~v~~~-~~~~~~l~~~~~~~~~~-----------------~~~~  278 (397)
T PRK06939        219 GENGRGTV-EHFGVMDRVDIITGTLGKALGGA-SGGYTAGR-KEVIDWLRQRSRPYLFS-----------------NSLA  278 (397)
T ss_pred             CCCCCCHH-HHcCCCCCCcEEEEECHHHhCcc-CceEEEeC-HHHHHHHHHhCcccccc-----------------CCCC
Confidence            211 0001 11122 25789999999999654 56777754 44554433221122111                 0000


Q ss_pred             C-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhh
Q psy12303        347 N-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEIT  425 (480)
Q Consensus       347 ~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~  425 (480)
                      . ...++..+++.+  +...++.++..++++++.+.|++ . ++++. ++....+.+.. +..            .+  .
T Consensus       279 ~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~-~~~~~~~~~~~-~~~------------~~--~  338 (397)
T PRK06939        279 PAIVAASIKVLELL--EESDELRDRLWENARYFREGMTA-A-GFTLG-PGEHPIIPVML-GDA------------KL--A  338 (397)
T ss_pred             HHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHH-c-CCCcC-CCCCCEEEEEE-CCH------------HH--H
Confidence            1 122233334433  12246678888999999999998 4 67653 34444433321 111            00  2


Q ss_pred             HHHHHHHHhcccEEEeeeeeC---CcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        426 PILKGRMMQAGTMMVGYQPLN---DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       426 ~~i~~~l~~~g~~~~~~~~~~---~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .++.+.|.++|+.+. ...+.   ...+++|++ ++..+++++|++++++|++++++
T Consensus       339 ~~~~~~L~~~gI~v~-~~~~~~~~~~~~~iRi~-~~~~~~~~~i~~~l~~L~~~~~~  393 (397)
T PRK06939        339 QEFADRLLEEGVYVI-GFSFPVVPKGQARIRTQ-MSAAHTKEQLDRAIDAFEKVGKE  393 (397)
T ss_pred             HHHHHHHHHCCceEe-eeCCCCCCCCCceEEEE-ECCCCCHHHHHHHHHHHHHHHHH
Confidence            467788888885544 32221   114689999 77778999999999999988764

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.90  E-value=3.4e-21  Score=191.34  Aligned_cols=337  Identities=13%  Similarity=0.095  Sum_probs=214.3

Q ss_pred             HHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccC
Q psy12303         89 AGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIK  166 (480)
Q Consensus        89 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~  166 (480)
                      +.+.+...+......|....+..++.+.+.+++++.+|.  .++++++|+|+++|+..++.+..+              |
T Consensus        51 ~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~~--------------~  116 (402)
T PRK06107         51 IKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLE--------------A  116 (402)
T ss_pred             HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhcC--------------C
Confidence            345555544433344655556678888999999998887  457899999999999988876543              4


Q ss_pred             CceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC--
Q psy12303        167 GQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP--  242 (480)
Q Consensus       167 g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~--  242 (480)
                      |+ .|+++.++|+.+...+...+.   .++.++.+.  ++.+|++++++++++.      +++|++++++||||.+.+  
T Consensus       117 gd-~vl~~~p~y~~y~~~~~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~s~~  186 (402)
T PRK06107        117 GD-EVIIPAPYWVSYPDMVLANDG---TPVIVACPEEQGFKLTPEALEAAITPR------TRWLILNAPSNPTGAVYSRA  186 (402)
T ss_pred             CC-EEEEecCCCcCHHHHHHHcCC---EEEEecCCcccCCCCCHHHHHhhcCcC------ceEEEEECCCCCCCcCcCHH
Confidence            55 788888888887777777765   566777653  4679999999988653      788999999999998876  


Q ss_pred             -hHHHHHHHHHc-CcEEEeeccccccccccccccC--cccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhc
Q psy12303        243 -IEEIADICQKY-NMWLHVDAAWGGGLLLSKKYRH--PRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQ  317 (480)
Q Consensus       243 -l~~I~~i~~~~-~~~l~vD~a~~~~~~~~~~~~~--~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~  317 (480)
                       +++|+++|++| ++++++|++|+...+.......  ....+...--++..|++|.++ .+..+|+++. ++........
T Consensus       187 ~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~-~~~~~~~~~~  265 (402)
T PRK06107        187 ELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAG-PADLIAAINK  265 (402)
T ss_pred             HHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeec-CHHHHHHHHH
Confidence             57778888998 9999999999865432111111  011111122355668899997 4467899875 4444443221


Q ss_pred             CCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC
Q psy12303        318 MSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP  395 (480)
Q Consensus       318 ~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~  395 (480)
                      .. .+..                    .....+...++...+  +...+++..+...+.++.+.+.|++ ++|+.+ .+|
T Consensus       266 ~~-~~~~--------------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~g~~~-~~p  322 (402)
T PRK06107        266 LQ-SQSS--------------------SCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNA-IPGLSC-LVP  322 (402)
T ss_pred             HH-Hhcc--------------------cCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhc-CCCCcc-cCC
Confidence            11 0000                    001222333333333  3455677777888889999999988 778876 467


Q ss_pred             ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHH-HhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        396 EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRM-MQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       396 ~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                      ..+.++|...+.-.........  ... ...++...+ .+.|+++. ++...+..+++|+++.   .+++++++.++.|.
T Consensus       323 ~gg~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~l~~~~gv~v~-pg~~Fg~~~~iRis~~---~~~e~l~~~l~~l~  395 (402)
T PRK06107        323 DGAFYLYVNCAGLIGKTTPEGK--VLE-TDQDVVLYLLDSAGVAVV-QGTAYGLSPYFRLSIA---TSLETLEEACARIE  395 (402)
T ss_pred             CcceEEeeeccccccccccccc--CCC-CHHHHHHHHHHhCCEEEe-CccccCCCCeEEEEeC---CCHHHHHHHHHHHH
Confidence            7777666433210000000000  000 012444444 45675444 4444444679999955   36999999999999


Q ss_pred             HhhccC
Q psy12303        475 RLGHDL  480 (480)
Q Consensus       475 ~~~~~l  480 (480)
                      +.++++
T Consensus       396 ~~l~~~  401 (402)
T PRK06107        396 RAVAAL  401 (402)
T ss_pred             HHHHhc
Confidence            887653

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.90  E-value=6.6e-21  Score=188.22  Aligned_cols=325  Identities=12%  Similarity=0.112  Sum_probs=213.5

Q ss_pred             HHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCC
Q psy12303         86 VSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLS  163 (480)
Q Consensus        86 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~  163 (480)
                      +.++.+.+....+ ....|....+...+.+.+++++.+..|.  +++++++|+|+++|+..++.+...            
T Consensus        45 ~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~------------  111 (384)
T PRK06348         45 ESIINAAFEDAKK-GHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILD------------  111 (384)
T ss_pred             HHHHHHHHHHHhc-CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhcC------------
Confidence            4444444443322 2344555555667888888888877664  668999999999999999887754            


Q ss_pred             ccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCC--CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc
Q psy12303        164 AIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD--KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD  241 (480)
Q Consensus       164 ~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~  241 (480)
                        ||+ .|+++.++|+.+..++..+|.   +++.+|.+  +++.+|+++|++++++.      +++|++++++||||.+.
T Consensus       112 --~gd-~vlv~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~  179 (384)
T PRK06348        112 --PGD-EVIIHEPYFTPYKDQIEMVGG---KPIILETYEEDGFQINVKKLEALITSK------TKAIILNSPNNPTGAVF  179 (384)
T ss_pred             --CCC-EEEEeCCCCcchHHHHHHcCC---EEEEecCCcCcCCcCCHHHHHHhhCcC------ccEEEEeCCCCCCCcCC
Confidence              556 788999999999999999987   77788864  34679999999988654      78888899999999997


Q ss_pred             C---hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhc
Q psy12303        242 P---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQ  317 (480)
Q Consensus       242 ~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~  317 (480)
                      +   +++|.++|+++|+++++|++|+.............+.+...-.+++.|++|.++ .+..+|+++.. +........
T Consensus       180 s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~-~~~~~~~~~  258 (384)
T PRK06348        180 SKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAP-DYIIETAKI  258 (384)
T ss_pred             CHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeeecC-HHHHHHHHH
Confidence            6   788888899999999999999987542211110012222233466779999998 55789998864 444333221


Q ss_pred             CCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC
Q psy12303        318 MSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP  395 (480)
Q Consensus       318 ~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~  395 (480)
                      ........                     ...+...++...+  ..+..++..+...+.++++.+.|++ ++++++ .+|
T Consensus       259 ~~~~~~~~---------------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~-~~~~~~-~~p  315 (384)
T PRK06348        259 INEGICFS---------------------APTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIES-IPNLSL-HPP  315 (384)
T ss_pred             HHHhccCC---------------------CCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc-CCCcee-ccC
Confidence            11000000                     1112222222222  2344566677777888889999998 778776 467


Q ss_pred             ceeEEEEEeecC-ccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHH
Q psy12303        396 EMVNVSFWYLPT-RVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTE  472 (480)
Q Consensus       396 ~~~~v~f~~~~~-~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~  472 (480)
                      +.+.++|.-.+. ...              ..++.+.+.+ .|+.+.....+.. ..+++|+++ .  .++++++..+++
T Consensus       316 ~gg~~~~~~~~~~~~~--------------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~-~--~~~~~l~~al~~  378 (384)
T PRK06348        316 KGSIYAFINIKKTGLS--------------SVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLAC-T--VGIEVLEEAFNR  378 (384)
T ss_pred             CeeEEEEEecccCCCC--------------HHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEe-c--CCHHHHHHHHHH
Confidence            777766543331 111              2345666654 5654443222221 147999994 3  478999999999


Q ss_pred             HHHh
Q psy12303        473 MDRL  476 (480)
Q Consensus       473 l~~~  476 (480)
                      |+++
T Consensus       379 l~~~  382 (384)
T PRK06348        379 IEKM  382 (384)
T ss_pred             HHhh
Confidence            8765

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.90  E-value=1.8e-21  Score=193.98  Aligned_cols=299  Identities=16%  Similarity=0.178  Sum_probs=193.6

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      -.++.+.+++++|.+.  .+++++|++||..++..+...            .||+ +|+++...|.++..++...|.   
T Consensus        93 ~~~Le~~la~~~g~~~--~i~~~sG~~a~~~~i~~l~~~------------~~g~-~vi~~~~~h~s~~~~~~~~g~---  154 (410)
T PRK13392         93 HVLLERELADLHGKES--ALLFTSGYVSNDAALSTLGKL------------LPGC-VILSDALNHASMIEGIRRSGA---  154 (410)
T ss_pred             HHHHHHHHHHHhCCCC--EEEECcHHHHHHHHHHHHhcC------------CCCC-EEEEehhhhHHHHHHHHHcCC---
Confidence            3466777999999743  566667789999888755321            1445 788888899999888888776   


Q ss_pred             CeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccc
Q psy12303        194 NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       194 ~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~  273 (480)
                      ++..++.+     |.+.+++.++...  ..++++|++++++|++|.+.|+++|.++|++||+++++|+||+.+.+.....
T Consensus       155 ~~~~~~~~-----d~~~l~~~l~~~~--~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~  227 (410)
T PRK13392        155 EKQVFRHN-----DLADLEEQLASVD--PDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGG  227 (410)
T ss_pred             eEEEEeCC-----CHHHHHHHHHhcc--CCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCC
Confidence            56666543     6677777776432  2348899999999999999999999999999999999999999654311100


Q ss_pred             cCcccCC-CCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHH
Q psy12303        274 RHPRLTG-IERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL  352 (480)
Q Consensus       274 ~~~~~~~-~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~  352 (480)
                      ......+ .+.+|+++.+++|+++.+.  |++. .+++..........+|.....                .......++
T Consensus       228 g~~~~~~~~~~~div~~tlsK~~g~~G--G~~~-~~~~~~~~l~~~~~~~~~s~~----------------~~~~~~~a~  288 (410)
T PRK13392        228 GIAERDGLMDRIDMIQGTLAKAFGCLG--GYIA-ASADLIDFVRSFAPGFIFTTA----------------LPPAVAAGA  288 (410)
T ss_pred             chhhhccCCCCCcEEEEEChHhhhccc--chhh-cCHHHHHHHHHhCcchhccCc----------------CCHHHHHHH
Confidence            0001111 2357888889999998743  5554 455555443322223221110                000112233


Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHH
Q psy12303        353 WLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRM  432 (480)
Q Consensus       353 ~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l  432 (480)
                      ..+|+.+  +......++..++++++.+.|++  .|+++. ++..+++.+.. +..            .  ...++.++|
T Consensus       289 ~aaL~~~--~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~-~~~~~~~~i~~-~~~------------~--~~~~~~~~L  348 (410)
T PRK13392        289 TAAIRHL--KTSQTERDAHQDRVAALKAKLNA--NGIPVM-PSPSHIVPVMV-GDP------------T--LCKAISDRL  348 (410)
T ss_pred             HHHHHHH--hcCHHHHHHHHHHHHHHHHHHHH--cCCCCC-CCCCCEEEEEe-CCH------------H--HHHHHHHHH
Confidence            3444432  22334557778889999999998  488764 45555443322 110            0  023577777


Q ss_pred             H-hcccEEEeeeee----CCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        433 M-QAGTMMVGYQPL----NDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       433 ~-~~g~~~~~~~~~----~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      . +.|+ ++.+...    .+ ..++|++ ++..+|++|+++++++|+++.++
T Consensus       349 ~~~~GI-~v~~~~~p~~~~~-~~~lRis-~~~~~t~edid~l~~aL~~~~~~  397 (410)
T PRK13392        349 MSEHGI-YIQPINYPTVPRG-TERLRIT-PTPLHDDEDIDALVAALVAIWDR  397 (410)
T ss_pred             HHhCCE-EEeeeCCCCCCCC-CceEEEE-ECCCCCHHHHHHHHHHHHHHHHH
Confidence            6 4574 4443221    12 4689999 88899999999999999988664

>PRK12414 putative aminotransferase; Provisional

Probab=99.90  E-value=2.8e-21  Score=190.79  Aligned_cols=321  Identities=9%  Similarity=0.031  Sum_probs=209.4

Q ss_pred             HHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCC---CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC
Q psy12303         91 EWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQ---GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG  167 (480)
Q Consensus        91 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~---~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g  167 (480)
                      +.+...+......|....+...+.+.+++++++++|.+   +.++++|+|+++++..++.+..+              ||
T Consensus        49 ~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~~--------------~g  114 (384)
T PRK12414         49 EGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVH--------------PG  114 (384)
T ss_pred             HHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhcC--------------CC
Confidence            44443332222446555667888899999999999974   25799999999999888877643              55


Q ss_pred             ceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc---Ch
Q psy12303        168 QLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD---PI  243 (480)
Q Consensus       168 ~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~---~l  243 (480)
                      + .|+++.++|..+...++..|.   +++.+|.++ ++.+|+++|++++++.      +++|++++++||||.+.   ++
T Consensus       115 d-~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~NPTG~~~s~~~~  184 (384)
T PRK12414        115 D-EVIYFEPSFDSYAPIVRLQGA---TPVAIKLSPEDFRVNWDEVAAAITPR------TRMIIVNTPHNPSATVFSAADL  184 (384)
T ss_pred             C-EEEEeCCCccchHHHHHHcCC---EEEEEecCccccccCHHHHHhhcCcc------cEEEEEcCCCCCCCcCCCHHHH
Confidence            6 788889999998888888887   788899874 5789999999988654      88999999999999984   58


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccccC-cccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcc
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRH-PRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAE  321 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~  321 (480)
                      ++|.++|++||+++++|++|....+....... ..+....+--+++.|++|.++ .+..+|+++..+ .......... .
T Consensus       185 ~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~-~l~~~l~~~~-~  262 (384)
T PRK12414        185 ARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPA-ELMDEIRKVH-Q  262 (384)
T ss_pred             HHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCH-HHHHHHHHHH-h
Confidence            88999999999999999999875442111100 011111123467789999997 447789988654 4433322111 0


Q ss_pred             cccccccccCcccCCCCccccCCCCCCchHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEE
Q psy12303        322 YLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG-DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNV  400 (480)
Q Consensus       322 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v  400 (480)
                      +.                    ......+...++...+. ...+.+..+...+.++.+.+.|++ . |+.+. +|..+.+
T Consensus       263 ~~--------------------~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~-~-g~~~~-~~~gg~~  319 (384)
T PRK12414        263 FM--------------------VFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAG-S-RFELL-PSEGSFF  319 (384)
T ss_pred             he--------------------ecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHh-C-CCeec-CCCcceE
Confidence            00                    00012223333333331 123345566777888899999998 4 77764 5666666


Q ss_pred             EEEeecCccCCCchhhHHHHhhhhhHHHH-HHHHhcccEEEeeeeeC--Cc-ccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        401 SFWYLPTRVRNMPHEKRLNILGEITPILK-GRMMQAGTMMVGYQPLN--DL-PNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       401 ~f~~~~~~~~~~~~~~~~~~l~~~~~~i~-~~l~~~g~~~~~~~~~~--~~-~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                      .|.-.+..... .           ..++. ..+.+.|+.++....+.  +. .+++|+++.   .+++++++.+++|.+
T Consensus       320 ~~~~~~~~~~~-~-----------~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~---~~~~~~~~~~~rl~~  383 (384)
T PRK12414        320 MLARFRHFSDE-S-----------DSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFS---KDDATLVEGARRLCS  383 (384)
T ss_pred             EEEcccccCCC-C-----------HHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEec---CCHHHHHHHHHHHhh
Confidence            55322211000 0           12233 44556776555433231  21 469999954   258999999988875

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=2e-22  Score=196.30  Aligned_cols=286  Identities=11%  Similarity=0.074  Sum_probs=197.6

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++++++.+|++++++++|+|+++++..++.+...              ||+..|+++.++|+.+...++..|+   +
T Consensus        60 ~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~--------------~g~~~vli~~P~y~~y~~~~~~~G~---~  122 (351)
T PRK01688         60 KAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCE--------------PGKDAILYCPPTYGMYSVSAETIGV---E  122 (351)
T ss_pred             HHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcC--------------CCCCEEEEcCCCHHHHHHHHHHcCC---E
Confidence            4678889999999989999999999999988877643              4423788999999999999999998   8


Q ss_pred             eEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHc--CcEEEeecccccccccccc
Q psy12303        195 CVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY--NMWLHVDAAWGGGLLLSKK  272 (480)
Q Consensus       195 v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~--~~~l~vD~a~~~~~~~~~~  272 (480)
                      ++.+|.++++.+|++++++++ +.      +++|++++|+||||.+.+.+++.++++..  +.++++|++|..+......
T Consensus       123 ~~~v~~~~~~~~d~~~l~~~~-~~------~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~  195 (351)
T PRK01688        123 IRTVPTLDNWQLDLPAIADNL-DG------VKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASL  195 (351)
T ss_pred             EEEeecCCCCCCCHHHHHHhc-cC------CcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCCh
Confidence            889999888999999998877 23      78999999999999999888877777542  6899999999776421110


Q ss_pred             ccCcccCCCCCCccceeCccccCCC-cccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchH
Q psy12303        273 YRHPRLTGIERADSVTWNPHKLMGT-LLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFK  351 (480)
Q Consensus       273 ~~~~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~  351 (480)
                      ..  .+... .--++.-|++|+++. +..+|+++. +++.+........+|-                       ...+.
T Consensus       196 ~~--~~~~~-~n~iv~rSfSK~~glaGlRiGy~i~-~~~~i~~l~~~~~~~~-----------------------v~~~~  248 (351)
T PRK01688        196 AG--WLAEY-PHLVILRTLSKAFALAGLRCGFTLA-NEEVINLLLKVIAPYP-----------------------LSTPV  248 (351)
T ss_pred             HH--HHhhC-CCEEEEecchHhhcCHHHHHhHHhC-CHHHHHHHHhccCCCC-----------------------CCHHH
Confidence            00  11111 112556699999874 366788885 4555544432222221                       11112


Q ss_pred             HHHHHHHh---cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHH
Q psy12303        352 LWLQWRAK---GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPIL  428 (480)
Q Consensus       352 ~~~~l~~~---g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i  428 (480)
                      ..++...+   +.+.+++.++...+.++++.+.|++ +++++.+.++..+.+.+.+ + .                ..++
T Consensus       249 ~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~ps~~nfi~~~~-~-~----------------~~~l  309 (351)
T PRK01688        249 ADIAAQALSPQGIAAMRERVAEINANRQWLIAALKE-IPCVEQVFDSETNYILARF-T-A----------------SSAV  309 (351)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCeECCCCCcEEEEEc-C-C----------------HHHH
Confidence            22222222   2355677777778888999999998 7787544455444333322 1 1                1356


Q ss_pred             HHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        429 KGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       429 ~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                      .+.|.++|+.+.......+..+++|+++.    +++++++++++|+
T Consensus       310 ~~~L~~~gi~vr~~~~~~~~~~~iRis~~----~~~e~~~l~~al~  351 (351)
T PRK01688        310 FKSLWDQGIILRDQNKQPGLSNCLRITIG----TREECQRVIDALR  351 (351)
T ss_pred             HHHHHHCCeEEEECCCcCCCCCeEEEeCC----CHHHHHHHHHhhC
Confidence            78888888665544333333579999943    6899999999873

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.90  E-value=4.2e-21  Score=178.12  Aligned_cols=389  Identities=17%  Similarity=0.167  Sum_probs=251.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHhhccCCccCCCCCccccccCCCChHHhHHHHHH---HHcCcCCcch-hcChhhHHHHHHHH
Q psy12303         43 DLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLI---ATANTNMFTY-EIAPVFILMETVVL  118 (480)
Q Consensus        43 ~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~-~~~~~~~~~e~~~~  118 (480)
                      +..+|....+.-++++.+.++-+.+....+. ++-..++.......+.+...   .+.+..++.. +...+..++-.++.
T Consensus        37 r~~~~~Pe~SE~e~~Rh~~rLs~kn~avd~~-m~PLGSCTMK~Np~~e~~~~~~p~f~~iHP~~pe~~vqG~l~li~~Lq  115 (496)
T COG1003          37 RRYPPLPEHSETEMVRHYTRLSQKDLAVDRG-MIPLGSCTMKLNPKAEMKPATWPEFANIHPFQPEEQVQGYLELIYELQ  115 (496)
T ss_pred             hcCCCCccccHHHHHHHHHHHHhcccccccC-ccCCcccccccCchhhcccccccchhhcCCCCChHHHHHHHHHHHHHH
Confidence            3444554457778888887766554433222 22222333333333332222   2344444444 34577788899999


Q ss_pred             HHHHHHhCCCCCCeEEC-CChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEE
Q psy12303        119 EKMRQIIGWQGGDSILA-PGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVE  197 (480)
Q Consensus       119 ~~la~~~g~~~~~~~~t-~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~  197 (480)
                      +||+++.|++.  +.+. +.|+.+=+.+|++.|..    ...+|...   +.+|++++.+|...-..+.+.|.   +|+.
T Consensus       116 ~~L~~ITG~Da--vsLQP~AGAqGE~aGll~Ir~Y----He~rG~~~---R~~~LIP~SAHGTNPASAam~G~---~VV~  183 (496)
T COG1003         116 EWLKEITGMDA--VSLQPNAGAQGEYAGLLAIRAY----HESRGEGH---RNICLIPDSAHGTNPASAAMAGF---KVVV  183 (496)
T ss_pred             HHHHHhcCCce--eeccCCCCcchhhHHHHHHHHH----HHHcCCCc---CcEEEeeccccCCChhhHhhcCc---eEEE
Confidence            99999999987  5544 45667777777777764    23344422   44999999999999999999999   8999


Q ss_pred             eeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccc-cChHHHHHHHHHcCcEEEeecccccccc-ccccccC
Q psy12303        198 VPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAF-DPIEEIADICQKYNMWLHVDAAWGGGLL-LSKKYRH  275 (480)
Q Consensus       198 v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~-~~l~~I~~i~~~~~~~l~vD~a~~~~~~-~~~~~~~  275 (480)
                      |+++++|.+|+++|++++.++      ++++.+|+|+| .|.+ .++.+|++|.+++|..+..|||.--..+ .....+.
T Consensus       184 V~~~~~G~VDlddLk~k~~~~------~AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~  256 (496)
T COG1003         184 VKCDENGNVDLDDLRAKAEDN------LAALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDM  256 (496)
T ss_pred             EecCCCCCccHHHHHHHhccc------eeEEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecCcchhhhhcccccccc
Confidence            999999999999999999976      99999999955 7988 5799999999999999999998765544 1112233


Q ss_pred             cccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccc-----ccccCcccCCCCccccCCCC----
Q psy12303        276 PRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQ-----DKLYDVRYDTGDKVIQCGRH----  346 (480)
Q Consensus       276 ~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~r~----  346 (480)
                             ++|++-+++||+++.|.|.|.--+..-.....    ..+|+...     ...+....+.. +++.-+..    
T Consensus       257 -------G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~----L~pfLP~p~~~~~~~~y~~~~~~~-~s~g~~~a~~Gs  324 (496)
T COG1003         257 -------GFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAH----LAPFLPGPVVYHDVGEYRLDYDGK-KSIGVSAAPYGS  324 (496)
T ss_pred             -------ccceEEeecccccccCCCCCCCCCCceehHhh----ccccCCCCcccCCCccccccCCCC-ccceeeccccCc
Confidence                   89999999999998886544322222111111    12333221     11111111111 11111111    


Q ss_pred             -CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc---eeEEEEEeecCccCCCchhhHHHHhh
Q psy12303        347 -NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE---MVNVSFWYLPTRVRNMPHEKRLNILG  422 (480)
Q Consensus       347 -~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~l~  422 (480)
                       .-....|+.++.+|.+|+++.-+...-+++|+...|+.   .+++.-.+.   ...+++...|-.          +...
T Consensus       325 ~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~---~y~~~y~~~~~~~HE~ild~r~l~----------~~~G  391 (496)
T COG1003         325 ASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKG---YYPVPYTGENRVAHECILDARPLK----------KETG  391 (496)
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh---cCccccCCCCcceeEEEeechHhH----------hhcC
Confidence             13357899999999999999999999999999999987   344432232   223333221110          1111


Q ss_pred             hhhHHHHHHHHhcccEEEeeeeeCC--cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        423 EITPILKGRMMQAGTMMVGYQPLND--LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       423 ~~~~~i~~~l~~~g~~~~~~~~~~~--~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      --..++.++|++-|.-  .++...-  ..+.+-+- +...-+++++|++++++.++.++
T Consensus       392 v~~~DvAKrLlD~GfH--aPT~~FPliV~~tLMIE-PTEsEsk~eLDrf~dami~I~~E  447 (496)
T COG1003         392 VRALDVAKRLLDYGFH--APTMYFPLIVAGTLMIE-PTESESKEELDRFIDAMIAIREE  447 (496)
T ss_pred             CcHHHHHHHHHhcCCC--CCcccCccccccceeec-CCCCCCHHHHHHHHHHHHHHHHH
Confidence            1135788999999842  2221111  13456666 77778999999999999988764

>KOG0259|consensus

Probab=99.90  E-value=6.9e-21  Score=173.60  Aligned_cols=351  Identities=13%  Similarity=0.069  Sum_probs=230.7

Q ss_pred             CCCCccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHH
Q psy12303         71 GHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLA  148 (480)
Q Consensus        71 ~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~  148 (480)
                      ++|.-+..+.+......   ....+........|..+.+...-.+++++++-+-+..  .++++++|+|.++|+.+++.+
T Consensus        69 GDPsv~~~~~ts~~a~~---Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~  145 (447)
T KOG0259|consen   69 GDPSVYPCFRTSQEAEQ---AVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISS  145 (447)
T ss_pred             CCCCccccccCCHHHHH---HHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHH
Confidence            34555544444432222   2233333344456666666555555544443332322  347899999999999999998


Q ss_pred             HHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeC--CCCCCCCHHHHHHHHHHHHHCCCccE
Q psy12303        149 ARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPS--DKRGRLIPSELERLVLERKAKGDIPF  226 (480)
Q Consensus       149 ~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~~~~~~  226 (480)
                      +.+              ||. .|+++.+.++-+..-+...|+   +|++...  +.++++|++.+|+.++++      |+
T Consensus       146 LA~--------------p~a-NILlPrPGfp~Y~~~a~~~~l---EVR~ydlLPe~~weIDL~~veal~DEN------T~  201 (447)
T KOG0259|consen  146 LAN--------------PGA-NILLPRPGFPLYDTRAIYSGL---EVRYYDLLPEKDWEIDLDGVEALADEN------TV  201 (447)
T ss_pred             hcC--------------CCC-ceecCCCCCchHHHhhhhcCc---eeEeecccCcccceechHHHHHhhccC------ee
Confidence            865              544 899999999988888899999   7777665  457999999999999998      99


Q ss_pred             EEEeccCCCcccccc---ChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccce-eCccccCCCc-ccc
Q psy12303        227 FVNCTSGTTVLGAFD---PIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVT-WNPHKLMGTL-LQC  301 (480)
Q Consensus       227 ~v~~~~~~~~~G~~~---~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~-~s~hK~~~~p-~~~  301 (480)
                      ++++.+|+||+|.+.   .|++|+++|+++|+.++.|++|+-..+....+-. .-.-.+.+-+++ .+..|-..+| +..
T Consensus       202 AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvp-mg~fssiVPVitlggisKrW~VPGWRl  280 (447)
T KOG0259|consen  202 AIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVP-MGKFSSIVPVITLGGISKRWIVPGWRL  280 (447)
T ss_pred             EEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccc-hhhccccCceEeecccccccccCCcee
Confidence            999999999999984   4999999999999999999999987663322111 111011233333 3556766666 789


Q ss_pred             eEEEEeCchh-hHhhhc--CCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q psy12303        302 STIHFKQDGL-LISCNQ--MSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYM  378 (480)
Q Consensus       302 g~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l  378 (480)
                      ||+.+.|..- +.....  ....++.-       ..++  -++    --.|+  =..|..-.++.+...+.-...+++..
T Consensus       281 GWi~~hD~~gvf~~~~~~q~~~~~~~~-------~~~p--~Ti----iQ~Al--P~IL~kTp~efF~k~~~~lk~na~l~  345 (447)
T KOG0259|consen  281 GWIALHDPRGVFRDTKVVQGIKNFLDI-------IPGP--ATI----IQGAL--PDILEKTPEEFFDKKLSFLKSNADLC  345 (447)
T ss_pred             eeEEEecccccccchHHHHHHHHHHhc-------cCCc--cHh----HHHHh--HHHHHhChHHHHHHHHHHHHhhHHHH
Confidence            9999988731 111000  00000000       0000  000    00111  12233335677888888899999999


Q ss_pred             HHHHhcCCCCeEEecCCceeEEEEEeecCc-cCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecc
Q psy12303        379 VKKIKSMPDKFYLILEPEMVNVSFWYLPTR-VRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIIS  457 (480)
Q Consensus       379 ~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~-~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~  457 (480)
                      .+.|++ +|++.....|.+.++.+.-..-. +.+.     .+     ..++.++|.++.++++-++...+.++|+|+++ 
T Consensus       346 y~~Lk~-IP~l~cp~kPeg~mylmv~l~~s~~~~~-----~d-----D~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i-  413 (447)
T KOG0259|consen  346 YSRLKD-IPCLTCPVKPEGCMYLMVKLNLSLFPDI-----ED-----DVDFCQKLAREESVICLPGQAFGLKNWLRIVI-  413 (447)
T ss_pred             HHHHhc-CCCcccCcCCCcceEEEeccchhhhccc-----cc-----cHHHHHHHhhhcceEEeccccccCCCeEEEEE-
Confidence            999999 99999777899888876433211 1111     11     12466777777777776666666689999993 


Q ss_pred             cCCCCHHHHHHHHHHHHHhhc
Q psy12303        458 SAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       458 ~~~~t~~di~~~~~~l~~~~~  478 (480)
                        ....+.+++.+++|++...
T Consensus       414 --~~~~~~leea~~Rik~Fc~  432 (447)
T KOG0259|consen  414 --TVEEEMLEEAFSRIKEFCD  432 (447)
T ss_pred             --ccChHHHHHHHHHHHHHHH
Confidence              4578999999999998764

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.90  E-value=1.4e-20  Score=187.00  Aligned_cols=330  Identities=15%  Similarity=0.080  Sum_probs=207.1

Q ss_pred             HHHHHHHHcCcC-CcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCcc
Q psy12303         89 AGEWLIATANTN-MFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAI  165 (480)
Q Consensus        89 ~~~~l~~~~~~~-~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~  165 (480)
                      +.+.+...+... ...|....+...+.+.+.+++....|.  ++.++++|+|+|+|+..++.+...              
T Consensus        53 ~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~~--------------  118 (403)
T TIGR01265        53 AEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALAN--------------  118 (403)
T ss_pred             HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhCC--------------
Confidence            334444443322 223444444445555555555443333  457899999999999999988753              


Q ss_pred             CCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC-
Q psy12303        166 KGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP-  242 (480)
Q Consensus       166 ~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~-  242 (480)
                      +|+ .|+++.++|+.+...+...|+   +++.++.+.  ++.+|++++++++.++      +++|++++++||+|.+.+ 
T Consensus       119 ~gd-~Vlv~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~  188 (403)
T TIGR01265       119 PGA-NILVPRPGFPLYDTRAAFSGL---EVRLYDLLPEKDWEIDLDGLEALADEK------TVAIVVINPSNPCGSVFSR  188 (403)
T ss_pred             CCC-EEEEeCCCchhHHHHHHHcCC---EEEEecCCcccCCccCHHHHHHHhCcC------ccEEEEecCCCCCCCCCCH
Confidence            445 788888999988888888887   777777743  5789999999988654      789999999999999965 


Q ss_pred             --hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCC-CC-ccceeCccccCCCc-ccceEEEEeCc-h-----h
Q psy12303        243 --IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIE-RA-DSVTWNPHKLMGTL-LQCSTIHFKQD-G-----L  311 (480)
Q Consensus       243 --l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~-~~-D~~~~s~hK~~~~p-~~~g~~~~~~~-~-----~  311 (480)
                        +++|.++|+++|+++++|++|+......+...  .+..+. .. -+++.|++|.++.| ..+|++++.++ .     .
T Consensus       189 ~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~--~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~  266 (403)
T TIGR01265       189 DHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFI--PMASFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTV  266 (403)
T ss_pred             HHHHHHHHHHHHCCCEEEEEccccccccCCCCcc--chhhhccCCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHH
Confidence              89999999999999999999987654221110  111111 11 24566999986544 78999987643 2     1


Q ss_pred             hHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Q psy12303        312 LISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYL  391 (480)
Q Consensus       312 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~  391 (480)
                      +........... .                  ...+....+...+.......+++..++..+.++++.+.|++ .+++.+
T Consensus       267 ~~~~~~~~~~~~-~------------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~  326 (403)
T TIGR01265       267 LQGLKNLLQRIL-G------------------PATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKD-IPGLVC  326 (403)
T ss_pred             HHHHHHHhhhhc-C------------------CChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc-CCCcee
Confidence            111111000000 0                  00011112222232222455677788888889999999998 778875


Q ss_pred             ecCCceeEEEEEeecCcc-CCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHH
Q psy12303        392 ILEPEMVNVSFWYLPTRV-RNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFL  469 (480)
Q Consensus       392 ~~~~~~~~v~f~~~~~~~-~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~  469 (480)
                      . .|..+.+++...+... .+.        .+  ..++...+. +.|+.+. ++...+..+++|+++.   ..++.+++.
T Consensus       327 ~-~p~~g~f~~~~~~~~~~~~~--------~~--~~~~~~~l~~~~gv~v~-pg~~f~~~~~iRis~~---~~~~~l~~~  391 (403)
T TIGR01265       327 P-KPEGAMYLMVKLELELFPEI--------KD--DVDFCEKLVREESVICL-PGSAFGLPNWVRITIT---VPESMLEEA  391 (403)
T ss_pred             c-CCCceeEEEEeccccccCCC--------CC--HHHHHHHHHHhCCEEEe-CccccCCCCeEEEEec---CCHHHHHHH
Confidence            3 4666666554333211 000        00  234556654 5665444 3333333689999954   257889999


Q ss_pred             HHHHHHhhcc
Q psy12303        470 LTEMDRLGHD  479 (480)
Q Consensus       470 ~~~l~~~~~~  479 (480)
                      +++|.+++++
T Consensus       392 l~~l~~~~~~  401 (403)
T TIGR01265       392 CSRIKEFCER  401 (403)
T ss_pred             HHHHHHHHHh
Confidence            9999887754

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.90  E-value=9.8e-21  Score=187.66  Aligned_cols=328  Identities=9%  Similarity=0.034  Sum_probs=208.1

Q ss_pred             hHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCC-CeEECCChhHHHHHHHHHHHHhcCchhHhcC
Q psy12303         85 VVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGG-DSILAPGGSISNLYAFLAARHKMFPTYKEKG  161 (480)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g  161 (480)
                      +..+.........+.....|....+..++.+++++|+.+.+|.  ++. .+++|+|+++|+..++.+..+          
T Consensus        50 p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~----------  119 (394)
T PRK05942         50 PQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVN----------  119 (394)
T ss_pred             CHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCC----------
Confidence            3334434444333332345655556678888999999888775  454 488899999999988877643          


Q ss_pred             CCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccc
Q psy12303        162 LSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGA  239 (480)
Q Consensus       162 ~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~  239 (480)
                          ||+ .|+++.++|+.+...+...|.   +++.+|.+.  ++.+|++++++.+.+.      +++|++++|+||||.
T Consensus       120 ----~gd-~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~P~NPtG~  185 (394)
T PRK05942        120 ----PGD-VVLVPSPAYPAHFRGPLIAGA---QIYPIILKPENDWLIDLSSIPEEVAQQ------AKILYFNYPSNPTTA  185 (394)
T ss_pred             ----CCC-EEEEcCCCCcchHHHHHHcCC---EEEEeecCCccCCccCHHHHHHhcccc------ceEEEEcCCCCCCCC
Confidence                556 888999999998888888887   888898874  3579999999988654      899999999999999


Q ss_pred             ccC---hHHHHHHHHHcCcEEEeeccccccccccccccC-cccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHh
Q psy12303        240 FDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH-PRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLIS  314 (480)
Q Consensus       240 ~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~  314 (480)
                      +.+   +++|.++|+++|+++++|++|+.+......... ..+.+.....+.+.|+.|.++ .+..+|+++. ++.....
T Consensus       186 ~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~-~~~l~~~  264 (394)
T PRK05942        186 TAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVG-NRHIIQG  264 (394)
T ss_pred             cCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeec-CHHHHHH
Confidence            987   788999999999999999999876542111000 011111233456678899886 4467899985 4455444


Q ss_pred             hhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC
Q psy12303        315 CNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE  394 (480)
Q Consensus       315 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~  394 (480)
                      .........            .+..+      .....+...++ ...+.+++..++..++.+++.+.|.+ . ++.+. +
T Consensus       265 l~~~~~~~~------------~~~~~------~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~-~  322 (394)
T PRK05942        265 LRTLKTNLD------------YGIFS------ALQKAAETALQ-LPDSYLQQVQERYRTRRDFLIQGLGE-L-GWNIP-P  322 (394)
T ss_pred             HHHHHhhcc------------cCCCH------HHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHH-C-CCeec-C
Confidence            332111000            00000      11112222222 23456677778888889999999988 4 78764 5


Q ss_pred             CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHH-HHhcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHH
Q psy12303        395 PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGR-MMQAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTE  472 (480)
Q Consensus       395 ~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~-l~~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~  472 (480)
                      |..+.+.|.-.+....              ..++..+ +.+.|+.+.....+.. ..+++|+++.   .+.+.+...++.
T Consensus       323 ~~~~~f~~~~~~~~~~--------------~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~---~~~~~l~~~l~~  385 (394)
T PRK05942        323 TKATMYLWVPCPVGMG--------------STDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLI---ADCDRLGEALDR  385 (394)
T ss_pred             CCeeeEEEEECCCCCC--------------HHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEec---CCHHHHHHHHHH
Confidence            6666555543332211              1233343 4456754443322221 1579999953   345666666666


Q ss_pred             HHHh
Q psy12303        473 MDRL  476 (480)
Q Consensus       473 l~~~  476 (480)
                      |.+.
T Consensus       386 l~~~  389 (394)
T PRK05942        386 LKQA  389 (394)
T ss_pred             HHHh
Confidence            6543

>PRK08068 transaminase; Reviewed

Probab=99.90  E-value=9.3e-21  Score=187.57  Aligned_cols=318  Identities=11%  Similarity=0.035  Sum_probs=209.7

Q ss_pred             HHHHHHHcCc-CCcchhcChhhHHHHHHHHHHHHHHhCC--CCC-CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCcc
Q psy12303         90 GEWLIATANT-NMFTYEIAPVFILMETVVLEKMRQIIGW--QGG-DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAI  165 (480)
Q Consensus        90 ~~~l~~~~~~-~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~  165 (480)
                      .+.+...++. ....|...++..++.+++++++.+.+|.  +++ ++++|+|+++++..++.+...              
T Consensus        51 ~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~--------------  116 (389)
T PRK08068         51 VEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMN--------------  116 (389)
T ss_pred             HHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCC--------------
Confidence            3444444332 2234544566778888888888777774  555 799999999999887776543              


Q ss_pred             CCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccCh
Q psy12303        166 KGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPI  243 (480)
Q Consensus       166 ~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l  243 (480)
                      ||+ .|+++.++|+.+..+++..|.   +++.+|+++  ++.+|++++++.+++.      +++|++++|+||||.+.+.
T Consensus       117 ~gd-~vlv~~P~y~~~~~~~~~~g~---~~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P~NPTG~~~s~  186 (389)
T PRK08068        117 PGD-TILVPDPGYPDYLSGVALARA---QFETMPLIAENNFLPDYTKIPEEVAEK------AKLMYLNYPNNPTGAVATK  186 (389)
T ss_pred             CCC-EEEEcCCCCcchHHHHHhcCC---EEEEeecccccCCCCCHHHHHHhcccc------ceEEEEECCCCCCCCcCCH
Confidence            445 788999999999999999998   888999875  3678999999888654      8899999999999999775


Q ss_pred             ---HHHHHHHHHcCcEEEeeccccccccccccccCcccC--CCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhc
Q psy12303        244 ---EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLT--GIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQ  317 (480)
Q Consensus       244 ---~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~--~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~  317 (480)
                         ++|.++|++|++++++|++|+........ ..+...  +.....+++.|++|.++ .+..+|+++. +++.+.....
T Consensus       187 ~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~-~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~-~~~l~~~l~~  264 (389)
T PRK08068        187 AFFEETVAFAKKHNIGVVHDFAYGAIGFDGQK-PVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVG-NESVIEAINL  264 (389)
T ss_pred             HHHHHHHHHHHHcCeEEEEehhhhhhccCCCC-CcChhhCCCccCCEEEEecchhccCCccceeEeEec-CHHHHHHHHH
Confidence               67788899999999999999765432111 010111  11123466779999996 4467899884 5555544322


Q ss_pred             CCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC
Q psy12303        318 MSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP  395 (480)
Q Consensus       318 ~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~  395 (480)
                      ....+...                     .......++...+  +.+.++..+++..+.++++.+.|++ . |+.+ .+|
T Consensus       265 ~~~~~~~~---------------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~-~-g~~~-~~~  320 (389)
T PRK08068        265 LQDHLFVS---------------------LFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACRE-I-GWEV-DAP  320 (389)
T ss_pred             HHhhccCC---------------------CChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcc-cCC
Confidence            21111100                     0111111122222  3456677888888899999999988 4 7765 466


Q ss_pred             ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeCCc--ccEEEEecccCCCCHHHHHHHHHH
Q psy12303        396 EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLNDL--PNFFRNIISSAAVTEGDIDFLLTE  472 (480)
Q Consensus       396 ~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~~~--~~~~R~~~~~~~~t~~di~~~~~~  472 (480)
                      ..+.+++...+....              ..++.+.|.+ .|+. +.++...+.  .+++|+++.   ..++.+...++.
T Consensus       321 ~g~~~~~v~~~~~~~--------------~~~~~~~l~~~~gi~-v~pg~~f~~~~~~~iRi~~~---~~~~~l~~al~~  382 (389)
T PRK08068        321 KGSFFAWMPVPKGYT--------------SEQFADLLLEKAHVA-VAPGNGFGEHGEGYVRVGLL---TDEERLREAVER  382 (389)
T ss_pred             CeeEEEEEECCCCCC--------------HHHHHHHHHHhCCEE-EecchHhCccCCCeEEEEEc---CCHHHHHHHHHH
Confidence            776665543332211              2456677775 4754 444322221  479999953   356777777777


Q ss_pred             HHH
Q psy12303        473 MDR  475 (480)
Q Consensus       473 l~~  475 (480)
                      |++
T Consensus       383 l~~  385 (389)
T PRK08068        383 IGK  385 (389)
T ss_pred             HHH
Confidence            765

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.90  E-value=1.3e-21  Score=191.46  Aligned_cols=326  Identities=14%  Similarity=0.056  Sum_probs=206.9

Q ss_pred             hcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcC--c---------------hhHhcCCCccCC
Q psy12303        105 EIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMF--P---------------TYKEKGLSAIKG  167 (480)
Q Consensus       105 ~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~--~---------------~~~~~g~~~~~g  167 (480)
                      .......++|....+.+.++||++..++. .-||+.||+.++.+......  |               +-++.......|
T Consensus        88 ~g~~~~d~ie~l~~~ra~~lf~a~~anvq-p~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~g  166 (493)
T PRK13580         88 AGCQNVDTVEWEAAEHAKELFGAEHAYVQ-PHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGN  166 (493)
T ss_pred             CCCchHHHHHHHHHHHHHHHhCCCccccc-CCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCC
Confidence            34566688999999999999999875544 44678899999988875310  0               000001101113


Q ss_pred             ceEEEecCC---CchhHHHHHHHcCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccCh
Q psy12303        168 QLVMFTSDQ---CHYSVRSCAAVCGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPI  243 (480)
Q Consensus       168 ~~~vl~~~~---~h~s~~~~~~~~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l  243 (480)
                      + .|+.-+.   .|.++.......|... .++..++++ ++.+|.+++++.+++.      +..|++++.++. |...|+
T Consensus       167 d-~i~~l~l~~GGHlthg~~~n~~~~~~-~~~~y~vd~~~g~iD~d~l~~~~~~~------~plvii~g~S~~-~~~~dl  237 (493)
T PRK13580        167 Q-RLLGMSLDSGGHLTHGFRPNISGKMF-HQRSYGVDPDTGLLDYDEIAALAREF------KPLILVAGYSAY-PRRVNF  237 (493)
T ss_pred             C-EEEeecCCCCCeeecCcccchhhhee-eeEecccCcccCccCHHHHHHHHhhc------CCEEEEeCcccc-CCCcCH
Confidence            4 4443322   3444433334444322 455566664 6899999999999886      667777888777 557799


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccc
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYL  323 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l  323 (480)
                      ++|.++|+++|++++||+||+.|.+....... ......++|++++++||++++|.| |+++++ +.+....... .+++
T Consensus       238 ~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~-~~~~~~~~D~vtgT~hKaL~GP~G-G~I~~~-~~l~~~L~~a-~P~i  313 (493)
T PRK13580        238 AKLREIADEVGAVLMVDMAHFAGLVAGKVFTG-DEDPVPHADIVTTTTHKTLRGPRG-GLVLAK-KEYADAVDKG-CPLV  313 (493)
T ss_pred             HHHHHHHHHcCCEEEEECchhhceeccccchh-hcCCCCCCcEEEeCChhhccCCCe-EEEEec-HHHHHHHhhC-CCcc
Confidence            99999999999999999999999887544321 112234799999999999987874 776665 4444443222 2444


Q ss_pred             cccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-CceeEEEE
Q psy12303        324 FMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-PEMVNVSF  402 (480)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~~~~~v~f  402 (480)
                      .+....                 ....+...++..+....+.++.++..+++++|++.|.+  .|+.++.. ....++.+
T Consensus       314 ~gg~l~-----------------p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~--~G~~vv~ggTdshIV~V  374 (493)
T PRK13580        314 LGGPLP-----------------HVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLK--RGARLVTGGTDNHLVLI  374 (493)
T ss_pred             cCCCcc-----------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh--cCCCccCCCCCCCEEEE
Confidence            332110                 11222233344332234567889999999999999998  69988632 34455555


Q ss_pred             EeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEe---eeeeCC--cccEEEEecccC----CCCHHHHHHHHHHH
Q psy12303        403 WYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVG---YQPLND--LPNFFRNIISSA----AVTEGDIDFLLTEM  473 (480)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~---~~~~~~--~~~~~R~~~~~~----~~t~~di~~~~~~l  473 (480)
                      ...+..            ..  ...+.+.|.+.|+++-.   |+...+  ....+|++ .+.    .++++||+++++.|
T Consensus       375 ~lg~~~------------~~--g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg-~~A~ttrg~teedi~~iad~l  439 (493)
T PRK13580        375 DVTSFG------------LT--GRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLG-TPALTTLGMGSDEMDEVAELI  439 (493)
T ss_pred             EeCCHH------------HH--HHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEec-cchhhhcCCCHHHHHHHHHHH
Confidence            332111            00  13456688888854321   222112  14679999 655    45799999999999


Q ss_pred             HHhhc
Q psy12303        474 DRLGH  478 (480)
Q Consensus       474 ~~~~~  478 (480)
                      .++++
T Consensus       440 ~~~l~  444 (493)
T PRK13580        440 VKVLS  444 (493)
T ss_pred             HHHHH
Confidence            87764

>PRK08363 alanine aminotransferase; Validated

Probab=99.90  E-value=4.8e-21  Score=190.24  Aligned_cols=329  Identities=12%  Similarity=0.070  Sum_probs=213.1

Q ss_pred             HHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhC--CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccC
Q psy12303         89 AGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIG--WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIK  166 (480)
Q Consensus        89 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~  166 (480)
                      +.+.+...+......|...++..++++.+.+++....|  .+++++++|+|+++|+..++.+..+              |
T Consensus        51 ~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~--------------~  116 (398)
T PRK08363         51 MKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLD--------------P  116 (398)
T ss_pred             HHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhCC--------------C
Confidence            33444444332223455566677888888888877766  4677899999999999988877743              5


Q ss_pred             CceEEEecCCCchhHHHHHHHcCCCCCCeEEe-eCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC--
Q psy12303        167 GQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEV-PSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP--  242 (480)
Q Consensus       167 g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v-~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~--  242 (480)
                      |+ .|+++.++|+.+...+...|.   .++.+ +.++ ++.+|+++|++++++.      +++|++++++||||.+.+  
T Consensus       117 gd-~Vl~~~p~y~~~~~~~~~~g~---~~v~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~  186 (398)
T PRK08363        117 GD-EILIPGPSYPPYTGLVKFYGG---VPVEYRTIEEEGWQPDIDDIRKKITEK------TKAIAVINPNNPTGALYEKK  186 (398)
T ss_pred             CC-EEEEcCCCCcchHHHHHHcCC---EEEEeccccccCCcCCHHHHHhhCCcc------eEEEEEECCCCCCCcCcCHH
Confidence            56 788999999999999998887   56666 4544 4579999999888654      789999999999999977  


Q ss_pred             -hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCC--ccceeCccccCC-CcccceEEEEe-CchhhHhhhc
Q psy12303        243 -IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERA--DSVTWNPHKLMG-TLLQCSTIHFK-QDGLLISCNQ  317 (480)
Q Consensus       243 -l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~--D~~~~s~hK~~~-~p~~~g~~~~~-~~~~~~~~~~  317 (480)
                       +++|.++|+++|+++++|++|+...+..+.  . ....+...  -+++.|++|+++ .+.++|++++. ++........
T Consensus       187 ~~~~l~~~a~~~~~~li~Deay~~~~~~~~~--~-~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~  263 (398)
T PRK08363        187 TLKEILDIAGEHDLPVISDEIYDLMTYEGKH--V-SPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVRE  263 (398)
T ss_pred             HHHHHHHHHHHcCeEEEEhhhhhhhccCCcc--c-CHHHcCcCCcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHH
Confidence             889999999999999999999875432111  1 11111111  244669999954 45789999873 3333322111


Q ss_pred             CCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC
Q psy12303        318 MSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP  395 (480)
Q Consensus       318 ~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~  395 (480)
                      ....+. ..           .+   +   ...+...++...+  ..+.+++..++..+..+++.+.|++ ++++.+ .+|
T Consensus       264 ~~~~~~-~~-----------~~---~---~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~-~~p  323 (398)
T PRK08363        264 AIDKLA-RI-----------RL---C---PNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNE-IPGIST-TKP  323 (398)
T ss_pred             HHHHHh-cc-----------cc---c---CChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhc-CCCCEe-cCC
Confidence            100000 00           00   0   1122222222222  3566777788888899999999998 788876 467


Q ss_pred             ceeEEEEEeecCccCCCchhhHHHHhhhhhHHH-HHHHHhcccEEEeeeeeCCc-ccEEEEecccCCCCHHHHHHHHHHH
Q psy12303        396 EMVNVSFWYLPTRVRNMPHEKRLNILGEITPIL-KGRMMQAGTMMVGYQPLNDL-PNFFRNIISSAAVTEGDIDFLLTEM  473 (480)
Q Consensus       396 ~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i-~~~l~~~g~~~~~~~~~~~~-~~~~R~~~~~~~~t~~di~~~~~~l  473 (480)
                      ..+.+.|...+.... .+           ..++ ...|.+.|+.+.....+... .+++|+++.   .++++++..++.|
T Consensus       324 ~g~~~~~~~l~~~~~-~~-----------~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~---~~~~~l~~~l~~l  388 (398)
T PRK08363        324 QGAFYIFPRIEEGPW-KD-----------DKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFL---PPVEILEEAMDRF  388 (398)
T ss_pred             CeEEEEEEEeccCCC-CC-----------HHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec---CCHHHHHHHHHHH
Confidence            777776643332100 00           1123 34456777554443322221 479999953   3689999999999


Q ss_pred             HHhhcc
Q psy12303        474 DRLGHD  479 (480)
Q Consensus       474 ~~~~~~  479 (480)
                      ++++++
T Consensus       389 ~~~~~~  394 (398)
T PRK08363        389 EEFMRE  394 (398)
T ss_pred             HHHHHH
Confidence            887653

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.90  E-value=2.5e-21  Score=193.51  Aligned_cols=308  Identities=15%  Similarity=0.137  Sum_probs=195.3

Q ss_pred             hhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH---
Q psy12303        108 PVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC---  184 (480)
Q Consensus       108 ~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~---  184 (480)
                      +....+|+.+++++++++|.+...+++ ++||+|+..++.+...              ||+ .|+++..+|.++...   
T Consensus        67 ~~~~~~e~~~~~~la~~~g~~~~~i~~-~sgt~al~~~l~~l~~--------------~gd-~Vl~~~~~~~~~~~~~~~  130 (416)
T PRK00011         67 EYVDVVEQLAIDRAKELFGAEYANVQP-HSGSQANAAVYFALLK--------------PGD-TILGMDLAHGGHLTHGSP  130 (416)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCceeeec-CCchHHHHHHHHHhcC--------------CCC-EEEEeccccCCccccccc
Confidence            345667777788999999998755444 4678899888776643              556 788888888764321   


Q ss_pred             HHHcCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccc
Q psy12303        185 AAVCGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       185 ~~~~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                      ....+.+. +++.++.+. ++.+|++++++++++.     +|++|+++.  +.+|...|+++|.++|+++|+++++|+||
T Consensus       131 ~~~~~~g~-~~~~~~~~~~~~~~d~~~l~~~i~~~-----~~k~v~~~~--~~~~~~~~~~~I~~la~~~~~~livD~a~  202 (416)
T PRK00011        131 VNFSGKLY-NVVSYGVDEETGLIDYDEVEKLALEH-----KPKLIIAGA--SAYSRPIDFKRFREIADEVGAYLMVDMAH  202 (416)
T ss_pred             ccccccee-eEeecCcCcccCCcCHHHHHHHHHhc-----CCCEEEECC--CcCCCccCHHHHHHHHHHcCCEEEEECcc
Confidence            11222222 677788874 5899999999999752     177887754  34677789999999999999999999999


Q ss_pred             cccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccC
Q psy12303        264 GGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQC  343 (480)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  343 (480)
                      +.+......... .+.   ++|+++.|+||++.+|. .|+++++++............+...                  
T Consensus       203 ~~g~~~~g~~~~-~~~---~~di~~~S~~K~l~g~~-gg~i~~~~~~~~~~l~~~~~~~~~~------------------  259 (416)
T PRK00011        203 IAGLVAAGVHPS-PVP---HADVVTTTTHKTLRGPR-GGLILTNDEELAKKINSAVFPGIQG------------------  259 (416)
T ss_pred             hhcccccCccCC-CCC---CCcEEEecCCcCCCCCC-ceEEEeCCHHHHHHHHHHhCccccC------------------
Confidence            866543221111 122   67999999999997654 4666665555554433221111100                  


Q ss_pred             CCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-CceeEEEEEeecCccCCCchhhHHHHh
Q psy12303        344 GRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-PEMVNVSFWYLPTRVRNMPHEKRLNIL  421 (480)
Q Consensus       344 ~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~l  421 (480)
                      +... ...++..++.....+++++++++..++++++.+.|++  .|+++... +....+.+...+....           
T Consensus       260 ~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~~~~i~~~~~~~~-----------  326 (416)
T PRK00011        260 GPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAE--RGFRVVSGGTDNHLVLVDLRSKGLT-----------  326 (416)
T ss_pred             CccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--CCCeeeecCCCCeEEEEeCcccCCC-----------
Confidence            0001 1222233333333456788899999999999999999  48887531 2223333332211110           


Q ss_pred             hhhhHHHHHHHHhcccEEEee-eee----CCcccEEEEecc---cCCCCHHHHHHHHHHHHHhhc
Q psy12303        422 GEITPILKGRMMQAGTMMVGY-QPL----NDLPNFFRNIIS---SAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       422 ~~~~~~i~~~l~~~g~~~~~~-~~~----~~~~~~~R~~~~---~~~~t~~di~~~~~~l~~~~~  478 (480)
                         ..++.+.|.+.|+.+... .+.    ......+|++..   ....|++|++++++.|+++++
T Consensus       327 ---~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~  388 (416)
T PRK00011        327 ---GKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLD  388 (416)
T ss_pred             ---HHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHh
Confidence               135667777778553211 011    001356998621   135689999999999998754

>PRK07337 aminotransferase; Validated

Probab=99.90  E-value=4.9e-21  Score=189.61  Aligned_cols=322  Identities=14%  Similarity=0.114  Sum_probs=210.1

Q ss_pred             HHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC
Q psy12303         90 GEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG  167 (480)
Q Consensus        90 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g  167 (480)
                      .+.+...+......|....+..++++.+.+++.+.+|.  +++++++|+|+++|+..++.+..+              +|
T Consensus        49 ~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--------------~g  114 (388)
T PRK07337         49 VEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVE--------------RG  114 (388)
T ss_pred             HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhcC--------------CC
Confidence            34555544433445655556778888888888887775  667899999999999888876643              44


Q ss_pred             ceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---
Q psy12303        168 QLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---  242 (480)
Q Consensus       168 ~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---  242 (480)
                      + .|+++.++|+++...+...|.   +++.+|.+.  ++.+|++++++.+++.      +++|++++++||||.+.+   
T Consensus       115 d-~Vlv~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~  184 (388)
T PRK07337        115 D-EVLMPDPSYPCNRHFVAAAEG---RPVLVPSGPAERFQLTAADVEAAWGER------TRGVLLASPSNPTGTSIAPDE  184 (388)
T ss_pred             C-EEEEeCCCchhhHHHHHHcCC---EEEEeecCCccCCcCCHHHHHhhcCcc------ceEEEEECCCCCCCcCcCHHH
Confidence            5 788999999999888888887   788899874  4689999999988764      789999999999999876   


Q ss_pred             hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccc-eeCccccCCCc-ccceEEEEeCchhhHhhhcCCc
Q psy12303        243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSV-TWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSA  320 (480)
Q Consensus       243 l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~-~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~  320 (480)
                      +++|.++|+++++++++|++|........  .. ..... ..+.+ +.|++|.++.| ..+|+++..+ ...........
T Consensus       185 ~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~-~~~~~-~~~vi~~~S~SK~~~~~G~RiG~~~~~~-~l~~~l~~~~~  259 (388)
T PRK07337        185 LRRIVEAVRARGGFTIVDEIYQGLSYDAA--PV-SALSL-GDDVITINSFSKYFNMTGWRLGWLVVPE-ALVGTFEKLAQ  259 (388)
T ss_pred             HHHHHHHHHHCCCEEEEeccccccccCCC--Cc-Chhhc-cCCEEEEEechhhcCCchhheeeeecCH-HHHHHHHHHHH
Confidence            68888999999999999999986543211  11 11111 23444 55899999644 5689988653 34333221111


Q ss_pred             ccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhc---HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCce
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG---DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEM  397 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g---~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~  397 (480)
                      .+...                     ...+...++...+.   .+.+.+..++..+.++++.+.|++ . ++.+...|..
T Consensus       260 ~~~~~---------------------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~-~-~~~~~~~p~~  316 (388)
T PRK07337        260 NLFIC---------------------ASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALES-L-GFKVPVMPDG  316 (388)
T ss_pred             HhccC---------------------CChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHh-c-CCccccCCCe
Confidence            11000                     12223333333331   244666677778888899999998 4 6654335666


Q ss_pred             eEEEEEeecCcc--CCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCC--cccEEEEecccCCCCHHHHHHHHHH
Q psy12303        398 VNVSFWYLPTRV--RNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLND--LPNFFRNIISSAAVTEGDIDFLLTE  472 (480)
Q Consensus       398 ~~v~f~~~~~~~--~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~--~~~~~R~~~~~~~~t~~di~~~~~~  472 (480)
                      +++.|...+...  ...+           ..++...+. +.|+.+.....+..  ..+++|+++..   ++++++..+++
T Consensus       317 g~f~~~~~~~~~~~~~~~-----------~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~---~~~~l~~~l~r  382 (388)
T PRK07337        317 AFYVYADCRGVAHPAAGD-----------SAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT---SMSRLEEAVAR  382 (388)
T ss_pred             eEEEEEecccccCCCCCC-----------HHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecC---CHHHHHHHHHH
Confidence            666654333210  0000           134555544 55644433222211  14799999543   58899999998


Q ss_pred             HHHhh
Q psy12303        473 MDRLG  477 (480)
Q Consensus       473 l~~~~  477 (480)
                      |.+++
T Consensus       383 l~~~l  387 (388)
T PRK07337        383 LGKLF  387 (388)
T ss_pred             HHHHh
Confidence            88754

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.90  E-value=2.3e-21  Score=192.15  Aligned_cols=297  Identities=18%  Similarity=0.203  Sum_probs=195.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      ..+..++++++++++|.+  ..+++++|++++..++.+..+              ||+ .|++++.+|+++..++...|.
T Consensus        83 ~~~~~~l~~~la~~~~~~--~~i~~~~g~~~~~~~l~~~~~--------------~gd-~V~~~~~~~~~~~~~~~~~g~  145 (385)
T PRK05958         83 SPAHEALEEELAEWFGAE--RALLFSSGYAANLAVLTALAG--------------KGD-LIVSDKLNHASLIDGARLSRA  145 (385)
T ss_pred             cHHHHHHHHHHHHHhCCC--cEEEECcHHHHHHHHHHHhCC--------------CCC-EEEEeCccCHHHHHHHHhcCC
Confidence            456677888899999854  467777888888877655432              556 788899999999999988887


Q ss_pred             CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccc
Q psy12303        191 GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLS  270 (480)
Q Consensus       191 ~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~  270 (480)
                         +++.+|..     |++++++.+++..   ..+++++++.+++++|...++++|.++|++||+++++|++|+.+.+..
T Consensus       146 ---~~~~~~~~-----d~~~l~~~i~~~~---~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~  214 (385)
T PRK05958        146 ---RVRRYPHN-----DVDALEALLAKWR---AGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGP  214 (385)
T ss_pred             ---ceEEeCCC-----CHHHHHHHHHhcc---CCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCC
Confidence               67777653     8899999887531   126778888888999999999999999999999999999997654421


Q ss_pred             ccccCcccCCC--CCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCC
Q psy12303        271 KKYRHPRLTGI--ERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHND  348 (480)
Q Consensus       271 ~~~~~~~~~~~--~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~  348 (480)
                      .....+...++  ...++++.++||+++. .| |+++ .+++...........+....                .+....
T Consensus       215 ~g~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G-g~~~-~~~~~~~~~~~~~~~~~~~~----------------~~~~~~  275 (385)
T PRK05958        215 QGRGLAAEAGLAGEPDVILVGTLGKALGS-SG-AAVL-GSETLIDYLINRARPFIFTT----------------ALPPAQ  275 (385)
T ss_pred             CCCchHHhhCCCCCCceEEEEechhhccc-CC-cEEE-cCHHHHHHHHHhCccceecC----------------CCCHHH
Confidence            10000011111  1234677899999974 33 6555 44544443221111221110                000012


Q ss_pred             chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHH
Q psy12303        349 IFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPIL  428 (480)
Q Consensus       349 ~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i  428 (480)
                      ..+++.+++.+..  ..++.++..++++++.+.|++  .+++++ ++..+++.+.+ +..            .  ...++
T Consensus       276 ~aa~~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~--~~~~~~-~~~~~~~~~~~-~~~------------~--~~~~~  335 (385)
T PRK05958        276 AAAARAALRILRR--EPERRERLAALIARLRAGLRA--LGFQLM-DSQSAIQPLIV-GDN------------E--RALAL  335 (385)
T ss_pred             HHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH--cCCCcC-CCCCCEEEEEe-CCH------------H--HHHHH
Confidence            2234444444321  146678889999999999998  467764 45666665543 211            0  02467


Q ss_pred             HHHHHhcccEEEeeeee---CCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        429 KGRMMQAGTMMVGYQPL---NDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       429 ~~~l~~~g~~~~~~~~~---~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      .+.|.+.|+.+......   .+ .+++|++ ++..++++|++++++.|+++
T Consensus       336 ~~~l~~~gI~v~~~~~~~~~~~-~~~lRis-~~~~~~~~~i~~~l~~l~~~  384 (385)
T PRK05958        336 AAALQEQGFWVGAIRPPTVPAG-TSRLRIT-LTAAHTEADIDRLLEALAEA  384 (385)
T ss_pred             HHHHHHCCceEecccCCCCCCC-CceEEEE-ecCCCCHHHHHHHHHHHHhc
Confidence            78888888555432111   12 4699999 78888999999999999875

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=4.4e-21  Score=187.70  Aligned_cols=287  Identities=15%  Similarity=0.135  Sum_probs=198.1

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++.++++++.++.++++|+|+++++..++.+..+              ||+ .|+++.++|+.+...++..|+   +
T Consensus        63 ~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~~--------------~gd-~vlv~~P~y~~~~~~~~~~g~---~  124 (353)
T PRK05387         63 DALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFFN--------------HDR-PLLFPDITYSFYPVYAGLYGI---P  124 (353)
T ss_pred             HHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcC--------------CCC-EEEEeCCCHHHHHHHHHHcCC---E
Confidence            3677888889999888999999999999999887764              556 788888999888888888888   8


Q ss_pred             eEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHc-CcEEEeeccccccccccccc
Q psy12303        195 CVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY-NMWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       195 v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~-~~~l~vD~a~~~~~~~~~~~  273 (480)
                      ++.+|.++++.+|++++++    .      +++|++++|+||||.+.+.+++.++++.+ ++++++|++|..+..  .. 
T Consensus       125 ~~~v~~~~~~~~d~~~l~~----~------~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~--~~-  191 (353)
T PRK05387        125 YEEIPLDDDFSIDVEDYLR----P------NGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGG--ES-  191 (353)
T ss_pred             EEEeecCCCCCCCHHHHHh----c------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCC--cc-
Confidence            8899998888999998863    2      46789999999999999999999999886 999999999965321  11 


Q ss_pred             cCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHH
Q psy12303        274 RHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL  352 (480)
Q Consensus       274 ~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~  352 (480)
                      ..+..... .-.+++.|++|.++.| ..+|+++. +++...........+.              .++      ...+..
T Consensus       192 ~~~~~~~~-~~~i~~~S~SK~~~~~GlR~G~~~~-~~~~~~~l~~~~~~~~--------------~~~------~~~~~q  249 (353)
T PRK05387        192 AIPLIDRY-PNLLVVQTFSKSRSLAGLRVGFAIG-HPELIEALNRVKNSFN--------------SYP------LDRLAQ  249 (353)
T ss_pred             hHHHHhhC-CCEEEEEehhHhhcchhhhceeeec-CHHHHHHHHHhhccCC--------------CCC------cCHHHH
Confidence            00011111 3357888999998744 67899885 4555444322111100              000      122233


Q ss_pred             HHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHH
Q psy12303        353 WLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGR  431 (480)
Q Consensus       353 ~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~  431 (480)
                      +++...+ ..+.+++..++..++++++.+.|++ . |+++. ++. +.++|.-.+ ...              ..++.+.
T Consensus       250 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~-~~~~~~~~~-~~~--------------~~~~~~~  310 (353)
T PRK05387        250 AGAIAAIEDEAYFEETRAKVIATRERLVEELEA-L-GFEVL-PSK-ANFVFARHP-SHD--------------AAELAAK  310 (353)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCeEC-CCc-CcEEEEECC-CCC--------------HHHHHHH
Confidence            3333333 2345677788888899999999999 5 88763 333 444432222 110              2356677


Q ss_pred             HHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        432 MMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       432 l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      |.++|+.+..+.. .+..+++|+++.    +++++++++++|+++..
T Consensus       311 l~~~gi~v~~~~~-~~~~~~iRis~~----~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        311 LRERGIIVRHFNK-PRIDQFLRITIG----TDEEMEALVDALKEILA  352 (353)
T ss_pred             HHHCCEEEEECCC-CCCCCeEEEEeC----CHHHHHHHHHHHHHHhh
Confidence            8888865433321 122579999943    67999999999998764

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.90  E-value=3e-21  Score=192.31  Aligned_cols=301  Identities=16%  Similarity=0.137  Sum_probs=194.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      .....++.+.+++++|.+  ..+++++|++||..++..++..            .+++ .|+.+...|.+....+...+.
T Consensus        90 ~~~~~~l~~~la~~~g~~--~~~~~~sG~~an~~ai~~l~~~------------~~~~-~i~~~~~~h~s~~~~~~~~~~  154 (407)
T PRK09064         90 NHYHVELERELADLHGKE--AALVFTSGYVSNDATLSTLAKL------------IPDC-VIFSDELNHASMIEGIRRSRC  154 (407)
T ss_pred             HHHHHHHHHHHHHHhCCC--cEEEECcHHHHHHHHHHHHhCC------------CCCC-EEEEeCcchHHHHHHHHHcCC
Confidence            344556677788999864  3677778889999999877542            0323 777777889998888887776


Q ss_pred             CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccc-c
Q psy12303        191 GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLL-L  269 (480)
Q Consensus       191 ~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~-~  269 (480)
                         ++..++.+     |+++|++.++...  ..++++|+++++++++|.+.|+++|.++|++||+++++|+||+.+.+ .
T Consensus       155 ---~~~~~~~~-----d~~~le~~l~~~~--~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~  224 (407)
T PRK09064        155 ---EKHIFRHN-----DVAHLEELLAAAD--PDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGP  224 (407)
T ss_pred             ---cEEEECCC-----CHHHHHHHHHhcc--CCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCC
Confidence               55555543     8889998886421  12478999999999999999999999999999999999999985432 1


Q ss_pred             cccccCcccCC-CCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCC
Q psy12303        270 SKKYRHPRLTG-IERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHND  348 (480)
Q Consensus       270 ~~~~~~~~~~~-~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~  348 (480)
                      ....-. ...+ .+.+|+++.+++|.++.+ | |+++ .+++..........+|.+..                ......
T Consensus       225 ~g~g~~-~~~~~~~~~div~~t~sKa~g~~-G-G~~~-~~~~~~~~l~~~~~~~~~t~----------------~~~~~~  284 (407)
T PRK09064        225 RGGGIA-ERDGLMDRIDIIEGTLAKAFGVM-G-GYIA-GSAALVDAVRSYAPGFIFTT----------------SLPPAI  284 (407)
T ss_pred             CCCChH-HhcCCCCCCeEEEEecchhhhcc-C-ceEe-cCHHHHHHHHHhCccccccC----------------cCCHHH
Confidence            110000 1122 235688888999999853 2 5555 44444443322222222110                000012


Q ss_pred             chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHH
Q psy12303        349 IFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPIL  428 (480)
Q Consensus       349 ~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i  428 (480)
                      +.++..+++.+..  .....++..++++++.+.|++  .|++++. +..+++.+.. +..            .  ...++
T Consensus       285 ~~aa~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~--~g~~~~~-~~~~iv~i~~-~~~------------~--~~~~l  344 (407)
T PRK09064        285 AAAALASIRHLKE--SNEERERHQERAAKLKAALDA--AGIPVMP-NESHIVPVMV-GDP------------E--KCKKA  344 (407)
T ss_pred             HHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH--cCCCCCC-CCCCEEEEEe-CCH------------H--HHHHH
Confidence            2333344444322  233467788999999999998  5787653 4444444432 110            0  02456


Q ss_pred             HHHHHhc-ccEEEeeeeeC----CcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        429 KGRMMQA-GTMMVGYQPLN----DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       429 ~~~l~~~-g~~~~~~~~~~----~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .++|.++ |+ ++.+....    + ..++|++ ++..+|++|++++++.|++++++
T Consensus       345 ~~~L~~~~gi-~v~~~~~p~~~~~-~~~lRis-~~~~~t~edi~~l~~~l~~~~~~  397 (407)
T PRK09064        345 SDMLLEEHGI-YVQPINYPTVPRG-TERLRIT-PTPFHTDEMIDHLVEALVEVWAR  397 (407)
T ss_pred             HHHHHHhCCE-EEeeECCCCCCCC-CceEEEE-eCCCCCHHHHHHHHHHHHHHHHH
Confidence            7777654 64 44332211    2 3689999 89999999999999999988754

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.90  E-value=5.6e-21  Score=195.28  Aligned_cols=331  Identities=11%  Similarity=0.053  Sum_probs=211.0

Q ss_pred             hHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHh--CCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCC
Q psy12303         85 VVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQII--GWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGL  162 (480)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~--g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~  162 (480)
                      ++.+...+..+. .. ...|....+..++.+++.+++.+..  +++++++++|+|+++++..++.+..+           
T Consensus       164 p~~~~~~~~~~~-~~-~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~~-----------  230 (517)
T PRK13355        164 PDEVVYDMAQQL-TD-TEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALLD-----------  230 (517)
T ss_pred             CHHHHHHHHHHh-hc-CCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhCC-----------
Confidence            444444443333 22 2346555566677777666665543  35678899999999999988887754           


Q ss_pred             CccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccc
Q psy12303        163 SAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAF  240 (480)
Q Consensus       163 ~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~  240 (480)
                         ||+ .|+++.++|+.+...+...|.   +++.+++++  ++.+|+++|+++++++      +++|++++|+||||.+
T Consensus       231 ---~Gd-~Vli~~P~y~~y~~~~~~~g~---~~v~~~~~~~~~~~~d~~~l~~~~~~~------~k~i~i~nP~NPTG~v  297 (517)
T PRK13355        231 ---DGD-EVLIPSPDYPLWTACVNLAGG---TAVHYRCDEQSEWYPDIDDIRSKITSR------TKAIVIINPNNPTGAL  297 (517)
T ss_pred             ---CCC-EEEEcCCCCcCHHHHHHHCCC---EEEEeecCcccCCCCCHHHHHHhcCcC------ceEEEEECCCCCCCcC
Confidence               556 888999999999999999987   778888764  4789999999988765      8999999999999999


Q ss_pred             cC---hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccc-eeCccccCCC-cccceEEEEe-CchhhHh
Q psy12303        241 DP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSV-TWNPHKLMGT-LLQCSTIHFK-QDGLLIS  314 (480)
Q Consensus       241 ~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~-~~s~hK~~~~-p~~~g~~~~~-~~~~~~~  314 (480)
                      .+   +++|+++|++|++++++|++|....+....... ...-..+.-.+ ..+++|.++. +..+|++++. +......
T Consensus       298 ~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s-~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~  376 (517)
T PRK13355        298 YPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTS-IASLAPDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKD  376 (517)
T ss_pred             cCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCccc-HHHhCCCCeEEEEecchhhccCcccceEEEEeeCchhhHHH
Confidence            77   888999999999999999999876542211111 11111111123 3578999754 4779998864 2322111


Q ss_pred             hh---cCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhc-----HHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy12303        315 CN---QMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG-----DEGFEKQIDRLMELAEYMVKKIKSMP  386 (480)
Q Consensus       315 ~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g-----~~~~~~~~~~~~~l~~~l~~~l~~~~  386 (480)
                      ..   ........                  +   ...+..+++...+.     .+.+.+ .++..+.++++.+.|++ +
T Consensus       377 ~~~~l~~~~~~~~------------------~---~~~~~q~a~~~aL~~~~~~~~~~~~-~~~~~~~r~~l~~~L~~-~  433 (517)
T PRK13355        377 YIEGLNMLANMRL------------------C---SNVPAQSIVQTALGGHQSVKDYLVP-GGRVYEQRELVYNALNA-I  433 (517)
T ss_pred             HHHHHHHHhcCcC------------------C---cChHHHHHHHHHhcCCccHHHHHHH-HHHHHHHHHHHHHHHhc-C
Confidence            00   00000000                  0   12333344444332     122222 23455667889999998 8


Q ss_pred             CCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCC-cccEEEEecccCCCCHHH
Q psy12303        387 DKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLND-LPNFFRNIISSAAVTEGD  465 (480)
Q Consensus       387 ~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~d  465 (480)
                      +|+++ .+|+.+.++|...+....+...+         ...+...|.+.|+.++....+.. ..+++|+++.   .++++
T Consensus       434 ~g~~~-~~p~g~fy~~~~l~~~~~~~~~~---------~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~---~~~~~  500 (517)
T PRK13355        434 PGISA-VKPKAAFYIFPKIDVKKFNIHDD---------EQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYL---PRLED  500 (517)
T ss_pred             CCccc-CCCCeeeEEEeecCcccCCCCCH---------HHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeC---CCHHH
Confidence            89886 47888887774333211000000         11233556677765554433321 2679999953   58899


Q ss_pred             HHHHHHHHHHhhc
Q psy12303        466 IDFLLTEMDRLGH  478 (480)
Q Consensus       466 i~~~~~~l~~~~~  478 (480)
                      ++..+++|.++++
T Consensus       501 l~~a~~rl~~~~~  513 (517)
T PRK13355        501 LEDAMDRLADFFS  513 (517)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998775

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.90  E-value=1.3e-20  Score=178.73  Aligned_cols=318  Identities=14%  Similarity=0.136  Sum_probs=218.1

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHH
Q psy12303        107 APVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAA  186 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~  186 (480)
                      +|...++|++    +++++|.+.  ++.+++||.|+.++++++--             .||| +|+++..++.+...+.-
T Consensus        33 G~~v~~FE~~----~ae~~G~k~--ava~~sgT~AL~laL~al~i-------------g~GD-eVI~ps~TfvATan~i~   92 (374)
T COG0399          33 GPFVRRFEQA----FAEYLGVKY--AVAVSSGTAALHLALLALAI-------------GPGD-EVIVPSFTFVATANAVL   92 (374)
T ss_pred             ChHHHHHHHH----HHHHhCCCe--EEEecChHHHHHHHHHhcCC-------------CCCC-EEEecCCchHHHHHHHH
Confidence            6666777765    889999987  89999999999999986531             2667 89999999999999999


Q ss_pred             HcCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccc
Q psy12303        187 VCGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGG  265 (480)
Q Consensus       187 ~~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~  265 (480)
                      +.|.   +.++|++|+ ++.||++.+|++|++.      |++|+..+-   .|...++++|.++|++||++++.|+||+.
T Consensus        93 ~~Ga---~PVFvDid~~T~nid~~~ie~aIt~~------tKAIipVhl---~G~~~dm~~i~~la~~~~l~vIEDaAqa~  160 (374)
T COG0399          93 LVGA---KPVFVDIDPDTLNIDPDLIEAAITPR------TKAIIPVHL---AGQPCDMDAIMALAKRHGLPVIEDAAQAH  160 (374)
T ss_pred             HcCC---eEEEEecCCcccCCCHHHHHHHcccC------CeEEEEehh---ccCCCCHHHHHHHHHHcCCeEEEEcchhc
Confidence            9999   889999996 4899999999999997      889887655   79999999999999999999999999999


Q ss_pred             cccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCC
Q psy12303        266 GLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGR  345 (480)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r  345 (480)
                      |...-..    ....+..+-++++.+.|.+.+. ..|.+++++.++.+.+......-.....     .+.+-  ....|.
T Consensus       161 Ga~y~gk----~vGt~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~~~lr~hG~~~~~-----~~~y~--~~~~G~  228 (374)
T COG0399         161 GATYKGK----KVGSFGDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKARSLRNHGLSRDA-----VFKYL--HEELGY  228 (374)
T ss_pred             cCeecCc----ccccccceEEEEecCCCCcccc-CceEEEeCCHHHHHHHHHHHHhCcCCCc-----cccce--eeeccc
Confidence            8764332    2222334566777778998875 6788888887766544321110000000     00011  111233


Q ss_pred             CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhh
Q psy12303        346 HNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEIT  425 (480)
Q Consensus       346 ~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~  425 (480)
                      +.+.-.+-+++.....+.+++..++.+++++++.+.|++ ++++.+...+....-.++..+..+....       .  ..
T Consensus       229 N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~-~~~~~~p~~~~~~~~~~~~~~i~~~~~~-------~--~R  298 (374)
T COG0399         229 NYRLTEIQAAIGLAQLERLDEINERRREIAQIYAEALKG-LPGITLPPEPDGAVHAWHLYTILVDEEG-------I--SR  298 (374)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCccccCCCCCceeeeeeeEEEecCCC-------C--CH
Confidence            333434444444444788899999999999999999999 8887765444443222332222221100       0  01


Q ss_pred             HHHHHHHHhcccEEEee-ee-----------------eCC----cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        426 PILKGRMMQAGTMMVGY-QP-----------------LND----LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       426 ~~i~~~l~~~g~~~~~~-~~-----------------~~~----~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ..+.+.|.+.|+....+ .+                 +..    ....+++. +++..+++|+++++++|++++..
T Consensus       299 ~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP-~~p~l~~~~~~~V~~~l~~~~~~  373 (374)
T COG0399         299 DALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLP-LHPNLSEEDVDRVIEALKEVLGS  373 (374)
T ss_pred             HHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEcc-CCCCCCHHHHHHHHHHHHHHhcc
Confidence            34566666775431110 00                 000    03567787 88999999999999999988753

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.90  E-value=3.3e-21  Score=192.26  Aligned_cols=317  Identities=15%  Similarity=0.181  Sum_probs=210.9

Q ss_pred             ChhhHHHHHHHHHHHHHHhC----CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH
Q psy12303        107 APVFILMETVVLEKMRQIIG----WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR  182 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g----~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~  182 (480)
                      ..+...+.+++++++.+.+|    ++++++++|+|+++|+..++.+..+              ||+ .|+++.+.|+.+.
T Consensus        94 ~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~--------------pGD-~Vlv~~P~Y~~f~  158 (447)
T PLN02607         94 YHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILAD--------------PGD-ALLVPTPYYPGFD  158 (447)
T ss_pred             CcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCC--------------CCC-EEEEcCCCCcchH
Confidence            34556788888888888776    4667899999999999888777654              666 8889999999888


Q ss_pred             HHHHH-cCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCcE
Q psy12303        183 SCAAV-CGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMW  256 (480)
Q Consensus       183 ~~~~~-~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~  256 (480)
                      ..+.. .|+   +++.|+.++  ++.+|++++++++++..+.|.++++|++++|+||+|.+.+   +++|.++|++||++
T Consensus       159 ~~~~~~~g~---~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~  235 (447)
T PLN02607        159 RDLRWRTGV---KIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIH  235 (447)
T ss_pred             HHHHhcCCc---EEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCE
Confidence            77764 566   788888764  4679999999999987777888999999999999999977   78888999999999


Q ss_pred             EEeeccccccccccccccC--cccCCC-----CCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCccccccccc
Q psy12303        257 LHVDAAWGGGLLLSKKYRH--PRLTGI-----ERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDK  328 (480)
Q Consensus       257 l~vD~a~~~~~~~~~~~~~--~~~~~~-----~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  328 (480)
                      +++|++|+...+..+.+..  ......     ..--.++.+++|.++ .+..+|+++..++.+....... ..+. .   
T Consensus       236 lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~-~~~~-~---  310 (447)
T PLN02607        236 LVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM-SSFT-L---  310 (447)
T ss_pred             EEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHH-hhcC-C---
Confidence            9999999876542211111  011111     011145679999997 4478999997665554332211 1110 0   


Q ss_pred             ccCcccCCCCccccCCCCCCchHHHHHHHHhc-----HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEE
Q psy12303        329 LYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG-----DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFW  403 (480)
Q Consensus       329 ~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g-----~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~  403 (480)
                                        ...+...+....+.     ...+++..++..+..+.+.+.|++  .|+++. ++..+.++|.
T Consensus       311 ------------------~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~--~gi~~~-~~~ag~fvw~  369 (447)
T PLN02607        311 ------------------VSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRR--AGIECL-KGNAGLFCWM  369 (447)
T ss_pred             ------------------CCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCcc-cCCeeEEEEE
Confidence                              01112222222221     233455566677778888899988  477754 5777777775


Q ss_pred             eecCccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeCC--cccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        404 YLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLND--LPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       404 ~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~~--~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      -.+......   ....     ..++.+++.+ .| +.+.++...+  .++|+|++|.+  .++++++..+++|.+.++
T Consensus       370 ~L~~~~~~~---~~~~-----e~~l~~~ll~~~g-V~v~pG~~f~~~~~g~fRi~fa~--~~~~~l~~gl~Ri~~~l~  436 (447)
T PLN02607        370 NLSPLLETP---TREG-----ELALWDSILREVK-LNISPGSSCHCSEPGWFRVCFAN--MSEDTLEVALKRIHRFMD  436 (447)
T ss_pred             EchHhhcCC---Cchh-----HHHHHHHHHHhCC-EEEcCccccCCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHH
Confidence            443221100   0000     1246666665 46 4455443221  26899999543  368999999999988764

>PRK07550 hypothetical protein; Provisional

Probab=99.90  E-value=1.9e-20  Score=185.19  Aligned_cols=322  Identities=11%  Similarity=0.074  Sum_probs=210.0

Q ss_pred             HHHHHHHHc-CcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCcc
Q psy12303         89 AGEWLIATA-NTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAI  165 (480)
Q Consensus        89 ~~~~l~~~~-~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~  165 (480)
                      +.+.+.... +.....|...++..++++.+.+++.+..|.  +++++++|+|+++|+..++.+...              
T Consensus        47 ~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--------------  112 (386)
T PRK07550         47 LLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAG--------------  112 (386)
T ss_pred             HHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcC--------------
Confidence            334444432 223344555567788999999999888774  567899999999999888877643              


Q ss_pred             CCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC-
Q psy12303        166 KGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP-  242 (480)
Q Consensus       166 ~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~-  242 (480)
                      ||+ .|+++.+.|+.+...++..|.   +++.++.++  ++.+|+++|++++++.      +++|++++++||||.+.+ 
T Consensus       113 ~gd-~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~l~~~~~~~------~~~v~~~~P~NPtG~~~~~  182 (386)
T PRK07550        113 AGD-EVILPLPWYFNHKMWLDMLGI---RPVYLPCDEGPGLLPDPAAAEALITPR------TRAIALVTPNNPTGVVYPP  182 (386)
T ss_pred             CCC-EEEEcCCCCcchHHHHHhcCC---EEEEEecCCCcCCCCCHHHHHHHhccc------CcEEEEeCCCCCCCcccCH
Confidence            556 788999999888888888888   889999874  4578999999999764      788888899999999876 


Q ss_pred             --hHHHHHHHHHcCcEEEeeccccccccccccccCcccCC--CCCCccceeCccccCC-CcccceEEEEeCchhhHhhhc
Q psy12303        243 --IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTG--IERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQ  317 (480)
Q Consensus       243 --l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~  317 (480)
                        +++|.++|++||+++++|++|+.+...... ..+....  ...-.+++.|++|.++ .+.++|+++.. ...+.....
T Consensus       183 ~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~-~~~~~~~~~  260 (386)
T PRK07550        183 ELLHELYDLARRHGIALILDETYRDFDSGGGA-PHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVAS-PARIAEIEK  260 (386)
T ss_pred             HHHHHHHHHHHHcCeEEEEeccchhhccCCCC-CcchhhCCCccccEEEEecchhhccCcccceEeeecC-HHHHHHHHH
Confidence              789999999999999999999875321111 1101111  1112345779999997 44678888864 334433221


Q ss_pred             CCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC
Q psy12303        318 MSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG--DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP  395 (480)
Q Consensus       318 ~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g--~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~  395 (480)
                      ....+.                 . +   ...+..++....+.  .+..++..++..+.++.+.+.|.+ ++++.+.  +
T Consensus       261 ~~~~~~-----------------~-~---~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~--~  316 (386)
T PRK07550        261 FMDTVA-----------------I-C---APRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFAR-LPGWELL--A  316 (386)
T ss_pred             HHhhcc-----------------c-C---CCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHh-CCCceeC--C
Confidence            111000                 0 0   11222222222221  344556667778888899999998 6677653  4


Q ss_pred             ceeEEEEEeecC-ccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHH
Q psy12303        396 EMVNVSFWYLPT-RVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTE  472 (480)
Q Consensus       396 ~~~~v~f~~~~~-~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~  472 (480)
                      ..+.++|...+. ...              ..++.++|. +.|+.+.....+.. ..+++|+++..  .++++++.+++.
T Consensus       317 ~g~~~~~~~~~~~~~~--------------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~--~~~~~~~~~~~~  380 (386)
T PRK07550        317 SGAYFAYVRHPFPDRP--------------SREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFAN--ADVAGIGELVER  380 (386)
T ss_pred             CceEEEEecCCCCCCC--------------HHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeec--CCHHHHHHHHHH
Confidence            455555533332 111              245667665 45644433222211 14699999532  468999999999


Q ss_pred             HHHh
Q psy12303        473 MDRL  476 (480)
Q Consensus       473 l~~~  476 (480)
                      |.++
T Consensus       381 l~~~  384 (386)
T PRK07550        381 LRAF  384 (386)
T ss_pred             HHhh
Confidence            9875

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=5.4e-21  Score=188.10  Aligned_cols=288  Identities=15%  Similarity=0.100  Sum_probs=199.4

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++++++++|++++++++|+|+++++..++.+..+              ||+ .|+++.++|+.+...++..|.   +
T Consensus        89 ~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~~~--------------~gd-~Vlv~~P~y~~y~~~~~~~g~---~  150 (380)
T PLN03026         89 RRLRAALAEDSGLESENILVGCGADELIDLLMRCVLD--------------PGD-KIIDCPPTFGMYVFDAAVNGA---E  150 (380)
T ss_pred             HHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHhcC--------------CCC-EEEEcCCChHHHHHHHHHcCC---E
Confidence            3577889999999888999999999999888876643              555 788888898888888888887   8


Q ss_pred             eEEeeCCCCCCCCHHHHHHHHH-HHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccc
Q psy12303        195 CVEVPSDKRGRLIPSELERLVL-ERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       195 v~~v~~~~~~~~d~~~L~~~i~-~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~  273 (480)
                      ++.+|.++++.+|+++|+++++ +.      +++|++++|+||||.+.+.+++.++++.. +++++|++|..+.......
T Consensus       151 ~~~v~~~~~~~~d~~~l~~~~~~~~------~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~  223 (380)
T PLN03026        151 VIKVPRTPDFSLDVPRIVEAVETHK------PKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQESRM  223 (380)
T ss_pred             EEEeecCCCCCcCHHHHHHHHhccC------CcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCCcchH
Confidence            8889988788999999999883 33      88999999999999999999999999865 9999999997654311100


Q ss_pred             cCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHH
Q psy12303        274 RHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL  352 (480)
Q Consensus       274 ~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~  352 (480)
                       . .+... .-.+++.|++|.++ .+..+|+++. +++.+........+|-                       ...+..
T Consensus       224 -~-~~~~~-~~viv~~SfSK~~glaGlRiGy~~~-~~~~i~~l~~~~~~~~-----------------------~~~~~q  276 (380)
T PLN03026        224 -K-WVKKY-DNLIVLRTFSKRAGLAGLRVGYGAF-PLSIIEYLWRAKQPYN-----------------------VSVAAE  276 (380)
T ss_pred             -H-HHHhC-CCEEEEecchHhhcCccccceeeec-CHHHHHHHHHhcCCCC-----------------------CCHHHH
Confidence             0 11111 23466789999998 4467888885 4445444332222111                       122233


Q ss_pred             HHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHH
Q psy12303        353 WLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGR  431 (480)
Q Consensus       353 ~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~  431 (480)
                      .++...+ ..+.+++..++..+.++++.+.|++ ++++.+ . |..+++++...+....              ..++.+.
T Consensus       277 ~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~-~-p~~~~f~~~~~~~~~~--------------~~~~~~~  339 (380)
T PLN03026        277 VAACAALSNPKYLEDVKNALVEERERLFGLLKE-VPFLEP-Y-PSDANFILCRVTSGRD--------------AKKLKED  339 (380)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH-CCCCeE-C-CCCCeEEEEECCCCCC--------------HHHHHHH
Confidence            3333333 2345677778888889999999998 666665 3 4444444432322111              2356778


Q ss_pred             HHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        432 MMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       432 l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      |.+.|+.+..... .+..+++|+++.    +.+++++++++|+++
T Consensus       340 l~~~gI~v~~~~~-~~~~~~lRis~~----~~~~~~~l~~al~~~  379 (380)
T PLN03026        340 LAKMGVMVRHYNS-KELKGYIRVSVG----KPEHTDALMEALKQL  379 (380)
T ss_pred             HHHCCeEEEECCC-CCCCCEEEEecC----CHHHHHHHHHHHHHh
Confidence            8888865443322 222579999944    678999999999864

>PRK07683 aminotransferase A; Validated

Probab=99.89  E-value=1.8e-20  Score=185.26  Aligned_cols=325  Identities=13%  Similarity=0.100  Sum_probs=214.0

Q ss_pred             HHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCC-CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCcc
Q psy12303         89 AGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGG-DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAI  165 (480)
Q Consensus        89 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~  165 (480)
                      +.+.+...+......|...++..++++++.+++.+..|.  +++ ++++|+|+++|+..++.+...              
T Consensus        46 ~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--------------  111 (387)
T PRK07683         46 VKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILE--------------  111 (387)
T ss_pred             HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCC--------------
Confidence            335555555444455655566788888888888877665  555 899999999999988877643              


Q ss_pred             CCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC--
Q psy12303        166 KGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP--  242 (480)
Q Consensus       166 ~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~--  242 (480)
                      +|+ .|+++.+.++.+..++..+|+   +++.++.++ ++.+|++++++.+++.      +++|++++++||||.+.+  
T Consensus       112 ~gd-~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~i~i~~p~NPtG~~~s~~  181 (387)
T PRK07683        112 PGT-EVILPAPIYPGYEPIIRLCGA---KPVFIDTRSTGFRLTAEALENAITEK------TRCVVLPYPSNPTGVTLSKE  181 (387)
T ss_pred             CCC-EEEEcCCCccchHHHHHHcCC---EEEEeecCcccCCCCHHHHHHhcCcC------ceEEEEeCCCCCCCcCCCHH
Confidence            445 788899999889999998888   788898875 4678899999888654      789999999999999865  


Q ss_pred             -hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCc
Q psy12303        243 -IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSA  320 (480)
Q Consensus       243 -l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~  320 (480)
                       +++|.++|+++|+++++|++|..+....+........+...-.+++.+++|.++ .+..+|+++.. ..+....... .
T Consensus       182 ~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~-~~l~~~~~~~-~  259 (387)
T PRK07683        182 ELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAP-SYLAKHILKV-H  259 (387)
T ss_pred             HHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEEEcC-HHHHHHHHHH-H
Confidence             788999999999999999999976542111100011111123466789999998 44678998864 4444433211 1


Q ss_pred             ccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCcee
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMV  398 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~  398 (480)
                      .+...                 +   ...+...++...+  +...+++..++..+.++.+.+.|.+ . ++.+ .+|..+
T Consensus       260 ~~~~~-----------------~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~-~~~~~~  316 (387)
T PRK07683        260 QYNVT-----------------C---ASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLIS-M-GLDV-EKPTGA  316 (387)
T ss_pred             HhccC-----------------C---CChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH-c-CCcc-cCCCee
Confidence            11100                 0   1112222222222  4455667777788889999999988 4 7765 367777


Q ss_pred             EEEEEeecCccCCCchhhHHHHhhhhhHHHHHH-HHhcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        399 NVSFWYLPTRVRNMPHEKRLNILGEITPILKGR-MMQAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       399 ~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~-l~~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      .+.|...+..  +.+           ..++... +.+.|+.+.+...+.. ..+++|+++. .  +++++...+++|.++
T Consensus       317 ~~~~~~~~~~--~~~-----------~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~-~--~~~~~~~al~~l~~~  380 (387)
T PRK07683        317 FYLFPSIGHF--TMS-----------SFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYA-Y--SIETLKEGLDRLEAF  380 (387)
T ss_pred             EEEEEecccC--CCC-----------HHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEec-C--CHHHHHHHHHHHHHH
Confidence            6666433321  010           1233344 4456754443322221 1479999954 2  688999999999887


Q ss_pred             hc
Q psy12303        477 GH  478 (480)
Q Consensus       477 ~~  478 (480)
                      ++
T Consensus       381 l~  382 (387)
T PRK07683        381 LQ  382 (387)
T ss_pred             HH
Confidence            64

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.89  E-value=1.2e-21  Score=190.58  Aligned_cols=312  Identities=13%  Similarity=0.034  Sum_probs=201.2

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCC-CCeEEC-CChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchh-HH
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQG-GDSILA-PGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS-VR  182 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~-~~~~~t-~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s-~~  182 (480)
                      .++.+.++.+++++.+++++|+++ .+++|+ +|||.++..++......               + .++++...|.+ +.
T Consensus        35 r~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~~---------------~-~l~i~~G~~~~~~~   98 (361)
T TIGR01366        35 RQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIEK---------------K-SLHLSFGEFSSKFA   98 (361)
T ss_pred             CChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcccc---------------c-ccEEecCHHHHHHH
Confidence            356667888889999999999954 468885 66999999888665321               2 33333445543 44


Q ss_pred             HHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecc
Q psy12303        183 SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAA  262 (480)
Q Consensus       183 ~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a  262 (480)
                      ..+....... ++..++.+....++.     .+.      ..+++|++++.+|.+|.+.|+++|   ++++|++++||++
T Consensus        99 ~~a~~~~~~~-~~~~~~~~~~~~~~~-----~~~------~~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDav  163 (361)
T TIGR01366        99 KAVKLAPWLG-EPIIVTADPGSAPEP-----QAD------PGVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDAT  163 (361)
T ss_pred             HHHHhhhccC-CceEEecCCCCCCCC-----ccC------CCCCEEEEcccCCccceecccccc---cccCCCeEEEEcC
Confidence            4445432212 456666655443443     122      238999999999999999999988   5889999999999


Q ss_pred             ccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCC------cccccccccccCcccCC
Q psy12303        263 WGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMS------AEYLFMQDKLYDVRYDT  336 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~  336 (480)
                      ++.+..+.+..         .+|++++++||++++|.|.++++++++.+ .......      +.|+...... ...++.
T Consensus       164 qs~g~~~idv~---------~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~-~~~~~~~~~~~~~p~~~d~~~~~-~~~~~~  232 (361)
T TIGR01366       164 SGAGGLPVDIA---------ETDVYYFAPQKNFASDGGLWLAIMSPAAL-ERIEAIAASGRWVPEFLSLPTAV-DNSLKN  232 (361)
T ss_pred             ccccCCCCCHH---------HCCEEEEEchhhcCCCCceEEEEECHHHH-hhhhcccCCCCCCchhhhHHHHH-hccccC
Confidence            99998877652         37999999999999887877777766533 3322111      1122111000 000111


Q ss_pred             CCccccCCCCC-CchHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-C--ceeE-EEEEeecCccC
Q psy12303        337 GDKVIQCGRHN-DIFKLWLQWRAKGDE-GFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-P--EMVN-VSFWYLPTRVR  410 (480)
Q Consensus       337 ~~~~~~~~r~~-~~l~~~~~l~~~g~~-~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~--~~~~-v~f~~~~~~~~  410 (480)
                      ++.   .+-.. ..+++..+++.+..+ +++.+.++..++++++++.+.+ .++++++.. +  .+.. .++.+ +....
T Consensus       233 ~t~---~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~-~~~~~~~~~~~~~~s~~v~~v~~-~~g~~  307 (361)
T TIGR01366       233 QTY---NTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQE-RPYATPFVTDPGKRSQVVGTIDF-VDDID  307 (361)
T ss_pred             CCC---CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCChhhcccceEEEEC-CCccC
Confidence            111   11111 223556667766556 5888889999999999999999 776776532 2  1211 23433 22211


Q ss_pred             CCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        411 NMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       411 ~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                                    ..++...|.+.|+.+......-+ ...+|++ .+.++|++||++++++|++++++|
T Consensus       308 --------------~~~v~~~L~~~gI~i~~~~~~l~-~~~vRis-~~~~~t~~di~~l~~al~~~~~~~  361 (361)
T TIGR01366       308 --------------AATVAKILRANGIVDTEPYRKLG-RNQLRVA-MFPAIDPDDVEALTECVDWVVERL  361 (361)
T ss_pred             --------------HHHHHHHHHHCCCeeccCccccC-CCcEEEE-cCCCCCHHHHHHHHHHHHHHHhhC
Confidence                          24566777777755432211112 4689999 778999999999999999988765

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.89  E-value=3.4e-20  Score=184.30  Aligned_cols=338  Identities=9%  Similarity=0.101  Sum_probs=218.3

Q ss_pred             hHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCC-CeEECCChhHHHHHHHHHHHHhcCchhHhcC
Q psy12303         85 VVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGG-DSILAPGGSISNLYAFLAARHKMFPTYKEKG  161 (480)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g  161 (480)
                      +......+.....+.....|....+...+.+.+++|+.+..|.  ++. ++++|+|+++|+..++.+..+          
T Consensus        48 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~----------  117 (403)
T PRK08636         48 PQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITN----------  117 (403)
T ss_pred             CHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCC----------
Confidence            4444545444443333455655567778888999999888885  455 699999999999999887754          


Q ss_pred             CCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCC--CCCCCCHHHHHHHHHHHHHC-CCccEEEEeccCCCccc
Q psy12303        162 LSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD--KRGRLIPSELERLVLERKAK-GDIPFFVNCTSGTTVLG  238 (480)
Q Consensus       162 ~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~-~~~~~~v~~~~~~~~~G  238 (480)
                          ||+ .|++.+++|+.+...+...|.   +++.+|.+  +++.+|++.+.+.+++..++ +.++++|++++|+||||
T Consensus       118 ----~gd-~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG  189 (403)
T PRK08636        118 ----PGD-VAIVPDPAYPIHSQAFILAGG---NVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTT  189 (403)
T ss_pred             ----CCC-EEEEcCCCCcchHHHHHhcCC---EEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCC
Confidence                556 888999999999999999998   88888874  45789988776555543322 24588999999999999


Q ss_pred             cccC---hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCC---CccceeCccccCC-CcccceEEEEeCchh
Q psy12303        239 AFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIER---ADSVTWNPHKLMG-TLLQCSTIHFKQDGL  311 (480)
Q Consensus       239 ~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~---~D~~~~s~hK~~~-~p~~~g~~~~~~~~~  311 (480)
                      .+.+   +++|.++|++|++++++|++|+.......  ..+.+..++.   ..+.+.|++|.++ .+..+|+++. ++.+
T Consensus       190 ~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~-~~~l  266 (403)
T PRK08636        190 ATVEKSFYERLVALAKKERFYIISDIAYADITFDGY--KTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVG-NKKL  266 (403)
T ss_pred             ccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCC--CCCChhcCCCccccEEEEEecccccCCccceeeeeeC-CHHH
Confidence            9976   57888889999999999999987654211  1111222211   2234678999996 5578999874 4554


Q ss_pred             hHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Q psy12303        312 LISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYL  391 (480)
Q Consensus       312 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~  391 (480)
                      ........ .+..           .+     .......+.. ..+.. ..+.++++.+...+..+.+.+.|++ . ++.+
T Consensus       267 i~~~~~~~-~~~~-----------~~-----~~~~~q~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~  325 (403)
T PRK08636        267 VGALKKIK-SWLD-----------YG-----MFTPIQVAAT-IALDG-DQSCVEEIRETYRKRRDVLIESFAN-A-GWEL  325 (403)
T ss_pred             HHHHHHHH-HHhc-----------cc-----CChHHHHHHH-HHHhC-cHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcc
Confidence            44332111 1000           00     0000111111 12221 2455667777788888999999998 4 7765


Q ss_pred             ecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCCc-ccEEEEecccCCCCHHHHHHH
Q psy12303        392 ILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLNDL-PNFFRNIISSAAVTEGDIDFL  469 (480)
Q Consensus       392 ~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~~-~~~~R~~~~~~~~t~~di~~~  469 (480)
                       .+|..+.++|...+......+           ..++...+. +.|+.+.+...+... .+++|+++.   .+++++++.
T Consensus       326 -~~p~~g~~~~~~l~~~~~~~~-----------~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~---~~~~~l~~~  390 (403)
T PRK08636        326 -QKPRASMFVWAKIPEPARHLG-----------SLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI---ENENRIRQA  390 (403)
T ss_pred             -cCCCcceEEEEECCCccCCCC-----------HHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec---CCHHHHHHH
Confidence             356677766654443221111           124555544 456544433222221 479999953   478999999


Q ss_pred             HHHHHHhhcc
Q psy12303        470 LTEMDRLGHD  479 (480)
Q Consensus       470 ~~~l~~~~~~  479 (480)
                      ++.|++++++
T Consensus       391 ~~rl~~~l~~  400 (403)
T PRK08636        391 ARNIKKFLKE  400 (403)
T ss_pred             HHHHHHHHHh
Confidence            9999988754

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.89  E-value=1.2e-20  Score=187.78  Aligned_cols=299  Identities=15%  Similarity=0.157  Sum_probs=195.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG  191 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~  191 (480)
                      ....++.+.+++++|.+  ..+++++|++||..++.++...            .+|+ +|+++...|.++..++...|. 
T Consensus        90 ~~~~~le~~la~~~g~~--~~~~~~SG~~An~~ai~~l~~~------------~~g~-~I~~~~~~H~s~~~~~~~~g~-  153 (406)
T PRK13393         90 HYHVLLEAELADLHGKE--AALLFTSGYVSNWAALSTLGSR------------LPGC-VILSDELNHASMIEGIRHSRA-  153 (406)
T ss_pred             HHHHHHHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHhhcC------------CCCC-EEEEccchhHHHHHHHHHcCC-
Confidence            35566778899999974  4777778889999999865321            0334 788888999999999888775 


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccc-cc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLL-LS  270 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~-~~  270 (480)
                        +++.++.+     |++++++.++...  ...+++|+++++++++|.+.|+++|.++|+++|+++++|++|+.+.+ ..
T Consensus       154 --~~~~~~~~-----d~~~l~~~l~~~~--~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~  224 (406)
T PRK13393        154 --EKRIFRHN-----DPADLERKLSDLD--PHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPR  224 (406)
T ss_pred             --eEEEeCCC-----CHHHHHHHHHhcc--CCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCC
Confidence              56666654     7888888876431  12478999999999999999999999999999999999999985543 11


Q ss_pred             ccccCcccCCC-CCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC-CC
Q psy12303        271 KKYRHPRLTGI-ERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-ND  348 (480)
Q Consensus       271 ~~~~~~~~~~~-~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-~~  348 (480)
                      ...-. ...++ +..|+++.++.|.++.+.  |+++ .++...........+|.+.                 .+.. ..
T Consensus       225 G~g~~-~~~~~~~~~~i~~~tlsKa~g~~G--G~~~-~~~~~~~~l~~~~~~~~~t-----------------~~~~p~~  283 (406)
T PRK13393        225 GGGIA-EREGLADRLTIIEGTLAKAFGVMG--GYIT-GSAALCDFIRSFASGFIFT-----------------TSLPPAV  283 (406)
T ss_pred             CCchh-hhcCCCCCCeEEEEeCchhhcccC--ceee-CCHHHHHHHHHhCcCceec-----------------CccCHHH
Confidence            11000 11122 246888788999998632  5544 4555444332222222211                 0111 12


Q ss_pred             chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHH
Q psy12303        349 IFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPIL  428 (480)
Q Consensus       349 ~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i  428 (480)
                      ..++.++++.+...+  ...++..++++++.+.|++  .+++++ ++...++.+.. +..       .       ...++
T Consensus       284 ~aa~~aaL~~~~~~~--~~~~~~~~~~~~l~~~L~~--~g~~~~-~~~~~i~~v~~-~~~-------~-------~~~~l  343 (406)
T PRK13393        284 AAGALASVRHLKASS--AERERHQDRVARLRARLDK--AGIPHL-PNPSHIVPVMV-GDP-------V-------LCKQI  343 (406)
T ss_pred             HHHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHHHH--cCCCcC-CCCCCeEEEEe-CCH-------H-------HHHHH
Confidence            234444554432222  2235667889999999988  477765 44455544422 110       0       02457


Q ss_pred             HHHHHhc-ccEEEeeeee----CCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        429 KGRMMQA-GTMMVGYQPL----NDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       429 ~~~l~~~-g~~~~~~~~~----~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .++|.++ |+ ++.....    .+ ...+|++ ++..+|++||++++++|+++.++
T Consensus       344 ~~~L~~~~Gi-~v~~~~~p~~p~g-~~~iRis-~~~~~t~edid~l~~~l~~~~~~  396 (406)
T PRK13393        344 SDELLDRYGI-YVQPINYPTVPRG-TERLRIT-PSPLHTDADIEHLVQALSEIWAR  396 (406)
T ss_pred             HHHHHHhCCE-EEEeECCCCCCCC-CceEEEE-ECCCCCHHHHHHHHHHHHHHHHh
Confidence            7778775 74 4433221    23 3689999 99999999999999999987654

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=1.2e-20  Score=184.71  Aligned_cols=287  Identities=15%  Similarity=0.122  Sum_probs=197.5

Q ss_pred             HHHHHHHHHHhCCCC-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        115 TVVLEKMRQIIGWQG-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       115 ~~~~~~la~~~g~~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      .++++.+++++|.++ .++++|+|+++++..++.+..+              ||+ .|+++.++|+.+...++..|+   
T Consensus        66 ~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~~--------------~gd-~vlv~~P~y~~~~~~~~~~g~---  127 (356)
T PRK04870         66 AALKAALRAAMGVPAGADVLLGNGSDELIQLLALACAK--------------PGA-TVLAPEPGFVMYRMSAKLAGL---  127 (356)
T ss_pred             HHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhcC--------------CCC-EEEECCCCHHHHHHHHHHcCC---
Confidence            356777888889865 4799999999988888776643              555 788999999999999999998   


Q ss_pred             CeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccc
Q psy12303        194 NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       194 ~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~  273 (480)
                      +++.+|.++++.+|+++|++++++.     ++++|++++++||||.+.+.+++.++++..++++++|++|..+...  ..
T Consensus       128 ~~~~i~~~~~~~~d~~~l~~~~~~~-----~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~--~~  200 (356)
T PRK04870        128 EFVGVPLTADFTLDLPAMLAAIAEH-----RPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAGD--SW  200 (356)
T ss_pred             EEEEecCCCCCCCCHHHHHHHhhcC-----CCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcCc--ch
Confidence            8899999888899999999998642     2789999999999999999999998888778999999999764321  11


Q ss_pred             cCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHH
Q psy12303        274 RHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLW  353 (480)
Q Consensus       274 ~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~  353 (480)
                       .+.+... .--+++.|++|++..+..+|+++.. +..+.........|.                       ...+...
T Consensus       201 -~~~~~~~-~~vi~~~S~SK~~~~GlRiG~~i~~-~~~i~~~~~~~~~~~-----------------------~~~~~q~  254 (356)
T PRK04870        201 -LPRLARF-PNLLVMRTVSKLGLAGLRLGYLAGH-PAWIAELDKVRPPYN-----------------------VNVLTQA  254 (356)
T ss_pred             -HHHHhhC-CCEEEEecchhhhhHHHhhhhhhCC-HHHHHHHHHccCCCc-----------------------CCHHHHH
Confidence             0112221 1236677999954444678988754 445444332221110                       1112222


Q ss_pred             HHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHH
Q psy12303        354 LQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRM  432 (480)
Q Consensus       354 ~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l  432 (480)
                      ++...+ ..+.+++..++..+.++.+.+.|++ .+++.+. ++....+.+. .+ .                ..++.+.|
T Consensus       255 ~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~-~~~~~~~~~~-~~-~----------------~~~~~~~l  314 (356)
T PRK04870        255 TALFALEHVDVLDAQAAQLRAERTRLAAALAA-LPGVTVF-PSAANFILVR-VP-D----------------AAAVFDGL  314 (356)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh-CCCcEEC-CCCCeEEEEE-CC-C----------------HHHHHHHH
Confidence            222222 1344677788888999999999999 8898763 4444433332 22 1                13456777


Q ss_pred             HhcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        433 MQAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       433 ~~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      .+.|+.+.....+.. ..+++|+++.    +.+++++++++|+++
T Consensus       315 ~~~gI~v~~~~~f~~~~~~~iRis~~----~~~~~~~l~~al~~~  355 (356)
T PRK04870        315 KTRGVLVKNLSGMHPLLANCLRVTVG----TPEENAQFLAALKAA  355 (356)
T ss_pred             HHCCEEEEECCCCCCCCCCeEEEeCC----CHHHHHHHHHHHHHh
Confidence            788855444322211 2579999943    689999999999876

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.89  E-value=1.1e-20  Score=188.32  Aligned_cols=323  Identities=17%  Similarity=0.227  Sum_probs=199.2

Q ss_pred             CcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchh
Q psy12303        101 MFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS  180 (480)
Q Consensus       101 ~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s  180 (480)
                      ...|..+++..++++.    +++++|.+  .+++|+|||+|+..++.+..+              |||  |+++...+.+
T Consensus        71 ~~~Y~~~~g~~~Lrea----ia~~~~~~--~vv~t~ggt~A~~~~~~all~--------------pGD--Vii~~p~~~~  128 (460)
T PRK13238         71 DEAYAGSRSYYRLEDA----VKDIFGYP--YTIPTHQGRAAEQILFPVLIK--------------KGD--VVPSNYHFDT  128 (460)
T ss_pred             CcccCCCCCHHHHHHH----HHHHhCCC--cEEECCCHHHHHHHHHHHhCC--------------CCC--EEccCCcccc
Confidence            3457777777777666    66677765  489999999999999887754              667  6666665556


Q ss_pred             HHHHHHHcCCCCCCeEEeeCCC--------C--CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccc-ccc---ChHHH
Q psy12303        181 VRSCAAVCGLGTDNCVEVPSDK--------R--GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG-AFD---PIEEI  246 (480)
Q Consensus       181 ~~~~~~~~g~~~~~v~~v~~~~--------~--~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G-~~~---~l~~I  246 (480)
                      +...+...|.   +++.+++++        .  |.+|+++|++++++..  ..++++|++++++|++| .+.   ++++|
T Consensus       129 ~~~~i~~~G~---~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~--~~~tk~Ivl~~p~NptGG~v~s~~~l~~I  203 (460)
T PRK13238        129 TRAHIELNGA---TAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVG--AENVPFIVMTITNNSAGGQPVSMANLRAV  203 (460)
T ss_pred             hHHHHHHcCC---EEEEEeccccccccccccccCCcCHHHHHHHHhhcC--CCceeEEEEecCCCCCCCcCCCHHHHHHH
Confidence            6666777777   778888753        2  4599999999998531  12389999999999998 554   47899


Q ss_pred             HHHHHHcCcEEEeecccccc-ccccc----cccCcccC-----CCCCCccceeCccccCCCcccceEEEEeCchhhHhhh
Q psy12303        247 ADICQKYNMWLHVDAAWGGG-LLLSK----KYRHPRLT-----GIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCN  316 (480)
Q Consensus       247 ~~i~~~~~~~l~vD~a~~~~-~~~~~----~~~~~~~~-----~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~  316 (480)
                      .++|++||++++.|+|+... .++..    .+....+.     -.+.+|++++|++|.+++|.| |++++++.++...+.
T Consensus       204 ~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l~~~~~  282 (460)
T PRK13238        204 YEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLLCFRDEDLFTECR  282 (460)
T ss_pred             HHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcce-eEEEcChHHHHHHhh
Confidence            99999999999999988542 22211    01100111     113689999999999998875 777777666655443


Q ss_pred             cCCcccccccccccCcccCCCCccccCCCCCC-chHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC
Q psy12303        317 QMSAEYLFMQDKLYDVRYDTGDKVIQCGRHND-IFKLWLQWRA-KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE  394 (480)
Q Consensus       317 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~-~l~~~~~l~~-~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~  394 (480)
                      .....+  .+.           .++ ++-... ..++..+++. ...+    ..+...+.+++|.+.|.+  .|+.++ .
T Consensus       283 ~~~~~~--~g~-----------~t~-~g~~~~~~~Ala~~l~e~~~~~----~~~~~~~~~~~l~~~L~~--~G~~~~-~  341 (460)
T PRK13238        283 TLCILY--EGF-----------PTY-GGLAGRDMEALAVGLYEGMDED----YLAYRIGQVEYLGEGLEE--AGVPIQ-T  341 (460)
T ss_pred             hccccc--CCc-----------ccc-cCcHHHHHHHHHhhHHHhhChH----HHHHHHHHHHHHHHHHHH--CCCCeE-c
Confidence            221110  000           000 111111 1222223322 1222    333344467999999998  599987 4


Q ss_pred             CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeee-------CC-----cccEEEEecccCCC
Q psy12303        395 PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPL-------ND-----LPNFFRNIISSAAV  461 (480)
Q Consensus       395 ~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~-------~~-----~~~~~R~~~~~~~~  461 (480)
                      |..+.++|.-...-........    +.  ..++...|. +.|+..+..+.+       .+     ....+|++++-..-
T Consensus       342 p~Gg~~v~~d~~~~~~~~~~~~----~~--~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~  415 (460)
T PRK13238        342 PAGGHAVFVDAGKFLPHIPAEQ----FP--AQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVY  415 (460)
T ss_pred             cCCceEEEEEchhcCCCCCCCC----Cc--hHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccC
Confidence            6666665543211100000000    00  123444444 445443332211       11     13789999876677


Q ss_pred             CHHHHHHHHHHHHHhhc
Q psy12303        462 TEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       462 t~~di~~~~~~l~~~~~  478 (480)
                      |.+++++++++|+++.+
T Consensus       416 ~~~~~~~~~~~l~~~~~  432 (460)
T PRK13238        416 TQSHMDYVAEALKAVKE  432 (460)
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999998764

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.89  E-value=3e-20  Score=183.88  Aligned_cols=321  Identities=13%  Similarity=0.070  Sum_probs=207.2

Q ss_pred             HHHHHHHHcCc-CCcchhcChhhHHHHHHHHHHHHHHhCC--CCC-CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCc
Q psy12303         89 AGEWLIATANT-NMFTYEIAPVFILMETVVLEKMRQIIGW--QGG-DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSA  164 (480)
Q Consensus        89 ~~~~l~~~~~~-~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~  164 (480)
                      +.+.+...+.. ....|....+..++.+.+.+++.+.+|.  ++. .+++|+|+++++..++.+..+             
T Consensus        49 ~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~-------------  115 (385)
T PRK09276         49 IIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVN-------------  115 (385)
T ss_pred             HHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCC-------------
Confidence            33555544332 2234544445577888888888887775  444 588899999999888877654             


Q ss_pred             cCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC
Q psy12303        165 IKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP  242 (480)
Q Consensus       165 ~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~  242 (480)
                       ||+ .|+++.++|+.+...++..|.   +++.+|.+.  ++.+|++++++.+.+.      +++|++++|+||||.+.+
T Consensus       116 -~gd-~Vl~~~P~y~~~~~~~~~~g~---~~~~v~~~~~~g~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~  184 (385)
T PRK09276        116 -PGD-VVLVPDPGYPVYKIGTIFAGG---EPYFMPLKEENGFLPDLDAIPEDVAKK------AKLMFINYPNNPTGAVAD  184 (385)
T ss_pred             -CCC-EEEEcCCCCcChHHHHHHcCC---EEEEEecCCCCCCcCCHHHHHHhcccc------ceEEEEeCCCCCCCCCCC
Confidence             556 788899999999999999988   888889864  3568999998887654      889999999999999977


Q ss_pred             ---hHHHHHHHHHcCcEEEeeccccccccccccccC-cccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhc
Q psy12303        243 ---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH-PRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQ  317 (480)
Q Consensus       243 ---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~  317 (480)
                         +++|.++|++||+++++|++|+.+......... ..+.+.....+++.|++|.++.| ..+|+++. ++........
T Consensus       185 ~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~-~~~l~~~~~~  263 (385)
T PRK09276        185 LEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVG-NADLIAGLGK  263 (385)
T ss_pred             HHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeC-CHHHHHHHHH
Confidence               588888899999999999999876542111000 01111112346677999999644 56898875 4444443321


Q ss_pred             CCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC
Q psy12303        318 MSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP  395 (480)
Q Consensus       318 ~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~  395 (480)
                      ... ....                    ....+...++...+  ....+++..++..+.++++.+.|++ . ++++. +|
T Consensus       264 ~~~-~~~~--------------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~-~~  319 (385)
T PRK09276        264 VKS-NVDS--------------------GVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRK-L-GLEVE-PP  319 (385)
T ss_pred             HHh-hccC--------------------CCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh-C-CCccc-CC
Confidence            111 1000                    01111222222222  3455677777888889999999999 5 78764 56


Q ss_pred             ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeCCc-ccEEEEecccCCCCHHHHHHHHHHH
Q psy12303        396 EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLNDL-PNFFRNIISSAAVTEGDIDFLLTEM  473 (480)
Q Consensus       396 ~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~~~-~~~~R~~~~~~~~t~~di~~~~~~l  473 (480)
                      ..+.+.+...+....              ..++.+.|.+ .|+.+.....+... .+++|+++.   .+++++...++.|
T Consensus       320 ~~~~~~~v~~~~~~~--------------~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~---~~~~~l~~~l~~l  382 (385)
T PRK09276        320 KATFYVWAPVPKGYT--------------SAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT---VPDERIEEAVERI  382 (385)
T ss_pred             CcceEEEEECCCCCC--------------HHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC---CCHHHHHHHHHHH
Confidence            666544443332211              2355666654 56544332222211 469999953   3678888888877


Q ss_pred             HH
Q psy12303        474 DR  475 (480)
Q Consensus       474 ~~  475 (480)
                      .+
T Consensus       383 ~~  384 (385)
T PRK09276        383 KK  384 (385)
T ss_pred             hh
Confidence            64

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.89  E-value=5.8e-21  Score=190.69  Aligned_cols=320  Identities=16%  Similarity=0.100  Sum_probs=200.3

Q ss_pred             hhhHHHHHHHHHHHHHHhCCCCCCeEE---CCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecC---CCchhH
Q psy12303        108 PVFILMETVVLEKMRQIIGWQGGDSIL---APGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSD---QCHYSV  181 (480)
Q Consensus       108 ~~~~~~e~~~~~~la~~~g~~~~~~~~---t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~---~~h~s~  181 (480)
                      ....++|+...+..+++|+.......+   +.+|+.||+.++.++.+              ||+ .|+..+   ..|.++
T Consensus        76 ~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~--------------pgD-~Il~~d~~~gGhl~H  140 (475)
T PLN03226         76 EYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQ--------------PHD-RIMGLDLPHGGHLSH  140 (475)
T ss_pred             hhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCC--------------CCC-EEEECCCCcCcchhh
Confidence            456788888888899999987644333   47899999999988865              556 666633   334443


Q ss_pred             ---HHHHHHcCCCCCCeE--EeeCC-CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCc
Q psy12303        182 ---RSCAAVCGLGTDNCV--EVPSD-KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNM  255 (480)
Q Consensus       182 ---~~~~~~~g~~~~~v~--~v~~~-~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~  255 (480)
                         ...+...+.+. .+.  ..+++ +++.+|+++|++++++.     +|++|++.  .+.+|..-|+++|.++|+++|+
T Consensus       141 ~~~~~g~~~s~~~~-~~~~~~y~~~~~~g~iD~d~Le~~l~~~-----~pklIv~~--~S~~s~~~D~a~i~~ia~~~ga  212 (475)
T PLN03226        141 GYQTDGKKISATSI-YFESMPYRLDESTGLIDYDKLEKKAMLF-----RPKLIIAG--ASAYPRDWDYARMRKIADKVGA  212 (475)
T ss_pred             hhhhcccccccceE-EEEeeeeeecCCCCCcCHHHHHHHHhhc-----CCeEEEEe--cCcCCCccCHHHHHHHHHHcCC
Confidence               22222222210 111  23344 46899999999998753     27766553  3457888999999999999999


Q ss_pred             EEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccC
Q psy12303        256 WLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYD  335 (480)
Q Consensus       256 ~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  335 (480)
                      ++++|+||+.+.+..+.... .   ++.+|++++++|||+++|.| |++++++. ...........|.....     ..+
T Consensus       213 ~LlvD~AH~~Gli~~~~~~~-p---~~~~Div~~t~hK~L~GP~G-g~I~~~~~-~~~~~~~g~~~~~d~~~-----~i~  281 (475)
T PLN03226        213 LLMCDMAHISGLVAAQEAAS-P---FEYCDVVTTTTHKSLRGPRG-GMIFFRKG-PKPPKGQGEGAVYDYED-----KIN  281 (475)
T ss_pred             EEEEEchhhhCcccCCCCCC-C---CCCCeEEEecCcccccCCCc-eEEEEchh-hcccccCCCccHHHHHH-----Hhc
Confidence            99999999999887665333 1   23799999999999988987 77777553 22111000000000000     000


Q ss_pred             C-CCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC-ceeEEEEEeecCccCCC
Q psy12303        336 T-GDKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP-EMVNVSFWYLPTRVRNM  412 (480)
Q Consensus       336 ~-~~~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~-~~~~v~f~~~~~~~~~~  412 (480)
                      . ....++.+-.. .+.++..+++.+-..+++++.++..+++++|.+.|.+  .|++++... ...++.+.+.+..+.  
T Consensus       282 ~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~--~G~~l~~~~t~~hi~lv~~~~~gi~--  357 (475)
T PLN03226        282 FAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMS--KGYKLVTGGTDNHLVLWDLRPLGLT--  357 (475)
T ss_pred             cccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHh--CCCEEEcCCCCCCEEEEEccCCCCC--
Confidence            0 00011222111 3445556666655556778889999999999999999  799998642 234555544343322  


Q ss_pred             chhhHHHHhhhhhHHHHHHHHhcccEEEeeeee-----CCcccEEEEe---cccCCCCHHHHHHHHHHHHHhhc
Q psy12303        413 PHEKRLNILGEITPILKGRMMQAGTMMVGYQPL-----NDLPNFFRNI---ISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       413 ~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~-----~~~~~~~R~~---~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                                  ..++.+.|...|+. +.....     .-.+..+|+.   +++...+++|++++.+.|.++++
T Consensus       358 ------------~~~~~~~L~~~~I~-~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~  418 (475)
T PLN03226        358 ------------GSRVEKVLDLAHIT-LNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVT  418 (475)
T ss_pred             ------------HHHHHHHHHHCCCE-ECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence                        12344556566643 221110     0014568883   16778899999999999988765

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.89  E-value=3.8e-21  Score=171.85  Aligned_cols=315  Identities=13%  Similarity=0.135  Sum_probs=230.7

Q ss_pred             hhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchh----HHH
Q psy12303        108 PVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS----VRS  183 (480)
Q Consensus       108 ~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s----~~~  183 (480)
                      +.--.+-..+...++.++|..+++++++.+.|.-++..|.++...            .+|+.+|+....++++    .+.
T Consensus        72 ~~W~~lp~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~------------~~~r~vIv~E~~~fpTdly~a~g  139 (407)
T COG3844          72 ADWFDLPERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRP------------QEGRRVIVSEGDNFPTDLYIAEG  139 (407)
T ss_pred             CchhhchhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhcc------------CCCceEEeecCCCCCcchhhhcc
Confidence            334567778899999999999989999988887666666666543            1345355544444544    334


Q ss_pred             HHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccc
Q psy12303        184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       184 ~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                      .+.+++.+        .+-.+.+.+++++++++++      +..|++++.+.-||...++.+|.++++++|+++..|-||
T Consensus       140 ~~~~~~~~--------~~~~~~~~P~~~~~~~~dd------~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAH  205 (407)
T COG3844         140 LADLLGIG--------YDLEGVIAPRALEEAITDD------VAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAH  205 (407)
T ss_pred             hhhhhccc--------ccceeeeChHHHHHhhccc------eEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhc
Confidence            45555543        2334556888999999998      999999999999999999999999999999999999999


Q ss_pred             cccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCcccccccccccCc---ccCCCCc
Q psy12303        264 GGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDV---RYDTGDK  339 (480)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~  339 (480)
                      +.|.++.+....       ++|+.+++.||++++++ +.+++++.++ ..+........|+.+.......   ....|..
T Consensus       206 saGavp~~Lh~~-------gaDfaigcsyKYLNgGPGapa~l~v~~~-h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~  277 (407)
T COG3844         206 SAGAVPVDLHAA-------GADFAIGCSYKYLNGGPGAPAGLFVAPR-HRERSWPPLSGWWGHARPFAMEEVYAPGPGAR  277 (407)
T ss_pred             ccCCcceeeccc-------CCCeeeeeeceeccCCCCCceeEEeccc-cccccccccccccCCCCcchhhhccCcCcccc
Confidence            999999988888       99999999999998654 4577776554 3344444455666554332111   2223334


Q ss_pred             cccCCCCC--CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC--CeEEecC----CceeEEEEEeecCccCC
Q psy12303        340 VIQCGRHN--DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD--KFYLILE----PEMVNVSFWYLPTRVRN  411 (480)
Q Consensus       340 ~~~~~r~~--~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~--g~~~~~~----~~~~~v~f~~~~~~~~~  411 (480)
                      .+.||...  +..++-.+|..++.-++.++.++...|+++|.+.++.+.+  ++++.+|    ..++.+.+.+. .    
T Consensus       278 rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp-~----  352 (407)
T COG3844         278 RFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHP-H----  352 (407)
T ss_pred             ceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecC-c----
Confidence            44455432  3445555677777778999999999999999999987445  7888764    34566777432 1    


Q ss_pred             CchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        412 MPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       412 ~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                                   ..++.+.|+++|++ ..   +.. ++.+|+.+...+++-+||-..++.|++++++
T Consensus       353 -------------~~~V~qaLi~rGVi-gD---~R~-P~vlRfgftPlY~~~~DVw~AV~~L~evL~t  402 (407)
T COG3844         353 -------------GYQVMQALIDRGVI-GD---FRE-PDVLRFGFTPLYVSFVDVWDAVDALEEVLDT  402 (407)
T ss_pred             -------------HHHHHHHHHHcCcc-cc---ccC-CCeeeecCccceechhHHHHHHHHHHHHHHh
Confidence                         35788999999954 22   223 6899999888999999999999999998764

>PLN02231 alanine transaminase

Probab=99.89  E-value=3.2e-20  Score=188.29  Aligned_cols=333  Identities=14%  Similarity=0.120  Sum_probs=215.7

Q ss_pred             CcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCc
Q psy12303        101 MFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH  178 (480)
Q Consensus       101 ~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h  178 (480)
                      ...|..+.+..++.+.+.+++.+..|.  +++++++|+|+++|+..++.++...             +|+ .|+++.+.|
T Consensus       161 ~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~-------------~gd-~Vli~~P~Y  226 (534)
T PLN02231        161 TGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-------------EKD-GILCPIPQY  226 (534)
T ss_pred             ccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccC-------------CCC-EEEEeCCCC
Confidence            455777788888999999999887675  5679999999999999999887532             445 788999999


Q ss_pred             hhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHc
Q psy12303        179 YSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKY  253 (480)
Q Consensus       179 ~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~  253 (480)
                      +.+...+...|.   +++.++.++  ++.+|+++|++++++...++.++++|++++|+||||.+.+   +++|.++|++|
T Consensus       227 ~~y~~~~~~~g~---~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~  303 (534)
T PLN02231        227 PLYSASIALHGG---TLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQE  303 (534)
T ss_pred             hhHHHHHHHcCC---EEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHc
Confidence            999999999987   788888875  3789999999999876655556899999999999999965   78889999999


Q ss_pred             CcEEEeecccccccccc-ccccC--cccC--CC--CCCccc-eeCccccCC--CcccceEEEEe--CchhhHhhhcCCcc
Q psy12303        254 NMWLHVDAAWGGGLLLS-KKYRH--PRLT--GI--ERADSV-TWNPHKLMG--TLLQCSTIHFK--QDGLLISCNQMSAE  321 (480)
Q Consensus       254 ~~~l~vD~a~~~~~~~~-~~~~~--~~~~--~~--~~~D~~-~~s~hK~~~--~p~~~g~~~~~--~~~~~~~~~~~~~~  321 (480)
                      |+++++|++|....+.. ..+..  ....  +.  .....+ ..|++|.+.  .+..+|++.+.  ++............
T Consensus       304 ~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~~  383 (534)
T PLN02231        304 GLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASV  383 (534)
T ss_pred             CCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHhh
Confidence            99999999998865421 11100  0000  11  111233 448999653  45789998763  44444433211110


Q ss_pred             cccccccccCcccCCCCccccCCCCCCchHHHHHHHH--hcHHH-------HHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        322 YLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA--KGDEG-------FEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       322 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~--~g~~~-------~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      .+                   |+.......+...+..  .|...       ..++.+...+.++.+.+.|++ ++|+.+ 
T Consensus       384 ~~-------------------~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~-~~gi~~-  442 (534)
T PLN02231        384 NL-------------------CSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNS-LEGVTC-  442 (534)
T ss_pred             hc-------------------CCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcee-
Confidence            00                   1110111111112210  01112       233456778888999999999 889987 


Q ss_pred             cCCceeEEEEEee--cCccCCCchhhHHHHhhhh-hHHHHHHHH-hcccEEEeeeeeCCc--ccEEEEecccCCCCHHHH
Q psy12303        393 LEPEMVNVSFWYL--PTRVRNMPHEKRLNILGEI-TPILKGRMM-QAGTMMVGYQPLNDL--PNFFRNIISSAAVTEGDI  466 (480)
Q Consensus       393 ~~~~~~~v~f~~~--~~~~~~~~~~~~~~~l~~~-~~~i~~~l~-~~g~~~~~~~~~~~~--~~~~R~~~~~~~~t~~di  466 (480)
                      .+|+++.+.|.-.  |..  ..   +..+.+... ...+..+|. +.|++++....+...  ..++|+++   ..+++++
T Consensus       443 ~~p~Ggfylw~~l~lp~~--~~---~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~---~~~~e~l  514 (534)
T PLN02231        443 NKAEGAMYLFPRIHLPQK--AI---KAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTI---LPQEDKI  514 (534)
T ss_pred             cCCCeeeEEeccccCcHH--HH---HHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEe---CCCHHHH
Confidence            5788888887322  111  00   000000000 112334454 567655554443211  35799994   3588999


Q ss_pred             HHHHHHHHHhhcc
Q psy12303        467 DFLLTEMDRLGHD  479 (480)
Q Consensus       467 ~~~~~~l~~~~~~  479 (480)
                      +..+++|.++.++
T Consensus       515 ~eal~RL~~~~~~  527 (534)
T PLN02231        515 PAIVSRLTEFHKS  527 (534)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887653

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=1.8e-21  Score=190.13  Aligned_cols=285  Identities=13%  Similarity=0.028  Sum_probs=194.3

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++.+++.+|++++++++|+|+++++..++.+...              ||+..|+++.+.|+.+...++..|+   +
T Consensus        63 ~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~~--------------~g~d~vlv~~P~y~~y~~~~~~~g~---~  125 (354)
T PRK04635         63 PELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCE--------------PGQDSIACFGPTYGMYAISAETFNV---G  125 (354)
T ss_pred             HHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhcC--------------CCCCeEEEcCCChHHHHHHHHHcCC---E
Confidence            3466778888999989999999999999988877643              4533788899999988888899998   8


Q ss_pred             eEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHc-CcEEEeeccccccccccccc
Q psy12303        195 CVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY-NMWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       195 v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~-~~~l~vD~a~~~~~~~~~~~  273 (480)
                      ++.+|.++++.+|++.+++ + +      ++++|++++|+||||.+.+.+++.++++.. ++++++|++|..+.......
T Consensus       126 v~~v~~~~~~~~~~~~l~~-~-~------~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~  197 (354)
T PRK04635        126 VKALPLTADYQLPLDYIEQ-L-D------GAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVA  197 (354)
T ss_pred             EEEEecCCCCCCCHHHHHh-c-c------CCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchH
Confidence            8999998778899988863 3 2      288999999999999999999999999874 79999999997654211100


Q ss_pred             cCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHH
Q psy12303        274 RHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL  352 (480)
Q Consensus       274 ~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~  352 (480)
                      .  .....+. -+++.|++|+++ .+..+|+++.+ ++.+........+|.                       ......
T Consensus       198 ~--~~~~~~~-~iv~~S~SK~~~l~GlRlG~~i~~-~~~~~~l~~~~~~~~-----------------------~~~~~~  250 (354)
T PRK04635        198 D--LLASYPN-LVVLRTLSKAFALAGARCGFTLAN-EELIEILMRVIAPYP-----------------------VPLPVS  250 (354)
T ss_pred             H--HHhhCCC-EEEEechHHHhhhhHHHHhhhhCC-HHHHHHHHhhcCCCC-----------------------CCHHHH
Confidence            0  1111111 145669999987 44678998864 445444332211111                       011122


Q ss_pred             HHHHHHh---cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHH
Q psy12303        353 WLQWRAK---GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILK  429 (480)
Q Consensus       353 ~~~l~~~---g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~  429 (480)
                      .+++..+   +.+.+++..++..+.++++.+.|++ ++++++. ++..+.+.+.+ + .                ..++.
T Consensus       251 ~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~-~~~g~f~~~~~-~-~----------------~~~~~  310 (354)
T PRK04635        251 EIATQALSEAGLARMKFQVLDLNAQGARLQAALSM-YGGAKVL-EGNGNYVLAKF-D-D----------------VDAVF  310 (354)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh-CCCceEC-CCCCcEEEEEC-C-C----------------HHHHH
Confidence            2222222   3445566677778888999999999 7668764 55544333322 1 1                12456


Q ss_pred             HHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        430 GRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       430 ~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      +.|.+.|+.+..... .+..+++|+++.    +++|+++++++|++.
T Consensus       311 ~~l~~~gv~v~~~~~-~~~~~~lRis~~----~~e~~~~l~~al~~~  352 (354)
T PRK04635        311 KALWDAGIVARAYKD-PRLANCIRFSFS----NRAETDKLIGLIRNQ  352 (354)
T ss_pred             HHHHHCCEEEEECCC-CCCCCeEEEEeC----CHHHHHHHHHHHHHh
Confidence            677778855543321 222579999942    789999999999864

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=9.2e-21  Score=185.77  Aligned_cols=286  Identities=14%  Similarity=0.085  Sum_probs=196.4

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCe
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNC  195 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v  195 (480)
                      ++++++++++|.+++++++|+|+++++..++.+..+              +|+ .|+++.++|+.+...+...|.   ++
T Consensus        68 ~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~--------------~gd-~v~~~~p~y~~~~~~~~~~g~---~~  129 (359)
T PRK03158         68 ELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALLN--------------PGT-NTVMAEPTFSQYRHNAIIEGA---EV  129 (359)
T ss_pred             HHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHhC--------------CCC-EEEEcCCCHHHHHHHHHHcCC---eE
Confidence            456678888898888999999999999877766643              445 788888999999898888888   88


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHH--cCcEEEeeccccccccccccc
Q psy12303        196 VEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQK--YNMWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       196 ~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~--~~~~l~vD~a~~~~~~~~~~~  273 (480)
                      +.+|.+ ++.+|++++++++++.      +++|++++++||||.+.+.++|.++++.  +|+++++|++|..+.......
T Consensus       130 ~~~~~~-~~~~d~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~  202 (359)
T PRK03158        130 REVPLK-DGGHDLEAMLKAIDEQ------TKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYP  202 (359)
T ss_pred             EEEecC-CCCcCHHHHHHhcCCC------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccc
Confidence            899987 6789999998887653      7889999999999999999999999987  599999999998765421100


Q ss_pred             -cCcccCCCCCCccceeCccccCCC-cccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchH
Q psy12303        274 -RHPRLTGIERADSVTWNPHKLMGT-LLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFK  351 (480)
Q Consensus       274 -~~~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~  351 (480)
                       ..+..... .-.+++.+++|.++. +..+|+++. +++.++........|.                       ...+.
T Consensus       203 ~~~~~~~~~-~~vi~~~S~SK~~g~~GlRiG~~v~-~~~~~~~~~~~~~~~~-----------------------~~~~~  257 (359)
T PRK03158        203 DTLPLLEKY-ENLIVLRTFSKAYGLAALRVGYGIA-SEELIEKLNIARPPFN-----------------------TTRIA  257 (359)
T ss_pred             cHHHHHHhc-CCEEEEEechHhhcCcchhhehhcC-CHHHHHHHHHhcCCCC-----------------------CCHHH
Confidence             00011111 234666799999984 467899885 4444444322211110                       12333


Q ss_pred             HHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHH
Q psy12303        352 LWLQWRAKG-DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKG  430 (480)
Q Consensus       352 ~~~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~  430 (480)
                      ..++...+. .+..++..+...+..+++.+.|.+ . ++.++ ++.. .+.+...+  ..              ..++.+
T Consensus       258 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~-~~~g-~~i~~~~~--~~--------------~~~~~~  317 (359)
T PRK03158        258 QYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKE-Y-GLFYY-PSQT-NFIFVDTG--RD--------------ANELFE  317 (359)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCeeC-CCcC-cEEEEECC--CC--------------HHHHHH
Confidence            334433332 344566666777788889999988 5 77764 4443 34332211  10              235667


Q ss_pred             HHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        431 RMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       431 ~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      .|.+.|+.+.....+ +..+++|+++.    +.+++++++++|+++
T Consensus       318 ~l~~~gv~v~~g~~f-~~~~~iRi~~~----~~~~~~~l~~al~~~  358 (359)
T PRK03158        318 ALLKKGYIVRSGAAL-GFPTGVRITIG----LKEQNDKIIELLKEL  358 (359)
T ss_pred             HHHHCCeEEeeCCCC-CCCCeEEEecC----CHHHHHHHHHHHHHh
Confidence            777888554443222 33679999943    799999999999876

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.89  E-value=1.4e-20  Score=185.13  Aligned_cols=290  Identities=16%  Similarity=0.072  Sum_probs=197.7

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCe
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNC  195 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v  195 (480)
                      ++++.+++++|++++++++|+|+++++..++.+..+              +|+ .|+++.++|..+...+...|.   ++
T Consensus        71 ~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l~~--------------~gd-~vl~~~p~y~~~~~~~~~~g~---~~  132 (367)
T PRK02731         71 ELKAALAEKFGVDPERIILGNGSDEILELLARAYLG--------------PGD-EVIYSEHGFAVYPIAAQAVGA---KP  132 (367)
T ss_pred             HHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcC--------------CCC-EEEEecCCHHHHHHHHHHcCC---eE
Confidence            567778888999878899999999988777665532              445 788888898888887888887   78


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHc--CcEEEeeccccccccccccc
Q psy12303        196 VEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY--NMWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       196 ~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~--~~~l~vD~a~~~~~~~~~~~  273 (480)
                      +.+|. +++.+|++++++++++.      +++|++++++||||.+.+.++|.++++.+  |+++++|++|..+.......
T Consensus       133 ~~~~~-~~~~~~~~~l~~~~~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~  205 (367)
T PRK02731        133 VEVPA-KDYGHDLDAMLAAVTPR------TRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYE  205 (367)
T ss_pred             EEecc-cCCCCCHHHHHHHhCCC------CcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcc
Confidence            88887 45789999999988643      88999999999999999999999999875  89999999998755321110


Q ss_pred             c-CcccCCCCCCccceeCccccCCC-cccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchH
Q psy12303        274 R-HPRLTGIERADSVTWNPHKLMGT-LLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFK  351 (480)
Q Consensus       274 ~-~~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~  351 (480)
                      . ...... ..-.+++.|+.|.++. +.++|+++.. ++..+........+            +           ...+.
T Consensus       206 ~~~~~~~~-~~~~i~~~S~SK~~g~~G~RiG~l~~~-~~~~~~l~~~~~~~------------~-----------~~~~~  260 (367)
T PRK02731        206 DGLELVAK-FPNVVVTRTFSKAYGLAGLRVGYGIAP-PEIIDALNRVRQPF------------N-----------VNSLA  260 (367)
T ss_pred             cHHHHHhh-cCCEEEEeeehHhhcCcccceeeeeCC-HHHHHHHHHccCCC------------C-----------CCHHH
Confidence            0 001111 1123556688999864 4678998864 44444332211111            0           12234


Q ss_pred             HHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHH
Q psy12303        352 LWLQWRAKG-DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKG  430 (480)
Q Consensus       352 ~~~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~  430 (480)
                      .+++...+. .+.+++..++..++.+.+.+.|++ . |+.+. ++....+++.. +....              ..++.+
T Consensus       261 ~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~g~~~~i~~-~~~~~--------------~~~~~~  322 (367)
T PRK02731        261 LAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAE-L-GLEYI-PSVGNFILVDF-DDGKD--------------AAEAYQ  322 (367)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCccC-CCCceEEEEEC-CCCCC--------------HHHHHH
Confidence            444444443 344677778888889999999999 5 77764 44544444433 22111              245677


Q ss_pred             HHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        431 RMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       431 ~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .|.+.|+.+...... +..+++|+++ +   +.+++++++++|+++++
T Consensus       323 ~L~~~gI~v~~~~~~-~~~~~iRis~-~---~~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        323 ALLKRGVIVRPVAGY-GLPNALRITI-G---TEEENRRFLAALKEFLA  365 (367)
T ss_pred             HHHHCCEEEEeCCCC-CCCCeEEEec-C---CHHHHHHHHHHHHHHHh
Confidence            888888544433222 2246999994 3   78999999999998765

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.89  E-value=6.2e-21  Score=186.42  Aligned_cols=289  Identities=11%  Similarity=0.049  Sum_probs=194.4

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++++++++|.+++++++|+|+++++..++.+. .              ||+ +++ ..+.+..+...++..|.   +
T Consensus        58 ~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l-~--------------~g~-viv-~~P~y~~~~~~~~~~g~---~  117 (356)
T PRK08056         58 RHLHQALARHHQVPASWILAGNGETESIFAVVSGL-K--------------PRR-AMI-VTPGFAEYRRALQQVGC---E  117 (356)
T ss_pred             HHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh-C--------------CCC-EEE-eCCCcHHHHHHHHHcCC---e
Confidence            46778899999998889999999999988877654 2              434 444 45678788888898888   8


Q ss_pred             eEEeeCCCC--CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCcEEEeeccccccccc
Q psy12303        195 CVEVPSDKR--GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLL  269 (480)
Q Consensus       195 v~~v~~~~~--~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~  269 (480)
                      ++.+|.+++  +.+| +++++.+.+      ++++|++++++||||.+.+   +++|+++|+++++++++|++|..+...
T Consensus       118 ~~~v~~~~~~~~~~~-~~~~~~~~~------~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~  190 (356)
T PRK08056        118 IRRYSLREADGWQLT-DAILEALTP------DLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPD  190 (356)
T ss_pred             EEEEecccccCCCcc-HHHHHhccC------CCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCc
Confidence            889988643  4455 345555543      2789999999999999988   888999999999999999999776432


Q ss_pred             cccccCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCC
Q psy12303        270 SKKYRHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHND  348 (480)
Q Consensus       270 ~~~~~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~  348 (480)
                      .... .+.+... ...+++.|++|+++ .+..+|+++..+...+.........+-                       ..
T Consensus       191 ~~~~-~~~~~~~-~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~~~~~-----------------------~~  245 (356)
T PRK08056        191 ETGF-IPQLADN-PHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQQMPWS-----------------------IN  245 (356)
T ss_pred             chHH-HHHhccC-CCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCCCCc-----------------------hh
Confidence            1110 0112222 34678889999999 557899998755544443321111110                       11


Q ss_pred             chHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHH
Q psy12303        349 IFKLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPI  427 (480)
Q Consensus       349 ~l~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~  427 (480)
                      .+...++...+ +.+..++..++..+.++++.+.|++ ++++.+. ++. +.+.|.-.+..                ..+
T Consensus       246 ~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~-~~~-~~~~~~~~~~~----------------~~~  306 (356)
T PRK08056        246 AFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCA-LPLLTVW-PGR-ANYLFLRCERP----------------DID  306 (356)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCcEEc-CCC-CcEEEEEcCCC----------------hHH
Confidence            22333333333 3445566677788899999999998 7888764 454 44444322211                135


Q ss_pred             HHHHHHhcccEEEeeeeeCCc-ccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        428 LKGRMMQAGTMMVGYQPLNDL-PNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       428 i~~~l~~~g~~~~~~~~~~~~-~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      +.+.|.+.|+.+.....+.+. .+++|+++.    +.++.+.++++|+++.+
T Consensus       307 ~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~----~~~~~~~l~~~l~~~~~  354 (356)
T PRK08056        307 LQRALLTQRILIRSCANYPGLDSRYYRVAIR----SAAENERLLAALRNVLT  354 (356)
T ss_pred             HHHHHHHCCeEEEECCCCCCCCCCEEEEEEc----CHHHHHHHHHHHHHHHc
Confidence            667777888654443333222 469999943    67999999999988754

>PRK09105 putative aminotransferase; Provisional

Probab=99.89  E-value=1.5e-20  Score=184.18  Aligned_cols=285  Identities=14%  Similarity=0.065  Sum_probs=196.7

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      ..++++.+++.+|.+++++++|+|+++++..++.+..+              ||+ .|++++++|+.+...++..|.   
T Consensus        80 ~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~~--------------~gd-~Vli~~P~y~~~~~~~~~~g~---  141 (370)
T PRK09105         80 EDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFTS--------------PTA-GLVTADPTYEAGWRAADAQGA---  141 (370)
T ss_pred             HHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHcC--------------CCC-EEEEeCCChHHHHHHHHHcCC---
Confidence            34567778899999888999999999999988887754              445 788899999999999999998   


Q ss_pred             CeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHH--cCcEEEeeccccccccccc
Q psy12303        194 NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQK--YNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       194 ~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~--~~~~l~vD~a~~~~~~~~~  271 (480)
                      +++.+|.++++.+|++++++. .+.      +++|++++|+||||.+.+.+++.++++.  +++|+++|++|..+... +
T Consensus       142 ~~~~v~~~~~~~~d~~~l~~~-~~~------~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~-~  213 (370)
T PRK09105        142 PVAKVPLRADGAHDVKAMLAA-DPN------AGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDA-P  213 (370)
T ss_pred             eEEEecCCCCCCCCHHHHHhc-CCC------CCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccC-c
Confidence            888999888888999998765 222      7789999999999999998888888764  48999999999654221 1


Q ss_pred             cccCcccCCCCCCc-cceeCccccCCC-cccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCc
Q psy12303        272 KYRHPRLTGIERAD-SVTWNPHKLMGT-LLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI  349 (480)
Q Consensus       272 ~~~~~~~~~~~~~D-~~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~  349 (480)
                      .. . .+... ..+ ++..|++|.++. +..+|+++. ++..+...... ..+.                       ...
T Consensus       214 s~-~-~~~~~-~~~vi~~~SfSK~~g~~GlRiG~~v~-~~~~i~~l~~~-~~~~-----------------------~~~  265 (370)
T PRK09105        214 SV-V-DLVAQ-RKDLIVLRTFSKLYGMAGMRLGLAAA-RPDLLAKLARF-GHNP-----------------------LPV  265 (370)
T ss_pred             ch-H-HHHhh-CCCEEEEecccHhhcCCccceeeeec-CHHHHHHHHhc-CCCC-----------------------cCH
Confidence            00 0 01111 234 444588999974 467899885 44444443221 0000                       112


Q ss_pred             hHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHH
Q psy12303        350 FKLWLQWRAKG-DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPIL  428 (480)
Q Consensus       350 l~~~~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i  428 (480)
                      ....++...+. .+.+++..++..++.+++.+.|++  .++++. ++..+.+.+.. +  ..              ..++
T Consensus       266 ~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~--~g~~~~-~~~~~f~~~~~-~--~~--------------~~~l  325 (370)
T PRK09105        266 PAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKK--KGYKCT-PSQANCFMVDV-K--RP--------------AKAV  325 (370)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--CCCCcC-CCCCcEEEEeC-C--CC--------------HHHH
Confidence            23333333332 355677778888899999999998  488764 56665554321 1  10              2356


Q ss_pred             HHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        429 KGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       429 ~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .+.|.++|+.+ .. .+.+..+++|+++.    +++++++++++|+++.+
T Consensus       326 ~~~L~~~gI~v-~~-~~~~~~~~~Ris~~----~~~~~~~l~~al~~~~~  369 (370)
T PRK09105        326 ADAMAKQGVFI-GR-SWPIWPNWVRVTVG----SEEEMAAFRSAFAKVMR  369 (370)
T ss_pred             HHHHHHCCcEE-ec-CCCCCCCeEEEEcC----CHHHHHHHHHHHHHHhh
Confidence            77787887544 22 12222579999943    57899999999988753

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.89  E-value=4.3e-20  Score=181.79  Aligned_cols=310  Identities=15%  Similarity=0.169  Sum_probs=192.6

Q ss_pred             HHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCC
Q psy12303        113 METVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGT  192 (480)
Q Consensus       113 ~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~  192 (480)
                      ...++.+.+++++|.+.  .+++++|+.|+..++.+..+              ||+ +|++++..|.++...+...+.  
T Consensus        44 ~~~~LE~~lA~~~g~e~--al~~~sG~~a~~~~i~~l~~--------------~GD-~Vl~~~~~h~s~~~~~~l~~~--  104 (392)
T PLN03227         44 AHLELEQCMAEFLGTES--AILYSDGASTTSSTVAAFAK--------------RGD-LLVVDRGVNEALLVGVSLSRA--  104 (392)
T ss_pred             HHHHHHHHHHHHhCCCc--EEEecCcHHHHHHHHHHhCC--------------CCC-EEEEeccccHHHHHHHHHcCC--
Confidence            34455666999999864  67777788888877777543              556 899999999999888877765  


Q ss_pred             CCeEEeeCCCCCCCCHHHHHHHHHHHHH--------CCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccc
Q psy12303        193 DNCVEVPSDKRGRLIPSELERLVLERKA--------KGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWG  264 (480)
Q Consensus       193 ~~v~~v~~~~~~~~d~~~L~~~i~~~~~--------~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~  264 (480)
                       ++++++.+     |++++++.++....        ...++++|+++.+++++|.+.|+++|.++|++||+++++|++|+
T Consensus       105 -~~~~~~~~-----d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~  178 (392)
T PLN03227        105 -NVRWFRHN-----DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFS  178 (392)
T ss_pred             -eEEEeCCC-----CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECccc
Confidence             66666665     56666665543321        12357899999999999999999999999999999999999998


Q ss_pred             cccccc-ccccCc--ccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccc
Q psy12303        265 GGLLLS-KKYRHP--RLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVI  341 (480)
Q Consensus       265 ~~~~~~-~~~~~~--~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  341 (480)
                      .+...- ......  .+....++|+++.+++|+++ |. .|+++ .+++...........+.++                
T Consensus       179 ~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g-~~-gg~v~-~~~~~~~~~~~~~~~~~~~----------------  239 (392)
T PLN03227        179 FGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFG-SV-GGMTV-GSEEVVDHQRLSGSGYCFS----------------  239 (392)
T ss_pred             ccccCCCCCcHHHHcCCCCCCCceEEEeechhhhh-cc-CcEEe-cCHHHHHHHHHhCcCcccc----------------
Confidence            543311 001010  11112367999999999876 33 24444 4444443322111111111                


Q ss_pred             cCCCCCCchHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe----------cCCceeEEEEEeecCccC
Q psy12303        342 QCGRHNDIFKLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI----------LEPEMVNVSFWYLPTRVR  410 (480)
Q Consensus       342 ~~~r~~~~l~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~----------~~~~~~~v~f~~~~~~~~  410 (480)
                         .......+++++..+ .....++++++.++++++|.+.|++  .++..+          ..+.+.++.+.+.+....
T Consensus       240 ---~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~--~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~  314 (392)
T PLN03227        240 ---ASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTN--SSHPYALKLRNRLVITSDPISPIIYLRLSDQEAT  314 (392)
T ss_pred             ---CCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh--cCCccccccccccccCCCCCCCEEEEEeCCHHHh
Confidence               111222334443322 1112356788889999999999985  232211          223344555543221100


Q ss_pred             CCchhhHHHHhhhhhHHHHHHHHhcccEEEeee-------eeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        411 NMPHEKRLNILGEITPILKGRMMQAGTMMVGYQ-------PLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       411 ~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~-------~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .    ....  .....++.+.+.++|.++....       +... +..+|++ .+..+|++||+++++.|++++++
T Consensus       315 ~----~~~~--~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P-~~~iR~~-~~~~~t~eei~~~~~~l~~~~~~  382 (392)
T PLN03227        315 R----RTDE--TLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVP-PPCLRVV-ANASHTREDIDKLLTVLGEAVEA  382 (392)
T ss_pred             h----hhhh--hhHHHHHHHHHHHCCCEEEecccccCCcCCCCC-CceEEEE-ecCCCCHHHHHHHHHHHHHHHHH
Confidence            0    0000  0112467888889996653211       0111 4678999 99999999999999999988754

>PRK07777 aminotransferase; Validated

Probab=99.89  E-value=3.1e-20  Score=183.82  Aligned_cols=323  Identities=12%  Similarity=0.061  Sum_probs=211.4

Q ss_pred             HHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCC--CC-CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCce
Q psy12303         93 LIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQ--GG-DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQL  169 (480)
Q Consensus        93 l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~--~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~  169 (480)
                      +...+......|...++..++++.+.+++.+.+|.+  +. ++++|+|+++|+..++.+...              ||+ 
T Consensus        46 ~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~--------------~gd-  110 (387)
T PRK07777         46 AQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVE--------------PGD-  110 (387)
T ss_pred             HHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhcC--------------CCC-
Confidence            333333333456556677888888889988888874  33 699999999999888776543              446 


Q ss_pred             EEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCC---CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---h
Q psy12303        170 VMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKR---GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---I  243 (480)
Q Consensus       170 ~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~---~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l  243 (480)
                      .|++..+.|..+..++...|.   +++.++.+++   +.+|+++|++++++.      +++|++++++||||.+.+   +
T Consensus       111 ~vli~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~  181 (387)
T PRK07777        111 EVLLIEPYYDSYAAVIAMAGA---HRVPVPLVPDGRGFALDLDALRAAVTPR------TRALIVNSPHNPTGTVLTAAEL  181 (387)
T ss_pred             EEEEeCCCchhhHHHHHHCCC---EEEEeecCCccCCCcCCHHHHHHhcCcc------cEEEEEcCCCCCCCccCCHHHH
Confidence            788888899999888898887   7788888653   579999999988654      889999999999999854   8


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccc-cCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcc
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKY-RHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAE  321 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~-~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~  321 (480)
                      ++|.++|++|++++++|++|+...+..... ....+.+..+.++++.|++|.++.| ..+|+++.. ...+...... ..
T Consensus       182 ~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~-~~l~~~~~~~-~~  259 (387)
T PRK07777        182 AAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGP-APLIAAVRAA-KQ  259 (387)
T ss_pred             HHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEecC-HHHHHHHHHH-Hh
Confidence            899999999999999999998765422110 0001122234578889999999844 668988754 3343332211 11


Q ss_pred             cccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEE
Q psy12303        322 YLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVS  401 (480)
Q Consensus       322 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~  401 (480)
                      +....                .+ ......+...+. .+...+++..+...+.++++.+.|++ . ++++. +|..+.++
T Consensus       260 ~~~~~----------------~~-~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~-~~~g~~~~  318 (387)
T PRK07777        260 YLTYV----------------GG-APFQPAVAHALD-HEDAWVAALRDSLQAKRDRLAAGLAE-A-GFEVH-DSAGTYFL  318 (387)
T ss_pred             hcccC----------------CC-CHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHh-C-CCCcc-CCCcceEE
Confidence            11000                00 011111111122 23456677778888899999999998 4 77764 56666555


Q ss_pred             EEeecCccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeee-eC----CcccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        402 FWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQP-LN----DLPNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       402 f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~-~~----~~~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                      |.-.+. ....+           ..++.+.|.+ .|+. +.++. +.    ...+++|+++.   ..++++++.+++|++
T Consensus       319 ~~~~~~-~~~~~-----------~~~~~~~l~~~~gv~-v~pg~~f~~~~~~~~~~~Ri~~~---~~~~~l~~~l~~l~~  382 (387)
T PRK07777        319 CADPRP-LGYDD-----------GTEFCRALPERVGVA-AIPMSVFYDPADAWNHLVRFAFC---KRDDTLDEAIRRLRA  382 (387)
T ss_pred             Eecccc-cCCCC-----------HHHHHHHHHHhCCEE-EeCchHhCCCCcCCCCeEEEEec---CCHHHHHHHHHHHHH
Confidence            532221 10000           2356677754 5644 44332 21    11468999953   369999999999988


Q ss_pred             hhc
Q psy12303        476 LGH  478 (480)
Q Consensus       476 ~~~  478 (480)
                      +..
T Consensus       383 ~~~  385 (387)
T PRK07777        383 LRG  385 (387)
T ss_pred             Hhc
Confidence            653

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=1.3e-20  Score=185.24  Aligned_cols=290  Identities=13%  Similarity=0.100  Sum_probs=199.3

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCe
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNC  195 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v  195 (480)
                      ++++++++++|+++.++++|+|+++++..++.+...              ||+ .|++..++|+.+...++..|+   ++
T Consensus        75 ~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~--------------~gd-~vli~~P~y~~~~~~~~~~g~---~~  136 (371)
T PRK05166         75 ALREAIAARTGVPADRIILGNGSEDLIAVICRAVLR--------------PGD-RVVTLYPSFPLHEDYPTMMGA---RV  136 (371)
T ss_pred             HHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcC--------------CCC-EEEEcCCChHHHHHHHHHcCC---eE
Confidence            577788999999888999999999998877776643              545 788888999988888899888   88


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHH--cCcEEEeeccccccccccccc
Q psy12303        196 VEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQK--YNMWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       196 ~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~--~~~~l~vD~a~~~~~~~~~~~  273 (480)
                      +.++.++++.+|++++++++++.      +++|++++++||||.+.+.+++.++++.  .++++++|++|..+.. ....
T Consensus       137 ~~v~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~-~~~~  209 (371)
T PRK05166        137 ERVTVTPDLGFDLDALCAAVARA------PRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAA-GDDY  209 (371)
T ss_pred             EEeecCCCCCCCHHHHHHhhhcC------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcC-CcCc
Confidence            99999888899999999988764      7889999999999999998777777764  4789999999987662 1111


Q ss_pred             cC--cccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCch
Q psy12303        274 RH--PRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIF  350 (480)
Q Consensus       274 ~~--~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l  350 (480)
                      ..  ..+.....--+++.|+.|.++ .+..+|++++.++............+.                       ...+
T Consensus       210 ~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~~~~-----------------------~~~~  266 (371)
T PRK05166        210 PSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRTPFN-----------------------VNGA  266 (371)
T ss_pred             ccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhccCCC-----------------------CCHH
Confidence            11  011111112356779999998 557899988766665544332211110                       1122


Q ss_pred             HHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHH
Q psy12303        351 KLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILK  429 (480)
Q Consensus       351 ~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~  429 (480)
                      ...+++..+ ..+.+++..+...+..+++.+.|++ . |+.+ .++. +.+.+.-.+..                ..++.
T Consensus       267 ~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~-~-g~~~-~p~~-g~fl~~~~~~~----------------~~~l~  326 (371)
T PRK05166        267 AQAAALAALDDEEHLAKGVALALAERERLKKELAE-M-GYRI-APSR-ANFLFFDARRP----------------ASAVA  326 (371)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-C-cCee-CCCc-CCEEEEeCCCC----------------HHHHH
Confidence            222222222 2455777778888888999999999 5 7775 3444 44433211110                23567


Q ss_pred             HHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        430 GRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       430 ~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      +.|.++|+.+. +....+..+++|+++.    +.++.+++++.|+++..
T Consensus       327 ~~l~~~gi~v~-p~~~~~~~~~iRi~~~----~~~~~~~l~~~l~~i~~  370 (371)
T PRK05166        327 EALLRQGVIVK-PWKQPGFETFIRVSIG----SPEENDHFVAALDKVLE  370 (371)
T ss_pred             HHHHHCCeEEe-cCCCCCCCCeEEEEcC----CHHHHHHHHHHHHHHhh
Confidence            78888885444 3322333679999954    57889999999887653

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.89  E-value=1.5e-20  Score=186.32  Aligned_cols=308  Identities=14%  Similarity=0.146  Sum_probs=198.7

Q ss_pred             hhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHH
Q psy12303        104 YEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS  183 (480)
Q Consensus       104 ~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~  183 (480)
                      |....+...+.+++.+++++++|.+. . +++++|+++++.++.++.+              ||+ +|+++...|+++..
T Consensus        70 ~~~~~g~~~l~~~l~~~l~~~~g~~~-~-i~~~sG~~a~~~a~~~~~~--------------~gd-~vi~~~~~~~~~~~  132 (385)
T TIGR01825        70 VRTIAGTLRLHEELEEKLAKFKKTEA-A-LVFQSGFNTNQGVLSALLR--------------KGD-IVLSDELNHASIID  132 (385)
T ss_pred             cCcccCCcHHHHHHHHHHHHHhCCCc-E-EEECcHHHHHHHHHHHhCC--------------CCC-EEEEEccccHHHHH
Confidence            33344556788889999999999753 3 4555568888888776643              556 78888899999988


Q ss_pred             HHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccc
Q psy12303        184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       184 ~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                      ++...|.   ++..++     .+|++++++.+++...  .++++|++++.++++|.+.|+++|.++|++||+++++|++|
T Consensus       133 ~~~~~g~---~~~~~~-----~~d~~~l~~~l~~~~~--~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~  202 (385)
T TIGR01825       133 GLRLTKA---TKKIYK-----HADMDDLDRVLRENPS--YGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAH  202 (385)
T ss_pred             HHHhcCC---ceEEeC-----CCCHHHHHHHHHhhcc--CCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcc
Confidence            8887776   555443     4789999988876421  24789999999999999999999999999999999999999


Q ss_pred             cccccccccccCcccCCC-CCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcccc
Q psy12303        264 GGGLLLSKKYRHPRLTGI-ERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQ  342 (480)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~-~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  342 (480)
                      +.+.+...........++ .+.|+++.+++|+++.+ + |+++ .+++...........|....                
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-g-G~~~-~~~~~~~~~~~~~~~~~~~~----------------  263 (385)
T TIGR01825       203 GSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVV-G-GYAA-GHKELIEYLKNRARPFLFST----------------  263 (385)
T ss_pred             cccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcC-C-CEEe-cCHHHHHHHHHhCccccccC----------------
Confidence            776542111000000111 25788889999999753 2 6555 44444444322111121110                


Q ss_pred             CCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhh
Q psy12303        343 CGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILG  422 (480)
Q Consensus       343 ~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~  422 (480)
                      .+......++..+++.+.  ...+..++..++++++.+.|++  .|+++. .+....+.+.. +..            . 
T Consensus       264 ~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~--~g~~~~-~~~~~~~~~~~-~~~------------~-  324 (385)
T TIGR01825       264 AQPPAVVAALAAAVDELQ--RSPELMERLWDNTRFFKAGLGK--LGYDTG-GSETPITPVVI-GDE------------K-  324 (385)
T ss_pred             CCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHH--cCCCCC-CCCCCEEEEEE-CCH------------H-
Confidence            000011123333343321  1234567778889999999998  488765 34444443332 111            0 


Q ss_pred             hhhHHHHHHHHhcccEEEeeeeeCC---cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        423 EITPILKGRMMQAGTMMVGYQPLND---LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       423 ~~~~~i~~~l~~~g~~~~~~~~~~~---~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                       ...++.+.|.++|+.. ....+..   ...++|++ ++..++++||++++++|++++++
T Consensus       325 -~~~~~~~~L~~~gi~v-~~~~~~~~~~~~~~iRi~-~~~~~~~e~i~~~~~~l~~~~~~  381 (385)
T TIGR01825       325 -AAQEFSRRLFDEGIFA-QSIVFPTVPRGTARIRNI-PTAEHTKDDLDQALDAYEKVGKE  381 (385)
T ss_pred             -HHHHHHHHHHHCCcEE-cccCCCCCCCCCceEEEE-EcCCCCHHHHHHHHHHHHHHHHH
Confidence             0245778888887543 3221111   13689999 88889999999999999998764

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.89  E-value=2.4e-21  Score=187.16  Aligned_cols=303  Identities=14%  Similarity=0.079  Sum_probs=199.8

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCC-CCeEECCC-hhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEe--cCCCchhHH
Q psy12303        107 APVFILMETVVLEKMRQIIGWQG-GDSILAPG-GSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFT--SDQCHYSVR  182 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~-~~~~~t~g-gt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~--~~~~h~s~~  182 (480)
                      ++-+.++-+++++.++++++.+. ..+++++| ||+|+..++.....              +|+.+.++  ....| .+.
T Consensus        32 ~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~--------------~~~~~l~i~~G~fg~-r~~   96 (349)
T TIGR01364        32 SKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLA--------------EGKVADYIVTGAWSK-KAA   96 (349)
T ss_pred             chHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC--------------CCCeEEEEECCHHHH-HHH
Confidence            35556888889999999999843 56777766 99999888876643              22322222  22223 245


Q ss_pred             HHHHHcCCCCCCeEEeeCCCC----CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEE
Q psy12303        183 SCAAVCGLGTDNCVEVPSDKR----GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLH  258 (480)
Q Consensus       183 ~~~~~~g~~~~~v~~v~~~~~----~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~  258 (480)
                      ..++.+|+    +..+..++.    -.+++++++.  ++      .+++|.+++..|.||...|     ++++.++++++
T Consensus        97 ~~a~~~g~----~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~v~~th~ETstGv~~~-----~l~~~~~~l~i  159 (349)
T TIGR01364        97 KEAKKYGV----VNVVASGKEGNYTKIPDPSTWEI--SE------DAAYVHYCANETIHGVEFR-----ELPDVKNAPLV  159 (349)
T ss_pred             HHHHHhCC----cEEEeccccCCCCCCCCHHhcCC--CC------CCCEEEEcCCCCcccEecc-----eecccCCCeEE
Confidence            66666665    233343322    2455555542  22      3889999999999999876     67777899999


Q ss_pred             eeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCC
Q psy12303        259 VDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGD  338 (480)
Q Consensus       259 vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  338 (480)
                      ||++++.+..+.+..++         |++++++||+++ |.|.|+++++++.+ ....+..+.|. ....    ...  .
T Consensus       160 VDavss~g~~~id~~~~---------d~~~~ssqK~lg-P~Glg~l~~s~~~~-~~~~~~~~~~~-~~~~----~~~--~  221 (349)
T TIGR01364       160 ADMSSNILSRPIDVSKF---------GLIYAGAQKNIG-PAGLTVVIVRKDLL-GRASRITPSML-NYKI----HAE--N  221 (349)
T ss_pred             EEccccccCccCCHHHc---------cEEEEecccccC-CCceEEEEECHHHH-hhcccCCCCcc-hHHH----HHh--c
Confidence            99999999988876544         699999999986 99999999877543 33322222221 1000    000  0


Q ss_pred             ccccCCCC-CCchHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-C--ce-eEEEEEeecCccCCC
Q psy12303        339 KVIQCGRH-NDIFKLWLQWRAKGDE-GFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-P--EM-VNVSFWYLPTRVRNM  412 (480)
Q Consensus       339 ~~~~~~r~-~~~l~~~~~l~~~g~~-~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~--~~-~~v~f~~~~~~~~~~  412 (480)
                      .....+-+ ....++..+++.+-.+ |++++.+++.++++++++.|++ ++|+..... +  .. .+++|.+....    
T Consensus       222 ~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~-~~gl~~~~~~~~~rs~~v~sf~~~~~~----  296 (349)
T TIGR01364       222 DSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDN-SNGFYRNPVDPRNRSRMNVVFTLGNEE----  296 (349)
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-CCCeeccCCCHHHcCCeEEEEecCChh----
Confidence            01111111 2445666777777777 6999999999999999999999 888765532 2  22 33555422110    


Q ss_pred             chhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        413 PHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       413 ~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                              +   ..++.+.+.++|. ++..... . .+.+|+| +.+++|++||+++++.|+++.++
T Consensus       297 --------~---~~~~~~~~~~~Gi-~~~~~~~-~-~g~vRvS-~~~~nt~edid~l~~al~~~~~~  348 (349)
T TIGR01364       297 --------L---EKRFLKEAEERGL-VSLKGHR-S-VGGMRAS-IYNAMPLEGVQALVDFMKEFQKK  348 (349)
T ss_pred             --------H---hHHHHHHHHHCCC-cccCCcc-c-cCeeEEE-CcCCCCHHHHHHHHHHHHHHHHh
Confidence                    1   1355577888886 4433221 1 3689999 78999999999999999997653

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.89  E-value=1.9e-20  Score=187.79  Aligned_cols=303  Identities=13%  Similarity=0.080  Sum_probs=203.3

Q ss_pred             hhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHH
Q psy12303        104 YEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS  183 (480)
Q Consensus       104 ~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~  183 (480)
                      |....+..++.+.+.+|+.+.++ ++.++++|+|+++++..++.+..+              ||+ .|++..++|+.+..
T Consensus       117 Y~~~~g~~~lr~~ia~~~~~~~~-~~~~Iiit~G~~~al~~~~~~l~~--------------pgd-~Vlv~~P~y~~~~~  180 (431)
T PRK15481        117 YGDAPVSPELHAWAARWLRDDCP-VAFEIDLTSGAIDAIERLLCAHLL--------------PGD-SVAVEDPCFLSSIN  180 (431)
T ss_pred             cCCcCCCHHHHHHHHHHHhhccC-CcCeEEEecCcHHHHHHHHHHhCC--------------CCC-EEEEeCCCcHHHHH
Confidence            43333445555555555554333 345899999999999999887754              556 78889999999999


Q ss_pred             HHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEec-cCCCccccccChH---HHHHHHHHc-CcEEE
Q psy12303        184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCT-SGTTVLGAFDPIE---EIADICQKY-NMWLH  258 (480)
Q Consensus       184 ~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~-~~~~~~G~~~~l~---~I~~i~~~~-~~~l~  258 (480)
                      .++..|+   +++.+|.++++ +|+++|++++++.      +++++++ +++||||.+.+.+   +|.++|+++ ++|++
T Consensus       181 ~~~~~g~---~~~~v~~~~~g-~~~~~l~~~~~~~------~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii  250 (431)
T PRK15481        181 MLRYAGF---SASPVSVDAEG-MQPEKLERALAQG------ARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVI  250 (431)
T ss_pred             HHHHcCC---eEEeeccCCCC-CCHHHHHHHHhcC------CCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEE
Confidence            9999998   88899987665 8999999988653      7777776 9999999998875   999999999 99999


Q ss_pred             eeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCC
Q psy12303        259 VDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGD  338 (480)
Q Consensus       259 vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  338 (480)
                      +|++|+..... + ... .+.....--+++.|++|.++.+..+|+++. ++................             
T Consensus       251 ~De~Y~~~~~~-~-~~~-~~~~~~~~vi~~~SfSK~~~~GlRiG~~i~-~~~~~~~~~~~~~~~~~~-------------  313 (431)
T PRK15481        251 IDDHFALLSSS-P-YHS-VIPQTTQRWALIRSVSKALGPDLRLAFVAS-DSATSARLRLRLNSGTQW-------------  313 (431)
T ss_pred             ecCchhhhccC-C-CCC-CCcCCCCCEEEEeeeccccCCCceeEEEeC-CHHHHHHHHHHHhccccC-------------
Confidence            99999876431 1 111 121111223667799999996678998775 444443332111100000             


Q ss_pred             ccccCCCCCCchHHHHHHHHh--c--HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCch
Q psy12303        339 KVIQCGRHNDIFKLWLQWRAK--G--DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPH  414 (480)
Q Consensus       339 ~~~~~~r~~~~l~~~~~l~~~--g--~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~  414 (480)
                              ...+...++...+  +  .+.+++..+...+..+.+.+.|++ . ++++ ..|..++++|...+..      
T Consensus       314 --------~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~-~-~~~~-~~p~gg~f~~~~l~~~------  376 (431)
T PRK15481        314 --------VSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQ-Y-GIAI-PSPGDGLNLWLPLDTD------  376 (431)
T ss_pred             --------CCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH-c-CCcc-ccCCCeEEEEEECCCC------
Confidence                    1222333333333  2  223566778888888999999998 4 7765 3566777766443321      


Q ss_pred             hhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC--CcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        415 EKRLNILGEITPILKGRMMQAGTMMVGYQPLN--DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       415 ~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~--~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                                ..++.+.|.+.|+.+.....+.  +..+++|+++..  .++++++.+++.|.+++.
T Consensus       377 ----------~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~--~~~~~i~~~~~~l~~~~~  430 (431)
T PRK15481        377 ----------SQATALTLAKSGWLVREGEAFGVSAPSHGLRITLST--LNDAEINRLAADLHQALN  430 (431)
T ss_pred             ----------HHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCC--CChHHHHHHHHHHHHHhc
Confidence                      1345667777886655433331  113689999544  368999999999998764

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.89  E-value=4.5e-20  Score=183.42  Aligned_cols=327  Identities=11%  Similarity=0.061  Sum_probs=210.8

Q ss_pred             HHHHHHHHcCcC-CcchhcChhhHHHHHHHHHHHHHHhC--CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCcc
Q psy12303         89 AGEWLIATANTN-MFTYEIAPVFILMETVVLEKMRQIIG--WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAI  165 (480)
Q Consensus        89 ~~~~l~~~~~~~-~~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~  165 (480)
                      +.+.+...+... ...|...++..++.+++.+++.+. |  +++.++++|+|+++|+..++.+..+              
T Consensus        53 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~-~~~~~~~~i~~t~G~~~al~~~~~~l~~--------------  117 (401)
T TIGR01264        53 VMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNP-DGPIEADDVVLCSGCSHAIEMCIAALAN--------------  117 (401)
T ss_pred             HHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhc-CCCCCHHHEEECcChHHHHHHHHHHhCC--------------
Confidence            334554444332 233544555566666666666542 2  4567899999999999988887753              


Q ss_pred             CCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC-
Q psy12303        166 KGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP-  242 (480)
Q Consensus       166 ~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~-  242 (480)
                      ||+ .|+++.++|..+...++..|+   +++.++++.  ++.+|++.|++++++.      +++|++++++||||.+.+ 
T Consensus       118 ~gd-~v~i~~P~y~~~~~~~~~~g~---~v~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~NPtG~~~~~  187 (401)
T TIGR01264       118 AGQ-NILVPRPGFPLYETLAESMGI---EVKLYNLLPDKSWEIDLKQLESLIDEK------TAALIVNNPSNPCGSVFSR  187 (401)
T ss_pred             CCC-EEEEeCCCChhHHHHHHHcCC---EEEEeecCCccCCCCCHHHHHHHhccC------ceEEEEcCCCCCCCCCCCH
Confidence            445 788888899889899999998   778887753  5789999999887654      788999999999999965 


Q ss_pred             --hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCC-CC-ccceeCcccc-CCCcccceEEEEeCc-----hhh
Q psy12303        243 --IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIE-RA-DSVTWNPHKL-MGTLLQCSTIHFKQD-----GLL  312 (480)
Q Consensus       243 --l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~-~~-D~~~~s~hK~-~~~p~~~g~~~~~~~-----~~~  312 (480)
                        +++|.++|+++|+++++|++|.......... . .+..+. .. -+++.|++|. +..+..+|++++.+.     ..+
T Consensus       188 ~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~-~-~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~  265 (401)
T TIGR01264       188 QHLEEILAVAERQCLPIIADEIYGDMVFSGATF-E-PLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIR  265 (401)
T ss_pred             HHHHHHHHHHHHCCCEEEEEhhhhhhccCCccc-c-cHHHcCCCCcEEEEccCcccCCCccceEEEEEecCcchhHHHHH
Confidence              7889999999999999999998765422111 0 111111 11 2567799997 455578999997642     122


Q ss_pred             HhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHH---HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCe
Q psy12303        313 ISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQ---WRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKF  389 (480)
Q Consensus       313 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~---l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~  389 (480)
                      ........... +                     ...+...+.   +.....+.+++..++..+..+++.+.|++ ++++
T Consensus       266 ~~~~~~~~~~~-~---------------------~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~-~~~~  322 (401)
T TIGR01264       266 DGLVKLSQRIL-G---------------------PCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAA-VPGL  322 (401)
T ss_pred             HHHHHHhhccC-C---------------------CCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHh-CCCC
Confidence            11111000000 0                     011222222   22222456777788888889999999999 7787


Q ss_pred             EEecCCceeEEEEEeecCc-cCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCCcccEEEEecccCCCCHHHHH
Q psy12303        390 YLILEPEMVNVSFWYLPTR-VRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDID  467 (480)
Q Consensus       390 ~~~~~~~~~~v~f~~~~~~-~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~  467 (480)
                      .+ ..|..++++|...+.. ..+.        .+  ..++.+++. +.|+.+.....+ +..+++|+++.   ..+++++
T Consensus       323 ~~-~~p~~g~f~~~~~~~~~~~~~--------~~--~~~~~~~l~~~~gI~v~pg~~f-~~~~~iRis~~---~~~~~l~  387 (401)
T TIGR01264       323 RP-VMPSGAMYMMVGIEMEHFPEF--------KN--DVEFTERLVAEQSVFCLPGSCF-EYPGFFRVVLT---VPVVMME  387 (401)
T ss_pred             cc-cCCCeeeEEEEEecccccCCC--------CC--HHHHHHHHHHhCCEEEeCchhc-CCCCeEEEEEc---CCHHHHH
Confidence            65 3577777766543211 0000        00  134556665 567554433333 33679999954   3589999


Q ss_pred             HHHHHHHHhhccC
Q psy12303        468 FLLTEMDRLGHDL  480 (480)
Q Consensus       468 ~~~~~l~~~~~~l  480 (480)
                      ..+++|.++++++
T Consensus       388 ~~l~rl~~~~~~~  400 (401)
T TIGR01264       388 EACSRIQEFCERH  400 (401)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999887653

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.89  E-value=3.6e-20  Score=184.16  Aligned_cols=324  Identities=13%  Similarity=0.136  Sum_probs=204.4

Q ss_pred             HHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHH-hCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC
Q psy12303         89 AGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQI-IGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG  167 (480)
Q Consensus        89 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~-~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g  167 (480)
                      +.+.+..... ....|....+..++.+++.+++... .++++.++++|+|+|+|+..++.+..+              ||
T Consensus        48 ~~~a~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--------------~g  112 (397)
T PRK07568         48 FFEAIKNYDE-EVLAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAICD--------------PG  112 (397)
T ss_pred             HHHHHHHHhc-CCcCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHhcC--------------CC
Confidence            3344544332 2234544445566666666655421 145667899999999999988876643              55


Q ss_pred             ceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC-CC-C-CCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC--
Q psy12303        168 QLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK-RG-R-LIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP--  242 (480)
Q Consensus       168 ~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~-~~-~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~--  242 (480)
                      + .|+++.+.|..+...++..|.   +++.++.+. ++ . .++++|++++++.      +++|++++++||||.+.+  
T Consensus       113 d-~Vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~g~~~~~~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~  182 (397)
T PRK07568        113 D-EILVPEPFYANYNGFATSAGV---KIVPVTTKIEEGFHLPSKEEIEKLITPK------TKAILISNPGNPTGVVYTKE  182 (397)
T ss_pred             C-EEEEecCCCccHHHHHHHcCC---EEEEeecCcccCCCCCCHHHHHHhcCcc------ceEEEEECCCCCCCccCCHH
Confidence            6 677777888777777788887   788888863 33 3 3578898888654      889999999999999875  


Q ss_pred             -hHHHHHHHHHcCcEEEeeccccccccccccccCc-ccCCCCCCccceeCccccCCC-cccceEEEEeCchhhHhhhcCC
Q psy12303        243 -IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHP-RLTGIERADSVTWNPHKLMGT-LLQCSTIHFKQDGLLISCNQMS  319 (480)
Q Consensus       243 -l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~~~~~  319 (480)
                       +++|.++|+++|+++++|++|+.+.......... .+.+...--+++.|++|.++. +..+|+++..++..........
T Consensus       183 ~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~  262 (397)
T PRK07568        183 ELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLC  262 (397)
T ss_pred             HHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHh
Confidence             7889999999999999999998765422111110 111111122566799999875 5789998876555544322111


Q ss_pred             cccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCce
Q psy12303        320 AEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEM  397 (480)
Q Consensus       320 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~  397 (480)
                      ...+ .                     ...+...++...+  +.+.+++..+...+.++.+.+.|++ ++++.+ ..|..
T Consensus       263 ~~~~-~---------------------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~-~~p~g  318 (397)
T PRK07568        263 QARL-S---------------------PPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNK-IPGVVC-EKPKG  318 (397)
T ss_pred             hccC-C---------------------CCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCcee-cCCCc
Confidence            0000 0                     1111222222222  4556777788888899999999998 778775 45666


Q ss_pred             eEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh------cccEEEeeeee---CC-cccEEEEecccCCCCHHHHH
Q psy12303        398 VNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ------AGTMMVGYQPL---ND-LPNFFRNIISSAAVTEGDID  467 (480)
Q Consensus       398 ~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~------~g~~~~~~~~~---~~-~~~~~R~~~~~~~~t~~di~  467 (480)
                      +.++|.-.+..    +           ..++.+.+.+      .|+.+.+...+   .+ ..+++|+++.   .++++++
T Consensus       319 ~~~~~~~l~~~----~-----------~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~---~~~~~~~  380 (397)
T PRK07568        319 AFYIIAKLPVD----D-----------AEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYV---LNEEDLK  380 (397)
T ss_pred             ceEEEEecCCC----C-----------HHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEe---CCHHHHH
Confidence            66554322211    1           1234444543      45444432222   11 1469999953   3579999


Q ss_pred             HHHHHHHHhhcc
Q psy12303        468 FLLTEMDRLGHD  479 (480)
Q Consensus       468 ~~~~~l~~~~~~  479 (480)
                      ..++.|.+.+++
T Consensus       381 ~~~~~l~~~l~~  392 (397)
T PRK07568        381 RAMEILKEALEK  392 (397)
T ss_pred             HHHHHHHHHHHH
Confidence            999999887653

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.89  E-value=5.5e-20  Score=182.49  Aligned_cols=323  Identities=10%  Similarity=0.004  Sum_probs=208.6

Q ss_pred             HHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC---CC-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCc
Q psy12303         89 AGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW---QG-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSA  164 (480)
Q Consensus        89 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~---~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~  164 (480)
                      +.+.+...++ ....|....+..++.+.+++++.+.+|.   ++ .++++|+|+++++..++.+..+.       .|   
T Consensus        47 ~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~-------~~---  115 (396)
T PRK09147         47 IKDALAANLD-GLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDR-------DG---  115 (396)
T ss_pred             HHHHHHHHhh-hhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHcCC-------CC---
Confidence            3345544443 2344655556678888888999888784   44 47999999999999888877541       00   


Q ss_pred             cCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC
Q psy12303        165 IKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP  242 (480)
Q Consensus       165 ~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~  242 (480)
                       .|+ .|+++.+.++.+..++..+|.   +++.||+++  ++.+|++++++.+.+.      +++|++++|+||||.+.+
T Consensus       116 -~gd-~vlv~~P~y~~~~~~~~~~g~---~~~~vp~~~~~~~~~d~~~l~~~~~~~------~k~i~l~nP~NPTG~~~s  184 (396)
T PRK09147        116 -PGP-LVVCPNPFYQIYEGAALLAGA---EPYFLNCDPANNFAPDFDAVPAEVWAR------TQLLFVCSPGNPTGAVLP  184 (396)
T ss_pred             -CCC-EEEEcCCCccchHHHHHhcCC---EEEEeccCccccCccCHHHHHHHHhhc------cEEEEEcCCCCCcCccCC
Confidence             145 788899999999999999998   889999864  3689999999887654      889999999999999965


Q ss_pred             ---hHHHHHHHHHcCcEEEeeccccccccccccccCcccC---CC--C--CCccceeCccccC-CCcccceEEEEeCchh
Q psy12303        243 ---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLT---GI--E--RADSVTWNPHKLM-GTLLQCSTIHFKQDGL  311 (480)
Q Consensus       243 ---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~---~~--~--~~D~~~~s~hK~~-~~p~~~g~~~~~~~~~  311 (480)
                         +++|.++|++|++||++|++|+...+.......+...   ..  .  .--+++.|++|.+ ..+..+|+++.. +.+
T Consensus       185 ~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~-~~l  263 (396)
T PRK09147        185 LDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGD-AAL  263 (396)
T ss_pred             HHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecCC-HHH
Confidence               7888888999999999999998865422100000010   01  0  1126677999965 544789998754 444


Q ss_pred             hHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeE
Q psy12303        312 LISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFY  390 (480)
Q Consensus       312 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~  390 (480)
                      ++...... .+...                    ....+...+++..+ ..+.+.+..+...+.++.+.+.|.+ .  +.
T Consensus       264 ~~~~~~~~-~~~~~--------------------~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~--~~  319 (396)
T PRK09147        264 LKKFLLYR-TYHGC--------------------AMPPAVQAASIAAWNDEAHVRENRALYREKFDAVTPILAP-V--LD  319 (396)
T ss_pred             HHHHHHHh-hhccc--------------------CCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH-h--cC
Confidence            44332111 11000                    01122222222222 2345666777777888888888877 3  44


Q ss_pred             EecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeC-------CcccEEEEecccCCCC
Q psy12303        391 LILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLN-------DLPNFFRNIISSAAVT  462 (480)
Q Consensus       391 ~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~-------~~~~~~R~~~~~~~~t  462 (480)
                      + ..|..+.++|...+  ..              ..++.+.+. +.|+.+.....+.       ...+++|+++..   +
T Consensus       320 ~-~~p~~g~f~~~~~~--~~--------------~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~---~  379 (396)
T PRK09147        320 V-QLPDAGFYLWAKVP--GD--------------DTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA---P  379 (396)
T ss_pred             C-CCCCeeEEEEEECC--CC--------------HHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC---C
Confidence            3 35777777665443  11              124556664 4575444332211       114799999543   5


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy12303        463 EGDIDFLLTEMDRLGH  478 (480)
Q Consensus       463 ~~di~~~~~~l~~~~~  478 (480)
                      ++++++.+++|++.++
T Consensus       380 ~~~l~~~l~rl~~~~~  395 (396)
T PRK09147        380 LAECVEAAERIVDFCR  395 (396)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            7899999999988753

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.89  E-value=4.2e-20  Score=182.24  Aligned_cols=314  Identities=15%  Similarity=0.109  Sum_probs=199.4

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCe
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNC  195 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v  195 (480)
                      ++++.+++++|.+.  .++++|||+|+..++.++.-.             ||+ .|+++..+|.++..++...|+   ++
T Consensus        33 ~le~~la~~~g~~~--~v~~~sgt~al~~~l~al~~~-------------~Gd-~Viv~~~~~~~~~~~~~~~G~---~~   93 (380)
T TIGR03588        33 AFEEALAEYVGAKY--AVAFNSATSALHIACLALGVG-------------PGD-RVWTTPITFVATANCALYCGA---KV   93 (380)
T ss_pred             HHHHHHHHHHCCCe--EEEEcCHHHHHHHHHHHcCCC-------------CCC-EEEeCCcchHHHHHHHHHcCC---EE
Confidence            34555888888864  677778999999888766211             556 799999999999999998888   88


Q ss_pred             EEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccccccc
Q psy12303        196 VEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYR  274 (480)
Q Consensus       196 ~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~  274 (480)
                      +++++++ ++.+|++++++++++.  ...++++|++++   ++|...|+++|.++|++||+++++|++|+.+... +...
T Consensus        94 ~~~~~~~~~~~~d~~~l~~~i~~~--~~~~t~~v~~~~---~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~-~~~~  167 (380)
T TIGR03588        94 DFVDIDPDTGNIDEDALEKKLAAA--KGKLPKAIVPVD---FAGKSVDMQAIAALAKKHGLKIIEDASHALGAEY-GGKP  167 (380)
T ss_pred             EEEecCCCcCCcCHHHHHHHhhcc--cCCCceEEEEeC---CCCccCCHHHHHHHHHHcCCEEEEECCCcccCcc-CCEe
Confidence            9999864 6789999999999732  111278888654   5799999999999999999999999999987652 2222


Q ss_pred             CcccCCCCCCccceeCcc--ccCCCcccceEEEEeCchhhHhhhcCCc-cccccccc-----ccCcccCCCCccccCCCC
Q psy12303        275 HPRLTGIERADSVTWNPH--KLMGTLLQCSTIHFKQDGLLISCNQMSA-EYLFMQDK-----LYDVRYDTGDKVIQCGRH  346 (480)
Q Consensus       275 ~~~~~~~~~~D~~~~s~h--K~~~~p~~~g~~~~~~~~~~~~~~~~~~-~~l~~~~~-----~~~~~~~~~~~~~~~~r~  346 (480)
                      .   ......|+.++|+|  |++..| ..|+++++++........... ........     .....++.+.  +....+
T Consensus       168 ~---g~~~~~d~~~~S~~~~K~~~~~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~g~n~~  241 (380)
T TIGR03588       168 V---GNCRYADATVFSFHPVKIITTA-EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQE--LGFNYR  241 (380)
T ss_pred             C---CCccccceEEEecCCCCccccc-CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeec--cccccC
Confidence            2   11124599999988  898765 456666677655543321100 00000000     0000011111  111222


Q ss_pred             CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCce-----eEEEEEeecCccCCCchhhHHHHh
Q psy12303        347 NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEM-----VNVSFWYLPTRVRNMPHEKRLNIL  421 (480)
Q Consensus       347 ~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~-----~~v~f~~~~~~~~~~~~~~~~~~l  421 (480)
                      ..-+.+...+..  .+.++++.++.+++++++.+.|.+ ++++.++.++..     ..+.+.+...  .+..        
T Consensus       242 m~~l~aa~g~~q--L~~l~~~~~~r~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~--------  308 (380)
T TIGR03588       242 MTDIQAALGLSQ--LKKLDRFVAKRREIAARYDRLLKD-LPYFTPLTIPLGSKSAWHLYPILLDQE--FGCT--------  308 (380)
T ss_pred             ccHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcC-CCCccCCCCCCCCEeEEEEEEEEECCc--CCCC--------
Confidence            333333333333  456788999999999999999999 888775543211     1122222111  1111        


Q ss_pred             hhhhHHHHHHHHhcccEEEe-eeee----------CC--c-------ccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        422 GEITPILKGRMMQAGTMMVG-YQPL----------ND--L-------PNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       422 ~~~~~~i~~~l~~~g~~~~~-~~~~----------~~--~-------~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                         ..++.+.|.+.|+.... +.+.          ..  .       ...+++. +++..|++||+++++.|++++
T Consensus       309 ---r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP-~~~~l~~~dv~~i~~~l~~~~  380 (380)
T TIGR03588       309 ---RKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLP-LHPALTLEQQQRVVETLRKVL  380 (380)
T ss_pred             ---HHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcC-CCCCCCHHHHHHHHHHHHHhC
Confidence               23566677777753210 0000          00  0       2578888 889999999999999998863

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.88  E-value=2.5e-20  Score=183.22  Aligned_cols=294  Identities=13%  Similarity=0.024  Sum_probs=201.3

Q ss_pred             hhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH
Q psy12303        108 PVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA  185 (480)
Q Consensus       108 ~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~  185 (480)
                      ++...+.+.+.+++.+..|.  +++++++|+|+++++..++.+..+              ||+ .|++..++|+.+..++
T Consensus        65 ~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~~--------------~gd-~v~v~~P~y~~~~~~~  129 (368)
T PRK03317         65 RDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGG--------------PGR-TALGFVPSYSMHPIIA  129 (368)
T ss_pred             CchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhcC--------------CCC-EEEEeCCChHHHHHHH
Confidence            45566777777777776664  667899999999999998887764              556 7888889999999988


Q ss_pred             HHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccc
Q psy12303        186 AVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGG  265 (480)
Q Consensus       186 ~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~  265 (480)
                      ...|.   +++.++.++++.+|++++++++++.     ++++|++++++||||.+.+.+++.++++.+++++++|++|+.
T Consensus       130 ~~~g~---~~~~~~~~~~~~~d~~~l~~~~~~~-----~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~  201 (368)
T PRK03317        130 RGTHT---EWVEGPRAADFTLDVDAAVAAIAEH-----RPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAE  201 (368)
T ss_pred             HhcCC---eeEEcccCCCCCCCHHHHHHHHhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchh
Confidence            88777   6777877777889999999998742     267888999999999999999999999999999999999997


Q ss_pred             cccccccccCcccCCCCCCc-cceeCccccCCC-cccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccC
Q psy12303        266 GLLLSKKYRHPRLTGIERAD-SVTWNPHKLMGT-LLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQC  343 (480)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~D-~~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  343 (480)
                      +............. . ..+ +++.|++|.++. +..+|+++. +++..........+|.                    
T Consensus       202 ~~~~~~~~~~~~~~-~-~~~~i~~~SfSK~~g~~GlRiG~~~~-~~~~~~~l~~~~~~~~--------------------  258 (368)
T PRK03317        202 FRRSGTPSALTLLP-E-YPRLVVSRTMSKAFAFAGGRLGYLAA-APAVVDALRLVRLPYH--------------------  258 (368)
T ss_pred             hcccCCcCHHHHHH-h-CCCEEEEEechhhhccchhhhhhhhC-CHHHHHHHHhcCCCCC--------------------
Confidence            64321110000111 1 123 455599999974 467898885 4455444332111110                    


Q ss_pred             CCCCCchHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhh
Q psy12303        344 GRHNDIFKLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILG  422 (480)
Q Consensus       344 ~r~~~~l~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~  422 (480)
                         ...+...++...+ ..+.+.+.+++..+..+++.+.|++  .|+.+. ++..+.+.|...+ .              
T Consensus       259 ---~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~-~~~~~~~~~~~~~-~--------------  317 (368)
T PRK03317        259 ---LSAVTQAAARAALRHADELLASVAALRAERDRVVAWLRE--LGLRVA-PSDANFVLFGRFA-D--------------  317 (368)
T ss_pred             ---CCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH--CCCEeC-CCCCcEEEEeccC-C--------------
Confidence               1122222222222 1234555667777888889999988  488764 5655555442111 0              


Q ss_pred             hhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        423 EITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       423 ~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                        ..++.+.|.++|+.+...    +..+++|+++.    +.++++++++.|+++++
T Consensus       318 --~~~~~~~l~~~Gv~v~~~----~~~~~iRi~~~----~~~~~~~~~~~l~~~~~  363 (368)
T PRK03317        318 --RHAVWQGLLDRGVLIRDV----GIPGWLRVTIG----TPEENDAFLAALAEVLA  363 (368)
T ss_pred             --HHHHHHHHHHCCEEEEeC----CCCCeEEEecC----CHHHHHHHHHHHHHHHH
Confidence              235667788888554332    22579999943    67899999999998764

>KOG0256|consensus

Probab=99.88  E-value=9.6e-21  Score=174.25  Aligned_cols=321  Identities=14%  Similarity=0.148  Sum_probs=225.3

Q ss_pred             hhhHHHHHHHHHHHHHHhC----CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHH
Q psy12303        108 PVFILMETVVLEKMRQIIG----WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS  183 (480)
Q Consensus       108 ~~~~~~e~~~~~~la~~~g----~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~  183 (480)
                      .+...+.+++++.+.+.-|    +++..+++++|+|.||.+.+.++.+              ||+ ..+++.+.++.+..
T Consensus       121 ~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLad--------------pgd-afLvPtPyY~gfdr  185 (471)
T KOG0256|consen  121 HGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLAD--------------PGD-AFLVPTPYYPGFDR  185 (471)
T ss_pred             cCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcC--------------CCc-eeeecCCCCCcccc
Confidence            4445667777777777766    3678899999999999988888766              766 89999999999988


Q ss_pred             HHHHc-CCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCcEE
Q psy12303        184 CAAVC-GLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMWL  257 (480)
Q Consensus       184 ~~~~~-g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l  257 (480)
                      -+++. |+   ++++|.+.+  +++++.++||+++.+.++.|.+++.|++++|+||.|++.+   |..+...|+++|+.+
T Consensus       186 dl~~rTgv---eivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHv  262 (471)
T KOG0256|consen  186 DLRWRTGV---EIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHV  262 (471)
T ss_pred             cceeccCc---eEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEE
Confidence            77775 44   788887764  5799999999999999999999999999999999999965   677778889999999


Q ss_pred             EeeccccccccccccccCcccC---CCC-CCcc--ceeCccccCCCc-ccceEEEEeCchhhHhhhcCCccccccccccc
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLT---GIE-RADS--VTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLY  330 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~---~~~-~~D~--~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  330 (480)
                      ++|++|++..+..+.+.. .+.   ..+ ..|.  ++++.+|-+|.| ...|+++..++.....+.....-++.....  
T Consensus       263 I~DEIya~sVF~~~~F~S-v~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~~vSs~t--  339 (471)
T KOG0256|consen  263 ISDEIYAGSVFDKSEFRS-VLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFGLVSSQT--  339 (471)
T ss_pred             EeehhhcccccCccCceE-HHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhccCCcHHH--
Confidence            999999998875544432 111   111 2233  567899999988 679999998887766544322222211100  


Q ss_pred             CcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccC
Q psy12303        331 DVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVR  410 (480)
Q Consensus       331 ~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~  410 (480)
                                      -..++..++=..+-.+.+.+..+|....-+++.+.|++  .|+..+ +...+.+||......+.
T Consensus       340 ----------------Q~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~--lgI~cl-~s~AGlF~wvDlr~lL~  400 (471)
T KOG0256|consen  340 ----------------QYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKA--LGIPCL-KSNAGLFCWVDLRKLLT  400 (471)
T ss_pred             ----------------HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHh--cCCcee-ecCCeeEEEEEhHHhcC
Confidence                            01112222223344566677777888888899999999  799986 67889999875544433


Q ss_pred             CCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC--CcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        411 NMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN--DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       411 ~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~--~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      ..   .+..++     ++++++...-.+.++++...  ..++|+|+||.+  +.++.++-.+++|+..+.
T Consensus       401 s~---tfe~El-----~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFAn--~~~~t~~~am~Ri~~~~~  460 (471)
T KOG0256|consen  401 SL---TFEGEL-----ELWERILDNVKLNLSPGSSCHCHEPGWFRVCFAN--MSEETLEVAMRRLKQFLD  460 (471)
T ss_pred             cC---ChHHHH-----HHHHHHHHhhccccCCCCcceecCCCeEEEEecc--CCHHHHHHHHHHHHHHHH
Confidence            22   122222     45666666633445543221  127899999754  456666668888877653

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.88  E-value=2.2e-21  Score=188.41  Aligned_cols=305  Identities=15%  Similarity=0.058  Sum_probs=199.0

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCC-CCeEEC-CChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH
Q psy12303        107 APVFILMETVVLEKMRQIIGWQG-GDSILA-PGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC  184 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~-~~~~~t-~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~  184 (480)
                      ++-+.++.+++++.+++++|.++ ..++++ ++||.++..++......        |.   + ..+|+.....|- +...
T Consensus        43 ~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~~--------g~---~-~l~i~~G~fg~r-~~~~  109 (360)
T PRK05355         43 SKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLGG--------GK---K-ADYVDTGSWSKK-AIKE  109 (360)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCCC--------CC---e-EEEEECCHHHHH-HHHH
Confidence            45556888899999999999843 456555 56666666665554431        11   1 113333333333 4566


Q ss_pred             HHHcCCCCCCeEEeeCCC-CCCCCHHHHHH-HHHHHHHCCCccEEEEeccCCCcccccc-ChHHHHHHHHHcCcEEEeec
Q psy12303        185 AAVCGLGTDNCVEVPSDK-RGRLIPSELER-LVLERKAKGDIPFFVNCTSGTTVLGAFD-PIEEIADICQKYNMWLHVDA  261 (480)
Q Consensus       185 ~~~~g~~~~~v~~v~~~~-~~~~d~~~L~~-~i~~~~~~~~~~~~v~~~~~~~~~G~~~-~l~~I~~i~~~~~~~l~vD~  261 (480)
                      ++..|.   . ..++.++ .+..+..++++ +++++      +++|.+++..|.||... |+++|      +|++++||+
T Consensus       110 a~~~g~---~-~~~~~~~~~g~~~~~~~~~~~l~~~------~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDa  173 (360)
T PRK05355        110 AKKYGE---V-NVAASSEDDGFTYIPPLDEWQLSDD------AAYVHYTSNETIDGTEFHELPDT------GDVPLVADM  173 (360)
T ss_pred             HHHhCC---c-eEEecccccCCCCCCChhhccCCCC------CCEEEEccCCCcceEecCccccc------CCCcEEEEc
Confidence            677774   3 4455443 45555555555 66543      78999999999999997 77777      899999999


Q ss_pred             cccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccc
Q psy12303        262 AWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVI  341 (480)
Q Consensus       262 a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  341 (480)
                      +++.+..+.+..++         |++++++||+++ |.|.|+++++++.+ ....+..+.|+......     ...  ..
T Consensus       174 vss~g~~~idv~~~---------d~~~~ssqK~lg-P~Glg~l~~s~~~l-~~~~~~~~~~~~~~~~~-----~~~--~~  235 (360)
T PRK05355        174 SSDILSRPIDVSKF---------GLIYAGAQKNIG-PAGLTIVIVREDLL-GRALPSIPSMLDYKTHA-----DND--SM  235 (360)
T ss_pred             CccccCccCCHHHc---------cEEEEecccccc-CCceEEEEECHHHH-hhcccCCChHHHHHHHH-----hcC--Cc
Confidence            99999988876544         699999999986 99999999987643 33322112222111000     000  01


Q ss_pred             cCCCC-CCchHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC--ce-eEEEEEeecCccCCCchhh
Q psy12303        342 QCGRH-NDIFKLWLQWRAKGDE-GFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP--EM-VNVSFWYLPTRVRNMPHEK  416 (480)
Q Consensus       342 ~~~r~-~~~l~~~~~l~~~g~~-~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~--~~-~~v~f~~~~~~~~~~~~~~  416 (480)
                      +.+-+ ....++..+++.+-.+ |++++.+++.++++++++.|++ ++.+..+.++  .+ .+++|... ...       
T Consensus       236 ~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~-~~~~~~~~~~~~rs~~v~sf~~~-~~~-------  306 (360)
T PRK05355        236 YNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDS-SDFYRNPVAPEDRSRMNVPFTLA-DEE-------  306 (360)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh-CCCcccCCChhhcCCcEEEEEcC-ChH-------
Confidence            11111 2445666777777677 7999999999999999999999 6633332222  23 34666432 110       


Q ss_pred             HHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        417 RLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       417 ~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                          +   ..++.+.+.+.|..+ .. .... .+.+|+| +.+++|++||+++++.|+++++
T Consensus       307 ----~---~~~~~~~~~~~Gi~~-~~-~~~~-~g~vRiS-~~~~nt~eei~~l~~~l~~~~~  357 (360)
T PRK05355        307 ----L---DKKFLAEAKAAGLVG-LK-GHRS-VGGMRAS-IYNAMPLEGVQALVDFMKEFER  357 (360)
T ss_pred             ----H---HHHHHHHHHHCCCcc-cC-CCCc-cCcEEEE-CCCCCCHHHHHHHHHHHHHHHH
Confidence                1   134557777888664 32 2222 4689999 7899999999999999999765

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.88  E-value=7.3e-20  Score=181.22  Aligned_cols=324  Identities=11%  Similarity=0.056  Sum_probs=210.2

Q ss_pred             HHHHHHHc-CcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCC-CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCcc
Q psy12303         90 GEWLIATA-NTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGG-DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAI  165 (480)
Q Consensus        90 ~~~l~~~~-~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~  165 (480)
                      .+.+...+ +.....|...++..++.+++.+|+.+..|.  +++ ++++|+|+++++..++.+..+              
T Consensus        49 ~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~--------------  114 (388)
T PRK07366         49 LEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLN--------------  114 (388)
T ss_pred             HHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCC--------------
Confidence            34444333 233344655566678888888888887774  555 699999999999988877654              


Q ss_pred             CCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCC--CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC-
Q psy12303        166 KGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKR--GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP-  242 (480)
Q Consensus       166 ~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~--~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~-  242 (480)
                      ||+ .|++..++++.+...++..|.   +++.+|.+++  +.+|++++++.+.+.      +++|++++++||||.+.+ 
T Consensus       115 ~gd-~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~p~NPTG~~~s~  184 (388)
T PRK07366        115 PGD-FALLLDPGYPSHAGGVYLAGG---QIYPMPLRAENDFLPVFADIPTEVLAQ------ARLMVLSYPHNPTTAIAPL  184 (388)
T ss_pred             CCC-EEEEcCCCCcchHHHHHhcCC---EEEEEECCCccCCCCCHHHHHHhhccc------ceEEEEeCCCCCCCccCCH
Confidence            556 788899999999999999998   8889998753  567888888777543      789999999999999976 


Q ss_pred             --hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCC---CccceeCccccCC-CcccceEEEEeCchhhHhhh
Q psy12303        243 --IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIER---ADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCN  316 (480)
Q Consensus       243 --l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~---~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~  316 (480)
                        +++|.++|++||+||++|++|.......... .+.+...+.   .-+++.|++|.++ .+..+|+++. +++++....
T Consensus       185 ~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~-~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~-~~~li~~l~  262 (388)
T PRK07366        185 SFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVE-PPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIG-NAQLIQALR  262 (388)
T ss_pred             HHHHHHHHHHHHcCeEEEEecchhhcccCCCCC-CCChhhCCCCcccEEEEeecccccCCcchhheehcC-CHHHHHHHH
Confidence              5677778999999999999998775422110 111111111   1245679999996 4478999885 555554432


Q ss_pred             cCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc
Q psy12303        317 QMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE  396 (480)
Q Consensus       317 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~  396 (480)
                      .....+....            .      ......+...+.. ..+.+++..+...+..+++.+.|++ . ++.+ ..|.
T Consensus       263 ~~~~~~~~~~------------~------~~~~~~a~~~l~~-~~~~l~~~~~~~~~~r~~l~~~L~~-~-~~~~-~~p~  320 (388)
T PRK07366        263 QVKAVVDFNQ------------Y------RGILNGAIAALTG-PQATVQQTVQIFRQRRDAFINALHQ-I-GWPV-PLPE  320 (388)
T ss_pred             HHHhhcccCC------------C------HHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcc-cCCC
Confidence            2111111000            0      0000011122211 2456777888888899999999998 5 7764 3566


Q ss_pred             eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCCc-ccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        397 MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLNDL-PNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       397 ~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~~-~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                      .++++|...+..... +           ..++.+.+. +.|+.+.....+... .+++|+++.   .+++++++.+++|+
T Consensus       321 ~g~f~~~~~~~~~~~-~-----------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~---~~~~~l~~~l~rl~  385 (388)
T PRK07366        321 ATMYVWAKLPEPWQG-N-----------SVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALV---HDPDILEEAVERIA  385 (388)
T ss_pred             eeEEEEEECCcccCC-C-----------HHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEec---CCHHHHHHHHHHHH
Confidence            777666444332110 0           124555554 557544443222221 479999954   36899999999998


Q ss_pred             Hh
Q psy12303        475 RL  476 (480)
Q Consensus       475 ~~  476 (480)
                      ++
T Consensus       386 ~~  387 (388)
T PRK07366        386 AF  387 (388)
T ss_pred             Hh
Confidence            75

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.88  E-value=9.2e-20  Score=172.61  Aligned_cols=316  Identities=17%  Similarity=0.124  Sum_probs=213.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        110 FILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .+++|-++.+.+.++++.- ..+.|+++||||++.||+.||..       .|.     +..|....+.|.+......-.|
T Consensus        91 Pte~Ei~~Aell~~~~p~~-e~vrfvnSGTEAtmsAiRlARa~-------TgR-----~kIikF~G~YHG~~D~~lv~ag  157 (432)
T COG0001          91 PTELEVELAELLIERVPSI-EKVRFVNSGTEATMSAIRLARAY-------TGR-----DKIIKFEGCYHGHSDSLLVKAG  157 (432)
T ss_pred             CCHHHHHHHHHHHHhcCcc-cEEEEecchhHHHHHHHHHHHHh-------hCC-----CeEEEEcCCCCCCccHHHhhcC
Confidence            4688888999999998872 24999999999999999999975       332     4467777788888777766554


Q ss_pred             CCC----------------CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHH
Q psy12303        190 LGT----------------DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADI  249 (480)
Q Consensus       190 ~~~----------------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i  249 (480)
                      -+.                ..++.+|.|     |++++++++++.   |...++|++.....+.|.+.|    ++++.++
T Consensus       158 sg~~t~g~p~s~Gvp~~~a~~ti~~~yN-----D~~al~~~~~~~---g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~l  229 (432)
T COG0001         158 SGAATLGSPSSPGVPADVAKHTLVLPYN-----DLEALEEAFEEY---GDDIAAVIVEPVAGNMGVVPPEPGFLEGLREL  229 (432)
T ss_pred             cCcccCCCCCCCCCChhhhccEEEecCC-----CHHHHHHHHHHc---CCcEEEEEeccccCCCCCCCCCHHHHHHHHHH
Confidence            221                245666766     999999999875   334999999999999999977    8999999


Q ss_pred             HHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccc
Q psy12303        250 CQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKL  329 (480)
Q Consensus       250 ~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  329 (480)
                      |+++|+.||.|++..++.+..... . ...|+ .+|..+  +.|.++++.++|++-- .+++++...+..+.|..++   
T Consensus       230 t~e~G~lLI~DEViTGFR~~~gGa-q-~~~gi-~PDltt--lGKiIGGGlP~ga~gG-r~eiM~~~~p~g~vyqaGT---  300 (432)
T COG0001         230 TEEHGALLIFDEVITGFRVALGGA-Q-GYYGV-EPDLTT--LGKIIGGGLPIGAFGG-RAEIMEQLAPLGPVYQAGT---  300 (432)
T ss_pred             HHHcCcEEEEecchhhcccCCccc-c-cccCc-Ccchhh--hhhhhcCCcceeeecc-HHHHHhhhCCCCCccccCC---
Confidence            999999999999999987753322 2 34566 789999  6799999999999874 4566665443333333221   


Q ss_pred             cCcccCCCCccccCCCCCCchHHHHHHHHhcH-HH-HHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecC
Q psy12303        330 YDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGD-EG-FEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPT  407 (480)
Q Consensus       330 ~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~-~~-~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~  407 (480)
                               .   .+.+....+-.++++.+-. ++ |+.+.+.-.+|++-|.+.+.+  .++.+......+++++.|.+.
T Consensus       301 ---------~---sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~--~g~~~~v~~~gsm~~i~F~~~  366 (432)
T COG0001         301 ---------L---SGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAER--HGIPLTVNRVGSMFGIFFTEE  366 (432)
T ss_pred             ---------C---CCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH--hCCCeEEeeecceEEEEecCC
Confidence                     1   1111223333444444432 22 555555555555555555555  466665556677788877765


Q ss_pred             ccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        408 RVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       408 ~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+.+..+... .... .-.++...|.++| +++.+..+.       ..|++..+|++||+++++++++..++
T Consensus       367 ~~~n~~da~~-sd~~-~~~~~~~~~l~~G-V~l~ps~~e-------a~flS~ahte~di~~~~~a~~~~~~~  428 (432)
T COG0001         367 GVRNYADAKR-SDVE-RFAKFFHHLLNRG-VYLAPSQFE-------AGFLSTAHTEEDIDRTLEAADEAFKE  428 (432)
T ss_pred             CCCCHHHHHh-hchH-HHHHHHHHHHhCC-cccCCcccc-------ceeeecccCHHHHHHHHHHHHHHHHH
Confidence            4433222110 0011 1235556888898 455553322       23577888999999999999987654

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.88  E-value=3.2e-20  Score=182.16  Aligned_cols=286  Identities=14%  Similarity=0.082  Sum_probs=185.1

Q ss_pred             HHHHHHHHHHhCCCCCCeEE-CCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSIL-APGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~-t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      .++++.+++++|++++++++ ++|+++++..++.+...              ||+ .|+++.+.|+.+...++..|+   
T Consensus        72 ~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~~~~--------------~gd-~vlv~~p~y~~~~~~~~~~g~---  133 (361)
T PRK00950         72 PELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTFID--------------PGD-EVIIPTPTFSYYEISAKAHGA---  133 (361)
T ss_pred             HHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHHhcC--------------CCC-EEEEcCCChHHHHHHHHHcCC---
Confidence            45677788889998888888 67777777777665532              445 788888888888888888887   


Q ss_pred             CeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccc
Q psy12303        194 NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       194 ~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~  273 (480)
                      +++.+|.++++.+|++++++++++.      +++|++++++||||.+.|++++.++|+++|+++++|++|+.+.-  ...
T Consensus       134 ~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~~--~~~  205 (361)
T PRK00950        134 KPVYAKREEDFSLDVDSVLNAITEK------TKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFAE--YDY  205 (361)
T ss_pred             EEEEeecCCCCCcCHHHHHHHhccC------CCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhCc--cch
Confidence            7888988777899999999988653      78889999999999999999999999999999999999976531  111


Q ss_pred             cCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHH
Q psy12303        274 RHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL  352 (480)
Q Consensus       274 ~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~  352 (480)
                      .. ..... .--+++.|++|.++.| ..+|+++. ++............+.                       ...+..
T Consensus       206 ~~-~~~~~-~~vi~~~S~SK~~g~~GlRiG~~~~-~~~~~~~~~~~~~~~~-----------------------~~~~~~  259 (361)
T PRK00950        206 TP-LALEY-DNLIIGRTFSKVFGLAGLRIGYGFV-PEWLIDYYMRAKTPFS-----------------------LTRLSQ  259 (361)
T ss_pred             HH-HHHhc-CCEEEEEeehHhhcCchhhcchhcC-CHHHHHHHHHhcCCCC-----------------------CCHHHH
Confidence            11 11111 1124556899999844 56888875 3444433322111110                       112233


Q ss_pred             HHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHH
Q psy12303        353 WLQWRAKG-DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGR  431 (480)
Q Consensus       353 ~~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~  431 (480)
                      ..++..+. .+.+++..++..++++++.+.|     ++.+. ++....+.+.. + ..   +           ..++.+.
T Consensus       260 ~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l-----~~~~~-~~~~~~i~~~~-~-~~---~-----------~~~~~~~  317 (361)
T PRK00950        260 AAAIAALSDKEYIEKSIEHGIKSREYLYNEL-----PFKVY-PSEANFVLVDV-T-PM---T-----------AKEFCEE  317 (361)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHhhc-----CeeEC-CCcceEEEEEC-C-CC---C-----------HHHHHHH
Confidence            33333332 2334555555555555554443     24442 33333333322 1 11   0           2456777


Q ss_pred             HHhcccEEEeeeeeCCc-ccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        432 MMQAGTMMVGYQPLNDL-PNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       432 l~~~g~~~~~~~~~~~~-~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      |.++|+.+.....+.+. .+++|+++.    +.+++++++++|+++++
T Consensus       318 l~~~gv~v~~~~~f~~~~~~~lRis~~----~~~~~~~l~~~L~~il~  361 (361)
T PRK00950        318 LLKRGVIVRDCTSFRGLGDYYIRVSIG----TFEENERFLEILKEIVE  361 (361)
T ss_pred             HHHCCEEEeeCCccCCCCCCeEEEECC----CHHHHHHHHHHHHHHhC
Confidence            87888544332222221 469999943    77899999999998753

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.88  E-value=3.2e-20  Score=182.33  Aligned_cols=295  Identities=18%  Similarity=0.205  Sum_probs=191.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      ..+..++++.+++++|.+.  .+++++|++++..++.++..              ||+ +|+++..+|++...++...|.
T Consensus        60 ~~~~~~l~~~la~~~~~~~--~i~~~~G~~~~~~~l~~~~~--------------~gd-~v~~~~~~~~~~~~~~~~~g~  122 (360)
T TIGR00858        60 SPLHEELEEELAEWKGTEA--ALLFSSGYLANVGVISALVG--------------KGD-LILSDALNHASLIDGCRLSGA  122 (360)
T ss_pred             cHHHHHHHHHHHHHhCCCC--EEEECchHHHHHHHHHHhCC--------------CCC-EEEEEccccHHHHHHHHhcCC
Confidence            3455567788888888643  45555667888777665532              445 788889999999999998887


Q ss_pred             CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccc
Q psy12303        191 GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLS  270 (480)
Q Consensus       191 ~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~  270 (480)
                         +++.++.     +|+++|++.+++..  +.++++|++.++++++|.+.|+++|.++|+++|+++++|++|+.+.+..
T Consensus       123 ---~~~~~~~-----~d~~~l~~~~~~~~--~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~  192 (360)
T TIGR00858       123 ---RVRRYRH-----NDVEHLERLLEKNR--GERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGE  192 (360)
T ss_pred             ---ceEEecC-----CCHHHHHHHHHHcc--cCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCC
Confidence               6666664     58999999987531  1237889999999999999999999999999999999999998664422


Q ss_pred             ccccCcccCCC--CCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC-C
Q psy12303        271 KKYRHPRLTGI--ERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-N  347 (480)
Q Consensus       271 ~~~~~~~~~~~--~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-~  347 (480)
                      .........++  .+.|+++.+++|+++. .| |+++. +++...........+...                 .+.. .
T Consensus       193 ~~~~~~~~~~~~~~~~~i~i~s~sK~~~~-~g-G~~~~-~~~~~~~~~~~~~~~~~~-----------------~~~~~~  252 (360)
T TIGR00858       193 DGRGTLEHFGLKPEPVDIQVGTLSKALGS-YG-AYVAG-SQALIDYLINRARTLIFS-----------------TALPPA  252 (360)
T ss_pred             CCCchHHhcCCCccCCcEEEEechhhhhc-cC-cEEEc-CHHHHHHHHHhCccceec-----------------CCCCHH
Confidence            11100011222  2568888999999985 33 66654 444444322111111110                 0000 1


Q ss_pred             CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHH
Q psy12303        348 DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPI  427 (480)
Q Consensus       348 ~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~  427 (480)
                      ...++..+++.+  +..+++.++..++++++.+.|++ . ++++. ++....+.+.+ +..            .+  ..+
T Consensus       253 ~~~a~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~-~~~~~~~~~~~-~~~------------~~--~~~  312 (360)
T TIGR00858       253 VAAAALAALELI--QEEPWRREKLLALIARLRAGLEA-L-GFTLM-PSCTPIVPVII-GDN------------AS--ALA  312 (360)
T ss_pred             HHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHH-c-CCccC-CCCCCEEEEEe-CCH------------HH--HHH
Confidence            122333344332  22356778899999999999998 4 67764 44444444432 211            00  245


Q ss_pred             HHHHHHhcccEEEeeeee---CCcccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        428 LKGRMMQAGTMMVGYQPL---NDLPNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       428 i~~~l~~~g~~~~~~~~~---~~~~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                      +.++|.++|+.+......   .+ .+++|++ ++..++++|+++++++|+
T Consensus       313 ~~~~l~~~gI~v~~~~~~~~~~~-~~~iRis-~~~~~~~~~i~~~l~~l~  360 (360)
T TIGR00858       313 LAEELQQQGIFVGAIRPPTVPAG-TSRLRLT-LSAAHTPGDIDRLAEALK  360 (360)
T ss_pred             HHHHHHHCCeeEeeeCCCCCCCC-CceEEEE-EcCCCCHHHHHHHHHhhC
Confidence            778888888554332111   12 4689999 888899999999999874

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.88  E-value=8.7e-20  Score=180.77  Aligned_cols=325  Identities=13%  Similarity=0.105  Sum_probs=206.1

Q ss_pred             HHHHHHHHcCc---CCcchhcChhhHHHHHHHHHHHHHHhC--CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCC
Q psy12303         89 AGEWLIATANT---NMFTYEIAPVFILMETVVLEKMRQIIG--WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLS  163 (480)
Q Consensus        89 ~~~~l~~~~~~---~~~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~  163 (480)
                      +.+.+....+.   +...|....+...+.+.+.+++....+  +++.++++|+|+++++..++.....            
T Consensus        51 v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~------------  118 (394)
T PRK06836         51 VKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILN------------  118 (394)
T ss_pred             HHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhcC------------
Confidence            33555444332   133454445566677777777766554  4677899999999999888877643            


Q ss_pred             ccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCC-CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC
Q psy12303        164 AIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKR-GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP  242 (480)
Q Consensus       164 ~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~-~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~  242 (480)
                        ||+ .|+++.++|..+...++..|+   +++.+|.+++ +.+|+++|+++++++      +++|++++++||||.+.|
T Consensus       119 --~gd-~Vli~~p~~~~~~~~~~~~g~---~v~~v~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~NPtG~~~~  186 (394)
T PRK06836        119 --PGD-EVIVFAPYFVEYRFYVDNHGG---KLVVVPTDTDTFQPDLDALEAAITPK------TKAVIINSPNNPTGVVYS  186 (394)
T ss_pred             --CCC-EEEEcCCCCccHHHHHHHcCC---EEEEEecCCccCcCCHHHHHhhcCcC------ceEEEEeCCCCCCCcCCC
Confidence              445 788888999999888888888   8899998776 789999999999764      889999999999999977


Q ss_pred             ---hHHHHHHHHH------cCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCC-cccceEEEEeCchhh
Q psy12303        243 ---IEEIADICQK------YNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGT-LLQCSTIHFKQDGLL  312 (480)
Q Consensus       243 ---l~~I~~i~~~------~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~~~  312 (480)
                         +++|+++|++      ||+++++|++|............ ..... .-.+++.|++|.++. +.++|+++..+. ..
T Consensus       187 ~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~-~~~i~~~S~SK~~~~pGlRiG~~~~~~~-~~  263 (394)
T PRK06836        187 EETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPY-IFKYY-DNSIVVYSFSKSLSLPGERIGYIAVNPE-ME  263 (394)
T ss_pred             HHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCC-hHHcc-CcEEEEecchhhccCcceeeEEEecCHH-Hh
Confidence               6777777888      89999999999876432111111 12222 235777899999984 468899887543 21


Q ss_pred             HhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        313 ISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       313 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      +... ...........       .+      ......+...+....+.. .  ...++..+..+.+.+.|++ . |+++.
T Consensus       264 ~~~~-~~~~~~~~~~~-------~~------~~~~~~~~q~~~~~~l~~-~--~~~~~~~~~r~~l~~~L~~-~-g~~~~  324 (394)
T PRK06836        264 DADD-LVAALVFANRI-------LG------FVNAPALMQRVVAKCLDA-T--VDVSIYKRNRDLLYDGLTE-L-GFECV  324 (394)
T ss_pred             hhHH-HHHHHHHHhhc-------cc------cccCCHHHHHHHHHHhCC-h--HHHHHHHHHHHHHHHHHHh-C-CCEee
Confidence            1000 00000000000       00      000111222222222211 1  1234556677888888888 4 77764


Q ss_pred             cCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHH
Q psy12303        393 LEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTE  472 (480)
Q Consensus       393 ~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~  472 (480)
                       +|..+.+.|.-.|. ..              ..++.+.|.+.|+.+.....+.. .+++|+++.   .++++++..++.
T Consensus       325 -~~~gg~~~~~~~~~-~~--------------~~~~~~~l~~~gv~v~~g~~f~~-~~~iRi~~~---~~~~~~~~~i~~  384 (394)
T PRK06836        325 -KPQGAFYLFPKSPE-ED--------------DVAFCEKAKKHNLLLVPGSGFGC-PGYFRLSYC---VDTETIERSLPA  384 (394)
T ss_pred             -cCCceEEEEEeCCC-CC--------------HHHHHHHHHhCCEEEECchhcCC-CCeEEEEec---CCHHHHHHHHHH
Confidence             56666665543322 11              13456777777765544333322 579999953   479999999999


Q ss_pred             HHHhhcc
Q psy12303        473 MDRLGHD  479 (480)
Q Consensus       473 l~~~~~~  479 (480)
                      |++++++
T Consensus       385 l~~~l~~  391 (394)
T PRK06836        385 FEKLAKE  391 (394)
T ss_pred             HHHHHHH
Confidence            9988754

>PRK09265 aminotransferase AlaT; Validated

Probab=99.88  E-value=6.8e-20  Score=182.27  Aligned_cols=319  Identities=13%  Similarity=0.077  Sum_probs=199.1

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHh--CCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCch
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQII--GWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHY  179 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~--g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~  179 (480)
                      ..|....+..++.+.+.+++....  ++++.++++|+|+++++..++.+..+              ||+ .|+++.++|+
T Consensus        66 ~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~--------------~gd-~Vlv~~p~y~  130 (404)
T PRK09265         66 QGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLN--------------NGD-EVLVPAPDYP  130 (404)
T ss_pred             CCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhCC--------------CCC-EEEEeCCCCc
Confidence            345444444556555555553321  56778899999999999888876643              556 7888999999


Q ss_pred             hHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcC
Q psy12303        180 SVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYN  254 (480)
Q Consensus       180 s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~  254 (480)
                      .+..++...|.   +++.++.+.  ++.+|++++++++++.      +++|++++|+||||.+.+   +++|.++|+++|
T Consensus       131 ~~~~~~~~~g~---~~v~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~  201 (404)
T PRK09265        131 LWTAAVSLSGG---KPVHYLCDEEAGWFPDLDDIRSKITPR------TKAIVIINPNNPTGAVYSKELLEEIVEIARQHN  201 (404)
T ss_pred             ChHHHHHHcCC---EEEEEecccccCCCCCHHHHHHhcccc------ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCC
Confidence            99999988887   677777653  4679999999988654      889999999999999988   889999999999


Q ss_pred             cEEEeeccccccccccccccCcccCCC-CCCcc-ceeCccccCCC-cccceEEEEe-CchhhHhhhcCCccccccccccc
Q psy12303        255 MWLHVDAAWGGGLLLSKKYRHPRLTGI-ERADS-VTWNPHKLMGT-LLQCSTIHFK-QDGLLISCNQMSAEYLFMQDKLY  330 (480)
Q Consensus       255 ~~l~vD~a~~~~~~~~~~~~~~~~~~~-~~~D~-~~~s~hK~~~~-p~~~g~~~~~-~~~~~~~~~~~~~~~l~~~~~~~  330 (480)
                      +++++|++|+..........  .+... +.... +..|+.|.++. +..+|+++.. +........... ..+....   
T Consensus       202 ~~ii~De~y~~~~~~~~~~~--~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~-~~~~~~~---  275 (404)
T PRK09265        202 LIIFADEIYDKILYDGAVHI--SIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGL-DMLASMR---  275 (404)
T ss_pred             CEEEEehhhhhccCCCCCcC--CHHHcCCCceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHH-HHHhccc---
Confidence            99999999987643211110  11111 12223 34678999954 4678999864 332111110000 0000000   


Q ss_pred             CcccCCCCccccCCCCCCchHHHHHHHHhc-HHHHHHH---HHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeec
Q psy12303        331 DVRYDTGDKVIQCGRHNDIFKLWLQWRAKG-DEGFEKQ---IDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLP  406 (480)
Q Consensus       331 ~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g-~~~~~~~---~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~  406 (480)
                              +   +   .+.+...+....++ .+.+.+.   .++..+.++.+.+.|++ .+++++ .+|..+.++|...+
T Consensus       276 --------~---~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~-~~~~~~-~~p~~g~~l~~~~~  339 (404)
T PRK09265        276 --------L---C---ANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNA-IPGVSC-VKPKGALYAFPKLD  339 (404)
T ss_pred             --------c---C---CCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcc-cCCCcceEEEEEec
Confidence                    0   0   11222333333332 1222222   24566678888899988 788876 46777777765443


Q ss_pred             CccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC-CcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        407 TRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN-DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       407 ~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~-~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      ....+....         ...+...+.+.|+.+.....+. ...+++|+++ .  .++++++..+++|+++++
T Consensus       340 ~~~~~~~~~---------~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~-~--~~~e~l~~~l~rl~~~l~  400 (404)
T PRK09265        340 PKVYPIHDD---------EQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVT-L--PRVDDLEEAIGRIGRFLS  400 (404)
T ss_pred             ccccCCCCH---------HHHHHHHHHhCCEEEECchhhCCCCCCeEEEEe-C--CCHHHHHHHHHHHHHHHH
Confidence            321100000         1234566677775544433322 1257999995 2  579999999999998765

>KOG0257|consensus

Probab=99.88  E-value=1.3e-20  Score=175.00  Aligned_cols=350  Identities=13%  Similarity=0.102  Sum_probs=231.9

Q ss_pred             cccccCCCChHHhHHHHHHHHcCc-CCcchhcChhhHHHHHHHHHHHHHHhCC---CCCCeEECCChhHHHHHHHHHHHH
Q psy12303         76 MNQLSCGLDVVSMAGEWLIATANT-NMFTYEIAPVFILMETVVLEKMRQIIGW---QGGDSILAPGGSISNLYAFLAARH  151 (480)
Q Consensus        76 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~e~~~~~~la~~~g~---~~~~~~~t~ggt~a~~~al~~~~~  151 (480)
                      ++.......+|.++.+.+...... ....|....+..++.+.+++.+++++|.   +.+++.+|.|+.+|+..++++..+
T Consensus        36 LgqGfp~~~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~  115 (420)
T KOG0257|consen   36 LGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLN  115 (420)
T ss_pred             ccCCCCCCCCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcC
Confidence            555545555566666666655443 4566777778889999999999998885   557899999999999999999987


Q ss_pred             hcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCC--------CCCCCCHHHHHHHHHHHHHCCC
Q psy12303        152 KMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD--------KRGRLIPSELERLVLERKAKGD  223 (480)
Q Consensus       152 ~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~--------~~~~~d~~~L~~~i~~~~~~~~  223 (480)
                                    +|| .|++-++.+.++.-...+.|.   ..++||..        +++.+|.+.|+.++.+.     
T Consensus       116 --------------~GD-eVii~eP~fd~Y~~~~~maG~---tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~k-----  172 (420)
T KOG0257|consen  116 --------------PGD-EVIVFEPFFDCYIPQVVMAGG---TPVFVPLKPKEGNVSSSDWTLDPEELESKITEK-----  172 (420)
T ss_pred             --------------CCC-EEEEecCcchhhhhHHhhcCC---cceeeccccccccccCccccCChHHHHhhccCC-----
Confidence                          556 788889999999999999987   55666655        46899999999999987     


Q ss_pred             ccEEEEeccCCCccccccC---hHHHHHHHHHcCcEEEeecccccccccccc-ccCcccCCCCCCccceeCccccCCCc-
Q psy12303        224 IPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKK-YRHPRLTGIERADSVTWNPHKLMGTL-  298 (480)
Q Consensus       224 ~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~-~~~~~~~~~~~~D~~~~s~hK~~~~p-  298 (480)
                       |++|++++|+||+|.+.+   |++|+++|++||++++.|++|......... .+.-.++|+...-+-+.|+.|.++.. 
T Consensus       173 -Tk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TG  251 (420)
T KOG0257|consen  173 -TKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTG  251 (420)
T ss_pred             -ccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeee
Confidence             999999999999999965   899999999999999999999887663321 11112366655667788999999854 


Q ss_pred             ccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC-CchH--HHHHHH--Hhc-HHHHHHHHHHHH
Q psy12303        299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN-DIFK--LWLQWR--AKG-DEGFEKQIDRLM  372 (480)
Q Consensus       299 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~-~~l~--~~~~l~--~~g-~~~~~~~~~~~~  372 (480)
                      ...|+++. ++.+............                 +.|...+ .+.+  ....+.  .-+ .....++.+..+
T Consensus       252 WrlGW~ig-p~~L~~~~~~vh~~~~-----------------~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~  313 (420)
T KOG0257|consen  252 WRLGWAIG-PKHLYSALFPVHQNFV-----------------FTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYK  313 (420)
T ss_pred             eeeeeeec-hHHhhhhHHHHhhccc-----------------cccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHH
Confidence            56899886 6555544332211111                 1122222 1111  111111  111 234455889999


Q ss_pred             HHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccE-EEeeeeeCCc---
Q psy12303        373 ELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTM-MVGYQPLNDL---  448 (480)
Q Consensus       373 ~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~-~~~~~~~~~~---  448 (480)
                      +.++.|.+.|.+ + |+++. .|+.+.+.+...+..-......+..+.=+  .-.+...+..++.+ ++.++.+...   
T Consensus       314 ~krdil~k~L~~-l-g~~v~-~p~gayyl~adfs~~~~~~~~~~~~~~~~--d~~~~~wl~~~~Gv~~IP~saF~s~~~~  388 (420)
T KOG0257|consen  314 EKRDILAKALEE-L-GLKVT-GPEGAYYLWADFSLAKSWPFFEEILEKPD--DFKFVRWLIKEGGVVVIPPSAFGSREHI  388 (420)
T ss_pred             HHHHHHHHHHHh-c-CCccc-cCCCceEEEEeccccccCCcchhhccCCC--ceeeehhhhccCcEEEeCchhcCCchhh
Confidence            999999999999 5 99985 56666666544331100000000000000  01234555555443 4444333211   


Q ss_pred             ---ccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        449 ---PNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       449 ---~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                         .+.+|+++   .-+++.++..++.+++
T Consensus       389 ~~~~~~~r~~~---~k~~~~L~~a~e~l~~  415 (420)
T KOG0257|consen  389 KVAERLVRFCF---CKADETLRKAIERLKK  415 (420)
T ss_pred             HHHHHHHHHHH---HhhHHHHHHHHHHHhh
Confidence               34677773   3467778887777763

>PRK06855 aminotransferase; Validated

Probab=99.88  E-value=1e-19  Score=181.92  Aligned_cols=342  Identities=13%  Similarity=0.043  Sum_probs=212.3

Q ss_pred             hHHHHHHHHc-CcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCc
Q psy12303         88 MAGEWLIATA-NTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSA  164 (480)
Q Consensus        88 ~~~~~l~~~~-~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~  164 (480)
                      .+.+.+...+ +.....|....+..++.+.+.+|+.+..|.  +++++++|+|+++|+..++. +.+             
T Consensus        52 ~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~-l~~-------------  117 (433)
T PRK06855         52 WMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG-LLR-------------  117 (433)
T ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH-hcC-------------
Confidence            3444444433 233345666667788888889999887664  56789999999999888764 332             


Q ss_pred             cCCceEEEecCCCchhHHHHH-HHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc
Q psy12303        165 IKGQLVMFTSDQCHYSVRSCA-AVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD  241 (480)
Q Consensus       165 ~~g~~~vl~~~~~h~s~~~~~-~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~  241 (480)
                       ||+ .|++..++|+.+..+. ...|.   +++.+|+++  ++.+|+++|+++++..    .+++++++++|+||||.+.
T Consensus       118 -~Gd-~Vlv~~P~Y~~~~~~~~~~~g~---~~v~v~~~~~~~~~~d~~~l~~~~~~~----~~~~~i~l~~P~NPTG~~~  188 (433)
T PRK06855        118 -REA-RVIGPSPAYSTHSSAEAAHAGY---PPVTYRLDPENNWYPDLDDLENKVKYN----PSIAGILLINPDNPTGAVY  188 (433)
T ss_pred             -CCC-eEEEeCCCCchHHHHHHHhcCC---eEEEEecccccCCCCCHHHHHHHHhcC----CCceEEEEECCCCCCCcCC
Confidence             556 7888888988765432 23355   677888764  4679999999998632    1268888899999999997


Q ss_pred             C---hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCC-CccceeCccccCC-CcccceEEEEeC----c---
Q psy12303        242 P---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIER-ADSVTWNPHKLMG-TLLQCSTIHFKQ----D---  309 (480)
Q Consensus       242 ~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~-~D~~~~s~hK~~~-~p~~~g~~~~~~----~---  309 (480)
                      +   +++|.++|++||+|+++|++|+...+....... ...-..+ ..+++.|++|.++ .+..+|++++.+    .   
T Consensus       189 s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~s-l~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~  267 (433)
T PRK06855        189 PKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVP-LSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFK  267 (433)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCC-HHHHcCcCCeEEEecCccccCCCcceEEEEEEeCCchhhHHH
Confidence            7   677888899999999999999876542211110 1110111 2366789999996 557899998732    1   


Q ss_pred             hhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--c--HHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12303        310 GLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--G--DEGFEKQIDRLMELAEYMVKKIKSM  385 (480)
Q Consensus       310 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g--~~~~~~~~~~~~~l~~~l~~~l~~~  385 (480)
                      ..+...........                   +   ...+...+....+  +  .+.+++..+...+..+.+.+.|++ 
T Consensus       268 ~~~~~~~~~~~~~~-------------------~---~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~-  324 (433)
T PRK06855        268 KYINSILNAKMIEV-------------------C---STTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKD-  324 (433)
T ss_pred             HHHHHHHHhhcccc-------------------C---CChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            11111110000000                   0   1122333333333  2  345677777888889999999988 


Q ss_pred             CCCeEEecCCceeEEEEEeecCccC------CCchhhHHHHhhh-------hhHHHHH-HHHhcccEEEeeeeeCCcccE
Q psy12303        386 PDKFYLILEPEMVNVSFWYLPTRVR------NMPHEKRLNILGE-------ITPILKG-RMMQAGTMMVGYQPLNDLPNF  451 (480)
Q Consensus       386 ~~g~~~~~~~~~~~v~f~~~~~~~~------~~~~~~~~~~l~~-------~~~~i~~-~l~~~g~~~~~~~~~~~~~~~  451 (480)
                      .+++.+ .+|+.+.++|.-.|....      ..+..+..+.+..       ...++.. .+.+.|+.+++...+......
T Consensus       325 ~~~~~~-~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~  403 (433)
T PRK06855        325 VPGLKV-NRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNG  403 (433)
T ss_pred             CCCeec-cCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCc
Confidence            778775 578888887765554320      0000000000000       0223443 345667555444333222356


Q ss_pred             EEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        452 FRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       452 ~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +|+++.+  .++++|++.+++|.+++++
T Consensus       404 ~Rls~~~--~~~~~i~~~~~~l~~~~~~  429 (433)
T PRK06855        404 FRVTLLE--RDEEKFEWIYQTLAEKIEE  429 (433)
T ss_pred             eEEEECC--CcHHHHHHHHHHHHHHHHH
Confidence            9999654  4699999999999987753

>PRK09148 aminotransferase; Validated

Probab=99.88  E-value=1e-19  Score=180.76  Aligned_cols=316  Identities=10%  Similarity=0.048  Sum_probs=205.1

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHhCC--CCC-CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCc
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQIIGW--QGG-DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH  178 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~g~--~~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h  178 (480)
                      ..|....+..++.+.+++++.+.+|.  ++. ++++|+|+++++..++.+...              ||+ .|+++.++|
T Consensus        62 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~--------------~gd-~Vl~~~P~y  126 (405)
T PRK09148         62 HRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITA--------------PGD-VILCPNPSY  126 (405)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhcC--------------CCC-EEEEcCCCC
Confidence            45555556678888888888887775  455 799999999999988887754              556 788889999


Q ss_pred             hhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccCh---HHHHHHHHHcCc
Q psy12303        179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPI---EEIADICQKYNM  255 (480)
Q Consensus       179 ~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l---~~I~~i~~~~~~  255 (480)
                      +.+...+...|.   +++.+|.+.++. ++++++++++...   .++++|++++|+||||.+.+.   ++|.++|++||+
T Consensus       127 ~~~~~~~~~~g~---~v~~v~~~~~~~-~~~~l~~~~~~~~---~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~  199 (405)
T PRK09148        127 PIHAFGFIMAGG---VIRSVPAEPDEE-FFPALERAVRHSI---PKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDI  199 (405)
T ss_pred             cccHHHHHhcCC---EEEEEeCCCCCC-CccCHHHHHhhcc---ccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCe
Confidence            999888888887   888999875432 3455666554321   238899999999999999875   678889999999


Q ss_pred             EEEeeccccccccccccccC-cccCCCCCCccceeCccccCCC-cccceEEEEeCchhhHhhhcCCcccccccccccCcc
Q psy12303        256 WLHVDAAWGGGLLLSKKYRH-PRLTGIERADSVTWNPHKLMGT-LLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVR  333 (480)
Q Consensus       256 ~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  333 (480)
                      ++++|++|+........... ..+.+..+..+++.|++|.++. +..+|+++. ++..+...... ..+....       
T Consensus       200 ~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~-~~~~i~~l~~~-~~~~~~~-------  270 (405)
T PRK09148        200 IILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVG-NERLIAALTRV-KSYLDYG-------  270 (405)
T ss_pred             EEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeC-CHHHHHHHHHH-HHHhccC-------
Confidence            99999999876542111110 0111111233457899999984 467899885 55554433211 1111000       


Q ss_pred             cCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCC
Q psy12303        334 YDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRN  411 (480)
Q Consensus       334 ~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~  411 (480)
                                   ...+...++...+  +.+.+++..+...+..+++.+.|++ . ++.+ ..|..++++|.-.|.....
T Consensus       271 -------------~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~-~-~~~~-~~p~~g~f~~~~l~~~~~~  334 (405)
T PRK09148        271 -------------AFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGR-A-GWDI-PPPAASMFAWAPIPEAFRH  334 (405)
T ss_pred             -------------CChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-c-CCcc-CCCCeeEEEEEECCCccCC
Confidence                         1112222222323  3455677777888889999999998 4 7764 3577777666544432211


Q ss_pred             CchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        412 MPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       412 ~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .+           ..++...+. +.|+.+.....+.. ..+++|+++.   .+.+++++.++.|.++++
T Consensus       335 ~~-----------~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~---~~~~~l~~al~~l~~~l~  389 (405)
T PRK09148        335 LG-----------SLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV---ENEQRIRQAARNIKRFLS  389 (405)
T ss_pred             CC-----------HHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec---CCHHHHHHHHHHHHHHHH
Confidence            10           124556555 56754444322221 1479999943   468998888888887664

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.88  E-value=1.2e-20  Score=185.36  Aligned_cols=312  Identities=16%  Similarity=0.184  Sum_probs=207.5

Q ss_pred             CcchhcChhhHHHHHHHHHHHHHHhCC--CCC-CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCC
Q psy12303        101 MFTYEIAPVFILMETVVLEKMRQIIGW--QGG-DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQC  177 (480)
Q Consensus       101 ~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~  177 (480)
                      ...|....+...+++.+.+++.+--|.  ++. ++++++|+.+++..++.+.+..             +|+ .|+++.+.
T Consensus        37 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~~-------------~~~-~vlv~~P~  102 (363)
T PF00155_consen   37 FLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKIN-------------PGD-TVLVPDPC  102 (363)
T ss_dssp             CTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHSS-------------TTS-EEEEEESS
T ss_pred             cccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhccccc-------------ccc-cceecCCc
Confidence            345666666777777777776654444  445 5666666555555555444221             335 78999999


Q ss_pred             chhHHHHHHHcCCCCCCeEEeeCC--CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHH---HHHHH
Q psy12303        178 HYSVRSCAAVCGLGTDNCVEVPSD--KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIA---DICQK  252 (480)
Q Consensus       178 h~s~~~~~~~~g~~~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~---~i~~~  252 (480)
                      |+.+...++..|+   +++.+|.+  .++.+|+++|++.+++...++.++.+|++++++||||...+.+++.   ++|++
T Consensus       103 y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~  179 (363)
T PF00155_consen  103 YPSYIEAARLLGA---EVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELARE  179 (363)
T ss_dssp             STHHHHHHHHTTS---EEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHH
T ss_pred             cccccccccccCc---eeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcc
Confidence            9999999999998   78888864  5789999999999998655544478999999999999997755554   55999


Q ss_pred             cCcEEEeeccccccccccccc-c-CcccCCCCCC-ccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCccccccccc
Q psy12303        253 YNMWLHVDAAWGGGLLLSKKY-R-HPRLTGIERA-DSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDK  328 (480)
Q Consensus       253 ~~~~l~vD~a~~~~~~~~~~~-~-~~~~~~~~~~-D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  328 (480)
                      ||+++++|++|+.+....... . ......  .. .+++.|++|.++.| ...|++++ ++............+....  
T Consensus       180 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~--~~~vi~~~S~SK~~g~~GlRvG~i~~-~~~~~~~l~~~~~~~~~~~--  254 (363)
T PF00155_consen  180 YNIIIIVDEAYSDLIFGDPDFGPIRSLLDE--DDNVIVVGSLSKSFGLPGLRVGYIVA-PPELIERLRRFQRSGLSSS--  254 (363)
T ss_dssp             TTSEEEEEETTTTGBSSSSHTHHHHGHHTT--TSTEEEEEESTTTTTSGGGTEEEEEE-EHHHHHHHHHHHHHTTSSH--
T ss_pred             cccceeeeeceeccccCCCccCcccccccc--cccceeeeeccccccccccccccccc-hhhhhhhhhhccccccccc--
Confidence            999999999999987653211 0 101221  22 47788999998765 57899998 5554443322111111100  


Q ss_pred             ccCcccCCCCccccCCCCCCchHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeec
Q psy12303        329 LYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG--DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLP  406 (480)
Q Consensus       329 ~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g--~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~  406 (480)
                                        .....+...+...+  .+.+++..++..++++++.+.|++ . ++.+..++ .+.++|...+
T Consensus       255 ------------------~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~-~~~~~~~~-~~~~~~~~~~  313 (363)
T PF00155_consen  255 ------------------PMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEE-I-GITVLPPE-AGFFLWVRLD  313 (363)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TSEEEHHS-BSSEEEEEES
T ss_pred             ------------------hhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHH-h-hhheeecc-CccEEEEEcc
Confidence                              01111222222222  226788889999999999999999 5 99987544 6666664322


Q ss_pred             CccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHH
Q psy12303        407 TRVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEM  473 (480)
Q Consensus       407 ~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l  473 (480)
                      ..               ...++.+.|.++ |+.+. ++...+.++++|++ . ...+++++++++++|
T Consensus       314 ~~---------------~~~~l~~~L~~~~gi~v~-pg~~~~~~~~iRi~-~-a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  314 PN---------------DAEELAQELLEEYGILVR-PGSYFGVPGYIRIS-L-ASHSEEDLEEALERL  363 (363)
T ss_dssp             HH---------------HHHHHHHHHHHHHTEEEE-EGGGGTSTTEEEEE-G-GCSCHHHHHHHHHHH
T ss_pred             cc---------------hHHHHHHHHHHhCCEEEE-ecCCCCCCCEEEEE-e-ccCCHHHHHHHHhhC
Confidence            11               134677888888 75544 43444437899999 4 567999999999876

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.88  E-value=1e-19  Score=179.01  Aligned_cols=299  Identities=11%  Similarity=0.031  Sum_probs=194.7

Q ss_pred             hhhHHHHHHHHHHHHHHhC----CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHH
Q psy12303        108 PVFILMETVVLEKMRQIIG----WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS  183 (480)
Q Consensus       108 ~~~~~~e~~~~~~la~~~g----~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~  183 (480)
                      ++..++.+.+++++.+..|    ++++++++|+|+++++..++.+...              +|+..|++..++|+.+..
T Consensus        66 ~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~~--------------~g~~~Vlv~~P~y~~~~~  131 (374)
T PRK02610         66 GGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCL--------------GGEGSILVAEPTFSMYGI  131 (374)
T ss_pred             CchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHcC--------------CCCCeEEEcCCChHHHHH
Confidence            4556666666666665532    5677899999999998877765543              333368899999999999


Q ss_pred             HHHHcCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHH-HcCcEEEeec
Q psy12303        184 CAAVCGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQ-KYNMWLHVDA  261 (480)
Q Consensus       184 ~~~~~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~-~~~~~l~vD~  261 (480)
                      +++..|+   +++.++.++ ++.+|+++|++++++..  ..++++|++++++||||.+.+.+++.++++ .+++++++|+
T Consensus       132 ~~~~~g~---~~~~~~~~~~~~~~d~~~l~~~~~~~~--~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De  206 (374)
T PRK02610        132 LAQTLGI---PVVRVGRDPETFEIDLAAAQSAIEQTQ--NPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDE  206 (374)
T ss_pred             HHHHcCC---EEEEecCCcccCCCCHHHHHHHHHhhc--CCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEec
Confidence            9999998   888888875 47899999999986521  123889999999999999988777666653 2489999999


Q ss_pred             cccccccccccccCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcc
Q psy12303        262 AWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKV  340 (480)
Q Consensus       262 a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  340 (480)
                      +|..+.....   .+.+... .--+++.|++|.++ .+..+|+++. ++.+.+........|.                 
T Consensus       207 ~Y~~~~~~~~---~~~~~~~-~~~ivi~SfSK~~g~~GlRiG~~v~-~~~l~~~l~~~~~~~~-----------------  264 (374)
T PRK02610        207 AYFEFSQTTL---VGELAQH-PNWVILRTFSKAFRLAAHRVGYAIG-HPELIAVLEKVRLPYN-----------------  264 (374)
T ss_pred             cccccCccch---HHHHhcC-CCEEEEEecchhccCcccceeeeec-CHHHHHHHHHhcCCCC-----------------
Confidence            9986532110   0011111 11255779999995 4478999885 5555544332211111                 


Q ss_pred             ccCCCCCCchHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHH
Q psy12303        341 IQCGRHNDIFKLWLQWRAKG-DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLN  419 (480)
Q Consensus       341 ~~~~r~~~~l~~~~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~  419 (480)
                            ...+...++...++ .+.+.+.+++..+.++.+.+.|++ ++++.+.  |..+.++|...+....         
T Consensus       265 ------~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~--p~~g~f~~~~l~~~~~---------  326 (374)
T PRK02610        265 ------LPSFSQLAAQLALEHRQELLAAIPEILQERDRLYQALQE-LPQLRVW--PSAANFLYLRLSQDAA---------  326 (374)
T ss_pred             ------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh-CCCcEeC--CCcceEEEEeCCCCCC---------
Confidence                  11222222222222 233444445555567778888888 7788753  5556655543332211         


Q ss_pred             HhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        420 ILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       420 ~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                           ..++.+.|.+.|+.+..     . .+++|+++.    +.+++++++++|++++++|
T Consensus       327 -----~~~~~~~l~~~gi~v~~-----~-~~~lRls~~----~~~~~~~~l~~l~~~l~~~  372 (374)
T PRK02610        327 -----LAALHQALKAQGTLVRH-----T-GGGLRITIG----TPEENQRTLERLQAALTQL  372 (374)
T ss_pred             -----HHHHHHHHHHCCEEEEe-----C-CCeEEEeCC----CHHHHHHHHHHHHHHHhhc
Confidence                 23566777788854432     2 468999954    3578899999999887654

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.88  E-value=3.8e-20  Score=173.39  Aligned_cols=298  Identities=15%  Similarity=0.145  Sum_probs=201.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEe-cCCCchhHHHHHHHcCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFT-SDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~-~~~~h~s~~~~~~~~g~  190 (480)
                      +...++.+.+++..+ ..+.++|++||||||..|++.||.+..          .|++..|+. ....|.-...+...-|-
T Consensus        84 ~~~~~la~~L~~~s~-~~d~vff~NSGaEA~EaAiKlARk~~~----------~~~k~~Iia~~nsFHGRT~galS~t~~  152 (404)
T COG4992          84 EPQAELAEKLVELSP-FADRVFFCNSGAEANEAALKLARKYTG----------DPEKSKIIAFENSFHGRTLGALSATGQ  152 (404)
T ss_pred             hHHHHHHHHHHhhCc-cccEEEEcCCcHHHHHHHHHHHHHHcC----------CCCCcEEEEEcCCcCCccceeeeccCC
Confidence            445567788888887 345699999999999999999998632          122224444 44445543333333221


Q ss_pred             -------C--CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEE
Q psy12303        191 -------G--TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWL  257 (480)
Q Consensus       191 -------~--~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l  257 (480)
                             +  ...+..+|.+     |+++++++|+++      |.+|++...+-..|.+.+    ++++.++|++||+++
T Consensus       153 ~ky~~~F~Pl~~g~~~vpfn-----Di~al~~ai~~~------taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LL  221 (404)
T COG4992         153 PKYRKGFGPLLPGFRHVPFN-----DIEALEAAIDED------TAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALL  221 (404)
T ss_pred             hhhccCCCCCCCCceecCCC-----CHHHHHHHhccC------eEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEE
Confidence                   1  1245667776     999999999996      999999999999998865    899999999999999


Q ss_pred             EeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCC
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  337 (480)
                      |.|++|.|.......+.+ ...++ ..|+++  .-|.++++++.|.++++ +.......                   +|
T Consensus       222 I~DEVQtG~GRTGk~fA~-e~~gV-~PDI~t--laK~LgGG~PigA~la~-~~~~~~~~-------------------~G  277 (404)
T COG4992         222 ILDEVQTGLGRTGKLFAY-EHYGV-EPDILT--LAKALGGGFPIGAMLAT-EEIASAFT-------------------PG  277 (404)
T ss_pred             EEeccccCCCccchHHHH-HHhCC-CCCEEE--eeccccCCccceeeEEc-hhhhhcCC-------------------CC
Confidence            999999999887777666 66677 799999  66999999999999987 33222110                   11


Q ss_pred             CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC-CCeEEecCCc--eeEEEEEeecCccCCCch
Q psy12303        338 DKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP-DKFYLILEPE--MVNVSFWYLPTRVRNMPH  414 (480)
Q Consensus       338 ~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~-~g~~~~~~~~--~~~v~f~~~~~~~~~~~~  414 (480)
                      .++  .+-..+.+++..+...+..-.-++..++..++.++|.+.|++ + ..+.++.+..  +-++-+.+.+..      
T Consensus       278 ~Hg--STfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~-l~~~~~~v~~vRG~GLmiGiel~~~~------  348 (404)
T COG4992         278 DHG--STFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRLRE-LKRRYPLVKEVRGRGLMIGIELKEPY------  348 (404)
T ss_pred             ccc--CCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHH-HhhcCCceeeeecceeEEEEEecCcc------
Confidence            111  011123444444443332222244567777788888888877 3 2233332222  222223222211      


Q ss_pred             hhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        415 EKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       415 ~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                               ...++.+.+.++|.++...    + .+++|+. +....+++||+..++++++.++.
T Consensus       349 ---------~a~~~~~~~~~~gvL~~~a----~-~~ViR~~-PpL~i~~eei~~~~~~l~~~l~~  398 (404)
T COG4992         349 ---------RARDIVRALREEGVLVLPA----G-PNVIRFL-PPLVITEEEIDEALDALERALAA  398 (404)
T ss_pred             ---------cHHHHHHHHHHCCeEEecC----C-CCeEEec-CCccCCHHHHHHHHHHHHHHHHH
Confidence                     0356788899999655443    2 5799999 99999999999999999988753

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.88  E-value=8.6e-20  Score=178.60  Aligned_cols=311  Identities=13%  Similarity=0.059  Sum_probs=199.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        110 FILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .+.+.+++.+.+++++|.+.  .+++++|..||+.++.++..... -....+.+....+..|+.....|.|+..++++.+
T Consensus       145 ~~~~h~~LE~~LA~f~g~e~--all~sSGy~AN~~~i~aL~~~~~-~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~  221 (476)
T PLN02955        145 YTTYHRLLESSLADLKKKED--CLVCPTGFAANMAAMVAIGSVAS-LLAASGKPLKNEKVAIFSDALNHASIIDGVRLAE  221 (476)
T ss_pred             ChHHHHHHHHHHHHHHCCCc--EEEECChHHHHHHHHHHHhhccc-cccccccccCCCCcEEEEeccchHHHHHHHHhcc
Confidence            34555667777999999976  89999999999999987632100 0000000000013378999999999999999884


Q ss_pred             CC-CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccc
Q psy12303        190 LG-TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLL  268 (480)
Q Consensus       190 ~~-~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~  268 (480)
                      .. ..++..++.+     |+++|+++++....   ..++|++....++.|.+.|+++|.++|++||+++++|+||+.+.+
T Consensus       222 ~~~~a~~~~f~HN-----D~~~Le~~L~~~~~---~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~  293 (476)
T PLN02955        222 RQGNVEVFVYRHC-----DMYHLNSLLSSCKM---KRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVC  293 (476)
T ss_pred             ccCCceEEEeCCC-----CHHHHHHHHHhCCC---CceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCcee
Confidence            31 2267777776     99999999976422   257888999999999999999999999999999999999998776


Q ss_pred             ccccccCcccCCC-CCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC
Q psy12303        269 LSKKYRHPRLTGI-ERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN  347 (480)
Q Consensus       269 ~~~~~~~~~~~~~-~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~  347 (480)
                      --.........++ ...|+++.++.|.++..  .|+ ++.++...+........|++.....                ..
T Consensus       294 G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~--GGf-i~gs~~~~~~l~~~~~~~ifStalp----------------p~  354 (476)
T PLN02955        294 GENGGGVAEEFNCEADVDLCVGTLSKAAGCH--GGF-IACSKKWKQLIQSRGRSFIFSTAIP----------------VP  354 (476)
T ss_pred             cCCCCcHHHHhCCCCCCcEEEEeCccchhcc--Cce-eecHHHHHHHHHHhCCCCeeccccc----------------HH
Confidence            2211000011122 36789999999998852  244 4455555555544455555443110                01


Q ss_pred             CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHH
Q psy12303        348 DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPI  427 (480)
Q Consensus       348 ~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~  427 (480)
                      .+.++.+++..+-.  -..+.++.+++.++|.+.     .|+.+    ...++.+.. +..              .....
T Consensus       355 ~aaa~laal~l~~~--~~~~r~~L~~n~~~fr~~-----~G~~~----~sPI~pI~i-g~~--------------~~a~~  408 (476)
T PLN02955        355 MAAAAYAAVVVARK--EKWRRKAIWERVKEFKAL-----SGVDI----SSPIISLVV-GNQ--------------EKALK  408 (476)
T ss_pred             HHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHh-----cCCCC----CCCEEEEEe-CCH--------------HHHHH
Confidence            12223333333211  134567778888888873     24432    133333322 111              01245


Q ss_pred             HHHHHHhcccEEEe---eeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        428 LKGRMMQAGTMMVG---YQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       428 i~~~l~~~g~~~~~---~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      +.++|.++|..+..   |++..+ ...+|++ .+..+|++||++++++|.++..
T Consensus       409 ~~~~L~~~Gi~v~~i~yPtVP~g-~~rLRi~-lsA~Ht~edId~lv~~L~~~~~  460 (476)
T PLN02955        409 ASRYLLKSGFHVMAIRPPTVPPN-SCRLRVT-LSAAHTTEDVKKLITALSSCLD  460 (476)
T ss_pred             HHHHHHHCCCEEEEECCCCCCCC-CceEEEe-eCCCCCHHHHHHHHHHHHHHHh
Confidence            78899999955332   222233 4679999 8899999999999999988654

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.87  E-value=7.1e-20  Score=179.88  Aligned_cols=317  Identities=15%  Similarity=0.092  Sum_probs=199.0

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHH
Q psy12303        107 APVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAA  186 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~  186 (480)
                      +|...++|+    .+++++|.+.  +++++|||+|+..++.++.-.             ||+ +|+++..+|.+...++.
T Consensus        32 g~~~~~le~----~la~~~g~~~--~v~~~sgt~al~lal~al~~~-------------~Gd-~Viv~~~~~~~~~~~~~   91 (379)
T PRK11658         32 GPKNQALEQ----AFCQLTGNQH--AIAVSSATAGMHITLMALGIG-------------PGD-EVITPSLTWVSTLNMIV   91 (379)
T ss_pred             CHhHHHHHH----HHHHHhCCCe--EEEECCHHHHHHHHHHHcCCC-------------CCC-EEEECCCcHHHHHHHHH
Confidence            454455554    4888888864  889999999999988776211             556 88899999999999998


Q ss_pred             HcCCCCCCeEEeeCCCC-CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccc
Q psy12303        187 VCGLGTDNCVEVPSDKR-GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGG  265 (480)
Q Consensus       187 ~~g~~~~~v~~v~~~~~-~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~  265 (480)
                      ..|+   +++.++++.+ +.+|+++++++++++      +++|+.+   +++|...|+++|.++|+++|+++++|+||+.
T Consensus        92 ~~G~---~~v~vd~~~~~~~~d~~~l~~~i~~~------tkav~~~---~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~  159 (379)
T PRK11658         92 LLGA---TPVMVDVDRDTLMVTPEAIEAAITPR------TKAIIPV---HYAGAPADLDAIRAIGERYGIPVIEDAAHAV  159 (379)
T ss_pred             HcCC---EEEEEecCCCcCCcCHHHHHHhcccC------CeEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECCCcc
Confidence            8888   8899998764 579999999999765      7888744   4589999999999999999999999999997


Q ss_pred             cccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCC-cccccc-ccc-ccCcccCCCCcccc
Q psy12303        266 GLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMS-AEYLFM-QDK-LYDVRYDTGDKVIQ  342 (480)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~-~~~l~~-~~~-~~~~~~~~~~~~~~  342 (480)
                      +.......    . +..+.++++++.+|.+.++ ..|+++.++++....+.... .++... ... .....+.+...  .
T Consensus       160 g~~~~~~~----~-g~~g~~~~Sf~~~K~l~~g-~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~--~  231 (379)
T PRK11658        160 GTYYKGRH----I-GARGTAIFSFHAIKNITCA-EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVL--T  231 (379)
T ss_pred             CCeECCee----c-CCCCCEEEeCCCCCcCccc-CceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceee--c
Confidence            65533211    1 1125578888899988763 34556656666554332111 011000 000 00000011100  1


Q ss_pred             CCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc-----eeEEEEEeecCccCCCchhhH
Q psy12303        343 CGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE-----MVNVSFWYLPTRVRNMPHEKR  417 (480)
Q Consensus       343 ~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~-----~~~v~f~~~~~~~~~~~~~~~  417 (480)
                      .|..+....+-+++.....+++++..++.+++++++.+.|++ ++...+..+..     ...++++..+.. .+.+    
T Consensus       232 ~G~n~~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----  305 (379)
T PRK11658        232 PGYKYNLADINAAIALVQLAKLEALNARRREIAARYLQALAD-LPFQPLSLPAWPHQHAWHLFIIRVDEER-CGIS----  305 (379)
T ss_pred             cccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCccCcCCCCCCceeEEEEEEEECCcc-ccCC----
Confidence            122222333444444444678999999999999999999998 66433322211     123333332111 0111    


Q ss_pred             HHHhhhhhHHHHHHHHhcccEEEe-eee---------------eCC----cccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        418 LNILGEITPILKGRMMQAGTMMVG-YQP---------------LND----LPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       418 ~~~l~~~~~~i~~~l~~~g~~~~~-~~~---------------~~~----~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                             ..++.+.|.+.|+-... +.+               ...    ....+.+. +++..|++|++++++.|+++.
T Consensus       306 -------r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP-~~~~l~~~~~~~i~~~i~~~~  377 (379)
T PRK11658        306 -------RDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLP-LFPDMTDADVDRVITALQQIA  377 (379)
T ss_pred             -------HHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEcc-CCCCCCHHHHHHHHHHHHHHH
Confidence                   23556666666642110 000               000    02445666 688899999999999999864

>PRK10534 L-threonine aldolase; Provisional

Probab=99.87  E-value=2.7e-20  Score=180.58  Aligned_cols=299  Identities=14%  Similarity=0.137  Sum_probs=182.5

Q ss_pred             chhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH
Q psy12303        103 TYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR  182 (480)
Q Consensus       103 ~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~  182 (480)
                      .|...+...++++.    +++++|.++  .++++||++++..++.+...              ||+ .|+++...|.+..
T Consensus        29 ~Y~~~~~~~~L~~~----la~~~g~~~--~~v~~~g~~a~~~~l~~~~~--------------~gd-~vi~~~~~~~~~~   87 (333)
T PRK10534         29 VYGDDPTVNALQDY----AAELSGKEA--ALFLPTGTQANLVALLSHCE--------------RGE-EYIVGQAAHNYLY   87 (333)
T ss_pred             ccCCCHHHHHHHHH----HHHHhCCCe--EEEeCchHHHHHHHHHHhcC--------------CCC-eeEEechhhhhHh
Confidence            34445555565555    788889876  57999999999988876643              556 6677777775433


Q ss_pred             HH--HHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHH---HHHHHHHcCcEE
Q psy12303        183 SC--AAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEE---IADICQKYNMWL  257 (480)
Q Consensus       183 ~~--~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~---I~~i~~~~~~~l  257 (480)
                      .+  +...+  ...++.++.++++.+|+++|+++++++..++.++++|++++++  +|.+.|.++   |.++|++|++++
T Consensus        88 ~~~~~~~~~--~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~~~~~l  163 (333)
T PRK10534         88 EAGGAAVLG--SIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREYLKQAWEFTRERNLAL  163 (333)
T ss_pred             cCCchHHhc--CceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHHHHHHHHHHHHHcCCeE
Confidence            32  23443  1266677777789999999999986532122237888888654  599977654   567889999999


Q ss_pred             EeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCC
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  337 (480)
                      ++|+||..+.........+.+.  ...|.++.+++|.++.+  .|+.++.+++.+.........+.              
T Consensus       164 vvDEA~~~~~~~~~~~~~~~~~--~~~~~~~~s~SK~~~~~--~G~~~~~~~~~i~~~~~~~~~~~--------------  225 (333)
T PRK10534        164 HVDGARIFNAVVAYGCELKEIT--QYCDSFTICLSKGLGTP--VGSLLVGNRDYIKRARRWRKMTG--------------  225 (333)
T ss_pred             EeeHHHHHHHHHHcCCCHHHHH--hcCCEEEEEeEcCCCCc--ccceEEcCHHHHHHHHHHHHHhC--------------
Confidence            9999987432110000000111  13466667899988865  57544567766554432111110              


Q ss_pred             CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhH
Q psy12303        338 DKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKR  417 (480)
Q Consensus       338 ~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~  417 (480)
                           ++-...++.+.+++..+  +...+.+++..+.++++.+.|++ . |+++. +|..+ +++...+.. .       
T Consensus       226 -----~~~~~~~~~~a~~~~~l--~~~~~~~~~~~~~r~~l~~~L~~-~-g~~~~-~~~~n-fv~~~~~~~-~-------  286 (333)
T PRK10534        226 -----GGMRQAGILAAAGLYAL--KHNVARLQEDHDNAAWLAEQLRE-A-GADVM-RQDTN-MLFVRVGEE-Q-------  286 (333)
T ss_pred             -----CchhhHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHh-C-CCccC-CCCce-EEEEECCch-h-------
Confidence                 00001122233333332  22234455566678899999999 4 88874 55544 444322210 0       


Q ss_pred             HHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        418 LNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       418 ~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                             ..++.+.|.++|+++ .+      ...+|++ .+..+|++++++++++|++++.
T Consensus       287 -------~~~~~~~l~~~gi~v-~~------~~~~rl~-~~~r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        287 -------AAALGEYMRERNVLI-NA------SPIVRLV-THLDVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             -------HHHHHHHHHHcCeee-cC------CceEEEE-EEeCCCHHHHHHHHHHHHHHhc
Confidence                   235667788888544 33      1358998 5667899999999999998764

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.87  E-value=6.8e-20  Score=178.76  Aligned_cols=287  Identities=13%  Similarity=0.104  Sum_probs=196.5

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++.++++++.+++++++|+|+++++..++.+. .              + + .|++..+.++.+...++..|.   +
T Consensus        57 ~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~-~--------------~-~-~v~i~~P~y~~~~~~~~~~g~---~  116 (354)
T PRK06358         57 LELRKRIASFEQLDLENVILGNGATELIFNIVKVT-K--------------P-K-KVLILAPTFAEYERALKAFDA---E  116 (354)
T ss_pred             HHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh-C--------------C-C-cEEEecCChHHHHHHHHHcCC---e
Confidence            35677788888998889999999999998887654 2              2 3 577888899999999998888   7


Q ss_pred             eEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCcEEEeeccccccccc
Q psy12303        195 CVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLL  269 (480)
Q Consensus       195 v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~  269 (480)
                      ++.+|.+.  ++.+| +++.+.+.+.      +++|++++|+||||.+.+   +++|.++|++|++++++|++|..+...
T Consensus       117 ~~~~~~~~~~~~~~d-~~~~~~~~~~------~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~  189 (354)
T PRK06358        117 IEYAELTEETNFAAN-EIVLEEIKEE------IDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEE  189 (354)
T ss_pred             eEEEeCccccCCCcc-HHHHHhhccC------CCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCC
Confidence            88898864  35788 5665555432      788889999999999976   788888899999999999999866542


Q ss_pred             cccccCcccCCCCC--CccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC
Q psy12303        270 SKKYRHPRLTGIER--ADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH  346 (480)
Q Consensus       270 ~~~~~~~~~~~~~~--~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~  346 (480)
                      ...  .+.+..++.  --+++.|++|.++ .+..+|++++.++............+-                       
T Consensus       190 ~~~--~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~~~~-----------------------  244 (354)
T PRK06358        190 NET--ISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMREPWS-----------------------  244 (354)
T ss_pred             ccc--hhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCCCCc-----------------------
Confidence            211  111111111  1256679999998 558899998765554443322211110                       


Q ss_pred             CCchHHHHHHHHhcH-HHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhh
Q psy12303        347 NDIFKLWLQWRAKGD-EGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEIT  425 (480)
Q Consensus       347 ~~~l~~~~~l~~~g~-~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~  425 (480)
                      ...+..+++...+.. +.+.+..+...+.++.+.+.|++ .+++.+. +|..+ ++|.-.+.                 .
T Consensus       245 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~-~~~g~-f~~~~~~~-----------------~  304 (354)
T PRK06358        245 INTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSE-FKGIKVY-KPSVN-FIFFKLEK-----------------P  304 (354)
T ss_pred             chHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhc-CCCcEEc-CCcce-EEEEEcCc-----------------h
Confidence            123334444444432 34577778888889999999998 7887764 56555 33322211                 1


Q ss_pred             HHHHHHHHhcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        426 PILKGRMMQAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       426 ~~i~~~l~~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      .++.+.|.+.|+.+.....+.+ ..+++|+++.    ++++.++++++|+++.
T Consensus       305 ~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls~~----~~~~~~~l~~~l~~~~  353 (354)
T PRK06358        305 IDLRKELLKKGILIRSCSNYRGLDENYYRVAVK----SREDNKKLLKALEVIL  353 (354)
T ss_pred             HHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeC----CHHHHHHHHHHHHHHh
Confidence            3566778888855554433322 1479999943    6899999999998764

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.87  E-value=1.6e-19  Score=188.67  Aligned_cols=370  Identities=13%  Similarity=0.037  Sum_probs=242.3

Q ss_pred             CHHHHHHhcCCCCCCCCCCHHHHHHHHHhhccCCccCCCCCccccccCCCChHHhHH-HHHHH--H-cCcCCcchhcChh
Q psy12303         34 HPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAG-EWLIA--T-ANTNMFTYEIAPV  109 (480)
Q Consensus        34 ~p~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~l~~--~-~~~~~~~~~~~~~  109 (480)
                      -|.+++...+..+| ++.+..++++.++++...+...  ..|++...-+...++++. ..+..  + ..-.++..+.+.+
T Consensus        30 iP~~i~~~~~l~lp-~~~sE~e~~~~~~~la~~N~~~--~~fig~G~y~~~~p~~i~r~v~~~p~~~TaytPyQ~EisQG  106 (939)
T TIGR00461        30 VPPNILKRRPLQLE-APSKEYEALAHLKKIASKNHKF--KSYIGMGYYGTILPPVIQRNLLENPGWYTAYTPYQPEISQG  106 (939)
T ss_pred             CCHHHhcCCCCCCC-CCCCHHHHHHHHHHHHhcCCCc--cccCCCCcCCCcCChHHHHHHHhCchhhhcCCCCChhhhhH
Confidence            35667655567788 4678999999998887655432  123333222222333443 33321  1 1112344566777


Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHH---
Q psy12303        110 FILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAA---  186 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~---  186 (480)
                      .-+.-.+...+++++.|++..+..+..++|.+....+++.+..       ++    + +.+|++++..|+.....++   
T Consensus       107 ~Le~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~-------~~----~-~~~vlv~~~~hP~~~~v~~t~a  174 (939)
T TIGR00461       107 RLEALLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVS-------KK----K-ANKFFVAKDLHPQTKSVLHTRA  174 (939)
T ss_pred             HHHHHHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhh-------cC----C-CCEEEECCCCCcchHHHHHHHH
Confidence            7777778899999999999888999999998777555554322       11    1 2379999999999776555   


Q ss_pred             -HcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccc
Q psy12303        187 -VCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGG  265 (480)
Q Consensus       187 -~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~  265 (480)
                       ..|+   +++.+        |+++|++.+  +      +++|++++| |..|.+.|+++|.++++++|.++++++-.-.
T Consensus       175 ~~~g~---~v~~~--------~~~~l~~~~--~------~~~v~~q~P-n~~G~ied~~~i~~~~h~~gal~~~~ad~~a  234 (939)
T TIGR00461       175 KPFGI---EVIVV--------DCSDIKKAV--D------VFGCLLQYP-ATDGSILDYKQLIDALHSHKSLVSVAADLMA  234 (939)
T ss_pred             HhcCc---EEEEE--------cHHHHhhcC--C------EEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechHH
Confidence             4455   66665        444565554  2      788999999 6789999999999999999999999776555


Q ss_pred             cccccccccCcccCCCCCCccceeCccccCC----CcccceEEEEeCchhhHhhhcCCccccccc--cc-----------
Q psy12303        266 GLLLSKKYRHPRLTGIERADSVTWNPHKLMG----TLLQCSTIHFKQDGLLISCNQMSAEYLFMQ--DK-----------  328 (480)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~----~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~--~~-----------  328 (480)
                      ..+..+...+       ++|+++.+.++|+.    ++++.|++.+++. +.+.    .|+-+.+.  +.           
T Consensus       235 l~ll~~Pge~-------GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~-l~r~----lPgrivG~s~D~~G~~~~~l~Lq  302 (939)
T TIGR00461       235 LTLLTPPGHY-------GADIVLGSSQRFGVPMGYGGPHAAFFAVKDE-YNRK----MPGRIVGVSKDALGNTALRLALQ  302 (939)
T ss_pred             hCCcCCHHHc-------CCcEEeeCCCccCCCCCCCCCceeeeeecHh-hHhh----CCCCceeEEecCCCCccceeecc
Confidence            5555555555       99999777777654    1233788887764 3322    22222221  11           


Q ss_pred             --ccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeec
Q psy12303        329 --LYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLP  406 (480)
Q Consensus       329 --~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~  406 (480)
                        +..-+.+-.+.++-.+....++.+.+.+..+|.+|++++.++...++.++.+.|.+  .|++++.++.+..+.+.+..
T Consensus       303 tReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~--~G~~~~~~~fF~~~~v~~~~  380 (939)
T TIGR00461       303 TREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEN--DPHELINKTWFDTLTVKVGN  380 (939)
T ss_pred             cccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh--CCCcccCCCccceEEEEeCC
Confidence              00111111111110000012223344467789999999999999999999999999  89999877666777775410


Q ss_pred             CccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        407 TRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       407 ~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                      ..                ..++.+++.++|+. +..   .. .+.+++| .+..+|++||+.+++.+.
T Consensus       381 ~~----------------~~~i~~~~~~~gi~-l~~---~~-~~~i~~s-~~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       381 GI----------------SSELLKAAEEFNIN-LRA---VD-TTTVGIA-LDETTTKADVENLLKVFD  426 (939)
T ss_pred             CC----------------HHHHHHHHHHCCCe-eee---cC-CCEEEEE-eecCCCHHHHHHHHHHhc
Confidence            11                24678888889855 332   12 3589999 899999999999999984

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.87  E-value=2.7e-19  Score=177.35  Aligned_cols=320  Identities=10%  Similarity=-0.011  Sum_probs=207.7

Q ss_pred             hHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC----CC-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCC
Q psy12303         88 MAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW----QG-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGL  162 (480)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~----~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~  162 (480)
                      .+.+.+..... ....|....+..++.+.+.+++.+.+|.    ++ .++++|+|+++++..++.+..+           
T Consensus        45 ~~~~a~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~-----------  112 (393)
T TIGR03538        45 FVLEALRENLH-GLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVIN-----------  112 (393)
T ss_pred             HHHHHHHHHhh-ccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHcC-----------
Confidence            34455555433 2344554555678888888888887664    44 3689999999999998887764           


Q ss_pred             CccCCce-EEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCC--CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccc
Q psy12303        163 SAIKGQL-VMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKR--GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGA  239 (480)
Q Consensus       163 ~~~~g~~-~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~--~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~  239 (480)
                         ||+. .|+++.++++.+...+...|.   +++.+|++++  +.+|++++++++.+.      +++|++++++||||.
T Consensus       113 ---~gd~~~vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~p~NPtG~  180 (393)
T TIGR03538       113 ---PGQAPLVVMPNPFYQIYEGAALLAGA---EPYFLNCTAENGFLPDFDAVPESVWRR------CQLLFVCSPGNPTGA  180 (393)
T ss_pred             ---CCCcceEEecCCCCcchHHHHHhcCC---eEEEeeccccCCCCCCHHHHHHHHhhc------ceEEEEeCCCCCcCc
Confidence               4452 588899999998888898888   7889998643  578999999988654      889999999999999


Q ss_pred             ccC---hHHHHHHHHHcCcEEEeeccccccccccccccCccc---CCC----CCCccceeCcccc-CCCcccceEEEEeC
Q psy12303        240 FDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRL---TGI----ERADSVTWNPHKL-MGTLLQCSTIHFKQ  308 (480)
Q Consensus       240 ~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~---~~~----~~~D~~~~s~hK~-~~~p~~~g~~~~~~  308 (480)
                      +.+   +++|.++|++||+++++|++|............+..   ...    ..--+++.|++|. +..+..+|+++. +
T Consensus       181 ~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~-~  259 (393)
T TIGR03538       181 VLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAG-D  259 (393)
T ss_pred             ccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEec-C
Confidence            977   788899999999999999999876532110000000   000    0112567799995 555578999875 4


Q ss_pred             chhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12303        309 DGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG-DEGFEKQIDRLMELAEYMVKKIKSMPD  387 (480)
Q Consensus       309 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~~~~  387 (480)
                      +..+....... .+..                    .....+...+++..+. .+.+++..+...+..+.+.+.|++ . 
T Consensus       260 ~~l~~~~~~~~-~~~~--------------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~-~-  316 (393)
T TIGR03538       260 AEILKAFLRYR-TYHG--------------------CAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQ-V-  316 (393)
T ss_pred             HHHHHHHHHHH-Hhhc--------------------cCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh-h-
Confidence            44444332111 0100                    0012223333333332 345666677778888888888887 4 


Q ss_pred             CeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeC-------CcccEEEEecccC
Q psy12303        388 KFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLN-------DLPNFFRNIISSA  459 (480)
Q Consensus       388 g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~-------~~~~~~R~~~~~~  459 (480)
                       +.+ ..|..+.++|.-.+  ..              ..++.+.+.+ .|+.+.....+.       ...+++|+++.. 
T Consensus       317 -~~~-~~p~gg~f~~~~~~--~~--------------~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~-  377 (393)
T TIGR03538       317 -LDL-ELPDAGFYLWPKVP--GD--------------DEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA-  377 (393)
T ss_pred             -Ccc-cCCCeeEEEEEECC--CC--------------HHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC-
Confidence             333 35777777765443  10              1245566654 565443332211       114799999543 


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy12303        460 AVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       460 ~~t~~di~~~~~~l~~~  476 (480)
                        ++++++..+++|+++
T Consensus       378 --~~~~l~~~l~~l~~~  392 (393)
T TIGR03538       378 --PLEECVEAAERIRSF  392 (393)
T ss_pred             --CHHHHHHHHHHHHHh
Confidence              589999999999875

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=9.2e-20  Score=178.42  Aligned_cols=292  Identities=13%  Similarity=0.043  Sum_probs=196.5

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++.+++++|++++++++|+|+++++..++.+...              ||+..|+++.+.+..+...++..|.   +
T Consensus        62 ~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~--------------~g~~~vlv~~p~y~~~~~~~~~~g~---~  124 (364)
T PRK04781         62 PGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCV--------------PGRDAVLVTPPVFGMYAVCARLQNA---P  124 (364)
T ss_pred             HHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcC--------------CCCCeEEEcCCChHHHHHHHHHcCC---E
Confidence            4567778888999888999999999999888876643              4434788888888878888888888   8


Q ss_pred             eEEeeCCC---CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHH--cCcEEEeeccccccccc
Q psy12303        195 CVEVPSDK---RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQK--YNMWLHVDAAWGGGLLL  269 (480)
Q Consensus       195 v~~v~~~~---~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~--~~~~l~vD~a~~~~~~~  269 (480)
                      ++.+|.++   ++.+|++++++.+...     ++++|++++++||||.+.+.+++.++++.  +++++++|++|..+...
T Consensus       125 ~~~v~~~~~~~~~~~d~~~l~~~~~~~-----~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~  199 (364)
T PRK04781        125 LVEVPLVDGADGFHADVPAIVAAALAS-----NAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDV  199 (364)
T ss_pred             EEEEecCCCccCCCcCHHHHHHHHhcc-----CCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCC
Confidence            88999742   2467888886654321     28899999999999999999888888875  47999999999876531


Q ss_pred             cccccCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCC
Q psy12303        270 SKKYRHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHND  348 (480)
Q Consensus       270 ~~~~~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~  348 (480)
                       +.... ..... .--+++.|++|.++ .+..+|+++. +++++.........|-                       ..
T Consensus       200 -~~~~~-~~~~~-~~vi~~~SfSK~~gl~GlRvGy~v~-~~~l~~~l~~~~~~~~-----------------------~~  252 (364)
T PRK04781        200 -PSAVG-LLARY-DNLAVLRTLSKAHALAAARIGSLIA-NAELIAVLRRCQAPYP-----------------------VP  252 (364)
T ss_pred             -cchHH-HHhhC-CCEEEEecChhhcccccceeeeeeC-CHHHHHHHHhccCCCC-----------------------CC
Confidence             11000 11111 11256679999998 5578999885 4555554433222221                       11


Q ss_pred             chHHHHHHHHh--c-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhh
Q psy12303        349 IFKLWLQWRAK--G-DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEIT  425 (480)
Q Consensus       349 ~l~~~~~l~~~--g-~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~  425 (480)
                      .+...++...+  + .+...+.+++..+.++.+.+.|++ ++++..+.++. ++++|...+ .                .
T Consensus       253 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~p~~-g~f~~~~~~-~----------------~  313 (364)
T PRK04781        253 TPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQ-LPGVRRVYPSQ-GNFLLVRFD-D----------------A  313 (364)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCeECCCC-CcEEEEEcC-C----------------H
Confidence            22222222222  2 234556666777888999999998 77875334444 555443222 1                1


Q ss_pred             HHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        426 PILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       426 ~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .++.+.+.+.|+.+.....+.+..+++|+++.    +.++.++++++|+++..
T Consensus       314 ~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris~~----~~~~~~~l~~al~~~~~  362 (364)
T PRK04781        314 EAAFQALLAAGVVVRDQRAAPRLSDALRITLG----TPEQNDRVLAALQRTQA  362 (364)
T ss_pred             HHHHHHHHHCCeEEeeCCCCCCCCCeEEEeCC----CHHHHHHHHHHHHHHHh
Confidence            35667788888665554333333579999943    68999999999988653

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.87  E-value=7.3e-20  Score=175.86  Aligned_cols=373  Identities=18%  Similarity=0.171  Sum_probs=211.0

Q ss_pred             CCHHHHHHhcCCCCCCCCCCHHHHHHHHHhhccCCccCCCCCccccccCCCChHHhHHH-HHH--HHcCc-CCcchhcCh
Q psy12303         33 YHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGE-WLI--ATANT-NMFTYEIAP  108 (480)
Q Consensus        33 ~~p~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~l~--~~~~~-~~~~~~~~~  108 (480)
                      .-|.+++...+.++|+ +.+..++++.++++...+..  ...|++........|+++.+ .++  .++.. .++..+.+.
T Consensus        30 ~IP~~i~~~~~~~lp~-~~sE~e~~r~~~~la~kN~~--~~~fiG~G~y~~~~P~~i~~~i~~~~ef~TaYtPYQpEisQ  106 (429)
T PF02347_consen   30 DIPEEIRLKKPLNLPE-PLSEYELLRHLERLASKNKS--YTSFIGAGSYTHYVPAVIDRNILSRPEFYTAYTPYQPEISQ  106 (429)
T ss_dssp             TS-GGG-SS-----------HHHHHHHHHHHHTTS----TTS---CTTT-----HHHHH-HHCCHHCCCS-STTSGGGBH
T ss_pred             hCCHhhcCCCCCCCCC-CCCHHHHHHHHHHHHhcCCC--CCccccccccCceeChhhcCccccChhhhccCCCCCcHHHH
Confidence            4577777666778884 58999999999998876654  45566666656666777766 443  23332 234456688


Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHc
Q psy12303        109 VFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVC  188 (480)
Q Consensus       109 ~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~  188 (480)
                      +.-+.-.+...+++++.|++..+..+..++|.+-..++++.|...     ++       +.+|+++...|+.....++..
T Consensus       107 G~Lq~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~-----~~-------~~~vlv~~~~hP~~~~v~~t~  174 (429)
T PF02347_consen  107 GRLQALFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATK-----RK-------RNKVLVPESLHPQTRAVLRTY  174 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHT-----T----------EEEEETTS-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcc-----cC-------CcEEEEcCCcChhhHHHHHHh
Confidence            888888899999999999998788999999977776655555421     11       238999999999988866654


Q ss_pred             CC-CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccc
Q psy12303        189 GL-GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGL  267 (480)
Q Consensus       189 g~-~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~  267 (480)
                      .. ...+++.+|.++++..|        ++      .+++|++++| |..|.++++++|.++++++|..+++ ++.-...
T Consensus       175 a~~~g~~iv~~~~~~~~~~d--------~~------~~a~v~vq~P-n~~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL  238 (429)
T PF02347_consen  175 AAPLGIEIVEVPLDEDGTTD--------DD------DTAAVMVQNP-NTFGVFEDIKEIADIAHAAGALVIV-GADPNAL  238 (429)
T ss_dssp             CCHCCEEEEEE-BBTTCSB---------ST------TEEEEEEESS--TTSB--THHHHHHHHHHTT-EEEE-CGGCCGC
T ss_pred             hhhCCeEEEEecccccCCcc--------cc------CeEEEEeecC-CCCceEeeHHHHHHHHHHcCCEEEE-ecCHHHH
Confidence            21 11278888888877776        23      3999999999 5689999999999999999999988 6543322


Q ss_pred             c-ccccccCcccCCCCCCccceeCccccCCCccc-----ceEEEEeCchhhHhhhcCCccccccccc-------------
Q psy12303        268 L-LSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ-----CSTIHFKQDGLLISCNQMSAEYLFMQDK-------------  328 (480)
Q Consensus       268 ~-~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~-----~g~~~~~~~~~~~~~~~~~~~~l~~~~~-------------  328 (480)
                      . ..+...+       ++|+++.+ ||.++.|.+     +|++.+++. +.+    ..|+.+.+...             
T Consensus       239 ~~l~~Pge~-------GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~-l~r----~lPGRiVG~t~D~~G~~~~~ltLq  305 (429)
T PF02347_consen  239 GGLKSPGEY-------GADIVVGE-HQTFGIPMGFGGPGAGFFAVRED-LVR----QLPGRIVGQTKDADGKRAFVLTLQ  305 (429)
T ss_dssp             CTC--GGGG-------T-SEEEEC-CTTTT---CCC-S--EEEEE-GG-GGG----GS-S-EEEEEEBCCCSCCEEEE-G
T ss_pred             hCcCChhhc-------CccEEeeC-CCCCcccCCCCCCCeeeEEEhhh-hhh----hCCCceecccccccccceeeeccc
Confidence            2 2222234       89999655 887777753     577777665 332    23333332111             


Q ss_pred             --ccCcccCCCCccccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEee
Q psy12303        329 --LYDVRYDTGDKVIQCGRH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYL  405 (480)
Q Consensus       329 --~~~~~~~~~~~~~~~~r~-~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~  405 (480)
                        +..-+.+-.+.++ |+.. ..++.++..+..+|.+|+++..++...++.|+.+.|.+ ..++.+ ..+....++....
T Consensus       306 tREQHIrReKAtSNI-ctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~-~~~~~~-~~~~f~e~v~~~~  382 (429)
T PF02347_consen  306 TREQHIRREKATSNI-CTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKK-IYGLPF-DNPFFFEFVVVFS  382 (429)
T ss_dssp             GGTCHHHGCCSTT----SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTBECS-SSSSBSSEEEEES
T ss_pred             cccccccccchhhhh-hhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH-hcCccc-CCCCceeeeeecC
Confidence              1010111111112 2211 23456677788899999999999999999999999999 645544 3444444443322


Q ss_pred             cCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHH
Q psy12303        406 PTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEM  473 (480)
Q Consensus       406 ~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l  473 (480)
                      +.           ...    .++.++....|   +.. .... .+.+-+| +...+|++|||++++++
T Consensus       383 ~~-----------~~~----~~l~~~~~~~g---l~~-~~~~-~~~~li~-~TE~~t~edid~lv~~f  429 (429)
T PF02347_consen  383 KD-----------KEV----EELLKRGIEGG---LNL-RYPD-DGALLIC-VTETRTKEDIDRLVEAF  429 (429)
T ss_dssp             S------------HHH----HHHHHTT-------EEE-GGG--SSEEEEE---TT--HHHHHHHHH--
T ss_pred             Cc-----------HHH----HHHHHHHHhcC---CCc-cccC-CCeEEEE-ccCCCCHHHHHHHHhcC
Confidence            11           001    13555555566   222 2223 3588899 88999999999999864

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>PLN02271 serine hydroxymethyltransferase

Probab=99.87  E-value=8e-20  Score=179.35  Aligned_cols=324  Identities=14%  Similarity=0.090  Sum_probs=202.5

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCC----CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhH
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQG----GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV  181 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~----~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~  181 (480)
                      ......++|....+...++||++.    .++ -.-+||.||+.++.+..+              ||| .|+..+..|..+
T Consensus       188 G~~~iD~iE~la~era~~lF~~~~~~~gaNV-Qp~SGs~AN~aV~~ALl~--------------PGD-~IL~ldl~~GGH  251 (586)
T PLN02271        188 GNQYIDQIERLCCERALAAFGLDSEKWGVNV-QPYSCTSANFAVYTGLLL--------------PGD-RIMGLDSPSGGH  251 (586)
T ss_pred             CChhHHHHHHHHHHHHHHHhCCcccccccce-eeccHHHHHHHHHHHhcC--------------CCC-EEEEecCCCCCc
Confidence            345567899999999999999875    343 334899999999988754              667 677765554443


Q ss_pred             HHH---------HHHcCCCCCCeEEee--CC-CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHH
Q psy12303        182 RSC---------AAVCGLGTDNCVEVP--SD-KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADI  249 (480)
Q Consensus       182 ~~~---------~~~~g~~~~~v~~v~--~~-~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i  249 (480)
                      ...         +...|+   .+..+|  +| +++.+|.+++++.....     +|++|++.+..++  ...|+++|++|
T Consensus       252 lshg~~~~~g~~vs~sG~---~~~~vpY~~d~~~g~IDyd~lek~a~~~-----rPKLII~g~Sayp--r~~D~~~i~eI  321 (586)
T PLN02271        252 MSHGYYTPGGKKVSGASI---FFESLPYKVNPQTGYIDYDKLEEKALDF-----RPKILICGGSSYP--REWDYARFRQI  321 (586)
T ss_pred             hhcccccccccccccccc---eEEEEEcccccccCccCHHHHHHHhhhc-----CCeEEEECchhcc--CcCCHHHHHHH
Confidence            222         233444   344444  65 46899999999855332     2999999766655  66899999999


Q ss_pred             HHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccccc-
Q psy12303        250 CQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDK-  328 (480)
Q Consensus       250 ~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-  328 (480)
                      |+++|+++++|+||..|.+....+.. .   +..+|++++++|||+.+|.| |++++++... .........+-..... 
T Consensus       322 AdevGA~LmvD~AH~aGLIa~g~~~s-P---~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~~-~~~~g~~gs~s~~~~~~  395 (586)
T PLN02271        322 ADKCGAVLMCDMAHISGLVAAKECVN-P---FDYCDIVTSTTHKSLRGPRG-GIIFYRKGPK-LRKQGMLLSHGDDNSHY  395 (586)
T ss_pred             HHHcCCEEEEECcccccccccCcCCC-C---CcCCcEEEeCCcccCCCCCc-eEEEeccccc-ccccCCccccccccccH
Confidence            99999999999999999987765433 1   23789999999999999998 7777765311 1100000000000000 


Q ss_pred             ccCcccCCC-CccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC-ceeEEEEEee
Q psy12303        329 LYDVRYDTG-DKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP-EMVNVSFWYL  405 (480)
Q Consensus       329 ~~~~~~~~~-~~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~-~~~~v~f~~~  405 (480)
                      ......+.. -.++++|... ...++..+++......+.++.++..++++.|.+.|.+  .|++++..- +...+.+...
T Consensus       396 d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~--~G~~vv~ggTdnHlvLvDl~  473 (586)
T PLN02271        396 DFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLR--RKCRLVTGGTDNHLLLWDLT  473 (586)
T ss_pred             HHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH--CCCeEeeCCCCcceeeecCc
Confidence            000000000 0123333333 2344555566554556789999999999999999999  799998643 3344444332


Q ss_pred             cCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCC-----cccEEEEec---ccCCCCHHHHHHHHHHHHHhh
Q psy12303        406 PTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLND-----LPNFFRNII---SSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       406 ~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~-----~~~~~R~~~---~~~~~t~~di~~~~~~l~~~~  477 (480)
                      +..+.              .....+.|-.-|+. +......+     .+..+|+..   ......++|++.+.+.|.+++
T Consensus       474 ~~g~~--------------G~~ae~~Le~~~I~-~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~  538 (586)
T PLN02271        474 TLGLT--------------GKNYEKVCEMCHIT-LNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAA  538 (586)
T ss_pred             ccCCC--------------HHHHHHHHHHcCeE-eccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            22211              12334444445532 22111111     146799883   334556799999888887765


Q ss_pred             c
Q psy12303        478 H  478 (480)
Q Consensus       478 ~  478 (480)
                      +
T Consensus       539 ~  539 (586)
T PLN02271        539 Q  539 (586)
T ss_pred             h
Confidence            4

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.87  E-value=1.5e-19  Score=174.51  Aligned_cols=331  Identities=15%  Similarity=0.055  Sum_probs=196.8

Q ss_pred             HHHHHHHHhhccCCccCCCCCccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeE
Q psy12303         54 QKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSI  133 (480)
Q Consensus        54 ~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~  133 (480)
                      ++.++.+++....+-+..-..|++....+..... ..+.+..+.           +...+.+++.+.+++++|.++.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~ylgl~~~~~~~~~-~~~~~~~~~-----------g~~~~~~~Le~~lA~~~g~~~e~il   75 (346)
T TIGR03576         8 EKALEIIREKISRGGRDSLYDLTGLAGGFKIDEE-DLELLETYV-----------GPAIFEEKVQELGREHLGGPEEKIL   75 (346)
T ss_pred             HHHHHHHHHHHhccCCccccccccCCCChhHHHH-HHHHHHHhc-----------CCHHHHHHHHHHHHHHcCCCcceEE
Confidence            4556666666654433333456665544432222 223343331           2347778888899999999877899


Q ss_pred             ECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEec---CCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHH
Q psy12303        134 LAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTS---DQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSE  210 (480)
Q Consensus       134 ~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~---~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~  210 (480)
                      +++||++||..++.+..+              ||+ .|++.   .+.|.++...++..|.   +++  ..+     ++++
T Consensus        76 v~~gg~~a~~~~~~al~~--------------~gd-~Vli~~~d~p~~~s~~~~~~l~ga---~~~--~~~-----~l~~  130 (346)
T TIGR03576        76 VFNRTSSAILATILALEP--------------PGR-KVVHYLPEKPAHPSIPRSCKLAGA---EYF--ESD-----ELSE  130 (346)
T ss_pred             EECCHHHHHHHHHHHhCC--------------CCC-EEEECCCCCCCchhHHHHHHHcCC---EEe--ccC-----CHHH
Confidence            999999999999988764              556 55532   5799999999999987   432  221     4444


Q ss_pred             HHHHHHHHHHCCCccEEEEeccCCCccccc---cChHHHHHHHHHcCcEEEeecccccccccc-ccccCcccCCCCCCcc
Q psy12303        211 LERLVLERKAKGDIPFFVNCTSGTTVLGAF---DPIEEIADICQKYNMWLHVDAAWGGGLLLS-KKYRHPRLTGIERADS  286 (480)
Q Consensus       211 L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~---~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~-~~~~~~~~~~~~~~D~  286 (480)
                      ++.    .    .++++|+++ +++++|.+   .||++|+++|+++|+|+++|+||+.+.... ....  .. .. ++|+
T Consensus       131 l~~----~----~~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~--~~-~~-~~di  197 (346)
T TIGR03576       131 LKK----I----DGTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPP--AL-DL-GADL  197 (346)
T ss_pred             Hhh----C----cCceEEEEE-CCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCC--HH-Hc-CCcE
Confidence            321    1    126777775 46889998   789999999999999999999999875421 1110  11 11 4689


Q ss_pred             ceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHH
Q psy12303        287 VTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEK  366 (480)
Q Consensus       287 ~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~  366 (480)
                      ++.+++|++.++ ..|+++ .+++.++.......+|...                     .....+++++..+.....+.
T Consensus       198 vv~s~SKalaG~-r~G~v~-~~~~li~~l~~~~~~~~~s---------------------~~~~~~~aa~~aL~~~~~~~  254 (346)
T TIGR03576       198 VVTSTDKLMDGP-RGGLLA-GRKELVDKIKSVGEQFGLE---------------------AQAPLLAAVVRALEEFELSR  254 (346)
T ss_pred             EEeccchhcccc-ceEEEE-eCHHHHHHHHHhhcCcccC---------------------ccHHHHHHHHHHHhhccHHH
Confidence            999999977543 456666 4555655554433333321                     11222333333332111234


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC
Q psy12303        367 QIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN  446 (480)
Q Consensus       367 ~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~  446 (480)
                      +.+...++.+++.+.+.. +   .+. ++..+ +.|.-.+..    +.          .......|.+.|+++++...+.
T Consensus       255 ~~~~l~~r~~~~~~~l~~-~---~~~-~~~~~-f~~~~~~~~----~~----------~~~~~~ll~~~gV~v~~~~~f~  314 (346)
T TIGR03576       255 IRDAFKRKEEVYLRLFDK-L---NVE-RTPTG-FVIKGVEEE----KL----------IEIGLDLLRNYGIITITAVGMP  314 (346)
T ss_pred             HHHHHHHHHHHHHHHHHh-C---CCC-cCCCe-EEEEeCCCC----CH----------HHHHHHHHHhCCEEEeCCcccC
Confidence            455666666666666655 3   222 22333 333222210    00          0233455666776555433333


Q ss_pred             CcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        447 DLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       447 ~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      +..+++|+++....-++.++++++++|++.+
T Consensus       315 ~~~~~vRis~~~~~~~~~~~~~~~~al~~~~  345 (346)
T TIGR03576       315 GASKTLRFDLAAKDAERIGDDYLVEAVKDSL  345 (346)
T ss_pred             CCCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence            3357999996543323348999999998764

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK07908 hypothetical protein; Provisional

Probab=99.87  E-value=1.1e-19  Score=177.35  Aligned_cols=281  Identities=13%  Similarity=0.129  Sum_probs=185.8

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCe
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNC  195 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v  195 (480)
                      ++++++++.+|+++.++++|+|+++++..++. . .              | + .+++..+++......++..|+   ++
T Consensus        62 ~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~-l-~--------------~-~-~viv~~P~y~~~~~~~~~~G~---~i  120 (349)
T PRK07908         62 RARAAVAARHGRTPDEVLLLAGAAEGFALLAR-L-R--------------P-R-RAAVVHPSFTEPEAALRAAGI---PV  120 (349)
T ss_pred             HHHHHHHHHhCcChhhEEECCCHHHHHHHHHh-c-C--------------C-C-eEEEeCCCChHHHHHHHHcCC---EE
Confidence            46677888889988899999999999887775 2 1              3 2 244456778777888888888   88


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccC
Q psy12303        196 VEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH  275 (480)
Q Consensus       196 ~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~  275 (480)
                      +.+|.++++.+|+++++    +.      ++++++++++||||.+.+.++|.++|++ +.++++|++|+.... ...  .
T Consensus       121 ~~v~~~~~~~~d~~~l~----~~------~~~i~l~np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~~~-~~~--~  186 (349)
T PRK07908        121 HRVVLDPPFRLDPAAVP----DD------ADLVVIGNPTNPTSVLHPAEQLLALRRP-GRILVVDEAFADAVP-GEP--E  186 (349)
T ss_pred             EeeccCcccCcChhHhc----cC------CCEEEEcCCCCCCCCCcCHHHHHHHHhc-CCEEEEECcchhhcc-CCc--c
Confidence            89999877888987542    22      7799999999999999999999999974 789999999986431 111  1


Q ss_pred             cccCCCCCCccce-eCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHH
Q psy12303        276 PRLTGIERADSVT-WNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLW  353 (480)
Q Consensus       276 ~~~~~~~~~D~~~-~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~  353 (480)
                       .+...+..+++. .|++|.++ .+..+|+++. ++..++........+.            .+         .....+.
T Consensus       187 -~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~-~~~~~~~~~~~~~~~~------------~~---------~~~~~a~  243 (349)
T PRK07908        187 -SLAGDDLPGVLVLRSLTKTWSLAGLRVGYALG-APDVLARLTRGRAHWP------------VG---------TLQLEAI  243 (349)
T ss_pred             -ccccccCCCEEEEeecccccCCccceeeeeec-CHHHHHHHHhcCCCCC------------cc---------HHHHHHH
Confidence             111111224444 48999887 5577899986 4455544332211110            00         0011111


Q ss_pred             HH-HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHH
Q psy12303        354 LQ-WRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRM  432 (480)
Q Consensus       354 ~~-l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l  432 (480)
                      .. +...+.+.+++..++..++++++.+.|++ . ++++.. |..+.+.+...+.                 ...+.+.|
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~-~~~~~~-p~~g~~~~~~~~~-----------------~~~~~~~l  303 (349)
T PRK07908        244 AACCAPRAVAEAAADAARLAADRAEMVAGLRA-V-GARVVD-PAAAPFVLVRVPD-----------------AELLRKRL  303 (349)
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHHHHHHHHh-C-CcEecc-CCCceEEEEECCc-----------------HHHHHHHH
Confidence            11 11112345677788888899999999999 6 888754 4445544432221                 12456677


Q ss_pred             HhcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        433 MQAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       433 ~~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .++|+.+.....+.+ ..+++|+++    .+++++++++++|+++..
T Consensus       304 ~~~gI~v~~g~~f~~~~~~~vRis~----~~~~~~~~l~~al~~~~~  346 (349)
T PRK07908        304 RERGIAVRRGDTFPGLDPDYLRLAV----RPRAEVPVLVQALAEILK  346 (349)
T ss_pred             HhCCEEEEECCCCCCCCCCeEEEEe----CCCccHHHHHHHHHHHHh
Confidence            777855444332322 157999994    368899999999998754

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.87  E-value=2.8e-19  Score=177.67  Aligned_cols=291  Identities=16%  Similarity=0.134  Sum_probs=187.0

Q ss_pred             HHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCC-
Q psy12303        115 TVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGT-  192 (480)
Q Consensus       115 ~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~-  192 (480)
                      .++.+++++++|.+ .+.+++++||++|+..++++++..        |.     +.+|......|.+...+....|... 
T Consensus        88 ~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~--------g~-----~~ii~~~~~yhg~~~~~~~~~~~~~~  154 (398)
T PRK03244         88 IALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLT--------GR-----TKIVAAEGGFHGRTMGALALTGQPAK  154 (398)
T ss_pred             HHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHH--------CC-----CeEEEECCCcCCccHHHHhccCCccc
Confidence            46778899988864 357999999999999999988762        21     2245554556666555554444210 


Q ss_pred             --------CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEEEee
Q psy12303        193 --------DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWLHVD  260 (480)
Q Consensus       193 --------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l~vD  260 (480)
                              ..+..+|.     .|+++|++.+++.      +++|+++.+++++|.+.|    +++|.++|++||+++|+|
T Consensus       155 ~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~------~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~D  223 (398)
T PRK03244        155 RAPFEPLPGGVEHVPY-----GDVDALAAAVDDD------TAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLD  223 (398)
T ss_pred             ccCCCCCCCCceEeCC-----CCHHHHHHhhcCC------eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence                    12344443     2789999888532      889999999999999987    899999999999999999


Q ss_pred             ccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcc
Q psy12303        261 AAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKV  340 (480)
Q Consensus       261 ~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  340 (480)
                      ++|+++......+.. ...++ ..|+++  +.|++++++++|+++.+++ +.+.....    . ..          .++ 
T Consensus       224 Ev~~g~gr~g~~~~~-~~~~~-~pDi~t--~sK~l~~G~~ig~~~~~~~-~~~~~~~~----~-~~----------~t~-  282 (398)
T PRK03244        224 EVQTGIGRTGAWFAH-QHDGV-TPDVVT--LAKGLGGGLPIGACLAFGP-AADLLTPG----L-HG----------STF-  282 (398)
T ss_pred             ccccCCcccchHHhh-hhhCC-CCCEEE--EchhhhCCcccEEEEEcHH-HHhhccCC----C-Cc----------CCC-
Confidence            999875432222211 12334 578776  4699998788999997654 33322110    0 00          000 


Q ss_pred             ccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC--CceeEEEEEeecCccCCCchhhHH
Q psy12303        341 IQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE--PEMVNVSFWYLPTRVRNMPHEKRL  418 (480)
Q Consensus       341 ~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~--~~~~~v~f~~~~~~~~~~~~~~~~  418 (480)
                        .+.+....++..+|+.+..   .+..++..++.++|.+.|++ . ++.++..  ....++.+.+ +..          
T Consensus       283 --~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~v~g~g~~~~i~~-~~~----------  344 (398)
T PRK03244        283 --GGNPVACAAALAVLDTIAS---EGLLENAERLGEQLRAGIEA-L-GHPLVDHVRGRGLLLGIVL-TAP----------  344 (398)
T ss_pred             --CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHh-c-CCCceeeEeeccEEEEEEE-ecc----------
Confidence              1111222233333433322   24567788889999999988 4 3322211  2233333333 211          


Q ss_pred             HHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        419 NILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       419 ~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                           ....+.+.+.++|.++ .+.   + .+++|++ ++..+|++||++++++|++++++
T Consensus       345 -----~~~~~~~~l~~~Gv~~-~~~---~-~~~iR~~-p~~~~t~~~i~~~~~~l~~~l~~  394 (398)
T PRK03244        345 -----VAKAVEAAAREAGFLV-NAV---A-PDVIRLA-PPLIITDAQVDAFVAALPAILDA  394 (398)
T ss_pred             -----HHHHHHHHHHHCCeEE-eec---C-CCEEEEE-CCCcCCHHHHHHHHHHHHHHHHh
Confidence                 0245778888898554 331   2 4789999 88889999999999999988764

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.87  E-value=6.4e-21  Score=180.96  Aligned_cols=171  Identities=23%  Similarity=0.240  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCC
Q psy12303        113 METVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGT  192 (480)
Q Consensus       113 ~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~  192 (480)
                      +-.++.+.+++++|.+. ..++++|+|.++..++.++..              ||+ .|+++..+|.|+..++...|.  
T Consensus        60 ~i~~~~~~~A~~~ga~~-~~~~~~Gst~a~~~~l~al~~--------------~gd-~Vlv~~~~h~s~~~~~~~~g~--  121 (294)
T cd00615          60 PIKEAQELAARAFGAKH-TFFLVNGTSSSNKAVILAVCG--------------PGD-KILIDRNCHKSVINGLVLSGA--  121 (294)
T ss_pred             HHHHHHHHHHHHhCCCC-EEEEcCcHHHHHHHHHHHcCC--------------CCC-EEEEeCCchHHHHHHHHHCCC--
Confidence            34556777999999864 344599999999988877653              556 889999999999999999887  


Q ss_pred             CCeEEeeCCC--C----CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccc
Q psy12303        193 DNCVEVPSDK--R----GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGG  266 (480)
Q Consensus       193 ~~v~~v~~~~--~----~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~  266 (480)
                       ++++++.+.  +    +.+|++++++++++.    ..+++|+++++ |++|.+.|+++|.++|+++|++++||+||+..
T Consensus       122 -~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~----~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~  195 (294)
T cd00615         122 -VPVYLKPERNPYYGIAGGIPPETFKKALIEH----PDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAH  195 (294)
T ss_pred             -EEEEecCccCcccCcCCCCCHHHHHHHHHhC----CCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhh
Confidence             677776643  2    479999999999753    23889999998 68999999999999999999999999999875


Q ss_pred             ccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCc
Q psy12303        267 LLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQD  309 (480)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~  309 (480)
                      ..+.+.... ... ..++|+++.|+||+++++.++|++.+++.
T Consensus       196 ~~~~~~~~~-~~~-~~~~div~~S~hK~l~g~~~~~~l~~~~~  236 (294)
T cd00615         196 FRFHPILPS-SAA-MAGADIVVQSTHKTLPALTQGSMIHVKGD  236 (294)
T ss_pred             hccCcccCc-chh-hcCCcEEEEchhcccchHhHHHHHHhCCC
Confidence            433332211 111 12789999999999988777788877654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK08175 aminotransferase; Validated

Probab=99.87  E-value=9.2e-19  Score=173.63  Aligned_cols=334  Identities=10%  Similarity=0.056  Sum_probs=212.1

Q ss_pred             hHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCC-CeEECCChhHHHHHHHHHHHHhcCchhHhcC
Q psy12303         85 VVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGG-DSILAPGGSISNLYAFLAARHKMFPTYKEKG  161 (480)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g  161 (480)
                      ++.....+.....+.....|....+..++.+.+.+++.+.+|.  ++. ++++|+|+++++..++.+..+          
T Consensus        44 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~----------  113 (395)
T PRK08175         44 PPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLD----------  113 (395)
T ss_pred             CHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCC----------
Confidence            3334434443333333345655566788889999999887775  444 799999999998877766543          


Q ss_pred             CCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc
Q psy12303        162 LSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD  241 (480)
Q Consensus       162 ~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~  241 (480)
                          ||+ .|+++.++|+.+...+...|.   +++.+|.++++ .+++++++++++.   ..++++|++++++||||.+.
T Consensus       114 ----~gd-~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~-~~~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~  181 (395)
T PRK08175        114 ----HGD-TVLVPNPSYPIHIYGAVIAGA---QVRSVPLVEGV-DFFNELERAIRES---YPKPKMMILGFPSNPTAQCV  181 (395)
T ss_pred             ----CCC-EEEEcCCCCcchHHHHHHcCC---eEEEEecccCC-CcHHHHHHHHhhc---cCCceEEEEeCCCCCCCCCC
Confidence                556 788999999998888888887   78889887543 3578888887642   12388999999999999998


Q ss_pred             Ch---HHHHHHHHHcCcEEEeeccccccccccccccCcccCCC---CCCccceeCccccCCCc-ccceEEEEeCchhhHh
Q psy12303        242 PI---EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGI---ERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLIS  314 (480)
Q Consensus       242 ~l---~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~---~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~  314 (480)
                      +.   ++|.++|++||+++++|++|+......... . .+..+   .+..+++.|+.|.++.| ..+|+++. ++++...
T Consensus       182 ~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~-~-~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~-~~~l~~~  258 (395)
T PRK08175        182 ELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKA-P-SIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVG-NPELVSA  258 (395)
T ss_pred             CHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCC-c-chhcCCCcccCEEEEeeccccccCcchhheeeeC-CHHHHHH
Confidence            76   789999999999999999998654311110 1 11111   12235578999999755 56888874 5555543


Q ss_pred             hhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC
Q psy12303        315 CNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE  394 (480)
Q Consensus       315 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~  394 (480)
                      ..... .+...                 +........+...+.. ....++++.++..+..+++.+.|++ . ++.+ ..
T Consensus       259 ~~~~~-~~~~~-----------------~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~-~~  316 (395)
T PRK08175        259 LARIK-SYHDY-----------------GTFTPLQVAAIAALEG-DQQCVRDIAEQYKRRRDVLVKGLHE-A-GWMV-EM  316 (395)
T ss_pred             HHHHH-hhccc-----------------CCCcHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHH-c-CCcc-cC
Confidence            32111 10000                 0000111112222221 2445666777778888999999999 5 7765 35


Q ss_pred             CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHH
Q psy12303        395 PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTE  472 (480)
Q Consensus       395 ~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~  472 (480)
                      |..+.+.+.-.+......+           ..++...+. +.|+.+.+...+.. ..+++|+++.   .+++.+...++.
T Consensus       317 p~~g~~i~i~l~~~~~~~~-----------~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~---~~~~~~~~al~~  382 (395)
T PRK08175        317 PKASMYVWAKIPEPYAAMG-----------SLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALI---ENRDRIRQAIRG  382 (395)
T ss_pred             CCEEEEEEEECCcccCCCC-----------HHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeC---CCHHHHHHHHHH
Confidence            6566655543333221100           135556555 45644433222211 1469999953   478999999999


Q ss_pred             HHHhhcc
Q psy12303        473 MDRLGHD  479 (480)
Q Consensus       473 l~~~~~~  479 (480)
                      |.+++++
T Consensus       383 l~~~l~~  389 (395)
T PRK08175        383 IKAMFRA  389 (395)
T ss_pred             HHHHHHh
Confidence            9887653

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.86  E-value=2.2e-19  Score=176.17  Aligned_cols=290  Identities=9%  Similarity=0.012  Sum_probs=195.1

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCe
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNC  195 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v  195 (480)
                      ++++.+++++|++++++++|+|+++++..++.+..+              ||+ .|++..++|+.+...+..+|.   ++
T Consensus        71 ~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~~--------------~gd-~vlv~~p~y~~~~~~~~~~g~---~~  132 (369)
T PRK08153         71 DLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYVE--------------PGD-PVVTSLGAYPTFNYHVAGFGG---RL  132 (369)
T ss_pred             HHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcC--------------CCC-EEEECCCcchHHHHHHHHcCC---eE
Confidence            566778888899888999999999988888776654              556 888999999999888888887   78


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHc--CcEEEeeccccccccccccc
Q psy12303        196 VEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY--NMWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       196 ~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~--~~~l~vD~a~~~~~~~~~~~  273 (480)
                      +.+|.+.+ .+|++++++.+...     ++++|++++|+||||.+.+.+++.++++.+  ++++++|++|+........ 
T Consensus       133 ~~vp~~~~-~~~~~~l~~~~~~~-----~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~-  205 (369)
T PRK08153        133 VTVPYRDD-REDLDALLDAARRE-----NAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAA-  205 (369)
T ss_pred             EEeeCCCC-CCCHHHHHHHhccc-----CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccc-
Confidence            88998665 47888887766432     278899999999999999988888877654  8999999999865431111 


Q ss_pred             cCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHH
Q psy12303        274 RHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL  352 (480)
Q Consensus       274 ~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~  352 (480)
                       . .+.....--++..+++|.++ .+..+|+++. +++...........+.                       ...+..
T Consensus       206 -~-~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~-~~~~~~~l~~~~~~~~-----------------------~s~~~q  259 (369)
T PRK08153        206 -P-PIDTDDPNVIRMRTFSKAYGLAGARVGYAIG-APGTIKAFDKVRNHFG-----------------------MNRIAQ  259 (369)
T ss_pred             -h-hhhhcCCCEEEEecchHhccCcchheeeeec-CHHHHHHHHHhhcCCC-----------------------CCHHHH
Confidence             1 11111122356779999998 4467899886 4444443322111110                       123333


Q ss_pred             HHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHH
Q psy12303        353 WLQWRAKG-DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGR  431 (480)
Q Consensus       353 ~~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~  431 (480)
                      .++...+. .+.+++..+...+..+++.+.|++  .|+...  |..+.+.+...+..  .    .       ....+.+.
T Consensus       260 ~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~--~g~~~~--p~~~~f~~~~~~~~--~----~-------~a~~l~~~  322 (369)
T PRK08153        260 AAALAALKDQAYLAEVVGKIAAARDRIAAIARA--NGLTPL--PSATNFVAIDCGRD--G----A-------FARAVLDG  322 (369)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH--CCCccC--CCcCcEEEEECCCC--c----c-------cHHHHHHH
Confidence            33333332 345667777888888899999988  477643  44444444222111  0    0       12467788


Q ss_pred             HHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        432 MMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       432 l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      |.++|+.+..++...+ .+++|+++.    +++|+++++++|+++..
T Consensus       323 l~~~Gi~v~~p~~~~~-~~~iRis~~----~~~~~~~~~~al~~~~~  364 (369)
T PRK08153        323 LIARDIFVRMPGVAPL-DRCIRVSCG----PDEELDLFAEALPEALE  364 (369)
T ss_pred             HHHCCeEEeeCCCCCC-CCeEEEecC----CHHHHHHHHHHHHHHHH
Confidence            8888865433322222 469999943    68999999999998764

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.86  E-value=2.7e-19  Score=173.06  Aligned_cols=283  Identities=13%  Similarity=0.098  Sum_probs=187.5

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++.+++.+|.++.++++|+|+++++..++.. ..              ||+  |++..++++.+...++..|.   +
T Consensus        43 ~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~-~~--------------~~~--vv~~~P~y~~y~~~~~~~G~---~  102 (332)
T PRK06425         43 TDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSY-IN--------------VGN--IIIVEPNFNEYKGYAFTHGI---R  102 (332)
T ss_pred             HHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHH-hC--------------CCc--EEEeCCChHHHHHHHHHcCC---e
Confidence            4577789999999998999999999999888753 32              433  44447899999999999998   8


Q ss_pred             eEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        195 CVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       195 v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                      ++.+|+++ ...|.+.+++    .     ++++|++++|+||||.+.+   +++|.++|+++++++++|++|+.+.....
T Consensus       103 v~~vp~~~-~~~~~~~l~~----~-----~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~  172 (332)
T PRK06425        103 ISALPFNL-INNNPEILNN----Y-----NFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRA  172 (332)
T ss_pred             EEEEeCCc-ccCcHHHHhh----c-----CCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccc
Confidence            89999875 3445544432    1     3789999999999999977   57777788999999999999987653211


Q ss_pred             cccCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCch
Q psy12303        272 KYRHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIF  350 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l  350 (480)
                      .......... .--+++.|++|.++ .+..+|+++.. ++..+.......++.                       ....
T Consensus       173 ~~~~~~~~~~-~~vi~~~SfSK~~~l~GlRiGy~v~~-~~li~~l~~~~~~~~-----------------------~~~~  227 (332)
T PRK06425        173 EEDVLLNRSY-GNVIIGRSLTKILGIPSLRIGYIATD-DYNMKISRKITEPWS-----------------------VCDP  227 (332)
T ss_pred             hhHHHHhccC-CCEEEEeecHHhcCCchhhheeeecC-HHHHHHHHHcCCCCc-----------------------cCHH
Confidence            0000011111 12355669999999 55788998864 445444332222111                       0111


Q ss_pred             HHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHH
Q psy12303        351 KLWLQWRAKGDE-GFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILK  429 (480)
Q Consensus       351 ~~~~~l~~~g~~-~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~  429 (480)
                      .. ..+.....+ ..++..+...+.++++.+.|++ . |++++.++..+.+.+. .+ .                ..++.
T Consensus       228 ~~-~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~-g~~~~~~~~g~f~~~~-~~-~----------------~~~~~  286 (332)
T PRK06425        228 AI-DFIRSIDLDYVAKHSLDIMENERSYLINNLEA-M-GFRAAGDPSANFITFM-IP-D----------------AHDFY  286 (332)
T ss_pred             HH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-C-CCEECCCCCceEEEEE-cC-C----------------HHHHH
Confidence            11 112221222 2356677888889999999998 4 7877545554444443 22 1                23567


Q ss_pred             HHHHhcccEEEeeeeeCCc-ccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        430 GRMMQAGTMMVGYQPLNDL-PNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       430 ~~l~~~g~~~~~~~~~~~~-~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      +.|.+.|+.+.....+... .+++|+++.    +.++.++++++|++++
T Consensus       287 ~~l~~~gi~v~~~~~f~~~~~~~iRis~~----~~~~~~~l~~al~~~~  331 (332)
T PRK06425        287 SYLLKNGILVRLLDDYECLGEQYIRIAIR----RRSFNIKLVNALRNFL  331 (332)
T ss_pred             HHHHHCCeEEEECCCCCCCCCCEEEEEeC----CHHHHHHHHHHHHHHh
Confidence            7888888655544333221 469999943    6899999999999864

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.86  E-value=2.1e-19  Score=176.73  Aligned_cols=217  Identities=16%  Similarity=0.133  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHH----HHHHcC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS----CAAVCG  189 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~----~~~~~g  189 (480)
                      .+++++.+++++|.+.  +++|+||++|+..++.++..              ||+ .|+++...|.+...    .+...|
T Consensus        63 ~~~le~~la~l~g~~~--~v~~ssG~~Ai~~al~al~~--------------~Gd-~Vi~~~~~y~~t~~~~~~~~~~~G  125 (390)
T PRK08133         63 VTMFQERLAALEGAEA--CVATASGMAAILAVVMALLQ--------------AGD-HVVSSRSLFGSTVSLFEKIFARFG  125 (390)
T ss_pred             HHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHHhC--------------CCC-EEEEccCcchhHHHHHHHHHHHcC
Confidence            3445666899999864  89999999999998877643              556 78888888876554    344566


Q ss_pred             CCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccc
Q psy12303        190 LGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLL  269 (480)
Q Consensus       190 ~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~  269 (480)
                      +   ++++++.+     |+++++++++++      |++|++++++|++|.+.|+++|.++|+++|+++++|++++.+...
T Consensus       126 ~---~v~~vd~~-----d~~~l~~~i~~~------tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~  191 (390)
T PRK08133        126 I---ETTFVDLT-----DLDAWRAAVRPN------TKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQ  191 (390)
T ss_pred             c---EEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccC
Confidence            6   78888775     889999988765      899999999999999999999999999999999999998766543


Q ss_pred             cccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCC
Q psy12303        270 SKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHND  348 (480)
Q Consensus       270 ~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~  348 (480)
                      .+ ...       ++|+++.|++|+++++. ..|++++.+...+....    .+...                 ++....
T Consensus       192 ~p-l~~-------g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~----~~~~~-----------------~g~~~~  242 (390)
T PRK08133        192 QP-LKL-------GADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVF----GFLRT-----------------AGPTLS  242 (390)
T ss_pred             Cc-hhh-------CCcEEEeecceeecCCcceEeEEEEcCHHHHHHHH----HHHHH-----------------hCCCCC
Confidence            22 123       68999999999998653 24444444444433221    11100                 111134


Q ss_pred             chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        349 IFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       349 ~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                      ...+|..++  |.+.+..+.++..+++..+.+.|++ .|+++.+.
T Consensus       243 ~~~a~~~l~--gl~tl~~R~~~~~~~a~~la~~L~~-~p~v~~v~  284 (390)
T PRK08133        243 PFNAWVFLK--GLETLSLRMEAHSANALALAEWLEA-HPGVERVF  284 (390)
T ss_pred             HHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHh-CCCeeEEE
Confidence            456666654  4567888899999999999999999 88886543

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.86  E-value=2.7e-19  Score=175.95  Aligned_cols=348  Identities=17%  Similarity=0.191  Sum_probs=209.6

Q ss_pred             ccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcC
Q psy12303         75 FMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMF  154 (480)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~  154 (480)
                      |+++.+.+.+ .++..+..++..... ..|..+++..++|++    +++++|.+.  +++|+|||+|+..++.+..+   
T Consensus        22 ~iDlltds~t-~ams~~~~~a~~~gd-~~Y~~~~g~~~Leea----ia~~~g~~~--vv~t~~Gt~Al~la~~al~~---   90 (431)
T cd00617          22 YIDLLTDSGT-GAMSDYQWAAMMLGD-EAYAGSKSFYDLEDA----VQDLFGFKH--IIPTHQGRGAENILFSILLK---   90 (431)
T ss_pred             CCCCCCCCCc-HHHHHHHHHHHHhCC-CccCCCCCHHHHHHH----HHHHHCCCe--EEEcCCHHHHHHHHHHHhCC---
Confidence            4555444433 222223344433322 347778887777776    667778864  99999999999999887754   


Q ss_pred             chhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC----------CCCCCHHHHHHHHHHHHHCCCc
Q psy12303        155 PTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK----------RGRLIPSELERLVLERKAKGDI  224 (480)
Q Consensus       155 ~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~----------~~~~d~~~L~~~i~~~~~~~~~  224 (480)
                                 ||+ +| ++...+.+....+...|.   ..+.+++++          .|.+|+++|+++|++..  ..+
T Consensus        91 -----------pGD-~V-~~~~~f~~~~~~i~~~Ga---~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~--~~~  152 (431)
T cd00617          91 -----------PGR-TV-PSNMHFDTTRGHIEANGA---VPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVG--AEN  152 (431)
T ss_pred             -----------CCC-EE-ccCCcccchHHHHHhCCC---EeEEEecccccccccccCCCCCcCHHHHHHHhCccc--CCC
Confidence                       667 55 465555566667777887   677777763          25599999999998541  123


Q ss_pred             cEEEEeccCCCcc-ccccC---hHHHHHHHHHcCcEEEeecccccccc-cc----ccccCccc-----CCCCCCccceeC
Q psy12303        225 PFFVNCTSGTTVL-GAFDP---IEEIADICQKYNMWLHVDAAWGGGLL-LS----KKYRHPRL-----TGIERADSVTWN  290 (480)
Q Consensus       225 ~~~v~~~~~~~~~-G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~-~~----~~~~~~~~-----~~~~~~D~~~~s  290 (480)
                      +++|+++.++|++ |.+.+   +++|.++|++||+++|.|+|+..... +.    +.+....+     .-...+|++++|
T Consensus       153 ~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS  232 (431)
T cd00617         153 IPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMS  232 (431)
T ss_pred             ccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEE
Confidence            7889999999998 87754   67889999999999999999764321 11    11111001     112368999999


Q ss_pred             ccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCch-HHHHHHHHhcHHHHHHHHH
Q psy12303        291 PHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIF-KLWLQWRAKGDEGFEKQID  369 (480)
Q Consensus       291 ~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l-~~~~~l~~~g~~~~~~~~~  369 (480)
                      +||.+++|. .|+++.+++++...+....  .....      ...++      +-...-+ ++..+|.....   .+.++
T Consensus       233 ~~K~~~~~~-GG~i~~~d~~l~~~~~~~~--~~~~~------~~~~g------G~~~r~~~A~A~gL~e~~~---~~~l~  294 (431)
T cd00617         233 AKKDGLVNI-GGFLALRDDELYEEARQRV--VLYEG------FVTYG------GMAGRDMEALAQGLREAVE---EDYLR  294 (431)
T ss_pred             eecCCCCcc-ceEEEeCcHHHHHHHHHhc--cccCC------ccccc------cccHHHHHHHHHHHHhccc---HHHHH
Confidence            999988865 4677777665655543211  00000      00111      1111111 11213322111   24455


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeee----
Q psy12303        370 RLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQP----  444 (480)
Q Consensus       370 ~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~----  444 (480)
                      +..+.+++|.+.|.+  .|+.++ .|..+..+|.-.+.-....+...    +.  ...+...|. +.|+..+..+.    
T Consensus       295 ~~~~~r~~l~~~L~~--~G~~v~-~P~Ggh~v~~d~~~~~~~~~~~~----~~--~~~la~~L~~e~gV~~~~~g~~~~~  365 (431)
T cd00617         295 HRVEQVRYLGDRLDE--AGVPIV-EPAGGHAVFIDAREFLPHIPQEQ----FP--AQALAAELYLEAGVRAVELGIFSAG  365 (431)
T ss_pred             HHHHHHHHHHHHHHH--CCCCcc-CCCcceEEEEEhHHhcCCCCccc----Cc--HHHHHHHHHHHcCeeEEeecceecc
Confidence            556677999999999  599885 56777666644332111100000    00  233444443 44443332211    


Q ss_pred             ---eCC-----cccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        445 ---LND-----LPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       445 ---~~~-----~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                         ..+     .-..+|+.++-..-|.++++++++.|..+.+
T Consensus       366 ~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~  407 (431)
T cd00617         366 RDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYE  407 (431)
T ss_pred             cCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHh
Confidence               111     1368999988778899999999999998765

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.86  E-value=1.2e-19  Score=178.36  Aligned_cols=222  Identities=14%  Similarity=0.151  Sum_probs=160.0

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH----
Q psy12303        107 APVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR----  182 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~----  182 (480)
                      .|....+|+    .+++++|.+.  .+++++|+.|+..++.+...              ||+ .|+++...|.+..    
T Consensus        58 ~p~~~~le~----~lA~l~g~~~--av~~~sG~~Ai~~~l~al~~--------------~Gd-~Vi~~~~~y~~t~~~~~  116 (391)
T TIGR01328        58 NPTVSNLEG----RIAFLEGTEA--AVATSSGMGAIAATLLTILK--------------AGD-HLISDECLYGCTFALLE  116 (391)
T ss_pred             CchHHHHHH----HHHHHhCCCc--EEEECCHHHHHHHHHHHHhC--------------CCC-EEEEecCcchHHHHHHH
Confidence            454445554    5899999875  78999999999888877643              556 6777877765433    


Q ss_pred             HHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecc
Q psy12303        183 SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAA  262 (480)
Q Consensus       183 ~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a  262 (480)
                      ..+...|+   ++.+++.+     |+++++++++++      +++|++++++|++|.+.|+++|.++|+++|+++++|++
T Consensus       117 ~~~~~~G~---~~~~vd~~-----d~e~l~~~i~~~------tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a  182 (391)
T TIGR01328       117 HALTKFGI---QVDFINMA-----IPEEVKAHIKDN------TKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNT  182 (391)
T ss_pred             HHHhcCCe---EEEEECCC-----CHHHHHHhhccC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECC
Confidence            33444565   77777765     789999988765      89999999999999999999999999999999999999


Q ss_pred             ccccccccccccCcccCCCCCCccceeCccccCCCccc-ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccc
Q psy12303        263 WGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ-CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVI  341 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~-~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  341 (480)
                      |+.+....+ ...       ++|+++.|++|+++++.. .|++++.+++.............                  
T Consensus       183 ~a~~~~~~~-~~~-------g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~------------------  236 (391)
T TIGR01328       183 FATPMLTNP-VAL-------GVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDM------------------  236 (391)
T ss_pred             CchhccCCc-hhc-------CCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhC------------------
Confidence            987644222 223       789999999999997654 24445566655543321110000                  


Q ss_pred             cCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        342 QCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       342 ~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                       .|.......+|..++.  .+.+..++++..+++.++.+.|++ +|+++.+.
T Consensus       237 -~g~~l~~~~a~l~l~~--L~tl~~r~~~~~~na~~la~~L~~-~p~v~~v~  284 (391)
T TIGR01328       237 -TGSVISPFDAWLILRG--LKTLNIRMKRHSENAMKVAEYLKS-HPAVEKVY  284 (391)
T ss_pred             -CCCCCCcHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHh-CCCccEEE
Confidence             1112345566766654  456677889999999999999999 88876543

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.86  E-value=1.5e-19  Score=176.75  Aligned_cols=280  Identities=13%  Similarity=0.048  Sum_probs=194.1

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCe
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNC  195 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v  195 (480)
                      ++++.+++.+|++++++++|+|+++++..++.+..+              ||+ .|+++.++|+.+...+...|.   ++
T Consensus        68 ~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~~--------------~gd-~vlv~~P~y~~~~~~~~~~g~---~v  129 (366)
T PRK01533         68 TLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVLK--------------AGD-NIVTAGATFPQYRHHAIIEGC---EV  129 (366)
T ss_pred             HHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcC--------------CCC-EEEEcCCcHHHHHHHHHHcCC---EE
Confidence            466778888899889999999999999988887754              556 788999999999999999998   88


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHH---HcCcEEEeecccccccccccc
Q psy12303        196 VEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQ---KYNMWLHVDAAWGGGLLLSKK  272 (480)
Q Consensus       196 ~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~---~~~~~l~vD~a~~~~~~~~~~  272 (480)
                      +.||.+ ++.+|+++|++++++.      +++|++++|+||||.+.+.+++.++++   +++ ++++|++|..+....+.
T Consensus       130 ~~v~~~-~~~~d~~~l~~~~~~~------~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~  201 (366)
T PRK01533        130 KEVALN-NGVYDLDEISSVVDND------TKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDF  201 (366)
T ss_pred             EEeecC-CCCcCHHHHHHHhCcC------CcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccC
Confidence            889986 4569999999988654      789999999999999988766666654   555 67889999754422110


Q ss_pred             ccCcccCCCC--CCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCc
Q psy12303        273 YRHPRLTGIE--RADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI  349 (480)
Q Consensus       273 ~~~~~~~~~~--~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~  349 (480)
                       .. .+..++  .--+++.|++|.++ .+..+|+++. +++...........|-                       ...
T Consensus       202 -~~-~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~-~~~~~~~l~~~~~~~~-----------------------~~~  255 (366)
T PRK01533        202 -PE-TLPLLEKHKNILVLRTFSKAYGLASFRVGYAVG-HEELIEKLNVVRLPFN-----------------------VSS  255 (366)
T ss_pred             -cc-hhHHhccCCCEEEEeCchHHhcChHHHHhHHhC-CHHHHHHHHHhcCCCC-----------------------cCH
Confidence             01 111111  22366779999998 4477898875 4555544332211110                       233


Q ss_pred             hHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHH
Q psy12303        350 FKLWLQWRAKG-DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPIL  428 (480)
Q Consensus       350 l~~~~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i  428 (480)
                      +...++...+. .+..++..+...+..+++.+.+++ . |+++. ++..+.+.+.+ + .                ..++
T Consensus       256 ~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~-~-g~~~~-~~~~nf~~~~~-~-~----------------~~~~  314 (366)
T PRK01533        256 LAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKE-N-EIPFY-QSQTNFIFLPV-E-N----------------GGEI  314 (366)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh-C-CCccC-CCcCcEEEEeC-C-C----------------HHHH
Confidence            34444444442 345566667777788888888888 4 77764 55555444432 2 1                1356


Q ss_pred             HHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        429 KGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       429 ~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .+.|.+.|+.+..+      .+++|+++.    +.++.++++++|+++.+
T Consensus       315 ~~~l~~~GI~Vr~~------~~~iRis~~----~~~~~~~l~~al~~~~~  354 (366)
T PRK01533        315 YEACAHAGFIIRPF------PNGVRITVG----TREQNEGVISVLQQHFE  354 (366)
T ss_pred             HHHHHHCCcEEccC------CCceEEeCC----CHHHHHHHHHHHHHHHH
Confidence            78888899665542      368999943    78999999999998764

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.86  E-value=3.8e-19  Score=177.94  Aligned_cols=315  Identities=15%  Similarity=0.108  Sum_probs=197.2

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        110 FILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      ......++.+.+++++|.+...+++++|||+|+..++++++...            +++.+++.....|.+...++...+
T Consensus        77 ~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~~------------~~~~ii~~~~~yhg~~~~~~~~~~  144 (413)
T cd00610          77 YNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYT------------GRKKIISFEGAYHGRTLGALSLTG  144 (413)
T ss_pred             CCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHc------------CCCeEEEECCCcCCccHHHHHhcC
Confidence            35677788888999999655679999999999999999987531            225456666667777666655543


Q ss_pred             CC---------CCCeEEeeCCC------CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHH
Q psy12303        190 LG---------TDNCVEVPSDK------RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADIC  250 (480)
Q Consensus       190 ~~---------~~~v~~v~~~~------~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~  250 (480)
                      ..         ...++.+|.+.      ++..|+++|++.+++.   +..+++|+++..++++|.+.|    +++|.++|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~  221 (413)
T cd00610         145 SKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEH---PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELC  221 (413)
T ss_pred             CccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcC---CCCEEEEEEccccCCCCCccCCHHHHHHHHHHH
Confidence            21         12456777663      2344888898888652   223788999988888899877    99999999


Q ss_pred             HHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccccccc
Q psy12303        251 QKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLY  330 (480)
Q Consensus       251 ~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  330 (480)
                      ++||+++++|++|+++......... ...++ ..|+++  +.|++++++++|+++. +++..... . ...+...     
T Consensus       222 ~~~~~~li~Dev~~g~g~~g~~~~~-~~~~~-~~d~~t--~sK~l~~g~~~g~~~~-~~~~~~~~-~-~~~~~~~-----  289 (413)
T cd00610         222 RKHGILLIADEVQTGFGRTGKMFAF-EHFGV-EPDIVT--LGKGLGGGLPLGAVLG-REEIMDAF-P-AGPGLHG-----  289 (413)
T ss_pred             HHcCCEEEEeccccCCCcCcchhhH-hhcCC-CCCeEE--EcccccCccccEEEEE-cHHHHHhh-c-cCCCCCC-----
Confidence            9999999999999865322211111 12223 457665  4599998888999876 44444432 0 0000000     


Q ss_pred             CcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC---CeEEecCCceeEEEEEeecC
Q psy12303        331 DVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD---KFYLILEPEMVNVSFWYLPT  407 (480)
Q Consensus       331 ~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~---g~~~~~~~~~~~v~f~~~~~  407 (480)
                            .++   ++......++..+++.+..   .++.++..++.+++.+.|++ ..   ++.....+...++.+.+.+.
T Consensus       290 ------~t~---~~~~~~~~a~~a~l~~l~~---~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~g~~~~~~~~~~  356 (413)
T cd00610         290 ------GTF---GGNPLACAAALAVLEVLEE---EGLLENAAELGEYLRERLRE-LAEKHPLVGDVRGRGLMIGIELVKD  356 (413)
T ss_pred             ------CCC---CcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHH-HHhhCCcEEEeecCceEEEEEEecC
Confidence                  000   1111222344444554432   35567778888888888876 42   22111134455555555332


Q ss_pred             ccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        408 RVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       408 ~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      ......+.     .  ....+.+.|.++|+. +.+..    .+.+|++ ++..+|++||++++++|++++
T Consensus       357 ~~~~~~~~-----~--~~~~~~~~l~~~gv~-v~~~~----~~~lR~~-~~~~~t~~~i~~~~~~l~~~l  413 (413)
T cd00610         357 RATKPPDK-----E--LAAKIIKAALERGLL-LRPSG----GNVIRLL-PPLIITEEEIDEGLDALDEAL  413 (413)
T ss_pred             CCcCCcch-----H--HHHHHHHHHHHCCeE-EeecC----CCEEEEE-CCCcCCHHHHHHHHHHHHHhC
Confidence            10000000     0  124577888888844 44321    3689999 888899999999999998753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK05968 hypothetical protein; Provisional

Probab=99.86  E-value=1.3e-19  Score=178.08  Aligned_cols=216  Identities=13%  Similarity=0.147  Sum_probs=155.9

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH----HHHHHcCCC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR----SCAAVCGLG  191 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~----~~~~~~g~~  191 (480)
                      ++.+.+++++|.+.  .+++++|+.|+..++.+...              ||+ .|+++...|.+..    ..+...|+ 
T Consensus        67 ~le~~lA~l~g~~~--av~~~sG~~Ai~~al~al~~--------------~Gd-~Vl~~~~~y~~t~~~~~~~~~~~G~-  128 (389)
T PRK05968         67 AFEEMLAKLEGAED--ARGFASGMAAISSTVLSFVE--------------PGD-RIVAVRHVYPDAFRLFETILKRMGV-  128 (389)
T ss_pred             HHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHHhC--------------CCC-EEEEeCCCchHHHHHHHHHHHHcCc-
Confidence            34455899999865  57778888999888876543              556 6777777777643    44555676 


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                        ++++++.+     |++++++++ +.      +++|++++++++++.+.|+++|.++|+++|+++++|++|+.+....+
T Consensus       129 --~v~~vd~~-----d~~~l~~~i-~~------tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p  194 (389)
T PRK05968        129 --EVDYVDGR-----DEEAVAKAL-PG------AKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRP  194 (389)
T ss_pred             --eEEEeCCC-----CHHHHHHhc-cc------CCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCc
Confidence              77777654     889998887 33      78999999999999999999999999999999999999987653222


Q ss_pred             cccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCc
Q psy12303        272 KYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI  349 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~  349 (480)
                       ...       ++|+++.|++|++++|.+  .|+++ .+++.+.........++                    +.....
T Consensus       195 -~~~-------g~Divv~S~tK~l~g~~~~~gG~i~-~~~~~~~~l~~~~~~~~--------------------g~~~~~  245 (389)
T PRK05968        195 -ITL-------GVDLVIHSASKYLGGHSDTVAGVVA-GSKEHIARINAEAYPYL--------------------GAKLSP  245 (389)
T ss_pred             -hhc-------CCcEEEeeccccccCCCCeEEEEEE-ECHHHHHHHHHHHHHhC--------------------CCCCCh
Confidence             223       789999999999998754  45554 55555443321111111                    011234


Q ss_pred             hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC
Q psy12303        350 FKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP  395 (480)
Q Consensus       350 l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~  395 (480)
                      ..+|..++.  .+.+..++++..++++.+.+.|++ +|+++.+..|
T Consensus       246 ~~A~~~l~~--L~tl~~r~~~~~~~a~~la~~L~~-~p~v~~v~~p  288 (389)
T PRK05968        246 FEAWLLLRG--LRTLPLRMKAHEASALEIARRLKA-HPVVERVCHP  288 (389)
T ss_pred             HHHHHHHcc--cCcHHHHHHHHHHHHHHHHHHHHh-CCCccEEECC
Confidence            566665544  556788899999999999999999 8998766543

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.86  E-value=8.7e-20  Score=178.72  Aligned_cols=221  Identities=19%  Similarity=0.172  Sum_probs=160.7

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA  185 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~  185 (480)
                      ..|...++|+    .+++++|.+.  ++++++|++|+..++.++..              ||+ .|+++...|.+....+
T Consensus        38 ~~p~~~~le~----~la~l~g~~~--a~~~~sG~~Ai~~~l~~l~~--------------~gd-~Vl~~~~~y~~~~~~~   96 (369)
T cd00614          38 GNPTVDALEK----KLAALEGGEA--ALAFSSGMAAISTVLLALLK--------------AGD-HVVASDDLYGGTYRLF   96 (369)
T ss_pred             CChhHHHHHH----HHHHHHCCCC--EEEEcCHHHHHHHHHHHHcC--------------CCC-EEEECCCCcchHHHHH
Confidence            4455555555    4888888754  78889999999999988754              446 7888888887765433


Q ss_pred             ----HHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeec
Q psy12303        186 ----AVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDA  261 (480)
Q Consensus       186 ----~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~  261 (480)
                          ...|+   ++..++.+     |+++++++++++      +++|++++++|++|.+.|+++|.++|+++|+++++|+
T Consensus        97 ~~~~~~~g~---~~~~v~~~-----d~~~l~~~i~~~------~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~  162 (369)
T cd00614          97 ERLLPKLGI---EVTFVDPD-----DPEALEAAIKPE------TKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDN  162 (369)
T ss_pred             HHHHhhcCe---EEEEeCCC-----CHHHHHHhcCCC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEEC
Confidence                34455   77777765     688999888654      8999999999999999999999999999999999999


Q ss_pred             cccccccccccccCcccCCCCCCccceeCccccCCCcc--cceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCc
Q psy12303        262 AWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL--QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDK  339 (480)
Q Consensus       262 a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~--~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  339 (480)
                      +|+.+.... ...+       ++|+++.|++|+++++.  ..|+++.+++++.+....... +                 
T Consensus       163 t~~~~~~~~-~~~~-------g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~-~-----------------  216 (369)
T cd00614         163 TFATPYLQR-PLEL-------GADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRL-A-----------------  216 (369)
T ss_pred             CCcchhcCC-hhhh-------CCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHH-h-----------------
Confidence            998775422 2233       78999999999998753  256666655344433221110 0                 


Q ss_pred             cccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        340 VIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       340 ~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                         .+.......+|+.++.+  +.+..++++..+++.++.+.|++ +|+++-+.
T Consensus       217 ---~g~~~~p~~a~~~l~~l--~tl~~r~~~~~~na~~la~~L~~-~~~v~~V~  264 (369)
T cd00614         217 ---LGTILSPFDAWLLLRGL--KTLPLRMERHSENALKVAEFLEK-HPKVERVY  264 (369)
T ss_pred             ---hCCCCCHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHc-CCCccEEE
Confidence               01113455667666554  55677889999999999999999 88775443

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.86  E-value=7.9e-19  Score=175.66  Aligned_cols=316  Identities=12%  Similarity=0.093  Sum_probs=222.3

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCch
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHY  179 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~  179 (480)
                      ..|....+...+.+.+.+++....|.  +++++++|+|+++|+..++.+..+              ||+ .|++.+++|+
T Consensus       126 ~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~--------------pGd-~v~vE~PtY~  190 (459)
T COG1167         126 LQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLD--------------PGD-TVLVEDPTYP  190 (459)
T ss_pred             hcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCC--------------CCC-EEEEcCCCcH
Confidence            44555577788888888888866676  456899999999999988877764              666 8999999999


Q ss_pred             hHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccE-EEEeccCCCccccccCh---HHHHHHHHHcCc
Q psy12303        180 SVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPF-FVNCTSGTTVLGAFDPI---EEIADICQKYNM  255 (480)
Q Consensus       180 s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~-~v~~~~~~~~~G~~~~l---~~I~~i~~~~~~  255 (480)
                      ....+++.+|+   +++.||+|++| +|+++|++.++..     +|+ +.+....+||||.+.++   ++|.++|++|++
T Consensus       191 ~~~~~~~~~g~---~~~~vp~d~~G-~~~e~le~~~~~~-----~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~  261 (459)
T COG1167         191 GALQALEALGA---RVIPVPVDEDG-IDPEALEEALAQW-----KPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDV  261 (459)
T ss_pred             HHHHHHHHcCC---cEEecCCCCCC-CCHHHHHHHHhhc-----CCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCC
Confidence            99999999999   89999998655 9999999999875     144 45777889999999886   789999999999


Q ss_pred             EEEeeccccccccccccccCcccCCC--CCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcc
Q psy12303        256 WLHVDAAWGGGLLLSKKYRHPRLTGI--ERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVR  333 (480)
Q Consensus       256 ~l~vD~a~~~~~~~~~~~~~~~~~~~--~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  333 (480)
                      |++.|..|+..........  .+.+.  .+--+.+.|++|.+..+..+|+++... .+.+.........-.+        
T Consensus       262 ~IIEDD~y~el~~~~~p~~--~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~-~~~~~~~~~k~~~~~~--------  330 (459)
T COG1167         262 LIIEDDYYGELRYDGPPPP--PLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPP-ELIEKLLRLKQAADLG--------  330 (459)
T ss_pred             eEEeeCcchhhhcCCCCCC--ChHhhCCCCCEEEEeeehhhcccccceeeeeCCH-HHHHHHHHHHHHhcCC--------
Confidence            9999999998776432211  11111  134467889999999889999999654 3333221110000000        


Q ss_pred             cCCCCccccCCCCCCchHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCC
Q psy12303        334 YDTGDKVIQCGRHNDIFKLWLQWRAKG--DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRN  411 (480)
Q Consensus       334 ~~~~~~~~~~~r~~~~l~~~~~l~~~g--~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~  411 (480)
                                +..+....+...+. -|  ...+..+.+...+..+.+.+.|.++.++...+..|..+++++.-.|..++ 
T Consensus       331 ----------~s~~~Q~~la~~l~-~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~~~-  398 (459)
T COG1167         331 ----------PSSLSQAALAAFLL-SGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEGID-  398 (459)
T ss_pred             ----------CChHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEcCCCCC-
Confidence                      00011112222233 23  45567777777888889999999844544445678888887766665532 


Q ss_pred             CchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCC----cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        412 MPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLND----LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       412 ~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~----~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                                   ..++...+.++|+.+...+....    ..+++|+++.+.  ++++|++.++.|.+++++
T Consensus       399 -------------~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~--~~e~i~~gi~~l~~~~~~  455 (459)
T COG1167         399 -------------ARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSP--SEEEIEEGIKRLAALLRE  455 (459)
T ss_pred             -------------HHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCC--CHHHHHHHHHHHHHHHHH
Confidence                         24677888888877665232221    146999995443  589999999998877653

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.86  E-value=2.2e-19  Score=175.20  Aligned_cols=223  Identities=12%  Similarity=0.079  Sum_probs=162.1

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA  185 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~  185 (480)
                      ..|....+|+.    ++++.|.+  ++++++||++|+..++.+...              ||+ +|+++...|.+....+
T Consensus        51 ~npt~~~Le~~----lA~leg~e--~ivvt~gg~~Ai~~~l~all~--------------~Gd-~Il~~~~~y~~~~~~~  109 (388)
T PRK08861         51 GNPNRGLLEQT----LSELESGK--GAVVTNCGTSALNLWVSALLG--------------PDD-LIVAPHDCYGGTYRLF  109 (388)
T ss_pred             CCchHHHHHHH----HHHHhCCC--eEEEECCHHHHHHHHHHHHcC--------------CCC-EEEEcCCchHHHHHHH
Confidence            34555555554    88888864  599999999999999887643              556 7888888888655544


Q ss_pred             HH-cCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccc
Q psy12303        186 AV-CGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWG  264 (480)
Q Consensus       186 ~~-~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~  264 (480)
                      .. ......++++++.     .|+++++++++++      |++|++++++||+|.+.|+++|.++|+++|+++++|++|+
T Consensus       110 ~~~~~~~gi~v~~vd~-----~d~e~l~~~i~~~------tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~  178 (388)
T PRK08861        110 NTRANKGDFKVQFVDQ-----SDAAALDAALAKK------PKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFL  178 (388)
T ss_pred             HHHHhcCCeEEEEECC-----CCHHHHHHhcCcC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcc
Confidence            22 2111125666643     4889999888765      8999999999999999999999999999999999999998


Q ss_pred             ccccccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcccc
Q psy12303        265 GGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQ  342 (480)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  342 (480)
                      .+....+ ...       ++|+++.|+|||+++|.+  .|+++.+++++........ .+                    
T Consensus       179 ~~~~~~p-l~~-------GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~-~~--------------------  229 (388)
T PRK08861        179 TPVLQKP-LEL-------GADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWG-NC--------------------  229 (388)
T ss_pred             ccccCCC-ccc-------CCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHH-hc--------------------
Confidence            7754332 233       899999999999998764  4666555554433221100 00                    


Q ss_pred             CCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        343 CGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       343 ~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      .|.......+|+.++.  .+.+.-+++++.+++..+.+.|++ +|.+.-+
T Consensus       230 ~G~~~~p~~a~l~~rg--l~Tl~lR~~~~~~~a~~~a~~L~~-~p~v~~V  276 (388)
T PRK08861        230 IGATGTPFDSYMTLRG--IRTLGARMRVHEESAQQILAYLQT-QSLVGTI  276 (388)
T ss_pred             cCCCCChHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHh-CCCeeEE
Confidence            1222455677766654  677888999999999999999999 8887544

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.85  E-value=1.2e-18  Score=167.37  Aligned_cols=288  Identities=16%  Similarity=0.182  Sum_probs=210.8

Q ss_pred             HHHHHHHHHHhC-CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        115 TVVLEKMRQIIG-WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       115 ~~~~~~la~~~g-~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      .++++.+++.+| .++.+++.++|+++.+...+++.+.              ||+ .|+++.+++..+...++..|.   
T Consensus        60 ~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~~--------------~gd-~vl~~~Ptf~~Y~~~a~~~g~---  121 (356)
T COG0079          60 RELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFVE--------------PGD-TVLIPEPTFSMYEIAAQLAGA---  121 (356)
T ss_pred             HHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhhc--------------CCC-EEEEcCCChHHHHHHHHhcCC---
Confidence            356677899999 6777889999999999888888875              555 788999999999999999998   


Q ss_pred             CeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHc--CcEEEeeccccccccccc
Q psy12303        194 NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY--NMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       194 ~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~--~~~l~vD~a~~~~~~~~~  271 (480)
                      +++.||.++ +.+|++.+.++++++      +++|++++|+||||...+.++|.+++...  +.++++|+||.-+.-...
T Consensus       122 ~~~~v~~~~-~~~d~~~~~~~~~~~------~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~~~~  194 (356)
T COG0079         122 EVVKVPLKE-FRLDLDAILAAIRDK------TKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSPESS  194 (356)
T ss_pred             eEEEecccc-cccCHHHHHHhhhcC------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCCchh
Confidence            899999988 999999999999885      88999999999999999888888887754  789999999988765111


Q ss_pred             cccCcccCCCCCCc-cceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCc
Q psy12303        272 KYRHPRLTGIERAD-SVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI  349 (480)
Q Consensus       272 ~~~~~~~~~~~~~D-~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~  349 (480)
                      . .  .+.  ..-+ ++.=+++|.++.+ ..+|+.+ .+++++........+|-.                       +.
T Consensus       195 ~-~--l~~--~~~nlivlRTfSKa~gLAGlRlGy~i-a~~~~i~~l~~vr~p~~v-----------------------~~  245 (356)
T COG0079         195 L-E--LLK--YPPNLIVLRTFSKAFGLAGLRVGYAI-ANPELIAALNKVRPPFNV-----------------------SS  245 (356)
T ss_pred             h-h--hcc--CCCCEEEEEecHHhhhcchhceeecc-CCHHHHHHHHHhcCCCCC-----------------------CH
Confidence            0 0  111  1222 3444899977654 6789855 677777777666666532                       23


Q ss_pred             hHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeE-EecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHH
Q psy12303        350 FKLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFY-LILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPI  427 (480)
Q Consensus       350 l~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~-~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~  427 (480)
                      ++..++...+ -.+.+++..++....++++.+.|++ +. +. ++ +.. .+|++...+..              . ...
T Consensus       246 ~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~-~~-~~~v~-pS~-aNFvlv~~~~~--------------~-~~~  306 (356)
T COG0079         246 PALAAAIAALRDADYLEESVERIREERERLYAALKA-LG-LFGVF-PSQ-ANFVLVRVPDA--------------E-AAA  306 (356)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHh-CC-CCeec-CCC-CcEEEEECCCc--------------c-HHH
Confidence            3444444433 2467788889999999999999999 65 55 43 343 55544332211              0 125


Q ss_pred             HHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        428 LKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       428 i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.+.|.++|+++..........+++|+++.    |+++-++++++|+++.+.
T Consensus       307 l~~~L~~~giivR~~~~~~~~~~~lRitvg----t~een~~ll~AL~~~~~~  354 (356)
T COG0079         307 LAEALLKKGILVRDCSSVGLLPGYLRITVG----TPEENDRLLAALREVLKG  354 (356)
T ss_pred             HHHHHHHCCEEEEeCCCCCCCCCeEEEEeC----CHHHHHHHHHHHHHHHhc
Confidence            678888999776665332222569999954    678889999999987653

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.85  E-value=8.6e-19  Score=174.36  Aligned_cols=301  Identities=15%  Similarity=0.100  Sum_probs=185.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC-ceEEEecCCCchhHHHHHHHcCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG-QLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g-~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      ....++.+.+++++|.+  .+++++|||+|+..|+++++....   ..+|.+  +| +.+|..+...|.+...+....+-
T Consensus        83 ~~~~~l~~~l~~~~~~~--~~~~~~SGs~A~e~al~~a~~~~~---~~~g~~--~~~~~vi~~~~~~HG~~~~~~~~~~~  155 (401)
T PRK00854         83 DQLAPLYEELAALTGSH--KVLPMNSGAEAVETAIKAVRKWGY---EVKGVP--EGQAEIIVCADNFHGRTLSIVGFSTD  155 (401)
T ss_pred             HHHHHHHHHHHhhCCCC--EEEEeCCcHHHHHHHHHHHHHHHH---hccCCC--CCCceEEEECCCcCCccHHHHhccCC
Confidence            34445566688888764  599999999999999999986310   111221  12 33566666667765544432110


Q ss_pred             ---------CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEE
Q psy12303        191 ---------GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWL  257 (480)
Q Consensus       191 ---------~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l  257 (480)
                               ....+..+|.     .|+++|++++.+.      +++|+++++++++|.+.|    +++|.++|++||+++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~-----~d~~~le~~i~~~------~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~l  224 (401)
T PRK00854        156 PDARGGFGPFTPGFRVVPF-----GDAEALEAAITPN------TVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTL  224 (401)
T ss_pred             ccccccCCCCCCCeEEeCC-----CCHHHHHHHhCCC------eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence                     0113444443     3889999988653      899999999999999987    999999999999999


Q ss_pred             EeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCcccccccccccCcccCC
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDT  336 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  336 (480)
                      ++|++|++.......+.. ...++ .+|.++++  |++++.+ ++|+++.++ +.+.....     ....          
T Consensus       225 I~DEv~~g~g~~g~~~~~-~~~g~-~~D~~~~~--K~l~gg~~~ig~v~~~~-~~~~~l~~-----~~~~----------  284 (401)
T PRK00854        225 ILDEIQTGLGRTGKLLAE-EHEGI-EADVTLIG--KALSGGFYPVSAVLSNS-EVLGVLKP-----GQHG----------  284 (401)
T ss_pred             EEechhhCCCCCchHhHH-hhcCC-CCCEEEec--ccccCCccCeEEEEEcH-HHHhcccC-----CCCC----------
Confidence            999999854322111111 12333 56887764  9998763 678777644 34332210     0000          


Q ss_pred             CCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec--CCceeEEEEEeecCccCCCch
Q psy12303        337 GDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPH  414 (480)
Q Consensus       337 ~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~--~~~~~~v~f~~~~~~~~~~~~  414 (480)
                      .++   ++   ..+..++++..+..-.-....++..++++++.+.|++ .. ...+.  .+...++.+.+.+...     
T Consensus       285 ~t~---~~---~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L~~-~~-~~~~~~~~g~g~~~~i~~~~~~~-----  351 (401)
T PRK00854        285 STF---GG---NPLACAVARAALKVLTEEGMIENAAEMGAYFLEGLRS-IR-SNIVREVRGRGLMLAVELEPEAG-----  351 (401)
T ss_pred             CCC---Cc---CHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh-hc-cCceEEEeccceEEEEEEecCch-----
Confidence            000   11   2233333333321111133568888899999999988 53 22111  2344445554432210     


Q ss_pred             hhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        415 EKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       415 ~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                               ...++.+.|.++|+.+ ..   .+ .+++|++ ++..+|++||++++++|++++.
T Consensus       352 ---------~~~~~~~~L~~~GV~v-~~---~~-~~~lR~~-p~~~~t~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        352 ---------GARQYCEALKERGLLA-KD---TH-DHTIRLA-PPLVITREQVDWALEQIAKVLA  400 (401)
T ss_pred             ---------hHHHHHHHHHHCCeEE-ec---CC-CCEEEEe-CCcccCHHHHHHHHHHHHHHhh
Confidence                     0235778888888543 32   12 4699999 8889999999999999998754

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.85  E-value=4.7e-19  Score=174.50  Aligned_cols=213  Identities=15%  Similarity=0.122  Sum_probs=155.1

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH----HHcCCC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA----AVCGLG  191 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~----~~~g~~  191 (480)
                      ++.+.+++++|.+.  ..++++|+.|+..++.+...              ||+ .|+++...|.+.....    ...|+ 
T Consensus        69 ~Le~~lA~l~G~~~--~~~~~sG~~Ai~~~l~~~l~--------------~Gd-~Vl~~~~~y~~~~~~~~~~~~~~G~-  130 (398)
T PRK07504         69 MFEKRMCALEGAED--ARATASGMAAVTAAILCQVK--------------AGD-HVVAARALFGSCRYVVETLLPRYGI-  130 (398)
T ss_pred             HHHHHHHHHhCCCe--eeEecCHHHHHHHHHHHHhC--------------CCC-EEEEcCCchhHHHHHHHHHHhhcCe-
Confidence            34455888999976  45688999999877765443              556 7888888887755443    33455 


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                        +++.++     .+|+++++++++++      |++|++++++|++|.+.|+++|.++|+++|+++++|++|+.+....+
T Consensus       131 --~v~~vd-----~~d~e~l~~ai~~~------tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~  197 (398)
T PRK07504        131 --ESTLVD-----GLDLDNWEKAVRPN------TKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKP  197 (398)
T ss_pred             --EEEEEC-----CCCHHHHHHhcCcC------ceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccCCc
Confidence              666664     26899999998765      89999999999999999999999999999999999999987654322


Q ss_pred             cccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCch
Q psy12303        272 KYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIF  350 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l  350 (480)
                       ...       ++|+++.|+||+++++. ..|++++.++..+....   ..+...                 ++......
T Consensus       198 -~~~-------gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~---~~~~~~-----------------~g~~~s~~  249 (398)
T PRK07504        198 -LEL-------GAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHL---QDYFRH-----------------TGPSLSPF  249 (398)
T ss_pred             -hhh-------CCCEEEeeccccccCCccceEEEEEeCcHHHHHHH---HHHHHH-----------------hCCCCCHH
Confidence             133       78999999999998753 45555555554433211   011100                 12224556


Q ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeE
Q psy12303        351 KLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFY  390 (480)
Q Consensus       351 ~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~  390 (480)
                      .+|..++.  .+.+..++++..+++..+.+.|++ +|++.
T Consensus       250 ~A~~~l~~--L~tl~~R~~~~~~na~~la~~L~~-~p~v~  286 (398)
T PRK07504        250 NAWTLLKG--LETLPVRVRQQTESAAAIADFLAG-HPKVA  286 (398)
T ss_pred             HHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHc-CCCcc
Confidence            77777654  566888999999999999999999 88875

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.85  E-value=1.9e-19  Score=177.01  Aligned_cols=235  Identities=15%  Similarity=0.120  Sum_probs=161.4

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA  185 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~  185 (480)
                      ..|...++|    +.+++++|.+.  .+++++|+.|+..++.+...              ||+ .|+++...|......+
T Consensus        59 ~~pt~~~Le----~~lA~l~G~~~--al~~~sG~~Ai~~~l~al~~--------------~Gd-~Vv~~~~~y~~~~~~~  117 (386)
T PRK06767         59 GNPTVKLFE----ERMAVLEGGEE--ALAFGSGMAAISATLIGFLK--------------AGD-HIICSNGLYGCTYGFL  117 (386)
T ss_pred             CCcchHHHH----HHHHHHhCCCc--EEEECCHHHHHHHHHHHHhC--------------CCC-EEEEcCCcHHHHHHHH
Confidence            345555555    45888889754  77888889888888776643              556 7888888887766655


Q ss_pred             HHcCCC-CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccc
Q psy12303        186 AVCGLG-TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWG  264 (480)
Q Consensus       186 ~~~g~~-~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~  264 (480)
                      ...+.. ..++..++.     .|+++++++++++      +++|++++++|++|.+.|+++|.++|+++|+++++|++|+
T Consensus       118 ~~~~~~~gi~~~~~~~-----~d~~~l~~~i~~~------tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a  186 (386)
T PRK06767        118 EVLEEKFMITHSFCDM-----ETEADIENKIRPN------TKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFC  186 (386)
T ss_pred             HHHHhhcCeEEEEeCC-----CCHHHHHHhhCcC------ceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCc
Confidence            444211 114444443     3888999888764      8999999999999999999999999999999999999997


Q ss_pred             ccccccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcccc
Q psy12303        265 GGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQ  342 (480)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  342 (480)
                      .+....+ ...       ++|+++.|++|+++++..  .|+++.++ +.+..........+                   
T Consensus       187 ~~~~~~p-l~~-------g~Div~~S~sK~l~g~g~~~gG~v~~~~-~~i~~~~~~~~~~~-------------------  238 (386)
T PRK06767        187 SPYLQRP-LEL-------GCDAVVHSATKYIGGHGDVVAGVTICKT-RALAEKIRPMRKDI-------------------  238 (386)
T ss_pred             ccccCCc-hhc-------CCcEEEecCcceecCCCCceeEEEEeCh-HHHHHHHHHHHHHh-------------------
Confidence            6543322 123       789999999999987644  46666544 33332210000000                   


Q ss_pred             CCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC-----------ceeEEEEEe
Q psy12303        343 CGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP-----------EMVNVSFWY  404 (480)
Q Consensus       343 ~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~-----------~~~~v~f~~  404 (480)
                       +.....+.+|+.++.  .+.+..++++..+++.++.+.|++ +|+++.+.-|           .+++++|..
T Consensus       239 -g~~~~~~~a~l~~~~--L~tl~~r~~~~~~~a~~la~~L~~-~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l  307 (386)
T PRK06767        239 -GGIMAPFDAWLLLRG--LKTLAVRMDRHCDNAEKIVSFLKN-HDAVEGVWYPEGELASRQMKRGGGVISFSI  307 (386)
T ss_pred             -CCCCCHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHHc-CCCccEEECCCcHHHHHhCCCCCceEEEEE
Confidence             001234456665554  345667888999999999999999 9999865433           346677754

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.85  E-value=2.1e-19  Score=176.60  Aligned_cols=211  Identities=15%  Similarity=0.143  Sum_probs=152.9

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH----HHHHHcCCC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR----SCAAVCGLG  191 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~----~~~~~~g~~  191 (480)
                      ++++.++++.|.+.  .+++++|+.|+..++. +..              +|+ .|+++...|++..    ..+...|+ 
T Consensus        58 ~le~~lA~l~g~~~--~v~~~sG~~ai~~~l~-~l~--------------~Gd-~Vlv~~~~y~~~~~~~~~~~~~~G~-  118 (390)
T PRK08064         58 ALEDIIAELEGGTK--GFAFASGMAAISTAFL-LLS--------------KGD-HVLISEDVYGGTYRMITEVLSRFGI-  118 (390)
T ss_pred             HHHHHHHHHhCCCC--eEEECCHHHHHHHHHH-HhC--------------CCC-EEEEccCccchHHHHHHHHHHHcCC-
Confidence            34455889999874  5666778888876664 322              456 6778888887544    34445666 


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                        +++.++.+     |+++++++++++      +++|++++++|++|.+.|+++|.++|+++|+++++|++|+.+....+
T Consensus       119 --~v~~v~~~-----d~~~l~~~l~~~------tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~  185 (390)
T PRK08064        119 --EHTFVDMT-----NLEEVAQNIKPN------TKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKP  185 (390)
T ss_pred             --EEEEECCC-----CHHHHHHhcCCC------ceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCc
Confidence              78888764     788898888765      89999999999999999999999999999999999999987654322


Q ss_pred             cccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCc
Q psy12303        272 KYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI  349 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~  349 (480)
                      . .+       ++|+++.|+||+++++.+  .|+++++++++.........++                     +....+
T Consensus       186 ~-~~-------g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~---------------------g~~~~~  236 (390)
T PRK08064        186 L-DL-------GADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSF---------------------GAVLGV  236 (390)
T ss_pred             h-hh-------CCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhc---------------------CCCCCH
Confidence            2 33       789999999999998766  4777777665544432111111                     111234


Q ss_pred             hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeE
Q psy12303        350 FKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFY  390 (480)
Q Consensus       350 l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~  390 (480)
                      ..+|..++  |.+.+..+.++..+++..+.+.|++ +|.+.
T Consensus       237 ~~a~l~~~--gl~tl~~R~~~~~~~a~~la~~L~~-~~~v~  274 (390)
T PRK08064        237 QDCWLVLR--GLKTLHVRLEHSSETANKIALYLQE-HPKVQ  274 (390)
T ss_pred             HHHHHHHc--ccCcHHHHHHHHHHHHHHHHHHHhc-CCCcc
Confidence            45665443  4556778889999999999999998 77653

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.85  E-value=7.2e-19  Score=171.88  Aligned_cols=311  Identities=12%  Similarity=0.022  Sum_probs=192.2

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      .+++.+++++++|.+.  +++|+|||+|+..++.++.-             .||+ +|+++..+|++...++...|.   
T Consensus        33 ~~~~e~~la~~~g~~~--~v~~~sgt~aL~~~l~al~~-------------~pGd-~Viv~~~t~~~~~~~~~~~G~---   93 (376)
T TIGR02379        33 SRRCETWLENRTGTKK--ALLTPSCTAALEMAALLLDI-------------QPGD-EVIMPSYTFVSTANAFVLRGA---   93 (376)
T ss_pred             HHHHHHHHHHHhCCCe--EEEeCCHHHHHHHHHHHcCC-------------CCcC-EEEECCCCcHHHHHHHHHcCC---
Confidence            3445566888888864  99999999998888766511             1556 888999999999999998888   


Q ss_pred             CeEEeeCCCC-CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccccc
Q psy12303        194 NCVEVPSDKR-GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKK  272 (480)
Q Consensus       194 ~v~~v~~~~~-~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~  272 (480)
                      +++.++++++ +.+|+++++++++++      +++|+.+   +++|...|+++|.++|++||+++++|+||+.+......
T Consensus        94 ~~v~vd~d~~~~~~d~~~le~~i~~~------tk~Iip~---~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~  164 (376)
T TIGR02379        94 KIVFVDIRPDTMNIDETLIESAITHR------TKAIVPV---HYAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGR  164 (376)
T ss_pred             EEEEEecCCCcCCCCHHHHHHhcCcC------ceEEEEe---CCCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCc
Confidence            8899999865 689999999998764      8888754   56899999999999999999999999999987542211


Q ss_pred             ccCcccCCCCCCccceeCcc--ccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCch
Q psy12303        273 YRHPRLTGIERADSVTWNPH--KLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIF  350 (480)
Q Consensus       273 ~~~~~~~~~~~~D~~~~s~h--K~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l  350 (480)
                       .   ...  ..|+.++|+|  |.+..+...|+++++++++...+......-.............+....+...-+..-+
T Consensus       165 -~---~g~--~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~  238 (376)
T TIGR02379       165 -A---LGS--IGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSEL  238 (376)
T ss_pred             -c---cCC--CCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHH
Confidence             1   111  2355556655  5555433567788887766554332110000000000000000000011112222333


Q ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC--C-eEEecCC-cee----EEEEEeecCccCCCchhhHHHHhh
Q psy12303        351 KLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD--K-FYLILEP-EMV----NVSFWYLPTRVRNMPHEKRLNILG  422 (480)
Q Consensus       351 ~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~--g-~~~~~~~-~~~----~v~f~~~~~~~~~~~~~~~~~~l~  422 (480)
                      .+...+.+  .+.+++..++.+++++++.+.|.. ++  + +++...+ ...    .+++.. +..   .+         
T Consensus       239 ~Aa~g~~q--L~~l~~~~~~r~~~~~~y~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~---~~---------  302 (376)
T TIGR02379       239 QAAYLWAQ--LEQADRINQDRLATWQLYQDALKP-LEEKGIIELPSIPNGCQHNAHMFYIKL-KDE---DD---------  302 (376)
T ss_pred             HHHHHHHH--HHHhHHHHHHHHHHHHHHHHHhcc-CCcCCeeeCCCCCCCCeeeeEEEEEEE-CCc---CC---------
Confidence            33333333  567888889999999999999987 54  2 3332112 111    122221 111   00         


Q ss_pred             hhhHHHHHHHHhcccEEEe-ee-----e----e---CCc--------ccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        423 EITPILKGRMMQAGTMMVG-YQ-----P----L---NDL--------PNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       423 ~~~~~i~~~l~~~g~~~~~-~~-----~----~---~~~--------~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                        ..++.+.|.++|+.... +.     +    .   .+.        ...+.+. +++..|++|++++++.|+++.
T Consensus       303 --r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP-~~~~l~~~~~~~i~~~i~~~~  375 (376)
T TIGR02379       303 --RNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLP-LYYGLSKEDQARVIQTICDYL  375 (376)
T ss_pred             --HHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEcc-CCCCCCHHHHHHHHHHHHHHh
Confidence              23566777777753210 00     0    0   000        2357777 789999999999999998864

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK03321 putative aminotransferase; Provisional

Probab=99.85  E-value=3.9e-19  Score=173.75  Aligned_cols=287  Identities=10%  Similarity=0.056  Sum_probs=192.2

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++.+++++|.+++++++|+|+++++..++.+...              ||+ .|+++.+.+..+...++..|.   +
T Consensus        60 ~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~~--------------~gd-~Vli~~p~y~~~~~~~~~~g~---~  121 (352)
T PRK03321         60 VELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATAG--------------PGD-EVIFAWRSFEAYPILVQVAGA---T  121 (352)
T ss_pred             HHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhcC--------------CCC-EEEeCCCCHHHHHHHHHHcCC---E
Confidence            3566678888898878899999999888777665432              556 788887887777777888887   8


Q ss_pred             eEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHH--cCcEEEeecccccccccccc
Q psy12303        195 CVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQK--YNMWLHVDAAWGGGLLLSKK  272 (480)
Q Consensus       195 v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~--~~~~l~vD~a~~~~~~~~~~  272 (480)
                      ++.+|.++++.+|+++++++++++      +++|++++++||+|.+.|.++|.++|++  +++++++|++|+.+......
T Consensus       122 ~~~v~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~  195 (352)
T PRK03321        122 PVQVPLTPDHTHDLDAMAAAITDR------TRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDV  195 (352)
T ss_pred             EEEccCCCCCCCCHHHHHHhhccC------CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCC
Confidence            889998877889999999988654      7899999999999999999999999997  59999999999876542111


Q ss_pred             cc-CcccCCCCCCccceeCccccCCC-cccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCch
Q psy12303        273 YR-HPRLTGIERADSVTWNPHKLMGT-LLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIF  350 (480)
Q Consensus       273 ~~-~~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l  350 (480)
                      .. ....... .--+++.|++|.++. +..+|+++. ++...+........+.                       ...+
T Consensus       196 ~~~~~~~~~~-~~vi~~~S~SK~~g~~GlRiG~~v~-~~~~~~~~~~~~~~~~-----------------------~s~~  250 (352)
T PRK03321        196 PDGLELVRDH-PNVVVLRTFSKAYGLAGLRVGYAVG-HPEVIAALRKVAVPFS-----------------------VNSL  250 (352)
T ss_pred             CcHHHHHhhC-CCEEEEecchHHhhhHHHhhhhhcC-CHHHHHHHHHhcCCCC-----------------------CCHH
Confidence            00 0011111 112455689999984 467899886 4555544332111110                       1233


Q ss_pred             HHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHH
Q psy12303        351 KLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILK  429 (480)
Q Consensus       351 ~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~  429 (480)
                      ...+++..+ ..+.+.+.+++..+..+.+.+.|.+ . ++.+ .++. +.+.+...+..                ..++.
T Consensus       251 ~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~-~-~~~~-~~~~-g~~i~i~l~~~----------------~~~~~  310 (352)
T PRK03321        251 AQAAAIASLAAEDELLERVDAVVAERDRVRAALRA-A-GWTV-PPSQ-ANFVWLPLGER----------------TADFA  310 (352)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcc-CCCC-CCEEEEeCCCC----------------HHHHH
Confidence            333333322 2344555666666667788899988 4 7765 2344 34333211110                23567


Q ss_pred             HHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        430 GRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       430 ~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.|.+.|+.+..   + + .+++|+++    .+.+++++++++|+++.+-
T Consensus       311 ~~l~~~gI~v~~---~-~-~~~iRi~~----~~~~~~~~~~~al~~~~~~  351 (352)
T PRK03321        311 AAAAEAGVVVRP---F-A-GEGVRVTI----GAPEENDAFLRAARAWRAG  351 (352)
T ss_pred             HHHHHCCEEEEc---c-C-CCcEEEee----CCHHHHHHHHHHHHHHhcc
Confidence            778788855433   2 3 35799994    4899999999999987654

>PLN02368 alanine transaminase

Probab=99.85  E-value=7.7e-19  Score=172.99  Aligned_cols=278  Identities=11%  Similarity=-0.000  Sum_probs=190.6

Q ss_pred             hHHhHHHHHHHHc--CcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhc
Q psy12303         85 VVSMAGEWLIATA--NTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEK  160 (480)
Q Consensus        85 ~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~  160 (480)
                      ++..+.+.+....  +.....|....+..++.+++.+++.+..|.  +++++++|+|+++++..++.+....        
T Consensus        82 p~~~i~~a~~~l~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~--------  153 (407)
T PLN02368         82 PADAIARAKHYLSLTSGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRG--------  153 (407)
T ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCC--------
Confidence            3444445544432  222345665566678888999999888784  5678999999999999888877521        


Q ss_pred             CCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccc
Q psy12303        161 GLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG  238 (480)
Q Consensus       161 g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G  238 (480)
                           ||+ .|+++.++|+.+...+...|.   +++.+|+++  ++.+|+++|++++++...++.+++++++++|+||||
T Consensus       154 -----pGd-~Vli~~P~Y~~y~~~~~~~g~---~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG  224 (407)
T PLN02368        154 -----EKD-GVLVPVPQYPLYSATISLLGG---TLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTG  224 (407)
T ss_pred             -----CCC-EEEEeCCCCccHHHHHHHcCC---EEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCC
Confidence                 556 788999999999999999997   788898875  478999999999986544444589999999999999


Q ss_pred             cccC---hHHHHHHHHHcCcEEEeeccccccccccc-cccC--cccCCC----C-C-CccceeCccccC-C-CcccceEE
Q psy12303        239 AFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSK-KYRH--PRLTGI----E-R-ADSVTWNPHKLM-G-TLLQCSTI  304 (480)
Q Consensus       239 ~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~-~~~~--~~~~~~----~-~-~D~~~~s~hK~~-~-~p~~~g~~  304 (480)
                      .+.+   +++|.++|++||+|+++|++|+...+... ....  .....+    + . --+++.|++|.+ + .+..+|++
T Consensus       225 ~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~  304 (407)
T PLN02368        225 QCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYF  304 (407)
T ss_pred             ccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEE
Confidence            9966   67788889999999999999988764221 1100  001111    1 1 124556899997 3 55789998


Q ss_pred             EE--eCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhc------------HHHHHHHHHH
Q psy12303        305 HF--KQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG------------DEGFEKQIDR  370 (480)
Q Consensus       305 ~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g------------~~~~~~~~~~  370 (480)
                      ++  .++..+....... . ...                 +   ...+..+++...+.            .+...++.+.
T Consensus       305 i~~~~~~~li~~~~~~~-~-~~~-----------------~---~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~  362 (407)
T PLN02368        305 EMTNIPPKTVEEIYKVA-S-IAL-----------------S---PNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILES  362 (407)
T ss_pred             EEeCCCHHHHHHHHHHh-c-ccC-----------------C---CCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHH
Confidence            85  3445554433211 0 000                 0   12233333333331            1122446778


Q ss_pred             HHHHHHHHHHHHhcCCCCeEEecCCceeEEEEE
Q psy12303        371 LMELAEYMVKKIKSMPDKFYLILEPEMVNVSFW  403 (480)
Q Consensus       371 ~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~  403 (480)
                      ..+.++.+.+.|++ ++|+.+ ..|+++.++|.
T Consensus       363 ~~~rr~~~~~~L~~-~~g~~~-~~P~Gafy~~~  393 (407)
T PLN02368        363 LRRRARMMTDGFNS-CKNVVC-NFTEGAMYSFP  393 (407)
T ss_pred             HHHHHHHHHHHHhC-CCCeEe-CCCCeeeEecc
Confidence            88899999999999 899987 47888888774

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.85  E-value=7.6e-18  Score=162.86  Aligned_cols=318  Identities=16%  Similarity=0.152  Sum_probs=216.1

Q ss_pred             HHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        112 LMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      +...++.+.|.+++..+ ....+|+++||+||..|++.||..       .|.     ..+|-.....|.....++.+.|-
T Consensus        99 e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~-------Tgr-----~~viaf~~afHG~T~galslT~~  166 (447)
T COG0160          99 EPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAY-------TGR-----PGVIAFDGAFHGRTLGALSLTGS  166 (447)
T ss_pred             hhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHH-------hCC-----CcEEEECCcccccchhhHHhccC
Confidence            44445666677776652 456999999999999999999986       232     22666677778888888777653


Q ss_pred             C----------CCCeEEeeCCCCCC------------CCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hH
Q psy12303        191 G----------TDNCVEVPSDKRGR------------LIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IE  244 (480)
Q Consensus       191 ~----------~~~v~~v~~~~~~~------------~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~  244 (480)
                      .          ...+..+|....++            -..+.++..+......+..++++++...+...|.+.|    ++
T Consensus       167 ~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~  246 (447)
T COG0160         167 KPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLK  246 (447)
T ss_pred             ccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHH
Confidence            1          12367777653221            1234466666666556677999999999999999866    89


Q ss_pred             HHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccc
Q psy12303        245 EIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLF  324 (480)
Q Consensus       245 ~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~  324 (480)
                      ++.++|++||+.+|+|++|.|+......+.+ ...|+ ..|++|+  .|.++++.+.|.++.+.. +.. .......+. 
T Consensus       247 ~l~~~~~~~gillI~DEVQtG~GRTG~~fa~-E~~gv-~PDivt~--aK~ig~G~Pl~avv~r~e-i~~-~~~g~~~~T-  319 (447)
T COG0160         247 ALRKLCREHGILLIADEVQTGFGRTGKMFAF-EHFGV-EPDIVTL--AKSLGGGLPLSAVVGRAE-IMD-WPPGGHGGT-  319 (447)
T ss_pred             HHHHHHHHcCCEEEEeccccCCCccccchhh-hhcCC-CCCEEEe--cccccCCCceeEEeccHH-hcc-cCCcccCCC-
Confidence            9999999999999999999999988777777 67777 7999994  599999899999987543 332 111111110 


Q ss_pred             ccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCce--eEEEE
Q psy12303        325 MQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEM--VNVSF  402 (480)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~--~~v~f  402 (480)
                                       -.|.+.++.+..++|+.+-.+   .+.++..++.+++.+.|.+....+.++++..+  .++-.
T Consensus       320 -----------------f~GNpva~Aaa~AvL~vie~e---~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~gi  379 (447)
T COG0160         320 -----------------FGGNPVACAAALAVLDVIEEE---NLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGV  379 (447)
T ss_pred             -----------------CCcCHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEE
Confidence                             123323444444555544333   56788888888888888762133445555443  23333


Q ss_pred             EeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        403 WYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+..+.-....+    .   ++..++..++.++|.++.+.+..   .+++|+. +....+++++|..++.|++.+++
T Consensus       380 E~v~d~~t~~p~----~---~~~~~i~~~~~~~Glil~~~G~~---~nviRi~-PPL~is~e~~d~~l~il~~al~~  445 (447)
T COG0160         380 ELVKDRDTKEPD----A---ELAAKIVARAFERGLLLLTCGPH---GNVLRIL-PPLTISDEELDEGLDILEEALKE  445 (447)
T ss_pred             EEecCCCCCCCC----H---HHHHHHHHHHHHcCCEEeccCCC---CcEEEEe-CCcccCHHHHHHHHHHHHHHHHh
Confidence            333211000011    1   12467889999999876665332   4799999 99999999999999999988764

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.85  E-value=4.9e-19  Score=173.17  Aligned_cols=308  Identities=15%  Similarity=0.088  Sum_probs=197.2

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHH
Q psy12303        107 APVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAA  186 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~  186 (480)
                      ++...++|++    +++++|.+.  ++.+++||.|+..++.++--.             ||+ +|+++..++++...++.
T Consensus        24 g~~~~~fE~~----~a~~~g~~~--~~~~~sgt~Al~~al~~l~~~-------------~gd-eVi~p~~t~~~~~~ai~   83 (363)
T PF01041_consen   24 GPYVEEFEKE----FAEYFGVKY--AVAVSSGTSALHLALRALGLG-------------PGD-EVIVPAYTFPATASAIL   83 (363)
T ss_dssp             SHHHHHHHHH----HHHHHTSSE--EEEESSHHHHHHHHHHHTTGG-------------TTS-EEEEESSS-THHHHHHH
T ss_pred             CHHHHHHHHH----HHHHhCCCe--EEEeCChhHHHHHHHHhcCCC-------------cCc-eEecCCCcchHHHHHHH
Confidence            5666677766    788888765  999999999999999875322             556 89999999999999999


Q ss_pred             HcCCCCCCeEEeeCC-CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccc
Q psy12303        187 VCGLGTDNCVEVPSD-KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGG  265 (480)
Q Consensus       187 ~~g~~~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~  265 (480)
                      .+|+   ++++++++ +++.+|++++++++++.      +++|++++.   .|...|+++|.++|+++|++++.|+||+.
T Consensus        84 ~~G~---~pv~~Di~~~~~~id~~~~~~~i~~~------t~ai~~~h~---~G~~~d~~~i~~~~~~~~i~lIeD~a~a~  151 (363)
T PF01041_consen   84 WAGA---EPVFVDIDPETLNIDPEALEKAITPK------TKAILVVHL---FGNPADMDAIRAIARKHGIPLIEDAAQAF  151 (363)
T ss_dssp             HTT----EEEEE-BETTTSSB-HHHHHHHHHTT------EEEEEEE-G---GGB---HHHHHHHHHHTT-EEEEE-TTTT
T ss_pred             Hhcc---EEEEEeccCCcCCcCHHHHHHHhccC------ccEEEEecC---CCCcccHHHHHHHHHHcCCcEEEcccccc
Confidence            9999   88999998 57999999999999987      888887665   79899999999999999999999999999


Q ss_pred             cccccccccCcccCCCCCCccceeCcc--ccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccC
Q psy12303        266 GLLLSKKYRHPRLTGIERADSVTWNPH--KLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQC  343 (480)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~D~~~~s~h--K~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  343 (480)
                      |...-..     .-|. ..|+.++|+|  |.+.+ ...|+++++++++...+......-.... ..  ..+.... .+..
T Consensus       152 g~~~~g~-----~~G~-~gd~~~fSf~~~K~i~~-geGG~v~~~~~~~~~~~~~~~~~g~~~~-~~--~~~~~~~-~~g~  220 (363)
T PF01041_consen  152 GARYKGR-----PVGS-FGDIAIFSFHPTKIITT-GEGGAVVTNDPELAERARALRNHGRSRD-AF--RRYRHEL-PPGY  220 (363)
T ss_dssp             T-EETTE-----ETTS-SSSEEEEESSTTSSS-S-SS-EEEEESTHHHHHHHHHHTBTTEETS-EC--STTEESS-SS--
T ss_pred             CceeCCE-----eccC-CCCceEecCCCCCCCcC-CCCeeEEecHHHHHHHhhhhhccCcCcc-cc--ccccccc-cCCc
Confidence            8754322     1121 3477666664  88854 4458888888776554432111111000 00  0000000 0111


Q ss_pred             CCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeE------EEEEeecCccCCCchhhH
Q psy12303        344 GRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVN------VSFWYLPTRVRNMPHEKR  417 (480)
Q Consensus       344 ~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~------v~f~~~~~~~~~~~~~~~  417 (480)
                      .-+...+.+...+.+  .+.+++.+++.+++++++.+.|.. .+++.....+....      +.+++.+...  .+    
T Consensus       221 n~rm~~~~AAigl~Q--L~~L~~~~~~R~~~a~~y~~~L~~-~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~--~~----  291 (363)
T PF01041_consen  221 NFRMSELQAAIGLAQ--LKRLDEIIARRRENAQRYREALAG-IPGIKPPPIPDGAERSSYYRFPIRLPDEAL--AD----  291 (363)
T ss_dssp             B-B-BHHHHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHTT-GTTEEEEGCGTTTEEBCESSEEEEETCCGC--ST----
T ss_pred             ccccHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHhc-CCCccccccccccccccccccccccccccc--ch----
Confidence            222344444444444  567899999999999999999999 89987765433221      2222211110  00    


Q ss_pred             HHHhhhhhHHHHHHHHhcccEEEeee--ee-------------CCc--------ccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        418 LNILGEITPILKGRMMQAGTMMVGYQ--PL-------------NDL--------PNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       418 ~~~l~~~~~~i~~~l~~~g~~~~~~~--~~-------------~~~--------~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                             ..++.+.|.+.|+-.....  +.             .+.        ...+.+. +++..+++|+++++++|+
T Consensus       292 -------rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP-~~~~lt~edv~~I~~~ir  363 (363)
T PF01041_consen  292 -------RDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLP-IHPRLTEEDVDYIAEAIR  363 (363)
T ss_dssp             -------HHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEE-HSTTSCHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECc-CCCCCCHHHHHHHhhccC
Confidence                   2467788888885422211  00             000        2457777 889999999999999885

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PLN02672 methionine S-methyltransferase

Probab=99.85  E-value=1.6e-18  Score=183.87  Aligned_cols=319  Identities=12%  Similarity=0.114  Sum_probs=204.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCC---CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH
Q psy12303        111 ILMETVVLEKMRQIIGWQGG---DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV  187 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~---~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~  187 (480)
                      .++.+.+++|+++..|++..   ++++++|+++++..++.+..+              ||+ .|+++.++|+.+..+++.
T Consensus       733 pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~--------------pGD-~VLVp~PtY~~Y~~~a~~  797 (1082)
T PLN02672        733 TDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQ--------------EGG-TLCFPAGSNGTYVSAAKF  797 (1082)
T ss_pred             hHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcC--------------CCC-EEEEeCCChHHHHHHHHH
Confidence            45568899999999998653   688888888888777777654              556 888999999999999999


Q ss_pred             cCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCC-CccccccC---hHHHHHHHHHcCcEEEeec
Q psy12303        188 CGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGT-TVLGAFDP---IEEIADICQKYNMWLHVDA  261 (480)
Q Consensus       188 ~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~-~~~G~~~~---l~~I~~i~~~~~~~l~vD~  261 (480)
                      .|.   +++.+|+++  ++.+|.++|++++++.     ...+|++++|+ ||||.+.+   +++|.++|++||++|++|+
T Consensus       798 ~Ga---~vv~Vpl~~e~gf~lD~d~Le~al~~~-----~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDE  869 (1082)
T PLN02672        798 LKA---NFRRIPTKSSDGFKLTAKTLASTLETV-----KKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDT  869 (1082)
T ss_pred             cCC---EEEEEecccccCCCCCHHHHHHHhccC-----CCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeC
Confidence            998   889999863  5789999999998642     13478888887 99999965   7888888999999999999


Q ss_pred             cccccccccccc-cC---cccCCCCC-----CccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccC
Q psy12303        262 AWGGGLLLSKKY-RH---PRLTGIER-----ADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYD  331 (480)
Q Consensus       262 a~~~~~~~~~~~-~~---~~~~~~~~-----~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  331 (480)
                      +|+...+..+.. ..   +.......     .-+++.|++|.++.| ..+|+++..++.+....... ..+....     
T Consensus       870 aYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~l~~~-~~~s~~~-----  943 (1082)
T PLN02672        870 SFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDAFHSA-PGLSRPH-----  943 (1082)
T ss_pred             CCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHHHHHh-hhhcCCC-----
Confidence            998655422110 00   01111111     113455888665554 78999987665455443321 0100000     


Q ss_pred             cccCCCCccccCCCCCCchHHHHHHHHh----c--HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEee
Q psy12303        332 VRYDTGDKVIQCGRHNDIFKLWLQWRAK----G--DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYL  405 (480)
Q Consensus       332 ~~~~~~~~~~~~~r~~~~l~~~~~l~~~----g--~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~  405 (480)
                                    .....++...+..+    +  .+.+.+..+...+.++++.+.|++ . |+.+ .+|+.+.++|...
T Consensus       944 --------------~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~-~-Gi~v-~~PeGGFfLwl~l 1006 (1082)
T PLN02672        944 --------------STLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEA-C-GWDV-LEPQGGISMVAKP 1006 (1082)
T ss_pred             --------------cHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH-C-CCeE-ecCCcEEEEEEEc
Confidence                          01111222222211    1  234566677788899999999999 4 8876 4677777766432


Q ss_pred             cCccC---CCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        406 PTRVR---NMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       406 ~~~~~---~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      +....   ..+..+....+..-..++.+.|.++..+++.++.+.+..+++|+++.   .+++++++.+++|+++.+
T Consensus      1007 ~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIsfa---~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672       1007 SAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFSFA---LEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred             cccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEEec---CCHHHHHHHHHHHHHHHH
Confidence            21100   00000000000001246778887764455555555454689999944   478899999999988653

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.85  E-value=9.8e-19  Score=170.37  Aligned_cols=218  Identities=12%  Similarity=0.161  Sum_probs=157.7

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH-
Q psy12303        107 APVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA-  185 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~-  185 (480)
                      .|....+|    +.++++.|..  ++++++||++|+..++.+..+              ||+ +|+++...|..+...+ 
T Consensus        60 npt~~~Le----~~iA~le~~~--~~~~~~sG~~Ai~~~l~all~--------------~GD-~Vvv~~~~Y~~t~~l~~  118 (394)
T PRK09028         60 TPTHFAFQ----AAIVELEGGA--GTALYPSGAAAISNALLSFLK--------------AGD-HLLMVDSCYEPTRDLCD  118 (394)
T ss_pred             CchHHHHH----HHHHHHhCCC--cEEEECCHHHHHHHHHHHHhC--------------CCC-EEEEECCCcHHHHHHHH
Confidence            45444555    4477776664  489999999999998887654              556 6777777786666543 


Q ss_pred             ---HHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecc
Q psy12303        186 ---AVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAA  262 (480)
Q Consensus       186 ---~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a  262 (480)
                         ...|+   ++.+++.+     +.+.++++++++      |++|++++++|++|.+.|+++|+++|+++|++++||++
T Consensus       119 ~~l~~~Gi---~v~~v~~~-----~~e~l~~~l~~~------TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t  184 (394)
T PRK09028        119 KILKGFGI---ETTYYDPM-----IGEGIRELIRPN------TKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNT  184 (394)
T ss_pred             Hhhhhcce---EEEEECCC-----CHHHHHHhcCcC------ceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence               23444   66666543     567788888665      89999999999999999999999999999999999999


Q ss_pred             ccccccccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcc
Q psy12303        263 WGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKV  340 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  340 (480)
                      |+.+.. .....+       ++|+++.|.|||++++..  .|++ +.++.........  ..                  
T Consensus       185 ~a~p~~-~~Pl~~-------GaDivv~S~tK~l~Gh~d~~~G~~-~~~~~~~~~l~~~--~~------------------  235 (394)
T PRK09028        185 WASPIN-SRPFEM-------GVDISIQAATKYIVGHSDVMLGTA-TANEKHWDQLREH--SY------------------  235 (394)
T ss_pred             cccccc-CCcccc-------CceEEEEeCCeEecCCCCEEEEEE-ECCHHHHHHHHHH--HH------------------
Confidence            998753 333355       899999999999998743  3444 4555433322100  00                  


Q ss_pred             ccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        341 IQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       341 ~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                       ..|.......+|+.++.  .+.+.-+++++.+++..+.+.|++ +|.++-+
T Consensus       236 -~~G~~~~p~~a~l~~rg--l~TL~lR~~~~~~na~~la~~L~~-~p~v~~V  283 (394)
T PRK09028        236 -LMGQCTSPDDVYLAMRG--LRTLGVRLAQHEKNALKVANWLAT-RPEVDHV  283 (394)
T ss_pred             -hcCCCCCHHHHHHHHcc--cCcHHHHHHHHHHHHHHHHHHHhc-CCCccEE
Confidence             01222456677876654  667888999999999999999999 8887543

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.85  E-value=1.7e-18  Score=172.46  Aligned_cols=312  Identities=13%  Similarity=0.074  Sum_probs=191.2

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHhC--CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCch
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQIIG--WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHY  179 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~  179 (480)
                      ..|...++..++.+.+++++.+..|  ++++++++|+|+++++...+ .+..              ||+ .|++..++|+
T Consensus        70 ~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~-~~~~--------------~gd-~V~v~~P~Y~  133 (409)
T PRK07590         70 RGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNIL-DIFG--------------PDN-TIAVTDPVYP  133 (409)
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHH-HhcC--------------CCC-EEEEeCCCCc
Confidence            4565566777788888888766655  46789999999999877643 2222              556 7888999999


Q ss_pred             hHHHHHHHcCCCCC--------CeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHH
Q psy12303        180 SVRSCAAVCGLGTD--------NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIAD  248 (480)
Q Consensus       180 s~~~~~~~~g~~~~--------~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~  248 (480)
                      .+...++..|....        +++.+|.+.++.+.++ +.+   +      .+++|++++|+||||.+.+   +++|.+
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d-~~~---~------~~k~i~l~nP~NPTG~~~s~~~~~~l~~  203 (409)
T PRK07590        134 VYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPE-LPE---E------KVDIIYLCFPNNPTGTVLTKEQLKAWVD  203 (409)
T ss_pred             chHHHHHHcCCcccccccccccceeEeecccccCCccc-Ccc---c------CceEEEEeCCCCCcCCcCCHHHHHHHHH
Confidence            99999999987210        2788888743322222 111   1      3889999999999999976   577888


Q ss_pred             HHHHcCcEEEeeccccccccccccccCcccCCCCC---CccceeCccccCC-CcccceEEEEeCchhhHhhhcCC-----
Q psy12303        249 ICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIER---ADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMS-----  319 (480)
Q Consensus       249 i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~---~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~-----  319 (480)
                      +|++||++|++|++|+......... . .+..++.   .-+++.|++|.++ .+..+|+++.. +..+.......     
T Consensus       204 ~a~~~~~~iI~De~Y~~~~~~~~~~-~-~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~-~~li~~~~~~~~~~~~  280 (409)
T PRK07590        204 YAKENGSLILFDAAYEAFISDPSLP-H-SIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVP-KELKGKTSDGEGVSLN  280 (409)
T ss_pred             HHHHcCeEEEEEccchhhccCCCCC-c-chhhCCCcccceEEEecCccccCCcCceeEEEEcC-HHHhhhccccchhhhH
Confidence            8999999999999998754321110 1 1222212   2245679999996 55789998864 34433110000     


Q ss_pred             cccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh---cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc
Q psy12303        320 AEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK---GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE  396 (480)
Q Consensus       320 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~---g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~  396 (480)
                      ..+......           ..   .....+...++...+   +...+++..++..+.++.+.+.|++ . ++++. +|.
T Consensus       281 ~~~~~~~~~-----------~~---~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~-~~~~~-~~~  343 (409)
T PRK07590        281 SLWNRRQST-----------KF---NGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLES-A-GFEVY-GGV  343 (409)
T ss_pred             HHHHHHHhh-----------cc---cCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHh-c-CCcee-cCC
Confidence            000000000           00   001222233332222   3456677778888889999999999 4 77764 555


Q ss_pred             eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        397 MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       397 ~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                      .+.+.|...+....              ..++...+.+ .|+++.....+.. ..+++|+++   ..++++++..++.|.
T Consensus       344 g~~f~wi~~~~~~~--------------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~---~~~~~~l~~~l~rl~  406 (409)
T PRK07590        344 NAPYIWVKTPDGMS--------------SWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSA---FGSRENVLEAMERIK  406 (409)
T ss_pred             cceEEEEECCCCCC--------------HHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEc---cCCHHHHHHHHHHHH
Confidence            56555543332211              1345566665 4544333222211 146999993   347899999999987


Q ss_pred             Hh
Q psy12303        475 RL  476 (480)
Q Consensus       475 ~~  476 (480)
                      ++
T Consensus       407 ~~  408 (409)
T PRK07590        407 KA  408 (409)
T ss_pred             hh
Confidence            65

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.84  E-value=2e-18  Score=171.15  Aligned_cols=297  Identities=13%  Similarity=0.095  Sum_probs=183.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC-ceEEEecCCCchhHHHHHHHcCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG-QLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g-~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      ....++.+.++++.+.+  .++|+++||+|+..|++++|....   ..+|..  +| +.+|......|.+...++...+.
T Consensus        82 ~~~~~l~~~l~~~~~~~--~~~~~~SGseA~e~Alk~a~~~~~---~~~g~~--~~r~~ii~~~~~~HG~~~~~~~~~~~  154 (396)
T PRK04073         82 DQLGPWYEKVAKLTGKD--MVLPMNTGAEAVETAIKAARRWAY---DVKGVE--PNKAEIIACEGNFHGRTMAAVSLSSE  154 (396)
T ss_pred             HHHHHHHHHHHhcCCCC--eEEEcCChHHHHHHHHHHHHHHhh---hccCCC--CCCCEEEEECCCcCCCCHHHHhhcCC
Confidence            34455667777777653  699999999999999999986310   111211  12 33555556678777666665542


Q ss_pred             CC---------CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEE
Q psy12303        191 GT---------DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWL  257 (480)
Q Consensus       191 ~~---------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l  257 (480)
                      ..         ..+..+|.+     |++++++++++.      +++|+++.+++++|.+.|    +++|.++|++||+++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~i~~~------~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~ll  223 (396)
T PRK04073        155 EEYKRGFGPMLPGIKKIPYG-----DLEALKAAITPN------TAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLF  223 (396)
T ss_pred             cccccCCCCCCCCceEeCCC-----CHHHHHHhcccC------eEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence            10         112334433     788998888654      899999999999999865    899999999999999


Q ss_pred             EeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccCC
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDT  336 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  336 (480)
                      ++|++|.+.......+.. ...++ .+|++++  .|.++++ .++|+++.+ ++..+......     .          .
T Consensus       224 i~DEv~~g~g~~g~~~~~-~~~~~-~pdi~~~--sK~lg~gg~~ig~~~~~-~~i~~~~~~~~-----~----------~  283 (396)
T PRK04073        224 IADEIQTGLGRTGKLFAC-DWDNV-TPDMYIL--GKALGGGVFPISCVAAN-RDILGVFTPGS-----H----------G  283 (396)
T ss_pred             EEecchhCCCcCcHHHHh-hhcCC-CCCEEEe--cccccCCCCcceEEEEc-HHHHhhhcCCC-----C----------C
Confidence            999999975432211111 12233 5787774  6998876 678888764 44443321100     0          0


Q ss_pred             CCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC--CCeEEecCCceeEEEEEeecCccCCCch
Q psy12303        337 GDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP--DKFYLILEPEMVNVSFWYLPTRVRNMPH  414 (480)
Q Consensus       337 ~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~--~g~~~~~~~~~~~v~f~~~~~~~~~~~~  414 (480)
                      .++   ++.+....++.++|+.+..   ....++..++.++|.+.|++ +  +.+..+ ++....+.+.+ +..      
T Consensus       284 ~t~---~~~~~~~aaa~aaL~~~~~---~~l~~~~~~~~~~l~~~L~~-l~~~~i~~~-~~~g~~~~~~~-~~~------  348 (396)
T PRK04073        284 STF---GGNPLACAVSIAALEVLEE---EKLPERSLELGEYFKEQLKE-IDNPMIKEV-RGRGLFIGVEL-NEP------  348 (396)
T ss_pred             CCC---CCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHh-hcCCcccce-ecceEEEEEEe-cch------
Confidence            000   1111122222333433222   23457777889999999987 4  222221 23333333322 110      


Q ss_pred             hhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        415 EKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       415 ~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                                ..++.++|.++|.++ .+   .+ .+++|++ ++...|++||++++++|++++
T Consensus       349 ----------~~~~~~~l~~~Gv~~-~~---~~-~~~iRi~-p~l~~t~e~i~~~~~~l~~~l  395 (396)
T PRK04073        349 ----------ARPYCEALKEEGLLC-KE---TH-ETVIRFA-PPLVITKEELDWAFEKIKAVL  395 (396)
T ss_pred             ----------HHHHHHHHHHCCeEE-ec---CC-CCEEEEE-CCcccCHHHHHHHHHHHHHHh
Confidence                      235667788888554 32   12 4699999 888999999999999998864

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.84  E-value=1.3e-18  Score=171.70  Aligned_cols=221  Identities=13%  Similarity=0.109  Sum_probs=159.0

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH-
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC-  184 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~-  184 (480)
                      ..|...++|+.    ++++.|.+  .+++++||+.|+..++.+...              ||+ .|+++...|.+.... 
T Consensus        62 ~~p~~~~Le~~----iA~~~g~~--~~l~~~sG~~Ai~~al~~ll~--------------~Gd-~Vl~~~~~y~~~~~~~  120 (400)
T PRK06234         62 GNPTSTEVENK----LALLEGGE--AAVVAASGMGAISSSLWSALK--------------AGD-HVVASDTLYGCTFALL  120 (400)
T ss_pred             CCccHHHHHHH----HHHHhCCC--cEEEEcCHHHHHHHHHHHHhC--------------CCC-EEEEecCccchHHHHH
Confidence            45666666655    77888875  479999999999888876643              556 777887777664433 


Q ss_pred             ---HHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHc--CcEEEe
Q psy12303        185 ---AAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY--NMWLHV  259 (480)
Q Consensus       185 ---~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~--~~~l~v  259 (480)
                         +...|+   ++++++.+     |+++++++++++      +++|++++++||+|.+.|+++|.++|+++  |+++++
T Consensus       121 ~~~~~~~G~---~v~~vd~~-----d~e~l~~~i~~~------tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~liv  186 (400)
T PRK06234        121 NHGLTRYGV---EVTFVDTS-----NLEEVRNALKAN------TKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFV  186 (400)
T ss_pred             HHHHhhCCe---EEEEECCC-----CHHHHHHHhccC------CeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEE
Confidence               455666   77777754     899999999765      89999999999999999999999999997  999999


Q ss_pred             eccccccccccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCC
Q psy12303        260 DAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       260 D~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  337 (480)
                      |++|+.+....+ ...       ++|+++.|++|+++++..  .|+++. +++...........+.              
T Consensus       187 Dea~~~~~~~~~-l~~-------g~Divv~S~sK~l~g~g~~~gG~v~~-~~~~~~~l~~~~~~~~--------------  243 (400)
T PRK06234        187 DNTFCTPYIQRP-LQL-------GADVVVHSATKYLNGHGDVIAGFVVG-KEEFINQVKLFGIKDM--------------  243 (400)
T ss_pred             ECCCCchhcCCc-hhh-------CCcEEEeeccccccCCCCceeEEEEe-cHHHHHHHHHHHHHHh--------------
Confidence            999987754322 122       789999999999987542  466664 4444433221100000              


Q ss_pred             CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        338 DKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       338 ~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                           .+.......+|..++.  .+.+..++++..+++.++.+.|++ +|.+.-+
T Consensus       244 -----~g~~l~p~~a~l~~~~--l~tl~~r~~~~~~na~~~a~~L~~-~~~V~~V  290 (400)
T PRK06234        244 -----TGSVIGPFEAFLIIRG--MKTLQIRMEKHCKNAMKVAKFLES-HPAVEKV  290 (400)
T ss_pred             -----cCCCCCHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHHHHHc-CCCeeEE
Confidence                 1112345566666654  556678888999999999999999 7877543

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.84  E-value=1.3e-18  Score=170.40  Aligned_cols=217  Identities=15%  Similarity=0.125  Sum_probs=158.7

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHH-HcCCCCCC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAA-VCGLGTDN  194 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~-~~g~~~~~  194 (480)
                      ++.+.++++.|.+  .+++++||++|+..++.+...              ||+ .|+++...|++....+. ..+.+..+
T Consensus        56 ~L~~~lA~l~g~~--~~i~~~sg~~Ai~~~l~~l~~--------------~GD-~Vl~~~~~y~~~~~~~~~~~~~~gi~  118 (386)
T PRK08045         56 VVQRALAELEGGA--GAVLTNTGMSAIHLVTTVFLK--------------PGD-LLVAPHDCYGGSYRLFDSLAKRGCYR  118 (386)
T ss_pred             HHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHHcC--------------CCC-EEEEcCCCcHHHHHHHHHHHhhCCeE
Confidence            3455688888864  499999999999988876643              556 78888888886554443 33222225


Q ss_pred             eEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccccccc
Q psy12303        195 CVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYR  274 (480)
Q Consensus       195 v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~  274 (480)
                      +..++     ..|+++++++++++      +++|++++++||+|.+.|+++|.++|+++|+++++|++|+.+....+ ..
T Consensus       119 v~~vd-----~~d~e~l~~~l~~~------tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~p-l~  186 (386)
T PRK08045        119 VLFVD-----QGDEQALRAALAEK------PKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNP-LA  186 (386)
T ss_pred             EEEeC-----CCCHHHHHHhcccC------CeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCc-hh
Confidence            55553     25899999988764      89999999999999999999999999999999999999987754322 23


Q ss_pred             CcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHH
Q psy12303        275 HPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL  352 (480)
Q Consensus       275 ~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~  352 (480)
                      .       ++|+++.|++||++++.+  .|+++++++++....... ..++                    +-....+..
T Consensus       187 ~-------gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~-~~~~--------------------g~~~~p~~~  238 (386)
T PRK08045        187 L-------GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWW-ANNI--------------------GVTGGAFDS  238 (386)
T ss_pred             h-------CCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHH-HHhc--------------------CCCCCHHHH
Confidence            3       789999999999997765  576666666544332100 0011                    111355677


Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        353 WLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       353 ~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      |+.++.  .+.+..+++++.+++..+.+.|++ +|.++-+
T Consensus       239 ~l~~rg--l~tl~~R~~~~~~na~~la~~L~~-~p~v~~V  275 (386)
T PRK08045        239 YLLLRG--LRTLVPRMELAQRNAQAIVKYLQT-QPLVKKL  275 (386)
T ss_pred             HHHHhh--hccHHHHHHHHHHHHHHHHHHHHc-CCCEeEE
Confidence            777765  456888999999999999999999 8888644

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.84  E-value=7.6e-19  Score=169.79  Aligned_cols=275  Identities=12%  Similarity=0.053  Sum_probs=182.6

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++++++++|.++.++++|+|+++++..+..+ ..              + + .|++..++|.++...+...|+   +
T Consensus        50 ~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~-l~--------------~-g-~vl~~~p~y~~~~~~~~~~g~---~  109 (330)
T TIGR01140        50 DELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRL-LA--------------P-G-RVLVLAPTYSEYARAWRAAGH---E  109 (330)
T ss_pred             HHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH-hC--------------C-C-eEEEeCCCcHHHHHHHHHcCC---E
Confidence            5677889999999878899999999988775433 22              3 3 477778899999999998887   7


Q ss_pred             eEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        195 CVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       195 v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                      ++.++       |++++++++++       +++|++++|+||+|.+.+   +++|+++|+++|+++++|++|..+....+
T Consensus       110 ~~~~~-------d~~~l~~~~~~-------~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~  175 (330)
T TIGR01140       110 VVELP-------DLDRLPAALEE-------LDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDAS  175 (330)
T ss_pred             EEEeC-------CHHHHHhhccc-------CCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccc
Confidence            77776       78889888732       568899999999999988   66677888999999999999986653211


Q ss_pred             cccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCch
Q psy12303        272 KYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIF  350 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l  350 (480)
                      . .  ...+..+.++++.|++|+++.| .++|+++.++ +.+.........+.                       ...+
T Consensus       176 ~-~--~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~-~~~~~l~~~~~~~~-----------------------~s~~  228 (330)
T TIGR01140       176 L-A--PQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHP-ALLARLREALGPWT-----------------------VNGP  228 (330)
T ss_pred             h-h--hHhccCCCEEEEEecchhhcCchhhhhheeCCH-HHHHHHHhcCCCCC-----------------------chHH
Confidence            1 0  0111114467888999999844 6789988754 44444332211110                       1222


Q ss_pred             HHHHHHHHhcH-HHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHH
Q psy12303        351 KLWLQWRAKGD-EGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILK  429 (480)
Q Consensus       351 ~~~~~l~~~g~-~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~  429 (480)
                      ...++...+.. +..+...++..++.+++.+.|++ ++.+++.  |..+.+.+.-.+ .                ..++.
T Consensus       229 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~--~~~~~f~~~~~~-~----------------~~~l~  288 (330)
T TIGR01140       229 ARAAGRAALADTAWQAATRARLAAERARLAALLAR-LGGLEVV--GGTALFLLVRTP-D----------------AAALH  288 (330)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-CCCceEC--CCCCeEEEEEcC-C----------------HHHHH
Confidence            33333333322 33466678888899999999999 7667653  334444332111 0                13567


Q ss_pred             HHHHhcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        430 GRMMQAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       430 ~~l~~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                      +.|.+.|+++.....+.+ ..+++|+++.   +..++ ++++++|+
T Consensus       289 ~~l~~~gi~v~pg~~f~~~~~~~iRi~~~---~~~~~-~~~~~~l~  330 (330)
T TIGR01140       289 EALARRGILIRDFDNFPGLDPRYLRFALP---TDEEN-DRLEEALA  330 (330)
T ss_pred             HHHHHCCEEEEECCCCCCCCCCEEEEEec---CHHHH-HHHHHhhC
Confidence            888888855554333322 1479999943   23355 88887763

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PLN02509 cystathionine beta-lyase

Probab=99.84  E-value=9e-19  Score=173.59  Aligned_cols=216  Identities=14%  Similarity=0.095  Sum_probs=156.8

Q ss_pred             HHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH----HHc
Q psy12303        113 METVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA----AVC  188 (480)
Q Consensus       113 ~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~----~~~  188 (480)
                      ..+++.++++++.|.+.  +++++||+.|+..++ .+..              ||+ .|+++...|.+....+    ...
T Consensus       134 t~~aLE~~lA~leg~e~--ai~~~SG~aAi~~il-~ll~--------------~GD-~VI~~~~~y~~t~~ll~~~l~~~  195 (464)
T PLN02509        134 TRDALESLLAKLDKADR--AFCFTSGMAALSAVT-HLIK--------------NGE-EIVAGDDVYGGSDRLLSQVVPRS  195 (464)
T ss_pred             HHHHHHHHHHHHhCCCE--EEEeCcHHHHHHHHH-HHhC--------------CCC-EEEEcCCchhhHHHHHHHHHHHC
Confidence            34566777888888654  677788887764433 3322              556 7888888988876444    345


Q ss_pred             CCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccc
Q psy12303        189 GLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLL  268 (480)
Q Consensus       189 g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~  268 (480)
                      |+   +++.++..     |+++++++++++      +++|++++++|++|.+.|+++|+++|++||+++++|++|+.+..
T Consensus       196 G~---~v~~vd~~-----d~e~l~~ai~~~------TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~  261 (464)
T PLN02509        196 GV---VVKRVNTT-----NLDEVAAAIGPQ------TKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVL  261 (464)
T ss_pred             Ce---EEEEeCCC-----CHHHHHHhCCcC------CeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcccccc
Confidence            65   66776543     788999888654      89999999999999999999999999999999999999987765


Q ss_pred             ccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC
Q psy12303        269 LSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH  346 (480)
Q Consensus       269 ~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~  346 (480)
                      ..+ ...       ++|++++|++||++++.+  .|++++++.........     +...                .+..
T Consensus       262 ~~p-l~~-------gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~-----~~~~----------------~g~~  312 (464)
T PLN02509        262 SRP-LEL-------GADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYF-----LQNS----------------EGSG  312 (464)
T ss_pred             CCh-hhc-------CCcEEEecCcccccCCCccceeEEEeccHHHHHHHHH-----HHHh----------------cCCC
Confidence            322 223       789999999999998765  67777666543322110     0000                0111


Q ss_pred             CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        347 NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       347 ~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      .....+|+.++.  .+.+..++++..+++.++.+.|++ +|.++-+
T Consensus       313 l~p~~A~l~lr~--L~tL~~R~~r~~~nA~~la~~L~~-~p~V~~V  355 (464)
T PLN02509        313 LAPFDCWLCLRG--IKTMALRIEKQQENARKIAMYLSS-HPRVKKV  355 (464)
T ss_pred             cCHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHhc-CCCccEE
Confidence            345567766655  677888999999999999999999 8988533

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.84  E-value=1.8e-18  Score=170.29  Aligned_cols=214  Identities=13%  Similarity=0.110  Sum_probs=155.8

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH----HHHcCCC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC----AAVCGLG  191 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~----~~~~g~~  191 (480)
                      ++.+.++++.|.+.  .+++++|++|+..++.+...              ||+ .|+++...|......    +...|. 
T Consensus        64 ~Le~~lA~l~g~~~--~v~~~sG~~Ai~~~l~all~--------------pGD-~Vvv~~p~Y~~t~~~~~~~~~~~g~-  125 (405)
T PRK08776         64 LLGEALAELEGGAG--GVITATGMGAINLVLNALLQ--------------PGD-TLVVPHDAYGGSWRLFNALAKKGHF-  125 (405)
T ss_pred             HHHHHHHHHhCCCc--eEEEcCHHHHHHHHHHHHhC--------------CCC-EEEEccCCchHHHHHHHHHHHhcCc-
Confidence            45566888888753  57788889999888877643              556 677777787764332    333344 


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                        +++.++.     .|+++|+++++++      |++|++++++||+|.+.|+++|.++|+++|+++++|++|+.+....+
T Consensus       126 --~v~~v~~-----~d~~~l~~~i~~~------tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~p  192 (405)
T PRK08776        126 --ALITADL-----TDPRSLADALAQS------PKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKP  192 (405)
T ss_pred             --EEEEECC-----CCHHHHHHhcCcC------CeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCCc
Confidence              6666654     3889999888654      89999999999999999999999999999999999999986543221


Q ss_pred             cccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCc
Q psy12303        272 KYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI  349 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~  349 (480)
                       ..+       ++|+++.|++|+++++.+  .|+++++++++.+...... ..                    ++-....
T Consensus       193 -l~~-------gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~-~~--------------------~g~~~s~  243 (405)
T PRK08776        193 -LEF-------GADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWA-NA--------------------LGLTGSP  243 (405)
T ss_pred             -ccc-------cCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHH-Hh--------------------cCCCCCH
Confidence             123       789999999999997754  5777666665544322100 00                    1111345


Q ss_pred             hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        350 FKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       350 l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      +.+|+.++  |.+.++.++++..+++..+.+.|++ +|.+.-+
T Consensus       244 ~~a~l~~~--gl~tl~~r~~~~~~na~~la~~L~~-~p~v~~V  283 (405)
T PRK08776        244 FDAFLTLR--GLRTLDARLRVHQENADAIAALLDG-HAAVNQV  283 (405)
T ss_pred             HHHHHHHh--hhCcHHHHHHHHHHHHHHHHHHHHc-CCCeeEE
Confidence            67776664  4677889999999999999999999 8887543

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.84  E-value=2.6e-19  Score=175.88  Aligned_cols=217  Identities=13%  Similarity=0.113  Sum_probs=160.9

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHH----HHHHcCCC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS----CAAVCGLG  191 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~----~~~~~g~~  191 (480)
                      ++.+.++++.|.+  .+++++||++|+..++.+...              ||+ .|+++...|.+...    .+..+|+ 
T Consensus        69 ~Le~~lA~l~g~~--~~l~~~sgt~Ai~~~l~al~~--------------~GD-~Vl~~~~~y~~~~~~~~~~~~~~Gi-  130 (394)
T PRK07050         69 ALAQRLAEIEGGR--HALLQPSGLAAISLVYFGLVK--------------AGD-DVLIPDNAYGPNRDHGEWLARDFGI-  130 (394)
T ss_pred             HHHHHHHHHhCCC--eEEEeccHHHHHHHHHHHHhC--------------CCC-EEEEecCCcccHHHHHHHHHHhcCe-
Confidence            4455588888875  499999999999999988754              556 78888888887654    4455566 


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                        ++++++..     +.++++++++++      |++|++++++|++|.+.++++|.++|+++|+++++|++|+.+...-+
T Consensus       131 --~v~~vd~~-----~~~~l~~~i~~~------tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~~~  197 (394)
T PRK07050        131 --TVRFYDPL-----IGAGIADLIQPN------TRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKP  197 (394)
T ss_pred             --EEEEECCC-----CHHHHHHhcCCC------CeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccccCH
Confidence              67777643     456788887654      89999999999999999999999999999999999999988765322


Q ss_pred             cccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCc
Q psy12303        272 KYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI  349 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~  349 (480)
                       ...       ++|+++.|++|++++..+  .|+++++++++.+...... .+                    .|-...+
T Consensus       198 -l~~-------GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~-~~--------------------~G~~~~~  248 (394)
T PRK07050        198 -FEH-------GVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLAR-MR--------------------LGIGVSA  248 (394)
T ss_pred             -HHc-------CCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHH-Hh--------------------cCCCCCH
Confidence             233       789999999999986554  5667777766544332110 00                    1111345


Q ss_pred             hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC
Q psy12303        350 FKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP  395 (480)
Q Consensus       350 l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~  395 (480)
                      ...|..++.  .+.+..++++..+++..+.+.|++ +|++..+..|
T Consensus       249 ~~a~l~lr~--l~tl~~Rl~~~~~~a~~la~~L~~-~p~v~~v~~p  291 (394)
T PRK07050        249 DDCSLVLRG--LPSLQVRLAAHDRSALEVAEWLKA-RPEIATVLHP  291 (394)
T ss_pred             HHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHHh-CCCccEEECC
Confidence            566766653  456777889999999999999999 8887755444

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.84  E-value=1.2e-18  Score=170.65  Aligned_cols=221  Identities=15%  Similarity=0.066  Sum_probs=159.5

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA  185 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~  185 (480)
                      ..|...++|+.    +++++|.+.  +++++||+.|+..++.+...              ||+ .|+++...|.+....+
T Consensus        51 ~np~~~~lE~~----lA~l~g~~~--~l~~~sG~~Ai~~~l~~ll~--------------~GD-~Vlv~~~~y~~~~~~~  109 (385)
T PRK08574         51 ENPTLRPLEEA----LAKLEGGVD--ALAFNSGMAAISTLFFSLLK--------------AGD-RVVLPMEAYGTTLRLL  109 (385)
T ss_pred             CCccHHHHHHH----HHHHhCCCc--EEEeCCHHHHHHHHHHHHhC--------------CCC-EEEEcCCCchhHHHHH
Confidence            34555555555    888888754  78889999999998877643              556 7888889999887776


Q ss_pred             HHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHH-HHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccc
Q psy12303        186 AVCGLGTDNCVEVPSDKRGRLIPSELERLVLE-RKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWG  264 (480)
Q Consensus       186 ~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~-~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~  264 (480)
                      +.+.....++..+.      .|++++++++++ +      +++|++++++||+|.+.|+++|.++|+++|+++++|++|+
T Consensus       110 ~~~~~~g~~v~~~~------~d~~~l~~~i~~~~------tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a  177 (385)
T PRK08574        110 KSLEKFGVKVVLAY------PSTEDIIEAIKEGR------TKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFA  177 (385)
T ss_pred             HHhhccCcEEEEEC------CCHHHHHHhcCccC------ceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCC
Confidence            54421111555543      367889888875 3      8899999999999999999999999999999999999998


Q ss_pred             ccccccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcccc
Q psy12303        265 GGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQ  342 (480)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  342 (480)
                      .+....+. ..       ++|+++.|++|++++|..  .|++++++++.......... +                    
T Consensus       178 ~~~~~~~l-~~-------GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~-~--------------------  228 (385)
T PRK08574        178 TPLLYRPL-RH-------GADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRR-R--------------------  228 (385)
T ss_pred             ccccCChh-hh-------CCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHH-h--------------------
Confidence            76542221 23       789999999999997654  35566666655443221100 0                    


Q ss_pred             CCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Q psy12303        343 CGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYL  391 (480)
Q Consensus       343 ~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~  391 (480)
                      .|.......+|..++.  .+.+..++++..+++.++.+.|++ +|.++-
T Consensus       229 ~g~~~~p~~a~l~l~~--l~tL~~R~~~~~~na~~la~~L~~-~p~v~~  274 (385)
T PRK08574        229 LGTIMQPFEAYLVLRG--LKTLEVRFERQCRNAMAIAEFLSE-HPKVAE  274 (385)
T ss_pred             cCCCCCHHHHHHHHcc--cCcHHHHHHHHHHHHHHHHHHHHc-CCCcCE
Confidence            1111234456666554  566788899999999999999999 888753

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.84  E-value=2.3e-18  Score=169.25  Aligned_cols=220  Identities=14%  Similarity=0.108  Sum_probs=159.3

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA  185 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~  185 (480)
                      ..|....+|    +.++++.|.+.  .+++++|++|+..++.+...              ||+ .|+++...|.+....+
T Consensus        62 ~~p~~~~le----~~lA~l~g~~~--~i~~ssG~~Ai~~~l~all~--------------~GD-~Vi~~~~~y~~~~~~~  120 (398)
T PRK08249         62 TNPTVQAFE----EKVRILEGAEA--ATAFSTGMAAISNTLYTFLK--------------PGD-RVVSIKDTYGGTNKIF  120 (398)
T ss_pred             CChHHHHHH----HHHHHHhCCCe--EEEeCChHHHHHHHHHHhcC--------------CCC-EEEEcCCchHHHHHHH
Confidence            344444444    55888889764  68888889999888876643              556 7888888988765433


Q ss_pred             ----HHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeec
Q psy12303        186 ----AVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDA  261 (480)
Q Consensus       186 ----~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~  261 (480)
                          ...|+   ++.+++.     .|+++++++++++      |++|++++++|++|.+.|+++|.++|+++|+++++|+
T Consensus       121 ~~~~~~~Gi---~v~~vd~-----~d~e~l~~~i~~~------tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~  186 (398)
T PRK08249        121 TEFLPRMGV---DVTLCET-----GDHEQIEAEIAKG------CDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDN  186 (398)
T ss_pred             HHHHhhCCe---EEEEcCC-----CCHHHHHHhcCCC------CeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEEC
Confidence                34455   6666553     4899999998764      8999999999999999999999999999999999999


Q ss_pred             cccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcc
Q psy12303        262 AWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKV  340 (480)
Q Consensus       262 a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  340 (480)
                      +|+.+....+ ...       ++|+++.|++|+++++. ..|++++.++++.........  .                 
T Consensus       187 t~a~~~~~~~-l~~-------~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~--~-----------------  239 (398)
T PRK08249        187 TFATPINQNP-LAL-------GADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYRE--I-----------------  239 (398)
T ss_pred             CcCccccCCc-hhh-------CCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHH--h-----------------
Confidence            9986543221 123       78999999999998654 244555566655443321110  0                 


Q ss_pred             ccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        341 IQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       341 ~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                        .+.......+|+.++.  .+.+..++++..+++..+.+.|++ +|.++-+
T Consensus       240 --~g~~~s~~~a~l~l~~--l~tL~~R~~~~~~na~~la~~L~~-~p~v~~V  286 (398)
T PRK08249        240 --NGATMDPMSAYLILRG--MKTLKLRVRQQQESAMALAKYLQT-HPKVEAV  286 (398)
T ss_pred             --cCCCCCHHHHHHHHhC--cchHHHHHHHHHHHHHHHHHHHHc-CCCeeEE
Confidence              1112345566766654  667788889999999999999999 8887644

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.84  E-value=3e-19  Score=176.75  Aligned_cols=235  Identities=14%  Similarity=0.111  Sum_probs=162.4

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH----cCCC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV----CGLG  191 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~----~g~~  191 (480)
                      ++++.++++.|...  .++|+|||+|+..++.+...              +|+ +|+++...|.+....+..    .|+ 
T Consensus        68 ~le~~lA~l~g~~~--av~~sSGt~Al~~al~~ll~--------------~Gd-~Vi~~~~~y~~t~~~~~~~l~~~Gi-  129 (433)
T PRK08134         68 VLEERVAALEGGVG--AIATASGQAALHLAIATLMG--------------AGS-HIVASSALYGGSHNLLHYTLRRFGI-  129 (433)
T ss_pred             HHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHHhC--------------CCC-EEEEeCCccHHHHHHHHHHHhhCCe-
Confidence            34455888899875  79999999999999877632              456 788888888876555433    565 


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                        ++++++.+     |+++++++|+++      |++|++++++|++|.+.|+++|.++|+++|+++++|++++.+....+
T Consensus       130 --~v~~vd~~-----d~~~l~~~i~~~------TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~p  196 (433)
T PRK08134        130 --ETTFVKPG-----DIDGWRAAIRPN------TRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRP  196 (433)
T ss_pred             --EEEEECCC-----CHHHHHHhcCCC------CeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCc
Confidence              78888765     899999999876      89999999999999999999999999999999999999988876443


Q ss_pred             cccCcccCCCCCCccceeCccccCCCccc-ceEEEEeCchhhHh----hhcCCcccccccccccCcccCCC--------C
Q psy12303        272 KYRHPRLTGIERADSVTWNPHKLMGTLLQ-CSTIHFKQDGLLIS----CNQMSAEYLFMQDKLYDVRYDTG--------D  338 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~hK~~~~p~~-~g~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~--------~  338 (480)
                      . .+       ++|+++.|.|||++++.. .|.+++......-.    .....++................        .
T Consensus       197 l-~~-------GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  268 (433)
T PRK08134        197 F-EH-------GADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARRE  268 (433)
T ss_pred             h-hc-------CCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHH
Confidence            3 45       899999999999986542 56665543221100    00000110000000000000000        0


Q ss_pred             ccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        339 KVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       339 ~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      .....+.......+|..++  |.+.+..++++..+++..+.+.|++ +|.+.-+
T Consensus       269 ~~~~~G~~ls~~~A~l~~~--gL~tl~~R~~~~~~nA~~la~~L~~-~p~V~~V  319 (433)
T PRK08134        269 GLRDFGACLSPMNAWQLLQ--GIETLPLRMERHVANTRKVVAFLAS-HPAVARV  319 (433)
T ss_pred             HHHhcCCCCCHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHHHHHh-CCCccEE
Confidence            0011233345666776654  4677899999999999999999999 8887543

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.83  E-value=2.2e-18  Score=169.32  Aligned_cols=217  Identities=13%  Similarity=0.083  Sum_probs=156.3

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH-cCCCCCC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV-CGLGTDN  194 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~-~g~~~~~  194 (480)
                      ++++.++++.|.+.  .+.+++|++|+..++.+..+              ||+ .|+++...|.+....+.. +..-..+
T Consensus        65 ~Le~~lA~~~g~~~--~i~~~sG~~Ai~~~l~all~--------------~Gd-~Vl~~~~~y~~t~~~~~~~~~~~gi~  127 (388)
T PRK07811         65 ALEEQLAALEGGAY--GRAFSSGMAATDCLLRAVLR--------------PGD-HIVIPNDAYGGTFRLIDKVFTRWGVE  127 (388)
T ss_pred             HHHHHHHHHhCCCc--eEEeCCHHHHHHHHHHHHhC--------------CCC-EEEEcCCCchHHHHHHHHhCcCCCeE
Confidence            34455888888875  56667889999999987754              556 788888888865554433 2211115


Q ss_pred             eEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccccccc
Q psy12303        195 CVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYR  274 (480)
Q Consensus       195 v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~  274 (480)
                      +..++.     .|+++|+++++++      +++|++++++|++|.+.|+++|.++|+++|+++++|++|+.+....+ ..
T Consensus       128 ~~~~d~-----~d~e~l~~~i~~~------tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p-~~  195 (388)
T PRK07811        128 YTPVDL-----SDLDAVRAAITPR------TKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQP-LA  195 (388)
T ss_pred             EEEeCC-----CCHHHHHHhcCcC------CeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCc-hh
Confidence            556554     3899999998765      89999999999999999999999999999999999999987654322 12


Q ss_pred             CcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHH
Q psy12303        275 HPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL  352 (480)
Q Consensus       275 ~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~  352 (480)
                      .       ++|+++.|++|++++|.+  .|+++++++.+........ .+                    .+.......+
T Consensus       196 ~-------gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~-~~--------------------~g~~~s~~~a  247 (388)
T PRK07811        196 L-------GADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQ-NG--------------------AGAVPGPFDA  247 (388)
T ss_pred             h-------CCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHH-Hh--------------------cCCCCCHHHH
Confidence            3       789999999999997654  5777777665443321100 00                    0111234456


Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        353 WLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       353 ~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      |..++.  .+.+..++++..+++..+.+.|++ +|+++-+
T Consensus       248 ~l~~~~--L~tl~~R~~~~~~na~~la~~L~~-~p~v~~V  284 (388)
T PRK07811        248 YLTLRG--LKTLAVRMDRHSENAEAVAEFLAG-HPEVSTV  284 (388)
T ss_pred             HHHHhc--cCcHHHHHHHHHHHHHHHHHHHHh-CCCeeEE
Confidence            666554  455778888999999999999999 8988644

>PRK05839 hypothetical protein; Provisional

Probab=99.83  E-value=6.8e-18  Score=165.97  Aligned_cols=312  Identities=11%  Similarity=-0.025  Sum_probs=192.0

Q ss_pred             hHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhC--CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCcc
Q psy12303         88 MAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIG--WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAI  165 (480)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~  165 (480)
                      .+.+.+...... ...|....+..++.+.+++++++..|  .+++++++|+|+++++..++.+....            .
T Consensus        41 ~~~~a~~~~~~~-~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~~------------~  107 (374)
T PRK05839         41 FIQDALKNNAHL-LNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFD------------K  107 (374)
T ss_pred             HHHHHHHHHhhc-cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhcC------------C
Confidence            334554443322 23454444556888888999999888  46789999999999888777665420            0


Q ss_pred             CCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCC--CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC-
Q psy12303        166 KGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKR--GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP-  242 (480)
Q Consensus       166 ~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~--~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~-  242 (480)
                      +|+ .|+++.++++.+...+...|+   +++.+|.+++  +.+|+++.  .+ +      .+++|++++++||||.+.+ 
T Consensus       108 ~gd-~vlv~~P~y~~~~~~~~~~g~---~v~~v~~~~~~~~~~d~~~~--~~-~------~~k~v~i~nP~NPTG~~~s~  174 (374)
T PRK05839        108 QNP-TIAYPNPFYQIYEGAAIASRA---KVLLMPLTKENDFTPSLNEK--EL-Q------EVDLVILNSPNNPTGRTLSL  174 (374)
T ss_pred             CCC-EEEECCCCchhhHHHHHhcCC---EEEEeecccccCCcCCcchh--hh-c------cccEEEEeCCCCCcCcccCH
Confidence            334 889999999999999999998   8899998753  45554433  22 1      2789999999999999966 


Q ss_pred             --hHHHHHHHHHcCcEEEeeccccccccccccccCcccC-----CCC--CCccceeCccccC-CCcccceEEEEeCchhh
Q psy12303        243 --IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLT-----GIE--RADSVTWNPHKLM-GTLLQCSTIHFKQDGLL  312 (480)
Q Consensus       243 --l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-----~~~--~~D~~~~s~hK~~-~~p~~~g~~~~~~~~~~  312 (480)
                        +++|.++|+++|+++++|++|+......+. .. ...     +..  .--+++.|++|.+ ..+..+|+++. ++...
T Consensus       175 ~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~-~s-~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~-~~~~~  251 (374)
T PRK05839        175 EELIEWVKLALKHDFILINDECYSEIYENTPP-PS-LLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAG-DASIL  251 (374)
T ss_pred             HHHHHHHHHHHHcCCEEEeccchhhcccCCCC-CC-HhhhhcccCccccCcEEEEeccccccCCccceeEEEec-CHHHH
Confidence              677788899999999999999875321111 00 111     000  1125667999975 45578999886 44444


Q ss_pred             HhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Q psy12303        313 ISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYL  391 (480)
Q Consensus       313 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~  391 (480)
                      ....... .+...                 +   ...+...++...+ ..+.+++..++..+..+.+.+.|..     . 
T Consensus       252 ~~~~~~~-~~~~~-----------------~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----~-  304 (374)
T PRK05839        252 KKYKAYR-TYLGC-----------------A---SPLPLQKAAAVAWLDDEHAEFFRNIYAKNLKLAREILGI-----T-  304 (374)
T ss_pred             HHHHHHH-hhcCC-----------------C---CChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhcCC-----C-
Confidence            4332111 11000                 0   1111111121111 2344555566666666666554422     2 


Q ss_pred             ecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeCC----cccEEEEecccCCCCHHHH
Q psy12303        392 ILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLND----LPNFFRNIISSAAVTEGDI  466 (480)
Q Consensus       392 ~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~~----~~~~~R~~~~~~~~t~~di  466 (480)
                        .|..+.++|.-.+.                 ..++..++.+ .|+.+. ++...+    ..+++|+++.   .+++++
T Consensus       305 --~p~gg~fi~~~~~~-----------------~~~~~~~l~~~~gi~v~-pg~~f~~~~~~~~~iRis~~---~~~~~~  361 (374)
T PRK05839        305 --IPPATFYVWLPVDN-----------------DEEFTKKLYQNEGIKVL-PGSFLGRNGIGKGYVRIALV---YDTPKL  361 (374)
T ss_pred             --CCCeeEEEEEeCCC-----------------hHHHHHHHHHHCCEEEe-CchhhCCCCCCCCeEEEEec---CCHHHH
Confidence              46666665532221                 1245566654 775444 332222    1479999953   369999


Q ss_pred             HHHHHHHHHhhc
Q psy12303        467 DFLLTEMDRLGH  478 (480)
Q Consensus       467 ~~~~~~l~~~~~  478 (480)
                      ...+++|.++++
T Consensus       362 ~~~l~~l~~~l~  373 (374)
T PRK05839        362 EKALEIIKTYLE  373 (374)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998765

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.83  E-value=2.2e-18  Score=169.10  Aligned_cols=215  Identities=15%  Similarity=0.186  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH----HHHHHcCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR----SCAAVCGL  190 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~----~~~~~~g~  190 (480)
                      .++.+.+++++|.+.  +++++||++|+..++.+...              ||+ .|+++...|.+..    ..+...|+
T Consensus        57 ~~le~~la~l~g~~~--~~~~~sG~~Ai~~al~al~~--------------~Gd-~Vl~~~~~~~~t~~~~~~~~~~~g~  119 (380)
T TIGR01325        57 AAFEERIAALEGAER--AVATATGMSAIQAALMTLLQ--------------AGD-HVVASRSLFGSTVGFISEILPRFGI  119 (380)
T ss_pred             HHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHHhC--------------CCC-EEEEecCCcchHHHHHHHHHHHhCC
Confidence            345566888999854  78999999999999877653              456 6777777776533    34455666


Q ss_pred             CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccc
Q psy12303        191 GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLS  270 (480)
Q Consensus       191 ~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~  270 (480)
                         ++..++.+     |+++++++++++      +++|++++++|++|.+.|+++|.++|+++|+++++|++|+.+....
T Consensus       120 ---~v~~v~~~-----d~~~l~~~i~~~------tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~  185 (380)
T TIGR01325       120 ---EVSFVDPT-----DLNAWEAAVKPN------TKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQ  185 (380)
T ss_pred             ---EEEEECCC-----CHHHHHHhcCCC------ceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCC
Confidence               77788765     788998888654      8999999999999999999999999999999999999998654322


Q ss_pred             ccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCc
Q psy12303        271 KKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI  349 (480)
Q Consensus       271 ~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~  349 (480)
                      + ...       ++|+++.|++|+++++. ..|++++.+++..+....    +...                 .+.....
T Consensus       186 p-l~~-------g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~----~~~~-----------------~g~~~~p  236 (380)
T TIGR01325       186 P-LKL-------GADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAV----YLRH-----------------TGPAMSP  236 (380)
T ss_pred             c-hhh-------CCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHH----HHHh-----------------hCCCCCH
Confidence            2 233       78999999999999763 344444455544433221    1100                 1111234


Q ss_pred             hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        350 FKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       350 l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      ..+|..++  +.+.+..++++..+++..+.+.|++ +|+++-+
T Consensus       237 ~~a~~~l~--~l~tl~~r~~~~~~~a~~la~~L~~-~p~v~~V  276 (380)
T TIGR01325       237 FNAWVLLK--GLETLSLRMQKQFDSALAIAEWLQA-QPQVQAV  276 (380)
T ss_pred             HHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHc-CCCccEE
Confidence            45566554  4667778889999999999999999 8887643

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.83  E-value=2e-18  Score=167.65  Aligned_cols=219  Identities=14%  Similarity=0.136  Sum_probs=165.8

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA  185 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~  185 (480)
                      ..|....+|+.    ++++-|...  ++++++|+.|+..++.+...              ||+ .|+++...|..+...+
T Consensus        60 ~nPt~~~le~~----la~LEg~~~--a~~~~SGmaAi~~~~~~ll~--------------~GD-~Vv~~~~~Yg~t~~l~  118 (395)
T PRK08114         60 GTLTHFSLQEA----MCELEGGAG--CALYPCGAAAVANAILAFVE--------------QGD-HVLMTGTAYEPTQDFC  118 (395)
T ss_pred             CChhHHHHHHH----HHHHhCCCe--EEEEhHHHHHHHHHHHHHcC--------------CCC-EEEEeCCCcHHHHHHH
Confidence            45776677766    777767653  88888999999998877643              556 7778777887777665


Q ss_pred             ----HHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcC--cEEEe
Q psy12303        186 ----AVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYN--MWLHV  259 (480)
Q Consensus       186 ----~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~--~~l~v  259 (480)
                          ...|+   ++.+++..     |.++++++++++      |++|++++++|++|.+.||++|+++|+++|  ++++|
T Consensus       119 ~~~l~~~Gi---~v~~vd~~-----d~~~l~~~l~~~------TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvV  184 (395)
T PRK08114        119 SKILSKLGV---TTTWFDPL-----IGADIAKLIQPN------TKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMI  184 (395)
T ss_pred             HHHHHhcCc---EEEEECCC-----CHHHHHHhcCCC------ceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEE
Confidence                33455   77777643     788999999765      899999999999999999999999999985  99999


Q ss_pred             eccccccccccccccCcccCCCCCCccceeCccccCCCcc--cceEEEEeCchhhHhhhcCCcccccccccccCcccCCC
Q psy12303        260 DAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL--QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       260 D~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~--~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  337 (480)
                      |++++.+.. .+..++       ++|+++.|.|||++++.  ..|+++ .+++........  .+.              
T Consensus       185 DnT~a~p~~-~~pl~~-------GaDivv~S~tKyl~Ghsdv~~G~v~-~~~~~~~~l~~~--~~~--------------  239 (395)
T PRK08114        185 DNTWAAGVL-FKALDF-------GIDISIQAGTKYLVGHSDAMIGTAV-ANARCWEQLREN--SYL--------------  239 (395)
T ss_pred             ECCCccccc-cCHHHc-------CCcEEEEcCcccccCCCcceeEEEE-cCHHHHHHHHHH--HHh--------------
Confidence            999999866 666667       99999999999999884  566555 444332221100  000              


Q ss_pred             CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        338 DKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       338 ~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                           .|....+..+|+.++.  .+.+.-+++++.+++..+.+.|++ +|.++-+
T Consensus       240 -----~G~~~~p~~a~l~~rg--l~TL~lR~~~~~~na~~va~~L~~-hp~V~~V  286 (395)
T PRK08114        240 -----MGQMVDADTAYMTSRG--LRTLGVRLRQHEESSLKVAEWLAE-HPEVARV  286 (395)
T ss_pred             -----ccCCCCHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHHc-CCCEeEE
Confidence                 1222456678876654  667888899999999999999999 8887643

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.83  E-value=3.5e-18  Score=166.65  Aligned_cols=218  Identities=15%  Similarity=0.155  Sum_probs=157.8

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA  185 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~  185 (480)
                      ..|....+|++    ++++.|.+  .+++++||++|+..++.+...              ||+ .|++++..|......+
T Consensus        48 gnPt~~~lE~~----lA~l~g~~--~~~~~~sG~~Ai~~al~all~--------------~GD-~Vl~~~~~y~~t~~~~  106 (377)
T TIGR01324        48 GTLTHFALQDA----MCELEGGA--GCYLYPSGLAAVTNSILAFVK--------------AGD-HVLMVDSAYEPTRYFC  106 (377)
T ss_pred             CCccHHHHHHH----HHHHhCCC--cEEEECcHHHHHHHHHHHhcC--------------CCC-EEEEcCCCcHHHHHHH
Confidence            34655666665    77888875  489999999999999887743              556 6777777776655433


Q ss_pred             ----HHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeec
Q psy12303        186 ----AVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDA  261 (480)
Q Consensus       186 ----~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~  261 (480)
                          ...|+   ++..++.+     +.++++++++++      +++|++++++|++|.+.|+++|+++|+++|+++++|+
T Consensus       107 ~~~~~~~gi---~v~~~d~~-----~~e~l~~~i~~~------tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~  172 (377)
T TIGR01324       107 DIVLKRMGV---DITYYDPL-----IGEDIATLIQPN------TKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDN  172 (377)
T ss_pred             HHHHHhcCc---EEEEECCC-----CHHHHHHhcCCC------ceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEEC
Confidence                33455   56665432     237788887665      8999999999999999999999999999999999999


Q ss_pred             cccccccccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCc
Q psy12303        262 AWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDK  339 (480)
Q Consensus       262 a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  339 (480)
                      +|+.+...- ...+       ++|+++.|.+||++++.+  .|+++ .+++.+.....  ..+.                
T Consensus       173 t~a~g~~~~-pl~~-------gaDivv~S~tK~l~G~~d~~gG~v~-~~~~~~~~l~~--~~~~----------------  225 (377)
T TIGR01324       173 TWAAGLLFK-PLEH-------GVDISIQAGTKYLVGHSDIMIGTVV-ANARTWDQLRE--HSYL----------------  225 (377)
T ss_pred             CCccccccC-cccc-------CceEEEecCceeccCCCCceEEEEE-eCHHHHHHHHH--HHHH----------------
Confidence            999886633 2344       899999999999998754  45555 44444332221  0111                


Q ss_pred             cccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Q psy12303        340 VIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYL  391 (480)
Q Consensus       340 ~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~  391 (480)
                         .|....+..+|..++.  .+.+..+++++.+++..+.+.|++ .|.++-
T Consensus       226 ---~G~~l~p~~a~~~~rg--l~tl~~R~~~~~~~a~~la~~L~~-~p~v~~  271 (377)
T TIGR01324       226 ---MGQMVDADDAYTTLRG--LRTLGVRLKQHQESSLAIAKWLSE-QPEVAR  271 (377)
T ss_pred             ---hCCCCCHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHh-CCCcCE
Confidence               1222345567776664  567778899999999999999999 787743

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.83  E-value=2.8e-18  Score=167.97  Aligned_cols=217  Identities=12%  Similarity=0.086  Sum_probs=159.2

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH-cCCCCCC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV-CGLGTDN  194 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~-~g~~~~~  194 (480)
                      ++.+.++++.|.+  ++++++||++|+..++.+...              ||+ .|+++...|.+....+.. .+.+..+
T Consensus        55 ~le~~lA~l~g~~--~v~~~~gg~~Ai~~~l~all~--------------~GD-~Vl~~~p~y~~~~~~~~~~~~~~~~~  117 (382)
T TIGR02080        55 LLQQALAELEGGA--GAVVTNTGMSAIHLVTTALLG--------------PDD-LLVAPHDCYGGTYRLLNALAKKGCFR  117 (382)
T ss_pred             HHHHHHHHHhCCC--cEEEEcCHHHHHHHHHHHHcC--------------CCC-EEEEcCCCcHHHHHHHHHHHhhcCeE
Confidence            3455688888853  599999999999988887743              556 788888888865554433 3332225


Q ss_pred             eEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccccccc
Q psy12303        195 CVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYR  274 (480)
Q Consensus       195 v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~  274 (480)
                      +..++.     .|+++++++++++      |++|++++++||+|.+.|+++|.++|+++|+++++|++|+.+....+ ..
T Consensus       118 v~~~d~-----~d~~~l~~ai~~~------tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~p-l~  185 (382)
T TIGR02080       118 VLFVDQ-----GDEQALRAALAQK------PKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNP-LA  185 (382)
T ss_pred             EEEECC-----CCHHHHHHhcCcC------ceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCc-hh
Confidence            555432     3889999988765      89999999999999999999999999999999999999987643322 12


Q ss_pred             CcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHH
Q psy12303        275 HPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL  352 (480)
Q Consensus       275 ~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~  352 (480)
                      .       ++|+++.|++|+++++.+  .|+++++++...+...... .+                    .|.....+.+
T Consensus       186 ~-------gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~-~~--------------------~g~~~sp~~a  237 (382)
T TIGR02080       186 L-------GADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWA-NN--------------------LGVTGGAFDS  237 (382)
T ss_pred             h-------CCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHH-Hc--------------------cCCCCCHHHH
Confidence            3       689999999999987655  6776666665544322110 11                    1112456677


Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        353 WLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       353 ~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      |+.++.  .+.+..+++++.+++..+.+.|++ +|.++-+
T Consensus       238 ~l~lr~--l~tl~~R~~~~~~na~~~a~~L~~-~p~v~~V  274 (382)
T TIGR02080       238 YLTLRG--LRTLVARMRLQQRNAQAIVEYLQT-QPLVKKI  274 (382)
T ss_pred             HHHHcc--cchHHHHHHHHHHHHHHHHHHHHh-CCCeeEE
Confidence            777654  667888899999999999999999 8888644

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.83  E-value=2.3e-18  Score=169.12  Aligned_cols=307  Identities=15%  Similarity=0.101  Sum_probs=191.7

Q ss_pred             HHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCC
Q psy12303        113 METVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGT  192 (480)
Q Consensus       113 ~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~  192 (480)
                      ..+++.+++++++|.+  .+++++|||.|+..++.++.-             .||+ .|+++..+|+++..++...|+  
T Consensus        32 ~~~~~e~~la~~~g~~--~~v~~~sgt~al~~~l~~~~~-------------~~Gd-~Viv~~~t~~~~~~~~~~~G~--   93 (375)
T PRK11706         32 FTRRCQQWLEQRFGSA--KVLLTPSCTAALEMAALLLDI-------------QPGD-EVIMPSYTFVSTANAFVLRGA--   93 (375)
T ss_pred             HHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHhCC-------------CCCC-EEEECCCCcHHHHHHHHHcCC--
Confidence            3455667788888886  499999999998887765421             1556 899999999999999999998  


Q ss_pred             CCeEEeeCCCC-CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        193 DNCVEVPSDKR-GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       193 ~~v~~v~~~~~-~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                       +++.++++++ +.+|++++++++++.      +++|++++   ++|...++++|.++|+++|+++++|+||+.+.....
T Consensus        94 -~~v~~d~d~~~~~~d~~~le~~i~~~------tk~i~~~~---~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~  163 (375)
T PRK11706         94 -KIVFVDIRPDTMNIDETLIEAAITPK------TRAIVPVH---YAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKG  163 (375)
T ss_pred             -EEEEEecCCCcCCcCHHHHHHhcCCC------CeEEEEeC---CCCCccCHHHHHHHHHHcCCEEEEECccccccccCC
Confidence             8889998875 589999999998764      78888764   589999999999999999999999999998763221


Q ss_pred             cccCcccCCCCCCccceeCcc--ccCCCcccceEEEEeCchhhHhhhcCC-----cccccccccccCcccCCCCccccCC
Q psy12303        272 KYRHPRLTGIERADSVTWNPH--KLMGTLLQCSTIHFKQDGLLISCNQMS-----AEYLFMQDKLYDVRYDTGDKVIQCG  344 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~h--K~~~~p~~~g~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~  344 (480)
                      .    .. |. ..|.-++|+|  |.+..+ ..|+++++++++...+....     ........   ...+...  .+..+
T Consensus       164 ~----~~-g~-~~~~~~~Sf~~~K~l~~g-~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~--~~g~~  231 (375)
T PRK11706        164 R----AL-GT-IGHIGCFSFHETKNYTAG-EGGALLINDPALIERAEIIREKGTNRSQFFRGQ---VDKYTWV--DIGSS  231 (375)
T ss_pred             e----ee-ec-CcCEEEEeCCCCcccccc-CCeEEEECCHHHHHHHHHHHHcCCCcchhhccC---CCcceee--ecccc
Confidence            1    11 11 3466667777  998753 34556666665544322111     00000000   0000000  01111


Q ss_pred             CCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC--C-eEEecCCce---eEEEEE-eecCccCCCchhhH
Q psy12303        345 RHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD--K-FYLILEPEM---VNVSFW-YLPTRVRNMPHEKR  417 (480)
Q Consensus       345 r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~--g-~~~~~~~~~---~~v~f~-~~~~~~~~~~~~~~  417 (480)
                      .+...+.+...+..  .+.+++..++.+++++++.+.|.. ++  + +.+...+..   +...+. ..+..   .+    
T Consensus       232 ~~~~~~~aa~~~~q--l~~l~~~~~~R~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----  301 (375)
T PRK11706        232 YLPSELQAAYLWAQ--LEAADRINQRRLALWQRYYDALAP-LAEAGRIELPSIPDDCKHNAHMFYIKLRDL---ED----  301 (375)
T ss_pred             cCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcC-CCcCCeeecCCCCCCCceeeEEEEEEECCc---CC----
Confidence            11222333222333  456788888999999999999988 66  2 443211211   111111 11111   00    


Q ss_pred             HHHhhhhhHHHHHHHHhcccEEEe-eee---------e---CC--------cccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        418 LNILGEITPILKGRMMQAGTMMVG-YQP---------L---ND--------LPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       418 ~~~l~~~~~~i~~~l~~~g~~~~~-~~~---------~---~~--------~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                             ..++.+.|.++|+.... +.+         .   .+        ....+-+. +++..+++|++++++.|+++
T Consensus       302 -------r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP-~~~~l~~~~~~~i~~~i~~~  373 (375)
T PRK11706        302 -------RSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLP-LFYNLTDVEQRTVIDTILEF  373 (375)
T ss_pred             -------HHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEecc-CCCCCCHHHHHHHHHHHHHH
Confidence                   23566777777754210 000         0   00        02346666 78889999999999999986


Q ss_pred             h
Q psy12303        477 G  477 (480)
Q Consensus       477 ~  477 (480)
                      .
T Consensus       374 ~  374 (375)
T PRK11706        374 F  374 (375)
T ss_pred             h
Confidence            4

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.83  E-value=6.8e-18  Score=167.03  Aligned_cols=302  Identities=12%  Similarity=0.069  Sum_probs=189.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC-ceEEEecCCCchhHHHHHHHcCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG-QLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g-~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      ....++.+.++++++.+  .+.|+++||+||..|++++|....    .++.   +| +..|......|.+...+....+.
T Consensus        77 ~~~~~la~~L~~~~~~~--~~~f~~SGseA~e~Alk~ar~~~~----~~~~---~~r~~ii~~~~~yHG~~~~~~~~~~~  147 (397)
T TIGR03246        77 EPVLRLAKKLVDATFAD--KVFFCNSGAEANEAALKLARRYAL----DKHG---ADKSEIVAFKNSFHGRTLFTVSVGGQ  147 (397)
T ss_pred             HHHHHHHHHHHhhCCCC--EEEEeCCcHHHHHHHHHHHHHHHH----hcCC---CCCCEEEEECCCcCCccHHHHHhcCC
Confidence            34456677788887653  699999999999999999986411    1110   12 32566666778887766665442


Q ss_pred             C---------CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc----ChHHHHHHHHHcCcEE
Q psy12303        191 G---------TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD----PIEEIADICQKYNMWL  257 (480)
Q Consensus       191 ~---------~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~----~l~~I~~i~~~~~~~l  257 (480)
                      .         ...+..+|.+     |++++++++++.      +++|+++..+++.|.+.    .+++|.++|++||+++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~------~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~ll  216 (397)
T TIGR03246       148 PKYSQGFAPLPGGIKHAPYN-----DLAAAKALISDK------TCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALL  216 (397)
T ss_pred             cccccCCCCCCCceEEeCCC-----CHHHHHHHhccC------eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence            1         1133445544     889999988643      88999998887778653    3999999999999999


Q ss_pred             EeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCC
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  337 (480)
                      ++|++|.+.......+.. ...++ .+|+++  +.|.++++++.|+++.++ ++.+.....     .+.          .
T Consensus       217 I~DEv~tG~Gr~G~~~a~-~~~gv-~pDi~t--~~K~lggG~pigav~~~~-~i~~~~~~~-----~~~----------~  276 (397)
T TIGR03246       217 IFDEVQTGVGRTGELYAY-MHYGV-TPDILT--SAKALGGGFPIGAMLTTT-EIAAHLKVG-----THG----------T  276 (397)
T ss_pred             EEechhhcCCccccchhh-hhcCC-CCCEEE--eehhhhCCcceeEEEEcH-HHHHhccCC-----CcC----------C
Confidence            999999766443322222 23345 578876  579997778889988754 333322110     000          0


Q ss_pred             CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEec--CCceeEEEEEeecCccCCCch
Q psy12303        338 DKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD-KFYLIL--EPEMVNVSFWYLPTRVRNMPH  414 (480)
Q Consensus       338 ~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~-g~~~~~--~~~~~~v~f~~~~~~~~~~~~  414 (480)
                        ++ ++.+....++.+++..+.   -.++.++..++.++|.+.|++ +. .+.++.  .....++.+.+.+..      
T Consensus       277 --t~-~~~p~~~aaa~a~l~~~~---~~~l~~~~~~~~~~l~~~L~~-l~~~~~~~~~vrg~G~~~~i~~~~~~------  343 (397)
T TIGR03246       277 --TY-GGNPLACAVAGKVLDLVN---TPELLAGVKQRHDLFVDGLEK-INARYNVFSEIRGKGLLIGAVLTEAY------  343 (397)
T ss_pred             --CC-CCCHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHHH-HHhcCCCeEeeecCceEEEEEEcCch------
Confidence              00 111122333344444432   245678888888999888877 42 111221  122233333222110      


Q ss_pred             hhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        415 EKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       415 ~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                             ......+.+.|.++|.++...    + .+++|++ ++..+|++||++++++|++.+++
T Consensus       344 -------~~~~~~~~~~l~~~Gv~~~~~----g-~~~lR~~-p~~~~t~~~i~~~~~~l~~~l~~  395 (397)
T TIGR03246       344 -------QGKAKQFVNAAAEEGVIALIA----G-PNVVRFA-PSLVISDDDIDEGLARFERAIEQ  395 (397)
T ss_pred             -------hhHHHHHHHHHHHCCeEEeec----C-CCEEEEe-CCCCCCHHHHHHHHHHHHHHHHH
Confidence                   011346778888999665432    3 4689998 88999999999999999987754

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.83  E-value=3e-18  Score=171.38  Aligned_cols=364  Identities=12%  Similarity=0.050  Sum_probs=205.0

Q ss_pred             hHHhHHHHHHHHcCcCCcchh-cChhhHHHHHHHHHHHHHHhCC---CCC--CeEECCChhHHHHHHHHHHHHhcCchhH
Q psy12303         85 VVSMAGEWLIATANTNMFTYE-IAPVFILMETVVLEKMRQIIGW---QGG--DSILAPGGSISNLYAFLAARHKMFPTYK  158 (480)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~e~~~~~~la~~~g~---~~~--~~~~t~ggt~a~~~al~~~~~~~~~~~~  158 (480)
                      ++..+.++..+..+.   .|. ........+..+.+++.+.++.   +++  ++++|+|+++|+..++.++....+    
T Consensus       108 ~~~~~~~~~~~~~~~---~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~l----  180 (521)
T TIGR03801       108 PDAFLYEMCDGIIGD---NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANEL----  180 (521)
T ss_pred             CCHHHHHHHHHhhcC---CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhc----
Confidence            344555555554432   353 3333445555555777776542   333  799999999999998876432110    


Q ss_pred             hcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--C-----CCCCHHHHHHHHHHHHHCCCccEEEEec
Q psy12303        159 EKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--R-----GRLIPSELERLVLERKAKGDIPFFVNCT  231 (480)
Q Consensus       159 ~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~-----~~~d~~~L~~~i~~~~~~~~~~~~v~~~  231 (480)
                           ..||+ .|++..+.++.+...+...|.+. +++.++.++  +     +.+|.++|++++++.      +++|+++
T Consensus       181 -----l~pGD-~Vlv~~P~y~~y~~~~~l~~~g~-~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~------~kai~l~  247 (521)
T TIGR03801       181 -----LKKGD-KIALMTPIFTPYLEIPELPRYDF-EVVRIKADEMTEDGTHTWQYPDKELEKLRDPS------IKALFVV  247 (521)
T ss_pred             -----CCCCC-EEEEeCCCcHHHHHHHHHhcCCc-EEEEeecccccccccccCCCCHHHHHHhcCCC------CcEEEEe
Confidence                 01666 88889999999999888886544 667777653  2     789999999877654      8999999


Q ss_pred             cCCCccccccC---hHHHHHHHHHc--CcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCC-cccceEEE
Q psy12303        232 SGTTVLGAFDP---IEEIADICQKY--NMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGT-LLQCSTIH  305 (480)
Q Consensus       232 ~~~~~~G~~~~---l~~I~~i~~~~--~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~  305 (480)
                      +|+||||.+.+   +++|+++|++|  ++++++|++|+.+..   .+.. .......--+++.|++|.++. +..+|+++
T Consensus       248 nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~s-l~~~~~~~vI~v~SfSK~fg~~G~RlG~i~  323 (521)
T TIGR03801       248 NPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD---DFRS-LFAELPYNTIGVYSFSKYFGATGWRLGTIA  323 (521)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc---cccc-hhhhCCCCEEEEEcchhhccCchhhhhhhh
Confidence            99999999977   78888889987  899999999987542   1111 111111223567799999864 47899998


Q ss_pred             EeCchhhHhhhc-----------CCccccccccccc-------CcccCCCC-ccccCCCCCCc-hHHHHHHHHh--cHHH
Q psy12303        306 FKQDGLLISCNQ-----------MSAEYLFMQDKLY-------DVRYDTGD-KVIQCGRHNDI-FKLWLQWRAK--GDEG  363 (480)
Q Consensus       306 ~~~~~~~~~~~~-----------~~~~~l~~~~~~~-------~~~~~~~~-~~~~~~r~~~~-l~~~~~l~~~--g~~~  363 (480)
                      ..+.........           ..-..+......-       ........ .+...+..... .++.+....+  +...
T Consensus       324 ~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~~~~y  403 (521)
T TIGR03801       324 LHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDKENAY  403 (521)
T ss_pred             cCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccchhH
Confidence            765422111100           0000000000000       00000000 00000111110 1111111122  3445


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeEE-ecCCceeEEEEEeecCccCCCchhhHHHHhhh--hhHHHHHHHHhcccEEE
Q psy12303        364 FEKQIDRLMELAEYMVKKIKSMPDKFYL-ILEPEMVNVSFWYLPTRVRNMPHEKRLNILGE--ITPILKGRMMQAGTMMV  440 (480)
Q Consensus       364 ~~~~~~~~~~l~~~l~~~l~~~~~g~~~-~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~--~~~~i~~~l~~~g~~~~  440 (480)
                      .+++.+..++..+.+.+.|     |+.+ ..+|..+.++|.-.+.-.......++...+..  -..++..+|.++..+++
T Consensus       404 ~~~~~~~~~~R~~~l~~~L-----g~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV~v  478 (521)
T TIGR03801       404 KAETKDICRRREKLLFRGL-----GLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGIVL  478 (521)
T ss_pred             HHHHHHHHHHHHHHHHHhc-----CCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCEEE
Confidence            5666666666766666666     3322 13567777776544321000000011111110  12456667766544544


Q ss_pred             eeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        441 GYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       441 ~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .++...+ ..+++|+|+.+  .+++++.+..++|++++++
T Consensus       479 ~PG~~Fg~~~~~vRisla~--l~~~~~~~~~~rl~~~~~~  516 (521)
T TIGR03801       479 LPGGGFGGPEWSVRVSLAN--LNEYDYAEIGRAIRKILDE  516 (521)
T ss_pred             eCchhcCCCCCeEEEEecC--CCHHHHHHHHHHHHHHHHH
Confidence            4443333 24689999543  5789999999999987754

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.83  E-value=3e-18  Score=169.75  Aligned_cols=240  Identities=17%  Similarity=0.164  Sum_probs=163.7

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH---
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR---  182 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~---  182 (480)
                      ..|....+|+    .++++.|.+  ..++++||+.|+..++.....              ||+ .|+++...|....   
T Consensus        62 ~~p~~~~Le~----~lA~leg~~--~al~~~sG~~Ai~~al~~ll~--------------~GD-~Vlv~~~~y~~t~~~~  120 (431)
T PRK08248         62 MNPTTDVFEK----RIAALEGGI--GALAVSSGQAAITYSILNIAS--------------AGD-EIVSSSSLYGGTYNLF  120 (431)
T ss_pred             CCchHHHHHH----HHHHHhCCC--cEEEECCHHHHHHHHHHHHhC--------------CCC-EEEEccCchhhHHHHH
Confidence            3455455554    488888875  489999999999999877643              556 7878887776533   


Q ss_pred             -HHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeec
Q psy12303        183 -SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDA  261 (480)
Q Consensus       183 -~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~  261 (480)
                       ..+...|+   ++++++.+     |+++++++++++      +++|++++++||+|.+.|+++|.++|+++|+++++|+
T Consensus       121 ~~~~~~~Gv---~v~~vd~~-----d~e~l~~ai~~~------tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~  186 (431)
T PRK08248        121 AHTLPKLGI---TVKFVDPS-----DPENFEAAITDK------TKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDN  186 (431)
T ss_pred             HHHHHhCCE---EEEEECCC-----CHHHHHHhcCCC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeC
Confidence             33455666   77888763     899999988764      8899999999999999999999999999999999999


Q ss_pred             cccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCcccccccccccCcc--cC---
Q psy12303        262 AWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVR--YD---  335 (480)
Q Consensus       262 a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~---  335 (480)
                      +++.+....+ ..+       ++|+++.|+||++++|. .+|++++.......... ....++...+..+...  ++   
T Consensus       187 t~a~~~~~~p-l~~-------gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  257 (431)
T PRK08248        187 TFASPYLLRP-IEH-------GADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGS-GKFPGLTEPDPSYHGLVYTDAVG  257 (431)
T ss_pred             CCCccccCCh-hHc-------CCCEEEEcCccccCCCCCceEEEEEeCCccccccc-cccccccCCccccccchhhhhhc
Confidence            9986543333 244       89999999999999874 36777765432110000 0000010000000000  00   


Q ss_pred             --------CCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        336 --------TGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       336 --------~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                              ...+....|.......+|+.++  |.+.+..+++++.+++..+.+.|++ +|+++-+
T Consensus       258 ~~~~~~~~~~~~~~~~G~~l~p~~a~l~~r--gl~tl~~R~~~~~~nA~~la~~L~~-~p~v~~V  319 (431)
T PRK08248        258 EAAYITKARVQLLRDLGAALSPFNSFLLLQ--GLETLHLRMERHSENALAVAKFLEE-HEAVEWV  319 (431)
T ss_pred             hhhHHHHHHHHHHHhcCCCCCHHHHHHHhc--CcCcHHHHHHHHHHHHHHHHHHHHh-CCCcceE
Confidence                    0001112344456667776655  4677888999999999999999999 8987643

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.83  E-value=3.5e-18  Score=169.01  Aligned_cols=237  Identities=14%  Similarity=0.124  Sum_probs=159.4

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHH----HHHHcCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS----CAAVCGL  190 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~----~~~~~g~  190 (480)
                      +++.+.++++.|.+  ..+++++|+.|+..++.++..              +|+ +|+++...|.+...    .+...|+
T Consensus        72 ~~le~~la~l~g~~--~~v~fsSG~~Ai~~al~~ll~--------------~Gd-~VI~~~~~y~~t~~~~~~~l~~~Gi  134 (437)
T PRK05613         72 EALENRIASLEGGV--HAVAFASGQAAETAAILNLAG--------------AGD-HIVTSPRLYGGTETLFLVTLNRLGI  134 (437)
T ss_pred             HHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHhcC--------------CCC-EEEECCCccHHHHHHHHHHHHhcCe
Confidence            34555688999885  367777778888877766532              556 78888889988743    3355566


Q ss_pred             CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccc
Q psy12303        191 GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLS  270 (480)
Q Consensus       191 ~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~  270 (480)
                         ++.+++ +.   .|+++++++++++      |++|++++++|++|.+.|+++|+++|+++|+.+|||++++.+... 
T Consensus       135 ---~v~~vd-~~---~d~e~l~~~l~~~------tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~~-  200 (437)
T PRK05613        135 ---EVTFVE-NP---DDPESWQAAVQPN------TKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALV-  200 (437)
T ss_pred             ---EEEEEC-CC---CCHHHHHHhCCcc------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCcccccc-
Confidence               778886 32   2899999999876      889999999999999999999999999999999999999877653 


Q ss_pred             ccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhh-Hhhh--cCCcccccccccccC--cccCCC-------
Q psy12303        271 KKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLL-ISCN--QMSAEYLFMQDKLYD--VRYDTG-------  337 (480)
Q Consensus       271 ~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~--~~~~~~-------  337 (480)
                      ....+       ++|++++|+||+++++ -+.|++++.+.... ....  ....+++...+....  ...+.+       
T Consensus       201 ~p~~~-------GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (437)
T PRK05613        201 RPLEL-------GADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLK  273 (437)
T ss_pred             ChHHh-------CCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHH
Confidence            22244       8999999999999864 24466666433211 0000  000011101000000  000000       


Q ss_pred             ---CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        338 ---DKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       338 ---~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                         .+....|-..+...+|+.++  |.+.+..+++++.+++..+.+.|++ +|.+.-+
T Consensus       274 ~~~~~~~~~G~~~~p~~a~l~~r--gl~TL~lR~~~~~~nA~~lA~~L~~-hp~V~~V  328 (437)
T PRK05613        274 ARAGLLRDTGATLSPFNAWVTAQ--GLDTLSLRLERHNENAIKVAEFLNN-HEKVAKV  328 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHc--ccCcHHHHHHHHHHHHHHHHHHHHc-CCCcceE
Confidence               01112233456677776665  4677888999999999999999999 8887533

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.83  E-value=4.9e-19  Score=171.97  Aligned_cols=233  Identities=14%  Similarity=0.026  Sum_probs=163.7

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA  185 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~  185 (480)
                      ..|...++|+.    ++++.|.+  .++.++||++|+..++. +..              ||+ +|+++...|......+
T Consensus        52 ~~p~~~~le~~----lA~leg~~--~~v~~~sG~aAi~~~l~-~l~--------------~GD-~VI~~~~~yg~~~~~~  109 (364)
T PRK07269         52 KNPTRAKLEET----LAAIESAD--YALATSSGMSAIVLAFS-VFP--------------VGS-KVVAVRDLYGGSFRWF  109 (364)
T ss_pred             CCccHHHHHHH----HHHHhCCC--eEEEeCCHHHHHHHHHH-HhC--------------CCC-EEEEecCCcCchHHHH
Confidence            44555666655    77777765  48999999999998884 332              556 5666655554433322


Q ss_pred             HHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccc
Q psy12303        186 AVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGG  265 (480)
Q Consensus       186 ~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~  265 (480)
                      ....... .+ .+    ++..|+++++++++++      |++|++++|+||+|.+.|+++|+++|+++|+++++|++|+.
T Consensus       110 ~~~~~~~-~~-~~----~~~~d~~~l~~~i~~~------TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~  177 (364)
T PRK07269        110 NQQEKEG-RF-HF----TYANTEEELIAAIEED------TDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYS  177 (364)
T ss_pred             HHHHhcC-cE-EE----EecCCHHHHHHhcCcC------ceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcc
Confidence            2211100 11 11    1235899999999765      89999999999999999999999999999999999999876


Q ss_pred             cccccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccC
Q psy12303        266 GLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQC  343 (480)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  343 (480)
                      +....+ ...       ++|+++.|++|+++++..  .|+++++++++.+...... .+                    .
T Consensus       178 ~~~~~p-l~~-------gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~-~~--------------------~  228 (364)
T PRK07269        178 PIYQRP-IEL-------GADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNL-NT--------------------T  228 (364)
T ss_pred             cccCCc-hhh-------CCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHH-HH--------------------h
Confidence            543222 233       899999999999997654  5666766665544332100 00                    1


Q ss_pred             CCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEE-ecCCceeEEEEEe
Q psy12303        344 GRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYL-ILEPEMVNVSFWY  404 (480)
Q Consensus       344 ~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~-~~~~~~~~v~f~~  404 (480)
                      |.....+.+|..++.  .+.+..++++..+++..+.+.|++ +|++.- +-++..++++|..
T Consensus       229 G~~~s~~~a~l~~~~--L~tL~~r~~~~~~na~~~a~~L~~-~p~v~~v~ypg~gg~~sf~~  287 (364)
T PRK07269        229 GAVLSPFDSYLLMRG--LKTLSLRMERSTANAQEVVAFLKK-SPAVKEVLYTGKGGMISFKV  287 (364)
T ss_pred             CCCCCHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHHh-CCCccEEeCCCcCcEEEEEE
Confidence            222456677777665  456888999999999999999999 898754 4477788888875

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.83  E-value=8.9e-18  Score=164.38  Aligned_cols=282  Identities=14%  Similarity=0.088  Sum_probs=184.7

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCe
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNC  195 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v  195 (480)
                      ++++.+++.++.+++++++|+|+++++..++.++.+              ||+ .|++..++|+.+...+...|.   .+
T Consensus        69 ~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~~~--------------~gd-~V~v~~P~y~~~~~~~~~~g~---~~  130 (357)
T PRK14809         69 DLTAALADRWDVSPEQVWLANGGDGALDYLARAMLD--------------PGD-TVLVPDPGFAYYGMSARYHHG---EV  130 (357)
T ss_pred             HHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcC--------------CCC-EEEEeCCChHHHHHHHHHcCC---eE
Confidence            466677888899888999999999999888877654              556 788888888877777888887   67


Q ss_pred             EEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHc--CcEEEeeccccccccccc
Q psy12303        196 VEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY--NMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       196 ~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~--~~~l~vD~a~~~~~~~~~  271 (480)
                      +.+|++.  ++.++.+++++..+ .      +++|++++++||||.+.+.+++.++++..  ++++++|++|+.......
T Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~-~------~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~  203 (357)
T PRK14809        131 REYPVSKADDFEQTADTVLDAYD-G------ERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERPS  203 (357)
T ss_pred             EEEecccCcCCCcCHHHHHHhhc-C------CcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCch
Confidence            7777753  46777777766542 1      67899999999999999988888777654  789999999987653111


Q ss_pred             cccCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCch
Q psy12303        272 KYRHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIF  350 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l  350 (480)
                      .  .+..... .--+++.|++|.++ .+..+|+++.. ++.+........++.                       ...+
T Consensus       204 ~--~~~~~~~-~~vi~~~SfSK~~~~~GlRiG~~~~~-~~~~~~~~~~~~~~~-----------------------~~~~  256 (357)
T PRK14809        204 A--VALVEER-DDVAVLRTFSKAYGLAGLRLGYAVVP-EEWADAYARVNTPFA-----------------------ASEL  256 (357)
T ss_pred             h--HHHHhhC-CCEEEEecchhHhcCcchhheeeecC-HHHHHHHHHhCCCCC-----------------------CCHH
Confidence            0  0011111 11245668999997 45789998864 344444332211110                       1233


Q ss_pred             HHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHH
Q psy12303        351 KLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILK  429 (480)
Q Consensus       351 ~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~  429 (480)
                      ...+++..+ ..+.+++..+...+..+.+.+.|.. . .   + ++. +++.|.-.+ .                ..++.
T Consensus       257 ~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~-~-~---~-~~~-g~f~~~~~~-~----------------~~~~~  312 (357)
T PRK14809        257 ACRAGLAALDDDEHVERTVETARWAREYIREELDA-P-T---W-ESA-GNFVLAEVG-D----------------ASAVA  312 (357)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcC-c-c---C-CCC-CCEEEEECC-C----------------HHHHH
Confidence            344444444 2344566666677777777777765 2 1   1 333 344332111 0                13456


Q ss_pred             HHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        430 GRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       430 ~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      +.+.+.|+.+... ...+..+++|+++.    +.+++++++++|+++++
T Consensus       313 ~~l~~~gv~v~~g-~~f~~~~~iRls~~----~~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        313 EAAQERGVIVRDC-TSFGLPECIRITCG----TREETERAVEVLNEVLA  356 (357)
T ss_pred             HHHHHCCEEEEEC-ccCCCCCeEEEecC----CHHHHHHHHHHHHHHhc
Confidence            6777777544443 33333579999943    47899999999998765

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.83  E-value=1.6e-17  Score=162.74  Aligned_cols=288  Identities=13%  Similarity=0.037  Sum_probs=185.7

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCe
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNC  195 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v  195 (480)
                      ++++.+++.++++++++++|+|+++++..++.+..               +|+ .|++..++++.+...++.+|+   ++
T Consensus        61 ~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l~---------------~g~-~vlv~~P~y~~~~~~~~~~g~---~~  121 (360)
T PRK07392         61 ELRLALAQHHQLPPEWILPGNGAAELLTWAGRELA---------------QLR-AVYLITPAFGDYRRALRAFGA---TV  121 (360)
T ss_pred             HHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhC---------------CCC-eEEEECCCcHHHHHHHHHcCC---eE
Confidence            56666777789988899999999999988876542               335 788899999999999999998   88


Q ss_pred             EEeeCCCCCC-----CCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccc
Q psy12303        196 VEVPSDKRGR-----LIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLS  270 (480)
Q Consensus       196 ~~v~~~~~~~-----~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~  270 (480)
                      +.+|.+.++.     .+++++++..       .+++++++++++||||.+.+.++|.++++++++ +++|++|..+....
T Consensus       122 ~~v~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~  193 (360)
T PRK07392        122 KELPLPLDQPSPGLTLRLQTLPPQL-------TPNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPD  193 (360)
T ss_pred             EEEecccccCCcccccCHHHHHHhc-------cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCc
Confidence            8999875433     3444444322       127899999999999999999999999999985 67799998765421


Q ss_pred             cccc-CcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCC
Q psy12303        271 KKYR-HPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHND  348 (480)
Q Consensus       271 ~~~~-~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~  348 (480)
                      .... ...+... .--+++.|++|.++ .+..+|+++.. ...++........+-                       ..
T Consensus       194 ~~~s~~~~~~~~-~~vi~i~S~SK~~~l~GlRiG~~v~~-~~~~~~~~~~~~~~~-----------------------~s  248 (360)
T PRK07392        194 AEQSLIPCLAEY-PNLIILRSLTKFYSLPGLRLGYAIAH-PDRLQRWQQWRDPWP-----------------------VN  248 (360)
T ss_pred             cccchHHHhhcC-CCEEEEEechhhhcCCchheeeeeCC-HHHHHHHHhhCCCCC-----------------------CC
Confidence            1000 0011111 11256669999998 55889999864 444443321111100                       12


Q ss_pred             chHHHHHHHHhcH-HHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHH
Q psy12303        349 IFKLWLQWRAKGD-EGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPI  427 (480)
Q Consensus       349 ~l~~~~~l~~~g~-~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~  427 (480)
                      .+..+++...+.. +..+...+...+.++++.+.|++ ++++.+.  +..+.+.+.-.+..                ..+
T Consensus       249 ~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~--~~~~~fl~~~~~~~----------------~~~  309 (360)
T PRK07392        249 GLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLAS-LPGLTPL--PSAANFLLVQSQGS----------------ALQ  309 (360)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh-CCCcEEC--CCCCCEEEEEcCCC----------------HHH
Confidence            3333433333322 33344456667788889999998 8898864  34455544222110                134


Q ss_pred             HHHHHH-hcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        428 LKGRMM-QAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       428 i~~~l~-~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      +...+. +.|+.+.....+.+ ..+++|+++.    +.++.+++.+.|+++.+
T Consensus       310 l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~----~~~~~~~l~~al~~~~~  358 (360)
T PRK07392        310 LQEKLLQQHRILIRDCLSFPELGDRYFRVAVR----TEAENQRLLEALAAILA  358 (360)
T ss_pred             HHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeC----CHHHHHHHHHHHHHHhh
Confidence            556654 45654443332222 1479999954    35667788888877654

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.83  E-value=8.8e-18  Score=164.88  Aligned_cols=295  Identities=11%  Similarity=0.018  Sum_probs=187.5

Q ss_pred             chhcChhhHHHHHHHHHHHHHHhC---CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCch
Q psy12303        103 TYEIAPVFILMETVVLEKMRQIIG---WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHY  179 (480)
Q Consensus       103 ~~~~~~~~~~~e~~~~~~la~~~g---~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~  179 (480)
                      .|....+..++.+.+.+++.+..|   ++++++++|+|+++++..++.++.-.             ||+ .|+++.++|+
T Consensus        57 ~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~-------------~gd-~Vl~~~p~y~  122 (364)
T PRK07865         57 GYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLG-------------PGD-VVVIPELAYP  122 (364)
T ss_pred             CCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcCC-------------CCC-EEEECCCCcc
Confidence            455455667888888999988776   44689999999999988766555211             555 7889999999


Q ss_pred             hHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCcE
Q psy12303        180 SVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMW  256 (480)
Q Consensus       180 s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~  256 (480)
                      .+..+++.+|.   +++.++       +++++++   +      ++++|++++++||||.+.+   +++|.++|+++|++
T Consensus       123 ~~~~~~~~~g~---~~~~~~-------~~~~l~~---~------~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~  183 (364)
T PRK07865        123 TYEVGARLAGA---TVVRAD-------SLTELGP---Q------RPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAV  183 (364)
T ss_pred             cHHHHHHhcCC---EEEecC-------ChhhCCc---c------cceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence            99999999988   665553       2333322   1      2789999999999998865   67888899999999


Q ss_pred             EEeeccccccccccccccC--cccCCC-CCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCc
Q psy12303        257 LHVDAAWGGGLLLSKKYRH--PRLTGI-ERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDV  332 (480)
Q Consensus       257 l~vD~a~~~~~~~~~~~~~--~~~~~~-~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  332 (480)
                      +++|++|+......+....  +...+. ..-.+++.|++|.++.| ..+|+++. +++...............       
T Consensus       184 ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~-~~~~~~~~~~~~~~~~~~-------  255 (364)
T PRK07865        184 VASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAG-DPALVAELLEVRKHAGMM-------  255 (364)
T ss_pred             EEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEec-CHHHHHHHHHHHHhcCCC-------
Confidence            9999999875432111000  000010 12237788999998644 67888764 555544332111000000       


Q ss_pred             ccCCCCccccCCCCCCchHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCC
Q psy12303        333 RYDTGDKVIQCGRHNDIFKLWLQWRAKG-DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRN  411 (480)
Q Consensus       333 ~~~~~~~~~~~~r~~~~l~~~~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~  411 (480)
                                    ...+...+....+. .+.+++..+...+..+.+.+.|++ . |+.+. .|..+.+.+...+..   
T Consensus       256 --------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~~~~~~~~~~~~~---  315 (364)
T PRK07865        256 --------------VPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEA-A-GFRVD-HSEAGLYLWATRGED---  315 (364)
T ss_pred             --------------cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH-c-CCccc-CCCccEEEEEeCCCC---
Confidence                          11222222223232 344566777778888999999998 4 77753 455565544321110   


Q ss_pred             CchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        412 MPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       412 ~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                                   ..++.+.|.+.|+.+.....+.. ..+++|+++..   +++++++.+++|+
T Consensus       316 -------------~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~---~~~~~~~~~~~l~  363 (364)
T PRK07865        316 -------------CWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTA---TDERIAAAVERLA  363 (364)
T ss_pred             -------------HHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecC---CHHHHHHHHHHhh
Confidence                         12455677788865544322211 25799999543   6899999998875

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.82  E-value=1.3e-17  Score=161.50  Aligned_cols=273  Identities=12%  Similarity=0.101  Sum_probs=181.8

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCe
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNC  195 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v  195 (480)
                      ++++++++++|.+++++++|+|+++++..++.+.                +|+ .|+++.+.|..+...++..|.   ++
T Consensus        59 ~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~----------------~gd-~V~v~~P~y~~~~~~~~~~g~---~~  118 (337)
T PRK03967         59 PLREAIAEFYGLDAENIAVGNGSDELISYLVKLF----------------EGK-HIVITPPTFGMYSFYAKLNGI---PV  118 (337)
T ss_pred             HHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHh----------------CCC-eEEEeCCChHHHHHHHHHcCC---eE
Confidence            4566788888898889999999999887655432                335 788888999888888888888   88


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccC
Q psy12303        196 VEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH  275 (480)
Q Consensus       196 ~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~  275 (480)
                      +.++.++++.+|++++++.+. .      ++++++++|+||||.+.+.++|.++++ +++++++|++|..+..  .....
T Consensus       119 ~~v~~~~~~~~d~~~l~~~~~-~------~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~~--~~~~~  188 (337)
T PRK03967        119 IDVPLKEDFTIDGERIAEKAK-N------ASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFSG--KSLIG  188 (337)
T ss_pred             EEeecCCCCCcCHHHHHHhcc-C------CCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhcc--cchHH
Confidence            999998778899999987642 2      678889999999999999999999995 7999999999986531  11000


Q ss_pred             cccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHH
Q psy12303        276 PRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWL  354 (480)
Q Consensus       276 ~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~  354 (480)
                       ..... .--+++.|++|.++ .+..+|+++.. +............+-                       ...+...+
T Consensus       189 -~~~~~-~~vi~l~S~SK~~~l~GlRiG~iv~~-~~~i~~~~~~~~~~~-----------------------~~~~~q~~  242 (337)
T PRK03967        189 -LIDEY-PNLILLRTFSKAFGLAGIRAGYAIAN-EEIIDALYRIKPPFS-----------------------LNILTMKI  242 (337)
T ss_pred             -HHhhC-CCEEEEecchHhhcchhhhheeeecC-HHHHHHHHhhcCCCC-----------------------CCHHHHHH
Confidence             11111 11256679999998 45789999864 444444332221110                       12223333


Q ss_pred             HHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH
Q psy12303        355 QWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM  433 (480)
Q Consensus       355 ~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~  433 (480)
                      +...+ ..+.+.+..++..+.++.+.+.|.+ .      ..|..+.+++..                +     .+.+.|.
T Consensus       243 ~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~-~------~~~~~~~~~~~~----------------~-----~~~~~l~  294 (337)
T PRK03967        243 VRLALDHYDLIEERIDYIIKERERVRRELGE-Y------AYPSDANFLLLK----------------L-----DAYDYLL  294 (337)
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHhcc-C------cCCCCCcEEEEh----------------H-----HHHHHHH
Confidence            32222 2334555556666777778888776 3      124444444421                1     2457777


Q ss_pred             hcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        434 QAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       434 ~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      ++|+.+... .... .+++|+++.    +.++.+++++.|+++.+
T Consensus       295 ~~gi~v~~~-~~~~-~~~~Ri~~~----~~~~~~~l~~~l~~~~~  333 (337)
T PRK03967        295 ENGIVVRKL-SGRL-EGHIRVTVG----KREENDEFIKALKEIKE  333 (337)
T ss_pred             HCCEEEEeC-CCCC-CCeEEEecC----CHHHHHHHHHHHHHHHH
Confidence            888544332 2122 569999944    57888888888887654

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.82  E-value=8.7e-18  Score=166.36  Aligned_cols=237  Identities=18%  Similarity=0.132  Sum_probs=156.7

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH-cCCCCCC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV-CGLGTDN  194 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~-~g~~~~~  194 (480)
                      ++.+.++++.|.+.  .+++++|++|+..++.++..              ||+ .|+++...|......+.. +..-..+
T Consensus        62 ~Le~~lA~l~g~~~--~l~~ssG~~Ai~~al~al~~--------------~Gd-~Vl~~~~~Y~~t~~~~~~~l~~~gi~  124 (425)
T PRK06084         62 VLEQRVAALEGGVG--ALAVASGMAAITYAIQTIAE--------------AGD-NIVSVAKLYGGTYNLLAHTLPRIGIE  124 (425)
T ss_pred             HHHHHHHHHhCCCc--eeEehhHHHHHHHHHHHHhC--------------CCC-EEEEeCCCcchHHHHHHHhcccceeE
Confidence            34455888888654  78899999999999987754              556 667776666644444432 2111115


Q ss_pred             eEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccccccc
Q psy12303        195 CVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYR  274 (480)
Q Consensus       195 v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~  274 (480)
                      +.+++.     .|+++++++++++      +++|++++++||+|.+.|+++|.++|+++|+++++|++|+.+....+ ..
T Consensus       125 v~~~d~-----~d~e~le~ai~~~------tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~~p-~~  192 (425)
T PRK06084        125 TRFAAH-----DDIAALEALIDER------TKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCRP-FE  192 (425)
T ss_pred             EEEECC-----CCHHHHHHHhccC------CcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCh-hh
Confidence            555554     3899999999765      88999999999999999999999999999999999999987654322 23


Q ss_pred             CcccCCCCCCccceeCccccCCCcc-cceEEEEeCchh-hHhhhcCCcccccccccccCcc---cCCC----------Cc
Q psy12303        275 HPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGL-LISCNQMSAEYLFMQDKLYDVR---YDTG----------DK  339 (480)
Q Consensus       275 ~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~---~~~~----------~~  339 (480)
                      +       ++|+++.|++|+++++. ..|++++.+... ...... ....+...+..+...   ...+          ..
T Consensus       193 ~-------gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  264 (425)
T PRK06084        193 H-------GADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKE-RFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVP  264 (425)
T ss_pred             c-------CCCEEEECchhcccccccceeEEEEeCCccchhhccc-cccccccCCcccccchhhhhcchHHHHHHHHHHH
Confidence            3       79999999999998763 345555543221 111000 000111100000000   0000          00


Q ss_pred             cccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        340 VIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       340 ~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      ....+.......+|+.++.  .+.+..++++..+++..+.+.|++ +|++.-+
T Consensus       265 ~~~~g~~l~~~~a~l~lrg--l~tl~~R~~~~~~na~~la~~L~~-~p~v~~V  314 (425)
T PRK06084        265 LRNMGAALSPFNAFLILQG--LETLALRMERHTENALKVARYLQQ-HPQVAWV  314 (425)
T ss_pred             HHhcCCCCCHHHHHHHHcC--cCcHHHHHHHHHHHHHHHHHHHHh-CCCccEE
Confidence            1123444566777777654  677899999999999999999999 8987644

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.82  E-value=4.1e-18  Score=169.33  Aligned_cols=325  Identities=12%  Similarity=0.021  Sum_probs=204.3

Q ss_pred             HHHHHHHHcC-cCCcchhcChhhHHHHHHHHHHHHHHhC--CCCCCeE--ECCChhHHHHHHHHHHHHhcCchhHhcCCC
Q psy12303         89 AGEWLIATAN-TNMFTYEIAPVFILMETVVLEKMRQIIG--WQGGDSI--LAPGGSISNLYAFLAARHKMFPTYKEKGLS  163 (480)
Q Consensus        89 ~~~~l~~~~~-~~~~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~--~t~ggt~a~~~al~~~~~~~~~~~~~~g~~  163 (480)
                      +.+.+..... .....|....+..++.+++.+|+.+..+  .++++++  .|.|++.|...++.+++.-.          
T Consensus        52 ~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~----------  121 (404)
T PTZ00376         52 VRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFL----------  121 (404)
T ss_pred             HHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhc----------
Confidence            3344433332 2235576667778888888888765543  3556677  49999999888876543210          


Q ss_pred             ccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCC--CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc
Q psy12303        164 AIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD--KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD  241 (480)
Q Consensus       164 ~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~  241 (480)
                       .||+ .|++.+++|+.+...++.+|+   +++.+|..  +++.+|++.+++++++..   .+++++++++++||||.+.
T Consensus       122 -~~Gd-~Vlv~~P~y~~~~~~~~~~G~---~~~~v~l~~~~~~~~d~~~l~~~~~~~~---~~~~~~~~~~p~NPTG~~~  193 (404)
T PTZ00376        122 -PAGT-TVYVSNPTWPNHVNIFKSAGL---NVKEYRYYDPKTKGLDFDGMLEDLRTAP---NGSVVLLHACAHNPTGVDP  193 (404)
T ss_pred             -CCCC-EEEEcCCCchhHHHHHHHcCC---ceeeccccCcccCCcCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCC
Confidence             1556 899999999999999999998   88889983  347899999999986431   1257888899999999996


Q ss_pred             C---hHHHHHHHHHcCcEEEeeccccccccccc--cc-cCcccCCCCCCccceeCccccCC-CcccceEEE--EeCchhh
Q psy12303        242 P---IEEIADICQKYNMWLHVDAAWGGGLLLSK--KY-RHPRLTGIERADSVTWNPHKLMG-TLLQCSTIH--FKQDGLL  312 (480)
Q Consensus       242 ~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~--~~-~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~--~~~~~~~  312 (480)
                      +   +++|.++|++|++++++|++|........  .. ....+.....--+++.|++|.++ .+..+|+++  +.+++..
T Consensus       194 s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~  273 (404)
T PTZ00376        194 TEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCANKEEA  273 (404)
T ss_pred             CHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCCHHHH
Confidence            5   67788889999999999999987654210  00 00011111011256678999999 458899985  3555433


Q ss_pred             HhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcH--------HHHHHHHHHHHHHHHHHHHHHhc
Q psy12303        313 ISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGD--------EGFEKQIDRLMELAEYMVKKIKS  384 (480)
Q Consensus       313 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~--------~~~~~~~~~~~~l~~~l~~~l~~  384 (480)
                      .........+....            +.  +   ...+...++...+..        +.+++..++..+.++.+.+.|++
T Consensus       274 ~~l~~~~~~~~~~~------------~~--~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~  336 (404)
T PTZ00376        274 ANVLSQLKLIIRPM------------YS--S---PPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKA  336 (404)
T ss_pred             HHHHHHHHHHHhhh------------cC--C---CchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22110000000000            00  0   112233333332211        22445556778888899999988


Q ss_pred             CCC---CeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCC
Q psy12303        385 MPD---KFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAV  461 (480)
Q Consensus       385 ~~~---g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~  461 (480)
                       ..   ++.. ..|+.+.+.|.-.                   ..++.++|.++..+++.++      +  |+++..  .
T Consensus       337 -~~~~~~~~~-~~p~gg~f~~~~~-------------------~~~~~~~L~~~~~v~v~p~------~--Ris~~~--~  385 (404)
T PTZ00376        337 -LGSPGDWEH-IINQIGMFSFTGL-------------------TKEQVERLIEKYHIYLLDN------G--RISVAG--L  385 (404)
T ss_pred             -cCCCCcccc-cccCceEEEecCC-------------------CHHHHHHHHHhCCEeecCC------C--eEEEec--c
Confidence             42   2443 2566776666311                   1245667777743555441      2  999533  6


Q ss_pred             CHHHHHHHHHHHHHhhcc
Q psy12303        462 TEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       462 t~~di~~~~~~l~~~~~~  479 (480)
                      ++++++.++++|++++..
T Consensus       386 ~~~~~~~~~~~l~~~~~~  403 (404)
T PTZ00376        386 TSKNVDYVAEAIHDVVRN  403 (404)
T ss_pred             CHHhHHHHHHHHHHHHhc
Confidence            899999999999988754

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.82  E-value=9e-19  Score=171.12  Aligned_cols=225  Identities=16%  Similarity=0.123  Sum_probs=159.9

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHH----HHHHcCCC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS----CAAVCGLG  191 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~----~~~~~g~~  191 (480)
                      ++.+.++++.|.+.  .++++||++|+..++ .+..              ||+ .|+++...|++...    .+...|+ 
T Consensus        56 ~le~~la~l~g~~~--~~~~~sG~~ai~~~~-~ll~--------------~Gd-~Vl~~~~~y~~t~~~~~~~~~~~G~-  116 (366)
T PRK08247         56 VLEQAIADLEGGDQ--GFACSSGMAAIQLVM-SLFR--------------SGD-ELIVSSDLYGGTYRLFEEHWKKWNV-  116 (366)
T ss_pred             HHHHHHHHHhCCCc--EEEEcCHHHHHHHHH-HHhC--------------CCC-EEEEecCCcCcHHHHHHHHhhccCc-
Confidence            34455999999976  588889999887654 3322              556 67777777775433    3444666 


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                        +++.++..     |+++++++++++      +++|++++|+||+|.+.++++|.++|+++|+++++|++|+.+....+
T Consensus       117 --~v~~vd~~-----d~~~l~~~i~~~------tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p  183 (366)
T PRK08247        117 --RFVYVNTA-----SLKAIEQAITPN------TKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRP  183 (366)
T ss_pred             --eEEEECCC-----CHHHHHHhcccC------ceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCc
Confidence              77777753     899999998765      89999999999999999999999999999999999999976544322


Q ss_pred             cccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCc
Q psy12303        272 KYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI  349 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~  349 (480)
                       ...       ++|+++.|++|+++++.+  .|+++.+++.+........ .+                    .+.....
T Consensus       184 -~~~-------g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~-~~--------------------~g~~~s~  234 (366)
T PRK08247        184 -LEE-------GADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQ-NA--------------------AGAVLSP  234 (366)
T ss_pred             -hhc-------CCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHH-Hh--------------------cCCCCCh
Confidence             122       789999999999997543  4655554444433222100 00                    0111233


Q ss_pred             hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC-ceeEEEEEe
Q psy12303        350 FKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP-EMVNVSFWY  404 (480)
Q Consensus       350 l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~-~~~~v~f~~  404 (480)
                      ...|+.++.  .+.+..++++..++++.+.+.|++ +|++..+..| ..++++|.+
T Consensus       235 ~~a~l~~~~--l~tl~~r~~~~~~~a~~l~~~L~~-~p~v~~v~~P~~gg~~sf~~  287 (366)
T PRK08247        235 FDSWLLIRG--MKTLALRMRQHEENAKAIAAFLNE-QPGVTDVLYPGRGGMLSFRL  287 (366)
T ss_pred             HHHHHHHhc--cCcHHHHHHHHHHHHHHHHHHHHh-CCCeeEEecCCcCcEEEEEE
Confidence            456666554  446677788889999999999999 8998754444 788888864

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.82  E-value=1.3e-17  Score=165.23  Aligned_cols=305  Identities=13%  Similarity=0.057  Sum_probs=174.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEE-ecCCCchhHHHHHHHcCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMF-TSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl-~~~~~h~s~~~~~~~~g~  190 (480)
                      ....++.+.++++.+.  +.+++++|||+|+..++++++...    ...|.   +++..|+ .....|.+...+....+.
T Consensus        73 ~~~~~la~~l~~~~~~--~~v~~~~sGseA~~~al~~ar~~~----~~~G~---~~r~~vi~~~~~yhg~~~~~~~~~~~  143 (389)
T PRK01278         73 PEQERLAERLVENSFA--DKVFFTNSGAEAVECAIKTARRYH----YGKGH---PERYRIITFEGAFHGRTLATIAAGGQ  143 (389)
T ss_pred             hHHHHHHHHHHhhCCC--CEEEEcCCcHHHHHHHHHHHHHHH----HhcCC---CCCCEEEEECCCcCCCcHHHHhccCC
Confidence            3344566777777654  369999999999999999998631    11232   1222444 444555554444433332


Q ss_pred             CCCCeEEeeCCCCCC----CCHHHHHHHHHHHHHCCCccEEEEeccCCCccccc----cChHHHHHHHHHcCcEEEeecc
Q psy12303        191 GTDNCVEVPSDKRGR----LIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAF----DPIEEIADICQKYNMWLHVDAA  262 (480)
Q Consensus       191 ~~~~v~~v~~~~~~~----~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~----~~l~~I~~i~~~~~~~l~vD~a  262 (480)
                      ....-.+.|..++..    .|+++++++++++      +++|+++..++++|.+    +.+++|.++|++||+++++|++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv  217 (389)
T PRK01278        144 EKYLEGFGPLVPGFDQVPFGDIEALKAAITPN------TAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEV  217 (389)
T ss_pred             hhhcccCCCCCCCceEeCCCCHHHHHHhhCCC------eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence            100000012111211    4899999988653      8999999888888844    3599999999999999999999


Q ss_pred             ccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcccc
Q psy12303        263 WGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQ  342 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  342 (480)
                      |++.......... ...++ ..|.++  +.|.++++++.|+++.++. ..+......     .          ..++   
T Consensus       218 ~~g~g~~g~~~~~-~~~~~-~pdi~t--~sK~l~~G~~ig~~~~~~~-~~~~~~~~~-----~----------~~t~---  274 (389)
T PRK01278        218 QCGMGRTGKLFAH-EWAGV-TPDIMA--VAKGIGGGFPLGACLATEE-AAKGMTPGT-----H----------GSTY---  274 (389)
T ss_pred             ccCCCcCCcceee-cccCC-CCCEEE--EehhccCCcceEEEEEcHH-HHhccCCCC-----C----------CCCC---
Confidence            9975432221111 12244 467655  6799987678899887543 332211000     0          0000   


Q ss_pred             CCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeEEEEEeecCccCCCchhhHHH
Q psy12303        343 CGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLN  419 (480)
Q Consensus       343 ~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~  419 (480)
                      ++......++.++++.+-.+   +..++..++.+++.+.|++.   .+++.....+....+.+.+. ..           
T Consensus       275 ~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v~g~G~~~~i~~~-~~-----------  339 (389)
T PRK01278        275 GGNPLAMAVGNAVLDVILAP---GFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCV-VP-----------  339 (389)
T ss_pred             CccHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHhhCCCceeeEecccEEEEEEEe-cC-----------
Confidence            11112222333334443222   23344555555555555430   33221111222222222221 10           


Q ss_pred             HhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        420 ILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       420 ~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                           ..++.+.|.++|+++...    + .+++|++ ++..+++++|++++++|++++++|
T Consensus       340 -----~~~~~~~l~~~GV~~~p~----~-~~~lR~~-p~~~~~~~~i~~~l~~l~~~l~~~  389 (389)
T PRK01278        340 -----NRDLVQALRDEGLLTVGA----G-DNVVRLL-PPLIITEEEIDEALERLERAAESL  389 (389)
T ss_pred             -----HHHHHHHHHHCCeEEeec----C-CCEEEEe-CCcccCHHHHHHHHHHHHHHHHhC
Confidence                 235677888888554332    2 4799999 777789999999999999988764

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.82  E-value=1.2e-17  Score=161.61  Aligned_cols=270  Identities=14%  Similarity=0.093  Sum_probs=180.2

Q ss_pred             HHHHHHHHhC---CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        117 VLEKMRQIIG---WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       117 ~~~~la~~~g---~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      +++.+++.++   .++.++++|+|+++++..++.+.                  + .|++..++|+.+..+++.+|.   
T Consensus        61 Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~------------------d-~v~v~~P~y~~~~~~~~~~g~---  118 (335)
T PRK14808         61 LIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF------------------D-RSVFFPPTYSCYRIFAKAVGA---  118 (335)
T ss_pred             HHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh------------------C-cEEECCCCHHHHHHHHHHcCC---
Confidence            4455555555   77889999999999998888654                  2 477788999999999999998   


Q ss_pred             CeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccc
Q psy12303        194 NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       194 ~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~  273 (480)
                      +++.+|.++++.++...    +.       .+++|++++|+||||.+.+.+++.+++ ++++++++|++|..+.-  .. 
T Consensus       119 ~~~~v~~~~~~~~~~~~----~~-------~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~--~~-  183 (335)
T PRK14808        119 KFLEVPLTKDLRIPEVN----VG-------EGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHG--ES-  183 (335)
T ss_pred             eEEEecCCCcCCCChhH----cc-------CCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhcC--Cc-
Confidence            88999998777665332    11       167999999999999999999999998 58999999999987531  11 


Q ss_pred             cCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHH
Q psy12303        274 RHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL  352 (480)
Q Consensus       274 ~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~  352 (480)
                      ..+.+... .--+++.|++|.++ .+..+|+++.. ++.++........+-.                   +. .....+
T Consensus       184 ~~~~~~~~-~~vi~~~S~SK~~~l~GlRvG~~v~~-~~~~~~l~~~~~~~~~-------------------~~-~~q~a~  241 (335)
T PRK14808        184 YVDLLKKY-ENLAVIRTFSKAFSLAAQRIGYVVSS-EKFIDAYNRVRLPFNV-------------------SY-VSQMFA  241 (335)
T ss_pred             hHHHHHhC-CCEEEEEechhhccCcccceEEEEeC-HHHHHHHHHhcCCCCC-------------------CH-HHHHHH
Confidence            01112211 12356678999999 45789998864 4455443322211100                   00 111122


Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHH
Q psy12303        353 WLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRM  432 (480)
Q Consensus       353 ~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l  432 (480)
                      ..++.  ..+.+.+..+...+..+.+.+.|++ . |+++. +|..+.+.+ ..+.. .              ..++.++|
T Consensus       242 ~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~-~-g~~~~-~~~g~f~~~-~l~~~-~--------------~~~~~~~l  300 (335)
T PRK14808        242 KVALD--HREIFEERTKFIVEERERMKSALRE-M-GYRIT-DSRGNFVFI-FMEKE-E--------------KERLLEHL  300 (335)
T ss_pred             HHHHh--CHHHHHHHHHHHHHHHHHHHHHHHH-C-CCEEC-CCCCeEEEE-eCCCc-c--------------HHHHHHHH
Confidence            22232  2345566667777778889999998 4 78764 565554433 23211 0              13567888


Q ss_pred             HhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        433 MQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       433 ~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      .+.|+.+...      ..++|+++.    +.++.++++++|++.
T Consensus       301 ~~~Gi~V~~~------~~~~Risi~----~~~~~~~~~~~l~~~  334 (335)
T PRK14808        301 RAKNIAVRSF------REGVRITIG----KREENDMILKELEVF  334 (335)
T ss_pred             HHCCeEEEEC------CCCeEEecC----CHHHHHHHHHHHHhh
Confidence            8888655432      258999943    579999999999754

>PLN02242 methionine gamma-lyase

Probab=99.82  E-value=5.4e-18  Score=167.46  Aligned_cols=222  Identities=14%  Similarity=0.099  Sum_probs=156.4

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA  185 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~  185 (480)
                      ..|...++|+    .+++++|.+.  +++++||++|+..++.++..              ||+ .|+++...|+.....+
T Consensus        74 ~~Pt~~~LE~----~lA~l~g~~~--~l~~~sG~~Ai~~al~al~~--------------~GD-~Vl~~~~~Y~~~~~~~  132 (418)
T PLN02242         74 FNPTVLNLGR----QMAALEGTEA--AYCTASGMSAISSVLLQLCS--------------SGG-HVVASNTLYGGTHALL  132 (418)
T ss_pred             CChhHHHHHH----HHHHHhCCCe--EEEEccHHHHHHHHHHHHhC--------------CCC-EEEEcCCcHHHHHHHH
Confidence            3455555554    4888899876  78999999999999988754              556 7788888877766654


Q ss_pred             H-----HcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEee
Q psy12303        186 A-----VCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVD  260 (480)
Q Consensus       186 ~-----~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD  260 (480)
                      .     ..|+   +++.++.+     |++++++++++.     ++++|++++++||+|.+.|+++|.++|+++|+++++|
T Consensus       133 ~~~~~~~~G~---~~~~~d~~-----d~e~l~~~i~~~-----~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livD  199 (418)
T PLN02242        133 AHFLPRKCNI---TTTFVDIT-----DLEAVKKAVVPG-----KTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVD  199 (418)
T ss_pred             HHhhhhccCc---eEEEcCCC-----CHHHHHHhcCcC-----CCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEE
Confidence            3     2444   56666543     899999988652     2889999999999999999999999999999999999


Q ss_pred             ccccccccccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCC
Q psy12303        261 AAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGD  338 (480)
Q Consensus       261 ~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  338 (480)
                      ++|+.+..  .....       ++|+++.|++|+++++..  .|+++ .++..+...........               
T Consensus       200 ea~~~~~~--~~~~~-------g~divv~S~SK~l~g~g~~~gG~iv-~~~~li~~l~~~~~~~~---------------  254 (418)
T PLN02242        200 NTFAPMVL--SPARL-------GADVVVHSISKFISGGADIIAGAVC-GPAELVNSMMDLHHGAL---------------  254 (418)
T ss_pred             CCCCccCC--CHHHc-------CCcEEEEeCccccCCCCCceEEEEE-cCHHHHHHHHHHhhhhh---------------
Confidence            99965432  22223       689999999999987643  35554 55555444322111100               


Q ss_pred             ccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        339 KVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       339 ~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                        ...+.......+|..+.  +...+..++++..++++++.+.|++ + +++++
T Consensus       255 --~~~g~~~~~~~A~l~~~--~l~tl~~r~~~~~~~a~~la~~L~~-~-~~~V~  302 (418)
T PLN02242        255 --MLLGPTMNPKVAFELSE--RLPHLSLRMKEHCRRAMEYAKRMKE-L-GLKVI  302 (418)
T ss_pred             --hccCCCCCHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHh-C-CCEEE
Confidence              00111233445555544  4456777888999999999999999 6 56765

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.82  E-value=5e-18  Score=169.97  Aligned_cols=365  Identities=12%  Similarity=0.044  Sum_probs=206.4

Q ss_pred             hHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHH-HHHHHhCC---C--CCCeEECCChhHHHHHHHHHHHHhcCchhH
Q psy12303         85 VVSMAGEWLIATANTNMFTYEIAPVFILMETVVLE-KMRQIIGW---Q--GGDSILAPGGSISNLYAFLAARHKMFPTYK  158 (480)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~-~la~~~g~---~--~~~~~~t~ggt~a~~~al~~~~~~~~~~~~  158 (480)
                      ++..+.++..+...   .+|...++..++.+++.+ ++.+..+.   +  +.++++|+|+++|+..++.++....+    
T Consensus       114 ~~~~v~e~~~~~~~---~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~l----  186 (527)
T PRK09275        114 ADEFVYELVDGIIG---DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGL----  186 (527)
T ss_pred             CCHHHHHHHHHHhc---CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhc----
Confidence            34445555555533   247767777777777776 44443332   2  23799999999999999886432110    


Q ss_pred             hcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCc
Q psy12303        159 EKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTV  236 (480)
Q Consensus       159 ~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~  236 (480)
                           ..||| .|++..+.++.+...+.+.|.+. .++.++.++  ++.+|+++|++++++.      +++|++++|+||
T Consensus       187 -----l~pGD-~Vlv~~P~y~~Y~~~~~l~g~~~-~~v~v~~~~~~~f~~d~~~l~~~~~~~------tkai~l~nP~NP  253 (527)
T PRK09275        187 -----LKAGD-KIALMTPIFTPYLEIPELPRYDL-EVVHINADEENEWQYPDSELEKLRDPS------IKALFLVNPSNP  253 (527)
T ss_pred             -----CCCCC-EEEEeCCChHHHHHHHHHcCCCe-EEEEeecCcccCCCCCHHHHHhhcCCC------CCEEEEeCCcCC
Confidence                 01667 78888999999999988887643 555666543  4789999999877654      899999999999


Q ss_pred             cccccC---hHHHHHHHHH--cCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCch
Q psy12303        237 LGAFDP---IEEIADICQK--YNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDG  310 (480)
Q Consensus       237 ~G~~~~---l~~I~~i~~~--~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~  310 (480)
                      ||.+.+   +++|+++|++  +++|+++|++|+.+..   .+.. .......--+++.|++|.++.| ..+|+++..+..
T Consensus       254 TG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~s-~~~~~~~~~I~v~SfSK~f~mtG~RlG~i~~~~~~  329 (527)
T PRK09275        254 PSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD---DFRS-LFAVLPYNTILVYSFSKYFGATGWRLGVIALHEDN  329 (527)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc---cccC-HHHhCCCCEEEEeehhhhccCcHhHHhhhhcCchh
Confidence            999977   7888888965  4999999999987542   1111 1111112246667899999744 778998876542


Q ss_pred             hhHhhhcCC---------ccc--ccccccc--cCcc-----cCCCC-ccccCCCCCC-chHHHHHHHHh--cHHHHHHHH
Q psy12303        311 LLISCNQMS---------AEY--LFMQDKL--YDVR-----YDTGD-KVIQCGRHND-IFKLWLQWRAK--GDEGFEKQI  368 (480)
Q Consensus       311 ~~~~~~~~~---------~~~--l~~~~~~--~~~~-----~~~~~-~~~~~~r~~~-~l~~~~~l~~~--g~~~~~~~~  368 (480)
                      .........         ..|  +......  .-.+     ..... .+...+.... +++++.....+  +.+..+++.
T Consensus       330 v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~~~~~~~~~~  409 (527)
T PRK09275        330 VFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLDEEDAYKKAMK  409 (527)
T ss_pred             HHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            221111000         000  0000000  0000     00000 0000000000 11111111112  344556666


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhh--hhhHHHHHHHHhcccEEEeeeeeC
Q psy12303        369 DRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILG--EITPILKGRMMQAGTMMVGYQPLN  446 (480)
Q Consensus       369 ~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~--~~~~~i~~~l~~~g~~~~~~~~~~  446 (480)
                      +..++..+.+.+.|..   ++.. .+|..+.++|.-.+.........++...+.  .-..++..+|.++..+++.++...
T Consensus       410 ~~~~~Rr~~l~~~Lg~---~~~~-~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v~PG~~F  485 (527)
T PRK09275        410 DIIRRRYKALYEGLGL---PEPE-DPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVLLPGGGF  485 (527)
T ss_pred             HHHHHHHHHHHHHcCC---CCcC-CCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEEeCchhh
Confidence            7777777777666622   2221 357777777754332100000001111110  012456666666544554444333


Q ss_pred             C-cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        447 D-LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       447 ~-~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      + ..+++|+|+.+  .+++++....++|++++++
T Consensus       486 g~~~~~vRis~a~--~~~~~~~~~~~rl~~~l~~  517 (527)
T PRK09275        486 GGPEWSVRVSLAN--LNEEDYAKIGKAIRKLLDE  517 (527)
T ss_pred             CCCCCeEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence            3 25689999644  4789999999999987753

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.82  E-value=1.4e-17  Score=162.83  Aligned_cols=291  Identities=10%  Similarity=-0.007  Sum_probs=184.6

Q ss_pred             chhcChhhHHHHHHHHHHHHHHhC---CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCch
Q psy12303        103 TYEIAPVFILMETVVLEKMRQIIG---WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHY  179 (480)
Q Consensus       103 ~~~~~~~~~~~e~~~~~~la~~~g---~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~  179 (480)
                      .|....+..++.+++.+++.+..|   ++++++++|+|+++++..++.++.-.             ||+ .|+++.++|+
T Consensus        51 ~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~-------------~gd-~Vl~~~p~y~  116 (357)
T TIGR03539        51 GYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGLG-------------PGD-TVVIPELAYP  116 (357)
T ss_pred             CCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHcCC-------------CCC-EEEECCCCcH
Confidence            344445567888888899888765   45689999999999988776654211             556 7889999999


Q ss_pred             hHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCcE
Q psy12303        180 SVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMW  256 (480)
Q Consensus       180 s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~  256 (480)
                      ++...+..+|.   +++.++       +++.++.   +      ++++|++++++||||.+.+   +++|.++|++||++
T Consensus       117 ~~~~~~~~~g~---~~~~v~-------~~~~l~~---~------~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~  177 (357)
T TIGR03539       117 TYEVGALLAGA---TPVAAD-------DPTELDP---V------GPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAV  177 (357)
T ss_pred             HHHHHHHhcCC---EEeccC-------ChhhcCc---c------CccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeE
Confidence            99988888887   555543       2333321   1      3789999999999999876   66788999999999


Q ss_pred             EEeeccccccccccccccCcccC-----CCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCccccccccccc
Q psy12303        257 LHVDAAWGGGLLLSKKYRHPRLT-----GIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLY  330 (480)
Q Consensus       257 l~vD~a~~~~~~~~~~~~~~~~~-----~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  330 (480)
                      +++|++|+......+...  .+.     +...-.+++.|++|.++.| ..+|+++ .++...............      
T Consensus       178 ii~De~y~~~~~~~~~~~--~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i-~~~~~~~~~~~~~~~~~~------  248 (357)
T TIGR03539       178 VASDECYLELGWEGRPVS--ILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVA-GDPALVAELLTVRKHAGL------  248 (357)
T ss_pred             EEEecchhhhccCCCCcc--ceecccCCCccccEEEEeccccccCCCceeEEEEe-cCHHHHHHHHHHHhhccc------
Confidence            999999976443111100  111     0011236677999997544 5678877 445544433211100000      


Q ss_pred             CcccCCCCccccCCCCCCchHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCcc
Q psy12303        331 DVRYDTGDKVIQCGRHNDIFKLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRV  409 (480)
Q Consensus       331 ~~~~~~~~~~~~~~r~~~~l~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~  409 (480)
                                     ....+...++...+ ....++...++..+.++++.+.|.+  .|+.+ .+|..+.+++...+.. 
T Consensus       249 ---------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~--~g~~~-~~p~~~~~~~~~~~~~-  309 (357)
T TIGR03539       249 ---------------MVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEK--AGFRI-DHSEAGLYLWATRGED-  309 (357)
T ss_pred             ---------------CCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH--cCCCC-cCCCccEEEEEECCCC-
Confidence                           01122222233333 2344566667777888899999988  47775 4566666665432211 


Q ss_pred             CCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCC--cccEEEEecccCCCCHHHHHHHHHHH
Q psy12303        410 RNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLND--LPNFFRNIISSAAVTEGDIDFLLTEM  473 (480)
Q Consensus       410 ~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~--~~~~~R~~~~~~~~t~~di~~~~~~l  473 (480)
                                     ..++.+.|.+.|+.+... ...+  ..+++|+++.+   +++++++.++.|
T Consensus       310 ---------------~~~~~~~l~~~gV~v~pg-~~f~~~~~~~iRis~~~---~~~~i~~~~~~l  356 (357)
T TIGR03539       310 ---------------AWDTVDRLAELGILVAPG-DFYGPAGSQHVRVALTA---TDERIAAAVARL  356 (357)
T ss_pred             ---------------HHHHHHHHHhCCEEECCc-cccCCCCCCeEEEEecC---CHHHHHHHHHhh
Confidence                           134567777888554433 2222  14799999543   689999988876

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.82  E-value=4.2e-18  Score=157.30  Aligned_cols=313  Identities=18%  Similarity=0.173  Sum_probs=211.8

Q ss_pred             chhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCC---ch
Q psy12303        103 TYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQC---HY  179 (480)
Q Consensus       103 ~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~---h~  179 (480)
                      .|.......++|..+.+...++||++..++.- .||+.||+.++.++.+              ||| .|+..+..   |-
T Consensus        63 yYgGce~VD~vE~laierak~LFga~~anVQP-hSGs~AN~av~~All~--------------pGD-timgm~l~~GGHl  126 (413)
T COG0112          63 YYGGCEYVDEVEELAIERAKKLFGAEYANVQP-HSGSQANQAVYLALLQ--------------PGD-TIMGLDLSHGGHL  126 (413)
T ss_pred             ccCCCeeHHHHHHHHHHHHHHHhCCCccccCC-CCchHHHHHHHHHHcC--------------CCC-eEecccCCCCCcc
Confidence            45566777899999999999999998766444 4578899999988876              666 66655544   44


Q ss_pred             hHHHHHHHcCCCCCCeEEeeCC-CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEE
Q psy12303        180 SVRSCAAVCGLGTDNCVEVPSD-KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLH  258 (480)
Q Consensus       180 s~~~~~~~~g~~~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~  258 (480)
                      ++.......|.- -+++..++| +++.+|.|++++.+++.+     |++|++  |.+..-..-|++++.+||++.|++|.
T Consensus       127 tHg~~v~~sG~~-~~~v~Y~vd~et~~IDyD~~~k~a~e~k-----PK~ii~--G~SaY~r~id~~~~reIad~VGA~L~  198 (413)
T COG0112         127 THGSPVNFSGKL-FNVVSYGVDPETGLIDYDEVEKLAKEVK-----PKLIIA--GGSAYSRPIDFKRFREIADEVGAYLM  198 (413)
T ss_pred             cCCCCCCcccee-EEeEecccccccCccCHHHHHHHHHHhC-----CCEEEE--CccccccccCHHHHHHHHHHhCceEE
Confidence            444344444532 256677788 469999999999998864     898887  66677777899999999999999999


Q ss_pred             eeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCC
Q psy12303        259 VDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGD  338 (480)
Q Consensus       259 vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  338 (480)
                      +|.||-.|.+....+..    .++.+|+++.+.||++.+|.| |++++++.++.........+.+               
T Consensus       199 ~DmAHiaGLVA~G~~p~----P~~~AdvVTtTTHKTlrGPrG-G~Il~~~eel~kkin~aVFPg~---------------  258 (413)
T COG0112         199 VDMAHVAGLIAGGVHPN----PLPHADVVTTTTHKTLRGPRG-GIILTNDEELAKKINSAVFPGL---------------  258 (413)
T ss_pred             ehHHHHHHHHhcccCCC----CCCccceEeCCcccCCCCCCc-eEEEeccHHHHHHhhhhcCCcc---------------
Confidence            99999988876666544    233799999999999998764 7777777666555443222211               


Q ss_pred             ccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC-ceeEEEEEeecCccCCCchhh
Q psy12303        339 KVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP-EMVNVSFWYLPTRVRNMPHEK  416 (480)
Q Consensus       339 ~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~-~~~~v~f~~~~~~~~~~~~~~  416 (480)
                         +++-.. ...+...+++..-..+++++.++..++++.|.+.|.+  .|+++++.- +...+.....+..+.+     
T Consensus       259 ---qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~--~G~~vvsGgTdnHl~lVDl~~~~~~G-----  328 (413)
T COG0112         259 ---QGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKE--RGFKVVSGGTDNHLVLVDLRSKGLTG-----  328 (413)
T ss_pred             ---CCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHH--cCCeEecCCccceEEEEEcccCCCCH-----
Confidence               111111 1223334454444667889999999999999999999  799998643 3344444333222221     


Q ss_pred             HHHHhhhhhHHHHHHHHhcccEEEeee--eeC----CcccEEEEec---ccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        417 RLNILGEITPILKGRMMQAGTMMVGYQ--PLN----DLPNFFRNII---SSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       417 ~~~~l~~~~~~i~~~l~~~g~~~~~~~--~~~----~~~~~~R~~~---~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                               ++....|.+-|+. +...  +++    -.+..+|+..   ......++|++++.+.|.+++..
T Consensus       329 ---------k~ae~~L~~~~It-~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~  390 (413)
T COG0112         329 ---------KKAEAALERAGIT-VNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG  390 (413)
T ss_pred             ---------HHHHHHHHHcCEe-eccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence                     2233334344432 2111  111    1146789873   23455678999999988887653

>PRK07505 hypothetical protein; Provisional

Probab=99.82  E-value=1.1e-17  Score=166.32  Aligned_cols=302  Identities=12%  Similarity=0.111  Sum_probs=178.2

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        110 FILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      ..+...++++.+++++|.   ..+++++|++|+..++..++....+    .|    . ..+|+.....|+++........
T Consensus        89 ~~~~~~~l~~~la~~~~~---~~~~~~sG~~a~~~ai~~~~~~~~~----~~----~-~~vi~~~~~~H~s~~~~~~~~~  156 (402)
T PRK07505         89 RSQILKDLEEALSELFGA---SVLTFTSCSAAHLGILPLLASGHLT----GG----V-PPHMVFDKNAHASLNILKGICA  156 (402)
T ss_pred             hhHHHHHHHHHHHHHhCC---CEEEECChHHHHHHHHHHHHhcccC----CC----C-CCEEEEchhhhHhHHhhhhhhh
Confidence            355667788899999987   3676678889999999876542110    01    1 2266777788998754333222


Q ss_pred             CCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccc-
Q psy12303        190 LGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLL-  268 (480)
Q Consensus       190 ~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~-  268 (480)
                      .+ .+++.+|.+     |+++|++++++.      +.+++++.|++++|.+.|+++|.++|++||+++++|++|+.+.+ 
T Consensus       157 ~~-~~v~~~~~~-----d~~~l~~~~~~~------~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g  224 (402)
T PRK07505        157 DE-TEVETIDHN-----DLDALEDICKTN------KTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYG  224 (402)
T ss_pred             cC-CeEEEeCCC-----CHHHHHHHHhcC------CCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcC
Confidence            12 267778764     899999988654      67888889999999999999999999999999999999864321 


Q ss_pred             -ccccccCcccCC--CCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCC
Q psy12303        269 -LSKKYRHPRLTG--IERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGR  345 (480)
Q Consensus       269 -~~~~~~~~~~~~--~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r  345 (480)
                       ....+.. ...+  ..+..+++.++.|.++++  .|++++.+++..........+|.+..                 +.
T Consensus       225 ~~g~~~~~-~~~~~~~~d~~i~~~s~sK~~~~~--Gg~~~~~~~~~~~~~~~~~~~~t~~~-----------------~~  284 (402)
T PRK07505        225 KNGEGYVR-SELDYRLNERTIIAASLGKAFGAS--GGVIMLGDAEQIELILRYAGPLAFSQ-----------------SL  284 (402)
T ss_pred             CCCCchHH-HHcCCCCCCCeEEEEechhhhhcc--CeEEEeCCHHHHHHHHHhCCCceeCC-----------------CC
Confidence             1111111 1112  123345666899998864  35655555555544332222222111                 10


Q ss_pred             C-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhh
Q psy12303        346 H-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEI  424 (480)
Q Consensus       346 ~-~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~  424 (480)
                      . ....++..++..+..+.+.+..++..+..+.+.+.+..  +    .......+..+. .+..              ..
T Consensus       285 ~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~----~~g~~~~i~~~~-~~~~--------------~~  343 (402)
T PRK07505        285 NVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPT--E----QSGSFLPIRLIY-IGDE--------------DT  343 (402)
T ss_pred             CHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHh--c----CCCCCCCEEEEE-eCCH--------------HH
Confidence            0 12222333343333444444444444444444333322  1    011111111111 1100              01


Q ss_pred             hHHHHHHHHhcccEEEeeeeeCC---cccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        425 TPILKGRMMQAGTMMVGYQPLND---LPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       425 ~~~i~~~l~~~g~~~~~~~~~~~---~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      ..++.++|.++|+++... ....   ..+++|++ ++..+|++|++++++.|+++++
T Consensus       344 ~~~~~~~l~~~Gi~v~~~-~~p~~~~~~~~lRi~-~~~~~t~eei~~~~~~l~~~l~  398 (402)
T PRK07505        344 AIKAAKQLLDRGFYTSPV-FFPVVAKGRAGLRIM-FRASHTNDEIKRLCSLLKEILD  398 (402)
T ss_pred             HHHHHHHHHHCCCeEeee-cCCCCCCCCceEEEe-cCccCCHHHHHHHHHHHHHHHH
Confidence            246778888898665432 2111   13699999 8888999999999999998765

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.82  E-value=3.1e-18  Score=167.06  Aligned_cols=217  Identities=15%  Similarity=0.129  Sum_probs=148.3

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA  185 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~  185 (480)
                      ..|....+|+.    ++++.  . .+.+++++|++|+..++.+...              ||+ +|+++...|+.....+
T Consensus        49 ~~p~~~~Le~~----lA~l~--~-~~~v~~~sG~~Ai~~~l~all~--------------~Gd-~Vl~~~~~y~~~~~~~  106 (366)
T PRK07582         49 SNPTWRALEAA----LGELE--G-AEALVFPSGMAAITAVLRALLR--------------PGD-TVVVPADGYYQVRALA  106 (366)
T ss_pred             CCccHHHHHHH----HHHHc--C-CCEEEECCHHHHHHHHHHHhcC--------------CCC-EEEEeCCCcHhHHHHH
Confidence            34455555555    66666  2 3577888888998888866543              556 7777777877766544


Q ss_pred             H----HcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeec
Q psy12303        186 A----VCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDA  261 (480)
Q Consensus       186 ~----~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~  261 (480)
                      .    ..|+   +++.++.++++       + .+.+      .+++|++++++|++|.+.|+++|.++|+++|++++||+
T Consensus       107 ~~~l~~~G~---~v~~v~~~~~~-------~-~~~~------~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~  169 (366)
T PRK07582        107 REYLAPLGV---TVREAPTAGMA-------E-AALA------GADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDN  169 (366)
T ss_pred             HHHHhcCeE---EEEEECCCChH-------H-Hhcc------CceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEEC
Confidence            3    3455   78888875321       1 1222      28899999999999999999999999999999999999


Q ss_pred             cccccccccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCc
Q psy12303        262 AWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDK  339 (480)
Q Consensus       262 a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  339 (480)
                      +|+.+.... ...+       ++|+++.|+|||++++.+  .|+++.++++......... .+.                
T Consensus       170 t~~~~~~~~-p~~~-------g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~-~~~----------------  224 (366)
T PRK07582        170 TTATPLGQR-PLEL-------GADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWR-LLA----------------  224 (366)
T ss_pred             CCCCccccC-chhc-------CCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHH-HHh----------------
Confidence            986432111 1123       789999999999988766  4777766655444322110 010                


Q ss_pred             cccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        340 VIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       340 ~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                          +-....+.+|..++.+  +.+..++++..+++..+.+.|++ +|.++-+.
T Consensus       225 ----g~~~~~~~a~l~~r~l--~tl~~R~~~~~~na~~la~~L~~-~p~v~~v~  271 (366)
T PRK07582        225 ----GAIPGPFEAWLAHRSL--GTLGLRFARQCANALAVAELLAG-HPAVRGVR  271 (366)
T ss_pred             ----CCCCCHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHHHh-CCCccEEE
Confidence                1112355667666554  45778889999999999999999 88876543

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.82  E-value=7.7e-18  Score=166.51  Aligned_cols=234  Identities=15%  Similarity=0.108  Sum_probs=158.8

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH----cCCC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV----CGLG  191 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~----~g~~  191 (480)
                      ++.+.++++.|.+.  .+++++|+.|+..++.++..              ||+ .|+++...|......+..    .|+ 
T Consensus        73 ~Le~~lA~l~g~~~--av~~sSG~aAi~~al~all~--------------~Gd-~Vv~~~~~y~~t~~~~~~~l~~~Gi-  134 (436)
T PRK07812         73 VVEQRIAALEGGVA--ALLLASGQAAETFAILNLAG--------------AGD-HIVSSPRLYGGTYNLFHYTLPKLGI-  134 (436)
T ss_pred             HHHHHHHHHhCCCe--EEEEccHHHHHHHHHHHHhC--------------CCC-EEEEeCCcchHHHHHHHHHhhcCeE-
Confidence            34455889899876  79999999999999877653              556 677777777776554332    344 


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                        +++.++ +.   .|+++++++++++      +++|++++++|++|.+.|+++|.++|+++|++++||++++.+....+
T Consensus       135 --~v~~vd-d~---~d~e~l~~ai~~~------tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~p  202 (436)
T PRK07812        135 --EVSFVE-DP---DDLDAWRAAVRPN------TKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRP  202 (436)
T ss_pred             --EEEEEC-CC---CCHHHHHHhCCCC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCc
Confidence              666664 22   2899999888765      89999999999999999999999999999999999999987655332


Q ss_pred             cccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCcccccccccccCc--ccCC---------C-C
Q psy12303        272 KYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDV--RYDT---------G-D  338 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~---------~-~  338 (480)
                       ..+       ++|+++.|+||+++++. ..|++++.+...-... .... .+...+..+..  ....         . .
T Consensus       203 -l~~-------GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (436)
T PRK07812        203 -LEH-------GADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQ-GRFP-GFTTPDPSYHGVVFAELGPPAYALKARVQ  272 (436)
T ss_pred             -hhc-------CCCEEEEecccccCCCCCeEEEEEEcCCcccccc-cccc-ccccCCcccccchhhhcchhHHHHHHHHH
Confidence             234       89999999999998653 2566666443211000 0000 00000000000  0000         0 0


Q ss_pred             ccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        339 KVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       339 ~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      +....|.......+|+.++  |.+.+..++++..+++..+.+.|++ +|+++-+
T Consensus       273 ~~~~~G~~l~p~~a~l~~r--gl~tL~~R~~~~~~nA~~la~~L~~-~p~v~~V  323 (436)
T PRK07812        273 LLRDLGSAISPFNAFLIAQ--GLETLSLRIERHVANAQRVAEFLEA-RDEVASV  323 (436)
T ss_pred             HHHhcCCCCCHHHHHHHhc--CcCcHHHHHHHHHHHHHHHHHHHHh-CCCccEE
Confidence            0111233456667776654  4678899999999999999999999 8987543

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.82  E-value=2.4e-17  Score=163.81  Aligned_cols=324  Identities=16%  Similarity=0.113  Sum_probs=196.6

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCe
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNC  195 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v  195 (480)
                      ++++.+++++|.+.  +++++|||+|+..++.++...+..   ..+.  .||+ .|+++..+|+++..++...|.   ++
T Consensus        67 ~fe~~lA~~~g~~~--~v~~~sGt~al~~aL~al~~~~~~---~~~~--~pGd-~VIv~~~t~~a~~~~v~~~G~---~p  135 (438)
T PRK15407         67 AFEKKLAEFLGVRY--ALLVNSGSSANLLAFSALTSPKLG---DRAL--KPGD-EVITVAAGFPTTVNPIIQNGL---VP  135 (438)
T ss_pred             HHHHHHHHHhCCCe--EEEECCHHHHHHHHHHHHhhcccc---ccCC--CCCC-EEEECCCCcHHHHHHHHHcCC---EE
Confidence            34455888888864  899999999999999877432110   0111  2556 889999999999999999888   77


Q ss_pred             EEeeCC-CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccccccc
Q psy12303        196 VEVPSD-KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYR  274 (480)
Q Consensus       196 ~~v~~~-~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~  274 (480)
                      +.++++ .++.+|+++++++++++      +++|++++.   .|...++++|.++|++||+++++|+||+.|....... 
T Consensus       136 v~vdvd~~~~~id~~~le~~i~~~------tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~-  205 (438)
T PRK15407        136 VFVDVELPTYNIDASLLEAAVSPK------TKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRM-  205 (438)
T ss_pred             EEEecCCCcCCcCHHHHHHHcCcC------CeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCee-
Confidence            888887 46889999999998765      889988774   6888899999999999999999999999887654321 


Q ss_pred             CcccCCCCCCccceeCcc--ccCCCcccceEEEEeCchhhHhhhcCCcccccc-------c-------ccc-cCcccCCC
Q psy12303        275 HPRLTGIERADSVTWNPH--KLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFM-------Q-------DKL-YDVRYDTG  337 (480)
Q Consensus       275 ~~~~~~~~~~D~~~~s~h--K~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~-------~-------~~~-~~~~~~~~  337 (480)
                         . |. ..|..++|+|  |.+.++. .|+++++++++...+.... .+-..       .       ... ....+.+.
T Consensus       206 ---~-G~-~gd~~~fSf~~~k~~~~ge-GG~l~t~d~~l~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (438)
T PRK15407        206 ---T-GT-FGDIATLSFYPAHHITMGE-GGAVFTNDPLLKKIIESFR-DWGRDCWCAPGCDNTCGKRFGWQLGELPFGYD  278 (438)
T ss_pred             ---e-ec-cCceEEEeCCCCCCccccC-ceEEEECCHHHHHHHHHHH-HhCccccccccccccccccccccccccccccc
Confidence               1 11 2366566554  6565433 4888888876554332111 00000       0       000 00000000


Q ss_pred             C-c-cccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCe-EEecCC-ceeEEEEEeecCccCCCc
Q psy12303        338 D-K-VIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKF-YLILEP-EMVNVSFWYLPTRVRNMP  413 (480)
Q Consensus       338 ~-~-~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~-~~~~~~-~~~~v~f~~~~~~~~~~~  413 (480)
                      . + ....|.++..-.+.+++.....+.+++++++.+++++++.+.|.. +++. .+...+ ......+.| +-.+....
T Consensus       279 ~~~~~~~~G~n~rmsel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~-~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~  356 (438)
T PRK15407        279 HKYTYSHLGYNLKITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLAS-LEDFLILPEATPNSDPSWFGF-PITVKEDA  356 (438)
T ss_pred             ccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCccccCcCCCCCeeEEEEE-EEEECCcC
Confidence            0 0 001232233333344443334678899999999999999999998 7753 332212 222211111 11111000


Q ss_pred             hhhHHHHhhhhhHHHHHHHHhcccEEEe-ee-ee-------------CC--------cccEEEEecccCCCCHHHHHHHH
Q psy12303        414 HEKRLNILGEITPILKGRMMQAGTMMVG-YQ-PL-------------ND--------LPNFFRNIISSAAVTEGDIDFLL  470 (480)
Q Consensus       414 ~~~~~~~l~~~~~~i~~~l~~~g~~~~~-~~-~~-------------~~--------~~~~~R~~~~~~~~t~~di~~~~  470 (480)
                      .      ..  ..++.+.|.++|+-... +. +.             .+        ....+-+. +++..|++|+++++
T Consensus       357 ~------~~--Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP-~~~~l~~~~v~~i~  427 (438)
T PRK15407        357 G------FT--RVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIG-VYPGLTEEMLDYVI  427 (438)
T ss_pred             C------CC--HHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEec-CCCCCCHHHHHHHH
Confidence            0      00  13566777777753110 00 00             00        01234455 57778999999999


Q ss_pred             HHHHHhhc
Q psy12303        471 TEMDRLGH  478 (480)
Q Consensus       471 ~~l~~~~~  478 (480)
                      ++|+++++
T Consensus       428 ~~i~~~~~  435 (438)
T PRK15407        428 EKIEEFFG  435 (438)
T ss_pred             HHHHHHHh
Confidence            99998764

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.81  E-value=9e-19  Score=171.46  Aligned_cols=213  Identities=15%  Similarity=0.121  Sum_probs=156.1

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH----HHHcC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC----AAVCG  189 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~----~~~~g  189 (480)
                      .+++.+.+++++|.+  .++++++|+.|+..++. ...              ||+ +|+++...|.++...    +...|
T Consensus        49 ~~~le~~la~l~g~~--~~l~~~sG~~al~~~l~-ll~--------------~Gd-~Vl~~~~~y~~~~~~~~~~~~~~G  110 (378)
T TIGR01329        49 RTALESLLAKLDKAD--RAFAFSSGMAALDVITR-LLN--------------NGD-EIIAGDDLYGGTDRLLTQVVPRSG  110 (378)
T ss_pred             HHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHH-HhC--------------CCC-EEEEcCCCchHHHHHHHHHHHHcC
Confidence            345667799999985  47778888888766554 322              556 788888888876654    34456


Q ss_pred             CCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccc
Q psy12303        190 LGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLL  269 (480)
Q Consensus       190 ~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~  269 (480)
                      +   +++.++.+     |+++++++++++      +++|++++++|++|.+.|+++|+++|+++|++++||++++.+...
T Consensus       111 ~---~v~~vd~~-----d~~~le~~i~~~------tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~  176 (378)
T TIGR01329       111 V---VVVHVDTT-----DLDKVKAALGPK------TKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLC  176 (378)
T ss_pred             c---EEEEeCCC-----CHHHHHHhcCcC------ceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccC
Confidence            6   78888764     899999998754      899999999999999999999999999999999999999766442


Q ss_pred             cccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC
Q psy12303        270 SKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN  347 (480)
Q Consensus       270 ~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~  347 (480)
                      .+. .+       ++|+++.|+||++++|.+  .|+++++++...+.....    ...                 .|...
T Consensus       177 ~~l-~~-------g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~----~~~-----------------~G~~~  227 (378)
T TIGR01329       177 NPL-EL-------GADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFL----QNS-----------------TGSGL  227 (378)
T ss_pred             Chh-hc-------CCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHH----HHh-----------------cCCcC
Confidence            222 33       789999999999998766  788887776543332211    000                 11112


Q ss_pred             CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeE
Q psy12303        348 DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFY  390 (480)
Q Consensus       348 ~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~  390 (480)
                      ....+|..++  +.+.+..++++..+++..+.+.|++ +|.+.
T Consensus       228 ~~~~a~l~~~--~l~tl~~R~e~~~~na~~la~~L~~-~~~v~  267 (378)
T TIGR01329       228 APFDCWLLLR--GIKTLAIRIEKQQENARAIAMFLST-HPRVK  267 (378)
T ss_pred             CHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHh-CCCcc
Confidence            3445555443  4567888899999999999999998 77763

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.81  E-value=5e-17  Score=161.49  Aligned_cols=306  Identities=15%  Similarity=0.105  Sum_probs=189.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCC-chhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQC-HYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~-h~s~~~~~~~~g  189 (480)
                      .....++.+.+++++|.+  .+.++++|++||..|+..++....   +.+|..  +|+.+|+..... |.+...++...+
T Consensus        78 ~~~~~~l~~~l~~~~~~~--~~~~~~SGs~A~e~ai~~a~~~~~---~~~~~~--~~~~~i~~~~~~yhg~~~~~~~~~~  150 (401)
T TIGR01885        78 NDVFGEFAEYVTKLFGYD--KVLPMNTGAEAVETAIKLARKWGY---KVKGIP--ENQAIIVSAKGNFHGRTLGAISMST  150 (401)
T ss_pred             CHHHHHHHHHHHhhcCCC--EEEEeCccHHHHHHHHHHHHHHhh---hhcCCC--CCCCEEEEECCCcCcccHHHHhCcC
Confidence            344556677788888864  589999999999999999987421   111211  224466666655 656566665543


Q ss_pred             C-------C--CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcE
Q psy12303        190 L-------G--TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMW  256 (480)
Q Consensus       190 ~-------~--~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~  256 (480)
                      .       +  ...+..+|.+     |+++|++++++.   +..+.+|+++..++++|.+.|    +++|.++|++||++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~l  222 (401)
T TIGR01885       151 DPDSRTNFGPYVPGFKKIPYN-----NLEALEEALEDH---GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVL  222 (401)
T ss_pred             CcccccccCCCCCCceEeCCC-----CHHHHHHHHHhc---CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence            1       1  0133444443     789999988643   234788999999999999987    99999999999999


Q ss_pred             EEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccC
Q psy12303        257 LHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYD  335 (480)
Q Consensus       257 l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  335 (480)
                      +++|++|.+.......... ...++ ..|+++++  |.++++ .++|+++.+ +++......   .....          
T Consensus       223 li~DEv~~g~g~~G~~~~~-~~~~~-~~di~~~g--K~l~~g~~~ig~v~~~-~~i~~~~~~---~~~~~----------  284 (401)
T TIGR01885       223 LIADEIQTGLGRTGKLLCV-DHENV-KPDIVLLG--KALSGGVYPVSAVLAD-DDVMLTIKP---GEHGS----------  284 (401)
T ss_pred             EEEechhhCCCccchhhHH-hhcCC-CCCEEEee--ccccCCCCCcEEEEEc-HHHHhhccC---CCCCC----------
Confidence            9999999764322211111 12233 57888754  998865 467877754 444433211   00000          


Q ss_pred             CCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec--CCceeEEEEEeecCccCCCc
Q psy12303        336 TGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMP  413 (480)
Q Consensus       336 ~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~--~~~~~~v~f~~~~~~~~~~~  413 (480)
                          ++ ++.+.....+.++|+.+..+   .+.++..++++++.+.|++ +. ..++.  .+...++.+.+.+.. .+  
T Consensus       285 ----t~-~~~p~~~~aa~a~L~~i~~~---~l~~~~~~~~~~~~~~L~~-l~-~~~~~~~~g~g~~~~i~~~~~~-~~--  351 (401)
T TIGR01885       285 ----TY-GGNPLACAVAVAALEVLEEE---KLAENAEKLGEIFRDQLKK-LP-KPIITEVRGRGLLNAIVIDESK-TG--  351 (401)
T ss_pred             ----CC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHh-cc-CCceeEEeecCeeEEEEeccCc-ch--
Confidence                00 11122333444455544332   3446778889999999998 53 22222  223333333222111 00  


Q ss_pred             hhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        414 HEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       414 ~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                             .  ...++.+.|.++|++ +.+.   + .+.+|++ ++..+|++||++++++|++.+
T Consensus       352 -------~--~~~~l~~~l~~~Gv~-v~~~---~-~~~lRi~-p~l~~t~~~i~~~l~~l~~~l  400 (401)
T TIGR01885       352 -------R--TAWDLCLKLKEKGLL-AKPT---H-GNIIRLA-PPLVITEEQLDEGLEIIKKVI  400 (401)
T ss_pred             -------h--HHHHHHHHHHhCCEE-EEec---C-CCEEEEe-CCccCCHHHHHHHHHHHHHHh
Confidence                   0  124677888888854 3331   2 4689999 888999999999999998865

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.81  E-value=1.7e-18  Score=170.77  Aligned_cols=215  Identities=13%  Similarity=0.110  Sum_probs=155.8

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH----HHHHHcCCC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR----SCAAVCGLG  191 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~----~~~~~~g~~  191 (480)
                      ++.+.++++.|.+.  .+++++|+.|+..++.+...              ||+ .|+++...|....    ..+...|+ 
T Consensus        69 ~le~~lA~l~g~~~--~i~~~sG~~Al~~~l~~ll~--------------~Gd-~Viv~~~~y~~t~~~~~~~~~~~G~-  130 (403)
T PRK07503         69 LLEQRMASLEGGEA--AVALASGMGAITATLWTLLR--------------PGD-EVIVDQTLYGCTFAFLHHGLGEFGV-  130 (403)
T ss_pred             HHHHHHHHHhCCCc--EEEEcCHHHHHHHHHHHHcC--------------CCC-EEEEccCccchHHHHHHHHHhhCCE-
Confidence            34455899999865  67888999998888876532              556 6777777775433    33445566 


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                        +++.++.+     |+++++++++++      |++|++++++|++|.+.|+++|.++|+++|+++++|++|+.+....+
T Consensus       131 --~v~~vd~~-----d~~~l~~~i~~~------tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~~  197 (403)
T PRK07503        131 --TVRHVDLT-----DPAALKAAISDK------TRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRP  197 (403)
T ss_pred             --EEEEeCCC-----CHHHHHHhcCcc------CcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCc
Confidence              77777764     789999998765      88999999999999999999999999999999999999987643211


Q ss_pred             cccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCc
Q psy12303        272 KYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI  349 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~  349 (480)
                       ...       ++|+++.|++|+++++.+  .|+++ .+++.............                   .+.....
T Consensus       198 -l~~-------g~Di~v~S~tK~l~g~gd~~gG~v~-~~~~l~~~l~~~~~~~~-------------------~g~~~s~  249 (403)
T PRK07503        198 -LEL-------GADLVVHSATKYLGGHGDITAGLVV-GGKALADRIRLEGLKDM-------------------TGAVMSP  249 (403)
T ss_pred             -hhh-------CCCEEEccccccccCCCceeEEEEE-cCHHHHHHHHhhhHHhC-------------------cCCCCCH
Confidence             123       789999999999997543  56555 66655443321100000                   1222455


Q ss_pred             hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        350 FKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       350 l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      +.+|+.++.  .+.+..++++..+++..+.+.|++ +|.++.+
T Consensus       250 ~~a~l~l~~--L~tl~~r~~~~~~na~~~a~~L~~-~p~v~~V  289 (403)
T PRK07503        250 FDAFLLMRG--LKTLALRMDRHCASAQAVAEWLAR-HPAVELV  289 (403)
T ss_pred             HHHHHHHcC--cchHHHHHHHHHHHHHHHHHHHHh-CCCccEE
Confidence            666766654  567788888999999999999999 8887644

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.81  E-value=1.9e-19  Score=173.37  Aligned_cols=233  Identities=26%  Similarity=0.323  Sum_probs=158.3

Q ss_pred             HHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCC
Q psy12303        113 METVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGT  192 (480)
Q Consensus       113 ~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~  192 (480)
                      .-.+..+.+|+.||++. .-++++|+|.+|..++.++..              ||+ .|+++..+|-|+..++.+.|+  
T Consensus        67 ~I~eAe~~aA~~fGAd~-t~flvnGsT~g~~a~i~a~~~--------------~gd-~VLv~RN~HkSv~~alil~ga--  128 (417)
T PF01276_consen   67 IIKEAEELAARAFGADK-TFFLVNGSTSGNQAMIMALCR--------------PGD-KVLVDRNCHKSVYNALILSGA--  128 (417)
T ss_dssp             HHHHHHHHHHHHHTESE-EEEESSHHHHHHHHHHHHHTT--------------TTC-EEEEETT--HHHHHHHHHHTE--
T ss_pred             HHHHHHHHHHHhcCCCe-EEEEecCchHHHHHHHHHhcC--------------CCC-EEEEcCCcHHHHHHHHHHcCC--
Confidence            34456678999999986 467788888999999888875              556 899999999999999999998  


Q ss_pred             CCeEEeeCC-CC----CCCCH-----HHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecc
Q psy12303        193 DNCVEVPSD-KR----GRLIP-----SELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAA  262 (480)
Q Consensus       193 ~~v~~v~~~-~~----~~~d~-----~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a  262 (480)
                       ..++++.. +.    +.+++     +.++++|++..... .+++|++++| |..|.+.|+++|+++|+++++.|+||+|
T Consensus       129 -~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k-~~~~vvlt~P-TY~Gv~~di~~I~~~~h~~~~~llvDEA  205 (417)
T PF01276_consen  129 -IPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAK-APRLVVLTSP-TYYGVCYDIKEIAEICHKHGIPLLVDEA  205 (417)
T ss_dssp             -EEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCH-CESEEEEESS--TTSEEE-HHHHHHHHCCTECEEEEE-T
T ss_pred             -eEEEecCCccccCCccCCChhhhhHHHHHHHHHhCcccc-CceEEEEeCC-CCCeEEECHHHHHHHhcccCCEEEEEcc
Confidence             66676553 22    24666     89999998753211 1556999999 6789999999999999999999999999


Q ss_pred             ccccccccccccCcccCCCCCCc-------cceeCccccCCCcccceEEEEeCch-hh-Hhh-------hcCCccccccc
Q psy12303        263 WGGGLLLSKKYRHPRLTGIERAD-------SVTWNPHKLMGTLLQCSTIHFKQDG-LL-ISC-------NQMSAEYLFMQ  326 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~D-------~~~~s~hK~~~~p~~~g~~~~~~~~-~~-~~~-------~~~~~~~l~~~  326 (480)
                      ||+...+.+..+. . ..+ ++|       +++.|.||.+.+-..++++.+++.. .- .+.       .+.+|.|+.- 
T Consensus       206 hGah~~F~~lp~~-a-~~~-gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lm-  281 (417)
T PF01276_consen  206 HGAHFGFHPLPRS-A-LAL-GADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLM-  281 (417)
T ss_dssp             T-TTGGCSGGGTT-C-SST-TSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHH-
T ss_pred             ccccccCCCCccc-h-hhc-cCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHH-
Confidence            9998776644322 1 122 788       9999999999998899999999875 21 111       1122222210 


Q ss_pred             ccccCcccCCCCccccCCCCCCchHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHH---hcCCCCeEEecCC
Q psy12303        327 DKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKI---KSMPDKFYLILEP  395 (480)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l---~~~~~g~~~~~~~  395 (480)
                                           +++..  +.+.+ +.+| +++.++..++++.+++.|   .+ +.+++++.+.
T Consensus       282 ---------------------ASlD~--a~~~m~~~~G-~~l~~~~i~~a~~~R~~i~~~~~-~~~~~~~~~~  329 (417)
T PF01276_consen  282 ---------------------ASLDV--ARAQMEEEEG-RELLEEAIELAEEFRKKINRLND-IWGFKVLGPE  329 (417)
T ss_dssp             ---------------------HHHHH--HHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHCC-T-SSEESS-S
T ss_pred             ---------------------HHHHH--HHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhcCC-CceEecCCcc
Confidence                                 11221  12223 2333 566777788888888888   56 7888887653

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.81  E-value=1.2e-17  Score=165.72  Aligned_cols=318  Identities=12%  Similarity=0.046  Sum_probs=202.8

Q ss_pred             HhHHHHHHHHcCc-CCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCe--EECCChhHHHHHHHHHHHHhcCchhHhcC
Q psy12303         87 SMAGEWLIATANT-NMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDS--ILAPGGSISNLYAFLAARHKMFPTYKEKG  161 (480)
Q Consensus        87 ~~~~~~l~~~~~~-~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~--~~t~ggt~a~~~al~~~~~~~~~~~~~~g  161 (480)
                      ..+.+.+...... ....|....+..++.+.+.+|+.+.-+.  +++++  ++|+|+++|+..++.+....         
T Consensus        47 ~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~---------  117 (396)
T PRK09257         47 RAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRA---------  117 (396)
T ss_pred             HHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHh---------
Confidence            3445666555432 3335766777788888888887665442  45565  89999999999988655320         


Q ss_pred             CCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeC-C-CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccc
Q psy12303        162 LSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPS-D-KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGA  239 (480)
Q Consensus       162 ~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~-~-~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~  239 (480)
                         .||+ .|++.+++++.+..+++.+|+   +++.+|. + +++.+|+++++++++..   ..+++++++++++||||.
T Consensus       118 ---~pGd-~Vlv~~P~y~~~~~~~~~~g~---~~v~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~~~i~~~p~NPTG~  187 (396)
T PRK09257        118 ---FPDA-KVWVSDPTWPNHRAIFEAAGL---EVKTYPYYDAATKGLDFDAMLADLSQA---PAGDVVLLHGCCHNPTGA  187 (396)
T ss_pred             ---CCCC-eEEECCCCcccHHHHHHHcCC---cEEEEeccccccCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCC
Confidence               1656 899999999999999999998   8889987 3 35789999999988742   122567788999999999


Q ss_pred             ccC---hHHHHHHHHHcCcEEEeecccccccccccc-ccC-cccCCCCCCccceeCccccCCC-cccceEEEE--eCchh
Q psy12303        240 FDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKK-YRH-PRLTGIERADSVTWNPHKLMGT-LLQCSTIHF--KQDGL  311 (480)
Q Consensus       240 ~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~-~~~-~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~--~~~~~  311 (480)
                      +.+   +++|+++|++|++++++|++|......... ... +.+.+...--+++.|++|.++. +..+|++++  .++..
T Consensus       188 ~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~~~~~~~~  267 (396)
T PRK09257        188 DLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVGALSVVAEDAEE  267 (396)
T ss_pred             CCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccceeEEEEeCCHHH
Confidence            966   688889999999999999999876531110 000 0111111113567799999996 688999874  33332


Q ss_pred             hH----hhhcC-CcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--c------HHHHHHHHHHHHHHHHHH
Q psy12303        312 LI----SCNQM-SAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--G------DEGFEKQIDRLMELAEYM  378 (480)
Q Consensus       312 ~~----~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g------~~~~~~~~~~~~~l~~~l  378 (480)
                      +.    ..... ...+..                      ...+...+....+  +      .+.+++..++..+.++.+
T Consensus       268 ~~~~~~~~~~~~~~~~~~----------------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l  325 (396)
T PRK09257        268 ADRVLSQLKATIRTNYSN----------------------PPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLL  325 (396)
T ss_pred             HHHHHHHHHHHhhhhcCC----------------------CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21    11110 011110                      0111111111111  1      234556777888889999


Q ss_pred             HHHHhcCCC---CeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEe
Q psy12303        379 VKKIKSMPD---KFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNI  455 (480)
Q Consensus       379 ~~~l~~~~~---g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~  455 (480)
                      .+.|++ ..   ++.+ ..|+.+.++|.-.+                  ...+.+.+.+.|+ .+.+      .+  |++
T Consensus       326 ~~~L~~-~~~~~~~~~-~~p~gg~~~w~~l~------------------~~~~~~l~~~~~V-~~~p------~~--ri~  376 (396)
T PRK09257        326 VEALKA-KGPSRDFDF-IARQRGMFSYSGLT------------------PEQVDRLREEFGV-YAVG------SG--RIN  376 (396)
T ss_pred             HHHHHh-cCCCCCccc-ccccceEEEecCCC------------------HHHHHHHHHcCCE-EEcC------CC--eEE
Confidence            999988 42   3554 46777777663211                  0122333445564 4333      12  988


Q ss_pred             cccCCCCHHHHHHHHHHHHHh
Q psy12303        456 ISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       456 ~~~~~~t~~di~~~~~~l~~~  476 (480)
                      +.+  .++++|++++++|+++
T Consensus       377 ~~~--~~~~~i~~~~~~i~~~  395 (396)
T PRK09257        377 VAG--LNESNIDYVAEAIAAV  395 (396)
T ss_pred             Eee--CCHHHHHHHHHHHHhh
Confidence            533  6899999999999875

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.81  E-value=1.9e-17  Score=164.77  Aligned_cols=305  Identities=14%  Similarity=0.103  Sum_probs=183.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG  191 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~  191 (480)
                      ....++.+.+++++|.+  .++|+++||+||..+++.++....   ..+|... .++.+|......|.+....+...+-.
T Consensus        73 ~~~~~~~~~l~~~~~~~--~~~~~~SGs~A~e~al~~~~~~~~---~~~~~~~-~~~~vl~~~~~~Hg~~~~~~~~~~~~  146 (400)
T PTZ00125         73 DVLGLAEKYITDLFGYD--KVLPMNSGAEAGETALKFARKWGY---EVKGIPE-NQAKIIFCNGNFSGRTIGACSASTDP  146 (400)
T ss_pred             HHHHHHHHHHHhCCCCC--EEEEeCCcHHHHHHHHHHHHHHHH---hccCCCC-CCCeEEEECCCcCCccHHHHhhcCCc
Confidence            34556677788887775  589999999999999999975310   1122210 11336667777788777766655421


Q ss_pred             CC---------CeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEEE
Q psy12303        192 TD---------NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWLH  258 (480)
Q Consensus       192 ~~---------~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l~  258 (480)
                      ..         .+..++.     .|+++|++.++.     .++++|+++.+++++|.+.|    +++|.++|++||++++
T Consensus       147 ~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~-----~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli  216 (400)
T PTZ00125        147 KCYNNFGPFVPGFELVDY-----NDVEALEKLLQD-----PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLI  216 (400)
T ss_pred             chhccCCCCCCCceEeCC-----CCHHHHHHHhCC-----CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence            10         1222322     289999998861     23899999999999999887    9999999999999999


Q ss_pred             eeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCcccccccccccCcccCCC
Q psy12303        259 VDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       259 vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  337 (480)
                      +|++|++.......... ...++ ..|++++  .|++++++ ++|+++.++ +.........   ...            
T Consensus       217 ~Dev~~g~g~~G~~~~~-~~~~~-~pd~~~~--sK~l~~g~~~ig~v~~~~-~~~~~~~~~~---~~~------------  276 (400)
T PTZ00125        217 VDEIQTGLGRTGKLLAH-DHEGV-KPDIVLL--GKALSGGLYPISAVLAND-DVMLVIKPGE---HGS------------  276 (400)
T ss_pred             EeccccCCCccchhhHH-HhcCC-CCCEEEE--cccccCCCcCcEEEEEcH-HHHhhccCCC---CCC------------
Confidence            99999764322111111 12333 5688775  49998775 889888754 3433321100   000            


Q ss_pred             CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC----CCeEEecCCceeEEEEEeecCccCCCc
Q psy12303        338 DKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP----DKFYLILEPEMVNVSFWYLPTRVRNMP  413 (480)
Q Consensus       338 ~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~----~g~~~~~~~~~~~v~f~~~~~~~~~~~  413 (480)
                      +  + .+.+....++..+++.+..+++   .++..++.+++.+.|++ .    +.+..+ .+...++.+.+.+..  .. 
T Consensus       277 t--~-~~~~~~~~aa~~~l~~i~~~~~---~~~~~~~~~~l~~~l~~-l~~~~~~~~~~-~~~g~~~~v~~~~~~--~~-  345 (400)
T PTZ00125        277 T--Y-GGNPLACAVAVEALEVLKEEKL---AENAQRLGEVFRDGLKE-LLKKSPWVKEI-RGKGLLNAIVFDHSD--GV-  345 (400)
T ss_pred             C--C-CcCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHH-HHhcCCCeEEE-ecccEEEEEEEccCc--ch-
Confidence            0  0 1111222223333444322233   34555566666666655 3    222222 233333333332111  00 


Q ss_pred             hhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        414 HEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       414 ~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                                ...++.+.|.++|++ +.+.   + .+++|++ ++..+++++|++++++|++.+++
T Consensus       346 ----------~~~~~~~~l~~~Gv~-v~~~---~-~~~lRi~-~~~~~~~~~i~~~l~~l~~~l~~  395 (400)
T PTZ00125        346 ----------NAWDLCLKLKENGLL-AKPT---H-DNIIRFA-PPLVITKEQLDQALEIIKKVLKS  395 (400)
T ss_pred             ----------HHHHHHHHHHHCCeE-Eeec---C-CCEEEEE-CCccCCHHHHHHHHHHHHHHHHH
Confidence                      023567788888844 3332   2 4799999 77889999999999999987754

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.81  E-value=1.1e-17  Score=161.53  Aligned_cols=349  Identities=14%  Similarity=0.148  Sum_probs=209.1

Q ss_pred             CccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhc
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKM  153 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~  153 (480)
                      -|++..+.+.+....-+.+......  ...|..+|.+.++|+.    +++++|++.  +++|++||.|...+..+..   
T Consensus        39 v~iDLltDsgT~aMs~~q~a~~~~G--De~yag~~s~~~lE~~----va~~~G~~~--av~v~sGT~Al~ll~~l~l---  107 (450)
T TIGR02618        39 VYIDLLTDSGTNAMSDKQWAGLMMG--DEAYAGSRNFYHLERT----VRELYGFKY--VVPTHQGRGAENLLSQIAI---  107 (450)
T ss_pred             eEEEcccCCCcHHHHHHHHHHhhhc--chhhcCCCcHHHHHHH----HHHHHCCCe--EEEcCCHHHHHHHHHHhCC---
Confidence            4777776666633222223333332  2358888888888877    778889886  9999999999765432111   


Q ss_pred             CchhHhcCCCccCCceEEEecCCCchhHHHH-HHHcCCCCCCeEEeeCC----------CCCCCCHHHHHHHHHHHHHCC
Q psy12303        154 FPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC-AAVCGLGTDNCVEVPSD----------KRGRLIPSELERLVLERKAKG  222 (480)
Q Consensus       154 ~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~-~~~~g~~~~~v~~v~~~----------~~~~~d~~~L~~~i~~~~~~~  222 (480)
                                 .||+ +|  +..+|+....+ ....|.   .++-++.+          .+|.+|+++|+++|++...  
T Consensus       108 -----------~pGD-eV--psn~~f~Tt~ahIe~~Ga---v~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~--  168 (450)
T TIGR02618       108 -----------KPGD-YV--PGNMYFTTTRYHQEKNGA---TFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGA--  168 (450)
T ss_pred             -----------CCcC-EE--CCceeHHHHHHHHHhCCe---EEEeeecccccccccCCCCCCCcCHHHHHHHhccccC--
Confidence                       1666 55  55788766666 566665   44445333          3589999999999986321  


Q ss_pred             CccEEEEeccCCCcc-ccc---cChHHHHHHHHHcCcEEEeeccccccc-ccccc----c-cCcc----cCCCCCCccce
Q psy12303        223 DIPFFVNCTSGTTVL-GAF---DPIEEIADICQKYNMWLHVDAAWGGGL-LLSKK----Y-RHPR----LTGIERADSVT  288 (480)
Q Consensus       223 ~~~~~v~~~~~~~~~-G~~---~~l~~I~~i~~~~~~~l~vD~a~~~~~-~~~~~----~-~~~~----~~~~~~~D~~~  288 (480)
                      .++.+|.++..+|.. |..   .++++|.++|++||+++|.|+|+..+- .+...    + ..|.    ..-.+.+|+++
T Consensus       169 ~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~  248 (450)
T TIGR02618       169 DKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCT  248 (450)
T ss_pred             cccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEE
Confidence            124577777777766 677   568999999999999999999998743 22211    1 0001    11234799999


Q ss_pred             eCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHH
Q psy12303        289 WNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQI  368 (480)
Q Consensus       289 ~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~  368 (480)
                      +|+||..++|. .|++.++++++...+......| .+.       ..+|   .-.+|..  .++..+|...-   -....
T Consensus       249 ~S~~Kd~~~~~-GG~l~~~d~~l~~k~r~~~~~~-eG~-------~tyG---gla~r~~--~ala~gL~e~~---~~~y~  311 (450)
T TIGR02618       249 MSGKKDCLVNI-GGFLCMNDDEMFQSAKELVVVF-EGM-------PSYG---GLAGRDM--EAMAIGIREAV---DYEYI  311 (450)
T ss_pred             EeeccCCCCCC-ceEEEeCCHHHHHHHHHHhhhc-CCc-------cccC---chhhhhH--HHHHHHHHHhh---hHHHH
Confidence            99999999987 4677779988777665443333 110       0011   1011111  12222333211   12556


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh-ccc-------EEE
Q psy12303        369 DRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGT-------MMV  440 (480)
Q Consensus       369 ~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~-------~~~  440 (480)
                      ++....+++|.+.|.+ . |+.++.++..+.+.+... .-+...+..+    +-  ...+...|.. .|+       +..
T Consensus       312 ~~r~~~a~~La~~L~~-~-Gvpv~~p~ggh~V~vda~-~~lph~~~~~----~p--~~al~~~ly~~~gir~~e~g~~~~  382 (450)
T TIGR02618       312 EHRVKQVRYLGDKLKA-A-GVPIVEPVGGHAVFLDAR-RFLPHIPQDQ----FP--AQSLAASIYVETGVRSMERGIVSA  382 (450)
T ss_pred             HHHHHHHHHHHHHHHH-C-CCcccCCCCcceEEEEhH-HhCCCCChhh----Ch--HHHHHHHHHHHhCccEEeecceec
Confidence            7777789999999999 4 999875555544444221 1000111111    10  1223333332 332       211


Q ss_pred             eeeeeCCc-----ccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        441 GYQPLNDL-----PNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       441 ~~~~~~~~-----~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      ...+..+.     -..+|++++-..-|.+++|+++++|..+.+
T Consensus       383 ~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~  425 (450)
T TIGR02618       383 GRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYK  425 (450)
T ss_pred             ccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHh
Confidence            11111111     257999988888899999999999988765

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.81  E-value=1.9e-17  Score=162.91  Aligned_cols=306  Identities=15%  Similarity=0.066  Sum_probs=187.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC-ceEEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG-QLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g-~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .+.+.++.+++++..+.  ..++|++|||+||..|++.++...     .++.   +| +..|......|.+...++...|
T Consensus        77 ~~~~~~la~~l~~~~~~--~~v~f~~SGseA~e~Aik~ar~~~-----~~~~---~~r~~ii~~~~~yHG~t~~~~~~s~  146 (395)
T PRK03715         77 NEPMAKLAGLLTQHSCF--DKVFFANSGAEANEGAIKLARKWG-----RKHK---NGAYEIITFDHSFHGRTLATMSASG  146 (395)
T ss_pred             CHHHHHHHHHHhhccCC--CEEEEeCCcHHHHHHHHHHHHHHh-----hccC---CCCcEEEEECCCcCCChHHHHhhcC
Confidence            56677777888776544  359999999999999999998631     1111   12 3356666678888888877766


Q ss_pred             CCCCCeEEeeCCCCC----CCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEEEeec
Q psy12303        190 LGTDNCVEVPSDKRG----RLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWLHVDA  261 (480)
Q Consensus       190 ~~~~~v~~v~~~~~~----~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l~vD~  261 (480)
                      .......+.|...+.    .-|++++++.+++.      +++|+++..+...|.+.|    +++|.++|++||+++|+|+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DE  220 (395)
T PRK03715        147 KPGWDTIFAPQVPGFPKAELNDIASVEKLITDK------TVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDE  220 (395)
T ss_pred             CcccccCCCCCCCCceeeCCchHHHHHHHcCCC------ceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence            421111111211111    13788888888643      889999999999998877    9999999999999999999


Q ss_pred             cccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccc
Q psy12303        262 AWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVI  341 (480)
Q Consensus       262 a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  341 (480)
                      +|+++......+.. ...++ .+|++++  .|.++++++.|.++.+++ ... .   ......            +++  
T Consensus       221 v~tG~GRtG~~~a~-~~~gv-~PDi~t~--gK~lg~G~p~~av~~~~~-i~~-~---~~~~~~------------~T~--  277 (395)
T PRK03715        221 VQTGCGRTGTLFAY-ELSGI-EPDIMTL--GKGIGGGVPLAALLAKAE-VAV-F---EAGDQG------------GTY--  277 (395)
T ss_pred             cccCCCCCcchhhH-hhcCC-CCceeee--hhhhhCCcceEEEEEccc-ccc-c---cCCCcC------------CCC--
Confidence            99975443333222 23355 5898775  599988788888887654 221 0   111100            011  


Q ss_pred             cCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEecCCceeEEEEEeecCccCCCchhhHH
Q psy12303        342 QCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP---DKFYLILEPEMVNVSFWYLPTRVRNMPHEKRL  418 (480)
Q Consensus       342 ~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~---~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~  418 (480)
                       .+.+....++.++|..+..   .+..++..++.++|.+.|++ +   .++.-+ .-.+.++.+.+...         ..
T Consensus       278 -~g~pl~~aaala~L~~l~~---~~l~~~~~~~g~~l~~~L~~-l~~~~~i~~v-rG~Glm~~i~l~~~---------~~  342 (395)
T PRK03715        278 -NGNPLMTAVGVAVISQLLA---PGFLEGVRARGEYLKEKLLE-LSEERGLEGE-RGEGLLRALLLGKD---------IG  342 (395)
T ss_pred             -CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHH-HhhcCCcCeE-EcceeEEEEEecCc---------hH
Confidence             1222233344455555422   34667888888888888875 2   233222 12233333332110         00


Q ss_pred             HHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        419 NILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       419 ~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      ..+    .+....+.++|.++...    + .+.+|++ ++..+|++||+++++.|++.++++
T Consensus       343 ~~~----~~~~~~~~~~Gi~~~~~----~-~~~lR~~-p~l~~t~~ei~~~~~~l~~~l~~~  394 (395)
T PRK03715        343 PQI----VEKARDMQPDGLLLNAP----R-PNLLRFM-PALNVTTEEIDQMIAMLRSVLDKL  394 (395)
T ss_pred             HHH----HHHHHhccCCCEEEeec----C-CCEEEEe-CCcccCHHHHHHHHHHHHHHHHhh
Confidence            001    11222333447443221    2 3689999 999999999999999999987653

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.81  E-value=2.2e-17  Score=163.92  Aligned_cols=234  Identities=17%  Similarity=0.137  Sum_probs=161.2

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH----HHHcCCC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC----AAVCGLG  191 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~----~~~~g~~  191 (480)
                      ++.+.++++.|.+.  .+++++|+.|+..++.++..              ||+ .|+++...|.+....    +...|+ 
T Consensus        67 ~le~~lA~l~g~~~--al~~~SG~~Ai~~al~all~--------------pGd-~VIv~~~~y~~t~~~~~~~~~~~G~-  128 (427)
T PRK05994         67 VLEERVAALEGGTA--ALAVASGHAAQFLVFHTLLQ--------------PGD-EFIAARKLYGGSINQFGHAFKSFGW-  128 (427)
T ss_pred             HHHHHHHHHhCCCc--EEEEcCHHHHHHHHHHHHhC--------------CCC-EEEEecCcchhHHHHHHHHHHhcCc-
Confidence            34455888888875  88999999999999887754              556 777887888765443    455566 


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                        +++.++.+     |+++++++++++      +++|++++++|++|.+.|+++|.++|+++|+++++|++++.+...- 
T Consensus       129 --~v~~vd~~-----d~~~l~~ai~~~------tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~~-  194 (427)
T PRK05994        129 --QVRWADAD-----DPASFERAITPR------TKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIR-  194 (427)
T ss_pred             --EEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccCC-
Confidence              77777754     889999988764      8999999999999999999999999999999999999998765432 


Q ss_pred             cccCcccCCCCCCccceeCccccCCCccc-ceEEEEeCchhhHhhhcCCcccccccccccCc--cc-CCC----------
Q psy12303        272 KYRHPRLTGIERADSVTWNPHKLMGTLLQ-CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDV--RY-DTG----------  337 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~hK~~~~p~~-~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~-~~~----------  337 (480)
                      ...+       ++|+++.|+||+++++.+ .|++++...... -......+++...+.....  .. +.+          
T Consensus       195 pl~~-------gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~-~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (427)
T PRK05994        195 PIEH-------GADIVVHSLTKFLGGHGNSMGGIIVDGGTFD-WSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARV  266 (427)
T ss_pred             cccc-------CCcEEEEcCccccCCCCCcEEEEEEeCCccc-cccccccccccCCcchhhhhhHHHHhhhhhhHHHHHH
Confidence            2234       899999999999997653 566665422110 0000011111110000000  00 000          


Q ss_pred             CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        338 DKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       338 ~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      ......|...+...+|+.++.  .+.+..++++..+++..+.+.|++ +|++.-+
T Consensus       267 ~~~~~~G~~~~~~~A~l~~~~--l~tL~~r~~~~~~~a~~la~~L~~-~p~v~~v  318 (427)
T PRK05994        267 LGLRDLGPAISPFNAFLILTG--IETLPLRMQRHSDNALAVAEWLKG-HPKVSWV  318 (427)
T ss_pred             HHHHhcCCCCCHHHHHHHHcC--cccHHHHHHHHHHHHHHHHHHHHh-CCCccEE
Confidence            000112334566777776654  677889999999999999999999 8987643

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.80  E-value=4.7e-18  Score=167.41  Aligned_cols=221  Identities=14%  Similarity=0.115  Sum_probs=159.9

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhH----
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV----  181 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~----  181 (480)
                      ..|....+|    +.++++.|.+  ..+++++|+.|+..++.+...              ||+ +|+++...|...    
T Consensus        68 ~~p~~~~le----~~lA~l~g~~--~al~~~sG~~Ai~~~l~all~--------------~Gd-~Vl~~~~~~~~t~~~~  126 (403)
T PRK07810         68 GNPTVSMFE----ERLRLIEGAE--ACFATASGMSAVFTALGALLG--------------AGD-RLVAARSLFGSCFVVC  126 (403)
T ss_pred             CCchHHHHH----HHHHHHhCCC--cEEEECChHHHHHHHHHHHhC--------------CCC-EEEEccCCcchHHHHH
Confidence            445544555    4588888976  489999999999988877643              556 677777555333    


Q ss_pred             HHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeec
Q psy12303        182 RSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDA  261 (480)
Q Consensus       182 ~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~  261 (480)
                      ...+...|+   ++++++.+     |+++++++++++      +++|++++++|++|.+.|+++|.++|+++|+++++|+
T Consensus       127 ~~~~~~~G~---~v~~vd~~-----d~~~l~~ai~~~------tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~  192 (403)
T PRK07810        127 NEILPRWGV---ETVFVDGE-----DLSQWEEALSVP------TQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDN  192 (403)
T ss_pred             HHHHHHcCc---EEEEECCC-----CHHHHHHhcCcC------ceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEEC
Confidence            344555666   77888753     899999999875      8999999999999999999999999999999999999


Q ss_pred             cccccccccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCc
Q psy12303        262 AWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDK  339 (480)
Q Consensus       262 a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  339 (480)
                      +|+.+....+ ...       ++|+++.|++|+++++..  .|+++.+ +..+....   ..+...              
T Consensus       193 a~a~~~~~~~-~~~-------gaDivv~S~tK~l~g~g~~~gG~v~~~-~~~~~~~l---~~~~~~--------------  246 (403)
T PRK07810        193 VFATPLLQRG-LPL-------GADVVVYSGTKHIDGQGRVLGGAILGD-REYIDGPV---QKLMRH--------------  246 (403)
T ss_pred             CCCccccCCh-hhc-------CCcEEEccCCceecCCcCceeEEEEeC-hHHHHHHH---HHHHHH--------------
Confidence            9987654322 133       789999999999986432  3555544 43332110   011100              


Q ss_pred             cccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        340 VIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       340 ~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                         .+.......+|+.++.  .+.+..++++..+++..+.+.|++ +|.+.-+.
T Consensus       247 ---~g~~~s~~~a~l~l~~--L~tl~~R~~~~~~~a~~~a~~L~~-~p~v~~V~  294 (403)
T PRK07810        247 ---TGPALSAFNAWVLLKG--LETLALRVRHSNASALRIAEFLEG-HPAVRWVR  294 (403)
T ss_pred             ---hCCCCCHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHHHHhc-CCCccEEE
Confidence               1122455677776654  677899999999999999999999 88876443

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.80  E-value=4e-17  Score=163.24  Aligned_cols=333  Identities=10%  Similarity=0.029  Sum_probs=193.9

Q ss_pred             HhHHHHHHHHcCcC-----CcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHh
Q psy12303         87 SMAGEWLIATANTN-----MFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKE  159 (480)
Q Consensus        87 ~~~~~~l~~~~~~~-----~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~  159 (480)
                      ....+.+...++..     ...|....+..++.+.+.+++.+..|.  +++++++|+|+++|+..++.+..+.       
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~-------  120 (416)
T PRK09440         48 DYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGR-------  120 (416)
T ss_pred             HHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhcc-------
Confidence            34445555544332     134554455678888888888887774  6678999999999999888877531       


Q ss_pred             cCCCccCCceEEEe-cCCCchhHHHHHHHcCC-CCCCeEEeeCCC---CCCCCHHHHHHHHHHHHHCCCccEEEEeccCC
Q psy12303        160 KGLSAIKGQLVMFT-SDQCHYSVRSCAAVCGL-GTDNCVEVPSDK---RGRLIPSELERLVLERKAKGDIPFFVNCTSGT  234 (480)
Q Consensus       160 ~g~~~~~g~~~vl~-~~~~h~s~~~~~~~~g~-~~~~v~~v~~~~---~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~  234 (480)
                       + ...||+ .|++ ..++++.+...+...+. .......++++.   ++.+|+++|+  +.+      +++++++++++
T Consensus       121 -~-~~~~gd-~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~------~~~~i~l~~P~  189 (416)
T PRK09440        121 -R-ADGSLK-KILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDE------DTGAICVSRPT  189 (416)
T ss_pred             -c-cCCCCC-eEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cCC------CceEEEEecCC
Confidence             0 001445 6777 57888887776654442 101122233333   3578998887  222      27899999999


Q ss_pred             CccccccC---hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchh
Q psy12303        235 TVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGL  311 (480)
Q Consensus       235 ~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~  311 (480)
                      ||||.+.+   +++|.++|++|++++++|++|+...... .+.. .......--+++.|++|++..+..+|+++. ++.+
T Consensus       190 NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~-~~~~-~~~~~~~~vI~~~SfSK~~~pGlRiG~~i~-~~~l  266 (416)
T PRK09440        190 NPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGI-IFSE-ATPLWNPNIILCMSLSKLGLPGVRCGIVIA-DEEI  266 (416)
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCc-chhh-cCccccCCeEEEecccccCCCcceEEEEeC-CHHH
Confidence            99999977   6788889999999999999997432110 0000 001111122556799998665578998875 4454


Q ss_pred             hHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHH----H-HHHHHHHHHHHHHHHHhcCC
Q psy12303        312 LISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFE----K-QIDRLMELAEYMVKKIKSMP  386 (480)
Q Consensus       312 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~----~-~~~~~~~l~~~l~~~l~~~~  386 (480)
                      ++........+...                     ...+...++...+....+.    + +.+...+..+.+.+.|.+++
T Consensus       267 ~~~~~~~~~~~~~~---------------------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l  325 (416)
T PRK09440        267 IEALSNMNGIISLA---------------------PGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYL  325 (416)
T ss_pred             HHHHHHHHHHhccC---------------------CCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44332111111000                     1233333333333211121    2 23334455566666666522


Q ss_pred             C--CeEEecCCceeEEEEEeecC-ccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC-Cc-------ccEEEEe
Q psy12303        387 D--KFYLILEPEMVNVSFWYLPT-RVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN-DL-------PNFFRNI  455 (480)
Q Consensus       387 ~--g~~~~~~~~~~~v~f~~~~~-~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~-~~-------~~~~R~~  455 (480)
                      +  ++.+ ..|+.+.++|...+. ...              ..++.+.+.+.|+.+.....+. +.       .+++|++
T Consensus       326 ~~~~~~~-~~p~gg~fiw~~~~~~~~~--------------~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis  390 (416)
T PRK09440        326 PDEPCLI-HKPEGAIFLWLWFKDLPIT--------------TEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMN  390 (416)
T ss_pred             ccCCeEE-ecCCCceEEEEECCCCCCC--------------HHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEE
Confidence            2  3554 357666666644432 111              1345566777775544322221 10       2589999


Q ss_pred             cccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        456 ISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       456 ~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.   .++++++.++++|+++++.
T Consensus       391 ~~---~~~~~l~~~i~~l~~~~~~  411 (416)
T PRK09440        391 YV---QDDEEIEKGIAILAEEVEK  411 (416)
T ss_pred             ec---CCHHHHHHHHHHHHHHHHH
Confidence            54   2689999999999887653

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.80  E-value=1.2e-16  Score=159.32  Aligned_cols=318  Identities=12%  Similarity=0.053  Sum_probs=187.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCce-EEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQL-VMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~-~vl~~~~~h~s~~~~~~~~g  189 (480)
                      ++...++.+.++++++-.-..+.|+++||+|+..|++.+|...    ..+|.   +|+. +|......|.....+....+
T Consensus        84 ~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~----~~~~~---~~r~~ii~~~~~yHG~t~~~ls~~~  156 (423)
T PRK05964         84 HEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYW----RNRGE---PGRSRFLSLRGGYHGDTIGTMSVGD  156 (423)
T ss_pred             CHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHH----HhcCC---CCCcEEEEEcCCcCCccHHHHhcCC
Confidence            3455567788888874222469999999999999999998741    11121   2232 44455556665545444333


Q ss_pred             CCC---------CCeEEeeCCCC--CCCCHHHHHHHHHHHHHCCCccEEEEecc-CCCccccccC----hHHHHHHHHHc
Q psy12303        190 LGT---------DNCVEVPSDKR--GRLIPSELERLVLERKAKGDIPFFVNCTS-GTTVLGAFDP----IEEIADICQKY  253 (480)
Q Consensus       190 ~~~---------~~v~~v~~~~~--~~~d~~~L~~~i~~~~~~~~~~~~v~~~~-~~~~~G~~~~----l~~I~~i~~~~  253 (480)
                      -..         ..+..+|...+  ...+++++++.+++.   +..+++|+++. .+...|...+    +++|.++|++|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~---~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~  233 (423)
T PRK05964        157 RGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKH---AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRH  233 (423)
T ss_pred             CccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhC---CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHc
Confidence            210         12333443321  111267777777632   23477888877 4777787654    99999999999


Q ss_pred             CcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcC--Cccccccccccc
Q psy12303        254 NMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQM--SAEYLFMQDKLY  330 (480)
Q Consensus       254 ~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~--~~~~l~~~~~~~  330 (480)
                      |+++++|++|.+.......+.. ...++ .+|++++  .|+++++ .+.|+++. +++..+.....  ...++..     
T Consensus       234 g~llI~DEv~tg~gr~G~~~a~-~~~~v-~pDi~~~--~K~l~gG~~p~~av~~-~~~i~~~~~~~~~~~~~~~~-----  303 (423)
T PRK05964        234 GVLLIFDEIATGFGRTGTLFAC-EQAGV-SPDIMCL--SKGLTGGYLPLAATLC-TAEIFEAFYSDDRAKAFMHS-----  303 (423)
T ss_pred             CCEEEEechhhCCCcCcchhHH-HhcCC-CCCeeee--ehhhhcCcccceEEEE-cHHHHHhhhcCCcccccccC-----
Confidence            9999999999765433222111 22344 5788774  5999877 57888775 44444432211  0001100     


Q ss_pred             CcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec--CCceeEEEEEeecCc
Q psy12303        331 DVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTR  408 (480)
Q Consensus       331 ~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~--~~~~~~v~f~~~~~~  408 (480)
                            +++   .+......++.++++.+..   ....++..++.+++.+.|++ ..++..+.  ...+.++.+.+....
T Consensus       304 ------~T~---~~np~~~aaa~a~l~~l~~---~~~~~~~~~~g~~l~~~l~~-l~~~~~i~~vrg~Gl~~~i~l~~~~  370 (423)
T PRK05964        304 ------PSY---TANPLACAAANASLDLFED---EPVLERVAALSAGLAEGLEP-FRDLPGVADVRVLGAIGAVELDRPV  370 (423)
T ss_pred             ------CCC---CcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHh-hccCCCeEEeecccEEEEEEeccCc
Confidence                  000   1111222333334443322   34567888888888888876 43332222  122333444432111


Q ss_pred             cCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        409 VRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       409 ~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                       .    .       .....+.+.|.++|.++ .+.     .+.+|++ ++..+|++|||++++++++.+++|
T Consensus       371 -~----~-------~~~~~l~~~l~~~Gv~v-~~~-----~~~lR~~-p~l~~t~edId~~v~~l~~al~~~  423 (423)
T PRK05964        371 -L----E-------RDGPALRAFALERGVLL-RPL-----GNTIYLM-PPYIITAEELDRITDAIVEVADEL  423 (423)
T ss_pred             -c----h-------hHHHHHHHHHHHCCeEE-Eec-----CCEEEEe-CCcccCHHHHHHHHHHHHHHHhhC
Confidence             0    0       01246778888898544 331     2589999 999999999999999999998875

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.80  E-value=5.7e-17  Score=160.01  Aligned_cols=291  Identities=14%  Similarity=0.127  Sum_probs=176.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      .+++.++.+++++..+.+  .++++++|++||..|++.++..       .|.     +.+|......|.+....+...+.
T Consensus        70 ~~~~~~la~~l~~~~~~~--~~~~~~sG~~a~~~A~~~a~~~-------~g~-----~~vi~~~~~~Hg~~~~~~~~~~~  135 (377)
T PRK02936         70 NSLQEEVASLLAENSAGD--LVFFCNSGAEANEAALKLARKH-------TGK-----SKIVTFEQSFHGRTFGTMSATGQ  135 (377)
T ss_pred             CHHHHHHHHHHHhcCCCC--EEEEeCCcHHHHHHHHHHHHHh-------cCC-----CeEEEECCCcCCCcHHhhhccCC
Confidence            567777778888776643  5999999999999999988753       111     32555556677776666655442


Q ss_pred             CC---------CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEE
Q psy12303        191 GT---------DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWL  257 (480)
Q Consensus       191 ~~---------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l  257 (480)
                      ..         ..+..+|.+     |+++|++.+++.      +++|+++..+++.|.+.+    +++|.++|++||+++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~~------~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~l  204 (377)
T PRK02936        136 EKIKEGFGPLLPGFTHVPFN-----DIKALKEVMNEE------VAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALL  204 (377)
T ss_pred             ccccccCCCCCCCceEeCCC-----CHHHHHHhccCC------eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence            11         022333333     788999888654      889999999988887643    999999999999999


Q ss_pred             EeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCC
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  337 (480)
                      ++|++|.+.......... ...++ ..|+++  +.|.++++++.|+++.+ +++.......   .. .           .
T Consensus       205 I~DEv~~g~g~~g~~~~~-~~~~~-~~di~t--~sK~l~~G~~ig~v~~~-~~~~~~~~~~---~~-~-----------~  264 (377)
T PRK02936        205 IIDEVQTGIGRTGTLFAY-EQFGL-DPDIVT--VAKGLGNGIPVGAMIGK-KELGTAFGPG---SH-G-----------S  264 (377)
T ss_pred             EEeccccCCCcCchhhHH-HhhCC-CCcEEE--EcccccCCCccEEEEEc-HHHHhhccCC---CC-C-----------C
Confidence            999999764332211111 11233 457655  78999976778887754 4443322110   00 0           0


Q ss_pred             CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeEEEEEeecCccCCCch
Q psy12303        338 DKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVNVSFWYLPTRVRNMPH  414 (480)
Q Consensus       338 ~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~v~f~~~~~~~~~~~~  414 (480)
                        ++ ++.+....++.++++.+.   .++..++..++.+++.+.|++.   .+.+..+ .+...++.+.+. ..      
T Consensus       265 --t~-~~~~~~~aaa~a~l~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~~~g~~~~i~~~-~~------  330 (377)
T PRK02936        265 --TF-GGNPLAMAAAKEVLQVIK---QPSFLEEVQEKGEYFLQKLQEELEHLECVKNI-RGKGLMIGIECT-EE------  330 (377)
T ss_pred             --CC-CCCHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHhhCCcEEeE-eecceEEEEEec-ch------
Confidence              00 111122223333333321   1344456666666666666541   2333222 122323333221 10      


Q ss_pred             hhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        415 EKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       415 ~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                                ...+.+.|.++|+++...    + .+++|++ ++..+++++|++++++|+++
T Consensus       331 ----------~~~~~~~l~~~gv~v~~~----g-~~~lRi~-p~~~~~~~~i~~~i~~l~~~  376 (377)
T PRK02936        331 ----------VAPVIEQLREEGLLVLSA----G-PNVIRLL-PPLVVTKEELDQAVYLLKKV  376 (377)
T ss_pred             ----------HHHHHHHHHHCCeEEecC----C-CCEEEEE-CCcccCHHHHHHHHHHHHHh
Confidence                      135667788888554332    2 4699999 87889999999999999875

>KOG1360|consensus

Probab=99.80  E-value=2.1e-17  Score=151.58  Aligned_cols=299  Identities=14%  Similarity=0.137  Sum_probs=207.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        110 FILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      ...+|.+    ||++-+-+.  ..+.++.--||-..|..+...            .| +.+|+..+..|.|.....+..+
T Consensus       218 hv~LE~e----LA~LHqK~a--ALlFsSCfVANDstLftLak~------------lp-gcei~SD~gNHASMI~GIrns~  278 (570)
T KOG1360|consen  218 HVRLEAE----LADLHQKEA--ALLFSSCFVANDSTLFTLAKK------------LP-GCEIFSDEGNHASMIQGIRNSR  278 (570)
T ss_pred             hhhHHHH----HHHHhcCcc--eeeeeeeeeccchHHHHHHHH------------CC-CcEEeccccchHHHHHHhhhcC
Confidence            3455555    888877654  555566666777676665443            15 4589999999999999999888


Q ss_pred             CCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccc
Q psy12303        190 LGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLL  269 (480)
Q Consensus       190 ~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~  269 (480)
                      +.  + .....+     |+++|++.++...  ...|++|.+....++.|++.||+||++++++||+...+|++|+.|.+-
T Consensus       279 v~--K-~IFrHN-----D~~hL~~lL~~~~--~svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG  348 (570)
T KOG1360|consen  279 VP--K-HIFRHN-----DLDHLEQLLQSSP--KSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYG  348 (570)
T ss_pred             Cc--c-eeeccC-----CHHHHHHHHHhCC--CCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhcccc
Confidence            73  3 233444     9999999998642  245899999999999999999999999999999999999999988652


Q ss_pred             cccccCcccCC-CCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCC
Q psy12303        270 SKKYRHPRLTG-IERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHND  348 (480)
Q Consensus       270 ~~~~~~~~~~~-~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~  348 (480)
                      ......-..+| +..+|+++..+.|.+|+   .|..+...+.+.+-..+..+++++.+...+                .-
T Consensus       349 ~rGaGvgerdGvm~kvDiIsGTLgKafGc---VGGYIAat~~LvDmiRSyAaGFIFTTSLPP----------------~v  409 (570)
T KOG1360|consen  349 PRGAGVGERDGVMHKVDIISGTLGKAFGC---VGGYIAATRKLVDMIRSYAAGFIFTTSLPP----------------MV  409 (570)
T ss_pred             CCCCCccccCCcchhhhhcccchhhhccc---ccceehhhhhHHHHHHHhcCceEEecCCCh----------------HH
Confidence            21110001122 34789999999999987   566666677676666666778876643211                01


Q ss_pred             chHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHH
Q psy12303        349 IFKLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPI  427 (480)
Q Consensus       349 ~l~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~  427 (480)
                      ...+..+.+.+ +.+| +.+.+.++++.+++++.|.+  .|+.++..|. .++-.+.     .+.   .    +   +.+
T Consensus       410 l~GAleaVr~lk~~eg-~~lR~~hqrnv~~~kq~l~~--~GiPVi~~pS-HIiPv~v-----gda---~----l---~~~  470 (570)
T KOG1360|consen  410 LAGALEAVRILKSEEG-RVLRRQHQRNVKYVKQLLME--LGIPVIPNPS-HIIPVRV-----GDA---A----L---AKQ  470 (570)
T ss_pred             HHhHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHH--cCCcccCCCc-ceeeeec-----cCH---H----H---HHH
Confidence            11233333333 3455 45666778899999999999  7999876554 3333321     110   0    1   356


Q ss_pred             HHHHHHhcccEEEe----eeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        428 LKGRMMQAGTMMVG----YQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       428 i~~~l~~~g~~~~~----~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      +.+.|+.+..+++.    ++...| ..-+|+. +.+.+|++-++.+++.+..+-
T Consensus       471 ~sd~Li~~h~iYvQaINyPTV~rG-~E~LRia-PTP~HT~~mm~~lv~~l~~vw  522 (570)
T KOG1360|consen  471 ASDILISKHNIYVQAINYPTVARG-TERLRIA-PTPHHTPQMMNILVNALLDVW  522 (570)
T ss_pred             HHHHHHHhcCeEEEeccCCccccc-ceeeecC-CCCCCCHHHHHHHHHHHHHHH
Confidence            66777777767664    334445 5789999 999999999999999988654

>PRK06460 hypothetical protein; Provisional

Probab=99.80  E-value=2.8e-17  Score=160.87  Aligned_cols=213  Identities=17%  Similarity=0.127  Sum_probs=144.8

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCC----chhHHHHHHHcCCC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQC----HYSVRSCAAVCGLG  191 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~----h~s~~~~~~~~g~~  191 (480)
                      ++++.++++.|.+.  .+++++|++|+..++.+...              ||+ .|+++...    +..+...++..|+ 
T Consensus        49 ~L~~~lA~l~g~~~--~v~~~sG~~ai~~~l~al~~--------------~Gd-~Vl~~~~~~~~ty~~~~~~~~~~G~-  110 (376)
T PRK06460         49 ELTKKIVELENAEM--GVAFSSGMGAISTTALALLK--------------PGN-SVLVHRDMFGRSYRFFTDYLKNWGV-  110 (376)
T ss_pred             HHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHHhC--------------CCC-EEEEecCCcCcHHHHHHHHHHhhCc-
Confidence            34455889999865  45557778888888876643              556 66666543    3334466677777 


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                        ++..++.+     +.+.+++.+++      ++++|++++++||+|.+.|+++|.++|+++|+++++|++|+.+.. ..
T Consensus       111 --~v~~~~~~-----~~~~l~~~~~~------~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~-~~  176 (376)
T PRK06460        111 --NVDASNPG-----SDNIIEKAKSK------RYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPIN-QK  176 (376)
T ss_pred             --EEEEECCC-----CHHHHHHhcCC------CceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCcccc-CC
Confidence              67777764     22334443332      389999999999999999999999999999999999999986532 11


Q ss_pred             cccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCc
Q psy12303        272 KYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI  349 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~  349 (480)
                      ....       ++|+++.|++|+++++.+  .|+++ .++++..........+                     +....+
T Consensus       177 ~l~~-------~~divv~S~sK~l~G~~~~~~G~~~-~~~~l~~~l~~~~~~~---------------------g~~~~~  227 (376)
T PRK06460        177 PLEL-------GADIVVHSASKFLAGHNDVIAGLAA-GYGKLLNVIDQMRRTL---------------------GTSLDP  227 (376)
T ss_pred             hhhc-------CCCEEEeecceeccCCCCceEEEEe-cCHHHHHHHHHHHHhc---------------------CCCCCH
Confidence            1112       679999999999875432  56554 5555544332111111                     000223


Q ss_pred             hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        350 FKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       350 l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      ..+|..++  |.+.++.++++..++++++.+.|++ +|.+.-+
T Consensus       228 ~~a~~~l~--~~~~l~~r~~~~~~n~~~l~~~L~~-~p~v~~v  267 (376)
T PRK06460        228 HAAYLTLR--GIKTLKIRMDVINRNAEQIAEFLEG-HPKVVKV  267 (376)
T ss_pred             HHHHHHHh--chhhHHHHHHHHHHHHHHHHHHHHc-CCCccEE
Confidence            45555554  4678889999999999999999999 7877543

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.80  E-value=9.9e-17  Score=159.53  Aligned_cols=304  Identities=13%  Similarity=0.089  Sum_probs=176.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      .....++.++++++.|.+  .+++++||++|+..++++++...       +....+.+..+......|.....+....+.
T Consensus        80 ~~~~~~la~~l~~~~~~~--~v~~~~gg~eA~~~al~~a~~~~-------~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  150 (396)
T PRK02627         80 IEPQEELAEKLVELSGMD--KVFFCNSGAEANEAAIKLARKYG-------HKKGIEKPEIITAENSFHGRTLATLSATGQ  150 (396)
T ss_pred             CHHHHHHHHHHHhhcCCC--EEEECCCcHHHHHHHHHHHHHHh-------cccCCCCCeEEEECCCcCcccHHHHHhcCC
Confidence            466677888898887764  69999999999999999987641       111111132444555556554444444332


Q ss_pred             CCCCeEEeeCCCCC----CCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccc-cc---ChHHHHHHHHHcCcEEEeecc
Q psy12303        191 GTDNCVEVPSDKRG----RLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGA-FD---PIEEIADICQKYNMWLHVDAA  262 (480)
Q Consensus       191 ~~~~v~~v~~~~~~----~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~-~~---~l~~I~~i~~~~~~~l~vD~a  262 (480)
                      ........+...+.    .-|+++|++++.++      +++|+++.+++++|. +.   .+++|.++|++||+++++|++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~  224 (396)
T PRK02627        151 PKYQEGFEPLVEGFIYVPFNDIEALKAAITDK------TAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEV  224 (396)
T ss_pred             ccccccCCCCCCCceEeCCCCHHHHHHhcCCC------eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEech
Confidence            10000111221111    12889999988543      889999999999984 32   389999999999999999999


Q ss_pred             ccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcccc
Q psy12303        263 WGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQ  342 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  342 (480)
                      |++.......... ...++ ..|+++  +.|.++++.+.|+++.++ ..........     ..          .++   
T Consensus       225 ~~g~g~~g~~~~~-~~~~~-~pdi~t--~sK~~~~G~rig~~~~~~-~~~~~~~~~~-----~~----------~t~---  281 (396)
T PRK02627        225 QTGMGRTGKLFAY-QHYGI-EPDIMT--LAKGLGGGVPIGAVLAKE-KVADVFTPGD-----HG----------STF---  281 (396)
T ss_pred             hcCCCccCceeee-hhcCC-CCCEEE--EcchhhCCcccEEEEEcH-HHHhccCCCC-----CC----------CCC---
Confidence            9965332211111 12233 457665  669999778899988653 3333221100     00          000   


Q ss_pred             CCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeEEEEEeecCccCCCchhhHHH
Q psy12303        343 CGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLN  419 (480)
Q Consensus       343 ~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~  419 (480)
                      ++......++..+++.+..   ++..++..++.+++.+.|.+.   .+.+..+ ......+.+.+ +..           
T Consensus       282 ~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~i~~-~~~-----------  345 (396)
T PRK02627        282 GGNPLACAAALAVIEIIEE---EGLLENAAEVGEYLRAKLRELLEKYPGIKEV-RGLGLMIGIEL-DRP-----------  345 (396)
T ss_pred             CCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHhCCCeeee-ccCcEEEEEEe-cCc-----------
Confidence            1111122223333333222   234455555666666655440   2333222 22233333432 110           


Q ss_pred             HhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        420 ILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       420 ~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                           ..++.+.+.++|+++...    + .+++|++ ++...++++|++++++|++++++
T Consensus       346 -----~~~~~~~l~~~Gv~v~~~----~-~~~lRi~-~~~~~~~~~i~~~~~~l~~~l~~  394 (396)
T PRK02627        346 -----AAEIVKKALEKGLLINVT----G-DNVLRLL-PPLIISKEEIDEAVDRLEEVLKE  394 (396)
T ss_pred             -----HHHHHHHHHHCCeEEeec----C-CCEEEEE-CCcccCHHHHHHHHHHHHHHHHh
Confidence                 245778888888544332    2 3689999 77788999999999999998765

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.80  E-value=4.9e-18  Score=162.95  Aligned_cols=306  Identities=19%  Similarity=0.241  Sum_probs=183.7

Q ss_pred             hcChhhHHHHHHHHHHHHHHhCCCCCC---eEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCC---c
Q psy12303        105 EIAPVFILMETVVLEKMRQIIGWQGGD---SILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQC---H  178 (480)
Q Consensus       105 ~~~~~~~~~e~~~~~~la~~~g~~~~~---~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~---h  178 (480)
                      .......++|.-..+.++++||+++..   -+=.-||+.||+.++.++.+              ||| .|+.-+..   |
T Consensus        59 ~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl~--------------pGD-~Im~l~l~~GGH  123 (399)
T PF00464_consen   59 GGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALLK--------------PGD-TIMGLSLPHGGH  123 (399)
T ss_dssp             SSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT---------------TT--EEEEEEGGGT--
T ss_pred             cCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHHh--------------hcC-cEEecChhhccc
Confidence            344566789999999999999997422   23455788999999988875              667 44444333   5


Q ss_pred             hhHHHHHHH-----cCCCCCCeEEeeCC-CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHH
Q psy12303        179 YSVRSCAAV-----CGLGTDNCVEVPSD-KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQK  252 (480)
Q Consensus       179 ~s~~~~~~~-----~g~~~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~  252 (480)
                      .|+......     .|... +++..++| +++.+|.+++++.+++.+     |++|++  |.+..-...|++++.+||++
T Consensus       124 lshg~~~~~~~~~~~~~~~-~~~~y~~d~~~~~ID~d~l~~~a~~~k-----PklIi~--G~S~y~~~~d~~~~reIad~  195 (399)
T PF00464_consen  124 LSHGSSVNFKKISASGLYF-ESVPYPVDPDTGLIDYDELEKLAKEHK-----PKLIIC--GASSYPRPIDFKRFREIADE  195 (399)
T ss_dssp             GGGT-TTSHSBSSHHHHHS-EEEEEEB-TTTSSB-HHHHHHHHHHH-------SEEEE--E-SSTSS---HHHHHHHHHH
T ss_pred             ccccccccccccccccceE-EEEeeeeecCCCeECHHHHHHHHhhcC-----CCEEEE--CchhccCccCHHHHHHHHHh
Confidence            554443333     22211 56777888 578999999999998864     889888  33444556789999999999


Q ss_pred             cCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEe-------------CchhhHhhhcCC
Q psy12303        253 YNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFK-------------QDGLLISCNQMS  319 (480)
Q Consensus       253 ~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~-------------~~~~~~~~~~~~  319 (480)
                      .|+++++|.+|-.|.+....+..| +   +.+|+++++.||.+.+|. .|+++++             +.++.+......
T Consensus       196 vga~l~~D~sH~~GLIa~g~~~~P-~---~~ADvvt~sThKtl~GPr-ggiI~~~~~~~~~~~~~~~~~~~l~~~I~~av  270 (399)
T PF00464_consen  196 VGAYLMADISHIAGLIAGGLFPNP-F---PYADVVTGSTHKTLRGPR-GGIILTNKGSKNVDKKGKEIDEELAEKIDSAV  270 (399)
T ss_dssp             TT-EEEEE-TTTHHHHHTTSS--G-C---CTSSEEEEESSGGG-SSS--EEEEES-SEEEE-TTS-EEEHHHHHHHHHHH
T ss_pred             cCcEEEecccccccceehheecCc-c---ccceEEEeeccccccccC-ceEEEEcCCccccCCcccccHHHHHHHhcccc
Confidence            999999999999998877665552 2   368999999999999876 4888877             233333322111


Q ss_pred             cccccccccccCcccCCCCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-Cce
Q psy12303        320 AEYLFMQDKLYDVRYDTGDKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-PEM  397 (480)
Q Consensus       320 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~~~  397 (480)
                      -+.+                  +++-.. ...++..+++......+.++.++..++++.|.+.|.+  .|+.++.. .+.
T Consensus       271 fP~~------------------qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~--~G~~v~~ggTd~  330 (399)
T PF00464_consen  271 FPGL------------------QGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQE--RGFKVVTGGTDN  330 (399)
T ss_dssp             TTTT-------------------SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TT-EEGGGS-SS
T ss_pred             CCCc------------------ccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhh--CCcEEEECCCCC
Confidence            1111                  111111 2334445555544456789999999999999999999  79999853 344


Q ss_pred             eEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCC-----cccEEEEec---ccCCCCHHHHHHH
Q psy12303        398 VNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLND-----LPNFFRNII---SSAAVTEGDIDFL  469 (480)
Q Consensus       398 ~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~-----~~~~~R~~~---~~~~~t~~di~~~  469 (480)
                      ..+.+...+..+.              ..+..++|.+.| +.+.....++     ....+|+..   ......++|++++
T Consensus       331 H~vlvd~~~~~~~--------------g~~a~~~Le~~g-I~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~e~dm~~i  395 (399)
T PF00464_consen  331 HQVLVDLRSFGID--------------GKEAEKALEEAG-IIVNKNTIPGDRSPFVPSGLRLGTPALTRRGMKEEDMKEI  395 (399)
T ss_dssp             SEEEEEGGGGTS---------------HHHHHHHHHHTT-EE-EEE--TTTSTTTT-SEEEEESHHHHHTT--HHHHHHH
T ss_pred             CeEEEEecccccc--------------hHHHHHHHHhcC-eeecccccCCCCCCCCCCEEEECCHHHHhCCCCHHHHHHH
Confidence            4555543222211              234556666777 4444332222     146899983   2345678888887


Q ss_pred             HHHH
Q psy12303        470 LTEM  473 (480)
Q Consensus       470 ~~~l  473 (480)
                      .+.|
T Consensus       396 A~~I  399 (399)
T PF00464_consen  396 AELI  399 (399)
T ss_dssp             HHHH
T ss_pred             HhhC
Confidence            7654

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.80  E-value=9.4e-17  Score=158.75  Aligned_cols=299  Identities=13%  Similarity=0.089  Sum_probs=174.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG  191 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~  191 (480)
                      ....++.+++++++|.+  .+++++||++|+..++++++...    ...|   .+++.+++.+...|.+...+....+..
T Consensus        69 ~~~~~l~~~la~~~g~~--~~~~~~sg~~a~~~a~~~~~~~~----~~~~---~~~~~vi~~~~~yh~~~~~~~~~~~~~  139 (379)
T TIGR00707        69 EPQEELAEKLVEHSGAD--RVFFCNSGAEANEAALKLARKYT----GDKG---KEKKKIIAFENSFHGRTMGALSATGQP  139 (379)
T ss_pred             HHHHHHHHHHHhhCCCC--EEEEeCCcHHHHHHHHHHHHHHh----hccC---CCCCeEEEECCCcCCccHHHHHhcCCh
Confidence            45666778899999886  69999999999999999876420    0001   023434444444454433333322211


Q ss_pred             CCCeEEeeCCCCCCC----CHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc----ChHHHHHHHHHcCcEEEeeccc
Q psy12303        192 TDNCVEVPSDKRGRL----IPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD----PIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~----d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~----~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                      .......+...+...    |+++|++.+++.      +++|+++..++++|...    ++++|.++|+++|+++++|++|
T Consensus       140 ~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~  213 (379)
T TIGR00707       140 KYQKGFEPLVPGFSYAPYNDIESLKKAIDDE------TAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQ  213 (379)
T ss_pred             hhhccCCCCCCCceeeCCCCHHHHHHHhhhC------eeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence            000011222222211    899999988764      78999988877777642    3899999999999999999999


Q ss_pred             cccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccC
Q psy12303        264 GGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQC  343 (480)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  343 (480)
                      ++.......... ...++ ..|+++  ++|.++.+.++|+++.. ++............               .+   +
T Consensus       214 ~~~~~~g~~~~~-~~~~~-~~d~~t--~sK~~~~G~riG~~~~~-~~~~~~~~~~~~~~---------------~~---~  270 (379)
T TIGR00707       214 TGIGRTGKFFAY-EHYGI-EPDIIT--LAKGLGGGVPIGATLAK-EEVAEAFTPGDHGS---------------TF---G  270 (379)
T ss_pred             cCCCccchhhhH-HhcCC-CCCEEE--EcccccCCcccEEEEEc-HHHHhhhcCCCCCC---------------CC---C
Confidence            854321111110 11222 356554  68999977789998864 44443322110000               00   1


Q ss_pred             CCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEE--e-cCCceeEEEEEeecCccCCCchhhHHHH
Q psy12303        344 GRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYL--I-LEPEMVNVSFWYLPTRVRNMPHEKRLNI  420 (480)
Q Consensus       344 ~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~--~-~~~~~~~v~f~~~~~~~~~~~~~~~~~~  420 (480)
                      +..+...++.++|+.+..   .+..++.+++++++++.|.+ . +...  . .++....+.+.+ +..            
T Consensus       271 ~~~~~~~aa~aaL~~~~~---~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~g~~~~~~~-~~~------------  332 (379)
T TIGR00707       271 GNPLACAAALAVLEVIEK---ERLLENVKEKGDYFKERLEE-L-GKNYPNKEVRGKGLMLGIEL-EAP------------  332 (379)
T ss_pred             CCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHH-H-HhhCCCCccccCceEEEEEe-cCc------------
Confidence            111233344444554322   24556677777777777765 3 2111  0 112233333432 111            


Q ss_pred             hhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        421 LGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       421 l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                          ..++.+.|.+.|+.+...    + .+++|++ ++...|+++|++++++|+++
T Consensus       333 ----~~~~~~~l~~~Gv~v~~~----~-~~~lRi~-~~~~~t~~~i~~~~~~l~~~  378 (379)
T TIGR00707       333 ----CKDIVKKALEKGLLVNCA----G-PKVLRFL-PPLIITKEEIDEAVSALEEA  378 (379)
T ss_pred             ----HHHHHHHHHHCCcEEeeC----C-CCEEEEE-CCCcCCHHHHHHHHHHHHHh
Confidence                135667788888554432    2 4689999 77888999999999999875

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.80  E-value=8.1e-19  Score=152.73  Aligned_cols=164  Identities=27%  Similarity=0.294  Sum_probs=129.5

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH-HHHHHcCCCCCC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR-SCAAVCGLGTDN  194 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~-~~~~~~g~~~~~  194 (480)
                      +++++++++++.+..++++++|||+|+..++.+++.              +++ .|+++...|++.. ..+...|.   +
T Consensus         4 ~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~--------------~~~-~v~~~~~~~~~~~~~~~~~~g~---~   65 (170)
T cd01494           4 ELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLG--------------PGD-EVIVDANGHGSRYWVAAELAGA---K   65 (170)
T ss_pred             HHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCC--------------CCC-EEEEeecccceehhhHHHhcCC---E
Confidence            567889999976566799999999999999998864              224 7888888998888 77777777   7


Q ss_pred             eEEeeCCCCCCCCHH--HHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccccc
Q psy12303        195 CVEVPSDKRGRLIPS--ELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKK  272 (480)
Q Consensus       195 v~~v~~~~~~~~d~~--~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~  272 (480)
                      ++.++.+.++..+.+  .+++..     .+.+|++++++++++++|...|+++|.++|+++|+++|+|++|+++......
T Consensus        66 ~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~  140 (170)
T cd01494          66 PVPVPVDDAGYGGLDVAILEELK-----AKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPG  140 (170)
T ss_pred             EEEeccCCCCccchhhhhhhhcc-----ccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccc
Confidence            888888765443332  333322     2345899999999999999999999999999999999999999998875532


Q ss_pred             ccCcccCCCCCCccceeCccccCCCcccceEEEEe
Q psy12303        273 YRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFK  307 (480)
Q Consensus       273 ~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~  307 (480)
                      ..   .. ..++|+++.|+||++++ .++|++++|
T Consensus       141 ~~---~~-~~~~d~~~~s~~K~~~~-~~~G~l~~~  170 (170)
T cd01494         141 VL---IP-EGGADVVTFSLHKNLGG-EGGGVVIVK  170 (170)
T ss_pred             cc---cc-cccCCEEEEEcccccCC-CceEEEEeC
Confidence            11   11 12799999999999997 789999875

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK08637 hypothetical protein; Provisional

Probab=99.80  E-value=6.6e-17  Score=159.91  Aligned_cols=331  Identities=14%  Similarity=0.045  Sum_probs=193.5

Q ss_pred             HHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhC-CCC---CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCc
Q psy12303         89 AGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIG-WQG---GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSA  164 (480)
Q Consensus        89 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g-~~~---~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~  164 (480)
                      +.+.+..........|....+...+.+.+.+++.+..+ ..+   .++++|+|+++++..++.+..+             
T Consensus        25 ~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~-------------   91 (388)
T PRK08637         25 LQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVD-------------   91 (388)
T ss_pred             HHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcC-------------
Confidence            33444443333445565555556666666666554332 222   4689999999999888877654             


Q ss_pred             cCCceEEEecCCCchhHHHHHH-HcCCCCCCeEEeeCC-CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC
Q psy12303        165 IKGQLVMFTSDQCHYSVRSCAA-VCGLGTDNCVEVPSD-KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP  242 (480)
Q Consensus       165 ~~g~~~vl~~~~~h~s~~~~~~-~~g~~~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~  242 (480)
                       ||+ .|++..++|+.+...+. ..|.   +++.+|.. +++.+|+++++++++....  ....++++++++||||.+.+
T Consensus        92 -~gd-~Vlv~~P~y~~~~~~~~~~~g~---~vv~v~~~~~~~~~d~~~l~~~~~~~~~--~~~~~~~~~~P~NPTG~~~s  164 (388)
T PRK08637         92 -QGD-TVLLPDHNWGNYKLTFNTRRGA---EIVTYPIFDEDGGFDTDALKEALQAAYN--KGKVIVILNFPNNPTGYTPT  164 (388)
T ss_pred             -CCC-EEEEcCCCCccHHHHHHHhcCC---EEEEecccCCCCcCCHHHHHHHHHhhcc--CCCEEEEEeCCCCCCCCCCC
Confidence             556 78899999998887654 5677   78889883 5567899999998872211  12567888899999999866


Q ss_pred             ---hHHHHHHHHH-----cCcEEEeeccccccccccccccC--cccCCC-CCCccc-eeCccccCC-CcccceEEEEeC-
Q psy12303        243 ---IEEIADICQK-----YNMWLHVDAAWGGGLLLSKKYRH--PRLTGI-ERADSV-TWNPHKLMG-TLLQCSTIHFKQ-  308 (480)
Q Consensus       243 ---l~~I~~i~~~-----~~~~l~vD~a~~~~~~~~~~~~~--~~~~~~-~~~D~~-~~s~hK~~~-~p~~~g~~~~~~-  308 (480)
                         +++|+++|++     |++++++|++|............  ..+.+. +++-.+ +.++.|.++ .+..+|++++.. 
T Consensus       165 ~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~  244 (388)
T PRK08637        165 EKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTK  244 (388)
T ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccc
Confidence               5677777765     89999999999876542211100  011111 122122 237888654 447899998753 


Q ss_pred             ----chhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHH----HHHHHHHHHHHHHHHH
Q psy12303        309 ----DGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGF----EKQIDRLMELAEYMVK  380 (480)
Q Consensus       309 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~----~~~~~~~~~l~~~l~~  380 (480)
                          +.+.+...............                 ....+...++...+....+    ++......+..+.+.+
T Consensus       245 ~~~~~~l~~~~~~~~~~~~~~~~~-----------------~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~  307 (388)
T PRK08637        245 AGSSQTVKEALEKKVKGLIRSNIS-----------------NGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKE  307 (388)
T ss_pred             cCCcHHHHHHHHHHHHHHhhcccC-----------------CCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                33333321100000000000                 0122233333333322223    2233344455556667


Q ss_pred             HHhcCC---CCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCCcccEEEEec
Q psy12303        381 KIKSMP---DKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLNDLPNFFRNII  456 (480)
Q Consensus       381 ~l~~~~---~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~~~~~~R~~~  456 (480)
                      .|++ .   +++.+. +|..+.++|...+ .            .+  ..++.+.+. +.|+.+...    + .+++|+++
T Consensus       308 ~l~~-~~~~~~~~~~-~~~~g~~~~~~l~-~------------~~--~~~l~~~l~~~~gv~~~~~----~-~~~iRi~~  365 (388)
T PRK08637        308 VLYD-GKYDDAWQAY-PFNSGYFMCLKLK-G------------VD--AEELRVHLLEKYGIGTIAL----N-ETDLRIAF  365 (388)
T ss_pred             HHHh-hCCCCCcccc-cccceEEEEecCC-h------------HH--HHHHHHHHhhhcceEEEec----c-CCceEEEe
Confidence            7766 3   256653 5666666653222 1            00  235667775 456544321    3 46899995


Q ss_pred             ccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        457 SSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       457 ~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      ..  .++++++..+++|.++++.|
T Consensus       366 ~~--~~~~~i~~~~~~l~~~~~~~  387 (388)
T PRK08637        366 SC--VEEEDIPELFDSIYKAIKDL  387 (388)
T ss_pred             ec--CCHHHHHHHHHHHHHHHHhc
Confidence            43  57899999999999887653

>PRK15029 arginine decarboxylase; Provisional

Probab=99.80  E-value=3.2e-17  Score=169.26  Aligned_cols=177  Identities=23%  Similarity=0.271  Sum_probs=140.1

Q ss_pred             HHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCC
Q psy12303        113 METVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGT  192 (480)
Q Consensus       113 ~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~  192 (480)
                      .-.+..+.+|++||++. .-++++|+|.+|..++.+++.              ||+ .|+++..+|-|+..++.+.|+  
T Consensus       206 ~I~eAq~~aA~~fgA~~-t~FlvNGST~gn~a~i~a~~~--------------~gd-~Vlv~RN~HKSv~~al~L~ga--  267 (755)
T PRK15029        206 AFGESEKYAARVFGADR-SWSVVVGTSGSNRTIMQACMT--------------DND-VVVVDRNCHKSIEQGLILTGA--  267 (755)
T ss_pred             HHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHHHhcC--------------CCC-EEEeecccHHHHHHHHHHcCC--
Confidence            34556788999999975 568889999999988887765              556 899999999999999999998  


Q ss_pred             CCeEEeeCC--CC---CCCC-----HHHHHHHHHHHH----HCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEE
Q psy12303        193 DNCVEVPSD--KR---GRLI-----PSELERLVLERK----AKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLH  258 (480)
Q Consensus       193 ~~v~~v~~~--~~---~~~d-----~~~L~~~i~~~~----~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~  258 (480)
                       ..++++..  ..   +.++     ++.++++|++..    ..+.+|++|++|+| |..|.+.++++|+++|++++++|+
T Consensus       268 -~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P-TY~Gv~~di~~I~~~~h~~~~~ll  345 (755)
T PRK15029        268 -KPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLH  345 (755)
T ss_pred             -eEEEecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECC-CCcceeeCHHHHHHHHHhcCCeEE
Confidence             55666433  21   3455     999999997642    13456779999999 678999999999999999999999


Q ss_pred             eeccccccccccccccC-cccC----CCCCCc-cceeCccccCCCcccceEEEEeCc
Q psy12303        259 VDAAWGGGLLLSKKYRH-PRLT----GIERAD-SVTWNPHKLMGTLLQCSTIHFKQD  309 (480)
Q Consensus       259 vD~a~~~~~~~~~~~~~-~~~~----~~~~~D-~~~~s~hK~~~~p~~~g~~~~~~~  309 (480)
                      ||+|||+...+.+.++. ..+.    .-.++| +++-|.||.+.+-...+++.+++.
T Consensus       346 vDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~  402 (755)
T PRK15029        346 FDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREG  402 (755)
T ss_pred             EECccccccccCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCC
Confidence            99999998877765531 1221    113788 888899999998888999998665

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.80  E-value=2.9e-16  Score=155.63  Aligned_cols=308  Identities=10%  Similarity=0.056  Sum_probs=191.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      .+...++.+.+++++..+...+.|+++|||||..|++.||...    ..+|.     ..+|......|.....+....+.
T Consensus       116 ~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t----~~~gr-----~~ii~~~~~yHG~t~~~ls~t~~  186 (442)
T TIGR03372       116 DPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQ----SPRGK-----FTFIAASGAFHGKSLGALSATAK  186 (442)
T ss_pred             CHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHH----hhcCC-----cEEEEECCCccCCCHHHhhccCC
Confidence            3445567788888875433468999999999999999998741    11121     22455555667766665554331


Q ss_pred             C---------CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEE
Q psy12303        191 G---------TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWL  257 (480)
Q Consensus       191 ~---------~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l  257 (480)
                      .         ...+..+|.+     |.+++++.+++....+..+++|+++......|.+.|    ++++.++|++||+.+
T Consensus       187 ~~~~~~~~p~~~~~~~~p~~-----d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~ll  261 (442)
T TIGR03372       187 PAFRKPFMPLLPGFHHVAFG-----DIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALL  261 (442)
T ss_pred             cccCCCCCCCCCCCEEeCCC-----CHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence            1         1123445544     678888888664444556899999999999899887    999999999999999


Q ss_pred             EeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccCC
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDT  336 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  336 (480)
                      ++|+++.|+......+.. ...++ .+|+++  +.|.++++ .++|+++.+ +++.....  ..++....          
T Consensus       262 I~DEV~tG~GRtG~~~a~-e~~gv-~PDivt--~gK~lg~G~~Pigavv~~-~~i~~~~~--~~~~~~~~----------  324 (442)
T TIGR03372       262 ILDEVQTGMGRTGKMFAC-EHEGV-QPDILC--LAKALGGGVMPIGATIAT-EAVFSVLF--DNPFLHTT----------  324 (442)
T ss_pred             EEeecccCCCccccchhh-hhcCC-CCCeee--ehhhhcCCcccceEEEec-HHHHHhhh--ccCccccC----------
Confidence            999999875444433333 34455 689888  67999877 478888875 34433321  11111110          


Q ss_pred             CCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CC-CeEEecCCceeEEEEEeecCccCCC
Q psy12303        337 GDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PD-KFYLILEPEMVNVSFWYLPTRVRNM  412 (480)
Q Consensus       337 ~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~-g~~~~~~~~~~~v~f~~~~~~~~~~  412 (480)
                       ++   .+.+....+..++|+.+-.+   ++.++..++.++|.+.|++.   .| .+.-+ ...+.++.+.+....    
T Consensus       325 -T~---~gnp~~~Aaa~a~L~~i~~~---~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~v-RG~Gl~~giel~~~~----  392 (442)
T TIGR03372       325 -TF---GGNPLACAAALATINELLEK---NLPAQAAIKGDFLLDGFQQLAAEYPDLIIEA-RGKGLLMAIEFRDNE----  392 (442)
T ss_pred             -CC---CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHhCCCceEEE-ecceEEEEEEeCChH----
Confidence             00   11222333344445444333   34566667777777776651   23 12111 122333333332110    


Q ss_pred             chhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        413 PHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       413 ~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                                 ....+.+.+.++|.++ .... .+ .+.+|+. ++..+|++|||++++++++.
T Consensus       393 -----------~~~~i~~~l~~~Gvl~-~~~~-~~-~~~lr~~-Ppl~~t~~~id~~~~~l~~~  441 (442)
T TIGR03372       393 -----------IGYAFAKELFQQNILV-AGTL-NN-AKSIRIE-PPLTITIEQCALVIKAAKDA  441 (442)
T ss_pred             -----------HHHHHHHHHHHCCcEE-eecC-CC-CCEEEEE-CCcccCHHHHHHHHHHHHHh
Confidence                       1246778888888554 3211 12 4689999 99999999999999999875

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.80  E-value=2.7e-17  Score=160.92  Aligned_cols=218  Identities=13%  Similarity=0.131  Sum_probs=152.4

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHH---
Q psy12303        107 APVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS---  183 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~---  183 (480)
                      .|....+|    +.++++.|.+.  .+++++|+.|+..++ .+..              ||+ +|+++...|.+...   
T Consensus        49 ~p~~~~Le----~~la~l~g~~~--al~~~SG~~Al~~~l-~~l~--------------pGd-~Vi~~~~~y~~t~~~~~  106 (380)
T PRK06176         49 NPTRFALE----ELIADLEGGVK--GFAFASGLAGIHAVF-SLFQ--------------SGD-HVLLGDDVYGGTFRLFD  106 (380)
T ss_pred             ChhHHHHH----HHHHHHhCCCC--EEEECCHHHHHHHHH-HHcC--------------CCC-EEEEcCCChhHHHHHHH
Confidence            34444444    55888888765  577788888887544 3322              556 77777777765543   


Q ss_pred             -HHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecc
Q psy12303        184 -CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAA  262 (480)
Q Consensus       184 -~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a  262 (480)
                       .+...|+   ++.+++.+     |+++++++++++      +++|++++++|++|.+.|+++|.++|+++|+++++|++
T Consensus       107 ~~~~~~gi---~v~~vd~~-----d~e~l~~ai~~~------t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t  172 (380)
T PRK06176        107 KVLVKNGL---SCTIIDTS-----DLSQIKKAIKPN------TKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNT  172 (380)
T ss_pred             HHHHhcCe---EEEEcCCC-----CHHHHHHhcCcC------ceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECC
Confidence             3344455   66666653     899999988765      89999999999999999999999999999999999999


Q ss_pred             ccccccccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcc
Q psy12303        263 WGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKV  340 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  340 (480)
                      |+.+....+ ..+       ++|+++.|++|++++|..  .|+++.+++.+........ ..                  
T Consensus       173 ~a~~~~~~p-~~~-------gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~-~~------------------  225 (380)
T PRK06176        173 FATPYYQNP-LLL-------GADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQ-NA------------------  225 (380)
T ss_pred             ccccccCCc-ccc-------CCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHH-HH------------------
Confidence            987543222 233       899999999999998753  5656655554433221100 00                  


Q ss_pred             ccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        341 IQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       341 ~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                        .+........|..++  |.+.+..+.++..+++..+.+.|++ .|.+.-+
T Consensus       226 --~G~~~~~~~~~l~~~--gl~tl~~R~~~~~~~a~~la~~L~~-~p~v~~v  272 (380)
T PRK06176        226 --IGGVLGPQDSWLLQR--GIKTLGLRMEAHQKNALCVAEFLEK-HPKVEKV  272 (380)
T ss_pred             --hcCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHh-CCCeeEE
Confidence              111123345565543  4566778888889999999999999 8887644

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.80  E-value=8.2e-17  Score=150.07  Aligned_cols=365  Identities=13%  Similarity=0.067  Sum_probs=235.9

Q ss_pred             CCCCHHHHHHHHHhhccCCccCCCCCccccccCCCChHHhHH-HHHHH--HcCc-CCcchhcChhhHHHHHHHHHHHHHH
Q psy12303         49 KGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAG-EWLIA--TANT-NMFTYEIAPVFILMETVVLEKMRQI  124 (480)
Q Consensus        49 ~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~l~~--~~~~-~~~~~~~~~~~~~~e~~~~~~la~~  124 (480)
                      .+.+..++++.++++...+.  ..+.|++...-+...|+++. .++..  ++.. .++..+.|.+.-+.--+....++++
T Consensus        55 ~~~sE~e~l~~l~~ia~kN~--~~~sfiG~GyY~~~~P~vI~rnile~pewyTaYTPYQpEISQGrLqaLfefQtlv~dL  132 (450)
T COG0403          55 KPLSEYEALAELKEIASKNK--VFTSFIGAGYYDTYTPPVILRNILENPEWYTAYTPYQPEISQGRLEALFEFQTLVADL  132 (450)
T ss_pred             CCCCHHHHHHHHHHHHhcCc--hhhhhccCcccCCcCcHHHHHHhhcCccccccCCCCchhhhhHHHHHHHHHHHHHHHH
Confidence            46699999999999887665  44556665444444444443 44442  2221 1244455666555556678999999


Q ss_pred             hCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHc--CCCCCCeEEeeCCC
Q psy12303        125 IGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVC--GLGTDNCVEVPSDK  202 (480)
Q Consensus       125 ~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~--g~~~~~v~~v~~~~  202 (480)
                      .|.+-.+..+..++|.+-..++++-|..+       .    + +.+++++...|+.....++..  +.|. +++.++.+ 
T Consensus       133 TGm~VANASm~DeaTAaAEAm~ma~r~~k-------~----k-~~~~~V~~~vhpqt~~Vl~Tra~~~g~-~i~~~~~~-  198 (450)
T COG0403         133 TGLDVANASMLDEATAAAEAMLMAKRVTK-------K----K-RNKFLVPKDVHPQTLDVLRTRAEGLGI-EIEVVDAD-  198 (450)
T ss_pred             hCCCcccchhhhhHHHHHHHHHHHHHhhc-------C----c-CceEEecCCCCHHHHHHHHhhcccCce-EEEEeccc-
Confidence            99999999999999987776666655431       0    1 238999999999998888765  3322 66666655 


Q ss_pred             CCCCCHHHHHHHHHH-HHHCCCccEEEEeccCCCccc-cccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCC
Q psy12303        203 RGRLIPSELERLVLE-RKAKGDIPFFVNCTSGTTVLG-AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTG  280 (480)
Q Consensus       203 ~~~~d~~~L~~~i~~-~~~~~~~~~~v~~~~~~~~~G-~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~  280 (480)
                          |.++|+++ ++ +      +++|++..|+ ..| ...++.+|.+.++++|+.++|=.---...+.-+...+     
T Consensus       199 ----d~~~l~~~-~~~~------~~gv~vQyP~-~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~-----  261 (450)
T COG0403         199 ----DLDDLESA-DDGD------VFGVLVQYPN-TFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGEF-----  261 (450)
T ss_pred             ----hhhhhhhc-cccC------eEEEEEecCC-CCCccchhHHHHHHHHhhcCCEEEEEechhHhhccCCcccc-----
Confidence                78888887 43 3      8999999995 567 6678999999999999988775422222233333344     


Q ss_pred             CCCCccceeCccccCC----CcccceEEEEeCchhhHhhhcCCcccccccccccCc---------------ccCCCCccc
Q psy12303        281 IERADSVTWNPHKLMG----TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDV---------------RYDTGDKVI  341 (480)
Q Consensus       281 ~~~~D~~~~s~hK~~~----~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------~~~~~~~~~  341 (480)
                        ++|+++.+.+.++-    +++.+|++-++++- .    ...|+.+.+......+               +.+--+.++
T Consensus       262 --GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~-~----R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNI  334 (450)
T COG0403         262 --GADIVVGSAQRFGVPMGFGGPHAGYFAVKDEF-K----RQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNI  334 (450)
T ss_pred             --CCceEEecCcccCCCcCCCCcceeeeeEhHhH-h----hcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhh
Confidence              99999999997743    22346777776542 2    2345544443221111               111111111


Q ss_pred             cCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC-CCeEEecCCceeEEEEEeecCccCCCchhhHHH
Q psy12303        342 QCGRH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP-DKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLN  419 (480)
Q Consensus       342 ~~~r~-~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~-~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~  419 (480)
                       |+.. ..++.+.+.+..+|.+|++++.++.++++.++.+.|++ . .|++++.+..+..++++... .           
T Consensus       335 -CTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~-~~~g~~~~~~~fFdt~~v~~~~-~-----------  400 (450)
T COG0403         335 -CTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKE-IGAGVELVFDHFFDTFTVRVPE-E-----------  400 (450)
T ss_pred             -hHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhh-cCCceEeccccceeeEEEecch-h-----------
Confidence             1111 12333334455679999999999999999999999996 3 47998867666667665321 1           


Q ss_pred             HhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        420 ILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       420 ~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                          ....+..+....|.-+-.   ..  ...+-++ ....+|++||+.+++.+....
T Consensus       401 ----~~~~l~~~~~~~G~~L~~---~~--~~~~~ia-~tEt~t~~~i~~l~~~~~~~~  448 (450)
T COG0403         401 ----VAEALLAAAIAGGINLRR---VD--ADTVLIA-LTETTTKEDIDALVAAFGGVN  448 (450)
T ss_pred             ----HHHHHHHHHHhcCCceee---ec--CCceEEE-eecccCHHHHHHHHHHHhhhc
Confidence                123455555566632211   11  2356677 778899999999999987643

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.80  E-value=1.5e-16  Score=158.85  Aligned_cols=311  Identities=12%  Similarity=0.095  Sum_probs=194.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      .....++.+.+++++..+...+.|+++||+|+..|++.||...    ..+|.     ..+|......|.....+....+.
T Consensus       123 ~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t----~~~gr-----~~ii~~~~~yHG~t~~~ls~~~~  193 (459)
T PRK11522        123 DPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQ----SPRGK-----FTFIATSGAFHGKSLGALSATAK  193 (459)
T ss_pred             CHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHh----ccCCC-----cEEEEecCCCCCCcHHHhhhcCC
Confidence            4455567777888765433569999999999999999998751    11111     22444555567666555555442


Q ss_pred             CC---------CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEE
Q psy12303        191 GT---------DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWL  257 (480)
Q Consensus       191 ~~---------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l  257 (480)
                      ..         ..+..+|.+     |.+++++.+++....+..+++|+++..+...|.+.|    ++++.++|++||+.+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~ll  268 (459)
T PRK11522        194 STFRKPFMPLLPGFRHVPFG-----NIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALL  268 (459)
T ss_pred             cccccCCCCCCCCCcccCCC-----CHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence            11         112233332     788899988765444556889999999999999877    999999999999999


Q ss_pred             EeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccCC
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDT  336 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  336 (480)
                      ++|+++.|+......+.. ...|+ ..|+++  +.|.++++ .++|+++.++ +.......  .++....          
T Consensus       269 I~DEV~tG~GRtG~~~a~-e~~gv-~PDivt--~gK~lggG~~Pigav~~~~-~i~~~~~~--~~~~~~~----------  331 (459)
T PRK11522        269 ILDEVQTGMGRTGKMFAC-EHENV-QPDILC--LAKALGGGVMPIGATIATE-EVFSVLFD--NPFLHTT----------  331 (459)
T ss_pred             EeccceecCCccchhhhh-hccCC-CCCEEE--echhhhCCCccceeEEEcH-HHHHHhcc--CCcccCC----------
Confidence            999999875444433333 34455 689887  57999877 4789888764 33332211  1111110          


Q ss_pred             CCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC-CeE-EecC--CceeEEEEEeecCccCCC
Q psy12303        337 GDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD-KFY-LILE--PEMVNVSFWYLPTRVRNM  412 (480)
Q Consensus       337 ~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~-g~~-~~~~--~~~~~v~f~~~~~~~~~~  412 (480)
                         ++ .+.+....++.++|+.+-.+   ...++..++.++|.+.|++ +. ++. ++..  -.+.++.+.+....    
T Consensus       332 ---T~-~gnp~~~Aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~-l~~~~~~~i~~VrG~Gl~~giel~~~~----  399 (459)
T PRK11522        332 ---TF-GGNPLACAAALATINVLLEQ---NLPAQAEQKGDYLLDGFRQ-LAREYPDLVQEARGKGMLMAIEFVDNE----  399 (459)
T ss_pred             ---CC-CCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHH-HHHhCCCceeeEEeceeEEEEEecCch----
Confidence               00 11222333444555554333   4567888888888888876 31 121 1111  12233333332110    


Q ss_pred             chhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        413 PHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       413 ~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                                 ....+.+.+.++|.++ .... .+ .+.+|++ ++..+|++||+++++++++.+++
T Consensus       400 -----------~~~~i~~~l~~~Gvl~-~~~~-~~-~~~lr~~-Ppl~~t~~~id~~l~~l~~~l~~  451 (459)
T PRK11522        400 -----------IGYNFASEMFRQRVLV-AGTL-NN-AKTIRIE-PPLTLTIEQCEQVLKAARKALAA  451 (459)
T ss_pred             -----------HHHHHHHHHHHCCeEE-EecC-CC-CCEEEEE-CCccCCHHHHHHHHHHHHHHHHH
Confidence                       1245778888888544 3322 22 4799999 99999999999999999887653

>PLN02624 ornithine-delta-aminotransferase

Probab=99.79  E-value=2.1e-16  Score=159.15  Aligned_cols=309  Identities=13%  Similarity=0.100  Sum_probs=182.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCce-EEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQL-VMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~-~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .....++.+.+++++|.+  .+.|+++|++||..|++.++....   ..+|..  +++. .|......|.....+....+
T Consensus       116 ~~~~~~la~~L~~~~~~~--~~~f~~SGseA~e~AlklAr~~~~---~~~g~~--~~~~~ii~~~~~yHG~t~~~~s~~~  188 (474)
T PLN02624        116 NDKFPEFAEYLTSMFGYD--MVLPMNTGAEGVETAIKLARKWGY---EKKGIP--KNEAIIVSCCGCFHGRTLAAISMSC  188 (474)
T ss_pred             CHHHHHHHHHHHhhcCCC--eEEEeCChHHHHHHHHHHHHHHHH---hhcCCC--CCCcEEEEECCCcCCCCHHHhhcCC
Confidence            344456677788888764  599999999999999999986311   111211  1222 34444445655444444332


Q ss_pred             CC---------CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcE
Q psy12303        190 LG---------TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMW  256 (480)
Q Consensus       190 ~~---------~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~  256 (480)
                      -.         ...+..+|.+     |++.|++.++.   .+..+++|+++.+++++|.+.|    +++|.++|++||++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~---~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gil  260 (474)
T PLN02624        189 DNEATRGFGPLLPGHLKVDFG-----DLDALEKIFEE---DGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVL  260 (474)
T ss_pred             CccccccCCCCCCCceEeCCC-----CHHHHHHHHHh---CCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence            11         0123444443     78899988863   2345899999999999999877    99999999999999


Q ss_pred             EEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccC
Q psy12303        257 LHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYD  335 (480)
Q Consensus       257 l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  335 (480)
                      +++|++|.+.......+.. ...++ .+|++++  .|.++++ .++|+++.++ +.+.....   ... .          
T Consensus       261 lI~DEv~tG~GrtG~~~a~-~~~~i-~pDiv~l--sK~lggG~~pigav~~~~-~i~~~~~~---~~~-~----------  321 (474)
T PLN02624        261 MIADEIQTGLARTGKMLAC-DWEEV-RPDVVIL--GKALGGGVIPVSAVLADK-DVMLCIKP---GEH-G----------  321 (474)
T ss_pred             EEEeccccCcCcCcchhhH-HhcCC-CCCEEEe--cccccCCCCcceeeeecH-HHHhHhcc---CCc-C----------
Confidence            9999999864332222211 22344 5788885  5998877 5788888653 33332211   000 0          


Q ss_pred             CCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCC-eEEecCCceeEEEEEeecCccCC
Q psy12303        336 TGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDK-FYLILEPEMVNVSFWYLPTRVRN  411 (480)
Q Consensus       336 ~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g-~~~~~~~~~~~v~f~~~~~~~~~  411 (480)
                       .  ++ ++.+....++.++++.+..+   ++.++..++.++|.+.|.+.   .+. +.-+ .+...++.+.+..... +
T Consensus       322 -~--T~-~g~pl~~aaa~aaLe~l~~~---~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~v-rg~G~~~~i~l~~~~~-~  392 (474)
T PLN02624        322 -S--TF-GGNPLASAVAMAALQVVQDE---KLAERSAKLGQELRDQLQKIQKQFPKLIKEV-RGRGLLNAVVLNSPKL-G  392 (474)
T ss_pred             -C--CC-CCCHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHHhCCCceEEE-EeeEEEEEEEecCCCc-C
Confidence             0  00 11112233333444443222   23345555666666655440   232 2222 2333344333321110 0


Q ss_pred             CchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        412 MPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       412 ~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                         ..       ...++.+.|.+.|+++ .+.   + .+++|++ ++..+|++||++++++|+++++
T Consensus       393 ---~~-------~a~~~~~~L~e~GV~v-~p~---~-~~~lR~~-p~l~~t~e~id~~l~~L~~~l~  443 (474)
T PLN02624        393 ---PV-------SAYDVCLKLKERGLLA-KPT---H-DTIIRLA-PPLSISEDELQECSKALSDVLE  443 (474)
T ss_pred             ---hH-------HHHHHHHHHHhCCeEE-ecC---C-CCEEEEE-CCccCCHHHHHHHHHHHHHHHH
Confidence               00       1245677888888544 332   2 4789999 8889999999999999988764

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.79  E-value=3.3e-17  Score=158.75  Aligned_cols=349  Identities=14%  Similarity=0.163  Sum_probs=208.1

Q ss_pred             CccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhc
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKM  153 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~  153 (480)
                      -|++..+.+.+.+..-..+...  -.....|..+|.+.++|+.    +++++|.+.  ++.|++||.|+..+..+..   
T Consensus        46 v~IDLlSDS~T~aMs~~q~a~~--~vGDd~Yagd~s~~~LE~~----vAe~lG~e~--aV~v~sGTaAl~ll~~l~v---  114 (460)
T PRK13237         46 VYIDLLTDSGTNAMSDRQWAGM--MIGDEAYAGSRNFYHLEET----VQEYYGFKH--VVPTHQGRGAENLLSRIAI---  114 (460)
T ss_pred             EEEECcccCCchhccHHHHHHH--hhcchhhcCCCcHHHHHHH----HHHHHCCCe--EEEeCCHHHHHHHHHHhCC---
Confidence            3666666655533122112222  2233567788888888887    777889876  9999999999987533221   


Q ss_pred             CchhHhcCCCccCCceEEEecCCCchhHHHH-HHHcCCCCCCeEEeeC----------CCCCCCCHHHHHHHHHHHHHCC
Q psy12303        154 FPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC-AAVCGLGTDNCVEVPS----------DKRGRLIPSELERLVLERKAKG  222 (480)
Q Consensus       154 ~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~-~~~~g~~~~~v~~v~~----------~~~~~~d~~~L~~~i~~~~~~~  222 (480)
                                 .||+ +|  +..+|.....+ ....|.   ..+-+..          ..+|.+|+++|+++|++..  .
T Consensus       115 -----------~pGd-~V--p~n~~f~Tt~ahI~~~Ga---~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~--~  175 (460)
T PRK13237        115 -----------KPGQ-YV--PGNMYFTTTRYHQELNGG---IFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVG--A  175 (460)
T ss_pred             -----------CCcC-EE--CCccchHhhHHHHHhCCc---EEEeeecccccccccCCCCCCCcCHHHHHHHhcccc--C
Confidence                       1556 44  66778777666 555554   2332321          2368999999999998542  1


Q ss_pred             CccEEEEeccCCCcc-ccc---cChHHHHHHHHHcCcEEEeecccccccc-ccc----cccCccc-----CCCCCCccce
Q psy12303        223 DIPFFVNCTSGTTVL-GAF---DPIEEIADICQKYNMWLHVDAAWGGGLL-LSK----KYRHPRL-----TGIERADSVT  288 (480)
Q Consensus       223 ~~~~~v~~~~~~~~~-G~~---~~l~~I~~i~~~~~~~l~vD~a~~~~~~-~~~----~~~~~~~-----~~~~~~D~~~  288 (480)
                      .++.+|.++..+|.. |..   .++++|.++|++||+++|.|+|+..+.. ++.    .+....+     .-...+|.++
T Consensus       176 ~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t  255 (460)
T PRK13237        176 ENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCT  255 (460)
T ss_pred             CccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEE
Confidence            235567777777777 444   4789999999999999999999987733 221    1111000     1124789999


Q ss_pred             eCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHH
Q psy12303        289 WNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQI  368 (480)
Q Consensus       289 ~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~  368 (480)
                      +|+||.+.+|. .|+++++++++.+.+......|-.-        ..++..   .+|...++  ..++...-.   .+++
T Consensus       256 ~S~~K~~~~~~-GG~i~t~D~eL~~~~r~~~~~~eG~--------~tygg~---~grd~~al--Avgl~E~~~---~~y~  318 (460)
T PRK13237        256 MSGKKDCLVNI-GGFLAMNDEELFDEAKELVVVYEGM--------PSYGGM---AGRDMEAM--AIGIEESVQ---YEYI  318 (460)
T ss_pred             EeCCCCCCCCC-ceEEEECCHHHHHHHHHhccccCCC--------cCCCCh---hhhHHHHH--HhHHHhhch---HHHH
Confidence            99999999866 5888889988777665443322100        001100   12222222  223332111   2667


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh-ccc-------EEE
Q psy12303        369 DRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGT-------MMV  440 (480)
Q Consensus       369 ~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~-------~~~  440 (480)
                      ++..+.+++|.+.|.+  .|+.++. |..+.-+|..-..-+...+..+    +-  ...+...|.. .|+       +..
T Consensus       319 ~~ri~~~~~l~~~L~~--~Gvpv~~-p~ggH~v~vda~~~lph~~~~~----~p--~~al~~~ly~~~GiR~~e~g~~~~  389 (460)
T PRK13237        319 EHRVGQVRYLGEKLLA--AGVPIVE-PVGGHAVFLDARRFLPHLPQDQ----FP--AQALAAELYIESGVRSMERGIVSA  389 (460)
T ss_pred             HHHHHHHHHHHHHHHH--CCCceec-CCCceEEEEEhHHhCCCCCccc----Ch--HHHHHHHHHHHhCcCeEeecceec
Confidence            7888899999999999  7999985 4444444421110000000001    10  1223333322 332       222


Q ss_pred             eeeeeCCc-----ccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        441 GYQPLNDL-----PNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       441 ~~~~~~~~-----~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      ...+..+.     -..+|++++-..-|.+++|+++++|..+.+
T Consensus       390 ~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~  432 (460)
T PRK13237        390 GRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYK  432 (460)
T ss_pred             ccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHH
Confidence            21111111     257999988888899999999999988765

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.79  E-value=1.5e-16  Score=158.10  Aligned_cols=309  Identities=11%  Similarity=-0.008  Sum_probs=182.4

Q ss_pred             chhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH
Q psy12303        103 TYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR  182 (480)
Q Consensus       103 ~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~  182 (480)
                      .|...++...+.+++++++.+. +++++++++|+|+++++...+ .+..              ||+ .|++..++|+.+.
T Consensus        70 ~Y~p~~g~~~lr~aia~~~~~~-~~~~d~I~it~Ga~~al~~l~-~l~~--------------~gd-~Vlv~~P~y~~~~  132 (402)
T TIGR03542        70 GYGPEQGYPFLREAIAENDYRG-RIDPEEIFISDGAKCDVFRLQ-SLFG--------------SDN-TVAVQDPVYPAYV  132 (402)
T ss_pred             CCCCCCCCHHHHHHHHHHHHhc-CCCHHHEEECCCcHHHHHHHH-HhcC--------------CCC-EEEEeCCCCcchH
Confidence            3544455566666655553221 577789999999999887643 3322              445 7888889999999


Q ss_pred             HHHHHcCCCCC--------CeEEeeCCCC--CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHH
Q psy12303        183 SCAAVCGLGTD--------NCVEVPSDKR--GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADI  249 (480)
Q Consensus       183 ~~~~~~g~~~~--------~v~~v~~~~~--~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i  249 (480)
                      ..++..|+.+.        .++.+|.+++  +..|++   +.        .++++|++++++||||.+.+   +++|.++
T Consensus       133 ~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~--------~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~  201 (402)
T TIGR03542       133 DSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLP---EE--------PKIDIIYLCSPNNPTGTVLTKEQLKELVDY  201 (402)
T ss_pred             HHHHHcCCccccccccccceEEEeecchhhCCCCCcc---cc--------CCceEEEEeCCCCCCCccCCHHHHHHHHHH
Confidence            99998887211        5667777643  333321   10        13789999999999999977   7889999


Q ss_pred             HHHcCcEEEeeccccccccccccccCcccCCCCC---CccceeCccccCC-CcccceEEEEeCchhhHhh-hcCCccccc
Q psy12303        250 CQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIER---ADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISC-NQMSAEYLF  324 (480)
Q Consensus       250 ~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~---~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~-~~~~~~~l~  324 (480)
                      |++||+++++|++|..+...... .. .+..+..   .-+++.|++|.++ .+..+|++++... ++... ......+..
T Consensus       202 a~~~~~~iI~De~y~~~~~~~~~-~~-~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i~~~~-l~~~~~~~~~~~~~~  278 (402)
T TIGR03542       202 ANEHGSLILFDAAYSAFISDPSL-PH-SIFEIPGAKECAIEFRSFSKTAGFTGVRLGWTVVPKE-LTYADGHSVIQDWER  278 (402)
T ss_pred             HHHcCeEEEEEchhhhhccCCCC-Cc-chhhCCCCcccEEEEecCccccCCCCcceEEEEecHH-HhhcchhhHHHHHHH
Confidence            99999999999999876431110 11 1111211   2245679999996 4478999887543 32000 000000000


Q ss_pred             ccccccCcccCCCCccccCCCCCCchHHHHHHHHh---cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEE
Q psy12303        325 MQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK---GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVS  401 (480)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~---g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~  401 (480)
                      .....              ......+...++...+   +...+.+.++...+..+.+.+.|++ . ++++. ++..+.+.
T Consensus       279 ~~~~~--------------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~-~~~~~~f~  341 (402)
T TIGR03542       279 RQCTK--------------FNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEA-A-GFKVY-GGEHAPYL  341 (402)
T ss_pred             Hhhhc--------------ccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHh-c-Cceec-CCCceeEE
Confidence            00000              0001122222222222   1233555666777888889999998 4 77764 44455454


Q ss_pred             EEeecCccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        402 FWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       402 f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      |.-.+....              ..++.+.+.+ .|+.+.....+.. ..+++|+++.   .++++++..++.|++.
T Consensus       342 ~v~l~~~~~--------------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~---~~~~~l~~~l~~l~~~  401 (402)
T TIGR03542       342 WVKTPEGIS--------------SWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAF---GKRENIVEACERIKEA  401 (402)
T ss_pred             EEECCCCCC--------------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec---CCHHHHHHHHHHHHhh
Confidence            433332211              1356677664 5654443322221 1479999943   2789999999998765

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK05939 hypothetical protein; Provisional

Probab=99.79  E-value=1.4e-17  Score=163.63  Aligned_cols=240  Identities=12%  Similarity=0.043  Sum_probs=158.8

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH---
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR---  182 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~---  182 (480)
                      ..|....+|++    ++++.|...  .+.+++|+.|+..++.+...              ||+ .|+++...|++..   
T Consensus        45 g~p~~~~lE~~----la~leg~~~--~v~~ssG~~Ai~~~l~all~--------------~Gd-~Vv~~~~~y~~t~~~~  103 (397)
T PRK05939         45 GTPTTAALEAK----ITKMEGGVG--TVCFATGMAAIAAVFLTLLR--------------AGD-HLVSSQFLFGNTNSLF  103 (397)
T ss_pred             CCHHHHHHHHH----HHHHhCCCe--EEEeCCHHHHHHHHHHHHcC--------------CCC-EEEECCCccccHHHHH
Confidence            45666666666    788888865  67777789999888877643              556 6777877776543   


Q ss_pred             HHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecc
Q psy12303        183 SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAA  262 (480)
Q Consensus       183 ~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a  262 (480)
                      ..+...|+   +++.++..     |+++++++++++      |++|++++++|++|.+.|+++|+++|+++|+++++|++
T Consensus       104 ~~l~~~G~---~v~~v~~~-----d~e~l~~~l~~~------tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t  169 (397)
T PRK05939        104 GTLRGLGV---EVTMVDAT-----DVQNVAAAIRPN------TRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNT  169 (397)
T ss_pred             HHHHhcCC---EEEEECCC-----CHHHHHHhCCCC------CeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECC
Confidence            34555566   78888764     899999998765      89999999999999999999999999999999999999


Q ss_pred             ccccccccccccCcccCCCCCCccceeCccccCCCccc-ceEEEEeCchhhH-hhhcCCcccccccccccCcccCCC-Cc
Q psy12303        263 WGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ-CSTIHFKQDGLLI-SCNQMSAEYLFMQDKLYDVRYDTG-DK  339 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~-~g~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~-~~  339 (480)
                      |+.+.. .+....       ++|+++.|++|+++++.. .|++++.+...-. ........|.......+. ..... ..
T Consensus       170 ~a~~~~-~~~~~~-------gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  240 (397)
T PRK05939        170 MTSPWL-FRPKDV-------GASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWG-LTQIRKKG  240 (397)
T ss_pred             cccccc-cCcccc-------CCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHH-HHHHHHHH
Confidence            976643 222233       799999999999997532 3555543221100 000000000000000000 00000 00


Q ss_pred             cccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        340 VIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       340 ~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      ....|....+..+|+.++  |.+.+..+++++.+++..+.+.|++ +|.+.-+
T Consensus       241 ~~~~G~~~~p~~a~l~~r--gl~tl~~R~~~~~~na~~la~~L~~-~p~V~~V  290 (397)
T PRK05939        241 LRDMGATLSSEAAHRIAI--GAETLALRVDRSCSNALALAQFLEA-HPKVARV  290 (397)
T ss_pred             HHhcCCCCCHHHHHHHHc--CcCcHHHHHHHHHHHHHHHHHHHHh-CCCccEE
Confidence            001222345566776654  5778889999999999999999999 8877533

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.79  E-value=5.8e-17  Score=156.51  Aligned_cols=321  Identities=11%  Similarity=0.039  Sum_probs=202.8

Q ss_pred             hcChhhHHHHHHHHHHHHHHhCCCC-CC-eEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhH-
Q psy12303        105 EIAPVFILMETVVLEKMRQIIGWQG-GD-SILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV-  181 (480)
Q Consensus       105 ~~~~~~~~~e~~~~~~la~~~g~~~-~~-~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~-  181 (480)
                      ..+|.+.++-.++.+.+.++++.+. .. .+++.|||.++..++......             +|+ .+++..  .++- 
T Consensus        32 HRs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~-------------~g~-~vLv~g--~FG~r   95 (374)
T TIGR01365        32 HRSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGC-------------RGV-DVLAWE--SFGKG   95 (374)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCC-------------CCC-eEEEEC--HHHHH
Confidence            3478889999999999999999864 23 567999999888888766431             334 444443  4443 


Q ss_pred             -H-HHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEe
Q psy12303        182 -R-SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHV  259 (480)
Q Consensus       182 -~-~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~v  259 (480)
                       . ..++.+|+.  ++..+..+....+|+++++.    .      . .|++++..|.||...|+++|+..+  ++..++|
T Consensus        96 ~~~eia~~~g~~--~v~~l~~~~g~~~~~~~ve~----~------~-~v~~vhnETSTGv~npv~~i~~~~--~~~lliV  160 (374)
T TIGR01365        96 WVTDVTKQLKLP--DVRVLEAEYGKLPDLKKVDF----K------N-DVVFTWNGTTSGVRVPNGDFIPAD--REGLTIC  160 (374)
T ss_pred             HHHHHHHhcCCC--CcEEEcCCCCCCCCHHHcCC----C------C-CEEEecCCCchheecccccccccc--CCCcEEE
Confidence             3 667778873  25666666666789998872    1      1 267999999999999998766432  5899999


Q ss_pred             eccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCc-----ccccccccccCccc
Q psy12303        260 DAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSA-----EYLFMQDKLYDVRY  334 (480)
Q Consensus       260 D~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~  334 (480)
                      |++-+.+..+++..         ++|++..+.+|.+++|.|.|+++++++.+.. ......     .|+...... ....
T Consensus       161 DavSs~g~~~l~~d---------~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~-~~~~~~y~~~~~~~~~~~~~-~~~~  229 (374)
T TIGR01365       161 DATSAAFAQDLDYH---------KLDVVTFSWQKVLGGEGAHGMLILSPRAVAR-LESYTPAWPLPKIFRLTKGG-KLNK  229 (374)
T ss_pred             EccchhcCCCCChh---------HCcEEEEechhccCCCCceEEEEECHHHHHH-HhhcCCCCCChhhhcccccc-chhh
Confidence            99999988766542         4799999999999999999999998775433 221111     111100000 0000


Q ss_pred             CCCCccccCCCCCCchHHHHH---HHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-C--cee-EEEEEeec
Q psy12303        335 DTGDKVIQCGRHNDIFKLWLQ---WRAKGDE-GFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-P--EMV-NVSFWYLP  406 (480)
Q Consensus       335 ~~~~~~~~~~r~~~~l~~~~~---l~~~g~~-~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~--~~~-~v~f~~~~  406 (480)
                      +....+.+.+  .....+++.   ++.+-.+ |++++.+|+.++++.+++.+++ +..++++.. +  .+. ++++.+.+
T Consensus       230 ~~~~~~t~~T--P~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~-lg~l~~~~~~~~~rS~tvt~v~~~~  306 (374)
T TIGR01365       230 KIFEGSTINT--PSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAK-NNWIHFLAETPEIRSNTSVCLKVVD  306 (374)
T ss_pred             hhhcCCCCCC--hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-CCCcccCCCChhhcCCCeEEEEeCC
Confidence            0000011111  122333333   3333344 7999999999999999999999 533777652 2  222 34454422


Q ss_pred             CccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        407 TRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       407 ~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      +.++..+.+..++ +   ..++.+.|.++|. .+..+.....+..||+. .....+.+||+.+++.|.=+
T Consensus       307 ~~~~~~~~~~~~~-~---~~~~~~~l~~~gi-~i~~G~~~~~~~~fRIg-~~G~i~~~di~~l~~~l~~~  370 (374)
T TIGR01365       307 PAIDALDEDAQAD-F---AKELISTLEKEGV-AYDIGSYRDAPSGLRIW-CGATVEKSDLECLCPWLDWA  370 (374)
T ss_pred             ccccccccchhhH-H---HHHHHHHHHHCCE-EEeccccccCCCceEEe-cCCcCCHHHHHHHHHHHHHH
Confidence            2221000000000 1   1357788888874 34432222224799999 67788999999999998644

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.79  E-value=6.7e-17  Score=157.20  Aligned_cols=214  Identities=14%  Similarity=0.141  Sum_probs=154.2

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH----HHHcCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC----AAVCGL  190 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~----~~~~g~  190 (480)
                      +.+.+.++.+-|.+.  .+++++|++|+..++.+..+              ||+ +|+++...|+++...    +...|+
T Consensus        67 ~~Le~~la~le~~~~--~v~~sSG~aAi~~~l~all~--------------~GD-~Vlv~~~~Y~~~~~l~~~~l~~~Gi  129 (395)
T PRK05967         67 DALCKAIDALEGSAG--TILVPSGLAAVTVPFLGFLS--------------PGD-HALIVDSVYYPTRHFCDTMLKRLGV  129 (395)
T ss_pred             HHHHHHHHHHhCCCC--EEEECcHHHHHHHHHHHhcC--------------CCC-EEEEccCCcHHHHHHHHHHHHhcCe
Confidence            344555777766543  67777799999988877654              667 788888888887653    355565


Q ss_pred             CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccc
Q psy12303        191 GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLS  270 (480)
Q Consensus       191 ~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~  270 (480)
                         ++..++.+     +.+.++++++++      |++|++++++|+++.+.|+++|+++|+++|++++||++|+.+... 
T Consensus       130 ---~v~~vd~~-----~~e~l~~al~~~------TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~-  194 (395)
T PRK05967        130 ---EVEYYDPE-----IGAGIAKLMRPN------TKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYF-  194 (395)
T ss_pred             ---EEEEeCCC-----CHHHHHHhcCcC------ceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCceec-
Confidence               77777543     457788888765      899999999999999999999999999999999999999876443 


Q ss_pred             ccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCC
Q psy12303        271 KKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHND  348 (480)
Q Consensus       271 ~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~  348 (480)
                      ....+       ++|+++.|..|++++...  .|++ +.++........    +. .                ..|....
T Consensus       195 ~pl~~-------GaDivv~S~tKy~~Gh~d~~~G~v-~~~~~~~~~l~~----~~-~----------------~~G~~~~  245 (395)
T PRK05967        195 RPLDF-------GVDISIHAATKYPSGHSDILLGTV-SANEKCWPQLLE----AH-G----------------TLGLCAG  245 (395)
T ss_pred             ChhHc-------CCCEEEEecccccCCCCCeeEEEE-EcCHHHHHHHHH----HH-H----------------HcCCCCC
Confidence            33345       899999999999775322  4544 444433222210    00 0                0122245


Q ss_pred             chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        349 IFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       349 ~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      ...+|..++  |.+.+..+++++.+++..+.+.|++ +|.++-+
T Consensus       246 p~da~l~~r--gl~Tl~lR~~~~~~na~~lA~~L~~-hp~v~~V  286 (395)
T PRK05967        246 PDDTYQILR--GLRTMGIRLEHHRKSALEIARWLEG-RPDVARV  286 (395)
T ss_pred             HHHHHHHHc--CcccHHHHHHHHHHHHHHHHHHHHh-CCCCcEE
Confidence            567776655  4778888999999999999999999 8887533

>PRK06541 hypothetical protein; Provisional

Probab=99.79  E-value=4.8e-16  Score=155.58  Aligned_cols=330  Identities=13%  Similarity=0.081  Sum_probs=192.1

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCc-eEEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQ-LVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~-~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .+...++.+.++++++.+-..+.|+++||+|+..|++.||...    +..|.   +|+ .+|......|.....+....|
T Consensus        94 ~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~----~~~g~---~~r~~ii~~~~~yHG~t~~a~s~~~  166 (460)
T PRK06541         94 HPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYF----KLTGK---PGKHKVISRAIAYHGTTQGALAITG  166 (460)
T ss_pred             CHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHH----HhcCC---CCccEEEEEcCcccCcchhhhcCcC
Confidence            3445567777888765433579999999999999999998641    11222   222 245555566776666655443


Q ss_pred             CC---------CCCeEEeeCCCCCC-----CC--------HHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----h
Q psy12303        190 LG---------TDNCVEVPSDKRGR-----LI--------PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----I  243 (480)
Q Consensus       190 ~~---------~~~v~~v~~~~~~~-----~d--------~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l  243 (480)
                      ..         ...+..+|.....+     -+        ++.+++.++..  ....+++|+++..+++.|.+.|    +
T Consensus       167 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~Aavi~EPv~g~~G~~~~~~~yl  244 (460)
T PRK06541        167 LPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFE--GPDTVAAVFLEPVQNAGGCFPPPPGYF  244 (460)
T ss_pred             ChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhc--CCCCEEEEEECCccCCCCCccCCHHHH
Confidence            21         11234444332111     12        24566666531  2245788999888999999988    9


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCccc
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSAEY  322 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~  322 (480)
                      ++|.++|++||+++|+|+++.++......+.. ...++ ..|+++  +.|.+++++ +.|+++.+++ ...........+
T Consensus       245 ~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~-~~~gv-~PDivt--~gK~l~~G~~pigav~~~~~-i~~~~~~~~~~~  319 (460)
T PRK06541        245 ERVREICDRYDVLLVSDEVICAFGRLGEMFGC-ERFGY-VPDIIT--CAKGITSGYSPLGAMIASDR-LFEPFLDGPTMF  319 (460)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCCcCchhhhh-hhcCC-CCCEEE--ecccccCCccceeEEEEcHH-HHHHhhcCCCcc
Confidence            99999999999999999999665443333222 23455 589887  679998765 7888887544 333222111111


Q ss_pred             ccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec--CCceeEE
Q psy12303        323 LFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNV  400 (480)
Q Consensus       323 l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~--~~~~~~v  400 (480)
                      +..                 .+.....+++.+++..+..-.-....++..++.++|.+.|++ +....++.  ...+.++
T Consensus       320 ~~~-----------------~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~-l~~~~~v~~vrg~Gl~~  381 (460)
T PRK06541        320 LHG-----------------YTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEK-LLDLPIVGDVRGDGYFY  381 (460)
T ss_pred             ccC-----------------CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-hhcCCCeEEEEecceEE
Confidence            100                 011122333333333321111124567888889999988887 53222211  1333444


Q ss_pred             EEEeecCccC--CCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        401 SFWYLPTRVR--NMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       401 ~f~~~~~~~~--~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .+.+......  .... ......  ....+...+.++|.++ .+.. .+ .+.+|++ +...+|++||+++++++++.++
T Consensus       382 ~ie~~~~~~~~~~~~~-~~~~~~--~~~~~~~~l~~~Gi~~-~~~~-~g-~~~lrl~-Ppl~~t~~~id~~~~~l~~~l~  454 (460)
T PRK06541        382 GIELVKDKATKETFTD-DESERL--LRGFLSPALFEAGLYC-RADD-RG-DPVVQLA-PPLISGQEEFDEIEQILRSVLT  454 (460)
T ss_pred             EEEEecCcccccCCcc-hhhhhh--HHHHHHHHHHhCCeEE-EecC-CC-CCEEEEE-CCCCCCHHHHHHHHHHHHHHHH
Confidence            4444321100  0000 000000  1135667888888543 3311 23 4689999 8899999999999999998875


Q ss_pred             c
Q psy12303        479 D  479 (480)
Q Consensus       479 ~  479 (480)
                      +
T Consensus       455 ~  455 (460)
T PRK06541        455 E  455 (460)
T ss_pred             H
Confidence            4

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.78  E-value=1.1e-17  Score=163.63  Aligned_cols=215  Identities=13%  Similarity=0.086  Sum_probs=153.0

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH----HHHcCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC----AAVCGL  190 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~----~~~~g~  190 (480)
                      .++.+.++++.|.+.  .+++++|+.++..++ .+..              ||+ .|+++...|.+....    +...|+
T Consensus        53 ~~Le~~lA~l~g~~~--~~~~~sG~aai~~~~-~~l~--------------~Gd-~Viv~~~~y~~~~~~~~~~~~~~G~  114 (377)
T PRK07671         53 AALEELIAVLEGGHA--GFAFGSGMAAITAVM-MLFS--------------SGD-HVILTDDVYGGTYRVMTKVLNRFGI  114 (377)
T ss_pred             HHHHHHHHHHhCCCc--eEEeCCHHHHHHHHH-HHhC--------------CCC-EEEECCCccchHHHHHHHHHhcCCe
Confidence            344555899999865  577788887766544 2322              556 777888888754432    233455


Q ss_pred             CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccc
Q psy12303        191 GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLS  270 (480)
Q Consensus       191 ~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~  270 (480)
                         +++.++.+     |+++++++++++      +++|++++++|++|.+.|+++|.++|+++|+++++|++|+.+....
T Consensus       115 ---~v~~v~~~-----d~~~l~~ai~~~------tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~  180 (377)
T PRK07671        115 ---EHTFVDTS-----NLEEVEEAIRPN------TKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQS  180 (377)
T ss_pred             ---EEEEECCC-----CHHHHHHhcCCC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccCC
Confidence               67777643     899999999765      8999999999999999999999999999999999999997654322


Q ss_pred             ccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCC
Q psy12303        271 KKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHND  348 (480)
Q Consensus       271 ~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~  348 (480)
                      + ..+       ++|+++.|++|++++|.+  .|+++++++.......... .+                    .+....
T Consensus       181 p-~~~-------g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~-~~--------------------~g~~~~  231 (377)
T PRK07671        181 P-ISL-------GADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQ-NS--------------------TGGILG  231 (377)
T ss_pred             h-hhh-------CCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHH-Hh--------------------hcCCCC
Confidence            2 233       789999999999998753  5666666665544332110 01                    111134


Q ss_pred             chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        349 IFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       349 ~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                      ...+|..++.  .+.+..++++..+++..+.++|++ .|++.-+.
T Consensus       232 ~~~a~l~~~~--l~tl~~R~~~~~~na~~la~~L~~-~~~v~~v~  273 (377)
T PRK07671        232 PQDSWLLLRG--LKTLGIRMEEHETNSRAIAEFLNN-HPAVNKVY  273 (377)
T ss_pred             HHHHHHHHcC--cChHHHHHHHHHHHHHHHHHHHHc-CCCeeEEE
Confidence            5567766654  455677889999999999999999 88875543

>PRK04311 selenocysteine synthase; Provisional

Probab=99.78  E-value=3.7e-16  Score=155.08  Aligned_cols=167  Identities=17%  Similarity=0.184  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchh------HHHHHHHc
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS------VRSCAAVC  188 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s------~~~~~~~~  188 (480)
                      ..+.+.+++++|.+.  ++++++|+.|+..++.+. .              +|+ .|+++..+|++      +...+...
T Consensus       130 ~~~e~~lA~l~Gae~--a~vv~sgtaAl~l~l~~l-~--------------~Gd-eVIvs~~e~~~~ggs~~i~~~~~~~  191 (464)
T PRK04311        130 RALAALLCALTGAED--ALVVNNNAAAVLLALNAL-A--------------AGK-EVIVSRGELVEIGGAFRIPDVMRQA  191 (464)
T ss_pred             HHHHHHHHHHhCCCe--EEEECCHHHHHHHHHHHh-C--------------CCC-EEEEcchhhhhcCcchhhHHHHHHC
Confidence            367788999999874  788999999998887543 1              445 78888776663      22345566


Q ss_pred             CCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCc--cc--cccChHHHHHHHHHcCcEEEeecccc
Q psy12303        189 GLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTV--LG--AFDPIEEIADICQKYNMWLHVDAAWG  264 (480)
Q Consensus       189 g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~--~G--~~~~l~~I~~i~~~~~~~l~vD~a~~  264 (480)
                      |+   ++++++.+  ...++++++++|+++      |++|++++++|+  +|  ...|+++|+++|++||+++++|++.|
T Consensus       192 G~---~l~~v~~~--~~t~~~dle~aI~~~------TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG  260 (464)
T PRK04311        192 GA---RLVEVGTT--NRTHLRDYEQAINEN------TALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSG  260 (464)
T ss_pred             Cc---EEEEECCC--CCCCHHHHHHhcCcc------CeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCc
Confidence            76   77777654  345799999999876      899999999987  34  56799999999999999999999644


Q ss_pred             ccccccccc---cCcccCC--CCCCccceeCccccCCCcccceEEEEeCchhhH
Q psy12303        265 GGLLLSKKY---RHPRLTG--IERADSVTWNPHKLMGTLLQCSTIHFKQDGLLI  313 (480)
Q Consensus       265 ~~~~~~~~~---~~~~~~~--~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~  313 (480)
                      ... ....+   ..|.+..  -.++|++++|+|||+++|. +|+++.+ +++++
T Consensus       261 ~l~-~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~-~G~i~g~-~~li~  311 (464)
T PRK04311        261 SLV-DLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQ-AGIIVGK-KELIA  311 (464)
T ss_pred             ccc-cchhccCCCCCchhhHHhcCCcEEEecCcccccCCc-eEEEEEc-HHHHH
Confidence            321 11000   0011110  0289999999999999874 7777765 44444

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.78  E-value=1.9e-16  Score=153.05  Aligned_cols=272  Identities=12%  Similarity=0.047  Sum_probs=176.1

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      ..+++.+++.+|.+  ++++|+|+++++..++.+  .              ||+ .|++..++++.+...++.+|.   +
T Consensus        52 ~~Lr~~ia~~~~~~--~I~it~Gs~~al~~~~~~--~--------------~gd-~v~v~~P~y~~~~~~~~~~g~---~  109 (330)
T PRK05664         52 DGLEAAARAYYGAP--QLLPVAGSQAAIQALPRL--R--------------APG-RVGVLSPCYAEHAHAWRRAGH---Q  109 (330)
T ss_pred             HHHHHHHHHHhCCC--CEEECcCHHHHHHHHHHc--c--------------CCC-EEEEcCCChHHHHHHHHHcCC---e
Confidence            35677788888864  699999999988766421  1              556 789999999999999999998   7


Q ss_pred             eEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        195 CVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       195 v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                      ++.+|.+        ++++.++ .      ++++++++|+||||.+.+   +++|.++|+++++++++|++|..+.- .+
T Consensus       110 ~~~v~~~--------~~~~~~~-~------~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~-~~  173 (330)
T PRK05664        110 VRELDEA--------EVEAALD-S------LDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTP-QH  173 (330)
T ss_pred             EEEechh--------hHhhhhc-C------CCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCC-cc
Confidence            7777653        4555553 2      668899999999999977   55566667899999999999975431 11


Q ss_pred             cccCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCch
Q psy12303        272 KYRHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIF  350 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l  350 (480)
                      ...  .+..- .--+++.|++|.++ .+..+|+++. ++.+..........+.                       ...+
T Consensus       174 s~~--~~~~~-~~vi~~~SfSK~~gl~GlRiG~~v~-~~~l~~~~~~~~~~~~-----------------------~~~~  226 (330)
T PRK05664        174 SLA--ACAHR-PGLIVLRSFGKFFGLAGARLGFVLA-EPALLRALAELLGPWT-----------------------VSGP  226 (330)
T ss_pred             ccc--ccccC-CCEEEEeeccccccCCCcceEEEEe-CHHHHHHHHHhcCCCC-----------------------CCHH
Confidence            101  11110 11256779999998 5578999986 4555544332211111                       1122


Q ss_pred             HHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHH
Q psy12303        351 KLWLQWRAKG-DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILK  429 (480)
Q Consensus       351 ~~~~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~  429 (480)
                      ..+++...+. ....++..++..+.++++.+.|++ . +++.  .+...++++  .+.. .              ..++.
T Consensus       227 ~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~-~-~~~~--~~~~~~f~~--~~~~-~--------------~~~~~  285 (330)
T PRK05664        227 TRWLAQAALADTPWQRRQRERLLAASQRLAALLRR-H-GLTP--AGGCALFQW--VRTE-D--------------AAALH  285 (330)
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH-C-CCcc--cCCcceEEE--EecC-C--------------HHHHH
Confidence            2223333221 233456677777888999999998 4 5532  121223322  2111 0              23566


Q ss_pred             HHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        430 GRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       430 ~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.|.+.|+.+..+   .. .+++|+++..   ++++++++.+.|+++.++
T Consensus       286 ~~l~~~gi~v~~f---~~-~~~iRis~~~---~~~~~~~l~~al~~~~~~  328 (330)
T PRK05664        286 EFLARRGILTRLF---EQ-PASLRFGLPA---DEADWARLDQALLAYRKE  328 (330)
T ss_pred             HHHHHCCeEEEEC---CC-CCeEEEECCC---CHHHHHHHHHHHHHHHhh
Confidence            7788888665432   23 5799999432   678899999999987654

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.78  E-value=6.4e-16  Score=155.77  Aligned_cols=328  Identities=12%  Similarity=0.058  Sum_probs=192.8

Q ss_pred             HHHHHHHHHHHHHHhC-CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIG-WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g-~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      ++...++.+.|.+++. .+-..+.|+++||+||..|++++|...    ...|.++.  +.+|......|.+...++...|
T Consensus       132 ~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~----~~~g~~~r--~~iI~~~~~yHG~t~~a~slsg  205 (504)
T PLN02760        132 TKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYN----NALGRPNK--KKFIARSKSYHGSTLISASLSG  205 (504)
T ss_pred             cHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHH----HhcCCCCC--cEEEEECCCccCChHhhhhccC
Confidence            4555666777777753 233468999999999999999998641    11232111  3356666678888766665554


Q ss_pred             CCC---------CCeEEeeCCCCCCC-------------CHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----h
Q psy12303        190 LGT---------DNCVEVPSDKRGRL-------------IPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----I  243 (480)
Q Consensus       190 ~~~---------~~v~~v~~~~~~~~-------------d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l  243 (480)
                      ...         ..+..++....++.             ..++|++.+...  ....+++|+++......|.+.|    +
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~iAAvI~EPv~g~gG~~~p~~~yl  283 (504)
T PLN02760        206 LPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKE--GPETIAAFIAEPVMGAGGVIPPPATYF  283 (504)
T ss_pred             ChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhc--CCCceEEEEECCccCCCCCcCCCHHHH
Confidence            311         11233332211110             124466665421  2235889999999888899888    9


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCc--
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSA--  320 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~--  320 (480)
                      ++|.++|++||+++|+|+++.|+......+.. ...++ .+|+++  +.|.+++++ +.|+++++ +++.+.......  
T Consensus       284 ~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~-e~~gv-~PDivt--lgK~lggG~~PigAv~~~-~~i~d~~~~~~~~~  358 (504)
T PLN02760        284 EKIQAVLKKYDILFIADEVICAFGRLGTMFGC-DKYNI-KPDLVS--LAKALSSAYMPIGAVLVS-PEISDVIHSQSNKL  358 (504)
T ss_pred             HHHHHHHHHcCCEEEecchhhCCcccchhhHH-HhcCC-CCcEEE--ecccccCCccccceEeec-HHHHhhhhcccccc
Confidence            99999999999999999999776554444443 44566 589887  569998764 68887765 344433211100  


Q ss_pred             ccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC--Ccee
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE--PEMV  398 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~--~~~~  398 (480)
                      ..+.+.          .++   .+.+....++.++|+.+..   ++..++..++.++|.+.|++ +....++.+  -.+.
T Consensus       359 ~~~~h~----------~T~---~gnPl~~Aaala~Le~i~~---~~l~~~~~~~g~~l~~~L~~-l~~~~~v~~vrG~Gl  421 (504)
T PLN02760        359 GSFAHG----------FTY---SGHPVSCAVALEALKIYKE---RNIPEHVNKIAPRFQDGIKA-FSGSPIIGEIRGTGL  421 (504)
T ss_pred             cCcccC----------CCC---CCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHH-HhcCCCeeeEEeCce
Confidence            000000          000   1112233334444444322   24577888888888888876 422222221  1223


Q ss_pred             EEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        399 NVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       399 ~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      ++.+.+....... +.....   ..+...+.+.+.++|.++...      .+.+|++ +...+|++|||++++++++.++
T Consensus       422 ~~gie~~~~~~~~-~~~~~~---~~~~~~i~~~~~~~Gvl~~~~------g~~lrl~-Ppl~it~eeid~~~~~l~~al~  490 (504)
T PLN02760        422 ILGTEFVDNKSPN-DPFPAE---WGVGAYFGAECKKRGMLVRVA------GDNIMMS-PPLIITPEEVDELISIYGKALK  490 (504)
T ss_pred             EEEEEEecCCccc-ccccch---hHHHHHHHHHHHhCCcEEEec------CCEEEEE-CCCCCCHHHHHHHHHHHHHHHH
Confidence            4444443221000 000000   012356778888999654321      2578999 8899999999999999988765


Q ss_pred             c
Q psy12303        479 D  479 (480)
Q Consensus       479 ~  479 (480)
                      +
T Consensus       491 ~  491 (504)
T PLN02760        491 A  491 (504)
T ss_pred             H
Confidence            3

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.78  E-value=3.7e-16  Score=155.26  Aligned_cols=302  Identities=14%  Similarity=0.112  Sum_probs=179.0

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC----
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG----  189 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g----  189 (480)
                      ..++.+.++++.+.+  .+.|+++|++||..|++.+|....    ..+.. .+ +.+|......|.+...+....+    
T Consensus        84 ~~~l~~~l~~~~~~~--~~~~~~sGseA~e~a~klar~~~~----~~~~~-~~-~~ii~~~~~~HG~~~~~~~~~~~~~~  155 (403)
T PRK05093         84 ALRLAKKLIDATFAE--RVFFANSGAEANEAAFKLARRYAC----DRHGP-EK-TEIIAFHNSFHGRTLFTVSVGGQPKY  155 (403)
T ss_pred             HHHHHHHHHhhCCCC--EEEEeCchHHHHHHHHHHHHHHHh----hcCCC-CC-CeEEEEcCCcCCchhhhHhhcCChhh
Confidence            346667788877654  699999999999999999986421    01100 01 3366667777887765544322    


Q ss_pred             ---CC--CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEEEee
Q psy12303        190 ---LG--TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWLHVD  260 (480)
Q Consensus       190 ---~~--~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l~vD  260 (480)
                         ..  ...+..+|.+     |++++++.+.++      +++|+++..++..|.+.+    +++|.++|++||+++++|
T Consensus       156 ~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~------~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~D  224 (403)
T PRK05093        156 SDGFGPKPADITHVPFN-----DLAAVKAVIDDH------TCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFD  224 (403)
T ss_pred             hhcCCCCCCCcEEeCCC-----CHHHHHHHhcCC------eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence               11  1134445444     789999888643      888998865544454433    999999999999999999


Q ss_pred             ccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcc
Q psy12303        261 AAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKV  340 (480)
Q Consensus       261 ~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  340 (480)
                      ++|++.......... ...++ ..|+.+  +.|.+++++..|+++.++ .+.+.......    ..             +
T Consensus       225 Ev~~g~g~~g~~~~~-~~~~~-~pdi~s--~sK~l~~G~rig~vv~~~-~i~~~l~~~~~----~~-------------t  282 (403)
T PRK05093        225 EVQTGMGRTGDLFAY-MHYGV-TPDILT--SAKALGGGFPIGAMLTTA-EIASHFKVGTH----GS-------------T  282 (403)
T ss_pred             chhhCCCCCccchhh-hhcCC-CCCEEE--ecccccCCcceEEEEEcH-HHHhhcCCCCC----CC-------------C
Confidence            999965332211111 12233 466554  679999778899998754 33332211000    00             0


Q ss_pred             ccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEecC-CceeEEEEEeecCccCCCchhhHH
Q psy12303        341 IQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD-KFYLILE-PEMVNVSFWYLPTRVRNMPHEKRL  418 (480)
Q Consensus       341 ~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~-g~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~~  418 (480)
                      + ++.+....++..+|+.+..   .+..++..++.+++.+.|++ +. .+.++.. +..+.+.+...+....        
T Consensus       283 ~-~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~G~~~~~~l~~~~~--------  349 (403)
T PRK05093        283 Y-GGNPLACAVAEAVFDIINT---PEVLEGVKARRQRFVDGLQK-INQKYGVFSEIRGMGLLIGAELKPQYK--------  349 (403)
T ss_pred             C-CCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHH-HHhhCCCeEeEeeCceEEEEEecCcch--------
Confidence            0 1111122223333333311   34557777888888888877 41 1112112 2233333222221100        


Q ss_pred             HHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        419 NILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       419 ~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                          ....++...+.++|+++...    + .+++|++ ++..+++++|++++++|++++++
T Consensus       350 ----~~~~~~~~~l~~~Gv~v~~~----g-~~~lRl~-~~~~~~~~~i~~~~~~l~~~l~~  400 (403)
T PRK05093        350 ----GRARDFLNAAAEEGVMVLVA----G-PDVLRFA-PSLVIEEADIDEGLARFEKAVAK  400 (403)
T ss_pred             ----hHHHHHHHHHHHCCeEEecC----C-CCEEEEe-CCCCCCHHHHHHHHHHHHHHHHH
Confidence                01245678888888554321    3 4799998 78888999999999999987754

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.78  E-value=1.8e-16  Score=156.86  Aligned_cols=168  Identities=18%  Similarity=0.176  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCch------hHHHHHHH
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHY------SVRSCAAV  187 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~------s~~~~~~~  187 (480)
                      ...+.+.+++++|.+.  .+++++|+.|+..++.+. .              +|+ +|+++...|.      ++...+..
T Consensus       124 ~~~le~~lA~l~gae~--alvv~sg~aAi~l~l~~l-~--------------~Gd-eVIvs~~e~v~~ggs~~i~~~~~~  185 (454)
T TIGR00474       124 YSHVEGLLCELTGAED--ALVVNNNAAAVLLALNTL-A--------------KGK-EVIVSRGELVEIGGSFRIPDVMEQ  185 (454)
T ss_pred             HHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHh-C--------------CcC-EEEECCChhhhhcchhhHHHHHHH
Confidence            3567788999999976  677888999988887442 1              445 7888877653      23345555


Q ss_pred             cCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcc--c--cccChHHHHHHHHHcCcEEEeeccc
Q psy12303        188 CGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVL--G--AFDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       188 ~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~--G--~~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                      .|+   +++.++++  ...++++++++|+++      |++|++++.+|++  |  .+.|+++|+++|++||+++++|++.
T Consensus       186 ~G~---~~~~v~~~--~~~~l~dle~aI~~~------T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~s  254 (454)
T TIGR00474       186 SGA---KLVEVGTT--NRTHLKDYEDAITEN------TALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGS  254 (454)
T ss_pred             cCC---EEEEeCCC--CCCCHHHHHHhcCcC------CEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCC
Confidence            676   77777654  345899999999876      8999999998874  6  5789999999999999999999864


Q ss_pred             cccccccccc---cCcccC--CCCCCccceeCccccCCCcccceEEEEeCchhhH
Q psy12303        264 GGGLLLSKKY---RHPRLT--GIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLI  313 (480)
Q Consensus       264 ~~~~~~~~~~---~~~~~~--~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~  313 (480)
                      |... ....+   ..|.+.  .-.++|++++|+|||+++|. .|+++.++ +.+.
T Consensus       255 G~l~-~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~-~G~i~g~~-~~i~  306 (454)
T TIGR00474       255 GSLV-DLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQ-AGIIVGKK-ELIE  306 (454)
T ss_pred             cccc-cchhccCCCCcccccHhHcCCCEEEecCccccCCCe-EEEEEECH-HHHH
Confidence            3310 10000   000100  01279999999999999885 67777654 4443

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.78  E-value=1.6e-16  Score=157.81  Aligned_cols=302  Identities=12%  Similarity=0.063  Sum_probs=180.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG  191 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~  191 (480)
                      ....++.+.++++++.+  .+.|++||++||..|++++|....    ..+..  +...++......|.+...++...+..
T Consensus        81 ~~~~~la~~l~~~~~~~--~v~~~~sGseA~e~Alk~ar~~~~----~~~~~--~r~~ii~~~~~yHG~t~~~~~~~~~~  152 (406)
T PRK12381         81 EPVLRLAKKLIDATFAD--RVFFCNSGAEANEAALKLARKYAH----DRYGS--HKSGIVAFKNAFHGRTLFTVSAGGQP  152 (406)
T ss_pred             HHHHHHHHHHHhhCCCC--eEEEcCCcHHHHHHHHHHHHHHHh----hcCCC--CCCeEEEECCCcCCcchhHHhhcCCc
Confidence            33455677788877653  699999999999999999986411    11110  11324555666777766555544421


Q ss_pred             C---------CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccc-c----cChHHHHHHHHHcCcEE
Q psy12303        192 T---------DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGA-F----DPIEEIADICQKYNMWL  257 (480)
Q Consensus       192 ~---------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~-~----~~l~~I~~i~~~~~~~l  257 (480)
                      .         ..+..+|.+     |+++|++.+++.      +++|+++.. +++|. +    ..+++|.++|++||+++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~------~aaviiEPv-~~~gg~~~~~~~~l~~l~~l~~~~~~ll  220 (406)
T PRK12381        153 KYSQDFAPLPPDIRHAAYN-----DLNSASALIDDQ------TCAVIVEPI-QGEGGVIPADKAFLQGLRELCDRHNALL  220 (406)
T ss_pred             ccccCCCCCCCCeeEeCCC-----CHHHHHHhccCC------eeEEEEeCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence            0         122333332     788999888643      788888755 55553 3    44899999999999999


Q ss_pred             EeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCC
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  337 (480)
                      ++|++|.+.......+.. ...++ ..|+++  +.|.+++++..|+++.++ ++.......    ....           
T Consensus       221 I~DEv~tG~gr~G~~~~~-~~~~v-~pDi~t--~sK~l~gG~~ig~~~~~~-~~~~~~~~~----~~~~-----------  280 (406)
T PRK12381        221 IFDEVQTGVGRTGELYAY-MHYGV-TPDVLT--TAKALGGGFPIGAMLTTE-KCASVMTVG----THGT-----------  280 (406)
T ss_pred             EEcchhhCCCCCcchhhh-HhhCC-CCCEEE--ehhhhhCCCceEEEEEcH-HHHhhcCCC----CCCC-----------
Confidence            999999765443222211 23344 467654  679998778889988653 343322110    0000           


Q ss_pred             CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEecCC-c-eeEEEEEeecCccCCCch
Q psy12303        338 DKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD-KFYLILEP-E-MVNVSFWYLPTRVRNMPH  414 (480)
Q Consensus       338 ~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~-g~~~~~~~-~-~~~v~f~~~~~~~~~~~~  414 (480)
                        ++ ++.+.....+.++++.+.   -.++.++..++.+++.+.|++ .. .+.++..+ . ..++.+.+.+ ..     
T Consensus       281 --t~-~~~pl~~aaa~a~l~~l~---~~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~vrg~Gl~~~~~l~~-~~-----  347 (406)
T PRK12381        281 --TY-GGNPLASAVAGKVLELIN---TPEMLNGVKQRHDWFVERLNT-INARYGLFSEIRGLGLLIGCVLNA-EY-----  347 (406)
T ss_pred             --CC-CCCHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHHH-HHhhCCCEEEEecCeEEEEEEecC-ch-----
Confidence              00 111122333334444432   234667888888888888877 41 22222222 1 2222232211 10     


Q ss_pred             hhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        415 EKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       415 ~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                             ......+.+.+.++|.++...    + .+.+|++ ++..+|++||++++++|++++++
T Consensus       348 -------~~~~~~~~~~l~~~Gv~v~~~----g-~~~lRl~-p~~~~t~~~i~~~~~~l~~~l~~  399 (406)
T PRK12381        348 -------AGKAKQISQEAAKAGVMVLIA----G-PNVVRFA-PALNISEEEITTGLDRFARACER  399 (406)
T ss_pred             -------hhHHHHHHHHHHHCCcEEeeC----C-CCEEEEe-CCccCCHHHHHHHHHHHHHHHHH
Confidence                   001245678888898655321    2 4689999 88889999999999999987654

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.78  E-value=6.7e-16  Score=154.52  Aligned_cols=316  Identities=15%  Similarity=0.107  Sum_probs=188.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      .+.+.++.+.++++++-....+.|+++||+||..|++.||..       .|.     +..|......|.+...+....+-
T Consensus        85 ~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~-------tgr-----~~ii~~~~~yHG~t~~~~s~~~~  152 (433)
T PRK08117         85 YESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHV-------TKR-----PYIISFTGCFHGRTLGALSVTTS  152 (433)
T ss_pred             CHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHh-------cCC-----CeEEEECCCcCCcCHHHHhhcCC
Confidence            345566777788887322246899999999999999999864       221     32566666778877666544321


Q ss_pred             --------C--CCCeEEeeCCCCCC------------CCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hH
Q psy12303        191 --------G--TDNCVEVPSDKRGR------------LIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IE  244 (480)
Q Consensus       191 --------~--~~~v~~v~~~~~~~------------~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~  244 (480)
                              .  ...+..+|....++            -++++|++.++... .+..+++|+++......|.+.|    ++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~aavi~Epi~~~~G~~~~~~~~l~  231 (433)
T PRK08117        153 KSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQV-TPEEVAAVIIEPVLGEGGYIVPPKSFLK  231 (433)
T ss_pred             CccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhcc-CCCcEEEEEECCeeCCCCCccCCHHHHH
Confidence                    0  11234455432111            14556676665321 1234889999999999999988    99


Q ss_pred             HHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccc
Q psy12303        245 EIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLF  324 (480)
Q Consensus       245 ~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~  324 (480)
                      +|.++|++||+++++|++|+++......+.. ...++ .+|+++  +.|.+++++++|+++.++ ++.......   .  
T Consensus       232 ~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~-~~~gv-~pDi~t--~sK~lg~G~pigav~~~~-~i~~~~~~~---~--  301 (433)
T PRK08117        232 KLREICDRHGILLIFDEVQTGFGRTGEWFAA-QTFGV-VPDIMT--IAKGIASGLPLSAVVASK-ELMEQWPLG---S--  301 (433)
T ss_pred             HHHHHHHHcCCEEEEecchhccCccccchhH-hhcCC-CCCEee--hhhhccCCCcceeEEEcH-HHHhhccCC---C--
Confidence            9999999999999999999975433222111 12234 467654  789999778889888654 443322100   0  


Q ss_pred             ccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEecC-Cce-eEEE
Q psy12303        325 MQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD-KFYLILE-PEM-VNVS  401 (480)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~-g~~~~~~-~~~-~~v~  401 (480)
                      +.          .  ++ .+.+....++.++++.+..   ....++..++.+++.+.|.+ +. .+.++.. +.. .++.
T Consensus       302 ~~----------~--T~-~~np~~~aaa~a~L~~l~~---~~l~~~~~~~g~~l~~~L~~-l~~~~~~~~~vrg~Gl~~g  364 (433)
T PRK08117        302 HG----------T--TF-GGNPVACAAALATLEVIKE---EKLLDNANEMGAYALERLEV-LKEKHPVIGDVRGIGLMIG  364 (433)
T ss_pred             CC----------C--CC-CcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHH-HHhcCCceeeeecCCcEEE
Confidence            00          0  00 1111233334444444322   24556667777777777765 31 1111111 222 2223


Q ss_pred             EEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        402 FWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       402 f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.+.++.  .....       .....+.+.+.+.|.++....  .. .+++|++ ++..+|+++|++++++|.+.+++
T Consensus       365 i~~~~~~--~~~~~-------~~~~~~~~~l~~~Gv~~~~~g--~~-~~~lRl~-p~~~~t~~~i~~~~~~l~~~l~~  429 (433)
T PRK08117        365 IEIVDPD--GEPDG-------DAVEKILDKCLEKGLLFYLCG--NA-GNVLRMI-PPLTVTKEEIDEGLDILDEALTE  429 (433)
T ss_pred             EEEecCC--CCcch-------HHHHHHHHHHHHCCCEEeecC--CC-CCEEEEe-CCccCCHHHHHHHHHHHHHHHHH
Confidence            3333221  00000       112456788889996654321  11 4799999 88999999999999999987654

>KOG1357|consensus

Probab=99.78  E-value=2.1e-17  Score=154.15  Aligned_cols=345  Identities=15%  Similarity=0.096  Sum_probs=224.3

Q ss_pred             cCCCCCccccccCCCChHHhHHHHHHHH-cCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHH
Q psy12303         69 RTGHPMFMNQLSCGLDVVSMAGEWLIAT-ANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFL  147 (480)
Q Consensus        69 ~~~~p~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~  147 (480)
                      +.++.+|+++..+.........+.+..+ ++...  .....+..+..+++.+.+|+++|.+. ..+|.. |-..|.+.+-
T Consensus       140 NlgSYNYLGFa~~~g~ca~~~~~~~~kygl~~cs--s~~e~G~~~~hkelE~l~A~f~g~e~-a~vF~m-Gf~TNs~~~p  215 (519)
T KOG1357|consen  140 NLGSYNYLGFAQSVGPCAEASLKSFDKYGLSRCS--SRHEAGTTEEHKELEELVARFLGVED-AIVFSM-GFATNSMNIP  215 (519)
T ss_pred             eecccccccccccCCcCChHHHHHHHHhcccccc--cchhcccHHHHHHHHHHHHHhcCCcc-eEEEec-cccccccCcc
Confidence            3457789998755444433333444432 22221  12233446777788899999999976 344444 4444544444


Q ss_pred             HHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCC-----
Q psy12303        148 AARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKG-----  222 (480)
Q Consensus       148 ~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~-----  222 (480)
                      +...              ||. .|+..+..|.|+...|++.|.   .++....|     |..+||+.|++....|     
T Consensus       216 ~l~~--------------~gs-LIiSDelNHaSi~~GaRLSgA---tiRVfkHN-----dm~~LEr~Lrd~I~~gqP~Th  272 (519)
T KOG1357|consen  216 SLLG--------------KGS-LIISDELNHASLITGARLSGA---TTRVFRHN-----DMQGLERLLRDAIVYGQPKTH  272 (519)
T ss_pred             eeec--------------CCc-ceeeccccchheeccccccCc---eEEEEecC-----CHHHHHHHHHHHHhcCCCCcC
Confidence            4433              323 788899999999999999998   77888887     8899999999887554     


Q ss_pred             --CccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccc-cc--ccCcccCCCCCCccceeCccccCCC
Q psy12303        223 --DIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLS-KK--YRHPRLTGIERADSVTWNPHKLMGT  297 (480)
Q Consensus       223 --~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~-~~--~~~~~~~~~~~~D~~~~s~hK~~~~  297 (480)
                        .+..+|++....++-|.++++.++.+++|++..+++.|+||+.+++.. ..  ..+ ...+-+++|++...+-|.+++
T Consensus       273 rp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~-~g~d~~dvDImMGtftKSfga  351 (519)
T KOG1357|consen  273 RPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEY-FGVDPEDVDIMMGTFTKSFGA  351 (519)
T ss_pred             CcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeec-cCCCchhheeecceehhhccc
Confidence              233577888888899999999999999999999999999999998721 11  011 112234789999999999986


Q ss_pred             cccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh----cHHHHHHHHHHHHH
Q psy12303        298 LLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK----GDEGFEKQIDRLME  373 (480)
Q Consensus       298 p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~----g~~~~~~~~~~~~~  373 (480)
                         +|..+...+.+.+......+.-.....               .+. .-+-....+++.+    |.+.-++.+++..+
T Consensus       352 ---~GGyiagsk~lid~lrt~s~~~~yat~---------------~sp-pvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~  412 (519)
T KOG1357|consen  352 ---AGGYIAGSKELIDYLRTPSPSALYATS---------------LSP-PVAQQILTSVKHIMGEDGTNRGRQKIERLAE  412 (519)
T ss_pred             ---ccceecCcHHHHhhhccCCCceeeccc---------------CCh-HHHHHHHHHHHhhcCCCcccHHHHHHHHHHh
Confidence               566666666555443322221111100               000 1111222233322    45566888999999


Q ss_pred             HHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeee--CCcccE
Q psy12303        374 LAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPL--NDLPNF  451 (480)
Q Consensus       374 l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~--~~~~~~  451 (480)
                      ++.+++..|++  .||.++++..+..+-..+.++...               ..+.+.|.+++..++..+..  .-....
T Consensus       413 ns~yfr~~l~~--~gfivyG~~dSpVvplll~~~~k~---------------~~f~r~~l~~nigvVvvgfPatpl~e~r  475 (519)
T KOG1357|consen  413 NSRYFRWELQK--MGFIVYGNNDSPVVPLLLYGPAKI---------------VAFSREMLERNIGVVVVGFPATPLLESR  475 (519)
T ss_pred             hhHHHHHhhhc--CcEEEecCCCCCcceeeecCcccc---------------cHHHHHHHhcCceEEEEeCCCchHHHhH
Confidence            99999999999  799998876655444433322211               13445666666443332111  111356


Q ss_pred             EEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        452 FRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       452 ~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .|+| .+..+|.|+++++++.+.+..+
T Consensus       476 ~R~c-~Sa~ht~e~ld~~l~~i~~~g~  501 (519)
T KOG1357|consen  476 ARFC-LSASHTKEDLDRALEVIDRVGD  501 (519)
T ss_pred             HHhh-hcccccHHHHHHHHHHHhhhch
Confidence            7999 8889999999999999988754

>PRK06062 hypothetical protein; Provisional

Probab=99.78  E-value=8.5e-16  Score=153.55  Aligned_cols=320  Identities=14%  Similarity=0.066  Sum_probs=188.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      .+...++.+.+++++..+-..+.|+++||+|+..|++.||..       .|.     +.+|......|.....+....+.
T Consensus        94 ~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~-------tgr-----~~ii~~~~~yHG~t~~als~~~~  161 (451)
T PRK06062         94 NDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLH-------TGR-----PKVLSAYRSYHGGTGSAINLTGD  161 (451)
T ss_pred             CHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHh-------hCC-----ceEEEEeCCCCCCCHHHHhhcCC
Confidence            455566778888887543357999999999999999999875       221     22444555667766666655432


Q ss_pred             C--------CCCeEEeeCCCCCC------CC-------HHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHH
Q psy12303        191 G--------TDNCVEVPSDKRGR------LI-------PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEE  245 (480)
Q Consensus       191 ~--------~~~v~~v~~~~~~~------~d-------~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~  245 (480)
                      .        ...+..++.....+      -|       +++|++.++..  .+..+++|+++......|.+.|    +++
T Consensus       162 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~iAaviiEPv~g~gG~~~p~~~yl~~  239 (451)
T PRK06062        162 PRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELE--GPSTIAAILLESVPGTAGILVPPPGYLAG  239 (451)
T ss_pred             cccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEccccCCCCcccCCHHHHHH
Confidence            1        01223333221111      12       56677777531  1245899999999998999988    999


Q ss_pred             HHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCccccc
Q psy12303        246 IADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSAEYLF  324 (480)
Q Consensus       246 I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~l~  324 (480)
                      |.++|++||+++|+|++++++......+.. ...|+ .+|+++  +.|.+++++ ++|+++.++ ++.+....  ..+. 
T Consensus       240 lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~-~~~gv-~PDi~t--~gK~lggG~~Pigav~~~~-~i~~~~~~--~~~~-  311 (451)
T PRK06062        240 VRELCDRHGIVLIADEVMAGFGRTGKWFAI-EHFGV-VPDLIT--FAKGVNSGYVPLGGVAISE-AIAATFAD--RPYP-  311 (451)
T ss_pred             HHHHHHHcCCEEEeeccccCCCcCcHHHHH-HhcCC-CCCeee--echhhhcCCcCcEEEEEcH-HHHHHhcc--CCCC-
Confidence            999999999999999999986554433333 34456 689888  579999875 788888765 44443211  1111 


Q ss_pred             ccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHH-HHHHHHHhcC---CCCeEEecCCceeEE
Q psy12303        325 MQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELA-EYMVKKIKSM---PDKFYLILEPEMVNV  400 (480)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~-~~l~~~l~~~---~~g~~~~~~~~~~~v  400 (480)
                      +.          .  ++ .+.+....++.++|+.+..+.   ..++..++. ++|.+.|++.   .+.+.-+ .-...++
T Consensus       312 ~~----------~--T~-~gnpl~~Aaa~a~L~~l~~~~---l~~~~~~~G~~~l~~~L~~l~~~~~~v~~v-rG~Gl~~  374 (451)
T PRK06062        312 GG----------L--TY-SGHPLACAAAVATINAMEEEG---IVENAARIGAEVLGPGLRELAERHPSVGEV-RGLGVFW  374 (451)
T ss_pred             CC----------C--CC-CCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhcCCcEEeE-eccccEE
Confidence            10          0  00 111223334444454443332   445555555 3555555441   3322111 1223334


Q ss_pred             EEEeecCcc-C-CCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        401 SFWYLPTRV-R-NMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       401 ~f~~~~~~~-~-~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .+.+..... . ........   ......+.+.+.++|.++...      .+.+|++ +...+|++|||++++++++.++
T Consensus       375 gve~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~Gvl~~~~------~~~lrl~-ppl~~t~~eid~~~~~l~~~l~  444 (451)
T PRK06062        375 ALELVADRETREPLAPYGAS---SAAMAAVKAACKERGLLPFVN------GNRIHVV-PPCTVTEDEVREGLAILDAALA  444 (451)
T ss_pred             EEEEcccccccCCCcccchh---hHHHHHHHHHHHHCCcEEeec------CCEEEEE-CCccCCHHHHHHHHHHHHHHHH
Confidence            444432110 0 00000000   012346778889999653221      3689998 8889999999999999998876


Q ss_pred             c
Q psy12303        479 D  479 (480)
Q Consensus       479 ~  479 (480)
                      +
T Consensus       445 ~  445 (451)
T PRK06062        445 V  445 (451)
T ss_pred             H
Confidence            4

>PRK08354 putative aminotransferase; Provisional

Probab=99.78  E-value=1.8e-16  Score=151.94  Aligned_cols=149  Identities=14%  Similarity=0.082  Sum_probs=112.7

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCe
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNC  195 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v  195 (480)
                      .+++++++.+|.   ++++|+|+++++..++....               +|+ .|++..++|+.+..+++.+|.   ++
T Consensus        44 ~l~~~ia~~~~~---~I~vt~G~~~al~~~~~~~~---------------~gd-~vlv~~P~y~~~~~~~~~~g~---~~  101 (311)
T PRK08354         44 WLEEEFSKLFGE---PIVITAGITEALYLIGILAL---------------RDR-KVIIPRHTYGEYERVARFFAA---RI  101 (311)
T ss_pred             HHHHHHHHHHCC---CEEECCCHHHHHHHHHHhhC---------------CCC-eEEEeCCCcHHHHHHHHHcCC---EE
Confidence            356778888873   59999999999876664321               335 788999999999999999998   66


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCcEEEeecccccccccccc
Q psy12303        196 VEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKK  272 (480)
Q Consensus       196 ~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~  272 (480)
                      +.++      +|++.|++.+++       ++++++++|+||||.+.+   +++|.++|+++|+|+++|++|..+......
T Consensus       102 ~~~~------~d~~~l~~~~~~-------~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~  168 (311)
T PRK08354        102 IKGP------NDPEKLEELVER-------NSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPES  168 (311)
T ss_pred             eecC------CCHHHHHHhhcC-------CCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccc
Confidence            5543      578888887652       567889999999999976   566777789999999999999876542110


Q ss_pred             ccCcccCCCCCCccceeCccccCC-CcccceEEEE
Q psy12303        273 YRHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHF  306 (480)
Q Consensus       273 ~~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~  306 (480)
                        . .    ..--+++.|+.|.++ .+..+|+++.
T Consensus       169 --~-~----~~~vi~~~S~SK~~~l~GlRiG~~v~  196 (311)
T PRK08354        169 --P-E----GENIIKLRTFTKSYGLPGIRVGYVKG  196 (311)
T ss_pred             --c-C----CCcEEEEeccHhhcCCccceeeeeee
Confidence              1 0    122356678999998 4478898886

>PRK12403 putative aminotransferase; Provisional

Probab=99.77  E-value=1.5e-15  Score=152.08  Aligned_cols=326  Identities=13%  Similarity=0.110  Sum_probs=188.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEe-cCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFT-SDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~-~~~~h~s~~~~~~~~g  189 (480)
                      .....++.+.++++++.+-..++|+++||+||..|++.+|...    ...|.   +++.+|+. ....|.+...++...|
T Consensus        97 ~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~----~~~g~---~~r~~ii~~~~~yHG~t~~~~s~s~  169 (460)
T PRK12403         97 HPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYW----QVLGK---PQKKIMIGRWNGYHGSTLAATALGG  169 (460)
T ss_pred             CHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHH----HhhCC---CCCcEEEEECCCcCcccHhhhhcCC
Confidence            4555667788888886433469999999999999999998641    11222   22324433 4446888776666554


Q ss_pred             CCC--------CCeEEeeCCCCC----CC--------CHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHH
Q psy12303        190 LGT--------DNCVEVPSDKRG----RL--------IPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEE  245 (480)
Q Consensus       190 ~~~--------~~v~~v~~~~~~----~~--------d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~  245 (480)
                      ...        ..+..+|....+    .+        +.++|++.+.+.  ....+++|+++..+...|.+.|    +++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~--~~~~iaavI~Epv~g~gG~~~~~~~yl~~  247 (460)
T PRK12403        170 MKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILEL--GAENVAGFVAEPFQGAGGMIFPPESYWPE  247 (460)
T ss_pred             CccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHh--CCCceEEEEEccccCCCCCccCCHHHHHH
Confidence            321        123344422111    11        124455555432  1234889999999888898877    999


Q ss_pred             HHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCccccc
Q psy12303        246 IADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSAEYLF  324 (480)
Q Consensus       246 I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~l~  324 (480)
                      |.++|++||+++|+|++++++......+.. ...|+ ..|+++  +.|.+++++ ++|++++++ ++.+........+..
T Consensus       248 lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~-e~~gv-~PDiv~--~gK~lggG~~Piga~v~~~-~i~~~~~~~~~~~~~  322 (460)
T PRK12403        248 IQRICRQYDVLLCADEVIGGFGRTGEWFAH-EHFGF-EPDTLS--IAKGLTSGYVPMGGLVLSK-RIAEALVEQGGVFAH  322 (460)
T ss_pred             HHHHHHHcCCEEEEeccccCCCcCchhhhh-hhcCC-CCCeEE--EcccccccccceEEEEECH-HHHHHHhcCCCcccc
Confidence            999999999999999999877555444333 34456 579998  679998875 788888653 443332111111111


Q ss_pred             ccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHH-HHHHHHHHHHhcC---CCCeEEecCCceeEE
Q psy12303        325 MQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLM-ELAEYMVKKIKSM---PDKFYLILEPEMVNV  400 (480)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~-~l~~~l~~~l~~~---~~g~~~~~~~~~~~v  400 (480)
                      ..           ++   .+.+....++.++|+.+-.+.   ..++.. ++.++|.+.|++.   .+-+.-+ .-.+.++
T Consensus       323 ~~-----------T~---~gnPl~~Aaala~L~~i~~~~---l~~~~~~~~g~~l~~~L~~l~~~~~~i~~v-rG~Gl~~  384 (460)
T PRK12403        323 GL-----------TY---SGHPVAAAVAIANLKALRDEG---VVTRVKDDTGPYLQRCLREVFGDHPLVGEV-QGAGLVA  384 (460)
T ss_pred             CC-----------CC---CCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHhcCCCEEeE-eecceEE
Confidence            10           00   111123333444454443332   345554 5666666666530   2222211 1223344


Q ss_pred             EEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        401 SFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       401 ~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+.+.............    ..+...+...+.++|.++...      .+.+|++ +....|++||+++++++++.+++
T Consensus       385 gie~~~~~~~~~~~~~~----~~~~~~~~~~~~~~Gll~~~~------~~~~~l~-Ppl~it~~eid~~~~~l~~al~~  452 (460)
T PRK12403        385 ALQFAEDKATRKRFANE----NDLAWRCRTIGFEEGVIIRST------LGRMIMA-PALVAGRAEIDELVDKTRIAVDR  452 (460)
T ss_pred             EEEEccCccccccccch----hHHHHHHHHHHHhCCEEEEec------CCEEEEE-CCCCCCHHHHHHHHHHHHHHHHH
Confidence            44443221110000000    011234667778899554321      2468998 88899999999999999987754

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.77  E-value=9.5e-16  Score=152.82  Aligned_cols=319  Identities=15%  Similarity=0.108  Sum_probs=187.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCce-EEEecCCCchhHHHHHHHcCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQL-VMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~-~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      +.+.++.+.+++++...-..+.|+++||+|+..|++.||...    ..+|.   +++. +|......|.....+....|.
T Consensus        89 ~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~AlklAr~~~----~~~g~---~~r~~ii~~~~~yHG~t~gals~tg~  161 (442)
T PRK13360         89 PKAFELANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYH----RARGE---GSRTRLIGRERGYHGVGFGGISVGGI  161 (442)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHH----HhcCC---CCCcEEEEEcCCcCCccHhhhhccCC
Confidence            445567788888874322469999999999999999998741    11121   1222 444555566655444433331


Q ss_pred             C---------CCCeEEeeCCCC-----CCC--------CHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hH
Q psy12303        191 G---------TDNCVEVPSDKR-----GRL--------IPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IE  244 (480)
Q Consensus       191 ~---------~~~v~~v~~~~~-----~~~--------d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~  244 (480)
                      .         ...+..+|...+     +..        ..++|+++++..  .+..+.+|++...+...|.+.|    ++
T Consensus       162 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~aavivEpi~g~~G~~~~~~~fl~  239 (442)
T PRK13360        162 VPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLH--DASTIAAVIVEPVAGSTGVLIPPKGYLQ  239 (442)
T ss_pred             hhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEccccCCCCCccCCHHHHH
Confidence            1         112344443311     111        145677777532  2245889999999999999988    99


Q ss_pred             HHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCc---
Q psy12303        245 EIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSA---  320 (480)
Q Consensus       245 ~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~---  320 (480)
                      +|.++|++||+++++|+++.++......+.. ...++ .+|+++  +.|.++++ .++|+++.++ ++.+.......   
T Consensus       240 ~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~-~~~gv-~PDivt--~gK~l~gG~~P~gav~~~~-~i~~~~~~~~~~~~  314 (442)
T PRK13360        240 RLREICDKHGILLIFDEVITGFGRLGAPFAA-QYFGV-TPDLLT--CAKGLTNGAIPMGAVFVSS-EIHDAFMQGPEAGI  314 (442)
T ss_pred             HHHHHHHHcCCEEEEechhhCCCCCccchhh-hhcCC-CCceee--eeeccccCccceEEEEEcH-HHHHHhhcCCcccc
Confidence            9999999999999999999765443333333 33455 589887  57998865 4688877654 34332211100   


Q ss_pred             ccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc-ee-
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE-MV-  398 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~-~~-  398 (480)
                      .++..             .++ .+.+....++.++|+.+..+   ...++..++.++|.+.|++ +..+..+.+.. .+ 
T Consensus       315 ~~~~~-------------~T~-~g~pl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~l~~-l~~~~~v~~vrG~Gl  376 (442)
T PRK13360        315 EFFHG-------------YTY-SGHPLACAAALATLDLYERE---GLLTRAARLAPYWEDALHS-LRDAPHVIDIRNLGL  376 (442)
T ss_pred             ccccC-------------CCC-CCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHH-hhcCCCeeeeeccce
Confidence            01100             011 12222333444445544333   3567778888888888876 43222222211 11 


Q ss_pred             EEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        399 NVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       399 ~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      ...+.+.+.....   .+       ...++...+.++|.++ ..    . .+.+|++ ++..+|++|||+++++|++.++
T Consensus       377 ~~~~~l~~~~~~~---~~-------~~~~~~~~l~~~Gvl~-~~----~-~~~lr~~-Ppl~~t~~eid~~~~~l~~~l~  439 (442)
T PRK13360        377 VGAVELAPRDGKP---GK-------RAYEVFLKCFEKGLMI-RY----T-GDILALS-PPLIIEEAQIDELFDILAQALK  439 (442)
T ss_pred             EEEEEEecCCCCc---ch-------hHHHHHHHHHHCCcEE-Ee----c-CCEEEEe-CCCccCHHHHHHHHHHHHHHHH
Confidence            1222222211100   00       1235667888888544 32    1 3589999 9999999999999999999876


Q ss_pred             c
Q psy12303        479 D  479 (480)
Q Consensus       479 ~  479 (480)
                      +
T Consensus       440 ~  440 (442)
T PRK13360        440 E  440 (442)
T ss_pred             H
Confidence            5

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.77  E-value=3.9e-16  Score=151.17  Aligned_cols=272  Identities=11%  Similarity=0.005  Sum_probs=178.0

Q ss_pred             HHHHHHHHHHhCCCC-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        115 TVVLEKMRQIIGWQG-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       115 ~~~~~~la~~~g~~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      .++++++++.+|.++ +++++|+|+++++.... .+..              ||+  |++..++++.+..+++..|.   
T Consensus        56 ~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~-~~~~--------------~g~--v~v~~P~y~~y~~~~~~~g~---  115 (339)
T PRK06959         56 DGLAACAARYYGAPDAAHVLPVAGSQAAIRALP-ALLP--------------RGR--VGIAPLAYSEYAPAFARHGH---  115 (339)
T ss_pred             HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHH-HhcC--------------CCe--EEEcCCCcHHHHHHHHHCCC---
Confidence            567888999999964 79999999999886443 2221              434  66688899999999999998   


Q ss_pred             CeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHH---HHHcCcEEEeecccccccccc
Q psy12303        194 NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADI---CQKYNMWLHVDAAWGGGLLLS  270 (480)
Q Consensus       194 ~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i---~~~~~~~l~vD~a~~~~~~~~  270 (480)
                      +++.++.+.      +.    +.+.      ++++++++|+||||.+.+.+++.++   |++++.++++|++|..+... 
T Consensus       116 ~~~~v~~~~------~~----~~~~------~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~-  178 (339)
T PRK06959        116 RVVPLDEAA------DT----LPAA------LTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA-  178 (339)
T ss_pred             EEEeecccc------hh----cccc------CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc-
Confidence            777777653      11    2222      4589999999999999886666555   56789999999999876421 


Q ss_pred             ccccCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCc
Q psy12303        271 KKYRHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI  349 (480)
Q Consensus       271 ~~~~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~  349 (480)
                      +.... .. ..++ -++..|++|.++ .+..+|+++. ++++++.......+|.                       ...
T Consensus       179 ~s~~~-~~-~~~~-vi~l~SfSK~~gl~GlRiGy~v~-~~~li~~l~~~~~~~~-----------------------vs~  231 (339)
T PRK06959        179 ASLAA-HT-DRPG-LVVLRSVGKFFGLAGVRAGFVLA-APALLAALRDALGAWT-----------------------VSG  231 (339)
T ss_pred             ccchh-cc-CCCC-EEEEecChhhcCCcchheEEEec-CHHHHHHHHHhcCCCC-----------------------CcH
Confidence            11111 11 1111 256679999998 5578999886 4555554433222221                       112


Q ss_pred             hHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHH
Q psy12303        350 FKLWLQWRAKG-DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPIL  428 (480)
Q Consensus       350 l~~~~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i  428 (480)
                      +...++...+. .+..++..++..+.++++.+.|++ . |+++.  + .+++++...+ .                ..++
T Consensus       232 ~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~-~-g~~~~--~-~~~f~~~~~~-~----------------~~~l  289 (339)
T PRK06959        232 PARHAVRAAFADAAWQAAMRERLAADGARLAALLRA-H-GFAVH--A-TPLFSWTDDP-R----------------AAAL  289 (339)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-C-CCCcc--C-cceEEEEeCC-C----------------HHHH
Confidence            23333333332 344566778888889999999999 4 77664  2 2334332111 1                2356


Q ss_pred             HHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        429 KGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       429 ~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+.|.++|+.+..+   .. .+++|+++   ..+.+++++++++|+++.+.
T Consensus       290 ~~~l~~~GI~vr~~---~~-~~~lRisi---~~~~~e~~~l~~al~~~~~~  333 (339)
T PRK06959        290 HAALARRGIWTRYF---AP-PPSVRFGL---PADEAEWQRLEDALAECVPT  333 (339)
T ss_pred             HHHHHhCCeEEEEC---CC-CCeEEEEC---CCCHHHHHHHHHHHHHHHHH
Confidence            78888898655332   22 46999993   23678999999999987654

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.77  E-value=8.9e-16  Score=152.15  Aligned_cols=310  Identities=14%  Similarity=0.103  Sum_probs=182.6

Q ss_pred             HHHHHHHHHHHHHHhCCCC---CCeEE-CCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHH
Q psy12303        111 ILMETVVLEKMRQIIGWQG---GDSIL-APGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAA  186 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~---~~~~~-t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~  186 (480)
                      .+...++.+.+++++..+.   ..+.| +++||+|+..|++.||..       +|.     +.+|......|.....+..
T Consensus        77 ~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~-------tgr-----~~ii~~~~~yHG~t~~als  144 (412)
T TIGR02407        77 TEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKV-------TGR-----SNVVSFTNAFHGMTLGSLS  144 (412)
T ss_pred             cHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhh-------cCC-----CeEEEECCCcCCchHHHHH
Confidence            4555567777777653221   13556 589999999999999864       221     2244455566777666665


Q ss_pred             HcCC-------C--CCCeEEeeCCCCCC---CCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHH
Q psy12303        187 VCGL-------G--TDNCVEVPSDKRGR---LIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADIC  250 (480)
Q Consensus       187 ~~g~-------~--~~~v~~v~~~~~~~---~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~  250 (480)
                      ..+.       +  ...+..+|......   -+++.+++.+++.......+++|++...+.+.|.+.+    +++|.++|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc  224 (412)
T TIGR02407       145 VTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLC  224 (412)
T ss_pred             hcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHH
Confidence            5432       1  12345555432111   2466788877643211134789999999998888533    89999999


Q ss_pred             HHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCC-cccceEEEEeCchhhHhhhcCCcccccccccc
Q psy12303        251 QKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGT-LLQCSTIHFKQDGLLISCNQMSAEYLFMQDKL  329 (480)
Q Consensus       251 ~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  329 (480)
                      ++||+++++|++++|+......+.. ...++ .+|++++  .|++++ ++++|++++++. . ....   ...  +.   
T Consensus       225 ~~~g~llI~DEV~tG~GRtG~~~a~-~~~~v-~PDi~~~--~K~lg~~G~pigav~~~~~-~-~~~~---~~~--~~---  290 (412)
T TIGR02407       225 RRHDILLIVDDIQAGCGRTGTFFSF-EPAGI-EPDIVCL--SKSISGYGLPLALTLIKPE-L-DVWK---PGE--HN---  290 (412)
T ss_pred             HHcCCEEEEechhhCCCccchhHHh-cccCC-CCCEEEe--chhccCCccceeEEEEchh-h-hccC---CCc--cC---
Confidence            9999999999999876443333222 23344 6898875  499987 788999998654 2 2111   100  00   


Q ss_pred             cCcccCCCCccccCCCCCCchHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHHhc---CCCCeEEecCCceeEE-EEEe
Q psy12303        330 YDVRYDTGDKVIQCGRHNDIFKLWLQWRA-KGDEGFEKQIDRLMELAEYMVKKIKS---MPDKFYLILEPEMVNV-SFWY  404 (480)
Q Consensus       330 ~~~~~~~~~~~~~~~r~~~~l~~~~~l~~-~g~~~~~~~~~~~~~l~~~l~~~l~~---~~~g~~~~~~~~~~~v-~f~~  404 (480)
                             .++   .+.......+.+++.. +..+.   ..++..++.+++.+.|++   ..+++.. ..+..+.+ .+.+
T Consensus       291 -------~T~---~gnpl~~aaa~a~l~~~i~~~~---l~~~~~~~g~~l~~~l~~l~~~~~~~~~-~vrg~Gl~~~l~l  356 (412)
T TIGR02407       291 -------GTF---RGNNLAFVTATAALEYYWSDDA---FEKAVQRKSEIIQERLDRIVAEYPELIK-QVRGRGLMQGIEC  356 (412)
T ss_pred             -------CCC---CccHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHHHHhhCCCceE-eeecceeEEEEEe
Confidence                   001   1111122233444553 33333   345555555555555543   0443322 22223333 3332


Q ss_pred             ecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        405 LPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       405 ~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      . ..              .....+.+.+.++|+++... .. . .+.+|++ ++..+|++|++++++.|++.+++
T Consensus       357 ~-~~--------------~~~~~~~~~~~~~Gv~v~~~-~~-~-~~~lr~~-p~l~~t~~~i~~~~~~l~~~l~~  412 (412)
T TIGR02407       357 G-DG--------------DLAGKIAKAAFENGLIIETS-GP-N-DEVIKLL-PPLTIDEETLQQGLDILEQAVEE  412 (412)
T ss_pred             c-Ch--------------HHHHHHHHHHHHCCCEEecc-CC-C-CCEEEEE-CCCCCCHHHHHHHHHHHHHHHhC
Confidence            1 11              01246778888999654332 11 1 3689999 99999999999999999998764

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PLN02452 phosphoserine transaminase

Probab=99.77  E-value=1.1e-16  Score=154.74  Aligned_cols=336  Identities=14%  Similarity=0.086  Sum_probs=211.1

Q ss_pred             CccccccCCCC-hHHhHHHHHHHHcCcCC-----c-chhcChhhHHHHHHHHHHHHHHhCCCC-CCe-EECCChhHHHHH
Q psy12303         74 MFMNQLSCGLD-VVSMAGEWLIATANTNM-----F-TYEIAPVFILMETVVLEKMRQIIGWQG-GDS-ILAPGGSISNLY  144 (480)
Q Consensus        74 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~-----~-~~~~~~~~~~~e~~~~~~la~~~g~~~-~~~-~~t~ggt~a~~~  144 (480)
                      +-+++.++|.. |..++..+....+|...     . ....++-+.++-+++++.+.++++.|+ ..+ +++.|||.++..
T Consensus         7 ~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea   86 (365)
T PLN02452          7 RVFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAA   86 (365)
T ss_pred             ceEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHH
Confidence            44566666644 45666555555544221     0 112367778888899999999999964 344 556888887777


Q ss_pred             HHHHHHHhcCchhHhcCCCccCCceEEEecCCCchh--HHHHHHHcCCCCCCeEEeeCCCC--CCCCHHHHHHHHHHHHH
Q psy12303        145 AFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS--VRSCAAVCGLGTDNCVEVPSDKR--GRLIPSELERLVLERKA  220 (480)
Q Consensus       145 al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s--~~~~~~~~g~~~~~v~~v~~~~~--~~~d~~~L~~~i~~~~~  220 (480)
                      ++..+..              +|+...++. ...++  +.+.++.+|.  ..++...-..+  ...++++++    .+  
T Consensus        87 ~~~nl~~--------------~~~~~l~~~-~G~fg~r~~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~~~----~~--  143 (365)
T PLN02452         87 IPLNLCK--------------PGDKADFVV-TGSWSKKAAKEAKKYCK--TNVIASGKDEKYTKIPSVSEWE----LT--  143 (365)
T ss_pred             HHHhcCC--------------CCCeEEEEE-CCHHHHHHHHHHHHhCC--CcEEEecCCCCCCCCCChHHcC----CC--
Confidence            7766543              334344444 34444  4455566664  13322111111  135665542    11  


Q ss_pred             CCCccEEEEeccCCCcccc-ccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc
Q psy12303        221 KGDIPFFVNCTSGTTVLGA-FDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL  299 (480)
Q Consensus       221 ~~~~~~~v~~~~~~~~~G~-~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~  299 (480)
                        ..+..|.+++..|.+|. +.|++++.+      +.++||++.+.+..+.+..++       ++|+  .+.||.++ |.
T Consensus       144 --~~~~~v~~~hnETstGv~~~~~~~i~~------~~lvVDa~Ss~g~~pidv~~~-------~v~~--~saqK~lG-P~  205 (365)
T PLN02452        144 --PDAKFVHICANETIHGVEFKDYPDVGN------VPLVADMSSNFLSKPVDVSKY-------GVIY--AGAQKNVG-PS  205 (365)
T ss_pred             --CCCcEEEECCCCCCCcEecCcccccCC------CeEEEECCccccCcccCHHHc-------CEEE--EecccccC-CC
Confidence              22789999999999999 588888753      799999999999998888777       6665  58999996 99


Q ss_pred             cceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC-CCchHHHHHHHHhcHH-HHHHHHHHHHHHHHH
Q psy12303        300 QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-NDIFKLWLQWRAKGDE-GFEKQIDRLMELAEY  377 (480)
Q Consensus       300 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~~l~~~g~~-~~~~~~~~~~~l~~~  377 (480)
                      |.|+++++++.+ .......+.|+.....       ....+...+-+ +...++..+++.+-.+ |++.+.+++++++++
T Consensus       206 Gl~~v~vr~~~l-~~~~~~~~~~~~~~~~-------~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~  277 (365)
T PLN02452        206 GVTIVIIRKDLI-GNARPITPGMLDYKIH-------AENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADL  277 (365)
T ss_pred             CeEEEEEcHHHH-hhcccCCCchhhHHHH-------HhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            999999876543 3332222333211100       00001111111 2344555666666555 799999999999999


Q ss_pred             HHHHHhcCCCCeEEe-cCC---ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEE
Q psy12303        378 MVKKIKSMPDKFYLI-LEP---EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFR  453 (480)
Q Consensus       378 l~~~l~~~~~g~~~~-~~~---~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R  453 (480)
                      +++.|++ .+|+... .++   ...+++|......            +   .+++.+.+.++|.+.+..  ... .+-+|
T Consensus       278 l~~~l~~-~~G~y~~~~~~~~rs~~~vsF~~~~~~------------~---~~~f~~~~~~~g~~~~~G--~r~-~gg~R  338 (365)
T PLN02452        278 LYDAIDE-SNGFYVCPVEKSVRSLMNVPFTLGGSE------------L---EAEFVKEAAKAGMVQLKG--HRS-VGGMR  338 (365)
T ss_pred             HHHHHHh-CCCcccCCCChHHhCCeEEEEEcCCch------------h---HHHHHHHHHHCCCcccCC--ccc-cCceE
Confidence            9999999 7887221 111   2235666532111            1   357788888999654432  222 22399


Q ss_pred             EecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        454 NIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       454 ~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      ++ +....+.++|+.|++.+++..+
T Consensus       339 ~s-~yna~~~~~v~~L~~~m~~f~~  362 (365)
T PLN02452        339 AS-IYNAMPLAGVEKLVAFMKDFQA  362 (365)
T ss_pred             EE-CcCCCCHHHHHHHHHHHHHHHH
Confidence            99 7778899999999999998765

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.76  E-value=2.9e-16  Score=143.66  Aligned_cols=242  Identities=18%  Similarity=0.149  Sum_probs=167.5

Q ss_pred             hcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCch----h
Q psy12303        105 EIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHY----S  180 (480)
Q Consensus       105 ~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~----s  180 (480)
                      -+.|....+|+.    ++.+=|--  ..+.+.+|..|..+++.....              +|| .|+.+..-|.    -
T Consensus        59 i~NPT~~vlE~R----iAaLEGG~--aa~a~aSG~AA~~~ai~~la~--------------aGD-~iVss~~LYGGT~~l  117 (426)
T COG2873          59 IMNPTTDVLEER----IAALEGGV--AALAVASGQAAITYAILNLAG--------------AGD-NIVSSSKLYGGTYNL  117 (426)
T ss_pred             ccCchHHHHHHH----HHHhhcch--hhhhhccchHHHHHHHHHhcc--------------CCC-eeEeeccccCchHHH
Confidence            356777777776    55553322  367888999999999987765              567 5555543333    2


Q ss_pred             HHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEee
Q psy12303        181 VRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVD  260 (480)
Q Consensus       181 ~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD  260 (480)
                      +......+|+   ++++|..+     |++.++++|+++      |++|.+....||.+.+.|+++|+++|+++|++++||
T Consensus       118 f~~tl~~~Gi---~v~fvd~~-----d~~~~~~aI~~n------Tkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVD  183 (426)
T COG2873         118 FSHTLKRLGI---EVRFVDPD-----DPENFEAAIDEN------TKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVD  183 (426)
T ss_pred             HHHHHHhcCc---EEEEeCCC-----CHHHHHHHhCcc------cceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEe
Confidence            4445566777   89998876     899999999998      999999999999999999999999999999999999


Q ss_pred             ccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcc--cC-C
Q psy12303        261 AAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVR--YD-T  336 (480)
Q Consensus       261 ~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~-~  336 (480)
                      ...+.+++ +...++       ++|+++-|..||+++- ...|.+++..... .-.....-+.+...+..+.+.  .+ +
T Consensus       184 NT~atpyl-~rP~~h-------GADIVvHS~TK~igGhGt~iGG~iVD~G~F-Dw~~~~rfP~~~~p~p~YhGl~~~~~~  254 (426)
T COG2873         184 NTFATPYL-CRPIEH-------GADIVVHSATKYIGGHGTAIGGVIVDGGKF-DWTANGRFPEFTTPDPSYHGLVYTETF  254 (426)
T ss_pred             cCCCccee-cchhhc-------CCCEEEEeecccccCCccccceEEEeCCcc-ccccCCCCcccCCCCccccceehhhhc
Confidence            99998844 444466       9999999999999864 3467777654422 111122223333322222211  00 1


Q ss_pred             CCc----------cccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        337 GDK----------VIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       337 ~~~----------~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                      +..          --..|...+...+|..++  |.|.+.-+++|+.+++..+.+.|++ +|.+..+.
T Consensus       255 g~~af~~~~r~~~lRDlGa~lsPfnAfl~lq--GlETL~LRmerH~~NA~~vA~~L~~-HpkV~~V~  318 (426)
T COG2873         255 GNAAFIIKARVQLLRDLGATLSPFNAFLLLQ--GLETLSLRMERHCENALKVAEFLEN-HPKVAWVN  318 (426)
T ss_pred             ccHHHHHHHHHHHHHhcccccCcHHHHHHHh--chhhhHHHHHHHHHhHHHHHHHHhc-CCCeeeee
Confidence            110          000111123445555443  6888899999999999999999999 89887765

>PLN02397 aspartate transaminase

Probab=99.76  E-value=3.2e-16  Score=156.26  Aligned_cols=307  Identities=13%  Similarity=0.049  Sum_probs=189.2

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHhCCC--CCCe--EECCChhHH--HHHHHHHHHHhcCchhHhcCCCccCCceEEEecC
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQIIGWQ--GGDS--ILAPGGSIS--NLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSD  175 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~g~~--~~~~--~~t~ggt~a--~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~  175 (480)
                      ..|....+..++.+.+.+|+.+..+.+  +..+  .-+.+|+.+  +..++.+..+              ||+ .|++++
T Consensus        85 ~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~--------------pGd-~Vlv~~  149 (423)
T PLN02397         85 KEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFY--------------PGS-TIYIPN  149 (423)
T ss_pred             CCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhC--------------CCC-EEEEeC
Confidence            357777777888888777775442211  2222  113344433  3333333322              656 899999


Q ss_pred             CCchhHHHHHHHcCCCCCCeEEeeC-C-CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHH
Q psy12303        176 QCHYSVRSCAAVCGLGTDNCVEVPS-D-KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADIC  250 (480)
Q Consensus       176 ~~h~s~~~~~~~~g~~~~~v~~v~~-~-~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~  250 (480)
                      ++|+.+...++..|.   +++.+|. + +++.+|++.+++.+++.   ..++++++.++++||||.+.+   +++|+++|
T Consensus       150 P~y~~y~~~~~~~g~---~~~~v~l~~~~~~~~d~~~l~~~l~~~---~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a  223 (423)
T PLN02397        150 PTWGNHHNIFRDAGV---PVRTYRYYDPKTRGLDFDGLLEDLKAA---PDGSFVLLHACAHNPTGVDPTPEQWEQISDLI  223 (423)
T ss_pred             CCchhHHHHHHHcCC---eEEEeecccCcCCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Confidence            999999999999998   7888887 3 34789999999888643   123789999999999999965   67788899


Q ss_pred             HHcCcEEEeeccccccccccc--cccC-cccCCCCCCccceeCccccCCC-cccceEEE--EeCchhhHhhhcCCccccc
Q psy12303        251 QKYNMWLHVDAAWGGGLLLSK--KYRH-PRLTGIERADSVTWNPHKLMGT-LLQCSTIH--FKQDGLLISCNQMSAEYLF  324 (480)
Q Consensus       251 ~~~~~~l~vD~a~~~~~~~~~--~~~~-~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~--~~~~~~~~~~~~~~~~~l~  324 (480)
                      ++||+++++|++|........  .... ........--+++.|++|.++. +..+|+++  ..+...+............
T Consensus       224 ~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~  303 (423)
T PLN02397        224 KSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIAR  303 (423)
T ss_pred             HhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            999999999999988764210  0000 0111110112556699999994 57899985  3344332211100000000


Q ss_pred             ccccccCcccCCCCccccCCCCCCchHHHHHHHHhcH--------HHHHHHHHHHHHHHHHHHHHHhcCCCC----eEEe
Q psy12303        325 MQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGD--------EGFEKQIDRLMELAEYMVKKIKSMPDK----FYLI  392 (480)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~--------~~~~~~~~~~~~l~~~l~~~l~~~~~g----~~~~  392 (480)
                      ...               .+  ...+...++...+..        +.++++.++..+.++.+.+.|++ + +    +.+ 
T Consensus       304 ~~~---------------~~--~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~-~-~~~~~~~~-  363 (423)
T PLN02397        304 PMY---------------SN--PPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEA-R-GSPGDWSH-  363 (423)
T ss_pred             ccc---------------CC--CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-CCCCCCCc-
Confidence            000               00  111222222222211        22567778888999999999998 5 5    554 


Q ss_pred             cCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHH
Q psy12303        393 LEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTE  472 (480)
Q Consensus       393 ~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~  472 (480)
                      ..|+.+.++|.-.    .               .++.++|.++..+++..      .+  |+++.+  .+++++++++++
T Consensus       364 ~~p~gg~fl~~~l----~---------------~~~~~~Ll~~~~V~v~~------~~--Ri~~~~--~~~~~i~~~~~~  414 (423)
T PLN02397        364 ITKQIGMFSFTGL----N---------------KEQVDRMTKEYHIYMTR------DG--RISMAG--LSSKNVPYLADA  414 (423)
T ss_pred             ccCCceEEEecCC----C---------------HHHHHHHHHhCCEEECC------CC--eEEEee--CCHHHHHHHHHH
Confidence            3588888877321    1               23556665554454432      23  998543  589999999999


Q ss_pred             HHHhhc
Q psy12303        473 MDRLGH  478 (480)
Q Consensus       473 l~~~~~  478 (480)
                      |+++++
T Consensus       415 i~~~~~  420 (423)
T PLN02397        415 IHAVVT  420 (423)
T ss_pred             HHHHHh
Confidence            998865

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.76  E-value=1.1e-15  Score=150.47  Aligned_cols=292  Identities=15%  Similarity=0.083  Sum_probs=172.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      ..++.++.+.++   +.+...++|++|||+||..|++.++..       .|     ++.+|......|.+...++...|.
T Consensus        69 ~~~~~~la~~l~---~~~~~~~~~~~SGseA~~~Al~~ar~~-------~~-----~~~vv~~~~~yHg~~~~~~~~~~~  133 (375)
T PRK04260         69 NSLQEEVAQKLI---GDKDYLAFFCNSGAEANEAAIKIARKA-------TG-----KQEIITFQNSFHGRTFGSMSATGQ  133 (375)
T ss_pred             CHHHHHHHHHHh---cCcCCEEEEcCccHHHHHHHHHHHHHh-------cC-----CCeEEEECCCcCcccHHHHhccCC
Confidence            445555444332   222224689999999999999999763       11     133555667779887777655443


Q ss_pred             CCC---------CeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEE
Q psy12303        191 GTD---------NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWL  257 (480)
Q Consensus       191 ~~~---------~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l  257 (480)
                      ...         .+...+     ..|++++++.++++      +++|+++.+++++|.+.+    +++|.++|+++|+++
T Consensus       134 ~~~~~~~~~~~~~~~~~~-----~~dl~~l~~~l~~~------~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~  202 (375)
T PRK04260        134 DKIKDGFGDGVPHFSYAI-----FNDLNSVKALVNKN------TAAVMLELVQGESGVLPADKDFVKALADYCQETGILL  202 (375)
T ss_pred             cccCCCCCCCCCCeEEeC-----CCCHHHHHHhcCCC------eEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence            110         111111     13889999888543      789999999999998855    899999999999999


Q ss_pred             EeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCC
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  337 (480)
                      ++|++|.+.......... ...++ ..|++  +++|.++.+.+.|+++.++ +........  .+.             .
T Consensus       203 i~De~~~g~g~~g~~~~~-~~~~~-~pdi~--t~sK~l~~G~~ig~~~~~~-~~~~~~~~~--~~~-------------~  262 (375)
T PRK04260        203 IVDEVQTGMGRTGKLYAF-EHYGI-EPDIF--TLAKGLANGVPVGAMLAKS-SLGGAFGYG--SHG-------------S  262 (375)
T ss_pred             EEechhhCCCcccchhhh-HhhCC-CCCEE--EecccccCCcceEEEEEcH-HHHhhcCCC--CCC-------------C
Confidence            999999764332211111 12334 46765  4789998667889998764 333221100  000             0


Q ss_pred             CccccCCCCCCchHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhh
Q psy12303        338 DKVIQCGRHNDIFKLWLQWRAKGDEG-FEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEK  416 (480)
Q Consensus       338 ~~~~~~~r~~~~l~~~~~l~~~g~~~-~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~  416 (480)
                      ++   .+.+....++...+..+..+. .++..+....+.+.+.+.+.+ .+.+.-+. .....+.+.+ +..        
T Consensus       263 t~---~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~-~~g~~~~~~~-~~~--------  328 (375)
T PRK04260        263 TF---GGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQD-KETVTTVR-GLGYMIGIET-TAD--------  328 (375)
T ss_pred             CC---CcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh-CCCeeEEe-ccceEEEEEe-cCc--------
Confidence            00   111122233334444332222 233334444444555555555 33333221 1222333322 111        


Q ss_pred             HHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        417 RLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       417 ~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                              ..++.+.+.+.|..+...    + .+.+|++ ++..++++||+++++.|+++
T Consensus       329 --------~~~~~~~l~~~Gi~v~~~----~-~~~lR~~-~~~~~t~~~i~~~l~~l~~~  374 (375)
T PRK04260        329 --------LSQLVEAARDKGLIVLTA----G-TNVIRLL-PPLTLTKEEIEQGIAILSEV  374 (375)
T ss_pred             --------HHHHHHHHHhCCCEEecC----C-CCEEEEc-CCCccCHHHHHHHHHHHHHh
Confidence                    235678888899655332    3 4789999 88889999999999999875

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.76  E-value=2.7e-15  Score=149.57  Aligned_cols=315  Identities=15%  Similarity=0.074  Sum_probs=185.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG  191 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~  191 (480)
                      +...++.+.++++++.....+.|+++||+|+..|++.||..       .|.     +.++-.....|.....+....|..
T Consensus        84 ~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~-------tgr-----~~ii~~~~~yHG~t~~a~s~~~~~  151 (443)
T PRK08360         84 VEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAY-------TKR-----RKILSYLRSYYGSTYGAMSLTGLD  151 (443)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHh-------cCC-----CeEEEEeCCcCCcCHHHHHhcCCC
Confidence            44556777888887654357999999999999999999874       221     223344445676655555544421


Q ss_pred             ---------CCCeEEeeCCCCCC------------CCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHH
Q psy12303        192 ---------TDNCVEVPSDKRGR------------LIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEI  246 (480)
Q Consensus       192 ---------~~~v~~v~~~~~~~------------~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I  246 (480)
                               ...+.++|.....+            -+++.+++.++... .+..+++|+++..++++|.+.|    +++|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l  230 (443)
T PRK08360        152 FPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEV-YAEGVAALFAEPIQGDAGMIVPPEDYFKKL  230 (443)
T ss_pred             cccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhcc-CCCCeEEEEECCccCCCCCcCCCHHHHHHH
Confidence                     11345555432111            12334555554311 1345899999988899998765    8999


Q ss_pred             HHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccc
Q psy12303        247 ADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQ  326 (480)
Q Consensus       247 ~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~  326 (480)
                      .++|++||+++++|++|+++......+.. ...++ ..|+++  +.|.++++++.|+++.+ ++........  .+..  
T Consensus       231 ~~l~~~~g~llI~DEv~~g~gr~G~~~a~-~~~~~-~pDiit--lsK~l~~G~pigav~~~-~~i~~~~~~~--~~~~--  301 (443)
T PRK08360        231 KKILDEHGILLVVDEVQSGLGRTGKWFAI-EHFGV-EPDIIT--LGKPLGGGLPISATIGR-AEIMDSLPPL--AHAF--  301 (443)
T ss_pred             HHHHHHcCCEEEEeccccCCCcCccchhh-hhcCC-CCCEEE--ecccccCCceeEEEEEc-HHHHhhhcCC--CCCC--
Confidence            99999999999999999976443322111 22344 568776  47999977788998865 4444332110  0000  


Q ss_pred             ccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeEEEEE
Q psy12303        327 DKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVNVSFW  403 (480)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~v~f~  403 (480)
                                   ++ ++.+....++..+++.+..+   +..++..++.++|.+.|++.   .+-+.-+ .....++.+.
T Consensus       302 -------------T~-~~~p~~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~v-rg~Gl~~gie  363 (443)
T PRK08360        302 -------------TL-SGNPVASAAALAVIEEIEEK---NLLKRAEKLGNYTKKRLEEMKKKHELIGDV-RGIGLMIGVD  363 (443)
T ss_pred             -------------CC-CcCHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHhCCCeeee-eccceEEEEE
Confidence                         00 11112233344444443222   35567777777777777651   2222111 2333444444


Q ss_pred             eecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        404 YLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       404 ~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +......... +      ......+...+.++|.++ ...   . .+.+|++ ++..+|++||+++++++++.++.
T Consensus       364 ~~~~~~~~~~-~------~~~~~~~~~~l~~~Gi~~-~~~---~-~~~lr~~-P~l~~t~~~id~~~~~l~~~l~~  426 (443)
T PRK08360        364 LVKDRETKER-A------YEEAAKVVWRAWELGLIV-TFF---S-GNVLRIQ-PPLTIEKEVLDEGLDILEEAIED  426 (443)
T ss_pred             EecCCcccCc-c------HHHHHHHHHHHHHCCeEE-eec---C-CCEEEEe-CCCCCCHHHHHHHHHHHHHHHHH
Confidence            4321100000 0      011246778888999543 321   2 4689999 99999999999999999987653

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.76  E-value=4.2e-15  Score=148.82  Aligned_cols=319  Identities=15%  Similarity=0.073  Sum_probs=188.6

Q ss_pred             HHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .+...++.+.++++++.. ...+.|+++||+|+..|++.||..       .|.     +.+|......|.....++...+
T Consensus        98 ~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~-------tgr-----~~ii~~~~~yHG~t~~al~~~~  165 (443)
T PRK06058         98 YEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSY-------TGR-----QAVVVFDHAYHGRTNLTMALTA  165 (443)
T ss_pred             CHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHh-------hCC-----CeEEEECCCcCcChHHHHhhcC
Confidence            355556778888887543 246899999999999999999864       221     3245555566777666665433


Q ss_pred             C--------C--CCCeEEeeCCCCCC------CC-HHHHHHHHHHHHH--CCCccEEEEeccCCCccccccC----hHHH
Q psy12303        190 L--------G--TDNCVEVPSDKRGR------LI-PSELERLVLERKA--KGDIPFFVNCTSGTTVLGAFDP----IEEI  246 (480)
Q Consensus       190 ~--------~--~~~v~~v~~~~~~~------~d-~~~L~~~i~~~~~--~~~~~~~v~~~~~~~~~G~~~~----l~~I  246 (480)
                      .        +  ...+..+|....++      .+ .+.+++.++...+  .+..+++|+++..+...|.+.|    +++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~l  245 (443)
T PRK06058        166 KSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPAL  245 (443)
T ss_pred             CCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHH
Confidence            1        1  11233343221111      11 1222222221111  1235889999988877787754    9999


Q ss_pred             HHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccc
Q psy12303        247 ADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQ  326 (480)
Q Consensus       247 ~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~  326 (480)
                      .++|++||+++|+|+++.++......+.. ...++ .+|++++  .|.++++++.|+++.++ ++.+....   ..... 
T Consensus       246 r~lc~~~gillI~DEV~tGfgRtG~~fa~-~~~gv-~PDiv~~--gK~l~~G~Pi~av~~~~-~i~~~~~~---~~~~~-  316 (443)
T PRK06058        246 LEWCRENGVVFIADEVQTGFARTGAWFAC-EHEGI-VPDLITT--AKGIAGGLPLSAVTGRA-EIMDAPHP---GGLGG-  316 (443)
T ss_pred             HHHHHHcCCEEEEeccccCCCcChhhhHH-HhcCC-CCCEEEE--cccccCCCccEEEEEcH-HHHhhccC---CCCCC-
Confidence            99999999999999999987554433333 33455 6799986  59998888899998754 34332211   00000 


Q ss_pred             ccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEec--CCceeEEEEE
Q psy12303        327 DKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD-KFYLIL--EPEMVNVSFW  403 (480)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~-g~~~~~--~~~~~~v~f~  403 (480)
                                   ++ .+.+....++.++|+.+..   .++.++..++.++|.+.|++ +. ...++.  ...+.++.+.
T Consensus       317 -------------T~-~gnpl~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~L~~-l~~~~~~i~~vrg~G~~~~i~  378 (443)
T PRK06058        317 -------------TY-GGNPVACAAALAAIETIEE---DDLVARARQIEALMTDRLRA-LAAEDDRIGDVRGRGAMIAIE  378 (443)
T ss_pred             -------------CC-CCCHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHH-HHhhCCcEEeeeccceEEEEE
Confidence                         00 1111222333333443322   24566777777888877765 31 112221  2444555555


Q ss_pred             eecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        404 YLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       404 ~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      +.+.... ..+.       +....+.+.+.++|.++..... .  .+++|+. ++..+|++||++++++|++.+++|
T Consensus       379 ~~~~~~~-~~~~-------~~~~~l~~~~~~~Gv~~~~~~~-~--~~~lr~~-Ppl~~t~~~i~~~~~~l~~~l~~~  443 (443)
T PRK06058        379 LVKPGTT-EPDA-------ELTKALAAAAHAAGVIVLTCGT-Y--GNVIRLL-PPLVIGDELLREGLDVLEAALADL  443 (443)
T ss_pred             EecCCCC-CCcH-------HHHHHHHHHHHHCCeEEeccCC-C--CCEEEEE-CCCccCHHHHHHHHHHHHHHHHhC
Confidence            5432111 0000       1134677888889955432211 1  3689998 899999999999999999988764

>KOG0634|consensus

Probab=99.76  E-value=1.2e-15  Score=142.09  Aligned_cols=333  Identities=14%  Similarity=0.131  Sum_probs=216.4

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHhCCCC---CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCc
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQIIGWQG---GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH  178 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~g~~~---~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h  178 (480)
                      ..|..+.+..++...+.+.....++.+.   .++++|+|.|.+...++++++++              |+ .|++...++
T Consensus        94 lQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~--------------gd-~vlie~~ty  158 (472)
T KOG0634|consen   94 LQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINR--------------GD-HVLIEEYTY  158 (472)
T ss_pred             hccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcC--------------CC-ceEEecccc
Confidence            3455555555555554443333344432   57999999999999999999984              34 899999999


Q ss_pred             hhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHC---CCccEE-EEeccCCCccccccCh---HHHHHHHH
Q psy12303        179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAK---GDIPFF-VNCTSGTTVLGAFDPI---EEIADICQ  251 (480)
Q Consensus       179 ~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~---~~~~~~-v~~~~~~~~~G~~~~l---~~I~~i~~  251 (480)
                      ++....++.+|+   +++.|+.|++| +++|.|++.+......   ..+|.+ -.+..++||||...++   ++|.++||
T Consensus       159 ~~AL~s~~a~gv---~~ipv~md~~G-i~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LAr  234 (472)
T KOG0634|consen  159 PSALQSMEALGV---KIIPVKMDQDG-IDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLAR  234 (472)
T ss_pred             hHHHHhccccCc---eEEeccccCCC-CCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHH
Confidence            999999999987   77888877665 8999999999865432   133544 4788899999999876   78999999


Q ss_pred             HcCcEEEeecccccccccc----ccccC-------------cccCC--CCCCccceeCccccCCCcccceEEEEeCchhh
Q psy12303        252 KYNMWLHVDAAWGGGLLLS----KKYRH-------------PRLTG--IERADSVTWNPHKLMGTLLQCSTIHFKQDGLL  312 (480)
Q Consensus       252 ~~~~~l~vD~a~~~~~~~~----~~~~~-------------~~~~~--~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~  312 (480)
                      +|++.++.|+.|....+..    .....             |...+  .++--+-.-|++|.+..+...|++... +..+
T Consensus       235 KyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~-~~~l  313 (472)
T KOG0634|consen  235 KYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGN-SLFL  313 (472)
T ss_pred             HcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecC-HHHH
Confidence            9999999999998765531    10000             11111  111111233678999977889998754 4344


Q ss_pred             HhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHH----HHHHHHHHHHHhcCCCC
Q psy12303        313 ISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRL----MELAEYMVKKIKSMPDK  388 (480)
Q Consensus       313 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~----~~l~~~l~~~l~~~~~g  388 (480)
                      +...... .                 .+.+....+...-+++.++.+|++|+.+.+.+.    ...+..+.+.|.+++|.
T Consensus       314 ~ril~~a-e-----------------~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~  375 (472)
T KOG0634|consen  314 KRILDLA-E-----------------VATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPK  375 (472)
T ss_pred             HHHhhhc-c-----------------eeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3322111 0                 011111224566788889999997766655544    45677778888886665


Q ss_pred             e-EEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC---C---cccEEEEecccCCC
Q psy12303        389 F-YLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN---D---LPNFFRNIISSAAV  461 (480)
Q Consensus       389 ~-~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~---~---~~~~~R~~~~~~~~  461 (480)
                      - -.+.+|..+++.+.-++-...+     ..+.++++...+...+.+.|+.++....+.   +   .+-++|+++. . .
T Consensus       376 ~~~~~~~P~aGmFiwv~i~~~~~~-----~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a-~-a  448 (472)
T KOG0634|consen  376 SVCEYHPPKAGMFIWVEIPYINFD-----TKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIA-F-A  448 (472)
T ss_pred             CeeEEecCCcceEEEEEecccccc-----cccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEee-c-C
Confidence            4 4446888898887666511111     111233344567778888887655432211   1   1349999943 3 3


Q ss_pred             CHHHHHHHHHHHHHhhcc
Q psy12303        462 TEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       462 t~~di~~~~~~l~~~~~~  479 (480)
                      ..+++++.++++...+++
T Consensus       449 ~~e~l~~g~~rf~~~ike  466 (472)
T KOG0634|consen  449 EPEKLDEGIERFGSVIKE  466 (472)
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            677888888888776654

>KOG1359|consensus

Probab=99.76  E-value=4.4e-16  Score=137.46  Aligned_cols=299  Identities=18%  Similarity=0.175  Sum_probs=206.9

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHc
Q psy12303        109 VFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVC  188 (480)
Q Consensus       109 ~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~  188 (480)
                      +...+.+.+...++++-+-++  .++.+++-.||.-++.+...              | +..|+..+..|.|+....+++
T Consensus       109 Gtq~iHk~LE~kiAqfh~rED--~ilypscfdANag~feail~--------------p-edAvfSDeLNhASIIdGirLc  171 (417)
T KOG1359|consen  109 GTQDIHKLLESKIAQFHGRED--TILYPSCFDANAGAFEAILT--------------P-EDAVFSDELNHASIIDGIRLC  171 (417)
T ss_pred             cchHHHHHHHHHHHHHhCCCc--eEEeccccccchHHHHHhcC--------------h-hhhhhccccccchhhhhhHHH
Confidence            345666777778999988765  78889999999988887754              4 337888899999998887776


Q ss_pred             CCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccc
Q psy12303        189 GLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLL  268 (480)
Q Consensus       189 g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~  268 (480)
                      ..            .+.+|+..|+..+.+..+  .+-++|+-...-++.|.+.|+++|..++++||+++.+|+||+.+.+
T Consensus       172 kr------------y~h~dv~~l~~~l~~a~k--~r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~  237 (417)
T KOG1359|consen  172 KR------------YRHVDVFDLEHCLISACK--MRLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFF  237 (417)
T ss_pred             hh------------hccchhHHHHHHHHHhhh--heEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceee
Confidence            52            234688888888775533  2367888888889999999999999999999999999999998876


Q ss_pred             cccc-ccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC
Q psy12303        269 LSKK-YRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN  347 (480)
Q Consensus       269 ~~~~-~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~  347 (480)
                      --.. .....+.-..++|++...+.|.+++  ..|.+......+.....+..-+|++...-.             ..--.
T Consensus       238 G~tGrGt~E~~~vm~~vdiinsTLgKAlGg--a~GGyttgp~~li~llrqr~RpylFSnslp-------------pavV~  302 (417)
T KOG1359|consen  238 GETGRGTAEEFGVMGDVDIINSTLGKALGG--ASGGYTTGPKPLISLLRQRSRPYLFSNSLP-------------PAVVG  302 (417)
T ss_pred             cCCCCChHHHhCCCCcceehhhhhhhhhcC--CCCCCccCChhHHHHHHhcCCceeecCCCC-------------hhhhh
Confidence            2211 1110222234789999999999985  245555566666666666677888764221             00001


Q ss_pred             CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHH
Q psy12303        348 DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPI  427 (480)
Q Consensus       348 ~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~  427 (480)
                      .+.+++..+..     -.+.+.+...+.+++++..+.  .|+.+.+.. . -+|-......              ++..+
T Consensus       303 ~a~ka~dllm~-----s~~~i~~~~a~~qrfr~~me~--aGftIsg~~-h-PI~pv~lGda--------------~lA~~  359 (417)
T KOG1359|consen  303 MAAKAYDLLMV-----SSKEIQSRQANTQRFREFMEA--AGFTISGAS-H-PICPVMLGDA--------------RLASK  359 (417)
T ss_pred             hhHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHh--cCceecCCC-C-CccceecccH--------------HHHHH
Confidence            23333333221     245567888899999999988  899986532 1 1121111100              11345


Q ss_pred             HHHHHHhcccEEEeee---eeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        428 LKGRMMQAGTMMVGYQ---PLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       428 i~~~l~~~g~~~~~~~---~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      ..+.|.++|..++...   ...+ ...+|+. .+..+|+||||++++++.++.+
T Consensus       360 ~ad~lLk~Gi~Vigfs~PvVP~g-kariRVq-iSAaHt~edid~~i~Af~~vgr  411 (417)
T KOG1359|consen  360 MADELLKRGIYVIGFSYPVVPKG-KARIRVQ-ISAAHTEEDIDRLIEAFSEVGR  411 (417)
T ss_pred             HHHHHHhcCceEEeecCCcCCCC-ceEEEEE-EehhcCHHHHHHHHHHHHHHHH
Confidence            6788889997655432   2234 5688988 8899999999999999988765

>PRK06105 aminotransferase; Provisional

Probab=99.76  E-value=2.2e-15  Score=150.91  Aligned_cols=327  Identities=14%  Similarity=0.089  Sum_probs=190.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCce-EEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQL-VMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~-~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .+.+.++.+.|+++++.+-..+.|+++||+|+..|++.++...    ...|.   +++. +|......|.....+....+
T Consensus        91 ~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~----~~~g~---t~r~~il~~~~~yHG~t~~a~s~t~  163 (460)
T PRK06105         91 HGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYN----NALGR---PEKKKIISRQRGYHGVTIASASLTG  163 (460)
T ss_pred             CHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHH----HhcCC---CCCcEEEEecCccCCcchhheeccC
Confidence            4555667788888875433569999999999999999998531    11222   2222 44455666776655544333


Q ss_pred             CC---------CCCeEEeeCCCCCCC-------------CHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----h
Q psy12303        190 LG---------TDNCVEVPSDKRGRL-------------IPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----I  243 (480)
Q Consensus       190 ~~---------~~~v~~v~~~~~~~~-------------d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l  243 (480)
                      ..         ...+..+|.....+.             ..+++++.+...  ....+++|++...+...|.+.+    +
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~--~~~~iAavIvEPiqg~gG~~~~~~~yl  241 (460)
T PRK06105        164 LPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAE--GPDTIAAFIGEPVMGAGGVIVPPKTYW  241 (460)
T ss_pred             CcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHc--CCCceEEEEEccccCCCCCccCCHHHH
Confidence            21         012333433211111             135566666421  2235899999999888898877    9


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCc--
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSA--  320 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~--  320 (480)
                      +++.++|++||+++++|+++.++......+.. ...++ .+|+++  +.|.++++ .+.|+++.++ ++.........  
T Consensus       242 ~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~-~~~~v-~PDi~~--~gK~lggG~~P~~av~~~~-~i~~~~~~~~~~~  316 (460)
T PRK06105        242 EKIQAVLRKYDILLVADEVICGFGRTGNMFGC-ETFGI-KPDILV--MSKQLSSSYQPLSAVLMNE-KVYDPIADESGKI  316 (460)
T ss_pred             HHHHHHHHHcCCeEEEeccccCCCcCchhhhH-HhcCC-CCCeee--eecccccCcccceEEEEcH-HHHHHHhcccccC
Confidence            99999999999999999999776554444333 34456 689888  56999876 3788888754 33332211100  


Q ss_pred             ccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC--Ccee
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE--PEMV  398 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~--~~~~  398 (480)
                      ..+.+.          .++   .+.+....++.++|+.+-.   ++..++..++.++|.+.|++ +....++.+  -.+.
T Consensus       317 ~~~~h~----------~T~---~gnpl~~aaa~a~L~~i~~---~~l~~~v~~~g~~l~~~L~~-l~~~~~v~~vrG~Gl  379 (460)
T PRK06105        317 GTFGHG----------FTA---SGHPVAAAVALENLAIIEE---RDLVGNAAERGARLQARLRA-LADHPLVGEVRGVGL  379 (460)
T ss_pred             cccccC----------CCC---CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHH-hhcCCCeEEEEecce
Confidence            000000          000   1111223333344444432   34567888888888888877 432222222  1223


Q ss_pred             EEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        399 NVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       399 ~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      +..+.+.+..........    .......+...+.++|.++ .+.     .+.+|++ +....|++||+++++.+++.++
T Consensus       380 ~~gie~~~~~~~~~~~~~----~~~~a~~i~~~~~~~Gvl~-~~~-----g~~i~l~-Ppl~it~~eid~~~~~l~~~l~  448 (460)
T PRK06105        380 IAAVELVADKATKTPFEP----PGKVGARANAAAHEHGVIS-RAM-----GDTLAFC-PPLIITAAQVDEMVDRFGRALD  448 (460)
T ss_pred             EEEEEEecCcccCCCCCc----hhHHHHHHHHHHHHCCeEE-Eec-----CCEEEEE-CCCccCHHHHHHHHHHHHHHHH
Confidence            334444322110000000    0011245778888888554 321     3589999 8888999999999999988775


Q ss_pred             c
Q psy12303        479 D  479 (480)
Q Consensus       479 ~  479 (480)
                      +
T Consensus       449 ~  449 (460)
T PRK06105        449 D  449 (460)
T ss_pred             H
Confidence            4

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.76  E-value=6.9e-17  Score=158.77  Aligned_cols=242  Identities=13%  Similarity=0.129  Sum_probs=164.7

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH--
Q psy12303        107 APVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC--  184 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~--  184 (480)
                      .|....+|+.    ++++.|...  ++.++||+.|+.+++.++..              ||+ +|+++...|.+....  
T Consensus        60 nPtv~~lE~~----la~leg~~~--av~~~SG~aAi~~al~all~--------------~GD-~VI~~~~~Y~~T~~~~~  118 (432)
T PRK06702         60 NPTLAAFEQK----LAELEGGVG--AVATASGQAAIMLAVLNICS--------------SGD-HLLCSSTVYGGTFNLFG  118 (432)
T ss_pred             CcHHHHHHHH----HHHHhCCCc--EEEECCHHHHHHHHHHHhcC--------------CCC-EEEECCCchHHHHHHHH
Confidence            4666666665    888888865  78999999999999987643              556 788888888766655  


Q ss_pred             --HHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecc
Q psy12303        185 --AAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAA  262 (480)
Q Consensus       185 --~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a  262 (480)
                        +..+|+   ++.++..    .+|+++++++|+++      |++|++++++||++.+.|+++|+++|+++|+++++|++
T Consensus       119 ~~l~~~Gi---~v~~vd~----~~d~~~l~~~I~~~------Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T  185 (432)
T PRK06702        119 VSLRKLGI---DVTFFNP----NLTADEIVALANDK------TKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNT  185 (432)
T ss_pred             HHHHHCCC---EEEEECC----CCCHHHHHHhCCcC------CeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECC
Confidence              566677   7777743    46999999999876      89999999999999999999999999999999999999


Q ss_pred             ccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCch--hhH----hhhcCCccccccccc-ccC-cc
Q psy12303        263 WGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDG--LLI----SCNQMSAEYLFMQDK-LYD-VR  333 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~--~~~----~~~~~~~~~l~~~~~-~~~-~~  333 (480)
                      ++.+.+ .....+       +||+++.|..||+++.. ..|.+++....  +..    ........+...... ... ..
T Consensus       186 ~~tP~~-~~pl~~-------GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~  257 (432)
T PRK06702        186 LATPYL-CQAFEH-------GANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAA  257 (432)
T ss_pred             CCchhh-CChhhc-------CCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhh
Confidence            975433 223344       89999999999998763 34444442221  110    000000000000000 000 00


Q ss_pred             -c--CCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        334 -Y--DTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       334 -~--~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                       .  .........+.......+|+.++.  .+.+..++++..+++..+.+.|++ +|.++.+.
T Consensus       258 ~~~~~~~~~~~~~g~~~sp~~a~l~~rg--L~Tl~lR~~r~~~Na~~la~~L~~-~p~V~~V~  317 (432)
T PRK06702        258 YIVKARVQLLRDYGNCMSPFNAYISNIG--LETLHLRMERHSENALAVAKWLAD-HERIEWVN  317 (432)
T ss_pred             HHHHHHHHHHHHccCCCCHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHHHHHh-CCCcceEE
Confidence             0  000000112233567778877665  567888999999999999999999 88876543

>PRK05965 hypothetical protein; Provisional

Probab=99.75  E-value=3.4e-15  Score=149.61  Aligned_cols=328  Identities=12%  Similarity=0.050  Sum_probs=193.2

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCce-EEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQL-VMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~-~vl~~~~~h~s~~~~~~~~g  189 (480)
                      ++...++.+.+++++.-+-..+.|+++||+|+..|++.||...    ..+|.   +++. +|......|.....+....+
T Consensus        89 ~~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~----~~~g~---~~r~kii~~~~~YHG~t~~a~s~t~  161 (459)
T PRK05965         89 SEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYW----NATGR---PSKKQFISLERGYHGSSSVGAGLTA  161 (459)
T ss_pred             CHHHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHH----HhcCC---CCccEEEEecCCcCcccHHHHHhcC
Confidence            3444567777888764333569999999999999999998742    12232   2232 44455556766554444433


Q ss_pred             C-------C--CCCeEEeeCCCCC----CCCH--------HHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hH
Q psy12303        190 L-------G--TDNCVEVPSDKRG----RLIP--------SELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IE  244 (480)
Q Consensus       190 ~-------~--~~~v~~v~~~~~~----~~d~--------~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~  244 (480)
                      .       +  ...+..+|.....    .-|.        +++++.++..  ....+++|+++..+...|.+.|    ++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAAvIvEPiqg~gG~~~p~~~yl~  239 (459)
T PRK05965        162 LPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAEL--GADNVAAFFCEPIQGSGGVIVPPKGWLK  239 (459)
T ss_pred             CchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEeccccCCCCccCCHHHHH
Confidence            2       1  1123344432111    1132        4566666532  1135899999999888887754    89


Q ss_pred             HHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCc--c
Q psy12303        245 EIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSA--E  321 (480)
Q Consensus       245 ~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~--~  321 (480)
                      +|.++|++||+.+|+|+++.|+......+.. ...++ .+|++++  .|.+++++ +.|+++++++ +.........  .
T Consensus       240 ~lr~lc~~~gillI~DEV~tGfGRtG~~~a~-~~~gv-~PDiv~~--gKgl~gG~~Pi~av~~~~~-i~~~~~~~~~~~~  314 (459)
T PRK05965        240 AMREACRELGILFVADEVITGFGRTGPLFAC-EAEGV-VPDLMTV--AKGLTSGYVPMGAVLMSDH-VYQGIADGAGAAA  314 (459)
T ss_pred             HHHHHHHHcCCEEEEechhccCccCchhhhH-hhcCC-CCCeEEe--chhhccCCcceeEEEEcHH-HHHHHhccccccc
Confidence            9999999999999999999988665554444 44566 6999994  69999885 8999987654 3332211000  0


Q ss_pred             cccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC--ceeE
Q psy12303        322 YLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP--EMVN  399 (480)
Q Consensus       322 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~--~~~~  399 (480)
                      .+.+.          .++   .+.+....++.++|+.+-.   ++..++..++.++|.+.|++ +....++.+.  .+.+
T Consensus       315 ~~~h~----------~T~---~gnpl~~Aaa~a~L~~l~~---~~l~~~~~~~g~~l~~~l~~-l~~~~~v~~vrG~Gl~  377 (459)
T PRK05965        315 PVGHG----------YTY---SAHPVSAAVGLEVLRLYHE---GGLLANGQKAGPRFAAGLDA-LRAHPLVGDVRGRGLL  377 (459)
T ss_pred             ccccc----------CCC---CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHh-hccCCCEEEEeecceE
Confidence            00010          000   1222223333344444322   34567778888888888877 4322222221  2233


Q ss_pred             EEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        400 VSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       400 v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.+.+........... ..   ..+...+.+.+.++|.++...    + .+++|++ +...+|++||+++++.+.+.+++
T Consensus       378 ~gie~~~~~~~~~~~~-~~---~~~~~~i~~~~~~~Gll~~~~----g-~~~i~~~-PpL~it~~ei~~~~~~l~~~l~~  447 (459)
T PRK05965        378 GALELVADKATKTPFD-AA---LDPADRIFDRAYANGLVFRAF----G-DGVLGFA-PALCCTEGEFDLIFERTRKTLDD  447 (459)
T ss_pred             EEEEEeccccccCCCC-ch---hHHHHHHHHHHHhCCeEEEec----C-CcEEEEE-CCCcCCHHHHHHHHHHHHHHHHH
Confidence            3343332110000000 00   012346778888999654321    3 4689999 99999999999999999987754

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.75  E-value=7.4e-17  Score=160.15  Aligned_cols=235  Identities=18%  Similarity=0.187  Sum_probs=156.7

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhH----HHHHHHcCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV----RSCAAVCGL  190 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~----~~~~~~~g~  190 (480)
                      .++.+.++++.|.+.  .++++||+.|+..++.++..              ||+ .|+++...|...    ...+...|+
T Consensus        60 ~~le~~lA~l~g~~~--~v~~~sG~~Ai~~al~~l~~--------------~Gd-~Vl~~~~~y~~t~~~~~~~~~~~G~  122 (418)
T TIGR01326        60 DVLEQRIAALEGGVA--ALAVASGQAAITYAILNLAQ--------------AGD-NIVSSSYLYGGTYNLFKHTLKRLGI  122 (418)
T ss_pred             HHHHHHHHHHhCCCe--EEEEccHHHHHHHHHHHHhC--------------CCC-EEEEECCCcHHHHHHHHHHHHHcCc
Confidence            345566999999754  89999999999999987754              456 677777776543    334556676


Q ss_pred             CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccc
Q psy12303        191 GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLS  270 (480)
Q Consensus       191 ~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~  270 (480)
                         +++.++.+     |+++++++++++      +++|++++++|++|.+.|+++|.++|+++|+++++|++|+.+....
T Consensus       123 ---~v~~v~~~-----d~~~l~~~l~~~------t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~~~  188 (418)
T TIGR01326       123 ---EVRFVDPD-----DPEEFEKAIDEN------TKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLCR  188 (418)
T ss_pred             ---EEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhcCC
Confidence               77777753     899999998765      8899999999999999999999999999999999999998663222


Q ss_pred             ccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCccccccccccc-CcccC--CC---------
Q psy12303        271 KKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLY-DVRYD--TG---------  337 (480)
Q Consensus       271 ~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~--~~---------  337 (480)
                      + ...       ++|+++.|++|+++++ ...|++++..........  ....+......+ ...+.  .+         
T Consensus       189 ~-l~~-------g~Divv~S~sK~l~g~G~~lGg~v~~~~~~~~~~~--~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~  258 (418)
T TIGR01326       189 P-IDH-------GADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANG--RFPLFTTPDPSYHGLVFTETFGNPAFIVKAR  258 (418)
T ss_pred             c-hhc-------CCeEEEECccccccCCccceEEEEEeccccccccc--ccccccCCCCccccchhhhhhchhhHHHHHH
Confidence            1 223       7899999999999874 447777775543221100  000000000000 00000  00         


Q ss_pred             -CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        338 -DKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       338 -~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                       .+....|-......+|..++  |.+.+..++++..+++..+.+.|.+ .|++..+.
T Consensus       259 ~~~~~~~G~~~~p~~a~~~~~--~l~tl~~R~~~~~~~a~~la~~L~~-~~~V~~V~  312 (418)
T TIGR01326       259 VQLLRDLGAALSPFNAFLLLQ--GLETLSLRMERHVENALKVAEFLEA-HPKVAWVN  312 (418)
T ss_pred             HHHHHhcCCCCCHHHHHHHHC--CcccHHHHHHHHHHHHHHHHHHHHh-CCCccEEE
Confidence             00000122234456665554  4566777778888889999999999 88876543

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.75  E-value=1.1e-15  Score=152.58  Aligned_cols=314  Identities=15%  Similarity=0.127  Sum_probs=184.2

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHc--
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVC--  188 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~--  188 (480)
                      .+.+.++.+.+++.+.. .+.+.|+++||||++.|++.||..       .|.     +.+|......|..........  
T Consensus       138 ~~~~~~lAe~l~~~~p~-~~~v~f~~SGsEA~e~AlklAR~~-------tgr-----~~Ii~~~g~YHG~~~~~~~~~~~  204 (474)
T PLN02482        138 CLLENVLAEMVIDAVPS-VEMVRFVNSGTEACMGVLRLARAY-------TGR-----EKIIKFEGCYHGHADSFLVKAGS  204 (474)
T ss_pred             CHHHHHHHHHHHHhCCC-CCEEEEeCChHHHHHHHHHHHHHh-------cCC-----CEEEEECCccCCCcchhhhhcCC
Confidence            46677788888888753 247999999999999999999875       221     223444555666432221111  


Q ss_pred             CC---------CC-----CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHH
Q psy12303        189 GL---------GT-----DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADIC  250 (480)
Q Consensus       189 g~---------~~-----~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~  250 (480)
                      +.         +.     ..+..+|.+     |+++|++.+++.   +..+++|+++......|.+.|    +++|.++|
T Consensus       205 ~~~~~~~~~~~g~~~~~~~~~~~~~~n-----d~~~l~~~l~~~---~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc  276 (474)
T PLN02482        205 GVATLGLPDSPGVPKAATSATLTAPYN-----DLEAVKKLFEAN---KGEIAAVILEPVVGNSGFIVPKKEFLEGLREIT  276 (474)
T ss_pred             CccccCCCCCCCCCCCCCCCeEEecCC-----ChHHHHHHHHhC---CCceEEEEECCCCCCCCCcCCCHHHHHHHHHHH
Confidence            10         00     012233333     788999888642   344889999999999998876    57899999


Q ss_pred             HHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccccccc
Q psy12303        251 QKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLY  330 (480)
Q Consensus       251 ~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  330 (480)
                      ++||+++++|+++.|+ ........ ...++ .+|+++  +.|.+++++++|++.. ++++++........+..+     
T Consensus       277 ~~~g~lLI~DEV~tGf-R~g~~ga~-~~~gv-~PDi~t--~gK~lggG~Pigav~g-~~ei~~~~~~~~~~~~~~-----  345 (474)
T PLN02482        277 KENGALLVFDEVMTGF-RIAYGGAQ-EYFGI-TPDLTT--LGKVIGGGLPVGAYGG-RREIMEMVAPAGPMYQAG-----  345 (474)
T ss_pred             HHcCCEEEEeccccCe-ecCcchHh-HHhCC-CCCEEE--ecchhhCCCceEEEEE-cHHHHHhhccCCCccccc-----
Confidence            9999999999999876 33322222 33455 689877  5799998888999965 445544332111111111     


Q ss_pred             CcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEecCCceeEEEEEeecC
Q psy12303        331 DVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP---DKFYLILEPEMVNVSFWYLPT  407 (480)
Q Consensus       331 ~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~---~g~~~~~~~~~~~v~f~~~~~  407 (480)
                             ++   .+.+....+..++|+.+..   .+..++..++.++|.+.|++ .   .++.++.....+++.+.+...
T Consensus       346 -------T~---~gnpl~~aAala~L~~l~~---~~~~~~~~~~g~~l~~~L~~-l~~~~g~~~~~~~v~g~~gi~f~~~  411 (474)
T PLN02482        346 -------TL---SGNPLAMTAGIHTLKRLQQ---PGTYEYLDKITKKLIQGILE-AGKKAGHEMCGGYISGMFGFFFTEG  411 (474)
T ss_pred             -------Cc---chhHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHH-HHHhcCCCEEEcccceEEEEEEecC
Confidence                   00   0111222334444544422   34567777788888887765 3   123332112223444444322


Q ss_pred             ccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        408 RVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       408 ~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      ......+....+  ......+.+.+.++|.++ .+....   .  +  +++..+|++|||++++++++.++++
T Consensus       412 ~~~~~~~~~~~d--~~~~~~~~~~l~~~Gv~~-~~~~~~---~--~--~psl~ht~~dId~~l~al~~~l~~~  474 (474)
T PLN02482        412 PVYNFADAKKSD--TAKFARFHRGMLEEGVYL-APSQFE---A--G--FTSLAHTEEDIDFTIAAAERVLARI  474 (474)
T ss_pred             CccChhhhccCC--HHHHHHHHHHHHHCCeEE-eccCCC---C--C--cCCCCCCHHHHHHHHHHHHHHHHhC
Confidence            211100000000  011245678888888543 331111   1  1  2678889999999999999988764

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.75  E-value=2.1e-15  Score=150.49  Aligned_cols=322  Identities=14%  Similarity=0.096  Sum_probs=186.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCc-eEEEecCCCchhHHHHHHHcCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQ-LVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~-~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      +...++.+.++++++.+-..+.|+++||+|+..|++.+|...    ..+|.   +++ .+|......|.....+....|.
T Consensus        92 ~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~----~~~g~---~~r~~ii~~~~~yHG~t~gals~~~~  164 (445)
T PRK09221         92 PLAFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYH----RARGQ---GTRTRLIGRERGYHGVGFGGISVGGI  164 (445)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHH----HhcCC---CCCcEEEEECCCcCccchhhhccCCC
Confidence            445567777888875333469999999999999999998741    11221   112 2445555567655444433331


Q ss_pred             C---------CCCeEEeeCCC---C--CCC--------CHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hH
Q psy12303        191 G---------TDNCVEVPSDK---R--GRL--------IPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IE  244 (480)
Q Consensus       191 ~---------~~~v~~v~~~~---~--~~~--------d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~  244 (480)
                      .         ...+..+|...   .  +..        ..+++++.++..  ....+++|+++..+...|.+.|    ++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAavi~Epv~g~~G~~~~~~~yl~  242 (445)
T PRK09221        165 VNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALH--DASTIAAVIVEPMAGSAGVLVPPKGYLQ  242 (445)
T ss_pred             hhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEecccCCCCcccCCHHHHH
Confidence            1         01233344321   0  000        134666666532  1134889999999999999988    99


Q ss_pred             HHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccc
Q psy12303        245 EIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYL  323 (480)
Q Consensus       245 ~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l  323 (480)
                      +|.++|++||+++++|++++++......+.. ...++ ..|+++  +.|.++++ .+.|.++.++ +..+.... .+.+.
T Consensus       243 ~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~-~~~gv-~PDi~~--~gK~l~gG~~Pi~av~~~~-~i~~~~~~-~~~~~  316 (445)
T PRK09221        243 RLREICDKHGILLIFDEVITGFGRLGAAFAA-ERFGV-TPDIIT--FAKGLTNGAIPMGAVIASD-EIYDAFMQ-GPEYA  316 (445)
T ss_pred             HHHHHHHHcCCEEEEeehhhCCCcCchhhHH-HhcCC-CCCEEE--eccccccCcccceeeEEcH-HHHHhhcc-Ccccc
Confidence            9999999999999999999765443333222 23344 579887  56888765 4577777654 44433221 11110


Q ss_pred             cccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC--ceeEEE
Q psy12303        324 FMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP--EMVNVS  401 (480)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~--~~~~v~  401 (480)
                      ..       .....  ++ .+.+.....+.++|+.+..+   ...++..++.++|++.|++ +.+...+.+.  ...+..
T Consensus       317 ~~-------~~~~~--T~-~~~pl~~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~l~~-l~~~~~v~~vrg~Gl~~~  382 (445)
T PRK09221        317 IE-------FFHGY--TY-SAHPVACAAGLATLDIYREE---DLFERAAELAPYFEDAVHS-LKGLPHVIDIRNIGLVAG  382 (445)
T ss_pred             cc-------ccccc--CC-CcCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHh-hccCCCEEEEecCceEEE
Confidence            00       00000  11 12112223333444444332   4568888899999998887 5332222221  112222


Q ss_pred             EEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        402 FWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       402 f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.+.+.....  .        .....+.+.+.++|.++ ..    . .+.+|++ ++..+|++||+++++.|++.+++
T Consensus       383 v~~~~~~~~~--~--------~~~~~~~~~~~~~Gv~~-~~----~-~~~lr~~-Ppl~~t~~eid~~~~~l~~~l~~  443 (445)
T PRK09221        383 IELAPRPGAP--G--------ARGYEAFMKCFEKGLLV-RY----T-GDTIALS-PPLIIEKAQIDELVDALGDALRA  443 (445)
T ss_pred             EEEecccccc--c--------chHHHHHHHHHHCCeEE-ee----c-CCEEEEE-CCccCCHHHHHHHHHHHHHHHHh
Confidence            3332211000  0        00235678888888543 32    1 3689999 99999999999999999998765

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.75  E-value=1.9e-16  Score=161.81  Aligned_cols=312  Identities=17%  Similarity=0.120  Sum_probs=197.8

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH-HHHcCCCC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC-AAVCGLGT  192 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~-~~~~g~~~  192 (480)
                      -.+..+.+|+.||++. .-++++|+|.+|..++.++..              ||+ .|+++..+|-|+..+ +.+.|+  
T Consensus       176 i~eAq~~AA~~fgAd~-tyFlvNGTS~gn~a~i~a~~~--------------~Gd-~VLvdRN~HKSv~hgaLiLsGa--  237 (720)
T PRK13578        176 AKDAQKHAAKVFNADK-TYFVLNGTSASNKVVTNALLT--------------PGD-LVLFDRNNHKSNHHGALIQAGA--  237 (720)
T ss_pred             HHHHHHHHHHHhCCCc-eEEEeCChhHHHHHHHHHhcC--------------CCC-EEEeecccHHHHHHHHHHHcCC--
Confidence            3455677999999976 468889999999999888875              556 899999999999995 888888  


Q ss_pred             CCeEEeeCC--CC---CCCCHHH-----HHHHHHHH-HH--CCCcc-EEEEeccCCCccccccChHHHHHH-HHHcCcEE
Q psy12303        193 DNCVEVPSD--KR---GRLIPSE-----LERLVLER-KA--KGDIP-FFVNCTSGTTVLGAFDPIEEIADI-CQKYNMWL  257 (480)
Q Consensus       193 ~~v~~v~~~--~~---~~~d~~~-----L~~~i~~~-~~--~~~~~-~~v~~~~~~~~~G~~~~l~~I~~i-~~~~~~~l  257 (480)
                       ..++++..  +.   +.++++.     ++++|++. .+  +..+| ++++++++ |..|.+.++++|+++ ++.++ ++
T Consensus       238 -~PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p-TYdG~~ydi~~I~~~~~h~~~-~l  314 (720)
T PRK13578        238 -TPVYLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLG-TYDGTIYNARQVVDKIGHLCD-YI  314 (720)
T ss_pred             -eEEEeeccccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECC-CCcceeecHHHHHHHhhccCC-cE
Confidence             55666543  22   3456544     88888765 11  12234 89999999 678999999999999 68888 99


Q ss_pred             EeeccccccccccccccC-cccCCCCCCc----cceeCccccCCCcccceEEEEeCchh-----------hHhhh----c
Q psy12303        258 HVDAAWGGGLLLSKKYRH-PRLTGIERAD----SVTWNPHKLMGTLLQCSTIHFKQDGL-----------LISCN----Q  317 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~-~~~~~~~~~D----~~~~s~hK~~~~p~~~g~~~~~~~~~-----------~~~~~----~  317 (480)
                      |||+|||+...+.+.++. |....-.++|    +++-|.||.+.+-...+.+.+++...           +..+.    +
T Consensus       315 lvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v~~~r~~~al~m~qS  394 (720)
T PRK13578        315 LFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHAS  394 (720)
T ss_pred             EEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccCCHHHHHHHHHHHcC
Confidence            999999999877775321 1121223788    99999999999877888888866421           11110    1


Q ss_pred             CCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH-hcCCCCeEEecCCc
Q psy12303        318 MSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKI-KSMPDKFYLILEPE  396 (480)
Q Consensus       318 ~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l-~~~~~g~~~~~~~~  396 (480)
                      .+|.|+.                      ++++.+...+.. +..| +++.++..+++..+++.| +. +++++++.++.
T Consensus       395 TSPsY~L----------------------mASLDva~~~m~-~~~G-~~l~~~~i~~a~~~R~~l~~~-~~~~~~~~p~~  449 (720)
T PRK13578        395 TSPFYPL----------------------FAALDVNAKMHE-GESG-RRLWMECVKLGIEARKLILAR-CKLIRPFIPPV  449 (720)
T ss_pred             CChHHHH----------------------HHHHHHHHHHHH-HhhC-HHHHHHHHHHHHHHHHHHHHh-CCCeeeccccc
Confidence            1111110                      123333222211 1122 556677788888888888 66 78888774321


Q ss_pred             e---------------eEEEEEeecCcc----CC-------CchhhH---HHHhh---------hh-hHHHHHHHHhccc
Q psy12303        397 M---------------VNVSFWYLPTRV----RN-------MPHEKR---LNILG---------EI-TPILKGRMMQAGT  437 (480)
Q Consensus       397 ~---------------~~v~f~~~~~~~----~~-------~~~~~~---~~~l~---------~~-~~~i~~~l~~~g~  437 (480)
                      .               ..-||.+.|..-    .+       .+..++   ...++         .+ +..+.+.|.++| 
T Consensus       450 v~~~~~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~g-  528 (720)
T PRK13578        450 VDGKPWQDYPTEQIASDLRFFSFEPGEKWHGFEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENG-  528 (720)
T ss_pred             ccccccccCchhhhcccccccccccCccccccccccccccccCCceEEEEcCCcCcccccccccCccHHHHHHHHHHcC-
Confidence            1               111233332210    00       000000   00010         00 245667776775 


Q ss_pred             EEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        438 MMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       438 ~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      +.+..+.    .+.+-+. .++..|++++++++++|.++.
T Consensus       529 I~~E~~d----~~~vL~l-~s~g~t~~~~~~Lv~aL~~f~  563 (720)
T PRK13578        529 IVPEKCD----LNSILFL-LTPAEDMAKLQQLVAMLARFE  563 (720)
T ss_pred             CEEEecC----CCeEEEE-eCCCCCHHHHHHHHHHHHHHH
Confidence            4444432    3455554 678899999999999998763

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.75  E-value=1.2e-15  Score=155.79  Aligned_cols=310  Identities=16%  Similarity=0.178  Sum_probs=195.5

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      -.+..+.+|+.||++. .-++++|+|.+|..++.++..              ||+ .|+++..+|-|+..++.+.|+   
T Consensus       197 i~eAe~~aA~~fgAd~-tyfvvNGTS~~n~av~~a~~~--------------~Gd-~VLvdRN~HKSv~~aLilsga---  257 (713)
T PRK15399        197 HLEAEEYIARTFGAEQ-SYIVTNGTSTSNKIVGMYAAP--------------AGS-TLLIDRNCHKSLAHLLMMSDV---  257 (713)
T ss_pred             HHHHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHhcC--------------CCC-EEEeecccHHHHHHHHHHcCC---
Confidence            3445677999999976 467888889999999988865              556 899999999999999999998   


Q ss_pred             CeEEeeCCC--C---CCCCH-----HHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEE-Eeecc
Q psy12303        194 NCVEVPSDK--R---GRLIP-----SELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWL-HVDAA  262 (480)
Q Consensus       194 ~v~~v~~~~--~---~~~d~-----~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l-~vD~a  262 (480)
                      ..++++...  .   +.+++     +.++++|++..+. .+|+.++++++ |..|.+.++++|.++|   |+.+ |||+|
T Consensus       258 ~PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~-~~p~~vvit~p-TYdGi~yd~~~I~~~~---g~~~ilvDEA  332 (713)
T PRK15399        258 VPIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQA-QWPVHAVITNS-TYDGLLYNTDWIKQTL---DVPSIHFDSA  332 (713)
T ss_pred             eeEEecccccccCCcCCCChhhccHHHHHHHHHhCCCc-CCceEEEEECC-CCCceeeCHHHHHHHh---CCCEEEEecc
Confidence            556665432  2   34565     8888898765322 45689999999 7889999999999999   6665 79999


Q ss_pred             ccccccccccccC-cccCCCCCCccc---eeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCC
Q psy12303        263 WGGGLLLSKKYRH-PRLTGIERADSV---TWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGD  338 (480)
Q Consensus       263 ~~~~~~~~~~~~~-~~~~~~~~~D~~---~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  338 (480)
                      |++...+.+.++. ..+.+..++|.+   +-|.||.+.+-...+.+.++..-......   ..|...+            
T Consensus       333 hgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~vd~~~~n---~a~~m~~------------  397 (713)
T PRK15399        333 WVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFN---EAFMMHT------------  397 (713)
T ss_pred             chhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCCCCHHHHH---HHHHHHc------------
Confidence            9998877765431 022222256777   89999999988889999886531111110   1111110            


Q ss_pred             ccccCCCC----CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC------eEEecCCce-eEEEEEeecC
Q psy12303        339 KVIQCGRH----NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDK------FYLILEPEM-VNVSFWYLPT  407 (480)
Q Consensus       339 ~~~~~~r~----~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g------~~~~~~~~~-~~v~f~~~~~  407 (480)
                          .+.+    ++++.....+.. +..| +++.++..+++..+++.|.+ ..+      ++++.+... ..-||.+.|.
T Consensus       398 ----STSPsY~LmASLD~a~~~m~-~~~G-~~l~~~~i~~a~~fR~~l~~-~~~~~~~w~f~~~~~~~~~~~~~w~l~p~  470 (713)
T PRK15399        398 ----STSPSYPIVASVETAAAMLR-GNPG-KRLINRSVERALHFRKEVQR-LREESDGWFFDIWQPENVDEAECWPVAPG  470 (713)
T ss_pred             ----CCCcHHHHHHHHHHHHHHHH-hhhh-HHHHHHHHHHHHHHHHHHHh-ccccccCceeeecCccccCCccceecCCC
Confidence                0111    122222222211 1233 56677888888888888887 666      566542111 0112322221


Q ss_pred             cc----CC-------Cchh-------------hH-HHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCC
Q psy12303        408 RV----RN-------MPHE-------------KR-LNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVT  462 (480)
Q Consensus       408 ~~----~~-------~~~~-------------~~-~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t  462 (480)
                      .-    .+       .+..             +. ...+.  +..+.+.|.+.| +.+..+.    .+.+-+. .++..|
T Consensus       471 ~~whgf~~~~~~~~~lDP~KltI~t~g~~~~g~~~~~Gi~--g~~l~~~L~e~g-I~~E~~d----~~~vL~l-~s~g~t  542 (713)
T PRK15399        471 EQWHGFKDADADHMFLDPVKVTILTPGMDEQGNMSEEGIP--AALVAKFLDERG-IVVEKTG----PYNLLFL-FSIGID  542 (713)
T ss_pred             cccccccccccccccCCCceEEEEecCcccccccccCCCC--HHHHHHHHHHcC-CEEEecC----CCeEEEE-eCCCCC
Confidence            00    00       0000             00 00011  235667776776 4444422    3456665 778899


Q ss_pred             HHHHHHHHHHHHHhh
Q psy12303        463 EGDIDFLLTEMDRLG  477 (480)
Q Consensus       463 ~~di~~~~~~l~~~~  477 (480)
                      ++++++++++|.++-
T Consensus       543 ~~~~~~L~~aL~~f~  557 (713)
T PRK15399        543 KTKAMGLLRGLTEFK  557 (713)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998763

>PRK07678 aminotransferase; Validated

Probab=99.75  E-value=7.4e-15  Score=146.99  Aligned_cols=330  Identities=17%  Similarity=0.152  Sum_probs=189.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceE-EEecCCCchhHHHHHHHcCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLV-MFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~-vl~~~~~h~s~~~~~~~~g~  190 (480)
                      +...++.+.++++++.. ..+.|+++||+|+..|++.||...    ...|.   ||+.. |......|.....+....+.
T Consensus        89 ~~~~~lae~l~~~~~~~-~~v~f~~sGseA~e~AlklAr~~t----~~~g~---~~r~~ii~~~~~yHG~t~~als~~~~  160 (451)
T PRK07678         89 EPAIKLAEKLNEWLGGE-YVIFFSNSGSEANETAFKIARQYH----AQKGE---PHRYKFISRYRAYHGNSMGALAATGQ  160 (451)
T ss_pred             HHHHHHHHHHHHhCCCC-CEEEEeCCcHHHHHHHHHHHHHHH----HhcCC---CCCcEEEEECCCcCCccHHHhhcCCC
Confidence            44556778888887654 368999999999999999998741    11232   33334 44455567766555554332


Q ss_pred             C---------CCCeEEeeCCCCCCC---------CH---HHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHH
Q psy12303        191 G---------TDNCVEVPSDKRGRL---------IP---SELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEE  245 (480)
Q Consensus       191 ~---------~~~v~~v~~~~~~~~---------d~---~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~  245 (480)
                      .         ...+..+|.....+.         +.   +.+++.++..  .+..+++|+++..+...|.+.|    +++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvi~EPiqg~gG~~~~~~~fl~~  238 (451)
T PRK07678        161 AQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWE--LSETIAAVIMEPIITGGGVLMPPQDYMKA  238 (451)
T ss_pred             cccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEccccCCCCcccCCHHHHHH
Confidence            1         112344443322111         11   2245555421  2345899999999888888865    899


Q ss_pred             HHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCc-ccc
Q psy12303        246 IADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSA-EYL  323 (480)
Q Consensus       246 I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~-~~l  323 (480)
                      +.++|++||+++|+|+++.|+......+.. ...|+ .+|++++  .|.++++ .++|.+++++. +......... ..+
T Consensus       239 lr~lc~~~g~llI~DEV~tGfGRtG~~~~~-~~~gv-~PDivt~--gK~lggG~~Pi~av~~~~~-i~~~~~~~~~~~~~  313 (451)
T PRK07678        239 VKEICQKHGALLISDEVICGFGRTGKAFGF-MNYGV-KPDIITM--AKGITSAYLPLSATAVKKE-IYEAFKGKGEYEHF  313 (451)
T ss_pred             HHHHHHHcCCEEEEeehhhcCCcCchhHHH-HhcCC-CCCEEEe--ecccccCCcceeEEEEcHH-HHHHHhccCccccc
Confidence            999999999999999999877554433333 33456 6999985  6999887 48899887654 3332211000 000


Q ss_pred             cccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeEE
Q psy12303        324 FMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVNV  400 (480)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~v  400 (480)
                      .+.          +++   .+.+....++.++|+.+..+   ...++..++.++|.+.|++.   ++.+.-+ .-.+.++
T Consensus       314 ~h~----------~T~---~gnp~~~aaa~a~l~~l~~~---~~~~~~~~~g~~l~~~l~~~~~~~~~v~~v-rg~Gl~~  376 (451)
T PRK07678        314 RHV----------NTF---GGNPAACALALKNLEIMENE---NLIERSAQLGELLLEQLKEELGEHPLVGDI-RGKGLLV  376 (451)
T ss_pred             ccC----------CCC---CcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHhcCCCEEEE-EeeceEE
Confidence            010          011   11122233333444443332   34566777777777766431   2322111 1222333


Q ss_pred             EEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeee-eCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        401 SFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQP-LNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       401 ~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~-~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+.+..........+   .   .....+...+.++|.++....+ ..+..+.+|++ ++..+|++||+++++++++.+++
T Consensus       377 ~i~~~~~~~~~~~~~---~---~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~-Ppl~it~~eid~~~~~l~~~l~~  449 (451)
T PRK07678        377 GIELVNDKETKEPAD---N---DKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLS-PPLVISSEEIAFIVGTLKTALER  449 (451)
T ss_pred             EEEEecCCcccCcCc---h---HHHHHHHHHHHHCCcEEeecCccccCCCCEEEEE-CCCcCCHHHHHHHHHHHHHHHHh
Confidence            343332111000000   0   1134677888899965432111 11114689999 99999999999999999998765


Q ss_pred             C
Q psy12303        480 L  480 (480)
Q Consensus       480 l  480 (480)
                      +
T Consensus       450 ~  450 (451)
T PRK07678        450 I  450 (451)
T ss_pred             c
Confidence            4

>PRK07049 methionine gamma-lyase; Validated

Probab=99.75  E-value=1.3e-15  Score=151.11  Aligned_cols=224  Identities=14%  Similarity=0.171  Sum_probs=158.0

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH-
Q psy12303        107 APVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA-  185 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~-  185 (480)
                      .|....+|    +.++++.|.+  ++++++||+.|+..++.++.+              ||+ .|+++.+.|..+...+ 
T Consensus        82 ~Pt~~~Le----~~lA~leg~~--~~iv~~sG~~Ai~~~l~al~~--------------~Gd-~Vv~~~p~Y~~~~~~~~  140 (427)
T PRK07049         82 HPNSEIVE----DRLAVYEGAE--SAALFSSGMSAIATTLLAFVR--------------PGD-VILHSQPLYGGTETLLA  140 (427)
T ss_pred             CcCHHHHH----HHHHHHhCCC--cEEEEccHHHHHHHHHHHHhC--------------CCC-EEEEcCCCcccHHHHHH
Confidence            34444555    4588888865  489999999999888877765              556 7888888888776654 


Q ss_pred             ---HHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHH------cCcE
Q psy12303        186 ---AVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQK------YNMW  256 (480)
Q Consensus       186 ---~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~------~~~~  256 (480)
                         ...|+   +++.++.    ..|++++++++++...+ .++++|++++|+||+|.+.|+++|.+++++      ++++
T Consensus       141 ~~l~~~Gi---~~v~~~~----~~d~~~l~~~l~~~~~~-~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~  212 (427)
T PRK07049        141 KTFRNFGV---GAVGFAD----GLSEAAIGAAAEAAAAK-GRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPI  212 (427)
T ss_pred             HHHHhcCc---EEEEEeC----CCCHHHHHHHHHhhccC-CCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCE
Confidence               34455   5555542    25788888888654321 248999999999999999999999999988      8999


Q ss_pred             EEeeccccccccccccccCcccCCCCCCccceeCccccCCC-c-ccceEEEEeCchhhHhhhcCCcccccccccccCccc
Q psy12303        257 LHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGT-L-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRY  334 (480)
Q Consensus       257 l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~-p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  334 (480)
                      +++|++|.......+ ...       ++|+++.|++|++++ | ...|+++ .++++.+........             
T Consensus       213 vvvDety~~~~~~~p-l~~-------g~divv~S~SK~~gG~~glr~G~vv-~~~~l~~~l~~~~~~-------------  270 (427)
T PRK07049        213 IACDNTLLGPVFQKP-LEH-------GADLSVYSLTKYVGGHSDLVAGAVL-GRKALIRQVRALRSA-------------  270 (427)
T ss_pred             EEEECCccccccCCc-ccc-------CCCEEEEcCceeecCCCCcEEEEEE-CCHHHHHHHHHHHHh-------------
Confidence            999999876543221 122       689999999999995 2 3466665 455444433211110             


Q ss_pred             CCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        335 DTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       335 ~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                              .+.......+|+.++.+  +.+..++++..++++.+.+.|++ +|+++-+
T Consensus       271 --------~g~~ls~~~a~l~~r~L--~tl~~R~~~~~~~a~~la~~L~~-~p~V~~v  317 (427)
T PRK07049        271 --------IGTQLDPHSCWMLGRSL--ETLVLRMERANRNARAVAEFLRD-HPKVEKL  317 (427)
T ss_pred             --------cCCCCCHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHHHHHh-CCCccEE
Confidence                    11113556777776654  46788888999999999999999 8887644

>PLN00144 acetylornithine transaminase

Probab=99.75  E-value=2.5e-15  Score=147.60  Aligned_cols=306  Identities=11%  Similarity=0.049  Sum_probs=179.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCcc-----CCceEEEecCCCchhHHHHH
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAI-----KGQLVMFTSDQCHYSVRSCA  185 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~-----~g~~~vl~~~~~h~s~~~~~  185 (480)
                      +....++.+.++++.+.  +.+.|+++||+|+..|++.+|...    .++|....     +....|......|.....+.
T Consensus        56 ~~~~~~la~~l~~~~~~--~~v~f~~sGseA~e~AlklAr~~~----~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~  129 (382)
T PLN00144         56 TIPQVELAKRLVASSFA--DRVFFCNSGTEANEAAIKFARKYQ----RVRAPDKKDPAASSATEFVSFSNSFHGRTLGAL  129 (382)
T ss_pred             CHHHHHHHHHHHhcCCC--CeEEEeCCcHHHHHHHHHHHHHHH----hccCCCCccccccccceEEEECCCcccccHHHH
Confidence            34455667777777644  469999999999999999998742    11111000     01225556666777666666


Q ss_pred             HHcCCC---------CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc--C--hHHHHHHHHH
Q psy12303        186 AVCGLG---------TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD--P--IEEIADICQK  252 (480)
Q Consensus       186 ~~~g~~---------~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~--~--l~~I~~i~~~  252 (480)
                      ...+..         ...+..+|.+     |+++|++.++.     ..+++|+++..+++.|...  +  +++|.++|++
T Consensus       130 s~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~-----~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~  199 (382)
T PLN00144        130 ALTSKEQYRTPFEPLMPGVTFVEYG-----NLEAARKLIQK-----GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDE  199 (382)
T ss_pred             hcCCCccccccCCCCCCCeEEeCCC-----CHHHHHHhcCC-----CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence            544321         1123444443     78899888742     2378888888888855542  3  8999999999


Q ss_pred             cCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCc
Q psy12303        253 YNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDV  332 (480)
Q Consensus       253 ~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  332 (480)
                      ||+++|+|++++++......+.. ...++ ..|+++  +.|.+++++++|+++.+. ++.+....   ... .       
T Consensus       200 ~g~llI~DEv~tg~gr~g~~~~~-~~~~~-~PDi~t--~sK~l~~G~pig~v~~~~-~~~~~~~~---~~~-~-------  263 (382)
T PLN00144        200 AGALLVFDEVQCGLGRTGYLWAH-EAYGV-EPDIMT--LAKPLAGGLPIGAVLVTE-KVASAINP---GDH-G-------  263 (382)
T ss_pred             cCCEEEEechhhCCCccchHhhh-hhcCC-CCCEEE--ecccccCCcceEEEEEcH-HHHhccCC---CCC-C-------
Confidence            99999999999987553322221 23455 578555  679999888899998753 33332211   000 0       


Q ss_pred             ccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHH-HHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCC
Q psy12303        333 RYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLME-LAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRN  411 (480)
Q Consensus       333 ~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~-l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~  411 (480)
                          .++   .+.+....++.++++.+....+.+.+++..+ +.+.+.+.+.+ .|.+.-+. ..+.++.+.+ ..  . 
T Consensus       264 ----~T~---~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~-~~~~~~vr-g~G~~~~l~l-~~--~-  330 (382)
T PLN00144        264 ----STF---AGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRRKLGG-NPHVKEVR-GVGLLVGIQL-DV--P-  330 (382)
T ss_pred             ----CCC---CCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhh-CCCceeee-cCceEEEEEe-cC--c-
Confidence                000   1111233344444455533333333322222 33334444455 44432221 2233333332 10  0 


Q ss_pred             CchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        412 MPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       412 ~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                                   ...+.+.+.+.|.++... .  . .+++|++ ++...++++|+.+++.|++++.+
T Consensus       331 -------------~~~~~~~~~~~Gv~i~~~-~--~-~~~lrl~-p~~~~~~~~i~~~~~~l~~~l~~  380 (382)
T PLN00144        331 -------------AGPLVDACRDSGLLVLTA-G--K-GDVVRLV-PPLVISEAELEQAVEILADCLPA  380 (382)
T ss_pred             -------------cHHHHHHHHHCCeEEeec-C--C-CCEEEEe-CCCccCHHHHHHHHHHHHHHHHh
Confidence                         135678888899654332 1  1 3799999 77778899999999999998765

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.75  E-value=6.5e-16  Score=149.87  Aligned_cols=220  Identities=18%  Similarity=0.161  Sum_probs=157.0

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA  185 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~  185 (480)
                      ..|....+|+.    ++++-|...  ++++++|..|+..++.+...              +|+ .|+++...|......+
T Consensus        53 gnPt~~~le~~----la~Le~g~~--a~~~~SGmaAi~~~l~~ll~--------------~Gd-~iv~~~~~Y~~t~~~~  111 (386)
T PF01053_consen   53 GNPTVRALEQR----LAALEGGED--ALLFSSGMAAISAALLALLK--------------PGD-HIVASDDLYGGTYRLL  111 (386)
T ss_dssp             C-HHHHHHHHH----HHHHHT-SE--EEEESSHHHHHHHHHHHHS---------------TTB-EEEEESSSSHHHHHHH
T ss_pred             ccccHHHHHHH----HHHhhcccc--eeeccchHHHHHHHHHhhcc--------------cCC-ceEecCCccCcchhhh
Confidence            45665666655    788887744  88899999999888887754              556 5667777776666655


Q ss_pred             HH----cCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcC-cEEEee
Q psy12303        186 AV----CGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYN-MWLHVD  260 (480)
Q Consensus       186 ~~----~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~-~~l~vD  260 (480)
                      +.    .|+   ++.+++.+     |+++++++++++      +++|++..++||+..+.||++|+++|+++| ++++||
T Consensus       112 ~~~l~~~gv---~v~~~d~~-----d~~~l~~~l~~~------t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVD  177 (386)
T PF01053_consen  112 EELLPRFGV---EVTFVDPT-----DLEALEAALRPN------TKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVD  177 (386)
T ss_dssp             HHCHHHTTS---EEEEESTT-----SHHHHHHHHCTT------EEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEE
T ss_pred             hhhhcccCc---EEEEeCch-----hHHHHHhhcccc------ceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEee
Confidence            54    355   77777654     899999999886      999999999999999999999999999998 999999


Q ss_pred             ccccccccccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCc-hhhHhhhcCCcccccccccccCcccCCC
Q psy12303        261 AAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQD-GLLISCNQMSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       261 ~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~  337 (480)
                      .+++.+...- ...+       ++|+++.|..|++++.-.  .|++++++. .+........  ..              
T Consensus       178 nT~atp~~~~-pL~~-------GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~--~~--------------  233 (386)
T PF01053_consen  178 NTFATPYNQN-PLEL-------GADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFR--RL--------------  233 (386)
T ss_dssp             CTTTHTTTC--GGGG-------T-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHH--HH--------------
T ss_pred             ccccceeeec-cCcC-------CceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchh--hh--------------
Confidence            9998875433 3455       899999999999985432  577776663 3332221100  00              


Q ss_pred             CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        338 DKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       338 ~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                           .|....+..+|+.++  |.+.+..+++++.+++..+.+.|++ +|.++-+
T Consensus       234 -----~G~~~~p~da~ll~r--gl~Tl~~R~~~~~~nA~~lA~~L~~-hp~V~~V  280 (386)
T PF01053_consen  234 -----LGATLSPFDAWLLLR--GLRTLPLRMERQNENAEALAEFLEE-HPKVKRV  280 (386)
T ss_dssp             -----HT-B--HHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHT-STTEEEE
T ss_pred             -----cCccchHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHHHHHh-CCCCCeE
Confidence                 111235667777766  4678889999999999999999999 8988743

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.74  E-value=2e-15  Score=150.44  Aligned_cols=309  Identities=16%  Similarity=0.116  Sum_probs=180.3

Q ss_pred             HHHHHHHHHHHHHhCCCC--C-CeEE-CCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH
Q psy12303        112 LMETVVLEKMRQIIGWQG--G-DSIL-APGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV  187 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~--~-~~~~-t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~  187 (480)
                      ....++.+.+++++..+.  . .+.| ++|||+|+..|++.||..       .|.     +.+|......|.....+...
T Consensus        82 ~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~-------tgr-----~~ii~~~~~yHG~t~~~ls~  149 (425)
T PRK09264         82 TAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKV-------TGR-----TNIVAFTNGFHGMTLGSLAV  149 (425)
T ss_pred             HHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHh-------cCC-----CeEEEECCccCCccHHHHHh
Confidence            445566777777653321  1 3556 489999999999999874       221     22444555567766555554


Q ss_pred             cCC-------C--CCCeEEeeCCCCC--C-CCHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc----ChHHHHHHHH
Q psy12303        188 CGL-------G--TDNCVEVPSDKRG--R-LIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD----PIEEIADICQ  251 (480)
Q Consensus       188 ~g~-------~--~~~v~~v~~~~~~--~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~----~l~~I~~i~~  251 (480)
                      .+.       +  ...+..+|.....  . -|+++|++.+++.......+++|+++..+...|.+.    .+++|.++|+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~  229 (425)
T PRK09264        150 TGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCR  229 (425)
T ss_pred             cCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHH
Confidence            331       1  1234556653211  1 267788888865321123478999999988888653    4999999999


Q ss_pred             HcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCC-cccceEEEEeCchhhHhhhcCCccccccccccc
Q psy12303        252 KYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGT-LLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLY  330 (480)
Q Consensus       252 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  330 (480)
                      +||+++++|++|+++......+.. ...++ ..|++++  .|.++. +.++|++++++. . ...   ..... .     
T Consensus       230 ~~g~llI~DEV~tG~GrtG~~~~~-~~~~v-~PDi~t~--~K~l~~~G~pigav~~~~~-i-~~~---~~~~~-~-----  294 (425)
T PRK09264        230 KHDILLIVDDIQAGCGRTGTFFSF-ERAGI-TPDIVTL--SKSISGYGLPMALVLIKPE-L-DVW---KPGEH-N-----  294 (425)
T ss_pred             HcCcEEEEechhhCCccccHHHHH-hhcCC-CCCEEEe--ccccCCCccceEEEEEchh-h-hcc---CCCcc-C-----
Confidence            999999999999875433322222 22344 6788875  599886 677899988644 2 211   11000 0     


Q ss_pred             CcccCCCCccccCCCCCCchHHHHHH-HHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeE-EEEEee
Q psy12303        331 DVRYDTGDKVIQCGRHNDIFKLWLQW-RAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVN-VSFWYL  405 (480)
Q Consensus       331 ~~~~~~~~~~~~~~r~~~~l~~~~~l-~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~-v~f~~~  405 (480)
                            +++   .+......+..+++ ..+..   .+..++..++.++|.+.|++.   .+.+ +...+..+. +.+.+.
T Consensus       295 ------~T~---~gnp~~~aaa~a~l~~~~~~---~~l~~~~~~~g~~l~~~l~~l~~~~~~~-~~~vrg~Gl~~~i~l~  361 (425)
T PRK09264        295 ------GTF---RGNNLAFVTATAALEEYWSD---DAFEKEVKAKGELVRERLEEIAAKYPGL-GAEVRGRGMMQGIDFG  361 (425)
T ss_pred             ------CCC---CCCHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHhCCCc-eecceecccEEEEEec
Confidence                  000   11111222333444 22222   245566666777777766540   2322 111122222 233221


Q ss_pred             cCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        406 PTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       406 ~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.               .....+.+.+.++|.++... .. . ...+|++ ++..+|++||++++++|++.+++
T Consensus       362 ~~---------------~~~~~l~~~~~~~Gv~~~~~-~~-~-~~~lr~~-p~l~~t~~ei~~~~~~l~~~l~~  416 (425)
T PRK09264        362 DG---------------ELAGKIAAEAFENGLIIETS-GP-E-DEVVKLL-PPLTIDEEELEEGLDILEEAVAE  416 (425)
T ss_pred             Ch---------------HHHHHHHHHHHHCCCEEecc-CC-C-CCEEEEe-CCCCCCHHHHHHHHHHHHHHHHH
Confidence            10               01246778888999655332 11 1 3689998 88999999999999999987653

>PRK07482 hypothetical protein; Provisional

Probab=99.74  E-value=4.7e-15  Score=148.63  Aligned_cols=329  Identities=13%  Similarity=0.071  Sum_probs=189.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEe-cCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFT-SDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~-~~~~h~s~~~~~~~~g  189 (480)
                      ++...++.+.+++++..+-..+.|++|||+|+..|++.||...    ..+|.   +++..|+. ....|.....+....|
T Consensus        93 ~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~----~~~g~---~~r~~Ii~~~~~YHG~t~ga~s~~~  165 (461)
T PRK07482         93 TEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYN----NVLGR---PEKKKIISRWRGYHGSGVVTGSLTG  165 (461)
T ss_pred             CHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHH----HhcCC---CCCceEEEecCccCCccHhhhhccC
Confidence            4556677888888875333468999999999999999998641    11232   22334544 4556665444433332


Q ss_pred             C-------C--CCCeEEeeCCCCCC-------------CCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----h
Q psy12303        190 L-------G--TDNCVEVPSDKRGR-------------LIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----I  243 (480)
Q Consensus       190 ~-------~--~~~v~~v~~~~~~~-------------~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l  243 (480)
                      .       +  ...+..++.....+             -++++|++.+...  .+..+++|+++..+...|.+.|    +
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvi~EPvqg~gG~~~~~~~yl  243 (461)
T PRK07482        166 LSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAE--GPDTIAAFIAEPVLGTGGIVPPPAGYW  243 (461)
T ss_pred             CchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhc--CCCcEEEEEECCccCCCCCcCCCHHHH
Confidence            1       1  11233333221111             0356667666421  2244899999998888887754    8


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCc--
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSA--  320 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~--  320 (480)
                      ++|.++|++||+++|+|+++.|+......+.. ...|+ .+|+++  +.|.+++++ +.|+++++++ +.........  
T Consensus       244 ~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~-~~~gv-~PDiv~--~gKgl~gG~~Pi~av~~~~~-i~~~~~~~~~~~  318 (461)
T PRK07482        244 PAIQAVLKKYDILLIADEVVTGFGRLGSMFGS-DHYGI-EPDLIT--VAKGLTSAYAPLSGSIVGEK-VWDVLEQGSDEH  318 (461)
T ss_pred             HHHHHHHHHhCCEEEEeccccCCCcCcchhhH-HhcCC-CCCEEE--EccccccCccccceeeecHH-HHHHHhcccccC
Confidence            99999999999999999999988665555444 44566 699999  469998875 7888887643 3322211000  


Q ss_pred             ccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCce
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEM  397 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~  397 (480)
                      ..+.+.          +  ++ .+.+....++.++|+.+..+   +..++..++.++|.+.|++.   ++-+.-+ .-..
T Consensus       319 ~~~~h~----------~--T~-~gnpl~~Aaa~a~L~~~~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~v-rG~G  381 (461)
T PRK07482        319 GAIGHG----------W--TY-SGHPICAAAALANLDILERE---NLVGNAAEVGAYFRARLRAAFGDHPLVGEV-RGVG  381 (461)
T ss_pred             CccccC----------C--CC-CcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHhcCCCEEEE-eece
Confidence            000000          0  00 12222333344444444333   34566667777777776541   3322211 1223


Q ss_pred             eEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        398 VNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       398 ~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      .++.+.+.......... ...   ..+...+...+.++|.++.. ..  + .+.+|+. ++..+|++||+++++++++.+
T Consensus       382 lm~giel~~~~~~~~~~-~~~---~~~~~~i~~~~~~~Gvl~~~-~~--~-~~~i~~~-Ppl~it~~ei~~~~~~l~~~l  452 (461)
T PRK07482        382 MLAAVEFVADRDDRTPF-DPA---LKIGPQVSAAALERGVIARA-MP--H-GDILGFA-PPLVLTRAEADEIVAIAKDAV  452 (461)
T ss_pred             eEEEEEeccCCCcCCCC-Chh---hHHHHHHHHHHHHCCcEEec-CC--C-CCEEEEe-CCCCCCHHHHHHHHHHHHHHH
Confidence            33334333211000000 000   01235677888999955422 11  2 3689998 899999999999999998876


Q ss_pred             cc
Q psy12303        478 HD  479 (480)
Q Consensus       478 ~~  479 (480)
                      ++
T Consensus       453 ~~  454 (461)
T PRK07482        453 DE  454 (461)
T ss_pred             HH
Confidence            53

>KOG2040|consensus

Probab=99.74  E-value=3.6e-16  Score=151.38  Aligned_cols=336  Identities=18%  Similarity=0.175  Sum_probs=222.6

Q ss_pred             hcChhhHHHHHHHHHHHHHHhCCCCCCeEECC-ChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHH
Q psy12303        105 EIAPVFILMETVVLEKMRQIIGWQGGDSILAP-GGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS  183 (480)
Q Consensus       105 ~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~-ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~  183 (480)
                      +...+..++-.++..+++++.|++.  +.|.+ +|..+-..+|++.|...    ..+|...   +.+.+++-.+|.....
T Consensus       575 eQaqGY~~lf~~Le~~Lc~iTG~D~--~s~QPNsGA~GEYaGL~~IRaY~----~~kge~h---RnvClIPvSAHGTNPA  645 (1001)
T KOG2040|consen  575 EQAQGYQQLFTELEKDLCEITGFDS--FSLQPNSGAQGEYAGLRVIRAYL----ESKGEGH---RNVCLIPVSAHGTNPA  645 (1001)
T ss_pred             HHHhhHHHHHHHHHHHhheeecccc--eeecCCCCcccchhhHHHHHHHH----HhccCCc---ceeEEEeecccCCChh
Confidence            3456677888899999999999986  55544 45555666666666542    2234322   3488999999999999


Q ss_pred             HHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc-ChHHHHHHHHHcCcEEEeecc
Q psy12303        184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD-PIEEIADICQKYNMWLHVDAA  262 (480)
Q Consensus       184 ~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~-~l~~I~~i~~~~~~~l~vD~a  262 (480)
                      .+.+.|+   +|+.|.++.+|.+|..+|+++.++..++   -+++.+|.|+| .|.+. .+++++++.++||--+..|||
T Consensus       646 SA~Magm---kvvpV~~~~~G~id~~dLk~kaekh~~~---Laa~MvTYPST-~GvfE~~i~d~cd~iHehGGQVYlDGA  718 (1001)
T KOG2040|consen  646 SAAMAGM---KVVPVGCDANGNIDMVDLKAKAEKHKDN---LAALMVTYPST-HGVFEEGIDDICDIIHEHGGQVYLDGA  718 (1001)
T ss_pred             hHHhcCC---EEEEeeccCCCCccHHHHHHHHHHhhhh---hheeEEecccc-cccccccHHHHHHHHHhcCCEEEecCC
Confidence            9999999   8999999999999999999998876543   78999999976 58885 599999999999999999997


Q ss_pred             cccccc-ccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcc----cCCC
Q psy12303        263 WGGGLL-LSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVR----YDTG  337 (480)
Q Consensus       263 ~~~~~~-~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~  337 (480)
                      .--..+ .+.....       ++|+.-.++||.++.|.|.|.--+..-....    ..++|+.+.+......    -..+
T Consensus       719 NMNAqVGlc~pGd~-------GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~----HLapfLP~HpVvs~~~~~~~~~~g  787 (1001)
T KOG2040|consen  719 NMNAQVGLCRPGDI-------GADVCHLNLHKTFCIPHGGGGPGMGPIGVKK----HLAPFLPSHPVVSPGRPEDTSPVG  787 (1001)
T ss_pred             CccceecccCCccc-------cccceeecccceeeecCCCCCCCCCccchhh----hccccCCCCCccCCCCCCCCCCcc
Confidence            654433 2333334       8999999999999988765544333322211    2345554432221110    0011


Q ss_pred             Ccc-ccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhh
Q psy12303        338 DKV-IQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEK  416 (480)
Q Consensus       338 ~~~-~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~  416 (480)
                      ..+ -+.|...-..-.|+.++.+|..|+...-+-.+-+++|+.++|+. +  ++++.....+.+.-.|+- +++..... 
T Consensus       788 sVsaaP~Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~-h--Ykil~~~~~~~vaHEFIl-D~r~fK~~-  862 (1001)
T KOG2040|consen  788 SVSAAPWGSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLES-H--YKILFRGENGLVAHEFIL-DLRPFKKT-  862 (1001)
T ss_pred             ceeccCCCcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhh-c--cceeEecCCcceeeeeee-echhhccc-
Confidence            110 01111112235789999999999999989899999999999998 4  333333333344333321 11111100 


Q ss_pred             HHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        417 RLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       417 ~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                        ..+.  ..++.+||++-|.-..+. .|.- .+.+-+- +...-+++++|++++++-.+.+|
T Consensus       863 --agie--avDvAKRL~DYgFHaPTm-swPV-~gtLMIE-PTESE~k~ElDRfcdAliSIreE  918 (1001)
T KOG2040|consen  863 --AGIE--AVDVAKRLMDYGFHAPTM-SWPV-AGTLMIE-PTESEDKAELDRFCDALISIREE  918 (1001)
T ss_pred             --cCCc--HHHHHHHHHhccCCCCcc-cccc-CCceEec-cCccccHHHHHHHHHHHHHHHHH
Confidence              0011  346889999888322221 2332 4677776 77777889999999998766554

>PRK07480 putative aminotransferase; Validated

Probab=99.74  E-value=4.8e-15  Score=148.22  Aligned_cols=326  Identities=16%  Similarity=0.121  Sum_probs=184.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEe-cCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFT-SDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~-~~~~h~s~~~~~~~~g  189 (480)
                      .....++.+.++++++.+-..+.|+++||+|+..|++.+|...    ...|.   +++.+|+. ....|.....+....|
T Consensus        93 ~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~----~~~g~---~~r~~ii~~~~~yHG~tl~a~s~~g  165 (456)
T PRK07480         93 HPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYW----ALKGK---PQKKVIISRKNGYHGSTVAGASLGG  165 (456)
T ss_pred             CHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHH----HhcCC---CCCcEEEEECCCcCCcchhhhhccC
Confidence            4555667788888875433479999999999999999998741    11232   22334444 4456765544444333


Q ss_pred             CC---------CCCeEEeeCCCCC----CCC--------HHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hH
Q psy12303        190 LG---------TDNCVEVPSDKRG----RLI--------PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IE  244 (480)
Q Consensus       190 ~~---------~~~v~~v~~~~~~----~~d--------~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~  244 (480)
                      ..         ...+..++....+    ..+        .+.|++.+.+.  .+..+++|+++..+...|.+.|    ++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~vAAvi~EPiqg~gG~~~~~~~yl~  243 (456)
T PRK07480        166 MKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILEL--GADNVAAFIGEPIQGAGGVIIPPATYWP  243 (456)
T ss_pred             ChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEccccCCCCCccCCHHHHH
Confidence            21         1123333322110    111        24455444321  2245899999999888888866    99


Q ss_pred             HHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCcccc
Q psy12303        245 EIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSAEYL  323 (480)
Q Consensus       245 ~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~l  323 (480)
                      +|.++|++||+.+|+|+++.|+......+.. ...++ .+|+++  +.|.+++++ +.|+++.++ ++..........+.
T Consensus       244 ~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~-~~~gv-~PDiv~--~gK~l~gG~~Pi~av~~~~-~i~~~~~~~~~~~~  318 (456)
T PRK07480        244 EIQRICRKYDILLVADEVICGFGRTGEWFGS-QHFGI-KPDLMT--IAKGLTSGYIPMGAVGVGD-RVAEVLIEEGGEFN  318 (456)
T ss_pred             HHHHHHHHcCCEEEEechhhCCCcCcchhhh-hhcCC-CCCeee--eehhhccCCccceEEEEcH-HHHHHHhcCCCCcc
Confidence            9999999999999999999877554444333 34466 689988  569988764 788888754 34333211111111


Q ss_pred             cccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHH-HHHHHHHHHHHhcCCCCeEEecC--CceeEE
Q psy12303        324 FMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRL-MELAEYMVKKIKSMPDKFYLILE--PEMVNV  400 (480)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~-~~l~~~l~~~l~~~~~g~~~~~~--~~~~~v  400 (480)
                       +.          +++   .+.+....++.++|+.+-.+   ...++. .++.++|.+.|++ +....++..  -.+.++
T Consensus       319 -~~----------~T~---~gnpl~~Aaa~a~L~~l~~~---~l~~~~~~~~g~~l~~~l~~-l~~~~~i~~vrG~Glm~  380 (456)
T PRK07480        319 -HG----------FTY---SGHPVAAAVALANLRILRDE---GIVERVRDDTGPYLQKRLRE-LADHPLVGEVRGVGLVG  380 (456)
T ss_pred             -cC----------CCC---CcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHH-hhcCCCeeeEEeecceE
Confidence             10          001   12222333444445444333   344555 3566666666655 322222211  122333


Q ss_pred             EEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        401 SFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       401 ~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+.+........   .+.. .......+...+.++|.++...      .+.+|++ +....|++|||++++.|++.+++
T Consensus       381 gie~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~Gll~~~~------~~~l~~~-Ppl~it~~eid~~~~~l~~al~~  448 (456)
T PRK07480        381 AIELVKDKATRE---RFEA-GGGVGTICRDHCFANGLIMRAV------GDRMIIS-PPLVITHAEIDELVEKARKALDA  448 (456)
T ss_pred             EEEEeccccccc---cCcc-hhhHHHHHHHHHHHCCcEEeec------CCEEEEE-CCCCCCHHHHHHHHHHHHHHHHH
Confidence            343332211000   0000 0011245677888999654321      2579998 88899999999999999887653

>PRK07036 hypothetical protein; Provisional

Probab=99.74  E-value=7e-15  Score=147.47  Aligned_cols=326  Identities=13%  Similarity=0.106  Sum_probs=186.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCce-EEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQL-VMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~-~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .+.+.++.+.+++++..+-..+.|++|||+|+..|++.||...    ..+|.   +++. +|......|.....+....+
T Consensus        94 ~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~----~~~g~---t~r~~Ii~~~~~YHG~t~~a~s~~~  166 (466)
T PRK07036         94 NAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYF----NVRGR---PAKKHIITRGDAYHGSTYLTASLTG  166 (466)
T ss_pred             CHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHH----HhcCC---CCccEEEEEcCccCCccHhhhcccC
Confidence            4555667778888764433569999999999999999998641    11222   2222 44445556766545444433


Q ss_pred             CCC---------CCeEEeeCCCC----CCCC--------HHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hH
Q psy12303        190 LGT---------DNCVEVPSDKR----GRLI--------PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IE  244 (480)
Q Consensus       190 ~~~---------~~v~~v~~~~~----~~~d--------~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~  244 (480)
                      ...         ..+..+|....    ..+.        ++.+++.+..  ..+..+++|+++..+...|.+.|    ++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~iAavi~EPv~g~gG~~~p~~~yl~  244 (466)
T PRK07036        167 KAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILS--LGADNIAAFIAEPILGSGGVIVPPPGYHA  244 (466)
T ss_pred             CCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHH--cCCCceEEEEEeCCcCCCCCccCCHHHHH
Confidence            210         12334443211    1111        2334444432  12345899999999888898877    99


Q ss_pred             HHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcC-Ccc-
Q psy12303        245 EIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQM-SAE-  321 (480)
Q Consensus       245 ~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~-~~~-  321 (480)
                      +|.++|++||+++|+|+++.++......+......++ .+|++++  .|.+++++ ++|++++++ ++.+..... ... 
T Consensus       245 ~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv-~PDivt~--gK~l~gG~~Pi~av~~~~-~i~~~~~~~~~~~~  320 (466)
T PRK07036        245 RMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGI-QPDIITF--AKGLTSGYQPLGAVIISE-RLLDVISGPNAKGN  320 (466)
T ss_pred             HHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCC-CCCEEEE--ccccccCccccEEEEEcH-HHHHHHhcccCcCc
Confidence            9999999999999999999877554433222013455 6899884  69998874 788888754 344332211 001 


Q ss_pred             -cccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC--Ccee
Q psy12303        322 -YLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE--PEMV  398 (480)
Q Consensus       322 -~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~--~~~~  398 (480)
                       +...           .++   .+.+....++.++|+.+..   .++.++..++.++|.+.|++ +....++..  -.+.
T Consensus       321 ~~~~~-----------~T~---~gnpl~~aaa~a~Le~i~~---~~l~~~~~~~g~~l~~~L~~-l~~~~~v~~vrG~Gl  382 (466)
T PRK07036        321 VFTHG-----------FTY---SGHPVACAAALKNIEIMER---EGLCEHVREVGPYFEERLAS-LRELPLVGDVRGDHL  382 (466)
T ss_pred             ccccC-----------CCC---CCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHH-hccCCCEEEEEeece
Confidence             1110           000   1111222333333444322   34567778888888887766 422222221  2223


Q ss_pred             EEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        399 NVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       399 ~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      ++.+.+....... +......   .....+...+.++|.++...      .+.+|++ +...+|++||+++++++.+.++
T Consensus       383 ~~~ve~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~Gvl~~~~------~~~~~l~-Ppl~it~~~id~~~~~l~~al~  451 (466)
T PRK07036        383 MACVECVADKGSK-ALLPEDI---AIGQRIDRHCQERGLLVRPL------EHLCVLS-PPLIITRAQIDEIVAILRAAIE  451 (466)
T ss_pred             EEEEEEccCcccc-CCCCchh---HHHHHHHHHHHHCCcEEeec------CCEEEEe-CCCcCCHHHHHHHHHHHHHHHH
Confidence            3344443221110 0000000   12346778888999554321      2578888 8888999999999999987764

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.74  E-value=1e-14  Score=145.40  Aligned_cols=314  Identities=13%  Similarity=0.085  Sum_probs=183.4

Q ss_pred             HHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC-
Q psy12303        113 METVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL-  190 (480)
Q Consensus       113 ~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~-  190 (480)
                      .+.++.+.+++++.-. ...+.|+++||+|+..|++.||..       .|.     +.+|......|.....++...+. 
T Consensus        77 ~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~-------tgr-----~~ii~~~~~yHG~t~~~~~~~~~~  144 (420)
T TIGR00700        77 GYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSY-------TGR-----PGVVAFDHGFHGRTNMTMALTAKV  144 (420)
T ss_pred             HHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHh-------cCC-----CcEEEECCCcCCCcHHHHHhcCCC
Confidence            3445677787776432 246999999999999999999874       222     22555666677776666654331 


Q ss_pred             -------C--CCCeEEeeCCCCCC-------C----CHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHH
Q psy12303        191 -------G--TDNCVEVPSDKRGR-------L----IPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEI  246 (480)
Q Consensus       191 -------~--~~~v~~v~~~~~~~-------~----d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I  246 (480)
                             +  ...+..+|.....+       .    +++.+++.+... ..+..+++|+++..+..+|.+.|    +++|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l  223 (420)
T TIGR00700       145 MPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVID-VGANNVAALVIEPVQGEGGFIVPAKGFVPAL  223 (420)
T ss_pred             cccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhh-cCCCcEEEEEECCccCCCCCccCCHHHHHHH
Confidence                   1  12344444421111       1    144566655311 12345899999999998998766    8999


Q ss_pred             HHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccc
Q psy12303        247 ADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQ  326 (480)
Q Consensus       247 ~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~  326 (480)
                      .++|++||+++++|++|.++......+.. ...++ ..|+++  +.|.++++++.|+++.++ ++.+....   ... . 
T Consensus       224 ~~lc~~~gillI~DEV~tg~gr~g~~~a~-~~~~~-~pDi~~--lsK~l~~G~pig~v~~~~-~i~~~~~~---~~~-~-  293 (420)
T TIGR00700       224 LDWCREHGIVFIADEVQTGFARTGAMFAC-EHEGP-EPDLIT--TAKSLADGLPLSGVTGRA-EIMDAPAP---GGL-G-  293 (420)
T ss_pred             HHHHHHcCCEEEEEecccCCcccchhHHH-hhcCC-CCCEEE--eeccccCCcceEEEEecH-HHHhhcCC---CCc-C-
Confidence            99999999999999999987553322221 22233 578766  679999888899988753 44332211   000 0 


Q ss_pred             ccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeEEEEE
Q psy12303        327 DKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVNVSFW  403 (480)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~v~f~  403 (480)
                                .+  + ++.+....++.++++.+..+.+   .++..++.+++.+.|++.   ++.+.-+ .+.+.++.+.
T Consensus       294 ----------~T--~-~~~pl~~aaa~a~l~~l~~~~~---~~~~~~~g~~l~~~L~~l~~~~~~~~~v-rg~G~~~~i~  356 (420)
T TIGR00700       294 ----------GT--Y-AGNPLACAAALAVLAIIESEGL---IERARQIGRLVTDRLTTLKAVDPRIGDV-RGLGAMIAVE  356 (420)
T ss_pred             ----------CC--C-CcCHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHHhhCCCEEEe-eccceEEEEE
Confidence                      00  0 1111222233333444433333   334444444454444330   4444333 3445555555


Q ss_pred             eecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        404 YLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       404 ~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      +.+.. ...+..       .....+.+.+.++|.++... ...  .+++|++ +....++++|++.+++|.+.++
T Consensus       357 ~~~~~-~~~~~~-------~~~~~l~~~~~~~Gv~i~p~-~~f--~~~lRl~-p~l~~~~~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       357 LVDPG-TTEPDA-------GLAERIATAAHAAGLLLLTC-GMF--GNIIRFL-PPLTIGDELLSEGLDILCAILA  419 (420)
T ss_pred             EecCC-CCCccH-------HHHHHHHHHHHHCCeEEecc-CCC--CCEEEEE-CCCCcCHHHHHHHHHHHHHHhh
Confidence            53221 000010       11346677788899655432 222  3699999 7677899999999999998764

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.74  E-value=1.4e-14  Score=144.73  Aligned_cols=316  Identities=14%  Similarity=0.093  Sum_probs=184.7

Q ss_pred             HHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .+.+.++.+.++++++-. ...+.|+++||+|+..|++.||..       .|.     +.+|......|.....++...+
T Consensus        84 ~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~-------tgr-----~~ii~~~~~YHG~t~~als~s~  151 (445)
T PRK08593         84 HEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAY-------TGR-----PYIISFTNAYHGSTYGSLSMSG  151 (445)
T ss_pred             CHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHh-------hCC-----CeEEEECCCcCCCcHHHHhhcC
Confidence            355566778888887533 246899999999999999999864       221     2245556667877766665544


Q ss_pred             CC----------CCCeEEeeCCCCC-----CCCH-------HHHHHHHHHHHHCCCccEEEEeccCCCccccccC----h
Q psy12303        190 LG----------TDNCVEVPSDKRG-----RLIP-------SELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----I  243 (480)
Q Consensus       190 ~~----------~~~v~~v~~~~~~-----~~d~-------~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l  243 (480)
                      ..          ...+..+|..+..     ..+.       +++++.++.. .....+++|+++......|.+.|    +
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iAavI~EPv~g~gG~~~~~~~yl  230 (445)
T PRK08593        152 ISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKY-LPADEVACIVIETIQGDGGLLEPVPGYF  230 (445)
T ss_pred             CCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhh-cCCCceEEEEEccccCCCCCcCCCHHHH
Confidence            21          1134455543221     1122       2333333221 01235899999999998898866    9


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccc
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYL  323 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l  323 (480)
                      ++|.++|++||+++++|+++.++......+.. ...++ ..|+++  +.|.++++++.|+++.+ +++.+....  ..+.
T Consensus       231 ~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~-~~~gv-~pDi~t--~gK~l~~G~p~gav~~~-~~i~~~~~~--~~~~  303 (445)
T PRK08593        231 EALYKFCREHGILFAVDDIQQGLGRTGKWSSI-SHFNI-TPDLMS--FGKSLAGGMPMSAIVGR-KEIMESLEA--PAHL  303 (445)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCCcCchHHHH-HhcCC-CCCEee--ecccccCCcccEEEEEc-HHHHhhhcc--CCCC
Confidence            99999999999999999999765443222212 22344 578877  56999877778888865 344433211  1110


Q ss_pred             cccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC-CCeEEecC--CceeEE
Q psy12303        324 FMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP-DKFYLILE--PEMVNV  400 (480)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~-~g~~~~~~--~~~~~v  400 (480)
                      .               +. .+.+....++.++++.+-.+   +..++..++.++|.+.|++ + ....++..  -...++
T Consensus       304 ~---------------T~-~~~pl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~-l~~~~~~v~~vrG~Gl~~  363 (445)
T PRK08593        304 F---------------TT-GANPVSCAAALATIDMIEDE---SLLQRSAEKGEYARKRFDQ-WVSKYNFVGDVRGYGLSI  363 (445)
T ss_pred             C---------------CC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHH-HHhcCCcEEEEeccceEE
Confidence            0               00 11112233344444444322   4556777777777777765 2 11112221  122222


Q ss_pred             EEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        401 SFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       401 ~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+.+.+.......+.       .....+.+.+.++|.++ ...   + .+.+|++ ++..+|++||+++++++++.+++
T Consensus       364 gi~l~~~~~~~~~~~-------~~~~~~~~~~~~~Gv~~-~~~---~-~~~lr~~-p~l~~t~~~id~~~~~l~~~l~~  429 (445)
T PRK08593        364 GIDIVSDKKLKTRDN-------EAALKICNYCFEHGVVI-IAV---A-GNVLRFQ-PPLVITYEQLDTALNTIEQAFTA  429 (445)
T ss_pred             EEEEecCCCcCCCcH-------HHHHHHHHHHHHCCeEE-ecc---C-CCEEEEE-CCCccCHHHHHHHHHHHHHHHHH
Confidence            333322111000000       11346778888999544 221   2 3689999 99999999999999999987653

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.74  E-value=9.4e-15  Score=145.30  Aligned_cols=315  Identities=14%  Similarity=0.092  Sum_probs=186.5

Q ss_pred             HHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        112 LMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      ....++.+.++++++.+ ...+.|+++||+|+..|++.||..       .|.     +.+|......|.....++...+.
T Consensus        83 ~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~-------tgr-----~~ii~~~~~yHG~t~~~~s~t~~  150 (421)
T PRK06777         83 ASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAY-------TGR-----PGVIAFGGAFHGRTLLTMALTGK  150 (421)
T ss_pred             hHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHh-------hCC-----CeEEEEcCCcCCccHHHHhhcCC
Confidence            33445667788876532 246999999999999999999874       221     22444555667776666554332


Q ss_pred             C----------CCCeEEeeCCCC-CC----CCHHHHHHHHHHHHHCCCccEEEEeccCCCccccc-cC---hHHHHHHHH
Q psy12303        191 G----------TDNCVEVPSDKR-GR----LIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAF-DP---IEEIADICQ  251 (480)
Q Consensus       191 ~----------~~~v~~v~~~~~-~~----~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~-~~---l~~I~~i~~  251 (480)
                      .          ...+..+|.... ..    -+++.+++.+++. ..+..+++|+++..+...|.. .|   +++|.++|+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~-~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~  229 (421)
T PRK06777        151 VAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKAD-IAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCD  229 (421)
T ss_pred             CcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhc-cCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHH
Confidence            0          012333333221 11    1355677766531 122348899999998888854 34   899999999


Q ss_pred             HcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccC
Q psy12303        252 KYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYD  331 (480)
Q Consensus       252 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  331 (480)
                      +||+++++|++|.++......+.. ...++ ..|+++  +.|.+++++++|+++.+ +++.+.....   ...       
T Consensus       230 ~~g~llI~DEv~tg~gr~g~~~~~-~~~~~-~pDiv~--~sK~l~~G~pigav~~~-~~i~~~~~~~---~~~-------  294 (421)
T PRK06777        230 EHGILLIADEVQTGFARTGKLFAM-EYYDV-KPDLIT--MAKSLGGGMPISAVVGR-AEVMDAPAPG---GLG-------  294 (421)
T ss_pred             HcCCEEEEechhhCCccCCchhhh-hhcCC-CCCEEe--eehhhcCCCceEEEEEc-HHHHhccCCC---CCC-------
Confidence            999999999999976443322221 22233 578765  67999877889998875 3443322110   000       


Q ss_pred             cccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeEEEEEeecCc
Q psy12303        332 VRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVNVSFWYLPTR  408 (480)
Q Consensus       332 ~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~v~f~~~~~~  408 (480)
                           .  ++ ++.+....++.++|+.+..   +++.++..++.++|.+.|++.   .+.+.-+ .+...++.+.+..+.
T Consensus       295 -----~--T~-~~~p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-rg~G~~~~i~~~~~~  362 (421)
T PRK06777        295 -----G--TY-AGNPLAVAAALAVLDVIAE---EKLCQRALILGAHLVEVLEKAKASCPAIVDI-RARGSMVAVEFNDPQ  362 (421)
T ss_pred             -----C--CC-CcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEe-cCceEEEEEEEecCc
Confidence                 0  00 1211223333334443322   456677777777877777651   2433332 455555555443221


Q ss_pred             cCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        409 VRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       409 ~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      . ..+..+       ....+.+.+.++|.++ .+....  .+++|++ +....|+++|++++++|++.+.
T Consensus       363 ~-~~~~~~-------~~~~l~~~~~~~Gv~i-~~~~~~--g~~lr~~-ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        363 T-GKPSPE-------FTRQYQRQALEEGLLL-LSCGVH--GNVIRFL-YPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             c-CCccHH-------HHHHHHHHHHhCCeEE-eecCCC--CCEEEEe-CCCCCCHHHHHHHHHHHHHHHh
Confidence            0 111101       1345667778888554 332222  3699999 8778999999999999988764

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.74  E-value=6.4e-15  Score=147.22  Aligned_cols=315  Identities=16%  Similarity=0.113  Sum_probs=188.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC-
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL-  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~-  190 (480)
                      ....++.+.++++++.....+.|+++||+|+..|++.||..       .|.     ..+|......|.....+....+. 
T Consensus        96 ~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~-------tgr-----~~ii~~~~~yHG~t~~a~s~~~~~  163 (457)
T PRK05639         96 ERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFS-------TRR-----PWILAFIGAYHGQTLGATSVAAFQ  163 (457)
T ss_pred             HHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHh-------cCC-----CeEEEECCCcCCccHHHHHHcCCC
Confidence            44456778888887644357999999999999999999864       221     22444455667766655554331 


Q ss_pred             -------C--CCCeEEeeCCCCCC--------CCHHH--------HHHHHHHHHHCCCccEEEEeccCCCccccccC---
Q psy12303        191 -------G--TDNCVEVPSDKRGR--------LIPSE--------LERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---  242 (480)
Q Consensus       191 -------~--~~~v~~v~~~~~~~--------~d~~~--------L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---  242 (480)
                             +  ...+..+|.....+        -+.++        |++.+......+..+++|+++..+...|.+.|   
T Consensus       164 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~  243 (457)
T PRK05639        164 SSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPEN  243 (457)
T ss_pred             cccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHH
Confidence                   1  12355666543211        12332        33333221112345899999999888888755   


Q ss_pred             -hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcc
Q psy12303        243 -IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAE  321 (480)
Q Consensus       243 -l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~  321 (480)
                       +++|.++|++||+++++|++++|+......+.. ...++ .+|+++  +.|.++++++.|+++.++. +.. ..  ...
T Consensus       244 yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~-~~~gv-~PDiv~--~gK~l~gG~pi~av~~~~~-i~~-~~--~~~  315 (457)
T PRK05639        244 FFKELKKLLDEHGILLVMDEVQTGIGRTGKWFAS-EWFEV-KPDLII--FGKGVASGMGLSGVIGRKE-LMD-LT--SGS  315 (457)
T ss_pred             HHHHHHHHHHHcCCEEEEechhhccCcCchHHHH-HhcCC-CCCEEE--echhhcCCCcceeEEehHH-HHh-hc--CCC
Confidence             899999999999999999999976444433232 33455 689999  5799987788888886543 333 11  111


Q ss_pred             cccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC-CCeEEecC--Ccee
Q psy12303        322 YLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP-DKFYLILE--PEMV  398 (480)
Q Consensus       322 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~-~g~~~~~~--~~~~  398 (480)
                      +..               +. .+.+....++.++|+.+..   +...++..++.++|.+.|++ + .+..++.+  -...
T Consensus       316 ~~~---------------T~-~g~p~~~aaa~a~l~~l~~---~~l~~~~~~~g~~l~~~L~~-l~~~~~~~~~VrG~Gl  375 (457)
T PRK05639        316 ALL---------------TP-AANPVISAAAEATLEIIEE---ENLLKNALKVGEFIKKRLLE-MKESFEVIGDVRGKGL  375 (457)
T ss_pred             ccc---------------CC-CcCHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHHHHHH-HHHhCCCEEeecccee
Confidence            110               00 1111223333444444433   33456666777777777765 3 12222222  2233


Q ss_pred             EEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        399 NVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       399 ~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      ++.+.+..+...  ...       .....+.+.+.++|.++ .... .+ .+.+|+. +...+|++|||++++++++.++
T Consensus       376 ~~gve~~~~~~~--~~~-------~~~~~~~~~~~~~Gv~~-~~~g-~~-~~~lr~~-Ppl~it~~~id~~~~~l~~~l~  442 (457)
T PRK05639        376 MIGVEIVKENGK--PDP-------ELTGKICWRAFELGLIL-PSYG-MF-GNVIRIT-PPLVITKEIAEKGLEIMERAIK  442 (457)
T ss_pred             EEEEEEecCCCC--CCH-------HHHHHHHHHHHhCCeEE-eecC-CC-CCEEEEe-CCCccCHHHHHHHHHHHHHHHH
Confidence            344444322110  000       11246778888898554 3321 11 3699999 9999999999999999998765


Q ss_pred             c
Q psy12303        479 D  479 (480)
Q Consensus       479 ~  479 (480)
                      +
T Consensus       443 ~  443 (457)
T PRK05639        443 D  443 (457)
T ss_pred             H
Confidence            3

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.74  E-value=6.3e-16  Score=157.92  Aligned_cols=310  Identities=17%  Similarity=0.166  Sum_probs=196.0

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      -.+..+.+|+.||++. .-++++|+|.+|..++.++..              ||+ .|+++..+|-|+..++.+.|+   
T Consensus       197 i~eAe~~AA~~fgAd~-tyfvvNGTS~~n~av~~a~~~--------------~Gd-~VLvdRN~HKSv~haLilsga---  257 (714)
T PRK15400        197 HKEAEEYIARVFNADR-SYMVTNGTSTANKIVGMYSAP--------------AGS-TVLIDRNCHKSLTHLMMMSDV---  257 (714)
T ss_pred             HHHHHHHHHHHhCCCc-EEEEeCchHHHHHHHHHHhcC--------------CCC-EEEeecccHHHHHHHHHHcCC---
Confidence            3455677999999986 467888889999988888765              556 899999999999999999998   


Q ss_pred             CeEEeeCCC--C---CCCC-----HHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccc
Q psy12303        194 NCVEVPSDK--R---GRLI-----PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       194 ~v~~v~~~~--~---~~~d-----~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                      ..++++...  .   +.++     .+.++++|++..+ -.+|+.++++++ |..|.+.++++|.++|+.++  +|||+||
T Consensus       258 ~PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~-ak~p~~~vit~p-TYdG~~yd~~~I~~~~~~~~--ilvDEAw  333 (714)
T PRK15400        258 TPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAW  333 (714)
T ss_pred             eEEEecccccccCCccCCCccccCHHHHHHHHHhCcc-ccCccEEEEECC-CCccEecCHHHHHHHhCCCC--EEEEccc
Confidence            556765432  1   2455     8899999976532 234668999999 78899999999999999887  7999999


Q ss_pred             cccccccccccC-cccCCCCCC---c--cceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCC
Q psy12303        264 GGGLLLSKKYRH-PRLTGIERA---D--SVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       264 ~~~~~~~~~~~~-~~~~~~~~~---D--~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  337 (480)
                      ++...+.+.++. .-+.  .++   |  +++-|.||.+.+-...+.+.++..--....   ...|...+           
T Consensus       334 gah~~F~p~~~~~sam~--~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~vd~~~~---n~a~~m~~-----------  397 (714)
T PRK15400        334 VPYTNFSPIYEGKCGMS--GGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETF---NEAYMMHT-----------  397 (714)
T ss_pred             hhhhccCcccCCcChhh--cCCCCCCceEEEEchhhcccchhHHhHHHHcCCCCHHHH---HHHHHHHc-----------
Confidence            999877776531 0121  244   5  899999999998777777776542100000   00111110           


Q ss_pred             CccccCCCCC----CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC------eEEecCCce-eEEEEEeec
Q psy12303        338 DKVIQCGRHN----DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDK------FYLILEPEM-VNVSFWYLP  406 (480)
Q Consensus       338 ~~~~~~~r~~----~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g------~~~~~~~~~-~~v~f~~~~  406 (480)
                           .+.+.    +++.....+.. +..| .++.++..+++..+++.|.+ +++      ++++.+... ..-||.+.|
T Consensus       398 -----STSPsY~l~ASLD~a~~~m~-~~~G-~~l~~~~i~~a~~~R~~l~~-~~~~~~~w~~~~~~~~~~~~~~~w~~~p  469 (714)
T PRK15400        398 -----TTSPHYGIVASTETAAAMMK-GNAG-KRLINGSIERAIKFRKEIKR-LRTESDGWFFDVWQPDHIDTTECWPLRS  469 (714)
T ss_pred             -----CCCcHHHHHHHHHHHHHHHH-hhhh-HHHHHHHHHHHHHHHHHHHh-CCCcccCceEEecChhhcccchhcccCc
Confidence                 01111    22222222111 1223 56778888888899999988 777      777642210 111232222


Q ss_pred             CccC----C-------CchhhH---HHH------h--hhh-hHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCH
Q psy12303        407 TRVR----N-------MPHEKR---LNI------L--GEI-TPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTE  463 (480)
Q Consensus       407 ~~~~----~-------~~~~~~---~~~------l--~~~-~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~  463 (480)
                      ..-.    +       .+..++   ...      +  ..+ +..+.+.|.+.| +.+..+.    .+.+-+. .++..|+
T Consensus       470 ~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e~g-I~~E~~d----~~~iLfl-~s~g~t~  543 (714)
T PRK15400        470 DSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKDGTMSDFGIPASIVAKYLDEHG-IVVEKTG----PYNLLFL-FSIGIDK  543 (714)
T ss_pred             cccccCcccccccccccCCceEEEEeCCCCCCccccccCCCHHHHHHHHHHcC-CEEEecC----CCeEEEE-eCCCCCH
Confidence            1100    0       000000   000      0  011 234566776676 4444422    3556666 7789999


Q ss_pred             HHHHHHHHHHHHh
Q psy12303        464 GDIDFLLTEMDRL  476 (480)
Q Consensus       464 ~di~~~~~~l~~~  476 (480)
                      ++++.++++|.++
T Consensus       544 ~~~~~L~~aL~~f  556 (714)
T PRK15400        544 TKALSLLRALTDF  556 (714)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999876

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.74  E-value=9.8e-15  Score=145.90  Aligned_cols=319  Identities=9%  Similarity=0.060  Sum_probs=187.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCce-EEEecCCCchhHHHHHHHcCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQL-VMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~-~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      +...++.+.++++++.+-..+.|+++||+|+..|++.|+...    ..+|.   +|+. +|......|.....+....|.
T Consensus        97 ~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~----~~rg~---~~r~~Ii~~~~~yHG~t~gals~~~~  169 (453)
T PRK06943         97 EPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAW----RNRGR---GDKREFVCLANGYHGETIGALGVTDV  169 (453)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHH----HHhCC---CCCCEEEEECCCcCCCcHHhhcccCC
Confidence            445567788888876433469999999999999999997641    11222   2222 455555566655555544432


Q ss_pred             C---------CCCeEEeeCCCCCC------------CCHHHHHHHHHHHHHCCCccEEEEecc-CCCccccccC----hH
Q psy12303        191 G---------TDNCVEVPSDKRGR------------LIPSELERLVLERKAKGDIPFFVNCTS-GTTVLGAFDP----IE  244 (480)
Q Consensus       191 ~---------~~~v~~v~~~~~~~------------~d~~~L~~~i~~~~~~~~~~~~v~~~~-~~~~~G~~~~----l~  244 (480)
                      .         ...+..+|......            -+++++++.++.   .+..+++|+++. .+...|.+.|    ++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~iAAviiEPvvqg~gG~~~~~~~yl~  246 (453)
T PRK06943        170 ALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAE---RAGKIAALIVEPLVQCAAGMAMHDPSYLR  246 (453)
T ss_pred             hhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEeccccccCCcccCCHHHHH
Confidence            1         01233444322110            124666766653   234589999988 4777787654    89


Q ss_pred             HHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCc-cc
Q psy12303        245 EIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSA-EY  322 (480)
Q Consensus       245 ~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~-~~  322 (480)
                      ++.++|++||+.+|+|+++.|+......+.. ...++ .+|++++  .|.+++++ +.|+++.+++ +......... ..
T Consensus       247 ~lr~lc~~~gillI~DEV~TG~GRtG~~fa~-~~~gv-~PDivt~--gKgl~gG~~Pi~av~~~~e-i~~~~~~~~~~~~  321 (453)
T PRK06943        247 GLRALCDRYGVHLIADEIAVGCGRTGTFFAC-EQAGV-WPDFLCL--SKGISGGYLPLSLVLSRDA-IFAAFYDDDVTRG  321 (453)
T ss_pred             HHHHHHHHcCCEEEeechhhCCCCCcchhHH-HhCCC-CCCeEee--ehhhccCcccceEEEEcHH-HHHhhcccCccCC
Confidence            9999999999999999999887665544443 34466 6999995  69998874 8899887653 3332211000 00


Q ss_pred             ccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC--CCCeEEecCCceeEE
Q psy12303        323 LFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM--PDKFYLILEPEMVNV  400 (480)
Q Consensus       323 l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~--~~g~~~~~~~~~~~v  400 (480)
                      +.+          .      .+.....+++.+++..+..-.-++..++..++.++|.+.|++.  .+.+.-+ .-.+.++
T Consensus       322 ~~~----------~------~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~v~~v-rG~Gl~~  384 (453)
T PRK06943        322 FLH----------S------HSYTGNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPLAAHPQVRHL-RQRGTIF  384 (453)
T ss_pred             ccC----------C------CCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCEEeE-eccccEE
Confidence            000          0      1111233444444333211111235566777777777777651  2433321 1222233


Q ss_pred             EEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        401 SFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       401 ~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+.+....  .. .    .   .....+...+.++|.++...      .+.+|++ +...+|++||+++++.|++.+++
T Consensus       385 gvel~~~~--~~-~----~---~~~~~i~~~~~~~Gll~~~~------g~~l~~~-Ppl~it~~eid~~~~~l~~al~~  446 (453)
T PRK06943        385 AFDVALDG--DA-A----R---TFSRRFFEAALERELLLRPI------GTTVYLM-PPYVLDDDEIAWLAERTRATLDA  446 (453)
T ss_pred             EEEEccCC--Cc-c----h---HHHHHHHHHHHHCCcEEEec------CCEEEEe-CCCcCCHHHHHHHHHHHHHHHHH
Confidence            33332111  00 0    0   11346778888999654322      2479999 99999999999999999987754

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.74  E-value=2e-14  Score=143.45  Aligned_cols=313  Identities=15%  Similarity=0.135  Sum_probs=186.0

Q ss_pred             HHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      ...+.++.+.++++++-+ ...+.|+++||+|+..|++.||..       .|.     +.+|......|.....++...+
T Consensus        96 ~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~-------tgr-----~~Ii~~~~~yHG~t~~~ls~t~  163 (441)
T PRK05769         96 YEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYH-------TGR-----KYIIAFLGAFHGRTYGSLSLTA  163 (441)
T ss_pred             CHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHH-------hCC-----CeEEEECCCcCCccHHHHHhcC
Confidence            355567788888887532 246999999999999999999964       231     2244455566776666655433


Q ss_pred             CC----------CCCeEEeeCCCCCC-----CC--------HHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----
Q psy12303        190 LG----------TDNCVEVPSDKRGR-----LI--------PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----  242 (480)
Q Consensus       190 ~~----------~~~v~~v~~~~~~~-----~d--------~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----  242 (480)
                      ..          ...+..+|.....+     -+        ++.+++.+-+....+..+++|++.......|.+.|    
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~  243 (441)
T PRK05769        164 SKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNF  243 (441)
T ss_pred             CCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHH
Confidence            10          12344555432111     11        22344422211112345899999999999999888    


Q ss_pred             hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccc
Q psy12303        243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEY  322 (480)
Q Consensus       243 l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~  322 (480)
                      +++|.++|++||+++++|++++++......+.. ...++ ..|++++  .|.++++++.|+++.++. ... ..   ...
T Consensus       244 l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~-~~~gv-~pDivt~--~K~l~~G~p~gav~~~~~-i~~-~~---~~~  314 (441)
T PRK05769        244 FKELRKLADKYGILLIDDEVQTGMGRTGKMFAI-EHFGV-EPDIITL--AKAIAGGLPLGAVIGRAE-LMF-LP---PGS  314 (441)
T ss_pred             HHHHHHHHHHcCCEEEEechhhCCCcccceehh-hccCC-CCCEEEE--cccccCCcccEEEEEehh-hhh-cC---CCC
Confidence            999999999999999999999975443322222 22344 5798874  588887778888886543 322 11   100


Q ss_pred             ccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEecCC--ceeE
Q psy12303        323 LFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD-KFYLILEP--EMVN  399 (480)
Q Consensus       323 l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~-g~~~~~~~--~~~~  399 (480)
                      ..            .  ++ .+.+....++.++|+.+..    +..++..++.++|.+.|++ +. .+.++...  .+.+
T Consensus       315 ~~------------~--T~-~g~p~~~aaa~a~L~~l~~----~~~~~~~~~g~~l~~~L~~-l~~~~~~~~~vrg~G~~  374 (441)
T PRK05769        315 HA------------N--TF-GGNPVAAAAALATLEELEE----GLLENAQKLGEYLRKELKE-LKEKYEFIGDVRGLGLM  374 (441)
T ss_pred             CC------------C--CC-CcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-HHHhCCCeeeeecceEE
Confidence            00            0  01 1111233334444444322    5567777888888887765 31 12222221  2233


Q ss_pred             EEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        400 VSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       400 v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.+.+.... .. ..       ......+.+.+.++|.++. +   .+ .+.+|++ +...+|++||+++++++++.+++
T Consensus       375 ~~i~~~~~~-~~-~~-------~~~~~~~~~~~~~~Gil~~-~---~~-~~~lr~~-p~l~~t~~~id~~~~~l~~~l~~  439 (441)
T PRK05769        375 IGVELVKDR-KE-PD-------PKLRDKVLYEAFKRGLLLL-G---AG-KSAIRII-PPLIITEEEADIGLEILEEAIKE  439 (441)
T ss_pred             EEEEeccCC-cc-cc-------HHHHHHHHHHHHhCCcEEe-c---CC-CCEEEEe-CCCCCCHHHHHHHHHHHHHHHHH
Confidence            344333221 00 00       0113467788888995543 2   12 4689999 88999999999999999988754

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.74  E-value=5.3e-15  Score=146.76  Aligned_cols=314  Identities=12%  Similarity=0.033  Sum_probs=185.1

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCce-EEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQL-VMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~-~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .+...++.+.+++++..+-..+.|+++||+|+..|++.+|...    ..+|.   +++. +|......|.....+....+
T Consensus        86 ~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~----~~~g~---~~r~~ii~~~~~yHG~t~~a~s~~~  158 (429)
T PRK06173         86 HEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQ----QAKGE---VQRTKFATIRSGYHGDTWHAMSVCD  158 (429)
T ss_pred             CHHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHH----HHhCC---CCCcEEEEECCCcCCcchhhhccCC
Confidence            3445567777888775333579999999999999999999641    11232   2232 44455556665444433322


Q ss_pred             C----------CCCCeEEeeCCCC-C-----CCCHHHHHHHHHHHHHCCCccEEEEeccC-CCccccccC----hHHHHH
Q psy12303        190 L----------GTDNCVEVPSDKR-G-----RLIPSELERLVLERKAKGDIPFFVNCTSG-TTVLGAFDP----IEEIAD  248 (480)
Q Consensus       190 ~----------~~~~v~~v~~~~~-~-----~~d~~~L~~~i~~~~~~~~~~~~v~~~~~-~~~~G~~~~----l~~I~~  248 (480)
                      -          ....+..+|.... .     .-+++.|++.++.   .+..+++|+++.. +...|.+.|    +++|.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~---~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~  235 (429)
T PRK06173        159 PVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQ---KGDEIAALILEPVVQGAGGMYFYSPTYLVKARE  235 (429)
T ss_pred             CchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHh---CCCcEEEEEEcchhhccCCcccCCHHHHHHHHH
Confidence            1          0112334443211 0     1135566777753   2345899999985 777787643    899999


Q ss_pred             HHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCc-cccccc
Q psy12303        249 ICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSA-EYLFMQ  326 (480)
Q Consensus       249 i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~-~~l~~~  326 (480)
                      +|++||+++++|+++.|+......+.. ...++ ..|+++  +.|.+++++ ++|.++.+++ +.+....... .+....
T Consensus       236 lc~~~g~llI~DEv~tG~GrtG~~~a~-~~~gv-~PDiv~--~gK~l~gG~~p~~a~~~~~~-i~~~~~~~~~~~~~~~~  310 (429)
T PRK06173        236 LCDQYGVLLIFDEIATGFGRTGKLFAL-EHAGV-VPDIMC--IGKALTGGYLTLSATITTEA-IAQTICSGEAKCFMHGP  310 (429)
T ss_pred             HHHHcCCeEEecchhcCCCcCCcchHH-HhcCC-CCCEEE--eehhhhCCccccceEEecHH-HHHHHhcCCCCccccCC
Confidence            999999999999999765333322222 23455 589888  679998774 6788886543 3332211000 111110


Q ss_pred             ccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC--CceeEEEEEe
Q psy12303        327 DKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE--PEMVNVSFWY  404 (480)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~--~~~~~v~f~~  404 (480)
                                 ++   .+.+....++.++|+.+-.+   ...++..++.++|.+.|++ ..++..+.+  ..+.++.+.+
T Consensus       311 -----------T~---~g~p~~~aaa~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~-~~~~~~v~~vRg~Gl~~~iel  372 (429)
T PRK06173        311 -----------TF---MANPLACAIAAESIRLLLES---PWQQNIQRIEAQLKQELAP-AAEFDSVAEVRVLGAIGVVEM  372 (429)
T ss_pred             -----------CC---CcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHH-hhcCCCeeeeeccceEEEEEe
Confidence                       00   11122333444445544222   3467888888888888876 333332222  1223333333


Q ss_pred             ecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        405 LPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       405 ~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ....               ....+.+.|.++|.++ ...     .+.+|+. +....|++||+++++.|++.+++
T Consensus       373 ~~~~---------------~~~~i~~~l~e~Gi~v-~~~-----g~~l~~~-Ppl~it~~ei~~~~~~l~~~l~~  425 (429)
T PRK06173        373 KEPV---------------NMATLQPRFVEHGIWV-RPF-----GKLVYIM-PPFIISPDELSQLTSGLLRVLKQ  425 (429)
T ss_pred             CCcc---------------cHHHHHHHHHHCCeEE-Eec-----CCEEEEe-CCccCCHHHHHHHHHHHHHHHHH
Confidence            2110               0235778888898543 331     2589999 99999999999999999987753

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.73  E-value=7.2e-16  Score=150.01  Aligned_cols=229  Identities=13%  Similarity=0.122  Sum_probs=157.3

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCc----hhH
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH----YSV  181 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h----~s~  181 (480)
                      ..|....+|+.    ++++.|.+.  ++.+++|+.|+..++.+...              ||+ .|+++...|    ..+
T Consensus        62 ~~P~~~~lE~~----la~leg~~~--av~~sSG~aAi~~al~all~--------------~GD-~Vl~~~~~yg~t~~~~  120 (384)
T PRK06434         62 GNPTVQAFEEK----YAVLENAEH--ALSFSSGMGAITSAILSLIK--------------KGK-RILSISDLYGQTFYFF  120 (384)
T ss_pred             CChhHHHHHHH----HHHHhCCCc--EEEeCCHHHHHHHHHHHHhC--------------CCC-EEEEecCccchHHHHH
Confidence            55666777766    888888864  78999999999999887643              567 566665432    223


Q ss_pred             HHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeec
Q psy12303        182 RSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDA  261 (480)
Q Consensus       182 ~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~  261 (480)
                      ...+...|+   +++++++++...++       +++     .++++|+++.++|+++.+.|+++|.++|++++  ++||+
T Consensus       121 ~~~~~~~Gi---~v~fvd~~~~~~~~-------l~~-----~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~  183 (384)
T PRK06434        121 NKVLKTLGI---HVDYIDTDRLNSLD-------FDP-----SNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDA  183 (384)
T ss_pred             HHHHHhcCc---EEEEECCCChhhee-------ecC-----CCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEEC
Confidence            355566676   78888876422222       222     12889999999999999999999999999998  56799


Q ss_pred             cccccccccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCc
Q psy12303        262 AWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDK  339 (480)
Q Consensus       262 a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  339 (480)
                      +++.+.. ......       ++|++++|.||+++++..  .|++++++++..........    .              
T Consensus       184 t~~s~~~-~~pl~~-------gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~----~--------------  237 (384)
T PRK06434        184 TFASPYN-QNPLDL-------GADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRK----T--------------  237 (384)
T ss_pred             CCCCccc-CCchhc-------CCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHH----h--------------
Confidence            9876543 222233       899999999999998664  56666656544332211000    0              


Q ss_pred             cccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc-----------eeEEEEEe
Q psy12303        340 VIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE-----------MVNVSFWY  404 (480)
Q Consensus       340 ~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~-----------~~~v~f~~  404 (480)
                         .|.....+.+|+.++.  .+.+..++++..+++..+.+.|++ +|.++-+.-|.           +++++|.+
T Consensus       238 ---~G~~~~~~~A~l~~~g--L~tL~~R~~r~~~~a~~~a~~L~~-~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l  307 (384)
T PRK06434        238 ---LGSNPDPIQAYLALRG--LKTLGLRMEKHNKNGMELARFLRD-SKKISNVYYPDTEIGKKVLRGFGGMLSFEL  307 (384)
T ss_pred             ---cCCCCCHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHc-CCCccEEECCChHHHHHhcCCCCceEEEEE
Confidence               1222345667766554  677889999999999999999999 88875443332           45667754

>PRK07481 hypothetical protein; Provisional

Probab=99.73  E-value=2.2e-14  Score=143.51  Aligned_cols=328  Identities=12%  Similarity=0.062  Sum_probs=188.0

Q ss_pred             HHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCce-EEEecCCCchhHHHHHHHc
Q psy12303        111 ILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQL-VMFTSDQCHYSVRSCAAVC  188 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~-~vl~~~~~h~s~~~~~~~~  188 (480)
                      +..+.++.+.++++++-+ -..+.|+++||+|+..|++.||...    +..|.   +|+. +|......|.....++...
T Consensus        85 ~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~----~~~g~---~~r~~ii~~~~~yHG~t~ga~s~~  157 (449)
T PRK07481         85 HPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYW----KVRGQ---PERTKFISLKQGYHGTHFGGASVN  157 (449)
T ss_pred             CHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHH----HhcCC---CCCcEEEEECCCcCCcchhhhccC
Confidence            345566778888887421 2468999999999999999998741    11232   2232 4555555676655554433


Q ss_pred             CCC---------CCCeEEeeCCCC----CC-CCHHHHHHHHH----HHH--HCCCccEEEEeccCCCccccccC----hH
Q psy12303        189 GLG---------TDNCVEVPSDKR----GR-LIPSELERLVL----ERK--AKGDIPFFVNCTSGTTVLGAFDP----IE  244 (480)
Q Consensus       189 g~~---------~~~v~~v~~~~~----~~-~d~~~L~~~i~----~~~--~~~~~~~~v~~~~~~~~~G~~~~----l~  244 (480)
                      +..         ...+..++....    +. -|++++++.+.    +..  ..+..+++|+++..+...|.+.|    ++
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~  237 (449)
T PRK07481        158 GNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWP  237 (449)
T ss_pred             CCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHH
Confidence            211         112334433211    11 24555443332    111  12345899999999888888765    89


Q ss_pred             HHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCc--c
Q psy12303        245 EIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSA--E  321 (480)
Q Consensus       245 ~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~--~  321 (480)
                      +|.++|++||+++|+|+++.|+......+.. ...++ .+|++++  .|.+++++ ++|+++++++ +.........  .
T Consensus       238 ~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~-~~~gv-~PDiv~~--gKgl~gG~~Pi~av~~~~~-i~~~~~~~~~~~~  312 (449)
T PRK07481        238 LVREVCDRHGILLIADEVVTGFGRTGSWFGS-RGWGV-KPDIMCL--AKGITSGYVPLGATMVNAR-IADAFEANADFGG  312 (449)
T ss_pred             HHHHHHHHcCCEEEEeehhhCcCcCchhhHh-hhcCC-CCCEEEE--eecccCCCcCceEEEEcHH-HHHHHhccCcccc
Confidence            9999999999999999999987554433333 33455 6899995  69998774 7888887653 4332211100  0


Q ss_pred             cccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEecC--Ccee
Q psy12303        322 YLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD-KFYLILE--PEMV  398 (480)
Q Consensus       322 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~-g~~~~~~--~~~~  398 (480)
                      .+.+.          +++   .+.+....++.++|+.+..   .+..++..++.++|.+.|++ +. ...++..  -...
T Consensus       313 ~~~h~----------~T~---~gnpl~~aaa~a~L~~l~~---~~l~~~~~~~g~~l~~~L~~-l~~~~~~i~~vrG~Gl  375 (449)
T PRK07481        313 AIMHG----------YTY---SGHPVACAAALATLDIVVR---EDLPANAAKRGAYLLEGLQP-LKERFELVGDVRGKGL  375 (449)
T ss_pred             ccccC----------CCC---CCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHH-HhhcCCCeEEEeecce
Confidence            00000          000   1222233334444444433   34556677777777777766 31 1222222  2223


Q ss_pred             EEEEEeecCc-cCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        399 NVSFWYLPTR-VRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       399 ~v~f~~~~~~-~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      ++.+.+.... .....  +..   ......+.+.+.++|.++...    +  +.+|++ +...+|++|||++++.+++.+
T Consensus       376 m~gi~l~~~~~~~~~~--~~~---~~~~~~~~~~~~~~Gvl~~~~----g--~~i~l~-Ppl~it~~eid~~~~~l~~~l  443 (449)
T PRK07481        376 MLALDLVADKATREPI--DPS---KGYANAVADVARENGVLVRPS----G--TKIILS-PPLVIQREDVDRIVDALDAGL  443 (449)
T ss_pred             EEEEEecccccccCCC--Cch---hHHHHHHHHHHHhCCeEEEec----C--CEEEEE-CCCCCCHHHHHHHHHHHHHHH
Confidence            3334332211 00000  000   012346778888999544321    2  468998 888899999999999999987


Q ss_pred             cc
Q psy12303        478 HD  479 (480)
Q Consensus       478 ~~  479 (480)
                      ++
T Consensus       444 ~~  445 (449)
T PRK07481        444 SA  445 (449)
T ss_pred             Hh
Confidence            65

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.73  E-value=1.5e-14  Score=144.64  Aligned_cols=322  Identities=14%  Similarity=0.103  Sum_probs=186.7

Q ss_pred             HHHHHHHHHHHHHHhCCC--CCCe-EECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH
Q psy12303        111 ILMETVVLEKMRQIIGWQ--GGDS-ILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV  187 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~--~~~~-~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~  187 (480)
                      ++...++.+.++++++..  .... +++++||+|+..|++.||..       +|.     +.+|......|.....+...
T Consensus        81 ~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~-------tgr-----~~Ii~~~~~yHG~t~~~~s~  148 (442)
T TIGR00709        81 TPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTY-------TGR-----TNVISFSGGFHGMTIGALAV  148 (442)
T ss_pred             cHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHh-------cCC-----CeEEEEcCCcCCchHHHHhh
Confidence            455566778888887532  1244 44689999999999999975       221     22555566677776666655


Q ss_pred             cCCC---------CCCeEEeeCCCCCCC--------CHHHH----HHHHHHHHHCCCccEEEEeccCCCccccccC----
Q psy12303        188 CGLG---------TDNCVEVPSDKRGRL--------IPSEL----ERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----  242 (480)
Q Consensus       188 ~g~~---------~~~v~~v~~~~~~~~--------d~~~L----~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----  242 (480)
                      .+..         ...+..+|.....+.        +.+.+    ++.++........+++|+++..+...|.+.+    
T Consensus       149 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~y  228 (442)
T TIGR00709       149 TGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEW  228 (442)
T ss_pred             cCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHH
Confidence            4410         113444544322221        12222    3333221112234788999988888887743    


Q ss_pred             hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccc
Q psy12303        243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEY  322 (480)
Q Consensus       243 l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~  322 (480)
                      +++|.++|++||+++|+|+++.++......+.. ...++ ..|+++  +.|.++++++.|+++.+++ . ....   ...
T Consensus       229 l~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~-~~~gv-~PDiv~--~gK~l~~G~Pigav~~~~~-~-~~~~---~~~  299 (442)
T TIGR00709       229 LQKIREVTRKHDIKLILDEVQAGFGRSGTMFAF-EHAGI-EPDFVV--MSKAVGGGLPLAVLLIAPE-F-DAWQ---PAG  299 (442)
T ss_pred             HHHHHHHHHHcCCEEEEeccccCCCCCCchhHH-HHcCC-CCcEEE--EcccccCCcccEEEEEchH-H-hccC---CCc
Confidence            899999999999999999999987654443333 33455 689999  5799988888999998654 2 2211   100


Q ss_pred             ccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEecC--CceeE
Q psy12303        323 LFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD-KFYLILE--PEMVN  399 (480)
Q Consensus       323 l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~-g~~~~~~--~~~~~  399 (480)
                        +.          .  ++ .+.+....++.++|+.+..+   .+.++..++.++|.+.|++ +. ...++.+  -.+.+
T Consensus       300 --~~----------~--T~-~gnpla~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~L~~-l~~~~~~v~~vrG~Gl~  360 (442)
T TIGR00709       300 --HT----------G--TF-RGNQLAMVTGTEALNYWKDD---NLAQNAQERGERITSFLDD-MIKEHPCIGNVRGRGLM  360 (442)
T ss_pred             --CC----------C--CC-CcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHH-HHHhCCCeeeeeccceE
Confidence              00          0  00 12222333344444443333   3456677777777777765 21 2222222  23344


Q ss_pred             EEEEeecCc-cCCCch-hhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        400 VSFWYLPTR-VRNMPH-EKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       400 v~f~~~~~~-~~~~~~-~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      +.+.+.... ..+... .....   .+...+...+.++|.++ ..... . .+.+|+. +...+|++||+++++++++.+
T Consensus       361 ~~ie~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Gvl~-~~~~~-~-~~~l~~~-Ppl~it~~ei~~~~~~l~~~l  433 (442)
T TIGR00709       361 QGIMIVDERQSKDATGAYPRDC---ELAAAIQGACFENGLLL-ETGGR-E-GEVFRLL-CPITIDQEECEEGISRFKQAV  433 (442)
T ss_pred             EEEEEccCcccccccccCCcch---HHHHHHHHHHHHCCeEE-eecCC-C-CCEEEEE-CCCCCCHHHHHHHHHHHHHHH
Confidence            445443221 100000 00000   12346778888898543 33221 1 4689999 999999999999999998876


Q ss_pred             cc
Q psy12303        478 HD  479 (480)
Q Consensus       478 ~~  479 (480)
                      ++
T Consensus       434 ~~  435 (442)
T TIGR00709       434 EE  435 (442)
T ss_pred             HH
Confidence            43

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.73  E-value=1.2e-14  Score=143.64  Aligned_cols=305  Identities=11%  Similarity=0.063  Sum_probs=180.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCce-EEEecCCCchhHHHHHHHcCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQL-VMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~-~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      +...++.+.|+++.+.. ..+.|+++||+|+..|++.||...    +.+|..  +++. +|......|.....++...+.
T Consensus        82 ~~~~~la~~L~~~~~~~-~~v~f~~sGseA~e~AlklAr~~~----~~~g~~--~~r~~ii~~~~~yHG~t~~~~s~~~~  154 (408)
T PRK04612         82 APPLKLAEELVTASRFA-EKVFLCNSGTEANEAAIKLVRKWA----SSQGRP--ADKRVIVTFRGSFHGRTLAAVTATAQ  154 (408)
T ss_pred             HHHHHHHHHHHhhCCCC-CEEEEcCchHHHHHHHHHHHHHHH----HhhCCC--CCCcEEEEECCCcCCccHHHHHhcCC
Confidence            44456677777776432 469999999999999999999741    122321  1232 444455567766665554432


Q ss_pred             CC---------CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEE
Q psy12303        191 GT---------DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWL  257 (480)
Q Consensus       191 ~~---------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l  257 (480)
                      ..         ..+..+|.+     |++.+++.+++     ..+++|+++..+...|.+.+    +++|.++|++||+++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~-----~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~ll  224 (408)
T PRK04612        155 PKYQEGYEPLPGGFRYVDFN-----DVEALEAAMAG-----GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALL  224 (408)
T ss_pred             cccccCCCCCCCCceEcCCC-----CHHHHHHhhCC-----CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence            10         122233332     78888888752     23677777766554444442    899999999999999


Q ss_pred             EeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCC
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  337 (480)
                      ++|++|++.......+.. ...++ .+|+++  +.|.+++++++|+++.++ +.........     ..          .
T Consensus       225 I~DEv~tg~gr~G~~~a~-~~~~~-~pdi~t--~~K~l~~G~piga~~~~~-~~~~~~~~~~-----~~----------~  284 (408)
T PRK04612        225 VLDEIQCGMGRTGTLFAH-WQEQV-TPDIVT--LAKALGGGFPIGAMLAGP-KVAETMQFGA-----HG----------T  284 (408)
T ss_pred             EEeccccCCCcCCchhhh-hhcCC-CCCEEE--EcchhcCCCceEEEEECH-HHHhhhcCCC-----cC----------C
Confidence            999999875443322221 11222 456666  579998778899988654 3333221100     00          0


Q ss_pred             CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEec--CCceeEEEEEeecCccCCCch
Q psy12303        338 DKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD-KFYLIL--EPEMVNVSFWYLPTRVRNMPH  414 (480)
Q Consensus       338 ~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~-g~~~~~--~~~~~~v~f~~~~~~~~~~~~  414 (480)
                      +  + ++.+....++..+|+.+-.   .++.++..++.++|.+.|++ +. .+.++.  .....++.+.+.+...     
T Consensus       285 t--~-~~~p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~l~~-l~~~~~~i~~vrg~Gl~~~i~~~~~~~-----  352 (408)
T PRK04612        285 T--F-GGNPLAAAVARVALRKLAS---PQIAANVARQSAALRAGLEA-LNAEFGVFAQVRGRGLMLGAVLAPAHA-----  352 (408)
T ss_pred             C--C-CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHH-HHhhCCCeeeeeccceEEEEEecCchh-----
Confidence            0  0 1222233344444444322   35667778888888887766 31 122222  2223333343321110     


Q ss_pred             hhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        415 EKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       415 ~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                              .....+.+.+.+.|.++...    + .+.+|++ ++...|++||+++++.+++.+++
T Consensus       353 --------~~a~~i~~~l~~~Gvlv~~~----g-~~~lRl~-Ppl~it~eeid~~l~~l~~~l~~  403 (408)
T PRK04612        353 --------GQAGAILDLAAEHGLLLLQA----G-PDVLRFV-PALNLTDAELADGLARLRLALAD  403 (408)
T ss_pred             --------hHHHHHHHHHHHCCeEEeeC----C-CCEEEEc-CCccCCHHHHHHHHHHHHHHHHH
Confidence                    01245677888899554332    3 4789999 99999999999999999887653

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.73  E-value=3e-14  Score=141.53  Aligned_cols=317  Identities=13%  Similarity=0.104  Sum_probs=183.7

Q ss_pred             HHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .+...++.+.++++++-+ ...+.|+++||+|+..|++.||..       +|.     ..+|......|.....+....+
T Consensus        82 ~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~-------tgr-----~~ii~~~~~yHG~t~~~~~~~~  149 (425)
T PRK07495         82 YENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAA-------TGR-----SAVIAFGGGFHGRTFMGMSLTG  149 (425)
T ss_pred             CHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHh-------hCC-----CeEEEECCCcCCccHHHhhhcC
Confidence            344556777788877532 146999999999999999999874       221     2244455566776554444333


Q ss_pred             C--------C--CCCeEEeeCCCC-CCCC----HHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHH
Q psy12303        190 L--------G--TDNCVEVPSDKR-GRLI----PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADIC  250 (480)
Q Consensus       190 ~--------~--~~~v~~v~~~~~-~~~d----~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~  250 (480)
                      .        +  ...+..+|.+.+ ..++    ++++++.++.. ..+..+++|+++......|.+.+    +++|.++|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~-~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~  228 (425)
T PRK07495        150 KVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKAD-VDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELC  228 (425)
T ss_pred             CCcccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhc-cCCCceEEEEECCccCCCCCccCCHHHHHHHHHHH
Confidence            1        1  113455665432 1233    33445555421 12245889999988888785533    89999999


Q ss_pred             HHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccccccc
Q psy12303        251 QKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLY  330 (480)
Q Consensus       251 ~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  330 (480)
                      ++||+++++|++++++......+.. ...++ .+|+++  +.|.+++++++|+++.+. ++.....   ......     
T Consensus       229 ~~~g~llI~DEv~tG~gr~G~~~a~-~~~gv-~pDi~t--lsK~l~~G~pigav~~~~-~i~~~~~---~~~~~~-----  295 (425)
T PRK07495        229 DQHGILLIADEVQTGFARTGKLFAM-EHHEV-AADLTT--MAKGLAGGFPLAAVTGRA-EIMDAPG---PGGLGG-----  295 (425)
T ss_pred             HHcCCEEEEechhhcCCcCCCceee-cccCC-CCCEEe--ehhhhcCCccceEEEEcH-HHHhccC---CCCcCC-----
Confidence            9999999999999876443332222 22344 578776  569998878889988754 3333211   110000     


Q ss_pred             CcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeEEEEEeecC
Q psy12303        331 DVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVNVSFWYLPT  407 (480)
Q Consensus       331 ~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~v~f~~~~~  407 (480)
                               ++ .+.+....+..++++.+..+   +..++..++.++|.+.|++.   .|.+.-+... +.++.+.+.+.
T Consensus       296 ---------T~-~~~pl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~-Gl~~~iel~~~  361 (425)
T PRK07495        296 ---------TY-GGNPLGIAAAHAVLDVIEEE---DLCERANQLGNRLKQRLASLRETVPEIADIRGP-GFMNAVEFNDA  361 (425)
T ss_pred             ---------CC-CCCHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHhhCCCeeeeecC-ceEEEEEEecC
Confidence                     00 11112222333445554333   34456666666666666541   3332211112 33344444322


Q ss_pred             ccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        408 RVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       408 ~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ... ...    .   .....+.+.+.++|.++... .. . .+.+|+. +....|+++|++++++|++.+++
T Consensus       362 ~~~-~~~----~---~~~~~~~~~~~~~Gvl~~~~-g~-~-~~~~r~~-Ppl~it~~~id~~~~~l~~~l~~  421 (425)
T PRK07495        362 DSG-LPS----A---EFANRVRLKALEKGLILLTC-GV-H-GNVIRFL-APITIQDDVFAEALDILEASILE  421 (425)
T ss_pred             CCC-Ccc----H---HHHHHHHHHHHHCCeEEeec-CC-C-CCEEEEe-CCCccCHHHHHHHHHHHHHHHHH
Confidence            110 000    0   11346778888899654322 11 1 3689999 99999999999999999988764

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.73  E-value=1.5e-14  Score=145.01  Aligned_cols=327  Identities=13%  Similarity=0.057  Sum_probs=191.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      ++...++.+.+++++..+...+.|+++||+|+..|++.||...    ..+|.++.  ..+|......|.....+....+.
T Consensus        89 ~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlAr~~~----~~~g~t~r--~~ii~~~~~yHG~t~ga~s~~~~  162 (466)
T PRK07030         89 HEPVIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYW----RNRGKPRK--KRFVTLTNSYHGETLAAMSVGDV  162 (466)
T ss_pred             CHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHH----HHhCCCCC--cEEEEECCCcCcccHHHHhccCC
Confidence            4555667788888775333579999999999999999998641    11222111  22455555667766565554432


Q ss_pred             CC---------CCeEEeeCCCCCC----C--------CHHHHHHHHHHHHHCCCccEEEEecc-CCCccccccC----hH
Q psy12303        191 GT---------DNCVEVPSDKRGR----L--------IPSELERLVLERKAKGDIPFFVNCTS-GTTVLGAFDP----IE  244 (480)
Q Consensus       191 ~~---------~~v~~v~~~~~~~----~--------d~~~L~~~i~~~~~~~~~~~~v~~~~-~~~~~G~~~~----l~  244 (480)
                      ..         ..+..+|.....+    .        +++++++.++.   .+..+++|+++. .+...|.+.|    ++
T Consensus       163 ~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~---~~~~iAAvi~EP~iqg~gG~~~~~~~yl~  239 (466)
T PRK07030        163 ALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAE---HHDEIAAVIVEPLIQGAGGMRMYHPVYLK  239 (466)
T ss_pred             ccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEecccccCCCcccCCHHHHH
Confidence            10         1234444322111    1        24556666652   234588999988 5777787754    89


Q ss_pred             HHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCc--c
Q psy12303        245 EIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSA--E  321 (480)
Q Consensus       245 ~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~--~  321 (480)
                      +|.++|++||+.+|+|+++.|+......+.. ...++ .+|++++  .|.+++++ +.|+++.+++ +.+.......  .
T Consensus       240 ~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~-~~~gv-~PDiv~~--gKgl~gG~~Pi~av~~~~e-i~~~~~~~~~~~~  314 (466)
T PRK07030        240 LLREACDRYGVHLIHDEIAVGFGRTGTMFAC-EQAGI-RPDFLCL--SKALTGGYLPLAAVLTTDT-VYQAFYDDYPTLR  314 (466)
T ss_pred             HHHHHHHHcCCEEEEeehhhCcCccccchHH-HhcCC-CCCEEee--ehhccCCcccceEEEecHH-HHHHHhccccccc
Confidence            9999999999999999999887655444443 34566 6999995  69998884 8898887543 3333211100  0


Q ss_pred             cccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC--CceeE
Q psy12303        322 YLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE--PEMVN  399 (480)
Q Consensus       322 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~--~~~~~  399 (480)
                      .+.+.          +++   .+.+....++.++|+.+-.   +++.++..++.++|.+.|++ +.....+.+  -.+.+
T Consensus       315 ~~~h~----------~T~---~gnpla~aaa~a~L~~i~~---~~l~~~~~~~G~~l~~~L~~-l~~~~~v~~vrG~Gl~  377 (466)
T PRK07030        315 AFLHS----------HSY---TGNPLACAAALATLDIFEQ---DNVIENNRALARRMAEATAH-LADHPHVAEVRQTGMI  377 (466)
T ss_pred             ccccC----------CCC---CCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHH-HhcCCCEEEeEeceeE
Confidence            01010          000   1122233333344444332   34567778888888888766 422221221  22233


Q ss_pred             EEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        400 VSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       400 v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.+.+.......... . .. . .....+.+++.++|.++...      .+.+|+. ++..+|++||+++++.+++.+++
T Consensus       378 ~gie~~~~~~~~~~~-~-~~-~-~~~~~i~~~~~~~Gvl~~~~------g~~i~~~-Ppl~it~~eid~~~~~l~~al~~  446 (466)
T PRK07030        378 LAIEMVQDKASKTPY-P-WQ-E-RRGLKVYQHALERGALLRPL------GSVVYFL-PPYVITPEQIDFLAEVASEGIDI  446 (466)
T ss_pred             EEEEeccCccccccC-c-ch-h-HHHHHHHHHHHHCCeEEEec------CCEEEEE-CCccCCHHHHHHHHHHHHHHHHH
Confidence            344333211100000 0 00 0 11246778888999554221      2589998 99999999999999999988764

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.72  E-value=9.8e-15  Score=145.17  Aligned_cols=314  Identities=13%  Similarity=0.082  Sum_probs=184.5

Q ss_pred             HHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .+.+.++.+.++++++.. ...+.|+++||+|+..|++.||..       .|.     +.+|......|.....+....+
T Consensus        82 ~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~-------tgr-----~~ii~~~~~yHG~t~~~~s~~~  149 (421)
T PRK09792         82 YESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAH-------TGR-----PGVIAFSGGFHGRTYMTMALTG  149 (421)
T ss_pred             CHHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHh-------cCC-----CeEEEECCCcCCccHHHHhhcC
Confidence            344556777788876532 246899999999999999999864       221     2244455556776655555433


Q ss_pred             C--------C--CCCeEEeeCCCCC-CC----CHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc-C---hHHHHHHH
Q psy12303        190 L--------G--TDNCVEVPSDKRG-RL----IPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD-P---IEEIADIC  250 (480)
Q Consensus       190 ~--------~--~~~v~~v~~~~~~-~~----d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~-~---l~~I~~i~  250 (480)
                      .        +  ...+..+|...+. .+    +++.+++.+++.. ....+++|+++..++++|... |   +++|.++|
T Consensus       150 ~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~-~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc  228 (421)
T PRK09792        150 KVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDI-EAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLC  228 (421)
T ss_pred             CCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcc-CCCceEEEEEccccCCCCCccCCHHHHHHHHHHH
Confidence            2        1  0124445543211 12    2366776665310 123488999999999999764 5   89999999


Q ss_pred             HHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccccccc
Q psy12303        251 QKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLY  330 (480)
Q Consensus       251 ~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  330 (480)
                      ++||+++++|++++++......+.. ...++ ..|+++  +.|.++++++.|+++.+. ++......   .....     
T Consensus       229 ~~~g~llI~DEv~tg~gr~G~~~a~-~~~~~-~pDi~t--~gK~l~~G~pigav~~~~-~i~~~~~~---~~~~~-----  295 (421)
T PRK09792        229 DEHGIVMIADEVQSGFARTGKLFAM-DHYAD-KPDLMT--MAKSLAGGMPLSGVVGNA-NIMDAPAP---GGLGG-----  295 (421)
T ss_pred             HHcCCEEEEeccccCCCCCCchhHH-HhcCC-CCcEEE--eehhhcCCCceEEEEEcH-HHHhccCC---CCcCC-----
Confidence            9999999999999987553322222 12233 578655  679999888899988643 33332210   00000     


Q ss_pred             CcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCce-eE-EEEEee
Q psy12303        331 DVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEM-VN-VSFWYL  405 (480)
Q Consensus       331 ~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~-~~-v~f~~~  405 (480)
                               ++ .+.+....++.+.++.+..+   +..++..++.+++.+.|++.   .|.   +..+.. +. +.+.+.
T Consensus       296 ---------T~-~gnpl~~aaa~a~l~~l~~~---~~~~~~~~~g~~l~~~l~~l~~~~p~---v~~vrG~Gl~~~ie~~  359 (421)
T PRK09792        296 ---------TY-AGNPLAVAAAHAVLNIIDKE---SLCERANQLGQRLKNTLIDAKESVPA---IAAVRGLGSMIAAEFN  359 (421)
T ss_pred             ---------CC-CCCHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHhCCC---cceecccceEEEEEec
Confidence                     00 11112222333445544332   34556666666666666541   332   223333 33 333332


Q ss_pred             cCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        406 PTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       406 ~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      +.. ......       .....+.+.+.++|.++. ..  ....+++|+. ++...+++||+++++.|.++++
T Consensus       360 ~~~-~~~~~~-------~~~~~l~~~~~~~Gv~i~-~~--g~~~~~irl~-P~l~i~~~ei~~~~~~l~~~l~  420 (421)
T PRK09792        360 DPQ-TGEPSA-------AIAQKIQQRALAQGLLLL-TC--GAYGNVIRFL-YPLTIPDAQFDAAMKILQDALS  420 (421)
T ss_pred             CCc-cCCcch-------HHHHHHHHHHHHCCcEEe-ec--CCCCCEEEEe-CCCcCCHHHHHHHHHHHHHHHh
Confidence            211 000000       113567888899996653 21  1114799998 8888999999999999998765

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.72  E-value=1.6e-14  Score=144.84  Aligned_cols=326  Identities=13%  Similarity=0.067  Sum_probs=190.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCce-EEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQL-VMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~-~vl~~~~~h~s~~~~~~~~g  189 (480)
                      ++.+.++.+.+++++...-..+.|+++||+|+..|++.||...    ...|.   +|+. +|......|.....+..+.|
T Consensus        98 ~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~----~~~g~---tgr~~ii~~~~~YHG~t~~als~s~  170 (460)
T PRK06916         98 NVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYW----QNKGK---PKKQRFVTLKNAYHGDTIGAVSVGA  170 (460)
T ss_pred             CHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHH----HhcCC---CCCcEEEEECCcCCcccHHhHhccC
Confidence            3455667788888875433479999999999999999998741    11122   2232 45555566776666655444


Q ss_pred             CCC---------CCeEEeeCCCCC----C--------CCHHHHHHHHHHHHHCCCccEEEEecc-CCCccccccC----h
Q psy12303        190 LGT---------DNCVEVPSDKRG----R--------LIPSELERLVLERKAKGDIPFFVNCTS-GTTVLGAFDP----I  243 (480)
Q Consensus       190 ~~~---------~~v~~v~~~~~~----~--------~d~~~L~~~i~~~~~~~~~~~~v~~~~-~~~~~G~~~~----l  243 (480)
                      ...         ..+..+|.....    .        -+++++++.++.   .+..+++|+++. .+...|.+.|    +
T Consensus       171 ~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~iAAvi~EP~iqg~gG~~~~~~~fl  247 (460)
T PRK06916        171 IDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKE---KHEEIAAIIVEPLVQGAGGMITMPKGYL  247 (460)
T ss_pred             CcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcccCCHHHH
Confidence            210         123444432111    0        124556666652   234589999988 5777787743    8


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCC--c
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMS--A  320 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~--~  320 (480)
                      +++.++|++||+++|+|+++.|+......+.. ...++ .+|+++  +.|.+++++ ++|+++.++. +........  .
T Consensus       248 ~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~-~~~gv-~PDiv~--~gK~l~gG~~Pi~av~~~~e-i~~~~~~~~~~~  322 (460)
T PRK06916        248 KGLRNLCTKYNVLFITDEVATGFGRTGKMFAC-EHENV-TPDIMT--AGKGLTGGYLPIAITVTTDE-IYNAFYGDYEEQ  322 (460)
T ss_pred             HHHHHHHHHcCCEEEeechhhCCCcCchhhHH-HhcCC-CCCeee--eehhhhcCccccceeeecHH-HHHHhhcccccc
Confidence            99999999999999999999886554444333 34456 689988  569888774 8899887643 333221000  0


Q ss_pred             ccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC--Ccee
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE--PEMV  398 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~--~~~~  398 (480)
                      ..+.+          .+++   .+.+....++.++|..+..   +.+.++..++.++|.+.|++ +.....+.+  -.+.
T Consensus       323 ~~~~~----------~~T~---~gnpl~~aaa~a~l~~l~~---~~l~~~~~~~g~~l~~~l~~-l~~~~~v~~vrG~Gl  385 (460)
T PRK06916        323 KTFFH----------GHSY---TGNPLGCAVALANLELYEK---TNLIEQVARKTEYVATQLED-LFALKHVGDIRQLGL  385 (460)
T ss_pred             Ccccc----------CCCC---CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHH-hhcCCCeEEeecCCc
Confidence            00000          0001   1222223333344444332   24567788888888888876 432222221  1222


Q ss_pred             EEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        399 NVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       399 ~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      ++.+.+........ .....  . .....+...+.++|.++...      .+.+|+. ++..+|++||+++++++++.++
T Consensus       386 m~giel~~~~~~~~-~~~~~--~-~~~~~i~~~~~~~Gvl~~~~------g~~l~~~-Ppl~it~~~id~~~~~l~~~l~  454 (460)
T PRK06916        386 MVGIELVKNKETKE-PFEWT--E-RVGVQVCKRSRELGMLTRPL------GNTIVFM-PPLASTIDELDEMLRILYKAIS  454 (460)
T ss_pred             eeeEEeeccccccc-CCCch--h-hHHHHHHHHHHHCCeEEEec------CCEEEEe-CCcccCHHHHHHHHHHHHHHHH
Confidence            33333322111000 00000  0 01246778888999554321      2589998 9999999999999999998876


Q ss_pred             c
Q psy12303        479 D  479 (480)
Q Consensus       479 ~  479 (480)
                      +
T Consensus       455 ~  455 (460)
T PRK06916        455 D  455 (460)
T ss_pred             h
Confidence            4

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.72  E-value=1.5e-14  Score=144.86  Aligned_cols=321  Identities=12%  Similarity=0.070  Sum_probs=188.3

Q ss_pred             HHHHHHHHHHHHHhCCCC---CCeEEC-CChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH
Q psy12303        112 LMETVVLEKMRQIIGWQG---GDSILA-PGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV  187 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~---~~~~~t-~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~  187 (480)
                      ..+.++.+.+.+++.-+-   ..++|+ ++||+|+..|++.||..       .|.     +.+|......|.....++..
T Consensus       106 ~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~-------tgr-----~~ii~~~~~yHG~t~~als~  173 (464)
T PRK06938        106 PVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTA-------TGR-----STVLSFQGGYHGMSQGALSL  173 (464)
T ss_pred             HHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHh-------hCC-----CeEEEECCccCCccHHHHhh
Confidence            444456666776654211   245565 79999999999999864       221     22455555667766666654


Q ss_pred             cCCC---------CCCeEEeeCCCCCC------------CCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----
Q psy12303        188 CGLG---------TDNCVEVPSDKRGR------------LIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----  242 (480)
Q Consensus       188 ~g~~---------~~~v~~v~~~~~~~------------~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----  242 (480)
                      .+..         ...+..+|.....+            .+++.+++.+++.......+++|++...+...|.+.|    
T Consensus       174 t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~y  253 (464)
T PRK06938        174 MGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEW  253 (464)
T ss_pred             cCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHH
Confidence            4311         11344555432211            1356777777543222235899999998888888754    


Q ss_pred             hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccc
Q psy12303        243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEY  322 (480)
Q Consensus       243 l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~  322 (480)
                      ++++.++|++||+.+|+|+++.|+......+.. ...++ .+|++++  .|.+++++++|+++.++.  +...   .+..
T Consensus       254 l~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~-e~~gv-~PDiv~~--gKglggG~PlsAv~~~~~--~~~~---~~~~  324 (464)
T PRK06938        254 LRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAF-EHAGI-IPDVVVL--SKAIGGSLPLAVVVYREW--LDTW---QPGA  324 (464)
T ss_pred             HHHHHHHHHHcCCEEEEeccccCCCcCcHHHHH-HhcCC-CCCEEEe--eccccCCCceEEEeehhH--hhcc---CCCC
Confidence            899999999999999999999988655544443 34566 6899995  699988889999997643  2211   1111


Q ss_pred             ccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC-CCeEEecC--CceeE
Q psy12303        323 LFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP-DKFYLILE--PEMVN  399 (480)
Q Consensus       323 l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~-~g~~~~~~--~~~~~  399 (480)
                      ..+            ++   .+.+....++.++|+.+..+   +..++..++.++|.+.|++ + ....++.+  -.+.+
T Consensus       325 ~~~------------T~---~gnpla~Aaa~a~L~~l~~~---~l~~~~~~~G~~l~~~L~~-l~~~~~~i~~VrG~Glm  385 (464)
T PRK06938        325 HAG------------TF---RGNQMAMAAGSATLRYIKEH---RLAEHAAAMGERLREHLRQ-LQRDYPQLGDVRGRGLM  385 (464)
T ss_pred             CCC------------CC---CcCHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHH-HHHhCCCeeeeeccceE
Confidence            000            00   12222333344444444333   3456667777777777665 3 11222222  22333


Q ss_pred             EEEEeecCc-cCCCc-hhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        400 VSFWYLPTR-VRNMP-HEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       400 v~f~~~~~~-~~~~~-~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      +.+.+.... ..+.. ......   .....+.+.+.++|.++ .+... . .+.+|+. ++..+|++||+++++++++.+
T Consensus       386 ~gie~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Gll~-~~~g~-~-~~~l~~~-Ppl~it~~eid~~~~~l~~~l  458 (464)
T PRK06938        386 LGVEIVDPQGEPDALGHPPANG---ELASLIQRECLRRGLIL-ELGGR-H-GSVVRFL-PPLIITAEQIDEVAEIFAEAV  458 (464)
T ss_pred             EEEEeccCcccccccccCCccH---HHHHHHHHHHHHCCeEE-eecCC-C-CCEEEEE-CCCccCHHHHHHHHHHHHHHH
Confidence            444443211 00000 000000   12346778888899554 32211 1 3689998 999999999999999999877


Q ss_pred             cc
Q psy12303        478 HD  479 (480)
Q Consensus       478 ~~  479 (480)
                      ++
T Consensus       459 ~~  460 (464)
T PRK06938        459 AA  460 (464)
T ss_pred             HH
Confidence            54

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.72  E-value=3e-15  Score=155.96  Aligned_cols=367  Identities=13%  Similarity=0.053  Sum_probs=227.5

Q ss_pred             CHHHHHHhcCCCCCCCCCCHHHHHHHHHhhccCCccCCCCCccccccCCCChHHhH-HHHHHH--HcCc-CCcchhcChh
Q psy12303         34 HPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMA-GEWLIA--TANT-NMFTYEIAPV  109 (480)
Q Consensus        34 ~p~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~l~~--~~~~-~~~~~~~~~~  109 (480)
                      -|.+++...+.++| ++.+..++++.++++...+..  ...|++...-+...|+++ ..++..  ++.. .++..+.+.+
T Consensus        45 iP~~ir~~~~l~lp-~~~sE~e~~~~~~~~a~kN~~--~~~fiG~G~y~~~~P~vi~~~i~~~~~~yTaYTPYQpEisQG  121 (954)
T PRK12566         45 VPPAIRLNRPLDLP-AALDEQAALARLRGYAEQNQV--WTSLIGMGYHGTVTPTVILRNVLENPGWYTAYTPYQPEIAQG  121 (954)
T ss_pred             CCHHHhcCCCCCCC-CCCCHHHHHHHHHHHHhcCCC--ccccccccccCCcCcHHHHHHHHhCchhhhcCCCCCchhhhH
Confidence            35666644456777 478999999999998766644  234554433333333444 444432  1111 2344456777


Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        110 FILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .-+.-.+...+++++.|.+-.+..+..++|.+-..++++.+..       ++    . +.+|++++..|+.....++...
T Consensus       122 ~Lqal~e~Qtmi~~LtGm~vaNASl~D~atA~aEA~~ma~~~~-------~~----k-~~~~~v~~~~hP~~~~v~~t~~  189 (954)
T PRK12566        122 RLEALLNFQQMTIDLTGLDLANASLLDEATAAAEAMALAKRVA-------KS----K-SNRFFVDEHCHPQTLSVLRTRA  189 (954)
T ss_pred             HHHHHHHHHHHHHHHhCchhhhhhhccchhHHHHHHHHHHHHh-------hc----C-CCEEEECCCCCHHHHHHHHHhh
Confidence            6676677889999999999888899999997666333333321       00    0 2279999999999877665542


Q ss_pred             --CCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccc-
Q psy12303        190 --LGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGG-  266 (480)
Q Consensus       190 --~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~-  266 (480)
                        .|. +++.           +++++.+.++      +++|++++| |..|.+.++++|.++++++|..+++ ++.-.. 
T Consensus       190 ~~~g~-~i~~-----------~~~~~~~~~~------~~~v~vq~P-~~~G~i~d~~~i~~~~h~~gal~~~-~~d~laL  249 (954)
T PRK12566        190 EGFGF-ELVV-----------DAVDNLAAHA------VFGALLQYP-DTHGEIRDLRPLIDQLHGQQALACV-AADLLSL  249 (954)
T ss_pred             hcCCc-EEEE-----------cchhhcCCCC------EEEEEEECC-CCceEEccHHHHHHHHHHcCCEEEE-EeCHHHH
Confidence              221 4332           2344444333      899999999 5789999999999999999998654 433221 


Q ss_pred             ccccccccCcccCCCCCCccceeCccccCCCc-----ccceEEEEeCchhhHhhhcCCcccccccccccCcc--------
Q psy12303        267 LLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-----LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVR--------  333 (480)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-----~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------  333 (480)
                      .+.-+...+       ++|+++.+.+.+ |.|     +..|++.+++. +.+    ..|+.+.+......+.        
T Consensus       250 ~ll~~Pge~-------GADI~vG~~Q~f-Gvp~~~GGP~ag~~a~~~~-~~R----~~PGRivG~s~D~~G~~a~~l~Lq  316 (954)
T PRK12566        250 LVLTPPGEL-------GADVVLGSTQRF-GVPMGYGGPHAAYFACRDD-YKR----AMPGRIIGVSRDARGNTALRMALQ  316 (954)
T ss_pred             hCCCChhhc-------CCcEEeeCCCcC-CCCCCCCCCCeeeeeehHH-HHh----hCCCCccceeecCCCCeeeehhhh
Confidence            122222344       999997766543 334     33677776653 222    2344443322211111        


Q ss_pred             -------cCCCCccccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEee
Q psy12303        334 -------YDTGDKVIQCGRH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYL  405 (480)
Q Consensus       334 -------~~~~~~~~~~~r~-~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~  405 (480)
                             .+-.+.++ |+.. ..++.+.+.+..+|.+|++++.++.+.++.+|.+.|.+  .|+++..++-+..+.+.+ 
T Consensus       317 tREQHIRReKAtSNI-CT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~--~g~~~~~~~fF~~~~v~~-  392 (954)
T PRK12566        317 TREQHIRREKANSNI-CTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEA--KGIKRLNRHFFDTLTLEV-  392 (954)
T ss_pred             HHHHHhhhccccchh-hHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh--cCCccccCCccceEEEEc-
Confidence                   11111111 1100 12222333345569999999999999999999999999  899987776666666654 


Q ss_pred             cCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        406 PTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       406 ~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                      ...                ..++.++..+.|.-+...    + .+.+.+| ....+|.+|++.++.++.
T Consensus       393 ~~~----------------~~~~~~~a~~~~~n~r~~----~-~~~~~~s-~de~~~~~~~~~~~~~f~  439 (954)
T PRK12566        393 GGA----------------QAAIIESAEAARINLRIL----G-RGRLGVS-LDETCDEATVARLFDIFL  439 (954)
T ss_pred             cCC----------------HHHHHHHHHHCCCeeEEe----C-CCeEEEE-eCCCCCHHHHHHHHHHhc
Confidence            101                235666666777433332    1 3578899 889999999999999884

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.72  E-value=1.1e-14  Score=144.31  Aligned_cols=313  Identities=11%  Similarity=0.010  Sum_probs=183.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG  191 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~  191 (480)
                      +...++.+.++++++.+-+.+.|+++||+|+..|++.+|...    ..+|.   .....|......|.....+....+-.
T Consensus        86 ~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~----~~~g~---~r~kii~~~~~yHG~t~~a~s~~~~~  158 (428)
T PRK07986         86 PPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYW----QAKGE---PRQRFLTLRHGYHGDTFGAMSVCDPD  158 (428)
T ss_pred             HHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHH----HhcCC---CCcEEEEECCCcCCCcHhhhcccCCc
Confidence            445567788888875433579999999999999999998741    11121   11225555656676655544443310


Q ss_pred             ----------CCCeEEeeCCCC-C-----CCCHHHHHHHHHHHHHCCCccEEEEeccC-CCcccccc----ChHHHHHHH
Q psy12303        192 ----------TDNCVEVPSDKR-G-----RLIPSELERLVLERKAKGDIPFFVNCTSG-TTVLGAFD----PIEEIADIC  250 (480)
Q Consensus       192 ----------~~~v~~v~~~~~-~-----~~d~~~L~~~i~~~~~~~~~~~~v~~~~~-~~~~G~~~----~l~~I~~i~  250 (480)
                                ...+..+|.... .     .-|++++++.++.   .+..+.+|++... +...|.+.    .+++|.++|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~---~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc  235 (428)
T PRK07986        159 NSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAA---HRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLC  235 (428)
T ss_pred             hhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHh---CCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHH
Confidence                      012233432211 0     1255677777753   2334778888774 55556542    289999999


Q ss_pred             HHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccc
Q psy12303        251 QKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKL  329 (480)
Q Consensus       251 ~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  329 (480)
                      ++||+++++|+++.|+......+.. ...++ .+|+++  +.|.++++ .++|+++.++ ++.+.........+.+.   
T Consensus       236 ~~~g~lLI~DEv~tG~GrtG~~fa~-~~~gv-~PDi~t--~gK~l~gG~~p~~av~~~~-~i~~~~~~~~~~~~~~~---  307 (428)
T PRK07986        236 DREGILLIADEIATGFGRTGKLFAC-EHAGI-APDILC--LGKALTGGTMTLSATLTTR-EVAETISNGEAGCFMHG---  307 (428)
T ss_pred             HHcCCEEEEeccccCCccCCCeeee-cccCC-CCCEEE--echhhhCCcccCcchhchH-HHHHHhhcCCCCccccC---
Confidence            9999999999999775443333333 33455 579887  67998877 4778877654 34333221100001010   


Q ss_pred             cCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC--CceeEEEEEeecC
Q psy12303        330 YDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE--PEMVNVSFWYLPT  407 (480)
Q Consensus       330 ~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~--~~~~~v~f~~~~~  407 (480)
                             .++   .+.+....++.++|+.+-.+   +..++..++.++|.+.|++ +.....+.+  -.+.+..+.+..+
T Consensus       308 -------~T~---~g~p~~~aaa~a~L~~i~~~---~~~~~~~~~g~~l~~~l~~-l~~~~~i~~vRg~Gl~~~ve~~~~  373 (428)
T PRK07986        308 -------PTF---MGNPLACAVANASLSLLESG---DWQQQVAAIEAQLREELAP-LRDAPMVADVRVLGAIGVVETTRP  373 (428)
T ss_pred             -------CCC---CcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHH-HhcCCCEEeEeccceEEEEEeCCc
Confidence                   011   12222333444445544322   3567788888888888876 422222221  1122222222111


Q ss_pred             ccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        408 RVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       408 ~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .               ....+.+.+.++|.++...      .+.+|++ +....|++||+++++.|.+.++
T Consensus       374 ~---------------~~~~~~~~l~~~Gl~~~~~------g~~i~~~-Ppl~it~~ei~~~~~~l~~~l~  422 (428)
T PRK07986        374 V---------------NMAALQRFFVEQGVWIRPF------GKLIYLM-PPYIILPEQLQRLTAAVNRAVQ  422 (428)
T ss_pred             c---------------cHHHHHHHHHHCCcEEEec------CCEEEEe-CCCCCCHHHHHHHHHHHHHHHh
Confidence            0               0235678888899554321      2589999 9999999999999999998765

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.71  E-value=2.6e-14  Score=143.13  Aligned_cols=325  Identities=13%  Similarity=0.041  Sum_probs=186.0

Q ss_pred             HHHHHHHHHHHHHhCC-----CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC-ceEEEecCCCchhHHHHH
Q psy12303        112 LMETVVLEKMRQIIGW-----QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG-QLVMFTSDQCHYSVRSCA  185 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~-----~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g-~~~vl~~~~~h~s~~~~~  185 (480)
                      +...++.+.+++++..     +-..+.|+++||+|+..|++.||...    ...|.   ++ ..+|......|.....+.
T Consensus       107 ~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~----~~~g~---~~r~~ii~~~~syHG~t~gal  179 (472)
T PRK08742        107 EPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYF----HNRGE---HRRTRFIALENGYHGETIGAL  179 (472)
T ss_pred             HHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHH----HhcCC---CCCcEEEEECCCcCCCchhhh
Confidence            4455677788887743     12469999999999999999999752    11222   22 224555556676665555


Q ss_pred             HHcCCCC---------CCeEEeeCCCCCC----C--------CHHHHHHHHHHHHHCCCccEEEEecc-CCCccccccC-
Q psy12303        186 AVCGLGT---------DNCVEVPSDKRGR----L--------IPSELERLVLERKAKGDIPFFVNCTS-GTTVLGAFDP-  242 (480)
Q Consensus       186 ~~~g~~~---------~~v~~v~~~~~~~----~--------d~~~L~~~i~~~~~~~~~~~~v~~~~-~~~~~G~~~~-  242 (480)
                      ...+...         ..+..+|.....+    .        +++.+++.++.   .+..+.+|+++. .+...|.+.| 
T Consensus       180 s~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~iAAvI~EPviqg~gG~~~~p  256 (472)
T PRK08742        180 AVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQ---SPGEICALILEPRLQCAGGMRMHH  256 (472)
T ss_pred             hccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEccccccCCCcccCC
Confidence            5443210         1234444422111    1        24556666642   234588999988 4677787644 


Q ss_pred             ---hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcC
Q psy12303        243 ---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQM  318 (480)
Q Consensus       243 ---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~  318 (480)
                         ++++.++|++||+.+|+|+++.|+......+.. ...|+ .+|++++  .|.+++++ +.|+++++++ +.+.....
T Consensus       257 ~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~-e~~gv-~PDiv~~--gKgl~gG~~Plaav~~~~e-i~~~~~~~  331 (472)
T PRK08742        257 PAYLRRARELCDAHGAFLIADEIATGFGRTGTLFAC-EQAGV-MPDLLCL--SKGLTGGFLPLSAVLATQQ-LYDAFLDD  331 (472)
T ss_pred             HHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHH-HhcCC-CCCEEEE--cccccCCCCCcceeeccHH-HHHHhhcc
Confidence               899999999999999999999987665544444 44566 6999995  69998774 7888887543 33322110


Q ss_pred             C-cccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC--C
Q psy12303        319 S-AEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE--P  395 (480)
Q Consensus       319 ~-~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~--~  395 (480)
                      . ...+.+.          .++   .+.+....+..++|..+-.+.   ++++..++.++|.+.++. .....++.+  -
T Consensus       332 ~~~~~~~h~----------~T~---~gnpl~~Aaa~a~L~~i~~~~---l~~~~~~~g~~l~~~~~~-~~~~~~i~dvRG  394 (472)
T PRK08742        332 SRERAFLHS----------HSY---TGNPLACAAALATLDIFADDD---VIARNQPTAARMTQLAAQ-IGEHPHVADVRQ  394 (472)
T ss_pred             CccCccCcC----------CCC---CccHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHH-HhcCCCeeeEec
Confidence            0 0000000          000   122223333334444443333   445555666666655444 222222222  2


Q ss_pred             ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        396 EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       396 ~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                      .+.++.+.+........... ...   .....+.+.+.++|.++...      .+.+|+. +....|++||+++++.|++
T Consensus       395 ~Gl~~giel~~~~~~~~~~~-~~~---~~~~~~~~~~~~~Gll~~~~------g~vi~~~-PpL~it~~ei~~~~~~l~~  463 (472)
T PRK08742        395 AGMVVAFELTRGGNKRTPFP-PAA---RVGLHAYRAALARGVVLRPL------GDVLYWM-PPYCVDEAQLALLADTTRH  463 (472)
T ss_pred             cceEEEEEeccCccccccCC-chh---HHHHHHHHHHHHCCeEEEec------CCEEEEE-CCCCCCHHHHHHHHHHHHH
Confidence            23333444432110000000 000   01245677888899554321      2689999 9999999999999999998


Q ss_pred             hhcc
Q psy12303        476 LGHD  479 (480)
Q Consensus       476 ~~~~  479 (480)
                      .+++
T Consensus       464 ~l~~  467 (472)
T PRK08742        464 AIDE  467 (472)
T ss_pred             HHHH
Confidence            8764

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.71  E-value=8.5e-15  Score=146.57  Aligned_cols=314  Identities=15%  Similarity=0.111  Sum_probs=172.7

Q ss_pred             HHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCC
Q psy12303        113 METVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGT  192 (480)
Q Consensus       113 ~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~  192 (480)
                      ...++++.+++.++.. ..++|++|||+|+..|++.+|..       .|.     +.+|......|..........+.+.
T Consensus        89 ~~~~lae~l~~~~~~~-~~v~~~~sGseA~e~Alk~ar~~-------~gr-----~~ii~~~~~yhG~~~~~~~~~~~~~  155 (423)
T TIGR00713        89 AEILLAKEIISRVPSV-EMVRFVNSGTEATMSAVRLARGY-------TGR-----DKIIKFEGCYHGHHDALLVKAGSGA  155 (423)
T ss_pred             HHHHHHHHHHHhCCcc-cEEEEeCCHHHHHHHHHHHHHHh-------hCC-----CEEEEEcCCCCCChhhhhccccCcc
Confidence            3455677777776543 47999999999999999999874       121     3244444445554333332211110


Q ss_pred             C----------------CeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHH
Q psy12303        193 D----------------NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQK  252 (480)
Q Consensus       193 ~----------------~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~  252 (480)
                      .                .+..+|.     -|+++|++++++.   +.++++|+++...+++|.+.|    +++|.++|++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~  227 (423)
T TIGR00713       156 ATLGLPTSPGVPEDFAKLTLVLPY-----NDLEALEEVFEEY---GEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEE  227 (423)
T ss_pred             cccCCCCCCCCCcccccceEEeCC-----CCHHHHHHHHHHc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHH
Confidence            0                1122222     2789999988742   234788888755555898866    7999999999


Q ss_pred             cCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCc
Q psy12303        253 YNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDV  332 (480)
Q Consensus       253 ~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  332 (480)
                      ||+++++|++|.++.. ...... ...++ ..|+++  +.|.++++++.|+++.++ ++..........+...       
T Consensus       228 ~~~llI~DEv~~g~r~-g~~~~~-~~~~~-~pDi~t--~sK~l~~G~pig~v~~~~-~i~~~~~~~~~~~~~~-------  294 (423)
T TIGR00713       228 YGSLLIFDEVMTGFRV-ALGGAQ-EYFGV-EPDLTT--LGKIIGGGLPVGAFGGRR-EIMERLAPEGPVYQAG-------  294 (423)
T ss_pred             hCCEEEEEcccccccc-CcchhH-HHhCC-Ccchhh--hhhhhcCCCceeeeeEHH-HHHHhhCcCCCeeecc-------
Confidence            9999999999987632 222112 22334 468665  789999777789888653 4443332110001100       


Q ss_pred             ccCCCCccccCCCCCCchHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCC
Q psy12303        333 RYDTGDKVIQCGRHNDIFKLWLQWRAKGDE-GFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRN  411 (480)
Q Consensus       333 ~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~-~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~  411 (480)
                           ++   ++.+....++.++|+.+..+ .++...+....+.+.|.+.+.+ . ++..-......++.+.+......+
T Consensus       295 -----T~---~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~v~~~g~~~~v~~~~~~~~~  364 (423)
T TIGR00713       295 -----TL---SGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLED-T-GIPHTVNRVGSMFSLFFTEEEVTN  364 (423)
T ss_pred             -----CC---CCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHh-c-CCCeEEEeeccEEEEEEecCCCCC
Confidence                 00   11112233333444443222 2333344444455555555566 3 433211223344444333221111


Q ss_pred             CchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        412 MPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       412 ~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      .......+  ......+.+.|.++|.+ +...   + .+.+|++ +  .+|+++|++++++|+++++++
T Consensus       365 ~~~~~~~~--~~~~~~~~~~l~~~Gv~-v~~~---~-~~~~~l~-~--~~t~~~i~~~~~~l~~~l~~~  423 (423)
T TIGR00713       365 YADAKKSD--TELFAKFFHEMLDKGVF-LPPS---Q-FEACFLS-A--AHTEEDIENTIEAAEEVFAEL  423 (423)
T ss_pred             hhhhhccc--HHHHHHHHHHHHHCCeE-EecC---C-ccceeeE-C--CCCHHHHHHHHHHHHHHHhhC
Confidence            00000000  00123567788888844 4432   1 2457877 3  369999999999999988764

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK06917 hypothetical protein; Provisional

Probab=99.71  E-value=4.7e-14  Score=140.93  Aligned_cols=332  Identities=13%  Similarity=0.110  Sum_probs=188.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEE-ecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMF-TSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl-~~~~~h~s~~~~~~~~g  189 (480)
                      .+...++.+.+++++......+.|+++||+|+..|++.||...    ..+|.   +|+.+|+ .....|.....+....+
T Consensus        73 ~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~----~~rg~---t~r~~ii~~~~~yHG~t~~als~~~  145 (447)
T PRK06917         73 SEPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHF----QERGI---QGKHKILSRWMSYHGITMGALSMSG  145 (447)
T ss_pred             CHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHH----HhcCC---CCCCEEEEECCCcCCccHHHHHhcC
Confidence            4556678888888875443568999999999999999998641    11232   2233444 44556766666655444


Q ss_pred             CCC---------CCeEEeeCCCCCCC------------CHHHHHHHHHHHHHCCCccEEEEeccCCCccc-cccC----h
Q psy12303        190 LGT---------DNCVEVPSDKRGRL------------IPSELERLVLERKAKGDIPFFVNCTSGTTVLG-AFDP----I  243 (480)
Q Consensus       190 ~~~---------~~v~~v~~~~~~~~------------d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G-~~~~----l  243 (480)
                      ...         ..+..+|.....+.            +++.+++.++..  .+..+++|+++......| .+.|    +
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~iAAvi~EPi~g~~gG~~~p~~~fl  223 (447)
T PRK06917        146 HPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERI--GAEHIAAFIAEPIIGAAGAAVVPPKGYY  223 (447)
T ss_pred             CccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEeccccCcCceecCCHHHH
Confidence            210         01222332111110            234566666532  113489999998776544 5543    8


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCccc
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSAEY  322 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~  322 (480)
                      ++|.++|++||+++++|+++.++......+.. ...++ .+|+++  +.|.+++++ +.|+++.++ ++....... ...
T Consensus       224 ~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~-~~~gv-~PDi~~--~gK~l~~G~~Pi~a~~~~~-~i~~~~~~~-~~~  297 (447)
T PRK06917        224 KVIKEICDHYDILFIADEVMTGLGRTGAMFAM-EHWGV-EPDIMT--LGKGLGAGYTPIAATVVSD-RVMEPILRG-SRS  297 (447)
T ss_pred             HHHHHHHHHcCCEEEEechhhCcCcccchhhH-HhcCC-CCCEEE--eeehhccCCcceEEEEEcH-HHHHHHhcc-Ccc
Confidence            99999999999999999999876554443333 33455 689887  469998875 788888754 444332211 111


Q ss_pred             ccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEecC--CceeE
Q psy12303        323 LFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD-KFYLILE--PEMVN  399 (480)
Q Consensus       323 l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~-g~~~~~~--~~~~~  399 (480)
                      +.+.          +++   .+.+....++.++|+.+..+   ++.++..++.++|.+.|++ +. ...++..  -...+
T Consensus       298 ~~~~----------~T~---~gnpl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~-l~~~~~~i~~vrG~Gl~  360 (447)
T PRK06917        298 IMSG----------HTL---SANPLSAATALAVLEYMEKH---NLPEKAAEKGEYLIKGLQK-VQQQSTIIGDVRGKGLL  360 (447)
T ss_pred             cccc----------cCC---CCCHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHH-HHhcCCCEEEEeecceE
Confidence            1110          000   11222333344444444322   3556777777777777765 31 1222222  22333


Q ss_pred             EEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeee-CC-cccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        400 VSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPL-ND-LPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       400 v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~-~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      +.+.+.......... ....   +....+.+.+.++|.++...... .+ ..+.+|++ +...+|++||+++++++++.+
T Consensus       361 ~~ie~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~-Ppl~it~~eid~~~~~l~~~l  435 (447)
T PRK06917        361 IGVEFVADKKTKQPF-SKSQ---AVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIA-PPMTITYSELDELLSIFAKSV  435 (447)
T ss_pred             EEEEEeccCCcCCCC-cchh---HHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEE-CCCcCCHHHHHHHHHHHHHHH
Confidence            444443221100000 0000   12356778899999654322110 01 14689999 889999999999999999877


Q ss_pred             cc
Q psy12303        478 HD  479 (480)
Q Consensus       478 ~~  479 (480)
                      ++
T Consensus       436 ~~  437 (447)
T PRK06917        436 EE  437 (447)
T ss_pred             HH
Confidence            54

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.71  E-value=3.1e-17  Score=153.12  Aligned_cols=251  Identities=19%  Similarity=0.226  Sum_probs=159.8

Q ss_pred             CcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCC
Q psy12303         98 NTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQC  177 (480)
Q Consensus        98 ~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~  177 (480)
                      +.....|..++...++|+.    +++++|.+.  .+|+++||.||..++++...              |++ .|++...+
T Consensus        19 ~~gd~~Yg~D~~~~~l~~~----i~~l~g~e~--a~f~~sGT~An~~al~~~~~--------------~~~-~vi~~~~a   77 (290)
T PF01212_consen   19 NVGDDAYGEDPTTARLEER----IAELFGKEA--ALFVPSGTMANQLALRAHLR--------------PGE-SVICADTA   77 (290)
T ss_dssp             TSB-CCTTSSHHHHHHHHH----HHHHHTSSE--EEEESSHHHHHHHHHHHHHH--------------TTE-EEEEETTE
T ss_pred             ccCCcccCCChhHHHHHHH----HHHHcCCCE--EEEeCCCChHHHHHHHHHHh--------------cCC-ceeccccc
Confidence            3333457777776666655    888999986  68999999999999999984              434 78888889


Q ss_pred             chhHHHHH---HHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcc-cccc---ChHHHHHHH
Q psy12303        178 HYSVRSCA---AVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVL-GAFD---PIEEIADIC  250 (480)
Q Consensus       178 h~s~~~~~---~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~-G~~~---~l~~I~~i~  250 (480)
                      |..+...-   ...|.   +++.++.+++|.+|+++|++.+++...+..+|++|+++++++.. |.+.   .|++|.++|
T Consensus        78 Hi~~~E~ga~~~~~G~---~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a  154 (290)
T PF01212_consen   78 HIHFDETGAIEELSGA---KLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELA  154 (290)
T ss_dssp             HHHHSSTTHHHHHTTC---EEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHH
T ss_pred             eeeeeccchhhHhcCc---EEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHH
Confidence            98765432   34566   78888877669999999999998864444568999999997654 6664   478888899


Q ss_pred             HHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccccccc
Q psy12303        251 QKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLY  330 (480)
Q Consensus       251 ~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  330 (480)
                      ++||+++|+|||--.-........  .-.-...+|+++++++|.++.|.  |.+++.+++.+....... .++.+.-   
T Consensus       155 ~~~gl~lhmDGARl~~a~~~~~~~--~~e~~~~~D~v~~~~tK~~g~~~--Gavl~~~~~~i~~~~~~~-k~~gg~~---  226 (290)
T PF01212_consen  155 REHGLPLHMDGARLANAAAALGVS--LAEIAAGADSVSFGGTKNGGAPG--GAVLAGNKEFIAKARRQR-KRLGGGM---  226 (290)
T ss_dssp             HHHT-EEEEEETTHHHHHCHHHHH--HHHHHTTSSEEEEETTSTT-SSS--EEEEEESHHHHHHHHHHH-HHHTHHH---
T ss_pred             HhCceEEEEehhhHHHhhhccccc--HHHHhhhCCEEEEEEEccccccc--ceEEEechHHHHHHHHHH-HHhccCe---
Confidence            999999999998543322110000  00111389999999999999753  455555666544322110 1111100   


Q ss_pred             CcccCCCCccccCCCCCCchHH---H--HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCcee
Q psy12303        331 DVRYDTGDKVIQCGRHNDIFKL---W--LQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMV  398 (480)
Q Consensus       331 ~~~~~~~~~~~~~~r~~~~l~~---~--~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~  398 (480)
                                .+    ...+.+   +  ..+..  .+.......+..++++.|.+.|+. . ++.+..++..+
T Consensus       227 ----------~~----~G~~~a~~~~~~~~l~~--l~~~~~~~~~~~~~A~~La~~l~~-~-~~~~~~~~~tn  281 (290)
T PF01212_consen  227 ----------RQ----AGVLAAAELYQFAALRA--LELWLERARHANAMAKRLAAGLEA-L-GGVLPRPVETN  281 (290)
T ss_dssp             ----------HH----TTHHHHHHHHHHHHHCH--EECSHHHHHCHHHHHHCHHHCHHE-E-CEEEETTSS-H
T ss_pred             ----------ee----cceeeeechhhHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHH-C-CCcccCCCCCc
Confidence                      00    011111   1  11211  122256678889999999999999 4 55555444433

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.71  E-value=2.1e-14  Score=143.14  Aligned_cols=313  Identities=15%  Similarity=0.132  Sum_probs=184.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      +..+.++.+.++++++. ...+.|+++||+|+..|++.+|..       .|.     +.+|......|.....++...|.
T Consensus        92 ~~~~~~la~~l~~~~p~-~~~v~f~~sGseA~e~AlklAr~~-------tgr-----~~ii~~~~~yHG~t~~~~~~~~~  158 (428)
T PRK12389         92 TELEIEFAKMLKEAIPS-LEKVRFVNSGTEAVMTTIRVARAY-------TGR-----TKIIKFAGCYHGHSDLVLVAAGS  158 (428)
T ss_pred             CHHHHHHHHHHHHhCCC-CcEEEEeCCHHHHHHHHHHHHHHh-------hCC-----CEEEEECCCcCCChHHHHHhcCC
Confidence            34456677778877652 246999999999999999999875       221     22455555667766555554332


Q ss_pred             CC----------------CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHH
Q psy12303        191 GT----------------DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADIC  250 (480)
Q Consensus       191 ~~----------------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~  250 (480)
                      ..                ..+..+|.+     |++++++.+++.   +..+.+|+++......|.+.|    +++|.++|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~---~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc  230 (428)
T PRK12389        159 GPSTLGTPDSAGVPKSIAQEVITVPFN-----DIEALKEALDKW---GDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELA  230 (428)
T ss_pred             cccccCCCCCCCCCCcccCceEEcCCC-----CHHHHHHHHHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHH
Confidence            10                122333332     788999888643   234889999999999999888    99999999


Q ss_pred             HHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccccccc
Q psy12303        251 QKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLY  330 (480)
Q Consensus       251 ~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  330 (480)
                      ++||+.+++|++++++ ........ ...++ .+|+++  +.|.++++++.|+++.+ +++.+........+..+     
T Consensus       231 ~~~g~llI~DEV~tG~-Rt~~~~a~-~~~gv-~PDivt--~gK~lggG~Pi~av~~~-~~i~~~~~~~~~~~~~~-----  299 (428)
T PRK12389        231 HEAGALVIYDEVITAF-RFMYGGAQ-DLLGV-EPDLTA--LGKIIGGGLPIGAYGGR-KDIMEQVAPLGPAYQAG-----  299 (428)
T ss_pred             HHcCCEEEEEcccccc-ccCcchhh-HHhCC-CCCeee--echhhcCCCceeEEeEH-HHHHhhhccCCCccccc-----
Confidence            9999999999999987 32221112 23355 689877  56999888888998754 44443321101111100     


Q ss_pred             CcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCC-eEEecCCceeEEEEEeec
Q psy12303        331 DVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDK-FYLILEPEMVNVSFWYLP  406 (480)
Q Consensus       331 ~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g-~~~~~~~~~~~v~f~~~~  406 (480)
                             ++   .+.+....++.++|+.+..+   +..++..++.++|.+.|++.   .+- ..+.. . .+++.+.+..
T Consensus       300 -------T~---~gnpl~~Aaala~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r-~-~g~~gi~~~~  364 (428)
T PRK12389        300 -------TM---AGNPASMAAGIACLEVLQQE---GVYEKLDRLGAMLEEGILEAAEKHGITITINR-L-KGALTVYFTD  364 (428)
T ss_pred             -------CC---ccCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEe-c-CcEEEEEEeC
Confidence                   00   11112333344445544322   35667777788877777641   221 22211 1 1233333332


Q ss_pred             CccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        407 TRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       407 ~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      ............+  ......+.+.+.++|.++ .+.   + .+.+.   ++..+|++||+++++++++.++++
T Consensus       365 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~Gv~~-~~~---~-~~~~~---~~l~~t~e~id~~~~~l~~~l~~~  428 (428)
T PRK12389        365 EKVTNYDQAERSD--GEAFGKFFKLMLNQGINL-APS---K-YEAWF---LTTAHTEEDIEETLEAVDRAFAQL  428 (428)
T ss_pred             CCCCChhhhcccC--HHHHHHHHHHHHHCCcEe-ecC---C-CCCee---ecCCCCHHHHHHHHHHHHHHHHhC
Confidence            1111000000000  011246778888898544 321   1 12222   557889999999999999987653

>PRK06148 hypothetical protein; Provisional

Probab=99.70  E-value=6.5e-14  Score=152.52  Aligned_cols=320  Identities=16%  Similarity=0.115  Sum_probs=191.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      .+.+.++.+.+++++..+-..+.|++||||||..|++.||..       +|.     +.+|......|.....+....+.
T Consensus       662 ~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~-------tGr-----~~ii~~~~~YHG~t~~a~s~s~~  729 (1013)
T PRK06148        662 HDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAH-------TGQ-----RDAIVLDHAYHGTTTELIDLSPY  729 (1013)
T ss_pred             CHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHh-------cCC-----CeEEEEcCCccCCCcchhhcCch
Confidence            445566778888887543356899999999999999999874       232     22455555667665544443221


Q ss_pred             --------C-CCCeEEeeCCCC----CC-CC-------HHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHH
Q psy12303        191 --------G-TDNCVEVPSDKR----GR-LI-------PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEE  245 (480)
Q Consensus       191 --------~-~~~v~~v~~~~~----~~-~d-------~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~  245 (480)
                              + ...+..++....    +. -+       .+.+++.++.....+..+++|++.......|.+.|    +++
T Consensus       730 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~  809 (1013)
T PRK06148        730 KFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLRE  809 (1013)
T ss_pred             hhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHH
Confidence                    1 112333322111    11 11       24566666543333456899999999888888876    999


Q ss_pred             HHHHHHHcCcEEEeeccccccccccc-cccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccc
Q psy12303        246 IADICQKYNMWLHVDAAWGGGLLLSK-KYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLF  324 (480)
Q Consensus       246 I~~i~~~~~~~l~vD~a~~~~~~~~~-~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~  324 (480)
                      |.++|++||+.+|+|+++.|+..... .+.. ...|+ .+|++++  .|.++++++.|+++.+ +++...... . .+..
T Consensus       810 lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~-e~~gv-~PDivt~--gK~lggG~Plgav~~~-~ei~~~~~~-g-~~~~  882 (1013)
T PRK06148        810 VYAMVRAAGGVCIADEVQVGFGRVGSHWWAF-ETQGV-VPDIVTM--GKPIGNGHPMGAVVTT-REIADSFDN-G-MEYF  882 (1013)
T ss_pred             HHHHHHHhCCEEEEEecccCCCCCCCcchhh-hhcCC-Ccceeee--cccccCCcceEEEEEc-HHHHhhccC-C-Cccc
Confidence            99999999999999999987755443 3333 34466 6899885  6999988999999976 344332211 0 0000


Q ss_pred             ccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC-CCeEEecC--CceeEEE
Q psy12303        325 MQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP-DKFYLILE--PEMVNVS  401 (480)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~-~g~~~~~~--~~~~~v~  401 (480)
                      +            ++   .+.+....+..++|+.+..+   ++.++..++.++|.+.|++ + ....++..  -.+.++.
T Consensus       883 ~------------Tf---~gnpla~aaa~a~L~~i~~e---~l~~~~~~~G~~l~~~L~~-l~~~~~~i~~VrG~Gl~~g  943 (1013)
T PRK06148        883 N------------TF---GGNPVSCAIGLAVLDIIEDE---DLQRNALEIGNYLLAGLRE-LQDRFDIIGDVRGMGLFLG  943 (1013)
T ss_pred             c------------CC---CCCHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHH-HHHhCCCceEEeeeceEEE
Confidence            0            00   12222333344444444333   3556677777777777765 3 11112211  1222333


Q ss_pred             EEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        402 FWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       402 f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.+..........       ......+.+.+.++|+++. +....  .+++|+. ++..+|++|||+++++|++.+++
T Consensus       944 vel~~~~~~~~~~-------~~~~~~i~~~~~~~Gvl~~-~~g~~--~~vlr~~-Ppl~it~~~id~~l~~l~~~l~~ 1010 (1013)
T PRK06148        944 IELVTDRKTKAPA-------TAIARYVKNGARERGILIG-TEGPH--DNVLKIR-PPLIFSRADADHLLEVLDDVLAA 1010 (1013)
T ss_pred             EEecCCccccCcc-------HHHHHHHHHHHHhCCeEEe-ccCCC--CCEEEEe-CCccCCHHHHHHHHHHHHHHHHH
Confidence            4333211000000       0123567788889995543 22111  4799999 99999999999999999988764

>PRK07483 hypothetical protein; Provisional

Probab=99.70  E-value=7.4e-14  Score=139.35  Aligned_cols=331  Identities=15%  Similarity=0.119  Sum_probs=187.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEe-cCCCchhHHHHHHHcCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFT-SDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~-~~~~h~s~~~~~~~~g~  190 (480)
                      +...++.+.+++++......+.|+++||+|+..|++.||...    ..+|.   +++.+|+. ....|.....+....|.
T Consensus        73 ~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~----~~~g~---~~r~~Ii~~~~~YHG~t~~a~s~s~~  145 (443)
T PRK07483         73 EPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYF----VEIGQ---PQRRHFIARRQSYHGNTLGALAIGGN  145 (443)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHHHHHHH----HhcCC---CCCcEEEEECCCcCCcCHHHhhhcCC
Confidence            445567778888764323469999999999999999998742    11232   22334444 55667766555554331


Q ss_pred             C---------CCCeEEeeCCCCCCC-----C--------HHHHHHHHHHHHHCCCccEEEEeccCCC-ccccccC----h
Q psy12303        191 G---------TDNCVEVPSDKRGRL-----I--------PSELERLVLERKAKGDIPFFVNCTSGTT-VLGAFDP----I  243 (480)
Q Consensus       191 ~---------~~~v~~v~~~~~~~~-----d--------~~~L~~~i~~~~~~~~~~~~v~~~~~~~-~~G~~~~----l  243 (480)
                      .         ...+..+|....++-     +        ++++++++...  ....+++|++...+. ..|.+.|    +
T Consensus       146 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvivEPiqg~~gG~~~~~~~fl  223 (443)
T PRK07483        146 AWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILEL--GPDTVAAFVAETVVGATAGAVPPVPGYF  223 (443)
T ss_pred             cccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhc--CCCceEEEEEeCcccCcCCeEeCCHHHH
Confidence            1         112333433211111     1        24555555421  223488999988875 3476654    8


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCccc
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSAEY  322 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~  322 (480)
                      ++|.++|++||+++|+|+++.|+......+.+ ...++ .+|++++  .|.+++++ +.|+++++++ +.+.... ....
T Consensus       224 ~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~-~~~gv-~PDiv~~--gK~l~gG~~Pi~av~~~~~-i~~~~~~-~~~~  297 (443)
T PRK07483        224 KRIREVCDRYGVLLILDEVMCGMGRTGTLFAC-EEDGV-APDLVTI--AKGLGAGYQPIGAVLASDR-IYDAIAD-GSGF  297 (443)
T ss_pred             HHHHHHHHHhCCEEEEecceeCcccCcHHHHH-hhcCC-CCCeeee--hhhhccCccccEEEEEcHH-HHHHHhc-CCCc
Confidence            99999999999999999999987665544443 34456 6899995  69998875 8899887654 3332211 1111


Q ss_pred             ccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeE
Q psy12303        323 LFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVN  399 (480)
Q Consensus       323 l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~  399 (480)
                      +.+.          .++   .+.+....++.++|+.+-.   ....++..++.++|.+.|++.   .+.+.-+ .-...+
T Consensus       298 ~~h~----------~T~---~gnpl~~aaa~a~l~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-RG~Glm  360 (443)
T PRK07483        298 FQHG----------HTY---LGHATACAAALAVQRVIAE---DGLLANVRARGEQLRARLRERLGQHPHVGDI-RGRGLF  360 (443)
T ss_pred             cccC----------CCC---CCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHhcCCCeeeE-eecccE
Confidence            1110          000   1111223333334444332   345566777777777777541   2322111 122233


Q ss_pred             EEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeee-eCC-cccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        400 VSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQP-LND-LPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       400 v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~-~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      +.+.+.......... +...   .....+.+.+.++|.++..... ..+ ..+.+|+. +....|++|||+++++|++.+
T Consensus       361 ~gie~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~-PpL~it~~eid~~~~~l~~~l  435 (443)
T PRK07483        361 VGVELVADRATKAPF-DPAL---KLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLA-PPFIITAAQIDEIVERLGDAI  435 (443)
T ss_pred             EEEEEeecccccCCC-Cchh---hHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEE-CCCCCCHHHHHHHHHHHHHHH
Confidence            334332211000000 0000   1134677888999966543211 001 13689999 999999999999999999877


Q ss_pred             cc
Q psy12303        478 HD  479 (480)
Q Consensus       478 ~~  479 (480)
                      ++
T Consensus       436 ~~  437 (443)
T PRK07483        436 DA  437 (443)
T ss_pred             HH
Confidence            54

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.70  E-value=1.5e-14  Score=140.19  Aligned_cols=282  Identities=11%  Similarity=0.062  Sum_probs=172.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC-
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL-  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~-  190 (480)
                      +...++.+.+++++|.+  .++|+++||+|+..|+++++..       +|.     +.+|..+...|.....+....+. 
T Consensus        66 ~~~~~la~~l~~~~~~~--~v~~~~SGseA~e~Alklar~~-------~gr-----~~Ii~~~~syHG~t~~~ls~~~~~  131 (364)
T PRK04013         66 EEKEEMLEELSKWVNYE--YVYMGNSGTEAVEAALKFARLY-------TGR-----KEIIAMTNAFHGRTMGALSATWKP  131 (364)
T ss_pred             HHHHHHHHHHHhhcCCC--EEEEeCchHHHHHHHHHHHHHH-------hCC-----CEEEEECCccccCchhhccCCCCc
Confidence            33445666677777664  5999999999999999999874       221     32455555566665554443221 


Q ss_pred             ------C--CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc-C---hHHHHHHHHHcCcEEE
Q psy12303        191 ------G--TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD-P---IEEIADICQKYNMWLH  258 (480)
Q Consensus       191 ------~--~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~-~---l~~I~~i~~~~~~~l~  258 (480)
                            +  ...+..+|.+     |++++++.+.+.      +++|+++..+...|.+. |   +++|.++|++||++++
T Consensus       132 ~~~~~~~p~~~~~~~~~~~-----d~~~l~~~i~~~------~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI  200 (364)
T PRK04013        132 KYREDFEPLVPGFKHIPFN-----DVEAAKEAITKE------TAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLI  200 (364)
T ss_pred             ccccCCCCCCCCcEEecCC-----CHHHHHHHhcCC------cEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence                  1  1123334333     678888887643      89999999888777764 4   9999999999999999


Q ss_pred             eeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCC
Q psy12303        259 VDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGD  338 (480)
Q Consensus       259 vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  338 (480)
                      +|+++.+. .....+.. ...++ .+|++++  .|.+++++++|.++.+.. . .      ...  +.          .+
T Consensus       201 ~DEv~tG~-RtG~~~a~-~~~gv-~PDiv~~--gK~lggG~P~~a~~~~~~-~-~------~~~--~~----------~T  255 (364)
T PRK04013        201 ADEVQSGL-RTGKFLAI-EHYKV-EPDIVTM--GKGIGNGVPVSLTLTNFD-V-E------RGK--HG----------ST  255 (364)
T ss_pred             EechhhcC-CCCchhHH-HhcCC-CCCEEEe--cccccCCceeEEEEeccc-c-c------CCC--cC----------CC
Confidence            99999976 54443333 33455 6899985  699988788888886543 1 0      000  00          00


Q ss_pred             ccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHH
Q psy12303        339 KVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRL  418 (480)
Q Consensus       339 ~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~  418 (480)
                      +   .+.+....+..++|+.+-.+++.+..++   .   + ..+..  +.+.-+ .-.+.++.+.+..+           
T Consensus       256 ~---~gnp~~~aaa~a~l~~i~~~~l~~~~~~---~---l-~~l~~--~~v~~v-RG~Gl~~gve~~~~-----------  311 (364)
T PRK04013        256 F---GGNPLACKAVAVTLRILRRERLVEKAGE---K---F-IEIKG--ERVVTT-RGRGLMIGIVLKKP-----------  311 (364)
T ss_pred             C---CcCHHHHHHHHHHHHHHHhccHHHHHHH---H---H-HHhcc--Ccceee-eeCcEEEEEEeCCc-----------
Confidence            0   1222333444445555544444333322   2   2 22222  221111 11122233322110           


Q ss_pred             HHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        419 NILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       419 ~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                            ...+.+.+.++|.++ ..   .+ .+.+|+. +....|++|+++++++|++.+++
T Consensus       312 ------~~~i~~~~~~~Gll~-~~---~g-~~vlr~~-Ppl~it~~~i~~~~~~l~~~l~~  360 (364)
T PRK04013        312 ------VGKYVEELQNRGYLV-HT---AG-QRVIRLL-PPLIISKDTMEEAKSAIEGVIND  360 (364)
T ss_pred             ------HHHHHHHHHhCCcEE-ee---CC-CCEEEEe-CCcccCHHHHHHHHHHHHHHHHH
Confidence                  135677888888554 22   13 4789999 99999999999999999988754

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.70  E-value=5.8e-14  Score=140.62  Aligned_cols=322  Identities=14%  Similarity=0.090  Sum_probs=187.7

Q ss_pred             HHHHHHHHHHHHHHhCCCC--CCe-EECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH
Q psy12303        111 ILMETVVLEKMRQIIGWQG--GDS-ILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV  187 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~--~~~-~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~  187 (480)
                      +..+.++.+.++++++...  ... ++++|||+|+..|++.+|..       .|.     +.+|......|.....+...
T Consensus       100 ~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~-------tgr-----~~Ii~~~~~yHG~t~~als~  167 (459)
T PRK06931        100 TPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTY-------TGR-----SNVISFSGGYHGMTHGALAV  167 (459)
T ss_pred             CHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHh-------cCC-----CeEEEECCCcCCccHHHHhh
Confidence            4566677888888875322  124 55689999999999999875       221     22444555667666666654


Q ss_pred             cCCC---------CCCeEEeeCCCCCC--------CCHHHHHHHHHHHHH----CCCccEEEEeccCCCccccccC----
Q psy12303        188 CGLG---------TDNCVEVPSDKRGR--------LIPSELERLVLERKA----KGDIPFFVNCTSGTTVLGAFDP----  242 (480)
Q Consensus       188 ~g~~---------~~~v~~v~~~~~~~--------~d~~~L~~~i~~~~~----~~~~~~~v~~~~~~~~~G~~~~----  242 (480)
                      .+..         ...+..+|.....+        -+.+.+++.+++..+    ....+++|++...+...|.+.|    
T Consensus       168 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~y  247 (459)
T PRK06931        168 TGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEW  247 (459)
T ss_pred             cCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHH
Confidence            3311         11344555432111        123445444443322    2345899999999888887754    


Q ss_pred             hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccc
Q psy12303        243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEY  322 (480)
Q Consensus       243 l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~  322 (480)
                      ++++.++|++||+++|+|+++.|+......+.+ ...++ .+|++++  .|.+++++++|++..++.  +...   .+..
T Consensus       248 l~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~-~~~gv-~PDivt~--gK~l~gG~Pi~av~~~~~--~~~~---~~~~  318 (459)
T PRK06931        248 LQKIREVTQKHGILLIVDEVQAGFARTGKMFAF-EHAGI-EPDIIVM--SKAVGGGLPLAVLGIKKE--FDAW---QPGG  318 (459)
T ss_pred             HHHHHHHHHHcCCEEEEecchhcCCcCchHHHh-hhcCC-CCCEEEe--cccccCCcceeeeeeHHH--Hhhc---cCCC
Confidence            899999999999999999999988665544444 44566 6999995  699988888998776532  2221   1111


Q ss_pred             ccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeE
Q psy12303        323 LFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVN  399 (480)
Q Consensus       323 l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~  399 (480)
                      ..            +  ++ .+.+....++.++|+.+..+   ...++..++.++|.+.|++.   .|.+.-+ .-.+.+
T Consensus       319 ~~------------~--T~-~gnpla~aaala~L~~l~~~---~l~~~~~~~G~~l~~~L~~l~~~~~~i~~v-rG~Glm  379 (459)
T PRK06931        319 HT------------G--TF-RGNQLAMATGLTTLKILKEE---NLAQNAAERGEWLKAQLAELQKRYPCIGNV-RGRGLM  379 (459)
T ss_pred             CC------------C--CC-CCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhCCCeEeE-ecCceE
Confidence            00            0  00 12222333334444444332   34566666677776666551   2322111 122334


Q ss_pred             EEEEeecCc-cCCCc-hhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        400 VSFWYLPTR-VRNMP-HEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       400 v~f~~~~~~-~~~~~-~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      +.+.+.... ..+.. ......   .....+...+.++|.++... .. . .+.+|+. ++..+|++||+++++++++.+
T Consensus       380 ~giel~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Gvl~~~~-~~-~-~~~l~~~-Ppl~it~~eid~~~~~l~~~l  452 (459)
T PRK06931        380 IGIEIVDERQPADAMGSYPADG---ELAAAIQKACFENGLLLERG-GR-N-GNVVRLL-PPLLITQAECEEFIDRFEQAL  452 (459)
T ss_pred             EEEEEccCcccccccccCCccH---HHHHHHHHHHHHCCcEEeec-CC-C-CCEEEEE-CCCCcCHHHHHHHHHHHHHHH
Confidence            444443221 00000 000000   12346778888899654322 11 1 4689999 999999999999999999876


Q ss_pred             cc
Q psy12303        478 HD  479 (480)
Q Consensus       478 ~~  479 (480)
                      ++
T Consensus       453 ~~  454 (459)
T PRK06931        453 LA  454 (459)
T ss_pred             HH
Confidence            53

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.69  E-value=6.7e-14  Score=138.75  Aligned_cols=310  Identities=10%  Similarity=-0.011  Sum_probs=178.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCce-EEEecCCCchhHHHHHHHcCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQL-VMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~-~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      +...++.+.++++++.+-+.+.|+++||+|+..|++.||...    ...|.   +++. +|......|.....+....+-
T Consensus        83 ~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~----~~~g~---~~r~~ii~~~~~yHG~t~~als~~~~  155 (422)
T PRK05630         83 EPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYS----KGQGH---PERTRLLTWRSGYHGDTFAAMSVCDP  155 (422)
T ss_pred             HHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHH----HhcCC---CCCcEEEEECCCcCCccHHHhccCCC
Confidence            444567777888765333579999999999999999998741    11232   2232 455555667665555544331


Q ss_pred             C----------CCCeEEeeCCCCCCCCH-------HHHHHHHHHHHHCCCccEEEEeccC-CCcccccc----ChHHHHH
Q psy12303        191 G----------TDNCVEVPSDKRGRLIP-------SELERLVLERKAKGDIPFFVNCTSG-TTVLGAFD----PIEEIAD  248 (480)
Q Consensus       191 ~----------~~~v~~v~~~~~~~~d~-------~~L~~~i~~~~~~~~~~~~v~~~~~-~~~~G~~~----~l~~I~~  248 (480)
                      .          ...+..+|.......+.       +.+++.+.+      .+++|+++.. +...|.+.    .+++|.+
T Consensus       156 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~  229 (422)
T PRK05630        156 EGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLIDE------TVAAIIIEPIVQGAGGMRFHDVALIEGVRT  229 (422)
T ss_pred             cccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHhh------ceEEEEEechhcCcCCcccCCHHHHHHHHH
Confidence            0          01234444332111122       233333332      3889999874 67777653    3899999


Q ss_pred             HHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcC-Cccccccc
Q psy12303        249 ICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQM-SAEYLFMQ  326 (480)
Q Consensus       249 i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~-~~~~l~~~  326 (480)
                      +|++||+++|+|+++.++......+.. ...++ .+|+++  +.|.+++++ +.|++++++. ..+..... ....+.+.
T Consensus       230 lc~~~g~llI~DEv~tG~GrtG~~~a~-~~~gv-~PDi~t--~gK~l~gG~~p~~av~~~~~-i~~~~~~~~~~~~~~h~  304 (422)
T PRK05630        230 LCDKHDILLIADEIATGFGRTGELFAT-LAAGV-TPDIMC--VGKALTGGFMSFAATLCTDK-VAQLISTPNGGGALMHG  304 (422)
T ss_pred             HHHHcCCEEEEecceeCCCcCchhhHH-HhcCC-CCCeee--eechhhcCccccceeeccHH-HHHHHhccCCCCccccC
Confidence            999999999999999876544333222 23455 689987  579997663 6777776543 33322110 00000000


Q ss_pred             ccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEecCCceeEEEEE
Q psy12303        327 DKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP---DKFYLILEPEMVNVSFW  403 (480)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~---~g~~~~~~~~~~~v~f~  403 (480)
                                .++   .+.+....++.++++.+..+   ...++..++.++|.+.|++ +   |.+.-+ .-.+.++.+.
T Consensus       305 ----------~T~---~g~Pla~aaa~aaL~~l~~~---~~~~~~~~~g~~l~~~L~~-l~~~~~v~~v-Rg~Gl~~~ie  366 (422)
T PRK05630        305 ----------PTF---MANPLACAVAHASLEIIETG---MWRKQVKRIEAELIAGLSP-LAHLPGVADV-RVLGAIGVVE  366 (422)
T ss_pred             ----------CCC---cCCHHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHH-hhcCCCeeee-eccccEEEEE
Confidence                      011   11112333344445554332   3456777777888776664 3   322211 1122333333


Q ss_pred             eecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        404 YLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       404 ~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +..+. .              ...+.+.+.++|.++ ..   .  .+++|+. +....|++|||++++.|++.+++
T Consensus       367 ~~~~~-~--------------~~~~~~~~~~~Gl~~-~~---~--g~~l~~~-PpL~it~~~i~~~~~~l~~al~~  420 (422)
T PRK05630        367 MEQPV-D--------------MEEATQAAVDHGVWL-RP---F--GRLVYVM-PPYITTSEQIAQICAALAAAVKA  420 (422)
T ss_pred             ECCcc-c--------------HHHHHHHHHHCCeEE-Ee---c--CCEEEEE-CCccCCHHHHHHHHHHHHHHHhc
Confidence            32110 0              135667888898544 32   1  2689999 99999999999999999988753

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.69  E-value=8.2e-14  Score=139.95  Aligned_cols=318  Identities=14%  Similarity=0.099  Sum_probs=180.0

Q ss_pred             HHHHHHHHHHHHHHhCCCC-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQG-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .+.+.++.+.++++++.+. ..+.|+++||+|+..|++.||..       .|.     +.+|-.....|.....+....+
T Consensus        96 ~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~-------tgr-----~~ii~~~~~yHG~t~~~ls~~~  163 (451)
T PRK06918         96 YEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKY-------TKR-----QGIISFSRGFHGRTLMTMTMTS  163 (451)
T ss_pred             cHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHH-------hCC-----CcEEEECCCcCccchhhhhhcC
Confidence            3555677888888875432 37999999999999999999874       221     2245555566776666654433


Q ss_pred             C--------C--CCCeEEeeCCCC----CCCC--------HHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----h
Q psy12303        190 L--------G--TDNCVEVPSDKR----GRLI--------PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----I  243 (480)
Q Consensus       190 ~--------~--~~~v~~v~~~~~----~~~d--------~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l  243 (480)
                      .        +  ...+..+|....    ..+.        ++.+++.+... ..+..+++|+++..+...|.+.|    +
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iAavi~EPi~g~gG~~~~~~~~l  242 (451)
T PRK06918        164 KVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISE-VAPETIAAVVMEPVQGEGGFIVPSKKFV  242 (451)
T ss_pred             CCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhh-cCCCceEEEEECcccCCCCCccCCHHHH
Confidence            1        0  112344443211    0111        12233333211 12345889999988777787544    8


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccc
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYL  323 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l  323 (480)
                      ++|.++|++||+++++|++|.++......+.. ...++ ..|+++  +.|.+++++++|+++.+. ++.+....   ...
T Consensus       243 ~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~-~~~~v-~pDi~t--~sK~l~~G~pig~v~~~~-~i~~~~~~---~~~  314 (451)
T PRK06918        243 QEVRNICSEHGILFVADEIQTGFARTGKYFAI-EHFDV-VPDLIT--VSKSLGAGVPISGVIGRK-EIMDESAP---GEL  314 (451)
T ss_pred             HHHHHHHHHcCCEEEEeccccCcCccCceehh-HhcCC-CCCEEe--eehhhcCCCccEEEEEcH-HHHhccCC---CCc
Confidence            99999999999999999999887553322211 12233 467664  679999888999998753 34332211   000


Q ss_pred             cccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeEE
Q psy12303        324 FMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVNV  400 (480)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~v  400 (480)
                       .           .++   ++......++.+++..+..+.   ..++..++.+++.+.|++.   .+.+.-+ .+.+.++
T Consensus       315 -~-----------~T~---~g~~l~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~l~~l~~~~~~~~~v-rg~G~~~  375 (451)
T PRK06918        315 -G-----------GTY---AGSPLGCAAALAVLDIIEKEN---LNDRAIELGKVVMNRFEEMKNKYNCIGDV-RGLGAMC  375 (451)
T ss_pred             -C-----------cCC---CcCHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHhhCCCceee-ccceeEE
Confidence             0           000   111122223333444432223   3345555556666655540   2322222 2345555


Q ss_pred             EEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        401 SFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       401 ~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+.+........+...       ....+.+.+.++|.++... ...  .+++|++ ++...|+++|++++++|++.+++
T Consensus       376 ~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~Gvlv~~~-~~~--~~~lrl~-p~l~~t~~~id~~l~~l~~~l~~  443 (451)
T PRK06918        376 AFELVQDRKTKEPDKT-------LTANICKEANKRGLLLLSA-GTY--GNVIRVL-MPLVITDEQLEEGLTIIEESLQA  443 (451)
T ss_pred             EEEEccCCCcCCCcHH-------HHHHHHHHHHHCCeEEeec-CCC--CCEEEEE-CCCccCHHHHHHHHHHHHHHHHH
Confidence            5544311100000001       1245677888899655432 211  3689999 77778999999999999987754

>KOG1404|consensus

Probab=99.69  E-value=1e-13  Score=127.72  Aligned_cols=311  Identities=15%  Similarity=0.101  Sum_probs=195.2

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCe
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNC  195 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v  195 (480)
                      ++++.|.+++--+-..++|++||||||.+||+++|..       .|.     -..|-.....|.+...++.+-+++..+.
T Consensus        96 ~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Y-------t~~-----~diIa~r~~YHG~t~~t~glt~~~~~k~  163 (442)
T KOG1404|consen   96 DLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLY-------TGN-----LDIIARRNSYHGNTLYTLGLTGLSPWKQ  163 (442)
T ss_pred             HHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHh-------cCC-----ceEEEeeccccCCchhhcccccCCcccc
Confidence            4556677776655556999999999999999999986       222     1255566667888777777766643322


Q ss_pred             EEeeC--------CCC---C--CC-----CHHHHHHHHHHHHH--CCCccEEEEeccCCCccccccC----hHHHHHHHH
Q psy12303        196 VEVPS--------DKR---G--RL-----IPSELERLVLERKA--KGDIPFFVNCTSGTTVLGAFDP----IEEIADICQ  251 (480)
Q Consensus       196 ~~v~~--------~~~---~--~~-----d~~~L~~~i~~~~~--~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~  251 (480)
                      ...-.        +++   +  .=     .-+.+.+.+++-..  ....+++.++...+...|.+.+    +++..++|+
T Consensus       164 ~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~  243 (442)
T KOG1404|consen  164 NFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVR  243 (442)
T ss_pred             cCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHH
Confidence            11100        010   0  00     12334443333221  1234788999999988898866    899999999


Q ss_pred             HcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccC
Q psy12303        252 KYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYD  331 (480)
Q Consensus       252 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  331 (480)
                      ++|..++.|+++.++......+.+ .-.++ -.|++++  .|.++.+.+.|.+++.. ++......... +++..     
T Consensus       244 k~Ggl~IaDEVqtGfGRtG~~wgf-e~h~v-~PDIvTm--AKgiGnG~Pl~AVvtt~-EIa~v~~~~~~-~fnTy-----  312 (442)
T KOG1404|consen  244 KRGGLFIADEVQTGFGRTGHMWGF-ESHGV-VPDIVTM--AKGIGNGFPLGAVVTTP-EIADVLNQKSS-HFNTY-----  312 (442)
T ss_pred             HcCCEEEehhhhhccccccccccc-cccCC-CccHHHH--HhhccCCCcceeeecCH-HHHHHHHhccc-ccccc-----
Confidence            999999999999999887666555 45555 6899984  59999999999999754 44443332222 22110     


Q ss_pred             cccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCcee--EEEEEeecCcc
Q psy12303        332 VRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMV--NVSFWYLPTRV  409 (480)
Q Consensus       332 ~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~--~v~f~~~~~~~  409 (480)
                                 .+.+.......+.|+.+-+   +++.++......||.+.|.+...+.+++++...-  +.-..+.....
T Consensus       313 -----------ggnP~a~avg~aVL~Vike---e~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~  378 (442)
T KOG1404|consen  313 -----------GGNPVACAVGLAVLKVIKE---ENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKS  378 (442)
T ss_pred             -----------CCCchhHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccC
Confidence                       1222233333344444333   5556788889999999998722456777664432  22222222221


Q ss_pred             CCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHH
Q psy12303        410 RNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEM  473 (480)
Q Consensus       410 ~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l  473 (480)
                      +..+.. .     .....+.+.+.+.| +++..+...|  +.+|++ +..-.|++||+.+++..
T Consensus       379 ~~~pp~-~-----~~~~~i~~~cke~G-vlvg~g~i~G--~vfria-PPlciT~edi~f~~~~~  432 (442)
T KOG1404|consen  379 EPKPPA-T-----AEGAVIGEQCKELG-VLVGKGGIHG--NVFRIA-PPLCITKEDIDFAVEYF  432 (442)
T ss_pred             CCCCcc-h-----HHHHHHHHHHHHhC-eeeecccccc--eEEEec-CCeeccHHHHHHHHHHH
Confidence            111111 0     01235678888888 4456655555  599999 98999999998887754

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.69  E-value=5.1e-14  Score=141.03  Aligned_cols=313  Identities=16%  Similarity=0.089  Sum_probs=187.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      ++...++.+.++++++.+...+.|++|||+|+..|++.+|..       .|.     +..|......|.....++...|.
T Consensus       112 ~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~-------tgr-----~~ii~~~~~yHG~t~~a~s~~~~  179 (459)
T PRK06082        112 NETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHI-------TGN-----FKVVSLWDSFHGASLDAISVGGE  179 (459)
T ss_pred             CHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHh-------cCC-----CEEEEEeCCCcCccHHHHhhcCC
Confidence            456667788888888643357999999999999999999864       221     22555666677776556554432


Q ss_pred             C---------CCCeEEeeCCCCCC-----CC------HHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHH
Q psy12303        191 G---------TDNCVEVPSDKRGR-----LI------PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIA  247 (480)
Q Consensus       191 ~---------~~~v~~v~~~~~~~-----~d------~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~  247 (480)
                      .         ...+..+|.....+     .|      ++.|++.+++    ...+++|+++..+...+.+.|   +++|.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~----~~~vAavIvEPv~g~g~~~~~~~yl~~lr  255 (459)
T PRK06082        180 ACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK----EGGIGAFIAEAVRNTDVQVPSKAYWKRVR  255 (459)
T ss_pred             cccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhc----CCCEEEEEECCccCCCCcCCCHHHHHHHH
Confidence            1         01234444321111     11      2446666642    124789999988766333445   89999


Q ss_pred             HHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCCccccccc
Q psy12303        248 DICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMSAEYLFMQ  326 (480)
Q Consensus       248 ~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~l~~~  326 (480)
                      ++|++||+++++|++++|+......+.+ ...|+ .+|+++  +.|.+++++ ++|+++.++. +. ....  ..+. + 
T Consensus       256 ~lc~~~g~llI~DEV~tG~GRtG~~fa~-e~~gv-~PDiv~--~gKgl~gG~~P~~av~~~~~-i~-~~~~--~~~~-~-  325 (459)
T PRK06082        256 EICDKHNVLLIIDEIPNGMGRTGEWFTH-QAYGI-EPDILC--IGKGLGGGLVPIAAMITKDK-YN-TAAQ--ISLG-H-  325 (459)
T ss_pred             HHHHHcCCEEEEechhhCCCccchhhHh-HhhCC-CCCEEE--ecccccCCCCcceEEEEcHH-HH-hhcc--CCCC-C-
Confidence            9999999999999999986554443333 33466 689998  679999874 7888887653 22 1111  0000 0 


Q ss_pred             ccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEecC--CceeEEEEE
Q psy12303        327 DKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD-KFYLILE--PEMVNVSFW  403 (480)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~-g~~~~~~--~~~~~v~f~  403 (480)
                                  .++ .+.+....++.++|+.+..   .+.+++..++.++|.+.|++ +. ...++..  -.+.++.+.
T Consensus       326 ------------~T~-~gnpl~~aaa~a~L~~l~~---~~l~~~~~~~g~~l~~~L~~-l~~~~~~i~~vrG~Gl~~~ve  388 (459)
T PRK06082        326 ------------YTH-EKSPLGCAAALATIEVIEQ---EGLLEKVKADSQFMRERLLE-MKAKYPLIGDVRGIGLLWGVE  388 (459)
T ss_pred             ------------CCC-CcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHH-HHhhCCCeeeeeeccceeEEE
Confidence                        011 1112233333444444422   24567778888888888766 31 1222222  223333443


Q ss_pred             eecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        404 YLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       404 ~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +........    .   .......+...+.++|.++...    + .+.+|++ +...+|++||+++++++++.+++
T Consensus       389 ~~~~~~~~~----~---~~~~~~~~~~~~~~~Gvl~~~~----~-~~~i~~~-Ppl~it~~eid~~~~~l~~~l~~  451 (459)
T PRK06082        389 LVTDRHTKE----R---AYDEAEAVLYRCLNNGLSFKVS----Q-GNVIQLS-PPLIITREELTQALAILEEAIAK  451 (459)
T ss_pred             EccCccccC----c---cHHHHHHHHHHHHhCCCEEEec----C-CCEEEEe-CCCccCHHHHHHHHHHHHHHHHH
Confidence            321110000    0   0011346777888899654321    2 4789999 88899999999999999987654

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.69  E-value=2.4e-14  Score=142.79  Aligned_cols=312  Identities=16%  Similarity=0.115  Sum_probs=178.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG  191 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~  191 (480)
                      ..+.++.+++++++.. ...+.|++||++|+..|++.++..       .|.     +.+|......|.....+....|.+
T Consensus        90 ~~~~~la~~L~~~~~~-~~~v~~~~sGseA~e~Aik~a~~~-------~g~-----~~ii~~~~~yHG~t~~~~~~~~~~  156 (426)
T PRK00062         90 ELEVELAELVIELVPS-IEMVRMVNSGTEATMSAIRLARGY-------TGR-----DKIIKFEGCYHGHADSLLVKAGSG  156 (426)
T ss_pred             HHHHHHHHHHHHhCCC-CCEEEEecCHHHHHHHHHHHHHHH-------hCC-----CeEEEEcCccCCchhhhhhccCcc
Confidence            4455677888887632 246999999999999999999864       121     324555555666543333332210


Q ss_pred             ----------CC------CeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHH
Q psy12303        192 ----------TD------NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQ  251 (480)
Q Consensus       192 ----------~~------~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~  251 (480)
                                ..      .+..+|.     -|++++++.+++.   +.++++|+++......|.+.|    +++|.++|+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~---~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~  228 (426)
T PRK00062        157 AATLGLPDSPGVPEDFAKHTLTAPY-----NDLEAVEELFEEY---GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCD  228 (426)
T ss_pred             ccccCCCCCCCCCcccccceEEcCC-----CCHHHHHHHHHhC---CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHH
Confidence                      00      0111221     2788999888642   234889999988888999988    999999999


Q ss_pred             HcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccC
Q psy12303        252 KYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYD  331 (480)
Q Consensus       252 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  331 (480)
                      +||+++++|++|.++ ........ ...++ ..|+++  +.|.++++++.|+++. ++++..........+...+     
T Consensus       229 ~~~~llI~DEv~~G~-r~g~~~~~-~~~~~-~pDi~~--~gK~l~~G~p~ga~~~-~~~i~~~~~~~~~~~~~~T-----  297 (426)
T PRK00062        229 EHGALLIFDEVMTGF-RVALGGAQ-GYYGV-TPDLTT--LGKIIGGGLPVGAFGG-RREIMEQLAPLGPVYQAGT-----  297 (426)
T ss_pred             HcCCEEEEeechhcc-ccCCccHH-HHhCC-CcchHh--hhhHhhCCCcceeeeE-HHHHHHhhccCCCceeccc-----
Confidence            999999999999876 32222111 22333 467655  6799987777888765 4444443321111111110     


Q ss_pred             cccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEecCCceeEEEEEeecCc
Q psy12303        332 VRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP---DKFYLILEPEMVNVSFWYLPTR  408 (480)
Q Consensus       332 ~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~---~g~~~~~~~~~~~v~f~~~~~~  408 (480)
                             +   ++.+....++.++|..+..+   +..++..++.+++.+.|++ .   .++..-....+.++.+.+.+..
T Consensus       298 -------~---~~~p~~~aaa~a~L~~~~~~---~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~vrg~G~~~~i~l~~~~  363 (426)
T PRK00062        298 -------L---SGNPLAMAAGLATLKLLKEP---GFYEELEALTKRLAEGLKE-AAKKAGIPLTVNRVGSMFGLFFTDEP  363 (426)
T ss_pred             -------C---cCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHH-HHHHcCCceEEEEecceEEEEEecCC
Confidence                   0   11122333444445544222   3556666666666666653 1   1333211234445555443321


Q ss_pred             cCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        409 VRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       409 ~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ..........+  ......+.+.+.++|.+ +.+.   + .+.++++   ..+|++||+++++.+++++++
T Consensus       364 ~~~~~~~~~~~--~~~~~~i~~~l~~~Gv~-v~~~---~-~~~~~~~---~~~t~~ei~~~~~~l~~~l~~  424 (426)
T PRK00062        364 VTNYADAKKSD--TERFARFFHAMLDEGVY-LAPS---Q-FEAGFVS---AAHTDEDIEKTLEAARKAFAA  424 (426)
T ss_pred             Ccchhhhcccc--HHHHHHHHHHHHHCCeE-eecC---C-cCceeee---ccCCHHHHHHHHHHHHHHHHh
Confidence            11000000000  01124677888888844 4432   1 2345654   677999999999999988765

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.68  E-value=6.2e-14  Score=139.46  Aligned_cols=311  Identities=12%  Similarity=0.045  Sum_probs=180.9

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC-ceEEEecCCCchhHHHHHHHcCCC-
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG-QLVMFTSDQCHYSVRSCAAVCGLG-  191 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g-~~~vl~~~~~h~s~~~~~~~~g~~-  191 (480)
                      ..++.+.++++++-+-..+.|+++||+|+..|++.++...    ..+|.   +| ..+|......|.....+....+.. 
T Consensus        90 ~~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~----~~~~~---~~r~~il~~~~~yHG~t~~~~s~~~~~~  162 (427)
T TIGR00508        90 AIELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYW----QAKGE---KNRQKFLTIRSGYHGDTFGAMSVCDPEN  162 (427)
T ss_pred             HHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHH----HhhCC---CCccEEEEEcCCcCCccHhhhcccCCcc
Confidence            3456777888875433579999999999999999998742    11122   22 225566666676655555443321 


Q ss_pred             ---------CCCeEEeeCCCC-C--C---CCHHHHHHHHHHHHHCCCccEEEEeccC-CCccccc----cChHHHHHHHH
Q psy12303        192 ---------TDNCVEVPSDKR-G--R---LIPSELERLVLERKAKGDIPFFVNCTSG-TTVLGAF----DPIEEIADICQ  251 (480)
Q Consensus       192 ---------~~~v~~v~~~~~-~--~---~d~~~L~~~i~~~~~~~~~~~~v~~~~~-~~~~G~~----~~l~~I~~i~~  251 (480)
                               ...+..+|.... .  .   -|++++++.+++.   +..+++|++... +...|.+    ..+++|.++|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~---~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~  239 (427)
T TIGR00508       163 SMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELH---SDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCK  239 (427)
T ss_pred             cccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhc---CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHH
Confidence                     011223322111 1  1   1456677777532   234788888875 5555543    45899999999


Q ss_pred             HcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcCC-cccccccccc
Q psy12303        252 KYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQMS-AEYLFMQDKL  329 (480)
Q Consensus       252 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~~-~~~l~~~~~~  329 (480)
                      +||+.+++|+++.+.......+.. ...++ .+|+++  ..|.+++++ +++.++.++ +......... ..+....   
T Consensus       240 ~~~~llI~DEv~tG~Gr~G~~~~~-~~~~v-~pDi~~--~gK~l~gG~~p~~a~~~~~-~~~~~~~~~~~~~~~~~~---  311 (427)
T TIGR00508       240 QYDILLIADEIATGFGRTGKLFAC-EHAGV-VPDILC--VGKALTGGYMTLSATVTTD-KVAQTISSGEAGCFMHGP---  311 (427)
T ss_pred             HcCCEEEEeccccCCCcCCccchh-hhcCC-CCCEEE--echhhhcCcccceEEEEcH-HHHHHHhcCCCCccccCC---
Confidence            999999999999765333322222 23345 688887  579987764 677777543 3333322110 1111110   


Q ss_pred             cCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC--CceeEEEEEeecC
Q psy12303        330 YDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE--PEMVNVSFWYLPT  407 (480)
Q Consensus       330 ~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~--~~~~~v~f~~~~~  407 (480)
                              ++   .+.+....++.++++.+..+   +..++..++.++|.+.|++ +.....+..  ..+.++.+.+...
T Consensus       312 --------T~---~g~p~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~-l~~~~~i~~vrg~G~~~~i~~~~~  376 (427)
T TIGR00508       312 --------TF---MGNPLACAVAEASLAILLEG---EWQKQVSAIENQLKRELSP-LRKNPVVKDVRVLGAIGVVEMYKP  376 (427)
T ss_pred             --------CC---CcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHH-hhcCCCEEeEeccccEEEEEECCc
Confidence                    00   11123333444455544222   3467888888888888877 422111111  1123333333211


Q ss_pred             ccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        408 RVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       408 ~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .               ....+.++|.++|+++ ...     .+.+|++ ++..+|++|||++++++++.+++
T Consensus       377 ~---------------~~~~~~~~l~~~Gv~~-~~~-----~~~l~~~-ppl~~t~~~id~~~~~l~~~l~~  426 (427)
T TIGR00508       377 V---------------NVEELQKKFVEQGVWI-RPF-----GKLIYVM-PPYIITTEQLQKLTAALIEALHE  426 (427)
T ss_pred             c---------------CHHHHHHHHHHCCeEE-Eec-----CCEEEEE-CCCCCCHHHHHHHHHHHHHHHhc
Confidence            0               0235778888898543 321     2479998 88889999999999999998764

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.68  E-value=1.2e-14  Score=138.88  Aligned_cols=334  Identities=15%  Similarity=0.034  Sum_probs=208.0

Q ss_pred             ccccccCCCC-hHHhHHHHHHHHcCcCC---c---chhcChhhHHHHHHHHHHHHHHhCCCC-CCeE-ECCChhHHHHHH
Q psy12303         75 FMNQLSCGLD-VVSMAGEWLIATANTNM---F---TYEIAPVFILMETVVLEKMRQIIGWQG-GDSI-LAPGGSISNLYA  145 (480)
Q Consensus        75 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~---~---~~~~~~~~~~~e~~~~~~la~~~g~~~-~~~~-~t~ggt~a~~~a  145 (480)
                      -+++.++|.. |..++.++-.+.++.+.   .   ....++.+.++-.++.+.+.++++.|+ ..++ ++.|||.++.++
T Consensus         5 ~~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~   84 (364)
T PRK12462          5 QLNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMI   84 (364)
T ss_pred             cceecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHH
Confidence            4566666544 55666666666666443   1   112357778888899999999999964 4555 455588877766


Q ss_pred             HHHHHHhcCchhHhcCCCccCCceEE-EecCCCchh--HHHHHHHcCCCCCCeEEeeC----CCCCCCCHHHHHHHHHHH
Q psy12303        146 FLAARHKMFPTYKEKGLSAIKGQLVM-FTSDQCHYS--VRSCAAVCGLGTDNCVEVPS----DKRGRLIPSELERLVLER  218 (480)
Q Consensus       146 l~~~~~~~~~~~~~~g~~~~~g~~~v-l~~~~~h~s--~~~~~~~~g~~~~~v~~v~~----~~~~~~d~~~L~~~i~~~  218 (480)
                      ++-...              +|+.++ ++. ..+.+  +.+.++.+|    ++..+..    +.....+++++  .+.++
T Consensus        85 ~~Nll~--------------~g~~~~~~~~-tG~fg~r~~~ea~~~g----~v~~~~~~~~~~~~~~p~~~~~--~~~~d  143 (364)
T PRK12462         85 PMNFSR--------------PGAAAPEYVT-TGYWSRKAIGEASRVA----AMRVVWDGAASGYRTLPSLAEL--DWDAR  143 (364)
T ss_pred             HHHcCC--------------CCCcEEEEEe-CCHHHHHHHHHHHhcC----CceEecCcCCCCCCcCCCHHHh--ccCCC
Confidence            665543              334233 333 24443  334444444    2233321    11223455554  12222


Q ss_pred             HHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc
Q psy12303        219 KAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL  298 (480)
Q Consensus       219 ~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p  298 (480)
                            ...|.+|+..|.+|+..|     ++.+.++.++++|++-+.+..+++..++         |++..+.+|.++ |
T Consensus       144 ------~~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid~~~~---------dvi~agsQKnlg-P  202 (364)
T PRK12462        144 ------APFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFDVEAY---------GMVYAHAQKNLG-P  202 (364)
T ss_pred             ------CcEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCChHHc---------cEEEeeccccCC-C
Confidence                  678999999999999876     3333468999999999988877766543         999999999999 8


Q ss_pred             ccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC-CCchHHHHHHHHhcHH--HHHHHHHHHHHHH
Q psy12303        299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-NDIFKLWLQWRAKGDE--GFEKQIDRLMELA  375 (480)
Q Consensus       299 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~~l~~~g~~--~~~~~~~~~~~l~  375 (480)
                      .|.++++++++.+ .......+.|+.-....     +-. ..+ .+-+ +....+-..++.+-.+  |++++.+++.+.+
T Consensus       203 ~Gltvvivs~~al-~~~~~~~p~~ldy~~~~-----~~~-s~~-nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka  274 (364)
T PRK12462        203 AGVTVAIIRRALL-ERVPDTLPPMLDFRTHV-----EHR-SNY-NTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKA  274 (364)
T ss_pred             CceEEEEECHHHH-hhccccCCchhhHHHHH-----hcC-CCC-CCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            9999999887643 33332223332210000     000 000 0100 1233444455555556  8999999999999


Q ss_pred             HHHHHHHhcCCCCeEEec-C---CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccE
Q psy12303        376 EYMVKKIKSMPDKFYLIL-E---PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNF  451 (480)
Q Consensus       376 ~~l~~~l~~~~~g~~~~~-~---~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~  451 (480)
                      +.+++.+.+ .+++.... .   ....+++|+...+.            +   ..++.+...+.|.+.+..  +.. .+.
T Consensus       275 ~~ly~~id~-~~~~~~~~~~~~~RS~mnv~f~~~~~~------------l---~~~f~~~a~~~gl~~lkG--hr~-vgg  335 (364)
T PRK12462        275 AMLYATLDA-LNEVIDCHAHRAARSTMNVAFRFRQPR------------L---DTLFKEQSTEAGFCGLSG--HRS-IGG  335 (364)
T ss_pred             HHHHHHHHh-CCCcccCCCChhhcCcceEEEEcCCHH------------H---HHHHHHHHHHCCCccccC--Ccc-cCc
Confidence            999999999 77665432 1   23456777532111            2   256677777888554332  222 356


Q ss_pred             EEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        452 FRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       452 ~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      +|.| +....+.++++.|++-+++..+
T Consensus       336 ~Ras-~yna~~~e~v~~L~~fm~~f~~  361 (364)
T PRK12462        336 IRAS-LYNAVSEQAVSRLCAFLKDFAI  361 (364)
T ss_pred             eEEE-cCCCCCHHHHHHHHHHHHHHHH
Confidence            9999 8888999999999999998765

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.68  E-value=6.3e-14  Score=134.97  Aligned_cols=320  Identities=14%  Similarity=0.135  Sum_probs=196.3

Q ss_pred             HHHHHHHHHhCC-CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEe-cCCCchhHHHHHHHcCCCC-
Q psy12303        116 VVLEKMRQIIGW-QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFT-SDQCHYSVRSCAAVCGLGT-  192 (480)
Q Consensus       116 ~~~~~la~~~g~-~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~-~~~~h~s~~~~~~~~g~~~-  192 (480)
                      ++.+.|+++.+- +=+.++|++|||+|+..|+++++...    +.+|.   |++.+++. ...+|.+...++...|... 
T Consensus        91 ~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~----~~~G~---p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~  163 (449)
T COG0161          91 ELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYW----RARGQ---PQRKKFISRRNGYHGDTLGAMSVGGPVAL  163 (449)
T ss_pred             HHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHH----HhcCC---CcceEEEEeccCcCcccchheeccCchhh
Confidence            466778888772 23579999999999999999999863    44554   43434444 4455777666666655211 


Q ss_pred             ---------CCeEEeeCCC------CCCCC------HHHHHHHHHHHHHCC-CccEEEEeccCCCc-cccccC----hHH
Q psy12303        193 ---------DNCVEVPSDK------RGRLI------PSELERLVLERKAKG-DIPFFVNCTSGTTV-LGAFDP----IEE  245 (480)
Q Consensus       193 ---------~~v~~v~~~~------~~~~d------~~~L~~~i~~~~~~~-~~~~~v~~~~~~~~-~G~~~~----l~~  245 (480)
                               ..+..+|...      ++.-+      .++||+.|.+   .| .+++++++...... .|.+.|    +++
T Consensus       164 ~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~---~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~  240 (449)
T COG0161         164 RHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILE---HGPETIAAFIVEPVVGGAGGMLVPPPGYLKR  240 (449)
T ss_pred             hhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHh---cCcccEEEEEecccccccCCcccCChHHHHH
Confidence                     1223333321      12223      3345555444   34 55888888888777 666654    899


Q ss_pred             HHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCccccc
Q psy12303        246 IADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLF  324 (480)
Q Consensus       246 I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~  324 (480)
                      |.+||++||+++|+|++-.|+......+.. ...++ ..|++|+  .|.+.++ .+.|.+++.++ +.+........-+.
T Consensus       241 vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~-e~~gi-~PDi~~~--aKGLT~GY~Pl~a~l~~~~-I~~~~~~~~~~~f~  315 (449)
T COG0161         241 VREICDKYGILLIADEVATGFGRTGKMFAC-EHAGI-VPDILCL--AKGLTGGYLPLSAVLTSDR-IYEAFSDGDAGAFM  315 (449)
T ss_pred             HHHHHHHcCcEEEeecceeCCCcCchhhhh-hhcCC-CCCeeee--cccccccchhhHhHhhhHH-HHHHHhcccCCeec
Confidence            999999999999999999998877666655 55666 7899995  5988776 46788887654 33332221112221


Q ss_pred             ccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC--ceeEEEE
Q psy12303        325 MQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP--EMVNVSF  402 (480)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~--~~~~v~f  402 (480)
                      +.                .+.....+++.+++..+..-.-+.++++..++..+|.+.|++..++...+++.  .+.+..+
T Consensus       316 HG----------------~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~i  379 (449)
T COG0161         316 HG----------------HTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAI  379 (449)
T ss_pred             cC----------------CccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEE
Confidence            21                12223455555555544322224456777788888888887512222333332  2233344


Q ss_pred             EeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        403 WYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+....-..   ..+..   .....+.+.+.++|.++.+.    +  ..+=++ +.+..|+++|+++++.+++.+++
T Consensus       380 Elv~d~~t~---~~f~~---~~~~~~~~~~~e~Gl~iRp~----g--~~i~~~-PPliit~~eid~l~~~l~~al~~  443 (449)
T COG0161         380 ELVADKATK---TPFEA---RVGARVRAAALERGLLIRPL----G--DVIYLM-PPLIITREEIDELVDALREALDE  443 (449)
T ss_pred             EEecccccc---cchhh---hHHHHHHHHHHHCCeEEeec----C--CEEEEc-CCccCCHHHHHHHHHHHHHHHHH
Confidence            443322110   01111   12356778888999554443    2  467777 88899999999999999987753

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.67  E-value=4.4e-14  Score=140.06  Aligned_cols=314  Identities=13%  Similarity=0.088  Sum_probs=177.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH---HHHHH
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR---SCAAV  187 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~---~~~~~  187 (480)
                      +..+.++.+.+.++++.....+.|+++||+|+..|++.||..       +|.     ..+|......|....   .+...
T Consensus        92 ~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~-------tgr-----~~ii~~~~~yHG~td~~~~~~~~  159 (433)
T PRK00615         92 SEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGI-------TGR-----SIIIKFLGCYHGHADTLLQGISF  159 (433)
T ss_pred             CHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHh-------hCC-----CEEEEEcCccCCCCcccCccccc
Confidence            345566778888887654357999999999999999999875       221     223444445566431   12111


Q ss_pred             cCCCCC-------------CeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHH
Q psy12303        188 CGLGTD-------------NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADIC  250 (480)
Q Consensus       188 ~g~~~~-------------~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~  250 (480)
                      .+....             ....+|.     -|+++|++.+++.   +..+++|+++......|.+.|    +++|.++|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~---~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc  231 (433)
T PRK00615        160 SETSLDTLTHLVDTDLAHPLTLSLPY-----NDFQIFQTVMNSL---GHRVAGVIFEPICANMGVVLPKPGFIEGIIQTC  231 (433)
T ss_pred             CCCCcCcCCCCCCCCCCCCCeEeCCC-----CCHHHHHHHHHhc---CCceEEEEECCCCCCCCcccCCHHHHHHHHHHH
Confidence            111000             0111111     2788899888643   234789999999998898877    46999999


Q ss_pred             HHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccccccc
Q psy12303        251 QKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLY  330 (480)
Q Consensus       251 ~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  330 (480)
                      ++||+++++|+++.|+ ........ ...++ ..|+++  +.|.+++++++|+++.++ ++.+........+..+     
T Consensus       232 ~~~g~llI~DEv~tG~-R~G~~ga~-~~~gv-~PDi~~--~gK~lggG~p~~av~~~~-~i~~~~~~~~~~~~~~-----  300 (433)
T PRK00615        232 RRTGSLSIMDEVVTGF-RVAQGGAA-AIYHV-KPDITV--YGKILGGGLPAAAVVAHK-SIMDHLAPEGTIFQAG-----  300 (433)
T ss_pred             HHcCCEEEEEcccccc-cccHhHHH-HhcCC-CCCeEE--EcccccCCcceeeeeecH-HHHhhhcCCCCcccCC-----
Confidence            9999999999999765 32222222 23345 689887  579998767788887654 3443321110001100     


Q ss_pred             CcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEecCCceeEEEEEeecC
Q psy12303        331 DVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP---DKFYLILEPEMVNVSFWYLPT  407 (480)
Q Consensus       331 ~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~---~g~~~~~~~~~~~v~f~~~~~  407 (480)
                             ++   .+.+....+..++|+.+..+   ...++..++.++|.+.|++ .   .++.+.......++.+.+...
T Consensus       301 -------T~---~g~p~~~aa~la~L~~i~~~---~~~~~~~~~g~~l~~~l~~-~~~~~g~~v~~~r~G~~~~i~~~~~  366 (433)
T PRK00615        301 -------TL---SGNPLAMAAGKASINLCREQ---GFYTQLSTLEQNFLSPIEE-MIRSQGFPVSLVRYGSMFSFFFNEN  366 (433)
T ss_pred             -------CC---cccHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHH-HHHHcCCCeEEEeeceEEEEEEeCC
Confidence                   00   11112333444445544332   3456666666676555544 1   233321111344455555432


Q ss_pred             ccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        408 RVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       408 ~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ...+..  .....-.+....+...|.++|.+ +.+.....  .     +.+..+|++|||++++++++.+++
T Consensus       367 ~~~~~~--~~~~~~~~~~~~~~~~l~~~Gv~-~~~~~~~~--~-----~ls~~ht~~did~~~~a~~~~~~~  428 (433)
T PRK00615        367 RPNNLA--EAQLSDIEAFQTFYQSAFSKGVY-LSPSPFEA--S-----FLSSAHSMENLDYAQNVLIDSLEK  428 (433)
T ss_pred             CCCChH--HHhhCCHHHHHHHHHHHHHCCee-ecCccccc--c-----ceecCCCHHHHHHHHHHHHHHHHH
Confidence            211100  00000011234678889999844 33321111  1     255677999999999999998764

>KOG1402|consensus

Probab=99.67  E-value=4.3e-14  Score=127.01  Aligned_cols=305  Identities=14%  Similarity=0.112  Sum_probs=190.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCC--chhHHHHH---
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQC--HYSVRSCA---  185 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~--h~s~~~~~---  185 (480)
                      ...-.+..+.+.++||++.  +.-+++|.||+..|+..+|.+.+   ..+++   |.+..++++...  |.-...+.   
T Consensus       100 nd~~~~f~~~vt~lf~~~k--vlpmnTGaEa~Eta~KLaR~wgy---~~K~i---p~nka~il~~~~nFhGrT~~ais~s  171 (427)
T KOG1402|consen  100 NDVLGEFAEYVTKLFGYDK--VLPMNTGAEAVETACKLARKWGY---RKKNI---PKNKAKILSAENNFHGRTLGAISLS  171 (427)
T ss_pred             hhhHHHHHHHHHHhcCcce--eeecccchhHHHHHHHHHHHHHH---hhccC---CccceeEEEecccccCceeeeEEec
Confidence            4455567788999999987  78889999999999999996532   23343   322233333322  32221111   


Q ss_pred             ----HHcCCCC--C-CeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcC
Q psy12303        186 ----AVCGLGT--D-NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYN  254 (480)
Q Consensus       186 ----~~~g~~~--~-~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~  254 (480)
                          .+.|.|+  . .+..||.+     |.++|+.+++..     ..+++++...+...|.+.|    ++++.++|++|+
T Consensus       172 ~d~ds~~~fgp~~P~~~~~v~Y~-----d~eale~~l~~~-----~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkyn  241 (427)
T KOG1402|consen  172 TDPDSWDGFGPFLPGVVDKVPYG-----DAEALEVALKSP-----NVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYN  241 (427)
T ss_pred             CCcchhhccCCCCCCcceeeccC-----CHHHHHHHhcCC-----CeeEEEeeccccccceEeCCchhHHHHHHHHHhhc
Confidence                1112221  1 25566666     899999999863     3788999999999999865    899999999999


Q ss_pred             cEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcc
Q psy12303        255 MWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVR  333 (480)
Q Consensus       255 ~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  333 (480)
                      ++++.|++|.|.......... ....+ ..|++.  +.|.+.++ ++.++++..+ +++....   +.            
T Consensus       242 vl~I~DEvQTGl~RTGk~la~-d~env-~PDivi--lgKalSGG~~Pvsavl~~~-~im~~~~---pg------------  301 (427)
T KOG1402|consen  242 VLLIADEVQTGLARTGKLLAC-DYENV-RPDIVI--LGKALSGGVYPVSAVLADD-DIMLNIK---PG------------  301 (427)
T ss_pred             EEEEehhhhhcccccCcEEEe-ehhhc-CCCeEE--EeccccCCeeeeEEEEecH-HHHhccC---CC------------
Confidence            999999999998775554433 33444 689888  56888765 6788888654 3332211   11            


Q ss_pred             cCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC-Ce----EEecCCceeEEEEEeecCc
Q psy12303        334 YDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD-KF----YLILEPEMVNVSFWYLPTR  408 (480)
Q Consensus       334 ~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~-g~----~~~~~~~~~~v~f~~~~~~  408 (480)
                          .++  .+...+.++...++..+..-.-+++.++...+...|+.+|.+ ++ .+    ..+ .-.+-...+.+.|..
T Consensus       302 ----eHg--sTyggNpLg~~vaiAalevi~eekL~era~~lG~~l~~~L~~-l~~~~p~~v~~V-RGrGl~~ai~i~~~~  373 (427)
T KOG1402|consen  302 ----EHG--STYGGNPLGCAVAIAALEVIVEEKLVERAAKLGEILRDQLNK-LQKKFPHVVKEV-RGRGLLNAIVINPSK  373 (427)
T ss_pred             ----ccc--cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccccchhhee-eccceEEEEEecccc
Confidence                000  111123334333333332222256678899999999999988 53 22    211 122222233334333


Q ss_pred             cCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        409 VRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       409 ~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .++.+           .-+++-++.+.|.+.-+.   .  .+.+|+. +....+++|+++-+++|++.+.
T Consensus       374 ~~~~~-----------aw~~cl~lk~~g~LAkpt---H--~~IiRfa-PPL~I~e~dl~eg~e~i~k~i~  426 (427)
T KOG1402|consen  374 TSGQD-----------AWDVCLALKENGLLAKPT---H--GNIIRFA-PPLVISEEDLREGIEAIEKTIA  426 (427)
T ss_pred             ccchh-----------HHHHHHcccccccccCCC---C--CCeEEec-CCcccCHHHHHHHHHHHHHHhc
Confidence            22111           123455666777443222   1  3699999 9999999999999999988753

>PRK06149 hypothetical protein; Provisional

Probab=99.67  E-value=2.4e-13  Score=148.13  Aligned_cols=319  Identities=15%  Similarity=0.079  Sum_probs=190.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC-
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL-  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~-  190 (480)
                      ....++.+.+++++..+-..+.|++|||+||..|++.||..       .|.     +..|......|.....+....+- 
T Consensus       624 ~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~-------tgr-----~~ii~~~~~yHG~t~ga~~~s~~~  691 (972)
T PRK06149        624 AAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAA-------SGR-----RDVVSVLEAYHGWTVATDAVSTSI  691 (972)
T ss_pred             HHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHh-------cCC-----CeEEEEeCCCCCcChhHhhhcCCc
Confidence            44556777788887432246999999999999999999864       221     32555666677655444333221 


Q ss_pred             ---------CCCCeEEeeCCCCCC--C---C-----HHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHH
Q psy12303        191 ---------GTDNCVEVPSDKRGR--L---I-----PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIA  247 (480)
Q Consensus       191 ---------~~~~v~~v~~~~~~~--~---d-----~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~  247 (480)
                               ....+..++.....+  .   +     .+++++.++.....+..+++|++.......|.+.|    +++|.
T Consensus       692 ~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~  771 (972)
T PRK06149        692 ADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVY  771 (972)
T ss_pred             cccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHH
Confidence                     011233443322111  1   2     35666666554445566899999999888899888    99999


Q ss_pred             HHHHHcCcEEEeeccccccccccc-cccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccc
Q psy12303        248 DICQKYNMWLHVDAAWGGGLLLSK-KYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQ  326 (480)
Q Consensus       248 ~i~~~~~~~l~vD~a~~~~~~~~~-~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~  326 (480)
                      ++|++||+++|+|+++.|+..... .+.. ...|+ .+|+++  +.|.+++++++|++++++ ++.+....  ..+++++
T Consensus       772 ~lc~~~g~llI~DEV~tGfGRtG~~~~a~-e~~gv-~PDivt--~gK~lg~G~Pl~av~~~~-~i~~~~~~--~~~~~sT  844 (972)
T PRK06149        772 AAVRARGGVCIADEVQVGYGRLGHYFWGF-EQQGV-VPDIIT--MAKGMGNGHPLGAVITRR-EIAEALEA--EGYFFSS  844 (972)
T ss_pred             HHHHHcCCEEEEEeehhcCCccCccchhh-hhcCC-CCCEEE--ecccccCCeeeEEEEEcH-HHHhhhcc--CCcccCC
Confidence            999999999999999976654433 1122 23456 689997  569999878899998764 33332211  0111110


Q ss_pred             ccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeEEEEE
Q psy12303        327 DKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVNVSFW  403 (480)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~v~f~  403 (480)
                                    . .+.+....+..++|..+-.+   ++.++..++.++|.+.|++.   .|-+..+ .-.+.++.+.
T Consensus       845 --------------~-~gnP~~~aaala~L~~i~~e---~l~~~~~~~G~~l~~~L~~l~~~~~~i~~v-rG~Gl~~gve  905 (972)
T PRK06149        845 --------------T-GGSPVSCRIGMAVLDVLREE---KLQENARRVGDHLKARLEALADRHPLIGAV-HGMGLYLGVE  905 (972)
T ss_pred             --------------C-CCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-eecceEEEEE
Confidence                          0 12222333344444443332   45567777777777777651   2222222 1222333343


Q ss_pred             eecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        404 YLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       404 ~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +..........       ......+.+++.++|.++ .+... . .+++|+. +...+|++||++++++|++.+++
T Consensus       906 l~~~~~~~~~~-------~~~~~~i~~~l~~~Gvl~-~~~g~-~-~~vl~~~-Ppl~it~~~id~~~~~l~~~l~~  970 (972)
T PRK06149        906 LVRDRQTLEPA-------TEETAAICDRLLELGVIM-QPTGD-H-LNILKIK-PPLCLDRESADFFVDMLDRVLTE  970 (972)
T ss_pred             EecCcccCCCC-------hHHHHHHHHHHHhCCeEE-eecCC-C-CCEEEEE-CCCcCCHHHHHHHHHHHHHHHHh
Confidence            33211000000       011346788899999554 33211 1 3689998 88899999999999999998754

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.66  E-value=3e-13  Score=135.17  Aligned_cols=314  Identities=13%  Similarity=0.085  Sum_probs=178.9

Q ss_pred             HHHHHHHHHHHhCCCC-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC-C
Q psy12303        114 ETVVLEKMRQIIGWQG-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL-G  191 (480)
Q Consensus       114 e~~~~~~la~~~g~~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~-~  191 (480)
                      ..++.+.+++..+.+. ..++|+++|++|+..|++.++..       .|    + ..+|.++...|.....+...-+. .
T Consensus        86 ~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~-------~~----r-~~iv~~~~~yHG~~~~~~~~~~~~~  153 (425)
T PRK08088         86 YLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAA-------TK----R-SGVIAFTGAYHGRTHYTLALTGKVN  153 (425)
T ss_pred             HHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHH-------hC----C-CeEEEECCccCCccHHHHHhhCCCC
Confidence            3467788888776533 47899999999999999999864       11    1 22566677777776555544321 0


Q ss_pred             ---------CCCeEE--eeCCCCCCCC----HHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHH
Q psy12303        192 ---------TDNCVE--VPSDKRGRLI----PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQK  252 (480)
Q Consensus       192 ---------~~~v~~--v~~~~~~~~d----~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~  252 (480)
                               ...+..  +|.+.++ ++    +++|++.++.. ..+..+++|+++......|.+.+    +++|.++|++
T Consensus       154 ~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~l~~~l~~~-~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~  231 (425)
T PRK08088        154 PYSAGMGLMPGHVYRALYPCPLHG-VSEDDAIASIERIFKND-AAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDE  231 (425)
T ss_pred             ccccCCCCCCCCcEEcCCCccccC-ccHHHHHHHHHHHHHhc-cCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHH
Confidence                     111222  2222221 22    45577777532 12344889999888888787766    8999999999


Q ss_pred             cCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCc
Q psy12303        253 YNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDV  332 (480)
Q Consensus       253 ~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  332 (480)
                      ||+++++|++|++.......... ...++ ..|+  .++.|.++.++++|+++.+ .+..+......   ...       
T Consensus       232 ~~~~lI~Dev~~g~g~~g~~~~~-~~~~~-~pdi--~s~sK~l~~G~rig~v~~~-~~~~~~~~~~~---~~~-------  296 (425)
T PRK08088        232 HGIMLIADEVQTGAGRTGTLFAM-EQMGV-AADL--TTFAKSIAGGFPLAGVTGR-AEVMDAIAPGG---LGG-------  296 (425)
T ss_pred             cCCEEEEeccccCCCcCcchhHH-hhcCC-CCCE--EEEeccccCCCcceeeEec-HHHHhhcCCCC---CCC-------
Confidence            99999999999975332211111 12232 3564  4578999977889999864 33433321100   000       


Q ss_pred             ccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeEEEEEeecCcc
Q psy12303        333 RYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVNVSFWYLPTRV  409 (480)
Q Consensus       333 ~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~v~f~~~~~~~  409 (480)
                           ++   .   ...+...+++..+..-..+++.++.+++.+++.+.|.+.   .|.+.-+..+ +.++.+.+.....
T Consensus       297 -----t~---~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~-G~~~~l~l~~~~~  364 (425)
T PRK08088        297 -----TY---A---GNPIACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELFEDGD  364 (425)
T ss_pred             -----CC---C---cCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecc-ceEEEEEEecCCC
Confidence                 00   1   122233333333221122344455555555555544330   3444333222 3333443321110


Q ss_pred             CCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        410 RNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       410 ~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ......       .....+.+.+.+.|.++.....  . .+.+|++ ++..+++++|++.++.|++.+++
T Consensus       365 ~~~p~~-------~~~~~l~~~~~~~Gv~~~~~~~--~-~~~iRl~-~~~~~t~~ei~~~i~~l~~~l~~  423 (425)
T PRK08088        365 HSKPNA-------KLTAQIVARARDKGLILLSCGP--Y-YNVLRIL-VPLTIEDAQIRQGLEIIAQCFDE  423 (425)
T ss_pred             CCCCCH-------HHHHHHHHHHHhCCCEEecCCC--C-CCEEEEE-CCCCcCHHHHHHHHHHHHHHHHh
Confidence            000000       0135677888899966543211  1 4789999 77788999999999999988754

>PRK07046 aminotransferase; Validated

Probab=99.66  E-value=1.6e-13  Score=136.97  Aligned_cols=313  Identities=17%  Similarity=0.141  Sum_probs=177.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHc--
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVC--  188 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~--  188 (480)
                      ++.+.++.+.++++++.  ..+.|+++||||++.|++.||..       +|.     +.+|-.....|..........  
T Consensus       114 ~~~~~~lAe~l~~~~~~--~~v~F~nSGtEA~e~AlrlAR~~-------TGr-----~~ii~~~g~YHG~~d~~l~~~~~  179 (453)
T PRK07046        114 SEDAAWVGEELARRFGL--PYWQVATTATDANRFVLRWARAV-------TGR-----PKILVFNGCYHGTVDDVFVDLVD  179 (453)
T ss_pred             CHHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHHHHHHh-------hCC-----CEEEEECCCCCCCcHHhHhhccC
Confidence            46677788889998864  35999999999999999999975       232     324445556676543333221  


Q ss_pred             C----------CC---CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHH
Q psy12303        189 G----------LG---TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQ  251 (480)
Q Consensus       189 g----------~~---~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~  251 (480)
                      +          ..   ...+..+|.+     |++++++.+..     ..+++|+++......|.+.|    ++++.++|+
T Consensus       180 ~~~~~~~~~~g~~~~~~~~~~~~~~n-----d~~~l~~~l~~-----~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~  249 (453)
T PRK07046        180 GRPVQRPGLLGQVHDLTATTRVVEFN-----DLAALEAALAD-----GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTR  249 (453)
T ss_pred             CCCCCCCCCCCCCccccCceEeeCCC-----CHHHHHHHhCC-----CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHH
Confidence            1          00   0112233332     78899888842     23889999999888888866    899999999


Q ss_pred             HcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccC
Q psy12303        252 KYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYD  331 (480)
Q Consensus       252 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  331 (480)
                      +||+.+|+|+++. +..-.... . ...++ .+|+++  +.|.+++++++|++..++ ++.............+.     
T Consensus       250 ~~g~llI~DEV~t-fr~g~Gg~-~-~~~gv-~PDi~t--~gK~lggG~Pi~av~g~~-~i~~~~~~~~~~~~~~~-----  317 (453)
T PRK07046        250 RYGTLLVIDETHT-ISSGPGGY-T-RAHGL-EPDFLV--VGKPIAGGVPCAVYGFSA-ELAERAQAAKASAPPGH-----  317 (453)
T ss_pred             HhCCEEEEEcccc-CccCCcch-h-HHhCC-Ccccee--ehhhhcCCCcceeeeehH-HHHHHHhhccccCCCCC-----
Confidence            9999999999986 11101111 1 22355 689998  579999888999888654 44443321100000000     


Q ss_pred             cccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CC-CeEEecCCceeEEEEEeecC
Q psy12303        332 VRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PD-KFYLILEPEMVNVSFWYLPT  407 (480)
Q Consensus       332 ~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~-g~~~~~~~~~~~v~f~~~~~  407 (480)
                       ....+++   .+.+....+..++|+.+..   .+..++..++.++|.+.|++.   .+ ...+.+.  ...+.+.+.+.
T Consensus       318 -~~~~~T~---~gnpl~~aa~~a~L~~l~~---~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~--G~~~~i~~~~~  388 (453)
T PRK07046        318 -SGIGTTL---SANALAMAAMRATLAEVMT---EAAYAHMLALAARLAAGLRAVIARHGLPWHVTRV--GARVEFQFAPT  388 (453)
T ss_pred             -ceeCCCC---cccHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe--CcEEEEEEeCC
Confidence             0000011   1111222333344444322   234556666666666666530   22 1222222  22344444322


Q ss_pred             ccCCCchhhHHHHhh-hhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        408 RVRNMPHEKRLNILG-EITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       408 ~~~~~~~~~~~~~l~-~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ...+.  .+.....+ .+...+...+.++|.++...      .+.++++ +  .+|++||+++++++++.+++
T Consensus       389 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~------~~~~~~~-p--~~t~~did~~~~~~~~~l~~  450 (453)
T PRK07046        389 PPRNG--AEAAAALDPELEAALHLYLLNRGVLITPF------HNMMLVC-P--ATTAADVDRLVAAFDACLGE  450 (453)
T ss_pred             CCCCH--HHHhcccCHHHHHHHHHHHHHCCCEEecc------cCcEEEe-C--CCCHHHHHHHHHHHHHHHHH
Confidence            21110  00000000 12346777888898554321      2467777 4  48999999999999988764

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.66  E-value=5e-14  Score=125.04  Aligned_cols=314  Identities=13%  Similarity=0.144  Sum_probs=183.7

Q ss_pred             CcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCc
Q psy12303        101 MFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH  178 (480)
Q Consensus       101 ~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h  178 (480)
                      .+.|....+...+-+.+...+.+-+|+  .+.++.+|+|+..+.+++......+.     ..|.   . +.+++--.+++
T Consensus        67 ~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~-----sdG~---~-k~illPLaPeY  137 (417)
T COG3977          67 LCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRR-----SDGT---E-KKILLPLAPEY  137 (417)
T ss_pred             HhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCcc-----CCCc---c-eeEeeccChhh
Confidence            456776777778888889999999998  45789999999999998887665431     2232   1 21333333444


Q ss_pred             hhHHHHHHHcCCCCCCeEEeeC----CC----CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccc---cChHHHH
Q psy12303        179 YSVRSCAAVCGLGTDNCVEVPS----DK----RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAF---DPIEEIA  247 (480)
Q Consensus       179 ~s~~~~~~~~g~~~~~v~~v~~----~~----~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~---~~l~~I~  247 (480)
                      ..+..+    |+..+.++.+..    .+    .+++|.++|.  +.+.      +-+|+++-|+||||.+   +.+.+|.
T Consensus       138 iGY~d~----~l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~e~------~g~ic~SRPtNPTGNVlTdeE~~kld  205 (417)
T COG3977         138 IGYADA----GLEEDLFVSAKPNIELLPAGQFKYHVDFEHLH--IGES------TGAICVSRPTNPTGNVLTDEELAKLD  205 (417)
T ss_pred             cccccc----ccCccceeeccCCcccccccceeeccCHHHcc--cccc------cceEEecCCCCCCCCcccHHHHHHHH
Confidence            333222    222222222211    11    3477877774  2333      7899999999999998   4588888


Q ss_pred             HHHHHcCcEEEeecccccccc---ccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccc
Q psy12303        248 DICQKYNMWLHVDAAWGGGLL---LSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLF  324 (480)
Q Consensus       248 ~i~~~~~~~l~vD~a~~~~~~---~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~  324 (480)
                      ++|++||+++++|.|||...-   +.+...  ...   .--+.|+|.+|.+..+..||+++.+ +.......+..     
T Consensus       206 alA~~~giPliIDnAYg~PFP~iifsd~~~--~w~---~NiilC~SLSK~GLPG~R~GIiIan-e~viqaitnmn-----  274 (417)
T COG3977         206 ALARQHGIPLIIDNAYGVPFPGIIFSDATP--LWN---ENIILCMSLSKLGLPGSRCGIIIAN-EKVIQAITNMN-----  274 (417)
T ss_pred             HHhhhcCCcEEEecccCCCCCceecccccc--cCC---CCEEEEeehhhcCCCCcceeEEEcc-HHHHHHHHhcc-----
Confidence            899999999999999997643   222211  111   2236789999999877889998854 44444332111     


Q ss_pred             ccccccCcccCCCCccccCCCCCCchHHHHH----HHHhcHHHHHH-HHHHHHHHHHHHHHHHhcCCCCeEEecCCceeE
Q psy12303        325 MQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQ----WRAKGDEGFEK-QIDRLMELAEYMVKKIKSMPDKFYLILEPEMVN  399 (480)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~----l~~~g~~~~~~-~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~  399 (480)
                                  +..++..+|-..++++-+.    |..+...-++- ..++.+.....++..|-+  +.+.+ .+|++.+
T Consensus       275 ------------~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~--~~~~i-HkpEGAI  339 (417)
T COG3977         275 ------------GIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPE--YRCLI-HKPEGAI  339 (417)
T ss_pred             ------------ceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCc--cceee-ecCCcce
Confidence                        1112222332333322211    11111111111 112222233333333333  33444 5788888


Q ss_pred             EEE-EeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeee--------CCcccEEEEecccCCCCHHHHHHHH
Q psy12303        400 VSF-WYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPL--------NDLPNFFRNIISSAAVTEGDIDFLL  470 (480)
Q Consensus       400 v~f-~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~--------~~~~~~~R~~~~~~~~t~~di~~~~  470 (480)
                      +.| ||..-.+.              +.+++++|.++|.++++...+        ...+.|+|++   +.-+++.|+.-+
T Consensus       340 FlWLWf~dLPIt--------------t~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn---~~~~~~~ie~Gv  402 (417)
T COG3977         340 FLWLWFKDLPIT--------------TEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMN---YVPEPEKIEKGV  402 (417)
T ss_pred             eehhhhccCCCC--------------HHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEEe---cCCCHHHHHHHH
Confidence            875 33322221              468899999999887764322        1225799988   444788888888


Q ss_pred             HHHHHhhc
Q psy12303        471 TEMDRLGH  478 (480)
Q Consensus       471 ~~l~~~~~  478 (480)
                      ..|.+.++
T Consensus       403 a~lae~ve  410 (417)
T COG3977         403 AILAEEVE  410 (417)
T ss_pred             HHHHHHHH
Confidence            88776554

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=99.65  E-value=2.9e-14  Score=133.97  Aligned_cols=314  Identities=14%  Similarity=0.141  Sum_probs=194.0

Q ss_pred             HHHHHHHHHHHHHhCCCC-CCeEECCChh-HHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        112 LMETVVLEKMRQIIGWQG-GDSILAPGGS-ISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~-~~~~~t~ggt-~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .+...+...+-+..|.+. ...+.++.+| +++.+.+.+++.+             |....|+.+...|+|-.+++...|
T Consensus        56 ~ltn~l~~d~~~~~G~~~~~~~~~vP~atgm~l~l~l~~l~~r-------------~~a~~Viw~ridqkSc~kai~~AG  122 (389)
T PF05889_consen   56 KLTNSLVLDALRLAGLRSVKSCFVVPMATGMSLTLCLLALRMR-------------PKAKYVIWPRIDQKSCFKAIERAG  122 (389)
T ss_dssp             HHHHHHHHHHHHHTTHTTHCEEEEESS-HHHHHHHHHHHHHHH-------------CT--EEEEEEEETHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCccccceEEEecccccHHHHHHHHHhcc-------------cCCceEEEeeccccchHHHHHhcC
Confidence            344455555667788875 3466676666 4566666666522             223389999999999999999999


Q ss_pred             CCCCCeEEeeCC--CC-CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC-hHHHHHHHHHcCcEEEeeccccc
Q psy12303        190 LGTDNCVEVPSD--KR-GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP-IEEIADICQKYNMWLHVDAAWGG  265 (480)
Q Consensus       190 ~~~~~v~~v~~~--~~-~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~-l~~I~~i~~~~~~~l~vD~a~~~  265 (480)
                      +   +++.||..  ++ -..|.+.+++++++.   |..+.+.++++.+...|...| +++|+++|++||++.++-+|||.
T Consensus       123 l---~~~vV~~~~~~d~l~td~~~ie~~i~~~---G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgv  196 (389)
T PF05889_consen  123 L---EPVVVENVLEGDELITDLEAIEAKIEEL---GADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGV  196 (389)
T ss_dssp             ----EEEEE-EEEETTEEEEHHHHHHHHHHHH---CGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTT
T ss_pred             C---eEEEeeccCCCCeeeccHHHHHHHHHHh---CCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhh
Confidence            9   77777742  22 356788899988654   445789999999999998855 99999999999999999999998


Q ss_pred             ccccccc-ccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCC
Q psy12303        266 GLLLSKK-YRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCG  344 (480)
Q Consensus       266 ~~~~~~~-~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  344 (480)
                      -.-.+-. ..  .......+|.++-|.-|-+.+|-|.+.+...++..+......-++-...                   
T Consensus       197 Q~~~~~~~i~--~a~~~GRvda~vqS~dkNF~VPvGgai~As~~~~~i~~vs~~YpGRas~-------------------  255 (389)
T PF05889_consen  197 QSSKCMHLIQ--QAWRVGRVDAFVQSTDKNFMVPVGGAIMASFDPSGILAVSKEYPGRASA-------------------  255 (389)
T ss_dssp             T-HHHHHHHH--HHHHHSTCSEEEEEHHHHHCEESSHEEEEESSHHHHHHHHHTSHSHBTS-------------------
T ss_pred             hHHHHHHHHH--HHHhcCCcceeeeecCCCEEecCCCcEEEecCHHHHHHHHHHhhhhhhc-------------------
Confidence            3321110 00  0000115788888888999999888888877776554433211111100                   


Q ss_pred             CCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEecCCceeEEEEEeecCccCCCchhhHHHHh
Q psy12303        345 RHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP---DKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNIL  421 (480)
Q Consensus       345 r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~---~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l  421 (480)
                        ...+....++..+|..++...+....++-.++.+.|++ .   -+-++...|...+. +.+.-..+.....    +..
T Consensus       256 --sp~ld~~itLl~LG~~g~~~ll~~r~~~f~~l~erl~~-~aee~~e~ll~~p~N~is-~a~tl~~l~~~~~----k~~  327 (389)
T PF05889_consen  256 --SPSLDLFITLLSLGCTGYGALLKERKASFPYLKERLKK-WAEEVGERLLETPRNHIS-MAFTLDTLYEISQ----KDG  327 (389)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTEEBSSSTT-SSE-EEEE-TTCCTCCS----SHH
T ss_pred             --ccchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhcCCCCCCee-EEEECccchhhcc----chh
Confidence              13456777888889999999999999888888888765 3   24444443433222 2222111211110    111


Q ss_pred             hhhhHHHHHHHHhcccE---EEeeeeeC------Cc-ccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        422 GEITPILKGRMMQAGTM---MVGYQPLN------DL-PNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       422 ~~~~~~i~~~l~~~g~~---~~~~~~~~------~~-~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                          -.+...|..+|+.   .+.+....      .. ..++-++ .....++||||.++++|+++++
T Consensus       328 ----~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~A-saiG~~~eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  328 ----TFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAA-SAIGMTREEVDYFVKRLDKIIK  389 (389)
T ss_dssp             ----HHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEE-E-TT--HHHHHHHHHHHHHHHH
T ss_pred             ----hhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHH-HHhCCCHHHHHHHHHHHHHHhC
Confidence                2455666666643   12211000      00 2688887 7889999999999999999864

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.64  E-value=1.3e-13  Score=132.15  Aligned_cols=225  Identities=16%  Similarity=0.104  Sum_probs=157.0

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA  185 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~  185 (480)
                      ..|....+|+.    ++.+=|...  ++.+++|..|+..++.+...              +|+ .|+++...|......+
T Consensus        61 ~nPT~~~lE~~----~a~LEg~~~--~~afsSGmaAI~~~~l~ll~--------------~GD-~vl~~~~~YG~t~~~~  119 (396)
T COG0626          61 GNPTRDALEEA----LAELEGGED--AFAFSSGMAAISTALLALLK--------------AGD-HVLLPDDLYGGTYRLF  119 (396)
T ss_pred             CCccHHHHHHH----HHHhhCCCc--EEEecCcHHHHHHHHHHhcC--------------CCC-EEEecCCccchHHHHH
Confidence            34655666655    666656544  89999999999988877764              556 5666665655555444


Q ss_pred             HHc-CCCCCCeEEeeCCCCCCCCHHHHHHHHHH-HHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccc
Q psy12303        186 AVC-GLGTDNCVEVPSDKRGRLIPSELERLVLE-RKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       186 ~~~-g~~~~~v~~v~~~~~~~~d~~~L~~~i~~-~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                      ... .....++.+++..     +.+++++++.+ +      |++|.+..|+||+..+.||++|+++|+++|+.++||.++
T Consensus       120 ~~~l~~~gi~~~~~d~~-----~~~~~~~~~~~~~------tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTf  188 (396)
T COG0626         120 EKILQKFGVEVTFVDPG-----DDEALEAAIKEPN------TKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTF  188 (396)
T ss_pred             HHHHHhcCeEEEEECCC-----ChHHHHHHhcccC------ceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCc
Confidence            332 1111166666543     55667777764 4      999999999999999999999999999999999999999


Q ss_pred             cccccccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccc
Q psy12303        264 GGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVI  341 (480)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  341 (480)
                      +.+.+.-|. .+       ++|+++-|.-|++++--.  .|.++.+++...+........+                   
T Consensus       189 atP~~q~PL-~~-------GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~-------------------  241 (396)
T COG0626         189 ATPVLQRPL-EL-------GADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRAN-------------------  241 (396)
T ss_pred             ccccccChh-hc-------CCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhh-------------------
Confidence            988764332 33       899999999999997543  3544434444333221000000                   


Q ss_pred             cCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        342 QCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       342 ~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                       .|.......+|+.++.  .+.+.-+.+++.+++..+.+.|++ .|.++-+.
T Consensus       242 -~G~~l~p~dA~l~lRG--lkTL~~Rm~~~~~nA~~IA~~L~~-~p~V~~V~  289 (396)
T COG0626         242 -TGAVLSPFDAWLLLRG--LRTLALRMERHNENALKIAEFLAD-HPKVKKVY  289 (396)
T ss_pred             -cCCCCCHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHhc-CCCeEEEE
Confidence             1222355677887764  677888999999999999999999 89887543

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.64  E-value=1.6e-13  Score=131.60  Aligned_cols=347  Identities=15%  Similarity=0.173  Sum_probs=195.4

Q ss_pred             CCccccccCCCCh-HHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHH
Q psy12303         73 PMFMNQLSCGLDV-VSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARH  151 (480)
Q Consensus        73 p~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~  151 (480)
                      --|.+..+.+.+- ++  .++.++.+. ....|..+|.+..+|+.    ++++||.+.  +++|.+|+.++..+..+...
T Consensus        41 dV~IDLrSDTgT~apS--~~m~aAM~~-GDD~Y~gdpSv~~Lee~----vael~G~E~--alpthqGRgaE~Il~~~~~~  111 (467)
T TIGR02617        41 DVFIDLLTDSGTGAVT--QSMQAAMMR-GDEAYSGSRSYYALAES----VKNIFGYQY--TIPTHQGRGAEQIYIPVLIK  111 (467)
T ss_pred             CeEEECccCCCCCCCC--HHHHHHHHc-CCcccccCchHHHHHHH----HHHHhCCce--EEECCCCchHHHHHHHhhcc
Confidence            3466665555441 21  122222222 44568888888888776    778889986  89999999999999887764


Q ss_pred             hcCchhHhcCCCccCCceEE-------EecCCCchhH-HHHHHHcCCCCCCeEEee----------CCCCCCCCHHHHHH
Q psy12303        152 KMFPTYKEKGLSAIKGQLVM-------FTSDQCHYSV-RSCAAVCGLGTDNCVEVP----------SDKRGRLIPSELER  213 (480)
Q Consensus       152 ~~~~~~~~~g~~~~~g~~~v-------l~~~~~h~s~-~~~~~~~g~~~~~v~~v~----------~~~~~~~d~~~L~~  213 (480)
                      .             ||+ .+       +++...|+-. ...+.+.|.   .++.++          ...+|.+|+++|++
T Consensus       112 ~-------------~g~-e~g~~~~~~~v~hn~~fett~g~a~l~G~---~~~~l~~~ea~~~~~~~~fkG~~dl~~le~  174 (467)
T TIGR02617       112 K-------------REQ-EKGLDRSKMVAFSNYFFDTTQGHSQINGC---TARNVYTKEAFDTGVRYDFKGNFDLEGLER  174 (467)
T ss_pred             c-------------ccc-cccccccccccceEEEEecchHHHHHcCc---eeecccchhhcccccCCCCCCCcCHHHHHH
Confidence            2             222 22       2334455543 345566666   333332          22368999999999


Q ss_pred             HHHHHHHCCCccEEEEeccCCCc-cccc---cChHHHHHHHHHcCcEEEeecccccc-cccccc-----ccCc---cc-C
Q psy12303        214 LVLERKAKGDIPFFVNCTSGTTV-LGAF---DPIEEIADICQKYNMWLHVDAAWGGG-LLLSKK-----YRHP---RL-T  279 (480)
Q Consensus       214 ~i~~~~~~~~~~~~v~~~~~~~~-~G~~---~~l~~I~~i~~~~~~~l~vD~a~~~~-~~~~~~-----~~~~---~~-~  279 (480)
                      +|++....+  +.++..+..+|. -|.+   +++.++.++|++||+.+|.|||--.- +.+...     ...+   .. .
T Consensus       175 ~I~~~g~~~--i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE  252 (467)
T TIGR02617       175 GIEEVGPNN--VPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRE  252 (467)
T ss_pred             HHhhcCCCC--ceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHH
Confidence            998642111  223333333333 3544   55789999999999999999976442 211100     0000   00 1


Q ss_pred             CCCCCccceeCccccCCCcccceEEEEeCc---hhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHH
Q psy12303        280 GIERADSVTWNPHKLMGTLLQCSTIHFKQD---GLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQW  356 (480)
Q Consensus       280 ~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l  356 (480)
                      -.+.+|++++|+.|.+++|.| |++..++.   ++...+......|-    .    ...||..   .||-..+++  ..|
T Consensus       253 ~~~~aDsvt~slsKglgApvG-g~Lag~d~~~~~l~~~~~~~~i~~E----G----f~tYGGl---agrd~ea~a--~Gl  318 (467)
T TIGR02617       253 TYKYADMLAMSAKKDAMVPMG-GLLCFKDDSFFDVYTECRTLCVVQE----G----FPTYGGL---EGGAMERLA--VGL  318 (467)
T ss_pred             hhccCCEEEEEcCCCCCCccc-ceEEecchhHHHHHHHHHhhccccc----C----CcCcCch---hHHHHHHHH--hhh
Confidence            124899999999999999875 56666776   44444332222211    0    0111110   122112222  233


Q ss_pred             HHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEe----ecCccCCCchhhHHHHhhhhhHHHHHHH
Q psy12303        357 RAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWY----LPTRVRNMPHEKRLNILGEITPILKGRM  432 (480)
Q Consensus       357 ~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~----~~~~~~~~~~~~~~~~l~~~~~~i~~~l  432 (480)
                      ...   .-..++++.....+||.+.|.+  .|+.++.  .++.-+|..    .|.- .   ..+    +-  ...+...|
T Consensus       319 ~e~---~~~~yl~~ri~qv~yl~~~L~~--~Gvpi~~--~Gghav~iDa~~~lphi-p---~~~----fp--a~al~~~l  381 (467)
T TIGR02617       319 YDG---MNLDWLAYRINQVQYLVNGLEE--IGVVCQQ--AGGHAAFVDAGKLLPHI-P---ADQ----FP--AHALACEL  381 (467)
T ss_pred             hhc---ccHHHHHHHHHHHHHHHHHHHh--CCCcEEe--cCccEEEEehhhhCCCC-C---hhh----Cc--HHHHHHHH
Confidence            321   2245667778889999999999  7998875  444444431    1211 1   001    10  12233333


Q ss_pred             Hh-cc-------cEEEeeeeeCCc-----ccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        433 MQ-AG-------TMMVGYQPLNDL-----PNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       433 ~~-~g-------~~~~~~~~~~~~-----~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .. .|       .+.....+..+.     -..+|++++-..-|.+++|++++++..+.+
T Consensus       382 y~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~  440 (467)
T TIGR02617       382 YKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE  440 (467)
T ss_pred             HHHcCcceEeecceecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHh
Confidence            22 23       222221111111     257999988888899999999999998765

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.64  E-value=1.6e-13  Score=136.33  Aligned_cols=310  Identities=13%  Similarity=0.072  Sum_probs=173.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcC-------C----------CccCCceEEEec
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKG-------L----------SAIKGQLVMFTS  174 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g-------~----------~~~~g~~~vl~~  174 (480)
                      ++.+.+.+.+++++.-+-..+.|++|||+|+..|++.|+.....  +.++       .          ++.+...+|...
T Consensus       105 ~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~--~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~  182 (464)
T TIGR00699       105 DWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRS--KQRGYQADFSEEENESCMDNQAPGSPDLSILSFK  182 (464)
T ss_pred             HHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHh--cCCCcccccccccccccccccccCCcCCEEEEEC
Confidence            34444444344555422256999999999999999999864210  0000       0          000112355666


Q ss_pred             CCCchhHHHHHHHcCCCC--------CCeEEeeCCC-CCC-------------CCHHHHHHHHHHHHHCCCccEEEEecc
Q psy12303        175 DQCHYSVRSCAAVCGLGT--------DNCVEVPSDK-RGR-------------LIPSELERLVLERKAKGDIPFFVNCTS  232 (480)
Q Consensus       175 ~~~h~s~~~~~~~~g~~~--------~~v~~v~~~~-~~~-------------~d~~~L~~~i~~~~~~~~~~~~v~~~~  232 (480)
                      ...|.....+....+...        ..+..+|... ...             -+++.|++++++   .+..+++|+++.
T Consensus       183 ~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~---~~~~iAAvI~EP  259 (464)
T TIGR00699       183 GAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKK---WHKPVAAIIVEP  259 (464)
T ss_pred             CCcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHh---cCCcEEEEEEeC
Confidence            667877777776654310        1122333221 000             134556666653   223489999999


Q ss_pred             CCCccccccC----hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCC-CCccceeCccccCCCcccceEEEEe
Q psy12303        233 GTTVLGAFDP----IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIE-RADSVTWNPHKLMGTLLQCSTIHFK  307 (480)
Q Consensus       233 ~~~~~G~~~~----l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~-~~D~~~~s~hK~~~~p~~~g~~~~~  307 (480)
                      .....|.+.|    +++|.++|++||+++++|+++.|+......+.. ...|+. .+|++++  .|.+++   .|+++ .
T Consensus       260 v~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~-e~~gv~~~PDi~t~--gK~lg~---gG~~~-~  332 (464)
T TIGR00699       260 IQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAH-EHWNLDDPPDMVTF--SKKFQT---AGYFF-H  332 (464)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHH-HhcCCCCCCCEEEe--hhhhcc---CCccc-c
Confidence            9988899887    999999999999999999999877554433333 334553 5899884  698852   12222 2


Q ss_pred             CchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC--
Q psy12303        308 QDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM--  385 (480)
Q Consensus       308 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~--  385 (480)
                      .. .+.   ...+.+..            +++   .+.+....++.++|+.+-.   .++.++..++.++|.+.|++.  
T Consensus       333 ~~-~~~---~~~~~~~~------------~T~---~gnp~~~aaa~a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~  390 (464)
T TIGR00699       333 DP-AFR---PNKPYRQF------------NTW---MGDPSRALILREIIQEIKR---KDLLENVAHVGDYLYTGLEDLQK  390 (464)
T ss_pred             ch-hcc---CCCCcccc------------cCC---CCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHH
Confidence            21 110   00000000            000   1111222333334444432   234556666666666666551  


Q ss_pred             -CCC-eEEec-CCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCC
Q psy12303        386 -PDK-FYLIL-EPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVT  462 (480)
Q Consensus       386 -~~g-~~~~~-~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t  462 (480)
                       .|. +.-+. ...+.++.+.+. ..       .       ....+.+.+.++|.++...    + .+.+|+. +...+|
T Consensus       391 ~~~~~i~~vRg~G~Glm~gie~~-~~-------~-------~~~~i~~~~~~~Gvl~~~~----g-~~~ir~~-Ppl~it  449 (464)
T TIGR00699       391 KYPEFIQNLRGKGRGTFIAWDTP-DE-------A-------KRDKLLKKARNNGVNIGGC----G-VKAIRLR-PMLVFQ  449 (464)
T ss_pred             hCCCceeeecccCeEEEEEEecC-CH-------H-------HHHHHHHHHHHCCcEEecC----C-CCeEEEe-CCCCCC
Confidence             231 22221 133444444321 00       0       1246778888999554322    3 4789999 999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy12303        463 EGDIDFLLTEMDRL  476 (480)
Q Consensus       463 ~~di~~~~~~l~~~  476 (480)
                      ++||+.++++|++.
T Consensus       450 ~~eid~~~~~l~~~  463 (464)
T TIGR00699       450 KHHADIFLEIISKI  463 (464)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999875

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.63  E-value=2.4e-13  Score=135.65  Aligned_cols=319  Identities=12%  Similarity=0.090  Sum_probs=174.8

Q ss_pred             HHHHHHHHHHHHHhC-CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC-ceEEEecCCCchhHHHHHHHcC
Q psy12303        112 LMETVVLEKMRQIIG-WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG-QLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       112 ~~e~~~~~~la~~~g-~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g-~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      +...++.+.++++.+ -.-..+.|++|||||+..|++.||.........+|... ++ ..+|......|.....+....+
T Consensus        92 ~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~-~~r~kii~~~~~yHG~t~~als~~~  170 (443)
T PRK08297         92 VEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDP-ALGTKVLHLRGAFHGRSGYTLSLTN  170 (443)
T ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCC-CCCceEEEECCCcCCcchhhhhhcC
Confidence            334456666777662 22247999999999999999999864210000122200 11 2255555566777666665544


Q ss_pred             CCCC-----C---eEEeeCCC-C----C-C---C------CHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc----C
Q psy12303        190 LGTD-----N---CVEVPSDK-R----G-R---L------IPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD----P  242 (480)
Q Consensus       190 ~~~~-----~---v~~v~~~~-~----~-~---~------d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~----~  242 (480)
                      ....     .   ...+|... .    . .   .      +++++++.+.+   .+..+++|+++..+...|.+.    -
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~iAavI~EPi~g~~G~~~pp~~y  247 (443)
T PRK08297        171 TDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFER---HPHDIACFIAEPIQGEGGDNHFRPEF  247 (443)
T ss_pred             CcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEccccCCCCCcCCCHHH
Confidence            2100     0   00111100 0    0 0   0      23444555543   234589999999988888873    3


Q ss_pred             hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccc
Q psy12303        243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEY  322 (480)
Q Consensus       243 l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~  322 (480)
                      +++|.++|++||+++++|+++.|+......+.+ ...++ .+|+++  +.|.+.    .|.++++++ ......    ..
T Consensus       248 l~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~-~~~gv-~PDiv~--~gK~l~----~~a~l~~~~-i~~~~~----~~  314 (443)
T PRK08297        248 FAAMRELCDEHDALLIFDEVQTGVGLTGTAWAY-QQLGV-RPDIVA--FGKKTQ----VCGIMAGRR-VDEVED----NV  314 (443)
T ss_pred             HHHHHHHHHHcCCEEEEechhhccCccchHHHH-HhcCC-CCCEEE--eccccc----ccceecchH-HHHhhh----hh
Confidence            899999999999999999999876543333222 23345 689998  468863    344444432 111100    00


Q ss_pred             ccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeE
Q psy12303        323 LFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVN  399 (480)
Q Consensus       323 l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~  399 (480)
                      +....      ...+++   .+.+....++.+++..+..   ++..++..++.++|.+.|++.   .+.+..-....+.+
T Consensus       315 ~~~~~------~~~~T~---~gnpl~~aaa~a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~  382 (443)
T PRK08297        315 FAVSS------RINSTW---GGNLVDMVRARRILEVIEE---DGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLM  382 (443)
T ss_pred             ccCcc------ccCCCC---CccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccceE
Confidence            00000      000111   1111222233333444332   245566677777777766541   23331001233444


Q ss_pred             EEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        400 VSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       400 v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.+.+...        .       ....+.+.+.++|.++...    + .+.+|++ ++..+|++||+++++.|++.+++
T Consensus       383 ~~i~~~~~--------~-------~~~~~~~~l~~~Gvl~~~~----~-~~~lr~~-P~l~~t~~eid~~l~~l~~~l~~  441 (443)
T PRK08297        383 CAFDLPTT--------A-------DRDEVIRRLWEEGVLVLPC----G-ERSIRFR-PALTVTTEEIDAAIDALRRALPE  441 (443)
T ss_pred             EEEEecCH--------H-------HHHHHHHHHHHCCEEEecC----C-CCeEEEE-CCccCCHHHHHHHHHHHHHHHHh
Confidence            44443210        0       1245778888888554321    2 3689998 88999999999999999998765


Q ss_pred             C
Q psy12303        480 L  480 (480)
Q Consensus       480 l  480 (480)
                      +
T Consensus       442 ~  442 (443)
T PRK08297        442 V  442 (443)
T ss_pred             h
Confidence            3

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.62  E-value=6.2e-13  Score=132.61  Aligned_cols=310  Identities=12%  Similarity=0.108  Sum_probs=165.3

Q ss_pred             HHHHHHHHHhCC-CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC-
Q psy12303        116 VVLEKMRQIIGW-QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD-  193 (480)
Q Consensus       116 ~~~~~la~~~g~-~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~-  193 (480)
                      ++.+.++++.+. .-..+.|++|||+|+..|++.||.......+.+|.+...++.+|-.....|.....+....|.... 
T Consensus        89 ~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~  168 (431)
T TIGR03251        89 RFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRK  168 (431)
T ss_pred             HHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCcccc
Confidence            445556666422 124689999999999999999986411000112321100133555666677776666655442100 


Q ss_pred             ----Ce---EEe--e-----CCCCC-C-------CCHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc----ChHHHH
Q psy12303        194 ----NC---VEV--P-----SDKRG-R-------LIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD----PIEEIA  247 (480)
Q Consensus       194 ----~v---~~v--~-----~~~~~-~-------~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~----~l~~I~  247 (480)
                          ..   ..+  |     .+... .       -+++++++.++.   .+..+++|+++..+...|.+.    .+++|.
T Consensus       169 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~iAavivEPv~g~~G~~~~~~~~l~~l~  245 (431)
T TIGR03251       169 TARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAE---RPHDIACFIAEPIQGEGGDNHFRPEFLRAMR  245 (431)
T ss_pred             ccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcCCCHHHHHHHH
Confidence                00   001  1     11000 0       012334444432   234589999999988888874    389999


Q ss_pred             HHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCc--hhhHhhhcCCcccccc
Q psy12303        248 DICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQD--GLLISCNQMSAEYLFM  325 (480)
Q Consensus       248 ~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~--~~~~~~~~~~~~~l~~  325 (480)
                      ++|++||+.+++|++++++......+.. ...++ .+|++++  .|.+  | .+|++ .+++  ........ .....  
T Consensus       246 ~lc~~~g~llI~DEV~tG~GrtG~~~a~-~~~gv-~PDi~~~--gK~~--~-~~g~~-~~~~i~~~~~~~~~-~~~~~--  314 (431)
T TIGR03251       246 ALCDEHDALLIFDEVQTGVGLTGTAWAY-QQLGV-QPDIVAF--GKKT--Q-VCGIM-AGRRVDEVADNVFA-VPSRL--  314 (431)
T ss_pred             HHHHHcCCEEEEecchhccCccchHHHH-HhcCC-CCCEEEe--cccC--c-cceEE-ecchHHHhhhhccc-Ccccc--
Confidence            9999999999999999976554332222 23455 6899985  4664  2 23444 4432  11110000 00000  


Q ss_pred             cccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeEEEE
Q psy12303        326 QDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVNVSF  402 (480)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~v~f  402 (480)
                                .+++   ++.+....++.++|+.+..++   ..++..++.++|.+.|++.   .+++..-......++.+
T Consensus       315 ----------~~T~---~gnpl~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i  378 (431)
T TIGR03251       315 ----------NSTW---GGNLVDMVRATRILEIIEEER---LVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAF  378 (431)
T ss_pred             ----------CCCC---CCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEE
Confidence                      0011   122223334444455443333   3344455555555554430   33232211222333344


Q ss_pred             EeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        403 WYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      .+.+ .       +       ....+.+.+.++|.++...    + .+.+|++ ++..+|++||++++++|+++
T Consensus       379 ~~~~-~-------~-------~~~~~~~~l~~~Gvl~~~~----g-~~~lr~~-P~l~~t~~eid~~l~~l~~~  431 (431)
T TIGR03251       379 DLPS-T-------A-------DRDEVIRQLYREGVLLLGC----G-ERSIRFR-PPLTVTREEIDAAIDAIRRV  431 (431)
T ss_pred             EeCC-H-------H-------HHHHHHHHHHhCCeEEecC----C-CCeEEEE-CCccCCHHHHHHHHHHHHhC
Confidence            3311 0       0       1245778888888554322    2 3679999 99999999999999999763

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.58  E-value=7.9e-13  Score=130.04  Aligned_cols=233  Identities=20%  Similarity=0.231  Sum_probs=169.8

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .+..+..|+.||.+. .-++++|+|.||...+.+...              ||+ .|+++..+|-|+..+..+.|+   .
T Consensus        73 ~eAqe~aA~~fgAd~-tyFvvNGTS~ank~vi~a~~~--------------~GD-~VLvdRN~HKSi~~glilaGa---~  133 (557)
T COG1982          73 KEAQELAARVFGADH-TYFVVNGTSTANKAVINAVLT--------------PGD-KVLVDRNCHKSIHHGLILAGA---T  133 (557)
T ss_pred             HHHHHHHHHHhCCCc-eEEEECCccHHHHHHHHhhcC--------------CCC-EEEecCCccHHHHHHHHHcCC---c
Confidence            456678999999986 467888888999988888765              556 899999999999999888887   3


Q ss_pred             eEEe-eC-CC----CCCCCHHHHHHHHHHHHHCCCcc-EEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccc
Q psy12303        195 CVEV-PS-DK----RGRLIPSELERLVLERKAKGDIP-FFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGL  267 (480)
Q Consensus       195 v~~v-~~-~~----~~~~d~~~L~~~i~~~~~~~~~~-~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~  267 (480)
                      -+++ |. |+    -+.++.+.+++++.+...    . +++++++| |..|.+.++++|.+.+.++++|+.+|++++...
T Consensus       134 Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~~~----~~k~~vitnp-TYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~  208 (557)
T COG1982         134 PVYLEPSRNPLYGIIGGIPLETFKEALLAHPD----AEKLAVITNP-TYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHF  208 (557)
T ss_pred             eEEecCCCCccccccCCCCHHHHHHHHHhChh----hheeEEEecC-ccceEeecHHHHHHHHhhcCceEEhhhcCcccc
Confidence            3444 33 33    257899999998877643    3 78999999 778999999999999999999999999999877


Q ss_pred             cccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCc-----hhhHhhh----cCCcccccccccccCcccCCCC
Q psy12303        268 LLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQD-----GLLISCN----QMSAEYLFMQDKLYDVRYDTGD  338 (480)
Q Consensus       268 ~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~-----~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~  338 (480)
                      -..+....  ..--.++|+++-|.||.+++-..++.+.+++.     +.+..+.    +.+|.|..              
T Consensus       209 ~~~~~l~~--~~~~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea~~~h~STSPsY~l--------------  272 (557)
T COG1982         209 DFSPMLPE--SALNGGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNEALMMHQSTSPSYPL--------------  272 (557)
T ss_pred             cccccCcc--hhhhcCceEEEechhhhhhhhhhhHHHhhCCCccCCHHHHHHHHHHHccCCchHHH--------------
Confidence            66554322  11113789999999999998778888888873     1111111    11111110              


Q ss_pred             ccccCCCCCCchHHHHH-HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc
Q psy12303        339 KVIQCGRHNDIFKLWLQ-WRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE  396 (480)
Q Consensus       339 ~~~~~~r~~~~l~~~~~-l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~  396 (480)
                              ++++.+... +...|..-.++.+++..+.++.+++...+ ++++.++.++.
T Consensus       273 --------~ASlD~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~-~~~~~~~~~~~  322 (557)
T COG1982         273 --------MASLDVARMQEGNAGRELWQEVIDEAIDFRKALRRLINE-IGFFPVLQPEK  322 (557)
T ss_pred             --------HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-cCCeeeccccc
Confidence                    133333211 12235555566688899999999999999 88898887653

>KOG0053|consensus

Probab=99.56  E-value=4.5e-13  Score=126.58  Aligned_cols=218  Identities=18%  Similarity=0.168  Sum_probs=157.1

Q ss_pred             hhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHH-
Q psy12303        108 PVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAA-  186 (480)
Q Consensus       108 ~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~-  186 (480)
                      |....+|.    .++.+-|.+.  ++.+++|..|...++.....              +|+ .|++....|......++ 
T Consensus        77 Pt~~~le~----~iaal~ga~~--~l~fsSGmaA~~~al~~L~~--------------~g~-~iV~~~~~Y~gT~~~l~~  135 (409)
T KOG0053|consen   77 PTRDVLES----GIAALEGAAH--ALLFSSGMAAITVALLHLLP--------------AGD-HIVATGDVYGGTLRILRK  135 (409)
T ss_pred             CchHHHHH----HHHHHhCCce--EEEecccHHHHHHHHHHhcC--------------CCC-cEEEeCCCcccHHHHHHH
Confidence            44444444    4888888876  88889999888888887764              335 55555555555444443 


Q ss_pred             ---HcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccc
Q psy12303        187 ---VCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       187 ---~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                         .+|+   +...+..+     +++.++++++++      +.+|.+..|+||++.+.||++|+++|+++|+.++||.+.
T Consensus       136 ~~~~~gi---e~~~vd~~-----~~~~~~~~i~~~------t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf  201 (409)
T KOG0053|consen  136 FLPKFGG---EGDFVDVD-----DLKKILKAIKEN------TKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTF  201 (409)
T ss_pred             HHHHhCc---eeeeechh-----hHHHHHHhhccC------ceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCc
Confidence               3455   55666655     778888888875      999999999999999999999999999999999999999


Q ss_pred             cccccccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccc
Q psy12303        264 GGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVI  341 (480)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  341 (480)
                      +.+ +..+...+       +||+++.|.-||+++--.  .|.++.+..++........ .+                   
T Consensus       202 ~~p-~~~~pL~l-------GADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~-~~-------------------  253 (409)
T KOG0053|consen  202 GSP-YNQDPLPL-------GADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQ-ED-------------------  253 (409)
T ss_pred             Ccc-cccChhhc-------CCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHH-HH-------------------
Confidence            988 44555555       899999999999997533  4666655455444332111 11                   


Q ss_pred             cCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        342 QCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       342 ~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                       ++...+++.+|..++.  .+.+.-+++++.+++..+.+.|++ .|.++-+
T Consensus       254 -lg~~~~p~~~~ll~Rg--lktl~lRi~~~~ena~~~A~~Le~-~~~v~kv  300 (409)
T KOG0053|consen  254 -LGWCEDPFDLFLLSRG--LKTLHLRINKHSENALKIALLLEA-HPKVKKV  300 (409)
T ss_pred             -hcCCCCHHHHHHHhcC--cchhhhhHHHHHHHHHHHHHHhhh-CCceeEE
Confidence             2222466777777665  455666788888899899999998 7777643

>KOG0633|consensus

Probab=99.56  E-value=1.7e-13  Score=119.24  Aligned_cols=288  Identities=12%  Similarity=0.023  Sum_probs=184.7

Q ss_pred             hCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCC
Q psy12303        125 IGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRG  204 (480)
Q Consensus       125 ~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~  204 (480)
                      -+..++++++..|+.|.+-..+++.+.              ||+..|+.-.+++..+.-.+.+-++   +|+.+|.++++
T Consensus        82 kpLt~dnic~GvGsDE~ID~iiR~~c~--------------PGkeKIl~cPPtysMY~v~A~iNd~---eVvkvpl~pdF  144 (375)
T KOG0633|consen   82 KPLTSDNICVGVGSDELIDLIIRCVCD--------------PGKEKILDCPPTYSMYVVDAAINDA---EVVKVPLNPDF  144 (375)
T ss_pred             CCCCccceEEecCcHHHHHHHHhheec--------------CCccceeecCCcceeEEEEeecCCc---eEEEecCCCCc
Confidence            345567899999999999999888875              7777888888887666555566666   89999999999


Q ss_pred             CCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHc-CcEEEeeccccccccccccccCcccCCCCC
Q psy12303        205 RLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY-NMWLHVDAAWGGGLLLSKKYRHPRLTGIER  283 (480)
Q Consensus       205 ~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~-~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~  283 (480)
                      .++.+++.+.++.+.    .++++++|.|.||+|.+-..+.|.+|.+.- |..++||+||--+.-.  ..+.+++..  .
T Consensus       145 ~lnvdai~evl~~ds----~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~--~S~~~lV~k--Y  216 (375)
T KOG0633|consen  145 SLNVDAIAEVLELDS----KIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGV--ESRMKLVKK--Y  216 (375)
T ss_pred             cccHHHHHHHHhccc----cceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccc--cccchHhHh--C
Confidence            999999999998763    389999999999999998888888887754 7899999999765442  222212222  1


Q ss_pred             Ccc-ceeCccccCCC-cccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcH
Q psy12303        284 ADS-VTWNPHKLMGT-LLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGD  361 (480)
Q Consensus       284 ~D~-~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~  361 (480)
                      ... +.-.++|.+|. +...|.-++ ...+.+......++|....                    ..+..+..++.--..
T Consensus       217 pNLivlqTlSKsfGLAGiRvG~~~~-~~~ia~iln~~KaPYNiS~--------------------~~s~~AL~Als~~n~  275 (375)
T KOG0633|consen  217 PNLIVLQTLSKSFGLAGIRVGYGAF-PLSIAEILNRAKAPYNISV--------------------AGSVAALAALSDSNG  275 (375)
T ss_pred             CceeehhhhhhhcCcceeEeecccc-cHHHHHHHHhccCCccccc--------------------hhHHHHHHhcCcccc
Confidence            222 33356777764 234555443 3344445555566665332                    112222333322234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe-cCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHH-HHHHHhcccEE
Q psy12303        362 EGFEKQIDRLMELAEYMVKKIKSMPDKFYLI-LEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPIL-KGRMMQAGTMM  439 (480)
Q Consensus       362 ~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~-~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i-~~~l~~~g~~~  439 (480)
                      +.++...+...+-+.+|...|.+ .|++.-+ +....+.+..+..... .+         +   .+.+ ++.+...|.++
T Consensus       276 kkme~~rdaiv~er~RL~keLt~-v~~~~~~~gg~daNFiLi~v~~~~-n~---------~---akkly~q~at~~gVvV  341 (375)
T KOG0633|consen  276 KKMEDVRDAIVRERERLFKELTE-VPFLNDYPGGSDANFILIEVTGGD-NG---------M---AKKLYKQDATKMGVVV  341 (375)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhc-CccccCCCCcccccEEEEEEcCCC-cH---------H---HHHHHHHHHHhcceEE
Confidence            55666667777778888899998 8877532 3344444444433221 11         1   2333 44455666444


Q ss_pred             EeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        440 VGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       440 ~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      .-.+...+-.+++|+++.    |+|+=+.+++.+++.
T Consensus       342 Rfrgse~~c~G~lRitvG----t~EentvL~k~~K~~  374 (375)
T KOG0633|consen  342 RFRGSEEGCKGYLRITVG----TPEENTVLMKCLKQF  374 (375)
T ss_pred             EEcCCccccceeEEEEcC----CcccchHHHHHHHhh
Confidence            434333333689999954    456666778877764

>KOG0258|consensus

Probab=99.56  E-value=8e-12  Score=115.09  Aligned_cols=327  Identities=13%  Similarity=0.040  Sum_probs=196.0

Q ss_pred             cCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEec
Q psy12303         97 ANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTS  174 (480)
Q Consensus        97 ~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~  174 (480)
                      ...+.+.|+.|.+..-+.+.+++.+.+.=|.  ++.++++|+|+|.|+.+.|......             + ..-|+++
T Consensus       102 ~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~-------------~-~~GvliP  167 (475)
T KOG0258|consen  102 CGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAG-------------K-KTGVLIP  167 (475)
T ss_pred             cCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcC-------------C-CCceEee
Confidence            3346788889999999999999999888785  3578999999999999999888753             2 2368888


Q ss_pred             CCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccc---cChHHHHHHHH
Q psy12303        175 DQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAF---DPIEEIADICQ  251 (480)
Q Consensus       175 ~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~---~~l~~I~~i~~  251 (480)
                      -+.|+-+...+..+|..... .+..-..+|.+|.++|++.+++.+ ++..|+++++.+|-||||.+   ..+++|..+|+
T Consensus       168 iPQYPLYsAti~l~~~~~v~-YyLdEe~~W~ld~~el~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~  245 (475)
T KOG0258|consen  168 IPQYPLYSATISLLGGTQVP-YYLDEESNWSLDVAELERSVDEAR-KGINPRALVVINPGNPTGQVLSEENIEGIICFAA  245 (475)
T ss_pred             cCCCchhHHHHHHhCCcccc-eeeccccCCCCCHHHHHHHHHHHh-ccCCceEEEEECCCCccchhhcHHHHHHHHHHHH
Confidence            88898887788888763211 233444579999999999999988 78888888888888999988   56999999999


Q ss_pred             HcCcEEEeeccccccccccc-cc---cCcc--cC-CC-CCCcccee-CccccCCC--cccceEEEEeCc--hhhHh----
Q psy12303        252 KYNMWLHVDAAWGGGLLLSK-KY---RHPR--LT-GI-ERADSVTW-NPHKLMGT--LLQCSTIHFKQD--GLLIS----  314 (480)
Q Consensus       252 ~~~~~l~vD~a~~~~~~~~~-~~---~~~~--~~-~~-~~~D~~~~-s~hK~~~~--p~~~g~~~~~~~--~~~~~----  314 (480)
                      ++++.++.|++|---.+.-. .+   +--+  +. -. ..+-.+++ |.||...+  +...|.+=+-+.  +....    
T Consensus       246 ~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl  325 (475)
T KOG0258|consen  246 EEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKL  325 (475)
T ss_pred             HcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHH
Confidence            99999999998876554221 00   0000  00 00 12223333 44555543  223343322222  11111    


Q ss_pred             hhcCCcccccccccc--cCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        315 CNQMSAEYLFMQDKL--YDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       315 ~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      ......+-..++-..  .-..+-+++         .+...+..       .-+.+.......++.+.+.+++ ++|+.. 
T Consensus       326 ~si~lc~~V~GQ~~vdl~VnPP~Pgd---------~Sy~~~~~-------Ekd~il~~l~~ra~l~~~~~ns-~~gi~c-  387 (475)
T KOG0258|consen  326 ASIKLCPQVSGQKLVDLVVNPPKPGD---------PSYDLFSS-------EKDGILSSLRSRAKLTEDAFNS-LEGISC-  387 (475)
T ss_pred             HhhhhcCCccchhhhceecCCCCCCC---------cchhhhhh-------hhHhHHHHHHHHhHHHHHHHhh-cCceee-
Confidence            000001111110000  000001111         12222222       2244556777888899999999 999998 


Q ss_pred             cCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHH--HHHHhcccEEEeeeeeCCc--ccEEEEecccCC
Q psy12303        393 LEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILK--GRMMQAGTMMVGYQPLNDL--PNFFRNIISSAA  460 (480)
Q Consensus       393 ~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~--~~l~~~g~~~~~~~~~~~~--~~~~R~~~~~~~  460 (480)
                      .++++.++.|.-+.-..+..   +..+.+....+.++  +.|...|++.|+.+++..+  ...+|.+|....
T Consensus       388 n~~qGAMY~fP~i~lP~kai---e~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp~~  456 (475)
T KOG0258|consen  388 NPVQGAMYLFPQISLPPKAI---EAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILPPG  456 (475)
T ss_pred             ccCccceeecccccCCHHHH---HHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecCch
Confidence            68999999884332111100   11112221223332  3455566555544443322  457999976554

>KOG3846|consensus

Probab=99.53  E-value=1.2e-12  Score=116.55  Aligned_cols=319  Identities=15%  Similarity=0.165  Sum_probs=215.5

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEec----CCCchhHHHHHHHcC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTS----DQCHYSVRSCAAVCG  189 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~----~~~h~s~~~~~~~~g  189 (480)
                      .+-+...++.++|+.+.++.+.++-|. |+..++...-+  |.-+         +..|+.-    ...||.++..+++.|
T Consensus       113 De~il~l~~~iVGA~e~EvavmNsLTv-Nlh~Ll~sFyK--PTek---------R~KILlE~kaFPSDhYAiesQ~~lhG  180 (465)
T KOG3846|consen  113 DEPILPLLAPIVGAQENEVAVMNSLTV-NLHSLLISFYK--PTEK---------RFKILLEKKAFPSDHYAIESQCKLHG  180 (465)
T ss_pred             chhhhhhhhhhccCCchhhhhHhhhhh-HHHHHHHHhcC--Ccch---------hhhhhhccCCCCchHHHHHhhhhhcC
Confidence            345678899999998877777776654 54444433221  1111         2234433    236888999999999


Q ss_pred             CCCC-CeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccc
Q psy12303        190 LGTD-NCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGL  267 (480)
Q Consensus       190 ~~~~-~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~  267 (480)
                      +... .++.+...+ +-.+..+++-+.|+.+   |...++|+++..+..||...++.+|...-+..|+++-.|-||+.+-
T Consensus       181 ~~~e~sm~~iePREGEetlRteDILd~IEkn---gDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgN  257 (465)
T KOG3846|consen  181 ISPENSMIQIEPREGEETLRTEDILDTIEKN---GDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGN  257 (465)
T ss_pred             CChHHheEEecccccccchhHHHHHHHHHhc---CCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcC
Confidence            8643 344454433 3467788888887765   5558999999999999999999999988888899999999999999


Q ss_pred             cccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccc---cC--cccCCCCccc
Q psy12303        268 LLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKL---YD--VRYDTGDKVI  341 (480)
Q Consensus       268 ~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~~~~~~~~~~  341 (480)
                      .+.....|       ++|+.|+..+|+++++ .|.|.+++.++.. ........+|..+....   .+  ....+|..++
T Consensus       258 VpL~LHdW-------gVDFACWCSYKYlnaGaGgIgGlFvHekh~-~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~Gf  329 (465)
T KOG3846|consen  258 VPLQLHDW-------GVDFACWCSYKYLNAGAGGIGGLFVHEKHT-KESLPRLAGWWGHDPSKRFQMDNVLELIPGALGF  329 (465)
T ss_pred             CceEEeec-------CCceEEEeeecccccCCCccceeeeehhhh-cchhhHHhhhccCCcchhhhhccccccCcccccc
Confidence            98888888       9999999999999865 5678888776532 22222234444332111   01  1223333333


Q ss_pred             cCCCCC--CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeE-----------EecCC----ceeEEEEEe
Q psy12303        342 QCGRHN--DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFY-----------LILEP----EMVNVSFWY  404 (480)
Q Consensus       342 ~~~r~~--~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~-----------~~~~~----~~~~v~f~~  404 (480)
                      ..+.+.  ...++..+|+.+.+..+.++.++..-+..||...++. ..|..           ++.+.    .+......|
T Consensus       330 RiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~-~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~F  408 (465)
T KOG3846|consen  330 RISNPPIIDVVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKA-SKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYF  408 (465)
T ss_pred             ccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHHHHH-hcccCchhhhcceeEEEeCCcccccccceEEEEe
Confidence            333332  4556677788787888899999999999999888876 44432           22111    111222211


Q ss_pred             ecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        405 LPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       405 ~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .                 .-+..+++.|.++|.+. ..   .. ++.+|+.-.+.++|-.||..++++|.+++.
T Consensus       409 s-----------------sp~~~vfqeL~krGv~~-Dk---R~-PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d  460 (465)
T KOG3846|consen  409 S-----------------SPTPKVFQELHKRGVIG-DK---RR-PNVIRVAPVPLYNTFSDVYIFVNALNEAMD  460 (465)
T ss_pred             C-----------------CCchHHHHHHHHcCeec-cc---cC-CCceEeecchhhccHHHHHHHHHHHHHHHH
Confidence            1                 11357889999999432 21   12 789999967889999999999999998764

>KOG1401|consensus

Probab=99.52  E-value=1.2e-11  Score=115.06  Aligned_cols=229  Identities=16%  Similarity=0.108  Sum_probs=147.9

Q ss_pred             HHHHHHhCC-CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCC-----
Q psy12303        119 EKMRQIIGW-QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGT-----  192 (480)
Q Consensus       119 ~~la~~~g~-~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~-----  192 (480)
                      +.+.+.++- ....+.|+++||+||+.||+.||.....+....     . -..|......|.-...++...+...     
T Consensus       105 ~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~-----~-t~~Iaf~nsyHG~tlgals~~~~s~y~~~~  178 (433)
T KOG1401|consen  105 EVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEK-----K-TKFIAFENSYHGRTLGALSVTGNSKYGLPF  178 (433)
T ss_pred             HHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCcc-----c-eeEEEEecCcCCcchhHHHhhcccccCCCC
Confidence            334444432 235699999999999999999997532211000     0 1156666777877666666443211     


Q ss_pred             ----CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEEEeecccc
Q psy12303        193 ----DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWLHVDAAWG  264 (480)
Q Consensus       193 ----~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l~vD~a~~  264 (480)
                          ..++..+.+     |+.+|++.++..+..   +.+|++...+..-|.+..    +..|..+|+++|+.+|.|+++.
T Consensus       179 ~p~~p~v~~~~yn-----d~t~l~k~~~~h~~~---IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~t  250 (433)
T KOG1401|consen  179 DPIAPDVVTAEYN-----DSTALEKLFESHKGE---IAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQT  250 (433)
T ss_pred             CCCCCceeecccC-----CHHHHHHHHHhCCCc---eEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhh
Confidence                122233333     789999999876422   789999999887777633    7899999999999999999999


Q ss_pred             ccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCC
Q psy12303        265 GGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCG  344 (480)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  344 (480)
                      |.....+.+.+ .+.++ ..|+.|  .-|.++++.+.|+..+++. ..+......+  +.+..                +
T Consensus       251 G~gR~g~~~a~-e~~~~-~PDI~t--~aK~L~gGlPigA~~v~~k-V~~~i~~~~~--l~hg~----------------T  307 (433)
T KOG1401|consen  251 GLGRLGYGWAQ-EYFGV-TPDITT--VAKPLGGGLPIGATGVRDK-VAEMISPGDH--LYHGG----------------T  307 (433)
T ss_pred             CccccchHHHH-HHhCc-CCccee--ehhhccCCceeEEEeehHH-HHhhcCCCCc--cccCc----------------c
Confidence            98777776666 55555 789998  6699999899999998764 3333222222  21110                1


Q ss_pred             CCCCchHH---HHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhc
Q psy12303        345 RHNDIFKL---WLQWRAKG-DEGFEKQIDRLMELAEYMVKKIKS  384 (480)
Q Consensus       345 r~~~~l~~---~~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~  384 (480)
                      -..++++.   ..++..+. .+.+.+.-+....+++.+.+.+.+
T Consensus       308 f~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~  351 (433)
T KOG1401|consen  308 FSGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDEYLKK  351 (433)
T ss_pred             cCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            11233333   33444443 344555555666677777777777

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.51  E-value=3.6e-12  Score=127.12  Aligned_cols=302  Identities=14%  Similarity=0.074  Sum_probs=158.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEec--CCCchh--HHHHHHH
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTS--DQCHYS--VRSCAAV  187 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~--~~~h~s--~~~~~~~  187 (480)
                      ..+.++.+.+++++... ..+.|+++||+|+..|++.||..       .|      +..|+..  ...|..  +......
T Consensus        88 ~~~~~la~~l~~~~p~~-~~v~f~~sGseA~e~AlklAr~~-------tg------r~~i~~~~~~~~h~~~~~~~g~~~  153 (431)
T PRK06209         88 AIELDAAESFLELIDGA-DMVKFCKNGSDATSAAVRLARAY-------TG------RDLVARCADHPFFSTDDWFIGTTP  153 (431)
T ss_pred             HHHHHHHHHHHHhCCcc-ceEEEecCHHHHHHHHHHHHHHH-------hC------CCeEEEeccCccccccccccccCC
Confidence            44556778888887421 46999999999999999999875       22      3244443  112210  0000000


Q ss_pred             c--CCCC---CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecc
Q psy12303        188 C--GLGT---DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAA  262 (480)
Q Consensus       188 ~--g~~~---~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a  262 (480)
                      .  |...   ..+..++.+     |+++|++++++.   +..+++|++.......+....+++|.++|++||+++++|++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~---~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv  225 (431)
T PRK06209        154 MSAGIPASVSALTVTFRYN-----DIASLEALFEDH---PGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEM  225 (431)
T ss_pred             CCCCCChhHhccccccCCC-----CHHHHHHHHHhC---CCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcc
Confidence            0  1100   011122222     789999988642   23477888877655434444599999999999999999999


Q ss_pred             ccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhh-h-cC-Cc-ccccccccccCcccCCCC
Q psy12303        263 WGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISC-N-QM-SA-EYLFMQDKLYDVRYDTGD  338 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~-~-~~-~~-~~l~~~~~~~~~~~~~~~  338 (480)
                      +.+..... .... ...++ .+|+++  +.|.++++++.|.+..++ ++.... . .. .+ .++...            
T Consensus       226 ~tG~~~~~-~g~~-~~~gv-~PDi~t--~gK~lggG~p~~av~~~~-~i~~~~~~~~~~~~~~~~~~~------------  287 (431)
T PRK06209        226 ITGFRWHM-RGAQ-KLYGI-VPDLSC--FGKALGNGFAVSALAGKR-EYMELGGLEHTDRERVFLLST------------  287 (431)
T ss_pred             cccCCcCc-chhh-HHhCC-Ccceee--ehhhhcCCcccEEEEEHH-HHHhhhcccccCCCCceeecc------------
Confidence            97654321 1001 12344 578877  579999877788887653 333321 0 00 00 111110            


Q ss_pred             ccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEecCCceeEEEEEeecCccCCCchh
Q psy12303        339 KVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP---DKFYLILEPEMVNVSFWYLPTRVRNMPHE  415 (480)
Q Consensus       339 ~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~---~g~~~~~~~~~~~v~f~~~~~~~~~~~~~  415 (480)
                       ++ .+.+....++.++++.+..++   ..++..++.++|.+.|++ .   .++..........+.+.+......+... 
T Consensus       288 -T~-~~np~~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~-~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~-  360 (431)
T PRK06209        288 -TH-GAETHALAAAIATMAIYRDED---VIERLHEQGAKLAAGVNE-AAAEHGLQDHVRVSGRPCCLTYSTLDGNGQPS-  360 (431)
T ss_pred             -CC-CCCHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHH-HHHhCCCCeEEEeecceEEEEEecCCcccCCc-
Confidence             00 111122334444555543332   345555555566555543 1   1222100101111222111111000000 


Q ss_pred             hHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       416 ~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                         ..+   ...+.+.+.+.|.++ .         .++   ++..+|++||+++++++++.+++
T Consensus       361 ---~~~---~~~~~~~l~~~Gi~~-p---------~l~---is~~ht~~dId~~l~~l~~~l~~  405 (431)
T PRK06209        361 ---QAF---RTLFLQETIRRGVLM-P---------SLV---VSYAHGDADIERTIDAVHGALGV  405 (431)
T ss_pred             ---HHH---HHHHHHHHHHCCccc-c---------ccc---ccccCCHHHHHHHHHHHHHHHHH
Confidence               111   235667888888543 1         133   34678999999999999987653

>KOG1358|consensus

Probab=99.51  E-value=2.1e-12  Score=118.94  Aligned_cols=308  Identities=15%  Similarity=0.149  Sum_probs=199.2

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      .++|..    +++++|++.  .++.+-|-.++..++.+...+              || +|++.+..+..+.++.+...-
T Consensus       142 ldlE~~----iakF~G~E~--aivYs~gF~ti~S~ipafsKr--------------GD-Ii~~de~~nfaIq~GlqlSRS  200 (467)
T KOG1358|consen  142 LDLEKR----IAKFMGTED--AIVYSYGFSTIESAIPAFSKR--------------GD-IIFVDEAVNFAIQKGLQLSRS  200 (467)
T ss_pred             cccHHH----HHHhhCCcc--eeeeccccchhhhcchhhhcc--------------Cc-EEEEehhhhHHHHHHHhhhhh
Confidence            445554    999999976  566666666777778777653              35 899999999999999888765


Q ss_pred             CCCCeEEeeCCCCCCCCHHHHHHHHHHHH----HCCC---ccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccc
Q psy12303        191 GTDNCVEVPSDKRGRLIPSELERLVLERK----AKGD---IPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       191 ~~~~v~~v~~~~~~~~d~~~L~~~i~~~~----~~~~---~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                         .+.+...+     |.++|+..+.+..    ++.+   .-++|++....-++|.+.|+.+|.++..+|...+++|+.+
T Consensus       201 ---~i~~Fkhn-----dm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~  272 (467)
T KOG1358|consen  201 ---TISYFKHN-----DMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESL  272 (467)
T ss_pred             ---eeEEecCC-----CHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEeccc
Confidence               66777665     7888877664332    2222   1367899999999999999999999999999999999999


Q ss_pred             ccccccccc---ccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcc
Q psy12303        264 GGGLLLSKK---YRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKV  340 (480)
Q Consensus       264 ~~~~~~~~~---~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  340 (480)
                      +.|.+....   ..+ .--+++.+|.++.+..-.++.   .|++++.+......-.-....|.+.               
T Consensus       273 SfG~lg~~GrGvteH-~~v~~~~iDiv~~sm~~alas---~GgFc~G~~~i~~hQrLSg~~Y~fS---------------  333 (467)
T KOG1358|consen  273 SFGVLGKTGRGVTEH-FGVPITDIDIVTASMETALAS---GGGFCAGKSFIADHQRLSGSGYCFS---------------  333 (467)
T ss_pred             ccccccccCcccccc-CCCCccceeeeeecccccccc---cCceeecceeeEeeeeccccceeee---------------
Confidence            988763211   111 112245789999887766654   4455555432221111112233322               


Q ss_pred             ccCCCCCCchHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHH
Q psy12303        341 IQCGRHNDIFKLWLQWRAKG-DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLN  419 (480)
Q Consensus       341 ~~~~r~~~~l~~~~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~  419 (480)
                          +...+.-+-++.+.+- .+.-.++.+..+..+..+.+.|.. ..++.+.+.+.+.++-..+.+....-   ++...
T Consensus       334 ----AslPp~la~aa~~ai~i~~~~p~~~~~L~~k~~~~H~~l~~-~s~~~v~~~~~SPi~hl~l~~~~~s~---e~e~~  405 (467)
T KOG1358|consen  334 ----ASLPPYLAGAAIKAILIEEWNPEIVQPLRAKVAKFHAALSS-NSGFIVSGSPESPIIHLQLERSYGSR---EKEEK  405 (467)
T ss_pred             ----ccCchhhhhhHHHHHHHHhhCcchhhhhhccccccchhhhc-CCceEEecCcCCceeeeeecccccch---HHHHH
Confidence                1111111222222211 223344666777788888899988 78899988888888877665433211   11112


Q ss_pred             HhhhhhHHHHHHHHhcccEEEeeeeeC-----CcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        420 ILGEITPILKGRMMQAGTMMVGYQPLN-----DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       420 ~l~~~~~~i~~~l~~~g~~~~~~~~~~-----~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .    .+++..+.+.++..++.-....     ..+..+|+| ++..+++++|+++++.|++....
T Consensus       406 l----L~eivd~~i~~~~ll~~a~~~~~~e~~~~~pSiri~-~~a~~seeel~ra~~~ik~~~~~  465 (467)
T KOG1358|consen  406 L----LEEIVDKCIAEGVLLTRAKYLEKLERCPIPPSIRIC-VSAGMSEEELERAAELIKEVASA  465 (467)
T ss_pred             H----HHHHHHHHHhhcceehhhhhhhhcccCCCCCcEEEE-EeCCCCHHHHHHHHHHHHHHHHh
Confidence            2    2466777777765443321111     114589999 89999999999999999987643

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.48  E-value=5.5e-11  Score=125.30  Aligned_cols=329  Identities=12%  Similarity=-0.015  Sum_probs=183.2

Q ss_pred             HHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCc---------cCCce-EEEecCCCchh
Q psy12303        112 LMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSA---------IKGQL-VMFTSDQCHYS  180 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~---------~~g~~-~vl~~~~~h~s  180 (480)
                      +...++.+.|.+..+-+ -..++|+++||+|+..||++|+...   ....|...         .+++. .|-.....|..
T Consensus       409 epa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y---~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~  485 (817)
T PLN02974        409 EPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKF---IVDHGFLENSGNEKRGGDLIELKVLALDGSYHGD  485 (817)
T ss_pred             HHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHH---HHhcCCCcccccccccccCCCCEEEEECCCcCCC
Confidence            33345666666654322 2469999999999999999996522   11123210         01232 44455566777


Q ss_pred             HHHHHHHcCCC--------CC---CeEEeeCC--------------CCCC----------------CC------------
Q psy12303        181 VRSCAAVCGLG--------TD---NCVEVPSD--------------KRGR----------------LI------------  207 (480)
Q Consensus       181 ~~~~~~~~g~~--------~~---~v~~v~~~--------------~~~~----------------~d------------  207 (480)
                      ...++...|..        ..   ...+++..              ..++                .|            
T Consensus       486 T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~  565 (817)
T PLN02974        486 TLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAY  565 (817)
T ss_pred             CHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccccccccccccccccccccchhhhHHH
Confidence            77777665421        00   01111100              0000                00            


Q ss_pred             HHHHHHHHHHHH--HCCCccEEEEeccC-CCccccccC----hHHHHHHHHHcCcEEEeeccccccccccccccCcccCC
Q psy12303        208 PSELERLVLERK--AKGDIPFFVNCTSG-TTVLGAFDP----IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTG  280 (480)
Q Consensus       208 ~~~L~~~i~~~~--~~~~~~~~v~~~~~-~~~~G~~~~----l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~  280 (480)
                      .+.+++.|++..  ..+.++++|+++.. +...|.+.|    +++|.++|++||+++|+|+++.|+......+.. ...|
T Consensus       566 ~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~-e~~g  644 (817)
T PLN02974        566 RSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAW-ELLG  644 (817)
T ss_pred             HHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhH-HhcC
Confidence            144556664321  12355888998884 566687754    899999999999999999999999776665555 5556


Q ss_pred             CCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCC-cccccccccccCcccCCCCccccCCCCCCchHHHHHHHH
Q psy12303        281 IERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMS-AEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA  358 (480)
Q Consensus       281 ~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~  358 (480)
                      + ..|+++  ..|.++++ .+.|+++++++ +.+...... ...+.+.          .++   .+.+....++.++|+.
T Consensus       645 v-~PDIi~--~gKgLtgG~~Plaa~l~~~~-I~~~f~~~~~~~~~~hg----------~Ty---~gnpl~cAaala~L~~  707 (817)
T PLN02974        645 C-KPDIAC--YAKLLTGGLVPLAATLATEE-VFEAFRGPSKLDALLHG----------HSY---TAHPMGCAAAAKALQW  707 (817)
T ss_pred             C-CCCEEe--ecccccCCCCccEEEEEcHH-HHHhhccccccCCcccC----------CCC---CcCHHHHHHHHHHHHH
Confidence            6 699999  55999988 48999887643 333221100 0011110          000   1112233333344444


Q ss_pred             hcHH-HHHHHHHHHHHHHHHHHHHH----hcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH
Q psy12303        359 KGDE-GFEKQIDRLMELAEYMVKKI----KSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM  433 (480)
Q Consensus       359 ~g~~-~~~~~~~~~~~l~~~l~~~l----~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~  433 (480)
                      +-.+ -++...++..++.+++.+.|    .+ +|.+.=+ .-.+.++.+.+...... .   .+.   ......+.+++.
T Consensus       708 ~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~-~p~V~~V-Rg~Gl~~~iel~~~~~~-~---~~~---~~~a~~v~~~~~  778 (817)
T PLN02974        708 YKDPSTNPNLIPPGSRLRELWDEELVRAISS-LPNVERV-VSLGTVLALELDAEGSG-S---GYS---SLYARSVVRRLR  778 (817)
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCeeEE-EeeeeEEEEEEecCCcc-c---ccc---hHHHHHHHHHHH
Confidence            4332 22344455555555555544    44 4443222 12233344444322100 0   000   012356777788


Q ss_pred             -hcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        434 -QAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       434 -~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                       +.|.++...      .+.+|+. +.+.+++++++++++.|.+.+
T Consensus       779 ~~~Gl~~r~~------Gnvi~l~-pP~~i~~e~l~~~~~~l~~~~  816 (817)
T PLN02974        779 REDGIYARPL------GNVVYLM-CGPTTSPETCTRLLRKVYRRL  816 (817)
T ss_pred             HhCCEEEEec------CCEEEEe-CCCCCCHHHHHHHHHHHHHHh
Confidence             788554322      3689988 899999999999999998764

>KOG0630|consensus

Probab=99.44  E-value=6.1e-12  Score=118.80  Aligned_cols=260  Identities=17%  Similarity=0.189  Sum_probs=178.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEEC-------CChhHHHHHHHHHHHHhcCch--hHhcCCC-ccCCceEEEecCCCchh-
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILA-------PGGSISNLYAFLAARHKMFPT--YKEKGLS-AIKGQLVMFTSDQCHYS-  180 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t-------~ggt~a~~~al~~~~~~~~~~--~~~~g~~-~~~g~~~vl~~~~~h~s-  180 (480)
                      .+.-.+..|+..+|.+...+++..       ..-..|+..+++.+....++.  ..+.|+. ...+.+++|+|+..|.- 
T Consensus       165 ~i~Gdanh~fgnLF~FAdsqiycsdPaasfhadiadai~haVkLAikar~~~dhs~eG~~afaa~aaPt~YiS~alh~~l  244 (838)
T KOG0630|consen  165 SISGDANHVFGNLFHFADSQIYCSDPAASFHADIADAIGHAVKLAIKARCGGDHSLEGGIAFAALAAPTFYISEALHMDL  244 (838)
T ss_pred             hhccchHHHHHHHHhhcccccccCCchhhhhhhhhhHHHHHHHhhhhhccCCccccccccchHhhcCceEEEcccccHHH
Confidence            344456788999998855343332       222345555555555443332  2222322 01124499999999986 


Q ss_pred             HHHHHHHcCCCCCCeEEeeCCC----CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcC-c
Q psy12303        181 VRSCAAVCGLGTDNCVEVPSDK----RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYN-M  255 (480)
Q Consensus       181 ~~~~~~~~g~~~~~v~~v~~~~----~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~-~  255 (480)
                      ...+|+.+|+....+..++-.+    .|+||.-.+++.|+++..+|++|.+++...|++.+|..|.+-+|.++|++|+ +
T Consensus       245 ~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~GqnDmi~kildi~eahakf  324 (838)
T KOG0630|consen  245 LHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQNDMILKILDICEAHAKF  324 (838)
T ss_pred             HHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchHHHHHHHHHHHHhhhe
Confidence            4578888998654444444322    3699999999999999999999999999999999999999999999999997 9


Q ss_pred             EEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccC
Q psy12303        256 WLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYD  335 (480)
Q Consensus       256 ~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  335 (480)
                      |+|.-| |+..++.+-+-..-+..-.+..||++.+..-|++.|-.--+++ ..+ +...    ....+ ..+        
T Consensus       325 WLHasG-haiAALt~aepnnil~HV~eqldSMal~ialWLGiPSaPiV~L-HRP-leg~----aaSaf-esd--------  388 (838)
T KOG0630|consen  325 WLHASG-HAIAALTCAEPNNILGHVEEQLDSMALNIALWLGIPSAPIVLL-HRP-LEGS----AASAF-ESD--------  388 (838)
T ss_pred             eEeecc-chhhheeecCcccchhHHHHHHhhccchhHHHhCCCCCceEEe-ecc-cccc----cchhc-ccC--------
Confidence            999987 3333333322111011223468999999999999875333333 222 1110    01111 111        


Q ss_pred             CCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        336 TGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       336 ~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                           .-..++.+++.+|.+++.+|...+.++++....+.+.|.+.+.+ ++++++++
T Consensus       389 -----pi~rekLdaLp~Wta~q~LggKaIadmienAFll~kilfe~aSa-~~eiemig  440 (838)
T KOG0630|consen  389 -----PILREKLDALPLWTALQALGGKAIADMIENAFLLCKILFEGASA-CEEIEMIG  440 (838)
T ss_pred             -----hHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhc-CCceeEec
Confidence                 11456678999999999999999999999999999999999999 99999885

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.39  E-value=4e-11  Score=115.81  Aligned_cols=182  Identities=20%  Similarity=0.156  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      +....++.+.+.++++-....+.|++|||+|+..|++.++... ......+.     ..++......|.....+....+-
T Consensus        58 ~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~~~~-~~~~~~~r-----~~il~~~~~yHG~t~~~~s~~~~  131 (339)
T PF00202_consen   58 HPEAAELAEKLAELFPGGLDRVFFANSGSEAVEAALKLARQYH-NKRAYTGR-----RKILAFEGSYHGRTLGALSLTGN  131 (339)
T ss_dssp             EHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHH-HHTHHHTT-----TEEEEETTTB-TSSHHHHHHSSS
T ss_pred             ccchhhhhhhhhhccccccceeeeccCchHHHHHHHHHhhccc-ccccccCC-----ceEEEeeeeeeccCcccccccCC
Confidence            3445567888888884444569999999999999999999210 00011221     22444555667665555554321


Q ss_pred             ---------CCCCeEEeeCCCCCCCCHHH----------HHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHH
Q psy12303        191 ---------GTDNCVEVPSDKRGRLIPSE----------LERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIA  247 (480)
Q Consensus       191 ---------~~~~v~~v~~~~~~~~d~~~----------L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~  247 (480)
                               ....+..+|.+     ++..          +++.+.+..  ...+++|+++..+...|.+.+    +++|.
T Consensus       132 ~~~~~~~~~~~~~~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~iaavivEPi~g~~G~~~~~~~~l~~l~  204 (339)
T PF00202_consen  132 PPYRKGFGPLYPGVVFVPFP-----DPAADEEEQACLNALEELIAALN--ADEIAAVIVEPIQGEGGMIPPPPEYLRELR  204 (339)
T ss_dssp             THHHTTTCSSSTTEEEEETT-----CHHHHHHHHHHHHHHHHHHHHHH--GGGEEEEEEESSBTTTTSBEE-TTHHHHHH
T ss_pred             ccccccccccccccccccCC-----ccchhhhHHHHHHHHHHHHHhhc--CCcEEEEEEeccccccCccccccchhhehc
Confidence                     11355677776     3333          444444332  234789999999888887643    79999


Q ss_pred             HHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCc
Q psy12303        248 DICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQD  309 (480)
Q Consensus       248 ~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~  309 (480)
                      ++|++||+++++|+++.++......+.. ...++ .+|+++++  |.++++.+.|.++++++
T Consensus       205 ~lc~~~gillI~DEV~tG~gRtG~~~a~-~~~gv-~PDiv~~g--K~l~gG~p~sav~~~~~  262 (339)
T PF00202_consen  205 ELCREHGILLIADEVQTGFGRTGKFFAS-EHYGV-DPDIVTFG--KGLGGGLPISAVLGSEE  262 (339)
T ss_dssp             HHHHHTT-EEEEEETTTTTTTTSSSSGH-HHHTS-SSSEEEEE--GGGGTTSSEEEEEEEHH
T ss_pred             ccccccccceecccccccccccCCccce-ecccc-cCcccccc--cchhhhhhcccccccch
Confidence            9999999999999999998665544433 44555 68999965  99988899999997754

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>KOG2467|consensus

Probab=99.35  E-value=2.3e-10  Score=104.73  Aligned_cols=328  Identities=17%  Similarity=0.117  Sum_probs=194.2

Q ss_pred             hcChhhHHHHHHHHHHHHHHhCCCC-CCeE--ECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEE---ecCCCc
Q psy12303        105 EIAPVFILMETVVLEKMRQIIGWQG-GDSI--LAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMF---TSDQCH  178 (480)
Q Consensus       105 ~~~~~~~~~e~~~~~~la~~~g~~~-~~~~--~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl---~~~~~h  178 (480)
                      .......++|.-..+..-+.||+++ .+++  -.-+||-||+.+..+...              |++ +|.   .++..|
T Consensus        79 GGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtall~--------------Ph~-RiMGLDLP~GGH  143 (477)
T KOG2467|consen   79 GGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTALLK--------------PHE-RIMGLDLPSGGH  143 (477)
T ss_pred             CcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhhcC--------------CCC-eeeeccCCCCCc
Confidence            3445567788777788888999976 3443  344788899987777654              323 332   233445


Q ss_pred             hhHHHHHHHcCCCCCC----eEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHc
Q psy12303        179 YSVRSCAAVCGLGTDN----CVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY  253 (480)
Q Consensus       179 ~s~~~~~~~~g~~~~~----v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~  253 (480)
                      -|+-..-..-.+....    -....+|+ +|-||.|.||+....-     +|++|++  |++.....-|..++.+||.+.
T Consensus       144 LsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~f-----rPk~iia--G~SaY~R~~DYaR~R~Iad~~  216 (477)
T KOG2467|consen  144 LSHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLF-----RPKLIIA--GTSAYSRLIDYARFRKIADKV  216 (477)
T ss_pred             cccccccCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHhc-----CCcEEEe--ccccchhhccHHHHHHHHHhc
Confidence            4432221111111101    11223453 6899999999877654     4888876  666666778899999999999


Q ss_pred             CcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhh-cCCcccccccccccCc
Q psy12303        254 NMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCN-QMSAEYLFMQDKLYDV  332 (480)
Q Consensus       254 ~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~  332 (480)
                      |+++++|-||-.+.+.......    .++.+|+++.+.||.+-+|.+ |.+++|..-.-.... .....|-..      .
T Consensus       217 gA~Lm~DMAHISgLVAA~vips----PFey~DiVTTTTHKsLRGPRg-~mIFyRkGvk~~~~k~g~~i~ydlE------~  285 (477)
T KOG2467|consen  217 GAYLMADMAHISGLVAAGVIPS----PFEYCDIVTTTTHKSLRGPRG-AMIFYRKGVKSIKPKQGKEILYDLE------D  285 (477)
T ss_pred             CceeehhhhhHHHHHhcccCCC----cccccceeeccccccccCCcc-eeEEEeccCCcCCCCCCCcceechh------h
Confidence            9999999999877664443222    345899999999999998765 566666532111000 000011100      0


Q ss_pred             ccCC-CCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC-ceeEEEEEeecCcc
Q psy12303        333 RYDT-GDKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP-EMVNVSFWYLPTRV  409 (480)
Q Consensus       333 ~~~~-~~~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~-~~~~v~f~~~~~~~  409 (480)
                      ..+. .-.++|+|-.- ...++..+|++-..-.+.+..++..++++.|.+.|.+  .|++++..- +..++.+...|..+
T Consensus       286 kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~--~Gy~lvtgGTDnHlvLvDLr~~G~  363 (477)
T KOG2467|consen  286 KINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALIS--RGYKLVTGGTDNHLVLVDLRPKGV  363 (477)
T ss_pred             hhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH--cCceEecCCccceEEEEeccccCC
Confidence            0110 01134444333 3445666787777778899999999999999999999  799998653 34455565555555


Q ss_pred             CCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecc---cCCCCHHHHHHHHHHHHHhh
Q psy12303        410 RNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIIS---SAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       410 ~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~---~~~~t~~di~~~~~~l~~~~  477 (480)
                      ++.    ..+.+.    ++......+..+.-..+.. . ++.+|+..+   +...-++|.+++.+-|.+.+
T Consensus       364 dGa----rvE~vl----e~~~I~~NKNtvpGD~Sal-~-PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av  424 (477)
T KOG2467|consen  364 DGA----RVEKVL----ELCHIALNKNTVPGDKSAL-S-PGGIRIGTPAMTSRGFGEEDFEKVADFIDRAV  424 (477)
T ss_pred             chH----HHHHHH----HHhhhhhcCCcCCCCcccc-C-CCceeccchhhcccCccHHHHHHHHHHHHHHH
Confidence            442    111111    1112211222111111111 1 567898732   23345789888888887654

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=99.29  E-value=5.2e-10  Score=102.32  Aligned_cols=329  Identities=19%  Similarity=0.243  Sum_probs=177.5

Q ss_pred             chhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH
Q psy12303        103 TYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR  182 (480)
Q Consensus       103 ~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~  182 (480)
                      .|..+...-.    +.+.+.+.||+.-  ++-|.-|-.|-...+..++..        |. ..||+ +.++....|+-..
T Consensus        74 AYagsrs~~~----L~~avkdifGfq~--~iPthQGRgAE~Il~~i~ik~--------~~-~~pg~-~~~~~sN~~FdTT  137 (471)
T COG3033          74 AYAGSRSYYA----LADAVKDIFGFQY--TIPTHQGRGAENILIPILIKK--------GE-QEPGS-KMVAFSNYHFDTT  137 (471)
T ss_pred             hhcccccHHH----HHHHHHHhcCcee--eeeccCCccHHHHHHHHHhhh--------cc-ccCCc-cccccccceecch
Confidence            3444444434    4555778888854  455555554443333333321        11 12544 5555666777665


Q ss_pred             HHH-HHcCCCCCCeEEeeCC----------CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccc---ccChHHHHH
Q psy12303        183 SCA-AVCGLGTDNCVEVPSD----------KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGA---FDPIEEIAD  248 (480)
Q Consensus       183 ~~~-~~~g~~~~~v~~v~~~----------~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~---~~~l~~I~~  248 (480)
                      .+- ...|.   ..+-++++          -.|.+|++.|++.|++...++. |.++.....++..|.   +.+++++.+
T Consensus       138 r~h~~~ng~---~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nv-p~I~~tiT~NsagGQpVSm~n~r~v~~  213 (471)
T COG3033         138 RGHIQINGA---TPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNV-PYIVLTITNNSAGGQPVSMANMKAVYE  213 (471)
T ss_pred             hHHHHhcCC---ccccccccccccccccCCCCCccCHHHHHHHHHHhCcccC-cEEEEEEeccccCCCcchHHhHHHHHH
Confidence            554 33444   22223322          1478999999999998755443 333333333345554   467899999


Q ss_pred             HHHHcCcEEEeecccccc-cccccc----ccCc-----ccCCCCCCccceeCccccCCCcccceEEEEeCchhhH---hh
Q psy12303        249 ICQKYNMWLHVDAAWGGG-LLLSKK----YRHP-----RLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLI---SC  315 (480)
Q Consensus       249 i~~~~~~~l~vD~a~~~~-~~~~~~----~~~~-----~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~---~~  315 (480)
                      ||++|+++++.|+|-..- +.+..+    ++.-     ....++.+|-+++|..|-..++.| |++++++.....   .+
T Consensus       214 ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmG-Gfl~~~D~~~fDvy~~~  292 (471)
T COG3033         214 IAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMG-GFLCFKDDSFFDVYEEC  292 (471)
T ss_pred             HHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccceeccc-cEEEecCccHHHHHHHH
Confidence            999999999999975432 222221    1110     112244789999999999998764 888889885422   22


Q ss_pred             hcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC
Q psy12303        316 NQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA-KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE  394 (480)
Q Consensus       316 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~-~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~  394 (480)
                      ....-.+-        +...+|..   .||...  ++...|.. ..    ...+++.....+||.+.|.+  .|+.++. 
T Consensus       293 ~~~~V~~e--------G~~tYGgl---~Grdme--alAvGL~e~~~----~~yl~~Rv~Qv~YL~~~l~~--~GVpi~~-  352 (471)
T COG3033         293 RTLVVVQE--------GFPTYGGL---AGRDME--ALAVGLREGVN----FDYLAHRVAQVQYLADGLEE--AGVPIVQ-  352 (471)
T ss_pred             HhheEeec--------cccccCcc---cchhHH--HHHHHHHHhcC----cHHHHHHHHHHHHHHHHHHh--cCCeeEe-
Confidence            21111110        00111111   222222  33333332 12    33456667778888899988  7998764 


Q ss_pred             CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhc-cc-------EEEeeeeeCCc-----ccEEEEecccCCC
Q psy12303        395 PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQA-GT-------MMVGYQPLNDL-----PNFFRNIISSAAV  461 (480)
Q Consensus       395 ~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~-------~~~~~~~~~~~-----~~~~R~~~~~~~~  461 (480)
                      |.++.-+|.....-+.....+.    +-  .+.+...|... |+       +........+.     -..+|++++-..-
T Consensus       353 paGGHavfvda~~~lphip~eq----Fp--aqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtY  426 (471)
T COG3033         353 PAGGHAVFVDAGKFLPHIPAEQ----FP--AQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTY  426 (471)
T ss_pred             cCCCceEEeehhhhcCCCChhh----Cc--HHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEecccccc
Confidence            4455544432211111111111    11  12233333332 32       22222111111     2579999877778


Q ss_pred             CHHHHHHHHHHHHHhhc
Q psy12303        462 TEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       462 t~~di~~~~~~l~~~~~  478 (480)
                      |.+++|.++++++++.+
T Consensus       427 t~~HmD~V~~a~~~l~e  443 (471)
T COG3033         427 TQTHMDFVIEAFKALKE  443 (471)
T ss_pred             chhHHHHHHHHHHHHHh
Confidence            99999999999998765

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.17  E-value=2.8e-09  Score=100.76  Aligned_cols=165  Identities=18%  Similarity=0.163  Sum_probs=112.5

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecC-----CCchhHHHHHHHcCC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSD-----QCHYSVRSCAAVCGL  190 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~-----~~h~s~~~~~~~~g~  190 (480)
                      .+.+..+.+.|..  .++++++.+.|.+..+.+....               + +++++-     ..|+++...++..|.
T Consensus        72 ~~~~~~~~~~~ae--a~~ivnnn~aAVll~~~al~~~---------------~-EvVis~g~lV~gg~~~v~d~~~~aG~  133 (395)
T COG1921          72 ELAELLCGLTGAE--AAAIVNNNAAAVLLTLNALAEG---------------K-EVVVSRGELVEGGAFRVPDIIRLAGA  133 (395)
T ss_pred             HHHHHHhcccchh--heeeECCcHHHHHHHHhhhccC---------------C-eEEEEccccccCCCCChhHHHHHcCC
Confidence            3344444444444  4888888888888777666431               2 233222     579999999999998


Q ss_pred             CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccc--cChHHHHHHHHHcCcEEEeecccccccc
Q psy12303        191 GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAF--DPIEEIADICQKYNMWLHVDAAWGGGLL  268 (480)
Q Consensus       191 ~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~--~~l~~I~~i~~~~~~~l~vD~a~~~~~~  268 (480)
                         ++  +++....+-...+++.+|.++      ++++.-++.++. |..  .++++++++|+++|+++++|.+.|...-
T Consensus       134 ---~l--~EvG~tn~t~~~d~~~AIne~------ta~llkV~s~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~  201 (395)
T COG1921         134 ---KL--VEVGTTNRTHLKDYELAINEN------TALLLKVHSSNY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVD  201 (395)
T ss_pred             ---EE--EEecccCcCCHHHHHHHhccC------CeeEEEEeeccc-cccccccHHHHHHHHHHcCCCEEEecCCccccc
Confidence               44  444455567889999999988      777766666554 544  4678899999999999999998866433


Q ss_pred             ccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhh
Q psy12303        269 LSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISC  315 (480)
Q Consensus       269 ~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~  315 (480)
                      .-+..+. .+ . .++|.+++|++|.+++|. .|++. ..+++....
T Consensus       202 ~e~~l~~-~l-a-~GaDLV~~SgdKllgGPq-aGii~-GkKelI~~l  243 (395)
T COG1921         202 KEPDLRE-AL-A-LGADLVSFSGDKLLGGPQ-AGIIV-GKKELIEKL  243 (395)
T ss_pred             cccchhH-HH-h-cCCCEEEEecchhcCCCc-cceEe-chHHHHHHH
Confidence            1111110 11 1 189999999999999976 45554 666666544

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.11  E-value=2.8e-08  Score=92.80  Aligned_cols=313  Identities=11%  Similarity=0.009  Sum_probs=163.6

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCe
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNC  195 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v  195 (480)
                      ++++.+++++|.++.+++...++|-.++.-+.+..-. +.......-....++.+.+++.+.|..+-..++.+|+   ++
T Consensus        73 e~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~-~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E~~Gi---em  148 (425)
T PF12897_consen   73 EARELFAELLGVPPENVIVGGNSSLNLMHDTISRAML-HGVPGSETPWCKEEKVKFLCPVPGYDRHFAITEHFGI---EM  148 (425)
T ss_dssp             HHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHH-H--TT-SS-GGGSS--EEEEEES--HHHHHHHHHCT----EE
T ss_pred             HHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHh-cCCCCCCCCchhccCceEEecCCCchHHHHHHHhhCc---EE
Confidence            4688899999999989888888886655544332111 0000000000011255899999999999999999999   99


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEE-EeccCCCccccccChHHHHHHH----HHcCcEEEeecccccccccc
Q psy12303        196 VEVPSDKRGRLIPSELERLVLERKAKGDIPFFV-NCTSGTTVLGAFDPIEEIADIC----QKYNMWLHVDAAWGGGLLLS  270 (480)
Q Consensus       196 ~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v-~~~~~~~~~G~~~~l~~I~~i~----~~~~~~l~vD~a~~~~~~~~  270 (480)
                      +.||.+++| .|++.+|+.+.++..    ++.| ++.--+||+|.+..=+-+.+++    ...++.+..|-||+...+..
T Consensus       149 i~VpM~~dG-PDmD~Ve~LV~~D~s----vKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~  223 (425)
T PF12897_consen  149 IPVPMTEDG-PDMDMVEELVAEDPS----VKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYD  223 (425)
T ss_dssp             EEEEEETTE-E-HHHHHHHTHTSTT----EEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSS
T ss_pred             EecCCCCCC-CCHHHHHHHHhcCCc----cceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccc
Confidence            999998877 689999999876521    4544 6667789999998766666665    35689999999999988733


Q ss_pred             ccccC--------cccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcccc
Q psy12303        271 KKYRH--------PRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQ  342 (480)
Q Consensus       271 ~~~~~--------~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  342 (480)
                      +..+.        ..-.|-.+--++..|.+|.-+.+.|.+++......+...........+ +                 
T Consensus       224 ~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~~~~~tI-g-----------------  285 (425)
T PF12897_consen  224 EEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKKHLSVQTI-G-----------------  285 (425)
T ss_dssp             SSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHHHH-S-------------------
T ss_pred             cccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHHHHHHHHHHhcCcee-C-----------------
Confidence            22111        011232233355678999999878888877654432211000000000 0                 


Q ss_pred             CCCCCCchHHHHHHHHh-cHH-HHHHHHHHHHH--------HHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCC
Q psy12303        343 CGRHNDIFKLWLQWRAK-GDE-GFEKQIDRLME--------LAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNM  412 (480)
Q Consensus       343 ~~r~~~~l~~~~~l~~~-g~~-~~~~~~~~~~~--------l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~  412 (480)
                          .+-+......+.+ ..+ |+.+..+++.+        ..+.|.++|.. -.++--+..|.++.|+.....++    
T Consensus       286 ----pdKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~-~~~ia~Wt~P~GGYFIsld~~~G----  356 (425)
T PF12897_consen  286 ----PDKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGD-GLGIASWTKPKGGYFISLDVLDG----  356 (425)
T ss_dssp             ------HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGT-GGTSEEE---SBSS-EEEEESTT----
T ss_pred             ----ccHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCC-CCCeeEecCCCCceEEEEecCCC----
Confidence                1122233333333 234 66555555543        23445556662 14566667888877654333222    


Q ss_pred             chhhHHHHhhhhhHHHHHHHHhcccEEEeee-eeC----CcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        413 PHEKRLNILGEITPILKGRMMQAGTMMVGYQ-PLN----DLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       413 ~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~-~~~----~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                                 ..+++.+...+.|+.+..-+ .++    -....+|++ +++ -+.+|++...+.+.-++
T Consensus       357 -----------~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiA-PS~-P~leel~~Am~~~~~cv  413 (425)
T PF12897_consen  357 -----------TAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIA-PSY-PSLEELETAMDVFATCV  413 (425)
T ss_dssp             ------------HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE---SS-S-HHHHHHHHHHHHHHH
T ss_pred             -----------hHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEec-CCC-CCHHHHHHHHHHHHHHH
Confidence                       24678888889996554411 111    115689998 654 37888998888776443

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=99.11  E-value=1.6e-08  Score=93.72  Aligned_cols=335  Identities=15%  Similarity=0.094  Sum_probs=184.9

Q ss_pred             cccccCC-CChHHhHHHHHHHHcCcCC---cchh---cChhhHHHHHHHHHHHHHHhCCCC-CCeEECCCh-hHHHHHHH
Q psy12303         76 MNQLSCG-LDVVSMAGEWLIATANTNM---FTYE---IAPVFILMETVVLEKMRQIIGWQG-GDSILAPGG-SISNLYAF  146 (480)
Q Consensus        76 ~~~~~~~-~~~~~~~~~~l~~~~~~~~---~~~~---~~~~~~~~e~~~~~~la~~~g~~~-~~~~~t~gg-t~a~~~al  146 (480)
                      ++|..+| ..|+.++..+-....+.+.   ..-+   .+..+..+-.++.+.++++++.|. ..+.|..|| |....++.
T Consensus         7 ~nFsaGPa~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p   86 (365)
T COG1932           7 YNFSAGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAP   86 (365)
T ss_pred             CCCCCCcccCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHH
Confidence            3443333 3355555444444444333   1112   234455666678899999999976 456666555 44454444


Q ss_pred             HHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeC--CCCCC-CCHHHHHHHHHHHHHCCC
Q psy12303        147 LAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPS--DKRGR-LIPSELERLVLERKAKGD  223 (480)
Q Consensus       147 ~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~--~~~~~-~d~~~L~~~i~~~~~~~~  223 (480)
                      +-+...       ++.     + -|....-+..+...+-..... . .+..+..  +..+. .+++...  +.++     
T Consensus        87 ~nLl~~-------~~~-----~-yv~~g~Ws~~a~~eA~~~~~~-~-~~~~~~~~~~~~~~iP~~~~~~--~~~~-----  144 (365)
T COG1932          87 MNLLGK-------RGT-----D-YVDTGAWSEFAIKEAKKVGKQ-P-KLIDARIEEAGYGSIPDLSKWD--FSDN-----  144 (365)
T ss_pred             Hhhhcc-------cCc-----e-eEeeeehhHhHHHHHHHhccc-c-cccccceeccCccCCCChhhcc--cCCC-----
Confidence            444332       000     1 243433333344333333221 1 2222211  11222 2333332  2222     


Q ss_pred             ccEEEEeccCCCccccccC-hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccce
Q psy12303        224 IPFFVNCTSGTTVLGAFDP-IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCS  302 (480)
Q Consensus       224 ~~~~v~~~~~~~~~G~~~~-l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g  302 (480)
                       ...|.+++-.|.+|.-.| ...+..     +..+++|+..+.+..+.|..+         .|.+.++.+|.++ |-|.+
T Consensus       145 -~ayv~~~~NeTi~Gv~v~~~p~~~~-----~~~~v~D~SS~ilsr~iDvsk---------~dviyagaQKnlG-paGlt  208 (365)
T COG1932         145 -DAYVHFCWNETISGVEVPELPDIGS-----DGLLVADASSAILSRPIDVSK---------YDVIYAGAQKNLG-PAGLT  208 (365)
T ss_pred             -ccEEEEecCCcccceEccCCCCCCC-----CceEEEecccHHhcCCCChhH---------cceEEEehhhccC-ccceE
Confidence             446777777788997643 333321     178999999988887777654         4999999999999 67899


Q ss_pred             EEEEeCchhhHhhhcC-Ccccccccc-cccCcccCCCCccccCCCCCCchHHHHH---HHHh-cHHHHHHHHHHHHHHHH
Q psy12303        303 TIHFKQDGLLISCNQM-SAEYLFMQD-KLYDVRYDTGDKVIQCGRHNDIFKLWLQ---WRAK-GDEGFEKQIDRLMELAE  376 (480)
Q Consensus       303 ~~~~~~~~~~~~~~~~-~~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~l~~~~~---l~~~-g~~~~~~~~~~~~~l~~  376 (480)
                      ++++|+. .+.+.... .+.-+.... ...+..+     +.     ...++++..   ++.+ ..-|++.+.++..+.++
T Consensus       209 vvIvr~~-~l~r~~~~~~P~if~y~~~~~~~s~y-----NT-----Pptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~  277 (365)
T COG1932         209 VVIVRPD-LLERAESYTLPSIFDYLTHADNGSMY-----NT-----PPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQ  277 (365)
T ss_pred             EEEEcHH-HHhcccccCCchHhhchhhhccCCcc-----CC-----cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9988765 44444332 222111100 0001111     10     112222222   2322 44578888999999999


Q ss_pred             HHHHHHhcCCCCeEEec---CCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEE
Q psy12303        377 YMVKKIKSMPDKFYLIL---EPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFR  453 (480)
Q Consensus       377 ~l~~~l~~~~~g~~~~~---~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R  453 (480)
                      .|.+.+.+ .+-+.-..   .....++||.+....            +   .+.+...+.+.|.+....  ++. .+.+|
T Consensus       278 ~LY~~id~-s~fy~~~v~~~~RS~mnV~f~~~~~~------------l---d~~fv~eae~~gl~~lkG--hr~-vgGmR  338 (365)
T COG1932         278 LLYDWIDK-SDFYRNLVAKANRSRMNVTFTLVDAE------------L---DKGFVAEAEAAGLIYLKG--HRS-VGGLR  338 (365)
T ss_pred             HHHHHHHh-CCccccccchhhccceeEEEEcCcHH------------H---HHHHHHHHHHcCCceecc--ccC-CCcee
Confidence            99999999 53222211   234567888654222            2   245566666777544332  233 34599


Q ss_pred             EecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        454 NIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       454 ~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ++ +......++++.|++-++.+.++
T Consensus       339 as-iynA~~~e~veaL~~fm~~f~~~  363 (365)
T COG1932         339 AS-IYNAVPLEDVEALTDFMDWFEET  363 (365)
T ss_pred             ee-eecCCCHHHHHHHHHHHHHHHHh
Confidence            99 88888999999999999887543

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.07  E-value=3.5e-08  Score=91.98  Aligned_cols=284  Identities=12%  Similarity=0.077  Sum_probs=175.2

Q ss_pred             CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeC-CC-CCCCCH
Q psy12303        131 DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPS-DK-RGRLIP  208 (480)
Q Consensus       131 ~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~-~~-~~~~d~  208 (480)
                      ..+-|.|||.|+..+..-.....            | +..|.+|+++.+.+.......|+   ++...|. |. +..+|.
T Consensus        96 ~t~Qt~GGTGAL~~~A~fl~~~~------------~-~~~vwis~PtW~NH~~If~~aGl---~v~~Y~Yyd~~~~~~df  159 (396)
T COG1448          96 ATVQTLGGTGALRVAADFLARFF------------P-DATVWISDPTWPNHKAIFEAAGL---EVETYPYYDAETKGLDF  159 (396)
T ss_pred             hheecCCcchHHHHHHHHHHHhC------------C-CceEEeCCCCcHhHHHHHHhcCC---ceeeeeccccccccccH
Confidence            46789999998888776655431            3 44799999999999999999999   6666665 33 345898


Q ss_pred             HHHHHHHHHHHHCCCccEEEEeccCCCcccccc---ChHHHHHHHHHcCcEEEeeccccccccccccccCc--ccCCCCC
Q psy12303        209 SELERLVLERKAKGDIPFFVNCTSGTTVLGAFD---PIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHP--RLTGIER  283 (480)
Q Consensus       209 ~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~---~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~  283 (480)
                      +.+.+.|+...+   ...++.-..++||||.-.   .-++|.++.++.|+.-++|-||-|+.--.++..+.  .+.....
T Consensus       160 ~~mla~L~~a~~---~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~  236 (396)
T COG1448         160 DGMLADLKTAPE---GSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGP  236 (396)
T ss_pred             HHHHHHHHhCCC---CCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCC
Confidence            888888876532   245667777899999753   36889999999999999999998877544433221  0111101


Q ss_pred             CccceeCccccCCCccc--ceEEE--EeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHH---HHH
Q psy12303        284 ADSVTWNPHKLMGTLLQ--CSTIH--FKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLW---LQW  356 (480)
Q Consensus       284 ~D~~~~s~hK~~~~p~~--~g~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~---~~l  356 (480)
                      -=+++.|++|.++. ||  .|++.  ..+.+......+.........            |+-+....+...+..   ..|
T Consensus       237 ~~lva~S~SKnfgL-YgERVGa~~vva~~~~~a~~v~sqlk~~iR~~------------ySnPP~~Ga~vva~IL~~p~L  303 (396)
T COG1448         237 ELLVASSFSKNFGL-YGERVGALSVVAEDAEEADRVLSQLKAIIRTN------------YSNPPAHGAAVVATILNNPEL  303 (396)
T ss_pred             cEEEEehhhhhhhh-hhhccceeEEEeCCHHHHHHHHHHHHHHHHhc------------cCCCchhhHHHHHHHhCCHHH
Confidence            14678899999875 43  44443  344443333332221111110            000000001111111   123


Q ss_pred             HHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC--eEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh
Q psy12303        357 RAKGDEGFEKQIDRLMELAEYMVKKIKSMPDK--FYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ  434 (480)
Q Consensus       357 ~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g--~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~  434 (480)
                      +..-...+..+.+|..++++.|.+.|++..++  +..+ ..+.++|++.       +.            +.+-..+|.+
T Consensus       304 ra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i-~~Q~GMFsy~-------Gl------------s~~QV~rLre  363 (396)
T COG1448         304 RAEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFI-ISQRGMFSYT-------GL------------SPEQVDRLRE  363 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchH-hhcCceeecC-------CC------------CHHHHHHHHH
Confidence            33334567888899999999999999872222  4443 4566777662       11            2334456666


Q ss_pred             cccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        435 AGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       435 ~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      +..++...   .   +  |+|+.  ..++..|+++++.|.++
T Consensus       364 e~~IY~v~---s---G--Ri~va--Gl~~~ni~~va~ai~~v  395 (396)
T COG1448         364 EFGIYLVA---S---G--RINVA--GLNTSNIDYVAKAIAAV  395 (396)
T ss_pred             hccEEEec---C---C--eeeec--cCChhhHHHHHHHHHhh
Confidence            55444332   1   2  77743  45889999999999875

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.07  E-value=4e-08  Score=91.19  Aligned_cols=223  Identities=13%  Similarity=0.095  Sum_probs=135.1

Q ss_pred             HHHHHHhCCCCCCeE-ECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC------
Q psy12303        119 EKMRQIIGWQGGDSI-LAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG------  191 (480)
Q Consensus       119 ~~la~~~g~~~~~~~-~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~------  191 (480)
                      +-.|+.||++..-+- -.-+||.|+..+|.....              |||..+.++..-|-.......+.|-+      
T Consensus        61 ~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~Lr--------------pGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e  126 (403)
T PF06838_consen   61 RIYADVFGAEDALVRPQFVSGTHAIALALFGVLR--------------PGDELLSITGKPYDTLEEVIGIRGNGPGSLKE  126 (403)
T ss_dssp             HHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH----------------TT-EEEESSSS--CCHHHHHTSSSSSSSSTGG
T ss_pred             HHHHHHhCchhhhhcccccchHHHHHHHHHhcCC--------------CCCeEEEcCCCchhhHHHHhCCCCCCCCChHH
Confidence            447999999752111 123689999999987765              77867777877788888887665421      


Q ss_pred             -CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccc-------cccChHHHHHHHHHc--CcEEEeec
Q psy12303        192 -TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG-------AFDPIEEIADICQKY--NMWLHVDA  261 (480)
Q Consensus       192 -~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G-------~~~~l~~I~~i~~~~--~~~l~vD~  261 (480)
                       +.+...||..++|.+|.+.++++++++      +++|.+.=   ..|       .++.++++.+++|+.  ++++.||-
T Consensus       127 ~Gi~Y~~v~L~~dg~~D~~~i~~~~~~~------tk~v~IQR---SrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDN  197 (403)
T PF06838_consen  127 FGIKYREVPLTEDGTIDWEAIKKALKPN------TKMVLIQR---SRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDN  197 (403)
T ss_dssp             GT-EEEE--B-TTSSB-HHHHHHHHHTT------EEEEEEE----S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-
T ss_pred             hCceeEEEeecCCCCcCHHHHHHhhccC------ceEEEEec---CCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeC
Confidence             236788999999999999999999976      88888743   344       335567777777766  68999999


Q ss_pred             cccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhh-cCCcccccccccccCcccCCCCc
Q psy12303        262 AWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCN-QMSAEYLFMQDKLYDVRYDTGDK  339 (480)
Q Consensus       262 a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~  339 (480)
                      |||-+.-.......       ++|.+..|+-|..+++ ..+|..++.++++.+.+. ...++-+..              
T Consensus       198 CYGEFvE~~EP~~v-------GADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~RLTaPGiG~--------------  256 (403)
T PF06838_consen  198 CYGEFVETQEPTEV-------GADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAYRLTAPGIGK--------------  256 (403)
T ss_dssp             TTTTTTSSS-GGGG-------T-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHHHHHS-TTTGG--------------
T ss_pred             CcceeccccCcccc-------chhheeccceeCCCCCccCcCCEEechHHHHHHHHhhhcCCcccc--------------
Confidence            99998765544444       9999999999998876 457888888887776532 122222211              


Q ss_pred             cccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        340 VIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       340 ~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                        ++|-.+.......-    |.---...+....+-+......+++  .|+++..
T Consensus       257 --e~G~t~~~~R~~~Q----GlFlAP~vV~eAlKgaif~A~~fe~--lG~~v~P  302 (403)
T PF06838_consen  257 --EVGATLGTNRLMFQ----GLFLAPHVVGEALKGAIFAAALFEK--LGFEVSP  302 (403)
T ss_dssp             --GSS--TTTHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH--TT-EEES
T ss_pred             --ccccCcchHHHHHh----HHhhchHHHHHHHHHHHHHHHHHHH--cCCcCCC
Confidence              12221222211110    2222355566677777777777777  7999864

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>KOG1403|consensus

Probab=99.06  E-value=3.3e-08  Score=88.43  Aligned_cols=321  Identities=16%  Similarity=0.109  Sum_probs=189.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHc--
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVC--  188 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~--  188 (480)
                      +++.+-.+...+.+=+.+  -..|+++||+||-.||+.||+..       +    . ..+|.+....|..+...+++.  
T Consensus        86 d~lv~cA~~l~stlPeLs--vc~F~NSGSEANDLALRLAR~ft-------k----h-qDvItldHAYHGHl~s~mE~SPY  151 (452)
T KOG1403|consen   86 DELVQCARTLTSTLPELS--VCFFVNSGSEANDLALRLARNFT-------K----H-QDVITLDHAYHGHLQSVMEVSPY  151 (452)
T ss_pred             HHHHHHHHHHhhcCCCce--EEEEecCCchhhHHHHHHHHhhc-------c----c-CceEEEechhccceeeeeeccce
Confidence            344444444555554433  48899999999999999999852       1    1 236777766676666655554  


Q ss_pred             ----CCC---CCCeEEeeCCC--CC-------------CCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----
Q psy12303        189 ----GLG---TDNCVEVPSDK--RG-------------RLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----  242 (480)
Q Consensus       189 ----g~~---~~~v~~v~~~~--~~-------------~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----  242 (480)
                          |-+   ++-|...|+.+  .|             ..-.+.+++.+++...+|...++.++.+-++--|.+-|    
T Consensus       152 KF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagY  231 (452)
T KOG1403|consen  152 KFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGY  231 (452)
T ss_pred             eccCCCCcCCCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhH
Confidence                111   11233334432  11             11235678888887777877888888888777787755    


Q ss_pred             hHHHHHHHHHcCcEEEeecccccccccccc-ccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcc
Q psy12303        243 IEEIADICQKYNMWLHVDAAWGGGLLLSKK-YRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAE  321 (480)
Q Consensus       243 l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~-~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~  321 (480)
                      .+++++..+.+|-..|.|+++-++...... +.+ ...++ -.|++++  .|-++.+.+.+++.... ++.+......-.
T Consensus       232 Fq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWaf-q~y~f-iPDIVtm--gKpmGNGhPVa~Vattk-eIA~Af~atgv~  306 (452)
T KOG1403|consen  232 FQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAF-QTYNF-IPDIVTM--GKPMGNGHPVAAVATTK-EIAQAFHATGVE  306 (452)
T ss_pred             HHHHHHHHhcCCCeEEeehhhhcccccchhhhhh-hhhcc-ccchhee--cccCCCCCeeeEEeccH-HHHHHhccccce
Confidence            789999999999999999999887664332 222 23333 5788884  58888788888888643 444433333344


Q ss_pred             cccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEE
Q psy12303        322 YLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVS  401 (480)
Q Consensus       322 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~  401 (480)
                      |+...                +|.+.+.....+.++....   +++.++..+..++|...|++.-...+++++..+. -.
T Consensus       307 YFNTy----------------GGnPVsCAv~laVm~v~e~---E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGv-GL  366 (452)
T KOG1403|consen  307 YFNTY----------------GGNPVSCAVGLAVMRVCED---ENLQEHAQQVGEKLEVLLRRLKQKHECIGDVRGV-GL  366 (452)
T ss_pred             ehhcc----------------CCCchhHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHhhhccceeccccc-eE
Confidence            44221                2222222233333444333   4555777788888888877611245666654432 22


Q ss_pred             EEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        402 FWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       402 f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      |+-+.- +++.....-..   +.+.-+..+|.+...+.++... ++ .+.+.+- +..--+++++++++..|.+++
T Consensus       367 FiGIdL-VkD~~tRtP~t---k~A~~~v~rlke~y~VLlsaDG-Ph-~NilKiK-PPmCFneena~e~v~~ld~iL  435 (452)
T KOG1403|consen  367 FIGIDL-VKDRKTRTPDT---KEAHWVVNRLKELYRVLLSADG-PH-RNILKIK-PPMCFNEENADEFVLGLDEIL  435 (452)
T ss_pred             EEeeee-ecccccCCCcH---HHHHHHHHHHHHhhhEEEecCC-CC-CceeecC-CCcccChhhHHHHHHHHHHHH
Confidence            332210 01100000000   0123456777777666666422 23 5788876 555557888888888887764

>KOG2040|consensus

Probab=98.99  E-value=1.3e-07  Score=92.95  Aligned_cols=369  Identities=14%  Similarity=0.057  Sum_probs=212.0

Q ss_pred             HHHHHHhcCCCCCCCCCCHHHHHHHHHhhccCCccCCCCCccccccCCCChHHhHHHHHHH--HcCcC-CcchhcChhhH
Q psy12303         35 PAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIA--TANTN-MFTYEIAPVFI  111 (480)
Q Consensus        35 p~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~--~~~~~-~~~~~~~~~~~  111 (480)
                      |..++...+.++| .|....++++.++++...+..|.+-.=++|+.+. .|+.++..++.+  ++.+. ++..+.+.+  
T Consensus        85 P~~Ir~~~~l~~~-~~~~E~eml~~l~~ia~kNk~~ksfIGmGYyn~~-vP~~I~RNilenp~W~TqYTPYQ~EIsQG--  160 (1001)
T KOG2040|consen   85 PKSIRLKRPLKMD-KPLCESEMLQHLEDIASKNKIWKSFIGMGYYNTH-VPAVILRNILENPGWYTQYTPYQAEISQG--  160 (1001)
T ss_pred             chhhcccchhcCC-CCcCHHHHHHHHHHHHhhhhHHHHhhcccccccc-CcHHHHHHhhhCCcceeccCCCchhhhhh--
Confidence            3445555556665 6889999999999988766656554444455443 344455555543  22211 112222222  


Q ss_pred             HHHH--HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        112 LMET--VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       112 ~~e~--~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .+|.  .....++++.|.|-.+..+..-||.|-....++.+..             . +.+++++...|+-....++.-.
T Consensus       161 RLEsllNyQTmi~dlTGL~~aNASLLDEgTAaaEAm~l~~~~~-------------k-rkk~vvd~~~hpqtlsV~~TRa  226 (1001)
T KOG2040|consen  161 RLESLLNYQTMITDLTGLPMANASLLDEGTAAAEAMALCNRIN-------------K-RKKFVVDSNCHPQTLSVVKTRA  226 (1001)
T ss_pred             hHHHHhhhHHhhhhccCCcccchhhhccchhHHHHHHHHHhhc-------------c-cceEEecCCCCcchhhhhhccc
Confidence            3333  2457789999999888888888888777655555543             1 2268889999998877776542


Q ss_pred             CCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccc
Q psy12303        190 LGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLL  269 (480)
Q Consensus       190 ~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~  269 (480)
                      -+. .+. +.+.     |+.+...-.       .....|++..|.| .|.+.|..++++.+++.|..+++-.---...+.
T Consensus       227 ~~~-~i~-v~~~-----~~~~~~~s~-------~~v~gvlvQYP~t-~G~i~d~~el~~~a~~~~s~vv~atDLLaLtiL  291 (1001)
T KOG2040|consen  227 KGF-GIK-VVVS-----DIKEADYSS-------KDVSGVLVQYPDT-EGSVLDFDELVELAHANGSLVVMATDLLALTIL  291 (1001)
T ss_pred             ccc-cee-EEec-----CHHHhhccc-------cceeEEEEEcCCC-CCcccCHHHHHHHhhccCceEEEeehhhHHHcc
Confidence            111 222 2221     332222111       1278899999954 699999999999999999876552211111112


Q ss_pred             cccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccc---------------cCccc
Q psy12303        270 SKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKL---------------YDVRY  334 (480)
Q Consensus       270 ~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~  334 (480)
                      -+...+       ++|++..|.+.++ +|.|-|.--..--...+......++.+.+-...               ...+.
T Consensus       292 rpPgef-------GaDIavGSsQRFG-VPlGYGGPHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrR  363 (1001)
T KOG2040|consen  292 RPPGEF-------GADIAVGSSQRFG-VPLGYGGPHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRR  363 (1001)
T ss_pred             CChhhc-------CceeeeccccccC-ccccCCCchHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhh
Confidence            222233       8999999998874 466654422111111112222233333221111               11111


Q ss_pred             CCCCccccCCCCCCchHHHHHH-----HHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCcc
Q psy12303        335 DTGDKVIQCGRHNDIFKLWLQW-----RAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRV  409 (480)
Q Consensus       335 ~~~~~~~~~~r~~~~l~~~~~l-----~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~  409 (480)
                      |-.+.++ |    .+-++.+-+     ..+|.+|++++.++.+.++..|...|+.  .|-+++.++-+-.+.++.-. . 
T Consensus       364 DKATSNI-C----TAQALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~--aghel~~k~fFDTLkI~~~~-s-  434 (1001)
T KOG2040|consen  364 DKATSNI-C----TAQALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKN--AGHELQHKPFFDTLKIRCGC-S-  434 (1001)
T ss_pred             hccchhh-h----HHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhh--cchhhccccccceEEEEecC-c-
Confidence            1111111 1    111111111     2349999999999999999999999998  68888776655555554321 0 


Q ss_pred             CCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        410 RNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       410 ~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                                     .+++..+..++++-+...   +  .+.+-++ .-..++++|++.++..+.
T Consensus       435 ---------------~~~~l~rA~~~~iNlr~~---e--d~tigvs-lDETv~~~DvddLl~vf~  478 (1001)
T KOG2040|consen  435 ---------------AEEVLDRAAKRQINLRLV---E--DGTIGVS-LDETVTEKDVDDLLWVFN  478 (1001)
T ss_pred             ---------------HHHHHHHHHhhcCceEEe---e--cCceEEe-ecccccHHHHHHHHHHHc
Confidence                           134555555555222221   1  3567777 778889999999998875

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=98.87  E-value=1.5e-09  Score=101.64  Aligned_cols=168  Identities=20%  Similarity=0.208  Sum_probs=40.5

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchh------HHHHHHHcC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS------VRSCAAVCG  189 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s------~~~~~~~~g  189 (480)
                      .+.+.++.+.|+..  ++++++...|++.++.+...               |+ +|++|...-..      +...++..|
T Consensus        51 ~v~~ll~~ltgAea--A~VvNnnaAAv~L~l~~la~---------------~~-EvIvsRGelVeiGgsFRip~vm~~sG  112 (367)
T PF03841_consen   51 HVEELLCELTGAEA--ALVVNNNAAAVLLALNTLAK---------------GK-EVIVSRGELVEIGGSFRIPDVMRQSG  112 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccc--cccccccccccccccccccc---------------cc-cccccccccccccccccccccccccc
Confidence            45667889999875  78888888888888776543               13 67777655332      333444445


Q ss_pred             CCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcc--ccc--cChHHHHHHHHHcCcEEEeeccccc
Q psy12303        190 LGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVL--GAF--DPIEEIADICQKYNMWLHVDAAWGG  265 (480)
Q Consensus       190 ~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~--G~~--~~l~~I~~i~~~~~~~l~vD~a~~~  265 (480)
                      .   .++.|-+.  .+..+++++++|.++      |.++.-.+.+|..  |..  .+++++++++++|++++++|..-|.
T Consensus       113 a---~lvEVGtt--N~t~~~Dye~AI~e~------Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~  181 (367)
T PF03841_consen  113 A---RLVEVGTT--NRTHLSDYEKAITEN------TAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGL  181 (367)
T ss_dssp             -----------------------------------------------------------HHHHHHHHHT--EEEE-TTHH
T ss_pred             c---cccccccc--ccccccccccccccc------ccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCC
Confidence            5   55555433  345678899999998      8888888877763  322  4799999999999999999997755


Q ss_pred             ccccccccc---CcccCC--CCCCccceeCccccCCCcccceEEEEeCchhhHhh
Q psy12303        266 GLLLSKKYR---HPRLTG--IERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISC  315 (480)
Q Consensus       266 ~~~~~~~~~---~~~~~~--~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~  315 (480)
                      ..- ...+.   .|.+..  -.++|.+++|+.|.+++|. +|+++ ..+++++..
T Consensus       182 l~d-l~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ-aGiI~-Gkk~lI~~l  233 (367)
T PF03841_consen  182 LVD-LSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQ-AGIIV-GKKELIEKL  233 (367)
T ss_dssp             HHH-HHTT----------CCCCT-SEEEEETTSSSSS-S--EEEE-EEHHHHHHH
T ss_pred             CcC-cccccCccccHHHHHhhcCCCEEEEECCCcCCCCC-eEEEE-eCHHHHHHH
Confidence            321 11110   011111  1389999999999999987 57666 556666544

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>KOG3843|consensus

Probab=98.86  E-value=2.7e-08  Score=87.45  Aligned_cols=231  Identities=17%  Similarity=0.123  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHHHHHhCCCC-CCeEECCChh-HHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHc
Q psy12303        111 ILMETVVLEKMRQIIGWQG-GDSILAPGGS-ISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVC  188 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~-~~~~~t~ggt-~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~  188 (480)
                      ..+..++....-.+.|... .+.++++-+| +++...+...|.++            |.-.-|+......-|..+..-..
T Consensus        56 ~~isne~a~~~i~l~glhav~nc~vvpl~tgmslslc~~s~r~kr------------pkakyiiw~ridqks~~ksi~~a  123 (432)
T KOG3843|consen   56 ACISNEFAKDAIHLAGLHAVANCFVVPLATGMSLSLCFLSLRHKR------------PKAKYIIWLRIDQKSCFKSIIHA  123 (432)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhceeEEeccccccHHHHHHHHhhcC------------CcccEEEEEecchHHHHHHHHhc
Confidence            3444555556666777632 2233333222 44555555555531            32336778888888888888888


Q ss_pred             CCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccc---ccChHHHHHHHHHcCcEEEeeccc
Q psy12303        189 GLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGA---FDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       189 g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~---~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                      |..+  ++.-++-+  .-..|++++++.+++..     +-||...+.+|.+-+   .|.+++|+.||..|+++-+|..||
T Consensus       124 gfep--iiie~i~d~d~l~tdleav~~~iee~g-----~dcilci~sttscfapr~pd~leaiaaica~~diphivnnay  196 (432)
T KOG3843|consen  124 GFEP--IIIENILDGDELITDLEAVEAIIEELG-----EDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAY  196 (432)
T ss_pred             CCCc--eeeeccccchHHHHhHHHHHHHHHHhC-----CceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhcccc
Confidence            8853  33333322  24668889988888763     456666566555443   378999999999999999999999


Q ss_pred             cccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccC
Q psy12303        264 GGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQC  343 (480)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  343 (480)
                      |...-.+-..-. ....+.++|.++-|..|.+.+|.|..++..-+...++...   ..|-                    
T Consensus       197 glqsee~i~~ia-a~~~~grida~vqsldknf~vpvggaiia~fk~n~iq~ia---k~yp--------------------  252 (432)
T KOG3843|consen  197 GLQSEECIHKIA-AAAECGRIDAFVQSLDKNFMVPVGGAIIAAFKDNFIQEIA---KMYP--------------------  252 (432)
T ss_pred             ccchHHHHHHHH-HHhhhccHHHHHHHhhhcceeecchhHhhHhHHHHHHHHH---HhCC--------------------
Confidence            875432211000 1122347899999999999999876665543333333322   1121                    


Q ss_pred             CCC--CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12303        344 GRH--NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKS  384 (480)
Q Consensus       344 ~r~--~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~  384 (480)
                      ||.  ..++.+..+|..+|+.++.+...+..++--+++..+.+
T Consensus       253 grasa~ps~dllitll~~gqn~f~e~~~eqkemf~~l~~ki~~  295 (432)
T KOG3843|consen  253 GRASASPSLDLLITLLSLGQNAFKELFGEQKEMFLKLRNKIIK  295 (432)
T ss_pred             CccccCccHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            111  24567778888889999988888877777777766554

>KOG1405|consensus

Probab=98.49  E-value=9.6e-06  Score=74.69  Aligned_cols=222  Identities=16%  Similarity=0.118  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHHCCCccEEEEeccCCCccccc----cChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCC-C
Q psy12303        208 PSELERLVLERKAKGDIPFFVNCTSGTTVLGAF----DPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGI-E  282 (480)
Q Consensus       208 ~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~----~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~-~  282 (480)
                      ++++|+.|.+...+...++++++...++.-|.-    +=+..+.+|+++||+-++||+++.|+......+.+ ...++ .
T Consensus       255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaH-ehw~l~~  333 (484)
T KOG1405|consen  255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAH-EHWNLDS  333 (484)
T ss_pred             HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeee-hhcCCCC
Confidence            467888888877777778899999888887754    33799999999999999999999998877766655 33333 3


Q ss_pred             CCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHH
Q psy12303        283 RADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDE  362 (480)
Q Consensus       283 ~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~  362 (480)
                      -+|.+++|  |-+..   .| ++ .+..+.     ...+|-.           +.+|   +|-++..+-+-..++.+..+
T Consensus       334 PpD~vTFS--KK~q~---gG-ff-h~~~fr-----pn~pYri-----------fNTW---mGdP~k~lll~~vv~~I~~~  387 (484)
T KOG1405|consen  334 PPDVVTFS--KKFQT---GG-FF-HDEEFR-----PNEPYRI-----------FNTW---MGDPSKNLLLEEVVQEIKRE  387 (484)
T ss_pred             Cccceehh--hhhhc---Cc-cc-cCcccC-----CCchHHH-----------hhhh---cCChHHHHHHHHHHHHHhHH
Confidence            57888854  54443   23 33 343332     1222211           1111   22223344444444444443


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEE
Q psy12303        363 GFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMM  439 (480)
Q Consensus       363 ~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~  439 (480)
                      +   +++......++|...|.+.   .|+.-- .-...++++-+..|..       +.       ..++...+..+|.-+
T Consensus       388 ~---Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~-~~RGrGTF~a~d~ps~-------~~-------Rdk~i~~~~~nGv~~  449 (484)
T KOG1405|consen  388 D---LLNNVAHVGKALLKGLLELQAKYPGKIN-NLRGRGTFIAWDCPSG-------SI-------RDKLILIARLNGVNL  449 (484)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHhCchhhh-cccccceEEEEeCCCh-------HH-------HHHHHHHHHHcCcee
Confidence            3   4455555666666655441   444321 1122445554443322       11       134556666777332


Q ss_pred             EeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        440 VGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       440 ~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      -..    | ...+|+- ++..-++.+.+-+++.+.++++.|
T Consensus       450 GGC----g-~~siRfR-PsLvf~~~Ha~i~l~~~~k~l~~l  484 (484)
T KOG1405|consen  450 GGC----G-DKSIRFR-PSLVFRKHHADIFLDIFDKILAGL  484 (484)
T ss_pred             ccc----c-cceeeec-cceeehhhhHHHHHHHHHHHhccC
Confidence            222    2 3578887 888889999999999999988764

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=98.33  E-value=9.9e-06  Score=72.97  Aligned_cols=166  Identities=14%  Similarity=0.156  Sum_probs=114.9

Q ss_pred             HHHHhCCCCC--CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC-------
Q psy12303        121 MRQIIGWQGG--DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG-------  191 (480)
Q Consensus       121 la~~~g~~~~--~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~-------  191 (480)
                      .|+.||.+..  ...|. +||.|+..||.....              |||..+++...-+...+....+-|-+       
T Consensus        74 yA~vf~aE~a~VRpq~i-sGTHAI~~aLfg~LR--------------pgDell~i~G~PYDTLeevIG~rg~~~gSL~df  138 (416)
T COG4100          74 YAQVFGAEAALVRPQII-SGTHAIACALFGILR--------------PGDELLYITGSPYDTLEEVIGLRGEGQGSLKDF  138 (416)
T ss_pred             HHHHhccccceeeeeee-cchhHHHHHHHhccC--------------CCCeEEEecCCcchhHHHHhccCCCCcccHHHh
Confidence            6788888652  23344 577877777765543              77877888777777777766555421       


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccC----CCccccccChHHHHHHHHHc--CcEEEeeccccc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSG----TTVLGAFDPIEEIADICQKY--NMWLHVDAAWGG  265 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~----~~~~G~~~~l~~I~~i~~~~--~~~l~vD~a~~~  265 (480)
                      ......||...+|.+|.+.+++.+.+.      +++|.+.--    .-|+=.+.+++++..+.|+.  |+.+.||.|||.
T Consensus       139 gi~Y~~v~Lt~~gkiD~~~v~~~i~~~------tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGE  212 (416)
T COG4100         139 GIKYKAVPLTADGKIDIQAVKTAISDR------TKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGE  212 (416)
T ss_pred             CcceeecccccCCcccHHHHHHhcCcc------ceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchh
Confidence            125677899899999999999999987      888776422    12222446678888888876  689999999999


Q ss_pred             cccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHh
Q psy12303        266 GLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLIS  314 (480)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~  314 (480)
                      +.-.......       ++|.+..|+-|.-+++. -.|..+....++.+.
T Consensus       213 FvE~~EPt~v-------GaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~  255 (416)
T COG4100         213 FVEEKEPTHV-------GADLIAGSLIKNPGGGIAKTGGYIAGKAELVEA  255 (416)
T ss_pred             hhhccCcccc-------chhhhccceeeCCCCceeeccceeechHHHHHh
Confidence            8653333233       89999999999877653 345556566555543

>KOG1412|consensus

Probab=98.04  E-value=0.00059  Score=62.14  Aligned_cols=285  Identities=12%  Similarity=0.070  Sum_probs=159.3

Q ss_pred             CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeC--CCCCCCCH
Q psy12303        131 DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPS--DKRGRLIP  208 (480)
Q Consensus       131 ~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~--~~~~~~d~  208 (480)
                      .++-+-|||.|+..+..-.... +           + +..|++|.++..++...++-.|.-  .+...+.  .++-.+|+
T Consensus       101 ~~vQslsGTGAl~~~A~Fl~~~-~-----------~-~~~VY~SnPTW~nH~~if~~aGf~--tv~~Y~yWd~~~k~~d~  165 (410)
T KOG1412|consen  101 FGVQSLSGTGALRIAADFLATF-Y-----------N-KNTVYVSNPTWENHHAIFEKAGFT--TVATYPYWDAENKCVDL  165 (410)
T ss_pred             cceeeccccchhhhhHHHHHHh-c-----------c-cceeEecCCchhHHHHHHHHcCCc--eeeeeeeecCCCceecH
Confidence            4677778999887776544332 1           2 338999999999999999999852  3333333  23457888


Q ss_pred             HHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEEEeeccccccccccc-cccCc----ccC
Q psy12303        209 SELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWLHVDAAWGGGLLLSK-KYRHP----RLT  279 (480)
Q Consensus       209 ~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l~vD~a~~~~~~~~~-~~~~~----~~~  279 (480)
                      +.+...|+...+   ....|+-...+||||. ||    -..|++..++.+.....|-||-|++---+ ...|-    .-.
T Consensus       166 e~~Lsdl~~APe---~si~iLhaCAhNPTGm-DPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~  241 (410)
T KOG1412|consen  166 EGFLSDLESAPE---GSIIILHACAHNPTGM-DPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQ  241 (410)
T ss_pred             HHHHHHHhhCCC---CcEEeeeccccCCCCC-CCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhc
Confidence            877777765422   1223333344899995 44    56799999999999999999988765221 11110    111


Q ss_pred             CCCCCccceeCccccCCCc---ccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHH-
Q psy12303        280 GIERADSVTWNPHKLMGTL---LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQ-  355 (480)
Q Consensus       280 ~~~~~D~~~~s~hK~~~~p---~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~-  355 (480)
                      |++  =++|-|+.|.+|.-   .|+=.++++++.......++..-.+..            +++-+....++...-.+. 
T Consensus       242 g~e--~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~------------~~SNPPAyGArIV~kvL~t  307 (410)
T KOG1412|consen  242 GFE--LFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRS------------NWSNPPAYGARIVHKVLST  307 (410)
T ss_pred             CCe--EEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhh------------ccCCCcchhhHHHHHHhcC
Confidence            211  25666899988742   244445556664433222111111100            011111111111111110 


Q ss_pred             --HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC--CC-eEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHH
Q psy12303        356 --WRAKGDEGFEKQIDRLMELAEYMVKKIKSMP--DK-FYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKG  430 (480)
Q Consensus       356 --l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~--~g-~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~  430 (480)
                        ++..-...++.+..|..+++..|++.|.+ +  || +.=+ ..+.+++.|..                   ++..-.+
T Consensus       308 P~lre~W~~sik~MssRI~~MR~aLrd~L~a-L~TPGtWDHI-~~QiGMFSyTG-------------------Ltp~qV~  366 (410)
T KOG1412|consen  308 PELREQWIQSIKTMSSRIKKMRTALRDHLVA-LKTPGTWDHI-TQQIGMFSYTG-------------------LTPAQVD  366 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcHHHH-HhhccceeecC-------------------CCHHHHH
Confidence              11111345667777888888888888877 3  22 1100 14566666631                   1244567


Q ss_pred             HHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        431 RMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       431 ~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +|.++..+++..      .+  |++++.  .+...+|++.++|.+.++.
T Consensus       367 ~li~~h~vyLl~------~G--RInisG--LN~~NveyVAkAIde~Vr~  405 (410)
T KOG1412|consen  367 HLIENHKVYLLS------DG--RINISG--LNMKNVEYVAKAIDETVRA  405 (410)
T ss_pred             HHHHhceEEEec------CC--cEeeec--cccccHHHHHHHHHHHHHh
Confidence            787877666554      12  444322  3456788888888876653

>KOG2790|consensus

Probab=97.93  E-value=0.0021  Score=57.83  Aligned_cols=341  Identities=16%  Similarity=0.088  Sum_probs=180.6

Q ss_pred             cccccCCC-ChHHhHHHHHHHHcCcCCcch---hc---ChhhHHHHHHHHHHHHHHhCCCC-CCeEECCChhHHHHHHHH
Q psy12303         76 MNQLSCGL-DVVSMAGEWLIATANTNMFTY---EI---APVFILMETVVLEKMRQIIGWQG-GDSILAPGGSISNLYAFL  147 (480)
Q Consensus        76 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~---~~---~~~~~~~e~~~~~~la~~~g~~~-~~~~~t~ggt~a~~~al~  147 (480)
                      .+|..+|. .|.+++.++-...+|-+...-   +.   +.-+..+-......+.++++.|+ ..++|.-||-..-+.|+.
T Consensus         9 vnFaaGPAklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt~qFaAv~   88 (370)
T KOG2790|consen    9 VNFAAGPAKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGTGQFAAVP   88 (370)
T ss_pred             eecCCCcccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCcccccccc
Confidence            34444443 344556566666666554222   22   23345566677889999999976 455555444333333332


Q ss_pred             HHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC-C-CC-CCHHHHHHHHHHHHHCCCc
Q psy12303        148 AARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK-R-GR-LIPSELERLVLERKAKGDI  224 (480)
Q Consensus       148 ~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~-~-~~-~d~~~L~~~i~~~~~~~~~  224 (480)
                      .-.-.     .+.|.   +-+ -|++..-+--+...+-+. |.  .+.+..+..+ . |. -|.+.++..  ++      
T Consensus        89 lNL~g-----lK~g~---~Ad-YiVTGsWS~KA~~EAkk~-~~--~~~V~~~~k~y~ygkvPd~~~w~~~--~d------  148 (370)
T KOG2790|consen   89 LNLIG-----LKHGR---CAD-YVVTGSWSAKAAEEAKKY-GT--PNIVIPKLKSYTYGKVPDPSTWELN--PD------  148 (370)
T ss_pred             hhhhc-----cccCC---ccc-eEEeccccHHHHHHHHhh-CC--ceEEeccccccccCcCCChhhcccC--CC------
Confidence            21110     00121   223 566654333333333322 22  1233333222 1 22 244444322  22      


Q ss_pred             cEEEEeccCCCccccc-cChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceE
Q psy12303        225 PFFVNCTSGTTVLGAF-DPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCST  303 (480)
Q Consensus       225 ~~~v~~~~~~~~~G~~-~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~  303 (480)
                      ...|..|.-.|..|.- +++.    +-.-+|..++.|-..-....+.+..++         +.+....+|..+ |.|.-+
T Consensus       149 a~yvyyCaNETVHGVEf~~~P----~~~~~~~vlVaDmSSnflSrpvDvsk~---------gvi~aGAQKN~G-~aG~Tv  214 (370)
T KOG2790|consen  149 ASYVYYCANETVHGVEFDFIP----VNDPKGAVLVADMSSNFLSRPVDVSKF---------GVIFAGAQKNVG-PAGVTV  214 (370)
T ss_pred             ccEEEEecCceeeceecCCCC----CCCCCCceEEEecccchhcCCccchhc---------ceEEeccccccC-ccccEE
Confidence            4588888888999974 3333    223467889999877666666666544         678888999998 688888


Q ss_pred             EEEeCchhhHhhhcCCcccccccccc-cCcccCCCCccccCCCCCCchHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHH
Q psy12303        304 IHFKQDGLLISCNQMSAEYLFMQDKL-YDVRYDTGDKVIQCGRHNDIFKLWLQWRAK-GDEGFEKQIDRLMELAEYMVKK  381 (480)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~  381 (480)
                      +++|+. ++.......|.-+.-.... ....++    +++|   +....+-+.++.+ ..-|+.++.+...+.++.+.+.
T Consensus       215 vivr~d-llg~~~~~tP~v~dyk~~~~NnSlyN----TpP~---f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~  286 (370)
T KOG2790|consen  215 VIVRKD-LLGNALDITPSVLDYKIMDKNNSLYN----TPPC---FGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDA  286 (370)
T ss_pred             EEEehh-hhcccccCCccccceeeecccccccc----CCCe---eeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            888875 3333332333222110000 000000    0111   1111222233322 2346777778888899999999


Q ss_pred             HhcCCCCeEEe-cCC---ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecc
Q psy12303        382 IKSMPDKFYLI-LEP---EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIIS  457 (480)
Q Consensus       382 l~~~~~g~~~~-~~~---~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~  457 (480)
                      |.+ ..||-.. .+|   ..-+++|+..+..        +.       .++.....+++.  +..-++.. .+.+|.| .
T Consensus       287 iD~-s~gfy~cpVe~~~RS~MNV~Fri~~d~--------Le-------~eFLkeA~~~~m--v~LKGhRS-VGGiRAS-l  346 (370)
T KOG2790|consen  287 IDN-SNGFYRCPVEPSVRSRMNVPFRIEKDE--------LE-------AEFLKEAAKEHM--VQLKGHRS-VGGIRAS-L  346 (370)
T ss_pred             HHh-cCCeEEcccchhhhhhcccceeecchH--------HH-------HHHHHHHHHhhh--hccccccc-cccchhh-h
Confidence            999 7787653 233   3456788754222        11       222222223331  12112233 4679999 7


Q ss_pred             cCCCCHHHHHHHHHHHHHhhc
Q psy12303        458 SAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       458 ~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .-..+-++++.+++-+++..+
T Consensus       347 YNAisv~~~q~L~~~m~~F~k  367 (370)
T KOG2790|consen  347 YNAISVEEVQKLAAFMKEFQK  367 (370)
T ss_pred             hccccHHHHHHHHHHHHHHHH
Confidence            677899999999999998765

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=97.78  E-value=0.0039  Score=58.22  Aligned_cols=290  Identities=13%  Similarity=0.082  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHHHhCC---CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH
Q psy12303        111 ILMETVVLEKMRQIIGW---QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV  187 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~---~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~  187 (480)
                      .++|+. ++.|-+++|=   +...++|.+|+|+-+..|+.++-..       ...  .+....|+...+.++++......
T Consensus        46 ~eL~~~-Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~-------~~~--~~~p~~VVa~aPYY~~Y~~qt~~  115 (363)
T PF04864_consen   46 PELERQ-IRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPN-------ASP--SSSPASVVAAAPYYSSYPEQTDF  115 (363)
T ss_dssp             HHHHHH-HHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHH-------T-T--TSSSEEEEE-SS--CHHHHHCCC
T ss_pred             HHHHHH-HHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCC-------CCC--CCCCceeEecCCCccchHHHHHh
Confidence            455554 4445566663   4456899999998766666655321       000  02245788888888887777666


Q ss_pred             cCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccc
Q psy12303        188 CGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGL  267 (480)
Q Consensus       188 ~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~  267 (480)
                      +.-+  ...+---...+.          ..   .+..+.+=++|.|+||.|.+-.     .+++.-+..+|-|-||-...
T Consensus       116 f~s~--~y~w~Gda~~~~----------~~---~~~~~~IElVTSPNNPDG~lr~-----~V~~g~~~k~I~D~AYYWPh  175 (363)
T PF04864_consen  116 FDSR--LYKWAGDASNFK----------NS---DNPSPYIELVTSPNNPDGQLRE-----AVLNGSSGKVIHDLAYYWPH  175 (363)
T ss_dssp             T-BT--TEEEEEECCCGT----------T----S-CCGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-STT
T ss_pred             cccc--CccccccHHhhc----------cC---CCCCCeEEEEeCCCCCcccccc-----hhcCCCCcceeeeeeeeccc
Confidence            6432  222222111121          11   1123677799999999998631     11344566789999987766


Q ss_pred             c-ccccccCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCC
Q psy12303        268 L-LSKKYRHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGR  345 (480)
Q Consensus       268 ~-~~~~~~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r  345 (480)
                      + +++. ..       +-|++.++.+|.=| ++...|+-++||++......    .|+...             ++..+|
T Consensus       176 yTpI~~-~a-------D~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~----~y~~ln-------------TiGvS~  230 (363)
T PF04864_consen  176 YTPITA-PA-------DHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMT----KYMELN-------------TIGVSR  230 (363)
T ss_dssp             TS---S--B---------SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHH----HHHHHH-------------CSS--H
T ss_pred             ccccCC-CC-------CCceEEEEEecccCccccccceeeecCHHHHHHHH----HHHHHh-------------cccCcH
Confidence            5 2221 22       56899999999866 34568999999997655432    222111             000111


Q ss_pred             C--CCchHHHHHHH-HhcHH-----HHHHHHHHHHHHHHHHHHHHhcCCCCeEEec-CCcee-----------EEEE-Ee
Q psy12303        346 H--NDIFKLWLQWR-AKGDE-----GFEKQIDRLMELAEYMVKKIKSMPDKFYLIL-EPEMV-----------NVSF-WY  404 (480)
Q Consensus       346 ~--~~~l~~~~~l~-~~g~~-----~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~-~~~~~-----------~v~f-~~  404 (480)
                      -  .+++++.-.+. .++.+     -+.--.+.+.+.=+.|.+.+.+ ...|.+-. +|+.+           .+.+ ++
T Consensus       231 dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~-S~rFSLq~~~~~yC~ff~~~~~psPafAWlkC  309 (363)
T PF04864_consen  231 DSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSA-SKRFSLQKFSPQYCNFFKRVREPSPAFAWLKC  309 (363)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCC-SSSEEE---SCEEETTTTCEEE---SEEEEEE
T ss_pred             HHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHh-cCceecCcCCchhccccccccCCCCCeEEEec
Confidence            1  13444433322 22222     1222233344445566677777 66676632 22221           1222 11


Q ss_pred             ecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        405 LPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       405 ~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      ..++                ..+....|.+.+++-.+ +...| ...++|+|.   .-+++|.+.++++|.++
T Consensus       310 e~ee----------------d~DC~~~l~~~~I~tr~-G~~fga~~ryVRlSm---l~~~d~Fd~l~~rL~~l  362 (363)
T PF04864_consen  310 EREE----------------DEDCYAVLREAKIITRS-GVLFGADSRYVRLSM---LKRDDDFDQLLERLSKL  362 (363)
T ss_dssp             SSCG----------------GSSHHHHHHCTTEEEEE-GGGGTS-TTEEEEES---SS-HHHHHHHHHHHHCC
T ss_pred             CCcc----------------cccHHHHHHhCCcccCC-CCccCCCCCeEEEec---cCCHHHHHHHHHHHHhh
Confidence            1111                01344555566643333 33333 267999993   45899999999999875

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>KOG1411|consensus

Probab=97.53  E-value=0.00039  Score=64.18  Aligned_cols=283  Identities=11%  Similarity=0.042  Sum_probs=154.0

Q ss_pred             ECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHH
Q psy12303        134 LAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELER  213 (480)
Q Consensus       134 ~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~  213 (480)
                      -|-+||.|+..+..-... ++           |++ .|+++.++...+.......|+.....++.. ..+..+|.+.+-+
T Consensus       125 Q~lSGTGaLriga~Fl~~-f~-----------~~~-~I~ip~PTWgNh~~if~~ag~~~~~yrYyd-~~t~gld~~g~le  190 (427)
T KOG1411|consen  125 QTLSGTGALRVGAEFLAR-FY-----------PSR-DIYIPDPTWGNHKNIFKDAGLPVKFYRYYD-PKTRGLDFKGMLE  190 (427)
T ss_pred             EeccCcchhhHHHHHHHh-hc-----------ccc-ceeecCCcccccCccccccCcceeeeeecc-ccccccchHHHHH
Confidence            445778766655443322 21           434 899999998888888888887432223221 2345678776666


Q ss_pred             HHHHHHHCCCccEEEEeccCCCccccc---cChHHHHHHHHHcCcEEEeeccccccccc-cccccCc-ccCCCCCCc-cc
Q psy12303        214 LVLERKAKGDIPFFVNCTSGTTVLGAF---DPIEEIADICQKYNMWLHVDAAWGGGLLL-SKKYRHP-RLTGIERAD-SV  287 (480)
Q Consensus       214 ~i~~~~~~~~~~~~v~~~~~~~~~G~~---~~l~~I~~i~~~~~~~l~vD~a~~~~~~~-~~~~~~~-~~~~~~~~D-~~  287 (480)
                      .+.+..+   .-.+++--..+||||.=   +..++|.++.++.+..-++|.||-++..- .+..... ++.--.+.. .+
T Consensus       191 dl~~~p~---gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~l  267 (427)
T KOG1411|consen  191 DLGEAPE---GSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILL  267 (427)
T ss_pred             HHhcCCC---CcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEe
Confidence            6655422   13445555667899853   33688999999999999999999988652 1111110 000001222 45


Q ss_pred             eeCccccCCCc-ccceEE--EEeCchhhHhhhcC-----CcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh
Q psy12303        288 TWNPHKLMGTL-LQCSTI--HFKQDGLLISCNQM-----SAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK  359 (480)
Q Consensus       288 ~~s~hK~~~~p-~~~g~~--~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~  359 (480)
                      +-|+-|.+|.- -..|.+  ++.+.+...+..++     .+-|-..              -+.+.|-.+.+---..|+.-
T Consensus       268 aQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnP--------------P~hGArIv~~Il~d~~l~~~  333 (427)
T KOG1411|consen  268 AQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNP--------------PLHGARIVATILSDPDLKNQ  333 (427)
T ss_pred             ehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCC--------------CccchhhhhhccCChHHHHH
Confidence            66888988742 123433  33444333322211     2222111              01122211111000111111


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEE-e--cCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcc
Q psy12303        360 GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYL-I--LEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAG  436 (480)
Q Consensus       360 g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~-~--~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g  436 (480)
                      -......+.+|.+.++..|.+.|.+  +|-.. +  -..+.++|||...                   +.+-.+.|..+.
T Consensus       334 W~~evk~MadRi~~mR~~L~d~L~~--~gs~~~W~hI~~QIGMF~fTgl-------------------~peQv~~l~ke~  392 (427)
T KOG1411|consen  334 WLGEVKGMADRIISMRQQLFDALEK--EGSPGNWSHITKQIGMFCFTGL-------------------NPEQVDWLTKEY  392 (427)
T ss_pred             HHHHHHHHHHhhhhhHHHHhHHhhc--CCCCccHHHHHHhhheeeecCC-------------------CHHHHHHHHhhh
Confidence            1234567788999999999999988  44332 0  0256789998532                   234456666665


Q ss_pred             cEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        437 TMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       437 ~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .++.+.   +     =|+|+.  ..+...+.++.++|.++.+
T Consensus       393 ~iYmT~---d-----GRiS~a--G~ss~nV~yLa~aih~vtk  424 (427)
T KOG1411|consen  393 HIYLTK---D-----GRISMA--GLSSSNVPYLADAIHAVTK  424 (427)
T ss_pred             eeeecc---C-----ceEeec--cccccCCcccchhhHhHhc
Confidence            444443   1     256632  2355667888888877654

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=96.33  E-value=0.0092  Score=50.22  Aligned_cols=61  Identities=10%  Similarity=0.173  Sum_probs=49.3

Q ss_pred             hhcChhhHHHHHHHHHHHHHHhC----CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCch
Q psy12303        104 YEIAPVFILMETVVLEKMRQIIG----WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHY  179 (480)
Q Consensus       104 ~~~~~~~~~~e~~~~~~la~~~g----~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~  179 (480)
                      |....+..++.+++++++.+.+|    ++++++++|+|++.|+..++.++.+              ||+ .|+++.+.|+
T Consensus        88 Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~d--------------pGD-~VlVp~P~Y~  152 (153)
T PLN02994         88 FQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIAD--------------PGD-AFLVPTPYYA  152 (153)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcC--------------CCC-EEEEeCCCCC
Confidence            44445667889999999999988    3567899999999999999988876              556 7888877764

>KOG0352|consensus

Probab=88.44  E-value=2.9  Score=40.61  Aligned_cols=71  Identities=17%  Similarity=0.150  Sum_probs=42.7

Q ss_pred             EeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccc-cChHHHHHHHHHcC--cEEEeeccccccccccc
Q psy12303        197 EVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAF-DPIEEIADICQKYN--MWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       197 ~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~-~~l~~I~~i~~~~~--~~l~vD~a~~~~~~~~~  271 (480)
                      .||++. +..++..+=.+.+-+..+....++++.+|    |.|+- +-.+.+..-..+++  .+++||+||....+-.+
T Consensus        85 KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYIT----PE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHD  159 (641)
T KOG0352|consen   85 KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYIT----PEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHD  159 (641)
T ss_pred             CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEc----hhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccc
Confidence            456554 55666666556665555555668888884    44443 23444444333444  48999999988766443

>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]

Probab=88.03  E-value=9.8  Score=35.50  Aligned_cols=140  Identities=24%  Similarity=0.259  Sum_probs=81.4

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCc-h---hHH
Q psy12303        107 APVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH-Y---SVR  182 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h-~---s~~  182 (480)
                      ......+|.-+-+.+.+     ....++|-||..||..-..++..++      .|.     +.+.++....- |   ...
T Consensus        46 GNK~RKLefll~eal~~-----g~dTlvT~GgiQSNh~r~tAavA~~------lGl-----~~v~ile~~~~~y~~ngn~  109 (323)
T COG2515          46 GNKIRKLEFLLGEALRK-----GADTLVTYGGIQSNHVRQTAAVAAK------LGL-----KCVLILENIEANYLLNGNL  109 (323)
T ss_pred             ccHHHHHHHHHhhhhhc-----CCcEEEEecccchhHHHHHHHHHHh------cCC-----cEEEEEeccccccccccch
Confidence            34445666554444432     2347999999999998887776642      454     44555543330 0   022


Q ss_pred             HHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccc---ccChHHHHHHHHH-cCcEEE
Q psy12303        183 SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGA---FDPIEEIADICQK-YNMWLH  258 (480)
Q Consensus       183 ~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~---~~~l~~I~~i~~~-~~~~l~  258 (480)
                      .-...+|.   .++.++...+..++. .+++..++.+++|.+|. |+...++++.|.   +.-..||.+-+++ ..+-.+
T Consensus       110 Ll~~l~G~---~~~~~~~~~d~~~~~-~~~~~~e~~~~~g~kpy-vIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~v  184 (323)
T COG2515         110 LLSKLMGA---EVRAVDAGTDIGINA-SAEELAEEVRKQGGKPY-VIPEGGSSPLGALGYVRLALEIAEQAEQLLKFDSV  184 (323)
T ss_pred             hhhhhcCc---eEEEecCCCChhhch-hhHHHHHHHHhcCCCCc-EeccCCcCccccccHHHHHHHHHHHHhhccCCCEE
Confidence            33344555   677776555543332 24444445555677774 555566888554   4556788888887 456666


Q ss_pred             eeccccccc
Q psy12303        259 VDAAWGGGL  267 (480)
Q Consensus       259 vD~a~~~~~  267 (480)
                      |.++-+++.
T Consensus       185 Vva~gs~gT  193 (323)
T COG2515         185 VVAPGSGGT  193 (323)
T ss_pred             EEeCCCcch
Confidence            766655554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	480
3vp6_A	511	Structural Characterization Of Glutamic Acid Decarb		1e-167
2okj_A	504	The X-Ray Crystal Structure Of The 67kda Isoform Of		1e-166
2okk_A	497	The X-Ray Crystal Structure Of The 65kda Isoform Of		1e-157
2jis_A	515	Human Cysteine Sulfinic Acid Decarboxylase (Csad) I		1e-137
3rbf_A	480	Crystal Structure Of Human Aromatic L-Amino Acid De		1e-32
3rch_A	480	Crystal Structure Of Human Aromatic L-Amino Acid De		4e-32
3k40_A	475	Crystal Structure Of Drosophila 3,4-Dihydroxyphenyl		6e-30
1js3_A	486	Crystal Structure Of Dopa Decarboxylase In Complex		3e-29
2qma_A	497	Crystal Structure Of Glutamate Decarboxylase Domain		3e-27
4e1o_A	481	Human Histidine Decarboxylase Complex With Histidin		1e-25
3f9t_A	397	Crystal Structure Of L-tyrosine Decarboxylase Mfna		3e-07

>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid Decarboxylase; Insights Into The Mechanism Of Autoinactivation Length = 511

Iteration: 1
 Score =  585 bits (1507), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 275/485 (56%), Positives = 367/485 (75%), Gaps = 11/485 (2%)
Query: 4   TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEM-KAM--LDLDIPEKGLPLQKLIDDC 60
           T  FL ++V+ILLNY++++ DR+ KVL F+HP ++ + M   +L++ +    L++++ DC
Sbjct: 24  TVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 83
Query: 61  FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
             TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct: 84  RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 143
Query: 121 MRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
           MR+I+GW  + GD I +PGG+ISN+Y+ +AAR+K FP  K KG++A+  +LV+FTS+Q H
Sbjct: 144 MREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP-KLVLFTSEQSH 202
Query: 179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
           YS++   A  G GTDN + +  ++RG++IP++ E  +LE K KG +PF+VN T+GTTV G
Sbjct: 203 YSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYG 262
Query: 239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
           AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L GIERA+SVTWNPH +MG L
Sbjct: 263 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLNGIERANSVTWNPHXMMGVL 321
Query: 299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
           LQCS I  K+ G+L  CNQM A YLF QDK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct: 322 LQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 381
Query: 359 KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPHE- 415
           KG  GFE QI++ +ELAEY+  KIK+  ++F ++   EPE  NV FWY+P  +R +P   
Sbjct: 382 KGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSP 440
Query: 416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR 475
           +R   L ++ P +K  MM++GT MVGYQP  D  NFFR +IS+ A T+ DIDFL+ E++R
Sbjct: 441 QRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 500
Query: 476 LGHDL 480
           LG DL
Sbjct: 501 LGQDL 505

>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of Glutamic Acid Decarboxylase (Gad67) Length = 504

Iteration: 1
 Score =  580 bits (1495), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 274/485 (56%), Positives = 366/485 (75%), Gaps = 11/485 (2%)
Query: 4   TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEM-KAM--LDLDIPEKGLPLQKLIDDC 60
           T  FL ++V+ILLNY++++ DR+ KVL F+HP ++ + M   +L++ +    L++++ DC
Sbjct: 21  TVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 80
Query: 61  FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
             TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct: 81  RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 140
Query: 121 MRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
           MR+I+GW  + GD I +PGG+ISN+Y+ +AAR+K FP  K KG++A+  +LV+FTS+Q H
Sbjct: 141 MREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP-KLVLFTSEQSH 199
Query: 179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
           YS++   A  G GTDN + +  ++RG++IP++ E  +LE K KG +PF+VN T+GTTV G
Sbjct: 200 YSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYG 259
Query: 239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
           AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L GIERA+SVTWNPH +MG L
Sbjct: 260 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLNGIERANSVTWNPHXMMGVL 318
Query: 299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
           LQCS I  K+ G+L  CNQM A YLF  DK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct: 319 LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 378
Query: 359 KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPHE- 415
           KG  GFE QI++ +ELAEY+  KIK+  ++F ++   EPE  NV FWY+P  +R +P   
Sbjct: 379 KGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSP 437
Query: 416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR 475
           +R   L ++ P +K  MM++GT MVGYQP  D  NFFR +IS+ A T+ DIDFL+ E++R
Sbjct: 438 QRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 497
Query: 476 LGHDL 480
           LG DL
Sbjct: 498 LGQDL 502

>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of Glutamic Acid Decarboxylase (Gad65) Length = 497

Iteration: 1
 Score =  551 bits (1420), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 255/481 (53%), Positives = 361/481 (75%), Gaps = 8/481 (1%)
Query: 4   TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTT 63
           T  FL+ ++NILL Y+ +S DR+ KV+ F++P E+    + ++ ++   L++++  C TT
Sbjct: 20  TLAFLQDVMNILLQYVVKSFDRSTKVIDFHYPNELLQEYNWELADQPQNLEEILMHCQTT 79
Query: 64  LKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQ 123
           LKY ++TGHP + NQLS GLD+V +A +WL +TANTNMFTYEIAPVF+L+E V L+KMR+
Sbjct: 80  LKYAIKTGHPRYFNQLSTGLDMVGLAADWLTSTANTNMFTYEIAPVFVLLEYVTLKKMRE 139
Query: 124 IIGWQGG--DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV 181
           IIGW GG  D I +PGG+ISN+YA + AR KMFP  KEKG++A+  +L+ FTS+  H+S+
Sbjct: 140 IIGWPGGSGDGIFSPGGAISNMYAMMIARFKMFPEVKEKGMAALP-RLIAFTSEHSHFSL 198
Query: 182 RSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD 241
           +  AA  G+GTD+ + +  D+RG++IPS+LER +LE K KG +PF V+ T+GTTV GAFD
Sbjct: 199 KKGAAALGIGTDSVILIKCDERGKMIPSDLERRILEAKQKGFVPFLVSATAGTTVYGAFD 258
Query: 242 PIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQC 301
           P+  +ADIC+KY +W+HVDAAWGGGLL+S+K++  +L+G+ERA+SVTWNPH +MG  LQC
Sbjct: 259 PLLAVADICKKYKIWMHVDAAWGGGLLMSRKHKW-KLSGVERANSVTWNPHXMMGVPLQC 317
Query: 302 STIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGD 361
           S +  +++GL+ +CNQM A YLF QDK YD+ YDTGDK +QCGRH D+FKLWL WRAKG 
Sbjct: 318 SALLVREEGLMQNCNQMHASYLFQQDKHYDLSYDTGDKALQCGRHVDVFKLWLMWRAKGT 377
Query: 362 EGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE--PEMVNVSFWYLPTRVRNMP-HEKRL 418
            GFE  +D+ +ELAEY+   IK+  + + ++ +  P+  NV FWY+P  +R +  +E+R+
Sbjct: 378 TGFEAHVDKCLELAEYLYNIIKNR-EGYEMVFDGKPQHTNVCFWYIPPSLRTLEDNEERM 436
Query: 419 NILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH 478
           + L ++ P++K RMM+ GT MV YQPL D  NFFR +IS+ A T  DIDFL+ E++RLG 
Sbjct: 437 SRLSKVAPVIKARMMEYGTTMVSYQPLGDKVNFFRMVISNPAATHQDIDFLIEEIERLGQ 496
Query: 479 D 479
           D
Sbjct: 497 D 497

>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In Complex With Plp. Length = 515

Iteration: 1
 Score =  484 bits (1247), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 229/485 (47%), Positives = 333/485 (68%), Gaps = 14/485 (2%)
Query: 3   TTETFLKQLVNILLN-YIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCF 61
             E  L+ +  ++++  I++    ++KV  +  P E+K +LDL++  +G   +++++ C 
Sbjct: 38  AVEALLRAVFGVVVDEAIQKGTSVSQKVCEWKEPEELKQLLDLELRSQGESQKQILERCR 97
Query: 62  TTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKM 121
             ++Y V+TGHP F NQL  GLD  ++AG  +  + NT+ +TYEIAPVF+LME  VL K+
Sbjct: 98  AVIRYSVKTGHPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKL 157
Query: 122 RQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV 181
           R ++GW  GD I  PGGSISN+YA   AR++ +P  K++GL  +   L +FTS +CHYS+
Sbjct: 158 RALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLP-PLALFTSKECHYSI 216
Query: 182 RSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD 241
           +  AA  GLGTD+   V +D+RG+++P +LER +   +A+G +PF V+ TSGTTVLGAFD
Sbjct: 217 QKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFD 276
Query: 242 PIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQC 301
           P+E IAD+CQ++ +WLHVDAAWGG +LLS+ +RH  L GI+RADSV WNPHKL+   LQC
Sbjct: 277 PLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRH-LLDGIQRADSVAWNPHKLLAAGLQC 335
Query: 302 STIHFKQ-DGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG 360
           S +  +    LL  C+   A YLF QDK YDV  DTGDKV+QCGR  D  KLWL W+A+G
Sbjct: 336 SALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG 395
Query: 361 DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMP-----HE 415
           D+G E++ID+   LA Y+V+++K   + F L++EPE VNV FW++P  +R        HE
Sbjct: 396 DQGLERRIDQAFVLARYLVEEMKKR-EGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHE 454
Query: 416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR 475
           +    L ++ P+LK RM++ G+MM+GYQP     NFFR +++++A+T  D+DFLL E++R
Sbjct: 455 R----LSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELER 510
Query: 476 LGHDL 480
           LG DL
Sbjct: 511 LGQDL 515

>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Apo Form Length = 480

Iteration: 1
 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 183/401 (45%), Gaps = 23/401 (5%)
Query: 9   KQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQV 68
           K++V+ + NY++    R  +V     P  ++ ++    P++    + +I+D    +   V
Sbjct: 11  KEMVDYVANYMEGIEGR--QVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVEKIIMPGV 68
Query: 69  RTGH-PMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQII-- 125
              H P F           +M  + L        F++  +P    +ETV+++ + +++  
Sbjct: 69  THWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLEL 128
Query: 126 --------GWQGGDSILAPGGSISNLYAFLAAR----HKMFPTYKEKGLSAIKGQLVMFT 173
                     +GG  ++    S + L A LAAR    H++     E   +AI  +LV ++
Sbjct: 129 PKAFLNEKAGEGG-GVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLVAYS 187
Query: 174 SDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSG 233
           SDQ H SV     + G+       +PSD    +  S L+  +   KA G IPFF+  T G
Sbjct: 188 SDQAHSSVERAGLIGGVKLK---AIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLG 244
Query: 234 TTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHK 293
           TT   +FD + E+  IC K ++WLHVDAA+ G   +  ++RH  L G+E ADS  +NPHK
Sbjct: 245 TTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRH-LLNGVEFADSFNFNPHK 303
Query: 294 LMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLW 353
            +     CS +  K+   L    ++   YL    +   +  D     I  GR     K+W
Sbjct: 304 WLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMW 363
Query: 354 LQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE 394
             +R  G +G +  I + ++L+      ++  P +F + +E
Sbjct: 364 FVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDP-RFEICVE 403

>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Open Conformation With Llp And Plp Bound To Chain-A And Chain- B Respectively Length = 480

Iteration: 1
 Score =  135 bits (341), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 182/401 (45%), Gaps = 23/401 (5%)
Query: 9   KQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQV 68
           K++V+ + NY++    R  +V     P  ++ ++    P++    + +I+D    +   V
Sbjct: 11  KEMVDYVANYMEGIEGR--QVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVEKIIMPGV 68
Query: 69  RTGH-PMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQII-- 125
              H P F           +M  + L        F++  +P    +ETV+++ + +++  
Sbjct: 69  THWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLEL 128
Query: 126 --------GWQGGDSILAPGGSISNLYAFLAAR----HKMFPTYKEKGLSAIKGQLVMFT 173
                     +GG  ++    S + L A LAAR    H++     E   +AI  +LV ++
Sbjct: 129 PKAFLNEKAGEGG-GVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLVAYS 187
Query: 174 SDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSG 233
           SDQ H SV     + G+       +PSD    +  S L+  +   KA G IPFF+  T G
Sbjct: 188 SDQAHSSVERAGLIGGVKLK---AIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLG 244
Query: 234 TTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHK 293
           TT   +FD + E+  IC K ++WLHVDAA+ G   +  ++RH  L G+E ADS  +NPH 
Sbjct: 245 TTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRH-LLNGVEFADSFNFNPHX 303
Query: 294 LMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLW 353
            +     CS +  K+   L    ++   YL    +   +  D     I  GR     K+W
Sbjct: 304 WLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMW 363
Query: 354 LQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE 394
             +R  G +G +  I + ++L+      ++  P +F + +E
Sbjct: 364 FVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDP-RFEICVE 403

>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine Decarboxylase Length = 475

Iteration: 1
 Score =  128 bits (322), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 182/432 (42%), Gaps = 24/432 (5%)
Query: 7   FLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKY 66
           F K +V+ +  Y++  N R  +VL    P  +K ++    PEK    Q ++ D    +  
Sbjct: 9   FAKTMVDFIAEYLE--NIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIMP 66
Query: 67  QVRTGH-PMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQII 125
            V   H P F           ++  + L        FT+  +P    +E V+++ + +++
Sbjct: 67  GVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKML 126
Query: 126 ---------GWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLS----AIKGQLVMF 172
                        G  ++    S S L A L A+ K     KE         I G+LV +
Sbjct: 127 ELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGY 186
Query: 173 TSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTS 232
            SDQ H SV     + G+   +       +  R+  + LE+ + +  A+G IPF+   T 
Sbjct: 187 CSDQAHSSVERAGLLGGVKLRSV----QSENHRMRGAALEKAIEQDVAEGLIPFYAVVTL 242
Query: 233 GTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPH 292
           GTT   AFD ++E   +  K+N+W+HVDAA+ G   +  +YRH  + GIE ADS  +NPH
Sbjct: 243 GTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRH-LMKGIESADSFNFNPH 301
Query: 293 KLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL 352
             M     CS +  K    ++  N  + + L+++  +     D     I  GR     KL
Sbjct: 302 XWMLVNFDCSAMWLKDPSWVV--NAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKL 359
Query: 353 WLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNM 412
           W   R  G E  +  I R    A+     +     +F L  E  M  V F    +  RN 
Sbjct: 360 WFVLRLYGVENLQAHIRRHCNFAK-QFGDLCVADSRFELAAEINMGLVCFRLKGSNERNE 418
Query: 413 PHEKRLNILGEI 424
              KR+N  G I
Sbjct: 419 ALLKRINGRGHI 430

>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With The Inhibitor Carbidopa Length = 486

Iteration: 1
 Score =  126 bits (316), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 173/381 (45%), Gaps = 20/381 (5%)
Query: 9   KQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQV 68
           K++V+ + +Y++    R  +V     P  ++ ++    P++    + ++ D    +   V
Sbjct: 11  KEMVDYMADYLEGIEGR--QVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGV 68
Query: 69  RTGH-PMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLE---KMRQI 124
              H P F           +M  + L        F++  +P    +ETV+++   KM Q+
Sbjct: 69  THWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQL 128
Query: 125 ------IGWQGGDSILAPGGSISNLYAFLAARHKMFPTYK--EKGLS--AIKGQLVMFTS 174
                      G  ++    S + L A LAAR K+    +    GL+  A+  +LV + S
Sbjct: 129 PEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYAS 188
Query: 175 DQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGT 234
           DQ H SV     + G+       +PSD +  +  S L+  +   KA G IPFFV  T GT
Sbjct: 189 DQAHSSVERAGLIGGVKLK---AIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGT 245
Query: 235 TVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKL 294
           T   +FD + E+  IC + ++WLHVDAA+ G   +  ++RH  L G+E ADS  +NPHK 
Sbjct: 246 TSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRH-LLNGVEFADSFNFNPHKW 304
Query: 295 MGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWL 354
           +     CS +  K+   L    ++   YL    +   +  D     +  GR     K+W 
Sbjct: 305 LLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWF 364
Query: 355 QWRAKGDEGFEKQIDRLMELA 375
            +R  G +G +  I + ++L+
Sbjct: 365 VFRMYGVKGLQAYIRKHVQLS 385

>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of Diaminobutyrate-Pyruvate Transaminase And L-2,4-Diaminobutyrate Decarboxylase From Vibrio Parahaemolyticus Length = 497

Iteration: 1
 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 123/502 (24%), Positives = 220/502 (43%), Gaps = 51/502 (10%)
Query: 1   MHTTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLD----LDIPEKGLPLQKL 56
           +HT E    +  ++  +         E+V   Y   + KA+ D    +D+  K  PL+ +
Sbjct: 24  IHTGELGSAEFASVXSHTTSAXKSVFEQVNAPYSGXDPKALEDAINAVDLDNKNAPLKSV 83
Query: 57  IDDCFTTL-KYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMET 115
           IDD    + K  + T HP  +  L       ++A E  IA  N +  +++ A     +E 
Sbjct: 84  IDDVAELVAKNAIFTQHPDCIAHLHTPPLXPAVAAEAXIAALNQSXDSWDQASSATYVE- 142
Query: 116 VVLEKMRQIIGW--------QGGDSILAPGGSISNLYAFLAARHKMFP-----TYKEKGL 162
                 ++++ W        +  D I   GG+ SN      AR  +       + ++ GL
Sbjct: 143 ------QKVVNWLCDKYDLSEKADGIFTSGGTQSNQXGLXLARDWIADKLSGHSIQKLGL 196
Query: 163 SAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKG 222
                +L +  S + H++V+  A+  GLG      V ++  G    ++L+ ++ + KA+G
Sbjct: 197 PDYADKLRIVCSKKSHFTVQKSASWXGLGEKAVXTVDANADGTXDITKLDEVIAQAKAEG 256
Query: 223 DIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIE 282
            IPF +  T+GTT  GA D ++ IAD   K++ W HVD A+GG L+LS      RL G+E
Sbjct: 257 LIPFAIVGTAGTTDHGAIDDLDFIADXAVKHDXWXHVDGAYGGALILSS--HKSRLKGVE 314
Query: 283 RADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDT----GD 338
           RA S++ + HKL    + C        G L+  ++ + ++L       +  +D      D
Sbjct: 315 RAHSISVDFHKLFYQTISC--------GALLVNDKSNFKFLLHHADYLNREHDELPNLVD 366
Query: 339 KVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMV 398
           K I   +  D  K++   +  G +      D L+     +   I++  D+F L+ EP + 
Sbjct: 367 KSIATTKRFDALKVFXTXQNVGPKALGDXYDHLLAQTLEVADXIRTN-DQFELLAEPSLS 425
Query: 399 NVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISS 458
            V F           HE     L E+   L+   +  G  ++G + + D     +  I +
Sbjct: 426 TVLF--------RATHETA--DLDELNKALRLEALTRGIAVLG-ETIVDGKTALKFTILN 474
Query: 459 AAVTEGDIDFLLTEMDRLGHDL 480
             +T  D + LL++++ L  +L
Sbjct: 475 PCLTTSDFESLLSKINXLAVEL 496

>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine Methyl Ester (Hme) Length = 481

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 167/394 (42%), Gaps = 25/394 (6%)
Query: 9   KQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQV 68
           +++V+ +  Y+  S  R  +V     P  ++A L    PE       +  D    +   V
Sbjct: 16  REMVDYICQYL--STVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGV 73
Query: 69  RTGHPMFMNQLSCGLDV-VSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW 127
                  M+     L    S+ G+ L    N   FT+  +P    +E  V++ + +++G 
Sbjct: 74  VHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGL 133
Query: 128 -----------QGGDSILAPGGSISNLYAFLAARH----KMFPTYKEKGLSAIKGQLVMF 172
                      QGG  +L    S S L A LAAR     +M  +  +   S++  +LV +
Sbjct: 134 PEHFLHHHPSSQGG-GVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAY 192
Query: 173 TSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTS 232
            SDQ H SV     +  +       +P D    L    L++ + E K +G +P FV  T 
Sbjct: 193 ASDQAHSSVEKAGLISLVKMKF---LPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATL 249
Query: 233 GTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPH 292
           GTT + AFD + E+  IC +  +WLH+DAA+ G   L  ++R   L GIE ADS T+NP 
Sbjct: 250 GTTGVCAFDXLSELGPICAREGLWLHIDAAYAGTAFLCPEFRG-FLKGIEYADSFTFNPS 308
Query: 293 KLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL 352
           K M     C+    K    L      S   ++++     V  D     I   R     KL
Sbjct: 309 KWMMVHFDCTGFWVKDKYKL--QQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKL 366
Query: 353 WLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP 386
           W   R+ G +  +  +    E+A+Y    +++ P
Sbjct: 367 WFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDP 400

>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec 4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At 2.11 A Resolution Length = 397

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 28/175 (16%)
Query: 232 SGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLL--LSKKYRHPRLT-------GIE 282
           +GTT LG  D IEE++ I ++ N+++HVDAA+GG ++  L  KY+   +        G+ 
Sbjct: 179 AGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGV- 237
Query: 283 RADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYL--FMQDKLYDVRYDTGDKV 340
             DS+T +PHK     +    I FK  G     + + A YL    Q  +   R   G   
Sbjct: 238 --DSITIDPHKXGHCPIPSGGILFKDIGYKRYLD-VDAPYLTETRQATILGTRVGFGGAC 294
Query: 341 IQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP 395
                       +   R  G EG  K ++   E   Y+ KK+K   + F  ++EP
Sbjct: 295 T-----------YAVLRYLGREGQRKIVNECXENTLYLYKKLKE--NNFKPVIEP 336

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	480
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	0.0
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	0.0
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	0.0
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	1e-161
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	1e-159
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	1e-158
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	2e-47
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	2e-46
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	3e-44
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	7e-40
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	1e-35
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	5e-26
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	2e-10
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	5e-10
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	4e-09
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	1e-08
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	3e-07
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	5e-07
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	1e-06
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	2e-06
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504

 Score =  594 bits (1533), Expect = 0.0
 Identities = 273/484 (56%), Positives = 363/484 (75%), Gaps = 9/484 (1%)

Query: 4   TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAML---DLDIPEKGLPLQKLIDDC 60
           T  FL ++V+ILLNY++++ DR+ KVL F+HP ++   +   +L++ +    L++++ DC
Sbjct: 21  TVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 80

Query: 61  FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
             TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct: 81  RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 140

Query: 121 MRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
           MR+I+GW  + GD I +PGG+ISN+Y+ +AAR+K FP  K KG++A+  +LV+FTS+Q H
Sbjct: 141 MREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAV-PKLVLFTSEQSH 199

Query: 179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
           YS++   A  G GTDN + +  ++RG++IP++ E  +LE K KG +PF+VN T+GTTV G
Sbjct: 200 YSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYG 259

Query: 239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
           AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L GIERA+SVTWNPHK+MG L
Sbjct: 260 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLNGIERANSVTWNPHKMMGVL 318

Query: 299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
           LQCS I  K+ G+L  CNQM A YLF  DK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct: 319 LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 378

Query: 359 KGDEGFEKQIDRLMELAEYMVKKIKSMPD-KFYLILEPEMVNVSFWYLPTRVRNMPH-EK 416
           KG  GFE QI++ +ELAEY+  KIK+  + +     EPE  NV FWY+P  +R +P   +
Sbjct: 379 KGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQ 438

Query: 417 RLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL 476
           R   L ++ P +K  MM++GT MVGYQP  D  NFFR +IS+ A T+ DIDFL+ E++RL
Sbjct: 439 RREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERL 498

Query: 477 GHDL 480
           G DL
Sbjct: 499 GQDL 502

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515

 Score =  592 bits (1527), Expect = 0.0
 Identities = 226/481 (46%), Positives = 328/481 (68%), Gaps = 6/481 (1%)

Query: 3   TTETFLKQLVNILLNYI-KESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCF 61
             E  L+ +  ++++   ++    ++KV  +  P E+K +LDL++  +G   +++++ C 
Sbjct: 38  AVEALLRAVFGVVVDEAIQKGTSVSQKVCEWKEPEELKQLLDLELRSQGESQKQILERCR 97

Query: 62  TTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKM 121
             ++Y V+TGHP F NQL  GLD  ++AG  +  + NT+ +TYEIAPVF+LME  VL K+
Sbjct: 98  AVIRYSVKTGHPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKL 157

Query: 122 RQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV 181
           R ++GW  GD I  PGGSISN+YA   AR++ +P  K++GL  +   L +FTS +CHYS+
Sbjct: 158 RALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTL-PPLALFTSKECHYSI 216

Query: 182 RSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD 241
           +  AA  GLGTD+   V +D+RG+++P +LER +   +A+G +PF V+ TSGTTVLGAFD
Sbjct: 217 QKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFD 276

Query: 242 PIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQC 301
           P+E IAD+CQ++ +WLHVDAAWGG +LLS+ +RH  L GI+RADSV WNPHKL+   LQC
Sbjct: 277 PLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRH-LLDGIQRADSVAWNPHKLLAAGLQC 335

Query: 302 STIHFKQ-DGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG 360
           S +  +    LL  C+   A YLF QDK YDV  DTGDKV+QCGR  D  KLWL W+A+G
Sbjct: 336 SALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG 395

Query: 361 DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPH-EKRLN 419
           D+G E++ID+   LA Y+V+++K     F L++EPE VNV FW++P  +R          
Sbjct: 396 DQGLERRIDQAFVLARYLVEEMKKREG-FELVMEPEFVNVCFWFVPPSLRGKQESPDYHE 454

Query: 420 ILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD 479
            L ++ P+LK RM++ G+MM+GYQP     NFFR +++++A+T  D+DFLL E++RLG D
Sbjct: 455 RLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514

Query: 480 L 480
           L
Sbjct: 515 L 515

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497

 Score =  538 bits (1387), Expect = 0.0
 Identities = 114/481 (23%), Positives = 216/481 (44%), Gaps = 26/481 (5%)

Query: 8   LKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLD-LDIPEKGLPLQKLIDDCFTT-LK 65
              +++   + +K   ++         P  ++  ++ +D+  K  PL+ +IDD      K
Sbjct: 34  FASVMSHTTSAMKSVFEQVNAPYSGMDPKALEDAINAVDLDNKNAPLKSVIDDVAELVAK 93

Query: 66  YQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQII 125
             + T HP  +  L     + ++A E +IA  N +M +++ A     +E  V+  +    
Sbjct: 94  NAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKY 153

Query: 126 GW-QGGDSILAPGGSISNLYAFLAARHKMFPTYKEK-----GLSAIKGQLVMFTSDQCHY 179
              +  D I   GG+ SN    + AR  +            GL     +L +  S + H+
Sbjct: 154 DLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHF 213

Query: 180 SVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGA 239
           +V+  A+  GLG    + V ++  G +  ++L+ ++ + KA+G IPF +  T+GTT  GA
Sbjct: 214 TVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGA 273

Query: 240 FDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL 299
            D ++ IAD+  K++MW+HVD A+GG L+LS  ++  RL G+ERA S++ + HKL    +
Sbjct: 274 IDDLDFIADMAVKHDMWMHVDGAYGGALILS-SHKS-RLKGVERAHSISVDFHKLFYQTI 331

Query: 300 QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK 359
            C  +               A+YL   ++ +D   +  DK I   +  D  K+++  +  
Sbjct: 332 SCGALLVNDKSNFKFLLH-HADYL---NREHDELPNLVDKSIATTKRFDALKVFMTMQNV 387

Query: 360 GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLN 419
           G +      D L+     +   I++    F L+ EP +  V F               L+
Sbjct: 388 GPKALGDMYDHLLAQTLEVADMIRTNDQ-FELLAEPSLSTVLFRATHE-------TADLD 439

Query: 420 ILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD 479
              E+   L+   +  G  ++G   ++      +  I +  +T  D + LL++++ L  +
Sbjct: 440 ---ELNKALRLEALTRGIAVLGETIVDG-KTALKFTILNPCLTTSDFESLLSKINMLAVE 495

Query: 480 L 480
           L
Sbjct: 496 L 496

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481

 Score =  465 bits (1198), Expect = e-161
 Identities = 111/491 (22%), Positives = 184/491 (37%), Gaps = 39/491 (7%)

Query: 5   ETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTL 64
               +++V+ +  Y+     R  +V     P  ++A L    PE       +  D    +
Sbjct: 12  RERGREMVDYICQYLS--TVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERII 69

Query: 65  -KYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQ 123
               V    P             S+ G+ L    N   FT+  +P    +E  V++ + +
Sbjct: 70  MPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAK 129

Query: 124 IIGW----------QGGDSILAPGGSISNLYAFLAARHKMFPTYKEK----GLSAIKGQL 169
           ++G             G  +L    S S L A LAAR       K        S++  +L
Sbjct: 130 MLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARL 189

Query: 170 VMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVN 229
           V + SDQ H SV     +  +       +P D    L    L++ + E K +G +P FV 
Sbjct: 190 VAYASDQAHSSVEKAGLISLV---KMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVC 246

Query: 230 CTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTW 289
            T GTT + AFD + E+  IC +  +WLH+DAA+ G   L  ++R   L GIE ADS T+
Sbjct: 247 ATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRG-FLKGIEYADSFTF 305

Query: 290 NPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI 349
           NP K M     C+    K    L     ++  YL   +      +      I   R    
Sbjct: 306 NPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDF--MHWQIPLSRRFRS 363

Query: 350 FKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRV 409
            KLW   R+ G +  +  +    E+A+Y    +++ P  F +  +  +  V F       
Sbjct: 364 VKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPS-FEIPAKRHLGLVVFRLKGP-- 420

Query: 410 RNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFL 469
                         +T  +   + +AG + +    + D     R  ++S   T  DI   
Sbjct: 421 ------------NSLTENVLKEIAKAGRLFLIPATIQDKL-IIRFTVTSQFTTRDDILRD 467

Query: 470 LTEMDRLGHDL 480
              +      +
Sbjct: 468 WNLIRDAATLI 478

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486

 Score =  458 bits (1181), Expect = e-159
 Identities = 111/488 (22%), Positives = 196/488 (40%), Gaps = 36/488 (7%)

Query: 7   FLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKY 66
             K++V+ + +Y++    R  +V     P  ++ ++    P++    + ++ D    +  
Sbjct: 9   RGKEMVDYMADYLEGIEGR--QVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMP 66

Query: 67  QVRT-GHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQII 125
            V     P F           +M  + L        F++  +P    +ETV+++ + +++
Sbjct: 67  GVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKML 126

Query: 126 GW---------QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKG----LSAIKGQLVMF 172
                        G  ++    S + L A LAAR K+    +         A+  +LV +
Sbjct: 127 QLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAY 186

Query: 173 TSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTS 232
            SDQ H SV     + G+       +PSD +  +  S L+  +   KA G IPFFV  T 
Sbjct: 187 ASDQAHSSVERAGLIGGV---KLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATL 243

Query: 233 GTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPH 292
           GTT   +FD + E+  IC + ++WLHVDAA+ G   +  ++RH  L G+E ADS  +NPH
Sbjct: 244 GTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRH-LLNGVEFADSFNFNPH 302

Query: 293 KLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL 352
           K +     CS +  K+   L    ++   YL    +   +  D     +  GR     K+
Sbjct: 303 KWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKM 362

Query: 353 WLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNM 412
           W  +R  G +G +  I + ++L+      +   P  F +  E  +  V F    +     
Sbjct: 363 WFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPR-FEVCAEVTLGLVCFRLKGS----- 416

Query: 413 PHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTE 472
                      +   L  R+  A  + +    L       R  I S  V  G +      
Sbjct: 417 ---------DGLNEALLERINSARKIHLVPCRLRGQF-VLRFAICSRKVESGHVRLAWEH 466

Query: 473 MDRLGHDL 480
           +  L  +L
Sbjct: 467 IRGLAAEL 474

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475

 Score =  455 bits (1173), Expect = e-158
 Identities = 120/490 (24%), Positives = 196/490 (40%), Gaps = 39/490 (7%)

Query: 5   ETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTL 64
           + F K +V+ +  Y++   +R  +VL    P  +K ++    PEK    Q ++ D    +
Sbjct: 7   KDFAKTMVDFIAEYLENIRER--RVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVI 64

Query: 65  KYQVRT-GHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQ 123
              V     P F           ++  + L        FT+  +P    +E V+++ + +
Sbjct: 65  MPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGK 124

Query: 124 IIGW---------QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGL----SAIKGQLV 170
           ++             G  ++    S S L A L A+ K     KE         I G+LV
Sbjct: 125 MLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLV 184

Query: 171 MFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNC 230
            + SDQ H SV     + G+   +   V S+   R+  + LE+ + +  A+G IPF+   
Sbjct: 185 GYCSDQAHSSVERAGLLGGVKLRS---VQSE-NHRMRGAALEKAIEQDVAEGLIPFYAVV 240

Query: 231 TSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWN 290
           T GTT   AFD ++E   +  K+N+W+HVDAA+ G   +  +YRH  + GIE ADS  +N
Sbjct: 241 TLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRH-LMKGIESADSFNFN 299

Query: 291 PHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIF 350
           PHK M     CS +  K    +++   +   YL  +  +     D     I  GR     
Sbjct: 300 PHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYL--KHDMQGSAPDYRHWQIPLGRRFRAL 357

Query: 351 KLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVR 410
           KLW   R  G E  +  I R    A+       +    F L  E  M  V F    +   
Sbjct: 358 KLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSR-FELAAEINMGLVCFRLKGS--- 413

Query: 411 NMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLL 470
                       E    L  R+   G + +    + D+  F R  I S      D+++  
Sbjct: 414 -----------NERNEALLKRINGRGHIHLVPAKIKDV-YFLRMAICSRFTQSEDMEYSW 461

Query: 471 TEMDRLGHDL 480
            E+     ++
Sbjct: 462 KEVSAAADEM 471

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397

 Score =  167 bits (425), Expect = 2e-47
 Identities = 71/368 (19%), Positives = 145/368 (39%), Gaps = 38/368 (10%)

Query: 45  DIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGL--DVVSMAGEWLIATANTNMF 102
           ++ EKG+  ++++++    LK             +   +  +V+ +  + +     TN+ 
Sbjct: 4   NMQEKGVSEKEILEE----LKKYRSLDLKYEDGNIFGSMCSNVLPITRKIVDIFLETNLG 59

Query: 103 TYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGL 162
              +     L+E   +  +  ++  +     +  GG+ +NL A    ++      ++   
Sbjct: 60  DPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLS 119

Query: 163 SAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKG 222
                ++++      H+S      +  L     +  P  +   +    ++  V +    G
Sbjct: 120 KNEHPKIIV--PITAHFSFEKGREMMDLE---YIYAPIKEDYTIDEKFVKDAVEDYDVDG 174

Query: 223 DIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIE 282
                +   +GTT LG  D IEE++ I ++ N+++HVDAA+GG ++     ++ +  G+ 
Sbjct: 175 -----IIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKY-KKKGVN 228

Query: 283 R-------ADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYD 335
                    DS+T +PHK+    +    I FK D        + A YL           +
Sbjct: 229 YKFDFSLGVDSITIDPHKMGHCPIPSGGILFK-DIGYKRYLDVDAPYL----------TE 277

Query: 336 TGDKVIQCGRH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE 394
           T    I   R        +   R  G EG  K ++  ME   Y+ KK+K     F  ++E
Sbjct: 278 TRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENN--FKPVIE 335

Query: 395 PEMVNVSF 402
           P +  V+ 
Sbjct: 336 PILNIVAI 343

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514

 Score =  167 bits (425), Expect = 2e-46
 Identities = 74/476 (15%), Positives = 147/476 (30%), Gaps = 66/476 (13%)

Query: 20  KESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQL 79
             + D    +     P   +      +P  GLP  +++ +    +        P + +  
Sbjct: 45  DPTMDWLASLRSQIKPYRDRFPSHARLPRAGLPRAEILAE----IAAMGAAESPAWRDGY 100

Query: 80  ------SCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDS- 132
                       ++   E     + +N    ++ P     E  V+     ++G       
Sbjct: 101 ASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGT 160

Query: 133 ---ILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG 189
               +  GG+ S L A    R         KG++              H +    A   G
Sbjct: 161 VCGTVTSGGTESLLLAMKTYRDWA---RATKGIT----APEAVVPVSAHAAFDKAAQYFG 213

Query: 190 LGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADI 249
           +     V  P D   R   + +   +            V  ++     G  DPI EIA +
Sbjct: 214 I---KLVRTPLDADYRADVAAMREAITPN------TVVVAGSAPGYPHGVVDPIPEIAAL 264

Query: 250 CQKYNMWLHVDAAWGGGLLLSKKYRH----PRLTGIERADSVTWNPHKLMGTLLQCSTIH 305
             ++ +  HVDA  GG +L   +       P    +E   SV+ + HK        S I 
Sbjct: 265 AAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVIL 324

Query: 306 FKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGR-HNDIFKLWLQWRAKGDEGF 364
           +++  LL     ++A++                      R        W    + G+EG+
Sbjct: 325 YRRPDLLHYQYFIAADWP---------GGLYFSPTFAGSRPGALSATAWAAMLSLGEEGY 375

Query: 365 EKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEI 424
                R+++ A+ +   ++++P    ++ +P +  ++                LNI    
Sbjct: 376 LDATRRILQAADRLKAGVRAIPS-LKILGDP-LWVIAV-----------ASDELNIYQ-- 420

Query: 425 TPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL 480
              +   M   G  + G       P  F   ++      G +D  L ++      +
Sbjct: 421 ---VMEEMAGRGWRLNGLH----RPPAFHVALTLRHTEPGVVDRFLADLQDAVAQV 469

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456

 Score =  160 bits (406), Expect = 3e-44
 Identities = 48/376 (12%), Positives = 108/376 (28%), Gaps = 54/376 (14%)

Query: 107 APVFILMETVVLEKMRQIIGWQGGDS--ILAPGGSISNLYAFLAARHKMFPTYKEKGLSA 164
           A    +M  +  + +       G +   I  P  +  ++   L+A  K            
Sbjct: 125 ASGASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKK----------- 173

Query: 165 IKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDI 224
             G  V+      H S     +  G+       V    R  +   ++E  + +    G+ 
Sbjct: 174 -YGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNR 232

Query: 225 PFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH-PRLTGIER 283
           P  V  T         D I EIA IC+ Y++   ++ A+    + +  Y    +     R
Sbjct: 233 PC-VLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYA---IQNNYYLEKLKKAFKYR 288

Query: 284 ADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQC 343
            D+V  +  K + T +    ++      +   +                           
Sbjct: 289 VDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASA------------------ 330

Query: 344 GRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL----EPEMVN 399
                +    +   + G + + + +       + + + +  +  K          P    
Sbjct: 331 ---TPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASC 387

Query: 400 VSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSA 459
           +S    P  +    +  R+     I           GT    Y            + ++ 
Sbjct: 388 ISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDY----------IVMNAAI 437

Query: 460 AVTEGDIDFLLTEMDR 475
            V   DI   ++++++
Sbjct: 438 GVRTEDIVNSVSKLEK 453

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497

 Score =  149 bits (377), Expect = 7e-40
 Identities = 61/402 (15%), Positives = 122/402 (30%), Gaps = 51/402 (12%)

Query: 20  KESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMN-- 77
           KE     + +      ++ + M    +P  G+P   +I++     K      H  +    
Sbjct: 12  KEVTKVKQSIEDELIRSDSQLMNFPQLPSNGIPQDDVIEELN---KLNDLIPHTQWKEGK 68

Query: 78  ----QLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSI 133
                   G D++ +           N    ++ P    ME+ V+  + ++         
Sbjct: 69  VSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGC 128

Query: 134 --LAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG 191
                GG+ S L A L+A+         +G      +  +      H      A   G+ 
Sbjct: 129 GTTTSGGTESLLLACLSAKMYA---LHHRG----ITEPEIIAPVTAHAGFDKAAYYFGMK 181

Query: 192 TDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADIC 250
                 V  D    ++   ++++ + +          +  ++     G  D IE +  I 
Sbjct: 182 ---LRHVELDPTTYQVDLGKVKKFINKN------TVLLVGSAPNFPHGIADDIEGLGKIA 232

Query: 251 QKYNMWLHVDAAWGGGLL-----LSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIH 305
           QKY + LHVD+  G  ++        K        +    S++ + HK        S I 
Sbjct: 233 QKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIM 292

Query: 306 FKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCG-----RHNDIFKLWLQWRAKG 360
           ++   L                + Y     TG                +   W      G
Sbjct: 293 YRNSDLR-------------MHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMG 339

Query: 361 DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSF 402
           + G+ +    ++  A    K I+       ++  P    +SF
Sbjct: 340 ENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISF 381

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502

 Score =  137 bits (346), Expect = 1e-35
 Identities = 61/404 (15%), Positives = 132/404 (32%), Gaps = 44/404 (10%)

Query: 20  KESNDRNEKVLHFYHPAEMKAML-DLDIPEKGLPLQ---KLIDDCFTTLKYQVRTGHPMF 75
              ++ +  V   +    ++  L    +PE  +P +   ++I+D    L    R     F
Sbjct: 5   HAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIIND-ELMLDGNPRLNLASF 63

Query: 76  MNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILA 135
           +        +     + ++++ N N    +  PV   ++   +  +  +      ++  A
Sbjct: 64  VTT-----WMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETA 118

Query: 136 PG-----GSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL 190
            G      S + + A LA + K     K +G    K  +V              A    +
Sbjct: 119 VGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVT--GANVQVCWEKFARYFEV 176

Query: 191 GTDNCVEVPSDKRGRLI-PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADI 249
                 EV   +   ++ P +   +V E          V    G+T+ G F+ ++ + D+
Sbjct: 177 ---ELKEVKLSEGYYVMDPQQAVDMVDEN------TICVAAILGSTLNGEFEDVKLLNDL 227

Query: 250 CQKYN------MWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCST 303
             + N        +HVDAA GG +             +    S+  + HK          
Sbjct: 228 LVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGW 287

Query: 304 IHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-NDIFKLWLQWRAKGDE 362
           + ++    L         YL           D     +   +  + +   + Q    G E
Sbjct: 288 VIWRNKEDLPEELIFHINYL---------GADQPTFTLNFSKGSSQVIAQYYQLIRLGHE 338

Query: 363 GFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLP 406
           G+   ++   E    + + ++     F ++ + E V +  + L 
Sbjct: 339 GYRNVMENCRENMIVLREGLEKTER-FNIVSKDEGVPLVAFSLK 381

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Length = 452

 Score =  109 bits (273), Expect = 5e-26
 Identities = 59/375 (15%), Positives = 114/375 (30%), Gaps = 46/375 (12%)

Query: 46  IPEKGLP---LQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMF 102
            P   +      ++I+D    L    R     F     C         + +  + N N  
Sbjct: 18  FPLHEMRDDVAFQIIND-ELYLDGNARQNLATF-----CQTWDDENVHKLMDLSINKNWI 71

Query: 103 TYEIAPVFILMETVVLEKMRQIIGWQGGDSILA-----PGGSISNLYAFLAARHKMFPTY 157
             E  P    ++   +  +  +       +  A      G S + +   +A + +     
Sbjct: 72  DKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRM 131

Query: 158 KEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK-RGRLIPSELERLVL 216
           +  G    K  LV              A    +      E+P    +  + P  +     
Sbjct: 132 EAAGKPTDKPNLVCGPV---QICWHKFARYWDV---ELREIPMRPGQLFMDPKRMIEACD 185

Query: 217 ERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNM------WLHVDAAWGGGLLLS 270
           E          V  T G T  G ++  + + D   K+         +H+DAA GG L   
Sbjct: 186 EN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPF 239

Query: 271 KKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLY 330
                     + R  S++ + HK     L C  + ++ +  L      + +YL       
Sbjct: 240 VAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYL------- 292

Query: 331 DVRYDTGDKVIQCGRH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKF 389
                 G   I   R    +   + ++   G EG+ K  +   ++A Y+  +I  +   +
Sbjct: 293 --GGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGP-Y 349

Query: 390 YLIL--EPEMVNVSF 402
             I    P+    + 
Sbjct: 350 EFICTGRPDEGIPAV 364

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* Length = 450

 Score = 61.6 bits (149), Expect = 2e-10
 Identities = 44/260 (16%), Positives = 80/260 (30%), Gaps = 46/260 (17%)

Query: 134 LAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD 193
           +A G S++    FL  RHK                  +        S        G    
Sbjct: 124 MATGMSLT--LCFLTLRHKR------------PKAKYIIWPRIDQKSCFKSMVTAGFEPV 169

Query: 194 NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY 253
               V      R     +E  + E   +  I    + T+        D +EE+A IC  Y
Sbjct: 170 VIENVLEGDELRTDLKAVEAKIQELGPE-HILCLHSTTACFAP-RVPDRLEELAVICANY 227

Query: 254 NMWLHVDAAWGGGLLLSKKYRH--PRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGL 311
           ++   V+ A+G   L S K  H   +   + R D+   +  K     +  + I    +  
Sbjct: 228 DIPHVVNNAYG---LQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPF 284

Query: 312 LISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHND--IFKLWLQWRAKGDEGFEKQID 369
           +     +S  Y                     GR +      + +   + G  G+ K + 
Sbjct: 285 I---QDISKMYP--------------------GRASASPSLDVLITLLSLGCSGYRKLLK 321

Query: 370 RLMELAEYMVKKIKSMPDKF 389
              E+  Y+  ++K + +  
Sbjct: 322 ERKEMFVYLSTQLKKLAEAH 341

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* Length = 715

 Score = 60.8 bits (147), Expect = 5e-10
 Identities = 36/248 (14%), Positives = 69/248 (27%), Gaps = 43/248 (17%)

Query: 177 CHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIP-------SELERLVLERKAKGDIPFFVN 229
           CH S+     +  +          +  G L                ++       P    
Sbjct: 244 CHKSLTHLMMMSDVTP-IYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAV 302

Query: 230 CTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIER----AD 285
            T+ T     ++  + I       +  +H D+AW      S  Y         R      
Sbjct: 303 ITNSTYDGLLYN-TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVI 359

Query: 286 SVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQM-------SAEYLFMQDKLYDVRYDTGD 338
             T + HKL+    Q S IH K D    + N+        S  Y  +             
Sbjct: 360 YETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVA------------ 407

Query: 339 KVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMV 398
                    +     ++    G       I+R ++  + + +        F+ + +P+ +
Sbjct: 408 -------STETAAAMMK-GNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHI 459

Query: 399 N-VSFWYL 405
           +    W L
Sbjct: 460 DTTECWPL 467

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} Length = 755

 Score = 58.2 bits (140), Expect = 4e-09
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 7/126 (5%)

Query: 207 IPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGG 266
           +  ++    L +   G  P +   T+ T   G     +E  D+ +K +  LH D AW G 
Sbjct: 295 LQKKISESPLTKDKAGQKPSYCVVTNCT-YDGVCYNAKEAQDLLEKTSDRLHFDEAWYGY 353

Query: 267 LLLSKKYRHPRLTGIER------ADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSA 320
              +  Y        E           T + HKL+  L Q S IH ++    I+ ++ + 
Sbjct: 354 ARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQ 413

Query: 321 EYLFMQ 326
            Y+   
Sbjct: 414 AYMMHA 419

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} Length = 501

 Score = 56.3 bits (135), Expect = 1e-08
 Identities = 39/224 (17%), Positives = 71/224 (31%), Gaps = 32/224 (14%)

Query: 170 VMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVN 229
            +        S        G        V      R     +E  V E      I    +
Sbjct: 164 YIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPD-CILCIHS 222

Query: 230 CTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH--PRLTGIERADSV 287
            TS        D +EE+A IC  Y++   V+ A+G   + S K  H   +   + R D+ 
Sbjct: 223 TTSCFAP-RVPDRLEELAVICANYDIPHIVNNAYG---VQSSKCMHLIQQGARVGRIDAF 278

Query: 288 TWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN 347
             +  K     +  + I    D  +    ++S  Y                     GR +
Sbjct: 279 VQSLDKNFMVPVGGAIIAGFNDSFI---QEISKMYP--------------------GRAS 315

Query: 348 D--IFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKF 389
                 + +   + G  G++K +    E+  Y+  +IK + + +
Sbjct: 316 ASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAY 359

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 10/115 (8%)

Query: 196 VEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNM 255
           V         + P    +  +E   K         T      G    +++IA +C +Y++
Sbjct: 120 VPKTDYPDYAITPENFAQT-IEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDV 178

Query: 256 WLHVDAAWGGGLLLSKKYRHPRLTGIER-ADSVTWNPHKLMGTLLQCSTIHFKQD 309
            L V+ A+  G           ++  E  AD +  + HK M        +  K++
Sbjct: 179 PLLVNGAYAIG--------RMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE 225

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* Length = 730

 Score = 51.2 bits (122), Expect = 5e-07
 Identities = 24/120 (20%), Positives = 36/120 (30%), Gaps = 6/120 (5%)

Query: 210 ELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLL 269
           EL   V   +AK   PF +      T  G      E+         ++  D+AW G    
Sbjct: 266 ELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQF 325

Query: 270 SKKYRH------PRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYL 323
               R+        L   +    V  + HK      Q S IH K   +         ++ 
Sbjct: 326 IPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHF 385

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Length = 446

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 22/151 (14%), Positives = 41/151 (27%), Gaps = 14/151 (9%)

Query: 177 CHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCT-SGTT 235
            H SV     +      + +E                 +     K  +         G T
Sbjct: 105 VHKSVLHALDISQQ-EGHFIETHQSPLTNHYNKVNLSRLNNDGHKLVV--LTYPNYYGET 161

Query: 236 VLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLM 295
                  +EE+     + N+ + +D A G    L              AD V  + HK +
Sbjct: 162 F-----NVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQ---ADYVVQSFHKTL 213

Query: 296 GTLLQCSTIHFKQDGLLISCNQMSAEYLFMQ 326
             L   S ++  ++        +     + Q
Sbjct: 214 PALTMGSVLYIHKN--APYRENIIEYLSYFQ 242

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 42/327 (12%), Positives = 98/327 (29%), Gaps = 44/327 (13%)

Query: 172 FTSDQCHYSVRSCAAV-CGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFV-- 228
           FT+ + H        V       +   +    +G +   +L++L+ E+ A+ +I +    
Sbjct: 123 FTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAE-NIAYICLA 181

Query: 229 --NCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKK-----YRHPRLTGI 281
                +G   + +   +  + ++ + + + +  DA          K     + +  +  I
Sbjct: 182 VTVNLAGGQPV-SMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEI 240

Query: 282 ER-----ADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDT 336
                  AD  T +  K                G  +  N    + +F   K   V Y+ 
Sbjct: 241 VHEMFSYADGCTMSGKKDCLV----------NIGGFLCMND---DEMFSSAKELVVVYEG 287

Query: 337 GDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE 396
                     +          A   E  E ++ ++  L +        +      I+EP 
Sbjct: 288 MPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDK-------LKAAGVPIVEPV 340

Query: 397 MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKG--RMMQAGTMMVGYQPLND-----LP 449
             +  F        ++  ++        +  ++   R M+ G +  G   +         
Sbjct: 341 GGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKL 400

Query: 450 NFFRNIISSAAVTEGDIDFLLTEMDRL 476
              R  I     T   +D +   + +L
Sbjct: 401 ETVRLTIPRRVYTYAHMDVVADGIIKL 427

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 28/180 (15%), Positives = 63/180 (35%), Gaps = 19/180 (10%)

Query: 133 ILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGT 192
           I A  G  +    F           + K  + +      F +   H  +  C A+  + T
Sbjct: 95  IPAHQGRGAENILFPVLLKYK--QKEGKAKNPVFISNFHFDTTAAHVELNGCKAI-NIVT 151

Query: 193 DNCV--EVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGA---FDPIEEIA 247
           +     E   D +G     +L+   + +    +I   V+  +  +  G       ++E+ 
Sbjct: 152 EKAFDSETYDDWKGDFDIKKLKEN-IAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVY 210

Query: 248 DICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTG----------IERADSVTWNPHKLMGT 297
           +I +++ +++ +D+A         K R P+              + AD++T +  K    
Sbjct: 211 EIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLL 270

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 56/469 (11%), Positives = 129/469 (27%), Gaps = 121/469 (25%)

Query: 9   KQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQV 68
           K ++++  +   ++ D  + V         K  +D  I      +       F TL  + 
Sbjct: 19  KDILSVFEDAFVDNFDCKD-VQDMPKSILSKEEID-HIIMSKDAVSGT-LRLFWTLLSKQ 75

Query: 69  RTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYE-IAPVFILMETVVLEKMRQIIGW 127
                 F+       +V+ +  ++L++         E   P    M T +  + R  +  
Sbjct: 76  EEMVQKFVE------EVLRINYKFLMSP-----IKTEQRQPS---MMTRMYIEQRDRL-- 119

Query: 128 QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV 187
              + + A   ++S        R + +   ++  L     + V                +
Sbjct: 120 YNDNQVFAKY-NVS--------RLQPYLKLRQALLELRPAKNV---------------LI 155

Query: 188 CGLGTDNC------VEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD 241
            G+           ++V    +            ++ K    I F++N       L   +
Sbjct: 156 DGVL--GSGKTWVALDVCLSYK------------VQCKMDFKI-FWLN-------LKNCN 193

Query: 242 PIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHP------RLTGI------ERA----D 285
             E + ++ Q   +   +D  W      S   +         L  +      E       
Sbjct: 194 SPETVLEMLQ--KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 286 SVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGR 345
           +V  N        L C         LL +  +   ++L        +  D     +    
Sbjct: 252 NV-QNAKAWNAFNLSCKI-------LLTTRFKQVTDFL-SAATTTHISLDHHSMTLTPDE 302

Query: 346 HNDIFKLWLQWRA--------KGD--------EGFEKQIDRLMELAEYMVKKIKSMPDKF 389
              +   +L  R           +        E     +            K+ ++ +  
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 390 YLILEPEMVNVSFWYL---PTRVRNMPHEKRLNIL-GEITPILKGRMMQ 434
             +LEP      F  L   P    ++P    L+++  ++       ++ 
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSA-HIP-TILLSLIWFDVIKSDVMVVVN 409

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	480
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	100.0
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	100.0
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	100.0
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	100.0
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	100.0
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	100.0
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	100.0
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	100.0
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	100.0
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	100.0
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	100.0
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	100.0
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	100.0
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	100.0
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	100.0
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	100.0
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	100.0
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	100.0
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.98
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.98
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.98
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.98
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.97
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.97
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.97
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.97
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.97
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.97
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.97
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.97
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.97
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.97
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.97
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.97
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.97
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.97
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.97
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.97
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.97
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.97
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.96
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.96
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.96
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.96
1svv_A	359	Threonine aldolase; structural genomics, structura	99.96
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.96
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.95
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.95
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.95
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.95
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.95
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.95
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.95
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.95
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.95
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.95
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.95
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.95
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.95
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.95
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.95
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.95
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.95
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.95
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.95
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.94
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.94
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.94
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.94
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.94
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.94
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.94
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.94
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.94
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.94
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.94
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.94
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.94
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.94
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.94
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.94
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.94
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.94
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.94
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.94
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.94
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.94
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.94
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.94
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.94
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.94
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.94
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.94
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.94
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.94
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.94
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.94
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.93
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.93
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.93
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.93
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.93
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.93
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.93
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.93
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.93
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.93
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.93
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.93
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.93
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.93
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.93
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.93
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.93
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.92
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.92
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.92
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.92
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.92
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.92
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.92
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.92
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.92
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.92
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.92
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.92
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.92
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.92
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.92
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.92
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.92
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.92
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.92
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.91
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.91
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.91
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.91
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.91
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.91
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.91
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.91
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.91
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.91
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.91
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.91
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.91
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.9
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.9
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.9
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.9
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.9
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.9
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.9
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.9
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.9
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.9
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.89
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.89
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.89
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.89
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.89
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.89
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.89
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.89
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.89
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.89
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.89
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.89
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.89
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.89
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.89
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.88
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.88
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.81
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.88
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.88
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.88
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.88
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.88
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.88
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.88
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.88
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.88
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.88
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.88
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.88
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.88
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.88
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.88
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.87
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.87
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.87
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.87
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.87
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.87
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.87
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.87
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.87
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.87
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.87
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.87
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.87
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.86
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.86
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.86
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.86
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.86
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.85
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.85
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.85
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.84
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.84
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.84
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.84
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.83
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.83
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.83
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.82
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.82
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.82
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.81
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.8
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.8
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.79
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.79
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.79
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.79
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.79
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.79
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.78
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.78
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.77
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.77
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.67
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.47
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.59

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=100.00  E-value=4e-68  Score=541.92  Aligned_cols=475  Identities=58%  Similarity=1.061  Sum_probs=425.0

Q ss_pred             cHHHHHHHHHHHHHHHHHhhccCCCcccCCCCHHHHHHh---cCCCCCCCCCCHHHHHHHHHhhccCCccCCCCCccccc
Q psy12303          3 TTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAM---LDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQL   79 (480)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~   79 (480)
                      +.++++++++|++++|+++..+++.+|.++++|++++..   ++..+|++|.+++++++++++++.+++++.||+|++|+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~~~  102 (511)
T 3vp6_A           23 QTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYGVRTGHPRFFNQL  102 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTSCSCCCCCHHHHHHCBTTBCCCCCSSCCCHHHHHHHHHHHHHTSCCTTSTTEESSS
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCceEee
Confidence            357899999999999999998777788899999999999   89999999999999999999999999999999999999


Q ss_pred             cCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCC--CCCeEECCChhHHHHHHHHHHHHhcCchh
Q psy12303         80 SCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQ--GGDSILAPGGSISNLYAFLAARHKMFPTY  157 (480)
Q Consensus        80 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~--~~~~~~t~ggt~a~~~al~~~~~~~~~~~  157 (480)
                      +++..+++++++++.+.+|++...|..+|..+++|+++++|+++++|++  ..+++||+|||+||+.++.+++++++++.
T Consensus       103 ~~~~~~~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~  182 (511)
T 3vp6_A          103 STGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEV  182 (511)
T ss_dssp             SCCCCHHHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHH
T ss_pred             cCCCcHHHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhh
Confidence            9999999999999999999999999999999999999999999999997  46899999999999999999999887777


Q ss_pred             HhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcc
Q psy12303        158 KEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVL  237 (480)
Q Consensus       158 ~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~  237 (480)
                      ++.|+...| +.+|+++..+|+|+.++++.+|++..+++.||++++++||+++|+++|+++.++|.+|++|++++++|++
T Consensus       183 ~~~G~~~~~-~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~  261 (511)
T 3vp6_A          183 KTKGMAAVP-KLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVY  261 (511)
T ss_dssp             HHHCGGGSC-CEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSS
T ss_pred             hhcCcccCC-CeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCC
Confidence            778865555 4489999999999999999999877689999999999999999999999998889999999999999999


Q ss_pred             ccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhc
Q psy12303        238 GAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQ  317 (480)
Q Consensus       238 G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~  317 (480)
                      |.++|+++|+++|++||+|+|||+||+++.+.++.++. .+.|++++|++++++|||+++|.+||+++++++..+.....
T Consensus       262 G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~-~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~  340 (511)
T 3vp6_A          262 GAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQ  340 (511)
T ss_dssp             CCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGG-GGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHC
T ss_pred             cccccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhh-hccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhc
Confidence            99999999999999999999999999999998888777 78888899999999999999999999999999887777777


Q ss_pred             CCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec--CC
Q psy12303        318 MSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EP  395 (480)
Q Consensus       318 ~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~--~~  395 (480)
                      ..+.|+......+...+++++++++++|++.++++|++++.+|.+++++++++..++++++.+.|++ .||++++.  +|
T Consensus       341 ~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~-~pg~~l~~~~~p  419 (511)
T 3vp6_A          341 MHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKN-REEFEMVFNGEP  419 (511)
T ss_dssp             CCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CTTEEESSSSCC
T ss_pred             cCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEecCCC
Confidence            7888987765555556778889999999999999999999999999999999999999999999999 89999987  68


Q ss_pred             ceeEEEEEeecCccCCCchh-hHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        396 EMVNVSFWYLPTRVRNMPHE-KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       396 ~~~~v~f~~~~~~~~~~~~~-~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                      ..++++|++.|...++...+ .....++..+.++.++|.++|.+++.+....+..+++|++++++.+|++||+.+++.|+
T Consensus       420 ~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~  499 (511)
T 3vp6_A          420 EHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIE  499 (511)
T ss_dssp             SSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHH
T ss_pred             CeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHH
Confidence            89999999988765433222 23334555567899999999988887655555346899997699999999999999999


Q ss_pred             HhhccC
Q psy12303        475 RLGHDL  480 (480)
Q Consensus       475 ~~~~~l  480 (480)
                      ++.++|
T Consensus       500 ~~~~~~  505 (511)
T 3vp6_A          500 RLGQDL  505 (511)
T ss_dssp             HHHC--
T ss_pred             HHHHhh
Confidence            988764

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=100.00  E-value=1.2e-65  Score=519.21  Aligned_cols=451  Identities=25%  Similarity=0.372  Sum_probs=379.5

Q ss_pred             cHHHHHHHHHHHHHHHHHhhccCCCcccCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHhhcc-CCccCCCCCccccccC
Q psy12303          3 TTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLK-YQVRTGHPMFMNQLSC   81 (480)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~-~~~~~~~p~~~~~~~~   81 (480)
                      +-++.+++++|++++|++++.++  ||.+.++|+++++.++..+|++|.+++++++++++.+. ...+|.||+|++|+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~p~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   82 (475)
T 3k40_A            5 EFKDFAKTMVDFIAEYLENIRER--RVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVTHWHSPKFHAYFPT   82 (475)
T ss_dssp             HHHHHHHHHHHHHHHHHHTGGGS--CSSCSSCTTCSGGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTCTTBCCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHhccccC--CCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCCCCCCcCceeeCCC
Confidence            56889999999999999998864  89999999999999999999999999999999988654 5557899999999999


Q ss_pred             CCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCC---------CeEECCChhHHHHHHHHHHHHh
Q psy12303         82 GLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGG---------DSILAPGGSISNLYAFLAARHK  152 (480)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~---------~~~~t~ggt~a~~~al~~~~~~  152 (480)
                      +..+++++++++.+.+|++...|..+|..+++|+++++|+++++|++..         +++||+|||+||+.++.++|++
T Consensus        83 ~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~  162 (475)
T 3k40_A           83 ANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAK  162 (475)
T ss_dssp             CCCHHHHHHHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999752         6999999999999999999987


Q ss_pred             cCchhHhcCCC-----ccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEE
Q psy12303        153 MFPTYKEKGLS-----AIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFF  227 (480)
Q Consensus       153 ~~~~~~~~g~~-----~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~  227 (480)
                      ..+..+..|..     ..| +.+|+++..+|+|+.+++...|+   +++.||+++++ +|+++|+++|+++.+++..|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~-~~~vi~s~~~H~s~~~~~~~~g~---~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~  237 (475)
T 3k40_A          163 KLKEVKELHPEWDEHTILG-KLVGYCSDQAHSSVERAGLLGGV---KLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFY  237 (475)
T ss_dssp             HHHHHHHHCTTSCHHHHHH-HEEEEEETTSCHHHHHHHHHHTC---EEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHhhccCcccccccccC-CeEEEECCCchHHHHHHHHHcCC---ceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEE
Confidence            54332222210     012 45899999999999999999988   89999999999 9999999999998888888999


Q ss_pred             EEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEe
Q psy12303        228 VNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFK  307 (480)
Q Consensus       228 v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~  307 (480)
                      |++++++|++|.++|+++|+++|++||+|+|||+||+++.+..+..+. .+.+++.+|++++++|||+++|+++|+++++
T Consensus       238 v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~-~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~  316 (475)
T 3k40_A          238 AVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRH-LMKGIESADSFNFNPHKWMLVNFDCSAMWLK  316 (475)
T ss_dssp             EEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGG-GGTTGGGCSEEEECHHHHSSCCSSCEEEEES
T ss_pred             EEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHH-HhcCcccCCEEEECchhccCCCCceEEEEEe
Confidence            999999999999999999999999999999999999998887777666 6778888999999999999999999999999


Q ss_pred             CchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12303        308 QDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD  387 (480)
Q Consensus       308 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~  387 (480)
                      ++..+.......+.|+.....  ...+++.+++++++|++.++++|++++.+|.+++++++++.+++++++.+.|++ .|
T Consensus       317 ~~~~l~~~~~~~~~yl~~~~~--~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~  393 (475)
T 3k40_A          317 DPSWVVNAFNVDPLYLKHDMQ--GSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVA-DS  393 (475)
T ss_dssp             SGGGC-----------------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ST
T ss_pred             CHHHHHHHhcCCccccCCCcC--CCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence            987765555556777755321  223567788999999999999999999999999999999999999999999999 89


Q ss_pred             CeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHH
Q psy12303        388 KFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDID  467 (480)
Q Consensus       388 g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~  467 (480)
                      +++++.++..++++|++.+..              ..+.++.++|.++|.+++.++...+ ..++|+++.++.+|++||+
T Consensus       394 g~~l~~~~~~~iv~f~~~~~~--------------~~~~~l~~~L~~~g~~~~~~~~~~g-~~~lR~~~~~~~tt~~di~  458 (475)
T 3k40_A          394 RFELAAEINMGLVCFRLKGSN--------------ERNEALLKRINGRGHIHLVPAKIKD-VYFLRMAICSRFTQSEDME  458 (475)
T ss_dssp             TEEESSCCBTTEEEEEESSCH--------------HHHHHHHHHHHHHTSCBCEEEEETT-EEEEEEECCCTTCCHHHHH
T ss_pred             CEEEecCCceEEEEEEeCCch--------------HHHHHHHHHHHhCCcEEEEeeEECC-EEEEEEEeCCCCCCHHHHH
Confidence            999998888999999874321              1135778889999988888877777 6899999888999999999


Q ss_pred             HHHHHHHHhhcc
Q psy12303        468 FLLTEMDRLGHD  479 (480)
Q Consensus       468 ~~~~~l~~~~~~  479 (480)
                      ++++.|++++++
T Consensus       459 ~~~~~i~~~~~~  470 (475)
T 3k40_A          459 YSWKEVSAAADE  470 (475)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=100.00  E-value=4.4e-64  Score=513.34  Aligned_cols=475  Identities=58%  Similarity=1.058  Sum_probs=408.7

Q ss_pred             cHHHHHHHHHHHHHHHHHhhccCCCcccCCCCHHHHHHh---cCCCCCCCCCCHHHHHHHHHhhccCCccCCCCCccccc
Q psy12303          3 TTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAM---LDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQL   79 (480)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~   79 (480)
                      +.++++++++|++++|++++.+++.||.+.++|+++++.   ++..+|++|.+++++++++++++.+++.+.||+|++|+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~   99 (504)
T 2okj_A           20 QTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYGVRTGHPRFFNQL   99 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTSCSCCCCCHHHHHSCBTTBCCCCCSSCCCHHHHHHHHHHHHHTSCCTTCTTEESSS
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCEEEEc
Confidence            467899999999999999998877789999999999998   89999999999999999999999988888899999999


Q ss_pred             cCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCC--CCCeEECCChhHHHHHHHHHHHHhcCchh
Q psy12303         80 SCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQ--GGDSILAPGGSISNLYAFLAARHKMFPTY  157 (480)
Q Consensus        80 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~--~~~~~~t~ggt~a~~~al~~~~~~~~~~~  157 (480)
                      +++..+.+++++++.+++|++...|..+|..+++|+++++|+++++|++  ..+++||+|||+||++++.+++++.+++.
T Consensus       100 ~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~  179 (504)
T 2okj_A          100 STGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEV  179 (504)
T ss_dssp             SCCCCHHHHHHHHHHHHHCCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTH
T ss_pred             cCCCCHHHHHHHHHHHhhccCCCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHH
Confidence            9999999999999999999999999999999999999999999999998  67899999999999999999998766555


Q ss_pred             HhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcc
Q psy12303        158 KEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVL  237 (480)
Q Consensus       158 ~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~  237 (480)
                      ++.|....+ +.+|+++..+|+++.+++..+|++..+++.||+++++++|+++|+++|+++.++|.+|++|++++|+|++
T Consensus       180 ~~~G~~~~~-~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~t  258 (504)
T 2okj_A          180 KTKGMAAVP-KLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVY  258 (504)
T ss_dssp             HHHCGGGSC-CEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSS
T ss_pred             hhcCccccC-CeEEEECCcchHHHHHHHHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCC
Confidence            555532212 4489999999999999999999865578999999899999999999999888888889999999999999


Q ss_pred             ccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhc
Q psy12303        238 GAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQ  317 (480)
Q Consensus       238 G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~  317 (480)
                      |.++|+++|+++|++||+|+|||+||+++.+.++.++. .+.+++++|++++++|||+++|+++|+++++++..+.....
T Consensus       259 G~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~-~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~  337 (504)
T 2okj_A          259 GAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQ  337 (504)
T ss_dssp             CCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGG-GGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHC
T ss_pred             CCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHh-hcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhc
Confidence            99999999999999999999999999999987777666 67777789999999999999999999999998766665555


Q ss_pred             CCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec--CC
Q psy12303        318 MSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EP  395 (480)
Q Consensus       318 ~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~--~~  395 (480)
                      ..++|+.+........+++++++++++|++.++++|++++.+|.+++++++++..++++++.+.|++ .++++++.  +|
T Consensus       338 ~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~p  416 (504)
T 2okj_A          338 MCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKN-REEFEMVFNGEP  416 (504)
T ss_dssp             CCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CTTEEESSSSCC
T ss_pred             CCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEecCCC
Confidence            6778886543322334667888899999999999999999999999999999999999999999999 89999987  58


Q ss_pred             ceeEEEEEeecCccCCCc-hhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        396 EMVNVSFWYLPTRVRNMP-HEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       396 ~~~~v~f~~~~~~~~~~~-~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                      ..++++|++.+....+.. ..+....+...+.++.++|.++|.+++.++...+..+++|+++.++.+|++||+++++.|+
T Consensus       417 ~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~  496 (504)
T 2okj_A          417 EHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIE  496 (504)
T ss_dssp             SSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHH
T ss_pred             CeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            889999998764322111 1122333444456788999999987777655555336999996679999999999999999


Q ss_pred             HhhccC
Q psy12303        475 RLGHDL  480 (480)
Q Consensus       475 ~~~~~l  480 (480)
                      ++++++
T Consensus       497 ~~~~~~  502 (504)
T 2okj_A          497 RLGQDL  502 (504)
T ss_dssp             HHHTC-
T ss_pred             HHHHHH
Confidence            988764

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=100.00  E-value=6.8e-65  Score=515.27  Aligned_cols=452  Identities=24%  Similarity=0.319  Sum_probs=397.2

Q ss_pred             cHHHHHHHHHHHHHHHHHhhccCCCcccCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHhhccC-CccCCCCCccccccC
Q psy12303          3 TTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKY-QVRTGHPMFMNQLSC   81 (480)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~-~~~~~~p~~~~~~~~   81 (480)
                      +-++.+++++|++++|++++.+  .||.+.++|+++++.++..+|++|.+++++++++++.+.+ ..+|+||+|++|+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   87 (481)
T 4e1o_A           10 EYRERGREMVDYICQYLSTVRE--RRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVVHWQSPHMHAYYPA   87 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHSGGG--SCSSCCCCTTTTGGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTSTTBCSSSCC
T ss_pred             HHHHHHHHHHHHHHHHHhcccc--CCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCC
Confidence            4678999999999999999875  4899999999999999999999999999999999887554 457899999999999


Q ss_pred             CCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCC----------CCeEECCChhHHHHHHHHHHHH
Q psy12303         82 GLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQG----------GDSILAPGGSISNLYAFLAARH  151 (480)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~----------~~~~~t~ggt~a~~~al~~~~~  151 (480)
                      +..+++++++++.+.+|.+...|..+|+.+++|+++.+|+++++|++.          +++++|+|||+||+.++.++|+
T Consensus        88 ~~~~~~~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~  167 (481)
T 4e1o_A           88 LTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARK  167 (481)
T ss_dssp             CCCHHHHHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999975          2689999999999999999998


Q ss_pred             hcCchhHhcCCC-----ccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccE
Q psy12303        152 KMFPTYKEKGLS-----AIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPF  226 (480)
Q Consensus       152 ~~~~~~~~~g~~-----~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~  226 (480)
                      +.++..+..|..     ..| +.+|+++..+|+|+.+++.+.|.   +++.||+++++++|+++|+++|+++..+|..|+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~-~~~v~~s~~~H~s~~~~~~~~g~---~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~  243 (481)
T 4e1o_A          168 NKILEMKTSEPDADESSLNA-RLVAYASDQAHSSVEKAGLISLV---KMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPV  243 (481)
T ss_dssp             HHHHHHHHHCTTSCHHHHHT-TEEEEEETTSCHHHHHHHHHHTC---EEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHhhhcCcccccccccC-CeEEEEcCcchHHHHHHHHhCCC---ceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcE
Confidence            754433222210     013 45899999999999999998887   899999998999999999999999888888899


Q ss_pred             EEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEE
Q psy12303        227 FVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHF  306 (480)
Q Consensus       227 ~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~  306 (480)
                      +|++++++|++|.++|+++|+++|++||+|+|||+||+++.+.++.++. ...|++.+|++++++|||+++|+++|++++
T Consensus       244 ~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~-~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~  322 (481)
T 4e1o_A          244 FVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRG-FLKGIEYADSFTFNPSKWMMVHFDCTGFWV  322 (481)
T ss_dssp             EEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGG-GGTTGGGCSEEEECHHHHSSCCSSCEEEEE
T ss_pred             EEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHH-HhcCcccCCEEEEChHHhcCCCCceEEEEE
Confidence            9999999999999999999999999999999999999999888887776 777888899999999999999999999999


Q ss_pred             eCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy12303        307 KQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP  386 (480)
Q Consensus       307 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~  386 (480)
                      +++..+.......+.|+.....  ...+++.+++++++|++.++++|++++.+|.+++++++++..++++++.+.|++ .
T Consensus       323 ~~~~~l~~~~~~~~~yl~~~~~--~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~  399 (481)
T 4e1o_A          323 KDKYKLQQTFSVNPIYLRHANS--GVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRN-D  399 (481)
T ss_dssp             SBHHHHHTTTCCCCGGGCCTTT--TTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-C
T ss_pred             eCHHHHHHHhcCCchhccCccc--CCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-C
Confidence            9988776666667778765432  223567788999999999999999999999999999999999999999999999 8


Q ss_pred             CCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHH
Q psy12303        387 DKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDI  466 (480)
Q Consensus       387 ~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di  466 (480)
                      |+++++.++..++++|++.+..              ..+.++.++|.++|.+++.++...+ ..++|+++.++.+|++||
T Consensus       400 ~g~~~~~~~~~~~v~f~~~~~~--------------~~~~~l~~~L~~~g~~~~~~~~~~g-~~~lR~~~~~~~tt~~di  464 (481)
T 4e1o_A          400 PSFEIPAKRHLGLVVFRLKGPN--------------SLTENVLKEIAKAGRLFLIPATIQD-KLIIRFTVTSQFTTRDDI  464 (481)
T ss_dssp             TTEECCSCCCSSEEEEEESSCH--------------HHHHHHHHHHHHHCSSBCEEEEETT-EEEEEEECCCTTCCHHHH
T ss_pred             CCeEEecCCceeEEEEEeCCch--------------HHHHHHHHHHHhCCeEEEEeeEECC-EEEEEEEeCCCCCCHHHH
Confidence            9999988888999999874311              1135678889999988777777777 689999988899999999


Q ss_pred             HHHHHHHHHhhcc
Q psy12303        467 DFLLTEMDRLGHD  479 (480)
Q Consensus       467 ~~~~~~l~~~~~~  479 (480)
                      ++++++|++++++
T Consensus       465 ~~~~~~i~~~~~~  477 (481)
T 4e1o_A          465 LRDWNLIRDAATL  477 (481)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=100.00  E-value=6.9e-64  Score=512.77  Aligned_cols=475  Identities=48%  Similarity=0.916  Sum_probs=403.8

Q ss_pred             cHHHHHHHHHHHHHH-HHHhhccCCCcccCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHhhccCCccCCCCCccccccC
Q psy12303          3 TTETFLKQLVNILLN-YIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSC   81 (480)
Q Consensus         3 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~   81 (480)
                      +.++++++++|++++ |++++.+.+.||.+.++|++++..++..+|++|.+++++++++++++.++..+.||+|++++++
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  117 (515)
T 2jis_A           38 AVEALLRAVFGVVVDEAIQKGTSVSQKVCEWKEPEELKQLLDLELRSQGESQKQILERCRAVIRYSVKTGHPRFFNQLFS  117 (515)
T ss_dssp             HHHHHHHHHHHHHHHHTTTGGGCTTSCSCCCCCHHHHHHHHCCCCCSSCCCHHHHHHHHHHHHHHSCCTTSTTEESSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCHHHHHhhcccCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCeEEEeeC
Confidence            467899999999999 9999887777999999999999999999999999999999999999988888889999999999


Q ss_pred             CCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcC
Q psy12303         82 GLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKG  161 (480)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g  161 (480)
                      +..+.+++++++.++.|++...|..+|..+++|.++++|+++++|+++.+++||+|||+||++++.+++++.++..+..|
T Consensus       118 ~~~~~~~~~~~l~~~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G  197 (515)
T 2jis_A          118 GLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRG  197 (515)
T ss_dssp             CCCHHHHHHHHHHHHHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHC
T ss_pred             CCCHHHHHHHHHHHHhccCCCchhhchHHHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcC
Confidence            99999999999999999998899999999999999999999999998888999999999999999999876554444344


Q ss_pred             CCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc
Q psy12303        162 LSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD  241 (480)
Q Consensus       162 ~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~  241 (480)
                      ....+ +.+|+++..+|+++.+++..+|++..+++.||+++++.+|+++|+++|+++.++|.+|++|++++++|++|.++
T Consensus       198 ~~~~~-~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~  276 (515)
T 2jis_A          198 LRTLP-PLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFD  276 (515)
T ss_dssp             GGGSC-CEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC
T ss_pred             ccccC-CeEEEECCCccHHHHHHHHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCcc
Confidence            32222 44899999999999999999998655789999998999999999999998887888899999999999999999


Q ss_pred             ChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCc-hhhHhhhcCCc
Q psy12303        242 PIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQD-GLLISCNQMSA  320 (480)
Q Consensus       242 ~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~-~~~~~~~~~~~  320 (480)
                      |+++|+++|++||+|+|||+||+++.+.++.++. .+.+++++|++++|+|||+++|+++|+++++++ ..+.......+
T Consensus       277 ~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~-~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~  355 (515)
T 2jis_A          277 PLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRH-LLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQA  355 (515)
T ss_dssp             CHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGG-GGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC--
T ss_pred             CHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHh-hcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCc
Confidence            9999999999999999999999999998887766 677888999999999999999999999999987 56665555567


Q ss_pred             ccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEE
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNV  400 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v  400 (480)
                      +|+.+........+++++++++++|++.++++|++++.+|.+++++++++..++++++.+.|++ .++++++.+|..+.+
T Consensus       356 ~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~~~~~~~~~v  434 (515)
T 2jis_A          356 SYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKK-REGFELVMEPEFVNV  434 (515)
T ss_dssp             -------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTEEESSCCSSSEE
T ss_pred             hhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCCeeEE
Confidence            7876543333334667888899999999999999999999999999999999999999999999 899999888888889


Q ss_pred             EEEeecCccCCC-chhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        401 SFWYLPTRVRNM-PHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       401 ~f~~~~~~~~~~-~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +|++.|....+. +..++...+.+++..+.+++.++|.+++.++...+..+++|++++++.+|++||+++++.|++++++
T Consensus       435 ~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~  514 (515)
T 2jis_A          435 CFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD  514 (515)
T ss_dssp             EEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             EEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            999876533221 1123334454445678889999998877765555535799999558999999999999999998876


Q ss_pred             C
Q psy12303        480 L  480 (480)
Q Consensus       480 l  480 (480)
                      +
T Consensus       515 ~  515 (515)
T 2jis_A          515 L  515 (515)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=100.00  E-value=1.4e-60  Score=485.66  Aligned_cols=455  Identities=23%  Similarity=0.364  Sum_probs=379.6

Q ss_pred             cHHHHHHHHHHHHHHHHHhhccCCCcccCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHhhc-cCCccCCCCCccccccC
Q psy12303          3 TTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTL-KYQVRTGHPMFMNQLSC   81 (480)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~i~~~~~~~~-~~~~~~~~p~~~~~~~~   81 (480)
                      +-++.+++++|++++|++++.+  .||.+..+|++++..++..+|++|.+++++++++++.+ +...+|.||+|++|+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   82 (486)
T 1js3_A            5 DFRRRGKEMVDYMADYLEGIEG--RQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPT   82 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHTGGG--SCSSCCCCTTCSGGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSSCC
T ss_pred             HHHHHHHHHHHHHHHHHhhccc--CCCCCCCCHHHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCceEeCCC
Confidence            4678999999999999999885  48999999999999999999999999999999998865 55557899999999999


Q ss_pred             CCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCC---------CCeEECCChhHHHHHHHHHHHHh
Q psy12303         82 GLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQG---------GDSILAPGGSISNLYAFLAARHK  152 (480)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~---------~~~~~t~ggt~a~~~al~~~~~~  152 (480)
                      +..+++.+++++.+++|++...|..+|..+++|+++++|+++++|++.         .++++|+|||+||+.++.+++++
T Consensus        83 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~  162 (486)
T 1js3_A           83 ASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTK  162 (486)
T ss_dssp             CCCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999974         35899999999999999999875


Q ss_pred             cCchhHhc-CCCc---cCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEE
Q psy12303        153 MFPTYKEK-GLSA---IKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFV  228 (480)
Q Consensus       153 ~~~~~~~~-g~~~---~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v  228 (480)
                      ..+..+.. |...   ..++.+|+++..+|+++.++++.+|+   +++.||+++++.+|+++|+++|+++.++|..|++|
T Consensus       163 ~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~---~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~v  239 (486)
T 1js3_A          163 VVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGV---KLKAIPSDGKFAMRASALQEALERDKAAGLIPFFV  239 (486)
T ss_dssp             HHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTC---EEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCC---ceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEE
Confidence            32211111 1100   00134688999999999999999998   78999998899999999999999988888888999


Q ss_pred             EeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeC
Q psy12303        229 NCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQ  308 (480)
Q Consensus       229 ~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~  308 (480)
                      ++++|+|++|.++|+++|+++|++||+|+|||+||+++.+..+.++. .+.+++++|++++++|||+++|+++|++++++
T Consensus       240 v~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~-~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~  318 (486)
T 1js3_A          240 VATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRH-LLNGVEFADSFNFNPHKWLLVNFDCSAMWVKR  318 (486)
T ss_dssp             EEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGG-GGTTGGGCSEEEECHHHHSSCCSSCEEEEESC
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHH-HhcCccccCeeEEchhhhcCCCcceEEEEEeC
Confidence            99999999999999999999999999999999999999887776665 66777789999999999999999999999998


Q ss_pred             chhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy12303        309 DGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDK  388 (480)
Q Consensus       309 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g  388 (480)
                      +..+.......+.|+...........++.+++++++|++.++++|++++.+|.+++++++++..++++++.+.|++ .|+
T Consensus       319 ~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~~  397 (486)
T 1js3_A          319 RTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQ-DPR  397 (486)
T ss_dssp             HHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTT
T ss_pred             HHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence            8654444444566775533211223456677888999999999999999999999999999999999999999999 899


Q ss_pred             eEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHH
Q psy12303        389 FYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDF  468 (480)
Q Consensus       389 ~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~  468 (480)
                      ++++.+|..+.++|++.+..              ..+.++.++|.++|.+++.++.+.+ .+++|++++++.+|++||++
T Consensus       398 ~~~~~~~~~~~v~f~~~~~~--------------~~~~~l~~~L~~~g~~~~~~~~~~~-~~~lRi~~~~~~~t~~di~~  462 (486)
T 1js3_A          398 FEVCAEVTLGLVCFRLKGSD--------------GLNEALLERINSARKIHLVPCRLRG-QFVLRFAICSRKVESGHVRL  462 (486)
T ss_dssp             EEECSCCCSSEEEEEESSCH--------------HHHHHHHHHHHHHTSCBCEEEEETT-EEEEEEECCCTTCCHHHHHH
T ss_pred             eEEeCCCceeEEEEEecChH--------------HHHHHHHHHHHhcCCEEEEEEEECC-EEEEEEEeCCCCCCHHHHHH
Confidence            99987788899999764211              1135677888888977777666666 68999998789999999999


Q ss_pred             HHHHHHHhhcc
Q psy12303        469 LLTEMDRLGHD  479 (480)
Q Consensus       469 ~~~~l~~~~~~  479 (480)
                      +++.|++++++
T Consensus       463 ~~~~l~~~~~~  473 (486)
T 1js3_A          463 AWEHIRGLAAE  473 (486)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987653

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=100.00  E-value=2.3e-58  Score=470.20  Aligned_cols=456  Identities=25%  Similarity=0.396  Sum_probs=372.7

Q ss_pred             cHHHHHHHHHHHHHHHHHhhccCCCcccCCCCHHHHHHhcCC-CCCCCCCCHHHHHHHHHh-hccCCccCCCCCcccccc
Q psy12303          3 TTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDL-DIPEKGLPLQKLIDDCFT-TLKYQVRTGHPMFMNQLS   80 (480)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~p~~~~~~~~i~~~~~~-~~~~~~~~~~p~~~~~~~   80 (480)
                      ..++.+++++|++++|+++..   .| .+...|++++..++. .+|++|.+++++++++++ ++++.+++.||+|++++.
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~  108 (497)
T 2qma_A           33 EFASVMSHTTSAMKSVFEQVN---AP-YSGMDPKALEDAINAVDLDNKNAPLKSVIDDVAELVAKNAIFTQHPDCIAHLH  108 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC---SS-SCCCCHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHTTTTSCCTTSTTBCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHhhcc---CC-CCCCCHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCC
Confidence            357889999999999998873   23 567789999998776 589999999999999976 567778899999999999


Q ss_pred             CCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCC-CCeEECCChhHHHHHHHHHHHHhcC-----
Q psy12303         81 CGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQG-GDSILAPGGSISNLYAFLAARHKMF-----  154 (480)
Q Consensus        81 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~-~~~~~t~ggt~a~~~al~~~~~~~~-----  154 (480)
                      ++..+++++++++....|++...|..+|..+++|+++++|+++++|+++ ..++||+|||+||..++.++|++..     
T Consensus       109 ~~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~  188 (497)
T 2qma_A          109 TPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSG  188 (497)
T ss_dssp             CCCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999988999888999999999999999999999999975 7899999999999999999876432     


Q ss_pred             chhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCC
Q psy12303        155 PTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGT  234 (480)
Q Consensus       155 ~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~  234 (480)
                      ++.+..|.....|+.+|+++..+|+|+.+++..+|.+..+++.||+++++.+|+++|+++|+++.++|.+|++|++++++
T Consensus       189 ~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~  268 (497)
T 2qma_A          189 HSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGT  268 (497)
T ss_dssp             CCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSC
T ss_pred             cchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCC
Confidence            12223443211135589999999999999999998865478999999899999999999999887777667899999999


Q ss_pred             CccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHh
Q psy12303        235 TVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLIS  314 (480)
Q Consensus       235 ~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~  314 (480)
                      |++|.++|+++|.++|++||+|+|||+||+++...++ ++. .+.+++.+|++++|+|||+++|+++|+++++++..+..
T Consensus       269 ~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~-~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~  346 (497)
T 2qma_A          269 TDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSS-HKS-RLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNFKF  346 (497)
T ss_dssp             TTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGST-TGG-GGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGGGGG
T ss_pred             CCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCc-chH-hhcCcccCCEEEEcchhccCCCcceEEEEEeCHHHHHH
Confidence            9999999999999999999999999999999988776 554 56777789999999999999999999999998865543


Q ss_pred             hhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC
Q psy12303        315 CNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE  394 (480)
Q Consensus       315 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~  394 (480)
                      . .....|+.....   ...++..++++++|++.++++|++++.+|.+++++++++..++++++.+.|++ .++++++.+
T Consensus       347 ~-~~~~~yl~~~~~---~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~  421 (497)
T 2qma_A          347 L-LHHADYLNREHD---ELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRT-NDQFELLAE  421 (497)
T ss_dssp             G-CC-----------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHT-CTTEEECSC
T ss_pred             h-cCCchhcCCccc---cCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEcC
Confidence            2 234556543221   12345567788999999999999999999999999999999999999999999 899999888


Q ss_pred             CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        395 PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       395 ~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                      |..++++|++.+...   .       .+.++.++.+++.++|.++..++...+ .+++|++++++.+|++||+++++.|+
T Consensus       422 ~~~~~v~f~~~~~~~---~-------~~~l~~~l~~~l~~~G~~~~~~~~~~g-~~~lRis~~~~~~t~edi~~~~~~l~  490 (497)
T 2qma_A          422 PSLSTVLFRATHETA---D-------LDELNKALRLEALTRGIAVLGETIVDG-KTALKFTILNPCLTTSDFESLLSKIN  490 (497)
T ss_dssp             CSSSEEEEEECCSSS---C-------HHHHHHHHHHHHHHHTSCBCEEEEETT-EEEEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCceEEEEEEcCCcc---C-------HHHHHHHHHHHHHhCCCEEEEeeEECC-EEEEEEEecCCCCCHHHHHHHHHHHH
Confidence            888999998764321   0       112235677888899988777666666 57999996699999999999999999


Q ss_pred             HhhccC
Q psy12303        475 RLGHDL  480 (480)
Q Consensus       475 ~~~~~l  480 (480)
                      ++++++
T Consensus       491 ~~~~~~  496 (497)
T 2qma_A          491 MLAVEL  496 (497)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            987654

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=100.00  E-value=6.4e-46  Score=374.15  Aligned_cols=403  Identities=15%  Similarity=0.126  Sum_probs=306.3

Q ss_pred             CHHHHHHhcCCCCCCCCCCHHHHHHHHHhhc--cCCccCCCCCccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhH
Q psy12303         34 HPAEMKAMLDLDIPEKGLPLQKLIDDCFTTL--KYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFI  111 (480)
Q Consensus        34 ~p~~~~~~~~~~~p~~~~~~~~i~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  111 (480)
                      +...++..++..+|++|.+++++++++++.+  +....++||.|+.   +.. + ..+.+++...++.+...|..+|...
T Consensus         6 ~~~~~~~~~~~~lp~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~---~~~-~-~~v~e~~~~a~~~~~~~~~~~~~~~   80 (452)
T 2dgk_A            6 AKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQ---TWD-D-ENVHKLMDLSINKNWIDKEEYPQSA   80 (452)
T ss_dssp             ---------CCSCCCSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSC---CCC-C-HHHHHHHHHTTTCBTTCTTTCHHHH
T ss_pred             chHHhhhccCCCCCCCCCCHHHHHHHHHHHhcCCCCCccCCCCeeC---CCc-h-HHHHHHHHHHhccCCCChhhChhHH
Confidence            3445666678899999999999999998876  3444678898885   222 2 3466888888888888888899999


Q ss_pred             HHHHHHHHHHHHHhCCCCCC-----eEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHH
Q psy12303        112 LMETVVLEKMRQIIGWQGGD-----SILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAA  186 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~-----~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~  186 (480)
                      ++|+++++|+++++|++...     +++|+|||+||++++.++++++.++.+..|... . +.+|+++. +|+++.+++.
T Consensus        81 ~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~-~-~~~vi~~~-~h~~~~~~~~  157 (452)
T 2dgk_A           81 AIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPT-D-KPNLVCGP-VQICWHKFAR  157 (452)
T ss_dssp             HHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCC-S-CCEEEESS-CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCC-C-CcEEEECC-CcHHHHHHHH
Confidence            99999999999999998755     899999999999999998864322222334210 1 23788888 9999999999


Q ss_pred             HcCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHc------CcEEEe
Q psy12303        187 VCGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY------NMWLHV  259 (480)
Q Consensus       187 ~~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~------~~~l~v  259 (480)
                      .+|+   +++.||+++ ++.+|+++|+++|+++      |++|++++|+|++|.++|+++|.++|+++      |+|+||
T Consensus       158 ~~G~---~v~~v~~~~~~~~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~v  228 (452)
T 2dgk_A          158 YWDV---ELREIPMRPGQLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHI  228 (452)
T ss_dssp             HTTC---EEEECCCBTTBCSCCHHHHHHHCCTT------EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_pred             HcCc---eEEEEecCCCCCeECHHHHHHHHhhC------CEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEE
Confidence            9998   889999987 7999999999999765      89999999999999999999999999996      999999


Q ss_pred             eccccccccc--cccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCC
Q psy12303        260 DAAWGGGLLL--SKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       260 D~a~~~~~~~--~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  337 (480)
                      |+||+++..+  .+...+ .+ ..+++|++++++|||+++|.++|+++++++..+.......+.|+...         ..
T Consensus       229 D~a~~~~~~~~~~~~~~~-~~-~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~---------~~  297 (452)
T 2dgk_A          229 DAASGGFLAPFVAPDIVW-DF-RLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQ---------IG  297 (452)
T ss_dssp             ECTTGGGTHHHHCTTCCC-ST-TSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCC---------EE
T ss_pred             EcccHHHHHHhhCccchh-hc-CCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCC---------CC
Confidence            9999998652  222222 22 25589999999999999999999999988754422222234454321         12


Q ss_pred             CccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC----CceeEEEEEeecCccCCC
Q psy12303        338 DKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE----PEMVNVSFWYLPTRVRNM  412 (480)
Q Consensus       338 ~~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~----~~~~~v~f~~~~~~~~~~  412 (480)
                      +++++++|++ .++++|++++.+|.+++++++++..++++++.+.|++ +++++++.+    +..++++|++.+..... 
T Consensus       298 ~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~-  375 (452)
T 2dgk_A          298 TFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK-LGPYEFICTGRPDEGIPAVCFKLKDGEDPG-  375 (452)
T ss_dssp             ECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSSEEEEEECCTTTBSSEEEEEECTTCCCS-
T ss_pred             CcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEecCCCCCCCeEEEEEEecCccccc-
Confidence            3345667777 7889999999999999999999999999999999999 888999864    56788899875321000 


Q ss_pred             chhhHHHHhhhhhHHHHHHHHhcccEE---EeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        413 PHEKRLNILGEITPILKGRMMQAGTMM---VGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       413 ~~~~~~~~l~~~~~~i~~~l~~~g~~~---~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                              ++  ..++.++|.++|+.+   ..+....+ ..++|++ .+..+|++|++++++.|+++++
T Consensus       376 --------~~--~~~l~~~L~~~Gi~v~~~~~~~~~~~-~~~lRis-~~~~~t~e~id~li~~l~~~~~  432 (452)
T 2dgk_A          376 --------YT--LYDLSERLRLRGWQVPAFTLGGEATD-IVVMRIM-CRRGFEMDFAELLLEDYKASLK  432 (452)
T ss_dssp             --------CC--HHHHHHHHHHTTCBCCEEECSTTCTT-CEEEEEE-CCTTCCHHHHHHHHHHHHHHHH
T ss_pred             --------CC--HHHHHHHHHhcCCeeeeeeCCcccCC-eEEEEEE-ecCCCCHHHHHHHHHHHHHHHH
Confidence                    00  146778888888642   22222223 4699999 6666789999999999988764

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=100.00  E-value=1.6e-43  Score=360.07  Aligned_cols=408  Identities=14%  Similarity=0.164  Sum_probs=317.4

Q ss_pred             CCCCHHHHHHhcCC-CCCCCCCCHHHHHHHHHhhccCCccCCCCCccccccCCCChHHhHHHHHHHHcCcCCcchhcChh
Q psy12303         31 HFYHPAEMKAMLDL-DIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPV  109 (480)
Q Consensus        31 ~~~~p~~~~~~~~~-~~p~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  109 (480)
                      +...+.+++..+|. .+|+.|.+++++++.+++.+..   ..+|+++.....+..+...+.+++...++.+...|..+|.
T Consensus        16 ~~~~~~~~~~~lp~~~~p~~~~~~~~~~~~~~~~i~l---~gnp~~~l~s~~t~~~~~~v~~~l~~~~~~~~~~~~~~p~   92 (502)
T 3hbx_A           16 STFASRYVRTSLPRFKMPENSIPKEAAYQIINDELML---DGNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDEYPV   92 (502)
T ss_dssp             CTTTSSGGGSCCCSSSCCSSCCCHHHHHHHHHHHGGG---SCCGGGBTTCCSCCCCCHHHHHHHHHTTTCBTTCTTTCHH
T ss_pred             ccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHhcc---CCCCCceeccccCCCCCHHHHHHHHHHhccCCCChhcChh
Confidence            44567778777776 8999999999999999887642   3566643222122222334568888888888888888999


Q ss_pred             hHHHHHHHHHHHHHHhCCC--CC---CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH
Q psy12303        110 FILMETVVLEKMRQIIGWQ--GG---DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC  184 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~--~~---~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~  184 (480)
                      ..++|+++++|+++++|++  +.   .+++|+|||+||+.++.+++.++.+..+..|...  ++..|+++..+|+++.++
T Consensus        93 ~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~--~~~~vi~~~~~h~s~~~~  170 (502)
T 3hbx_A           93 TTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPV--DKPNIVTGANVQVCWEKF  170 (502)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCC--SCCEEEEETTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCC--CCcEEEEcCCchHHHHHH
Confidence            9999999999999999998  32   3557999999999999998876443333345421  134899999999999999


Q ss_pred             HHHcCCCCCCeEEeeCCCC-CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHc------CcEE
Q psy12303        185 AAVCGLGTDNCVEVPSDKR-GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY------NMWL  257 (480)
Q Consensus       185 ~~~~g~~~~~v~~v~~~~~-~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~------~~~l  257 (480)
                      ++.+|+   +++.||++++ +.+|+++|+++++++      |++|++++++|++|.++|+++|.++|+++      |+|+
T Consensus       171 ~~~~G~---~~~~v~~~~~~~~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l  241 (502)
T 3hbx_A          171 ARYFEV---ELKEVKLSEGYYVMDPQQAVDMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPI  241 (502)
T ss_dssp             HHHTTC---EEEEECCBTTBCSCCHHHHHHHCCTT------EEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCE
T ss_pred             HHHcCc---eeEEEecCCCcCcCCHHHHHHHHhhC------CEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeE
Confidence            999998   7899999876 999999999999876      89999999999999999999999999999      9999


Q ss_pred             Eeecccccccc--ccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccC
Q psy12303        258 HVDAAWGGGLL--LSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYD  335 (480)
Q Consensus       258 ~vD~a~~~~~~--~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  335 (480)
                      |||+||+++..  ..+..++ .+ .+.++|++++++|||+++|.++|+++++++..+.......+.|+....        
T Consensus       242 ~VD~A~~~~~~p~~~~~~~~-~~-~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~--------  311 (502)
T 3hbx_A          242 HVDAASGGFIAPFLYPELEW-DF-RLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQ--------  311 (502)
T ss_dssp             EEECTTGGGTHHHHCTTCCC-ST-TSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCE--------
T ss_pred             EEECCccchhhhhhCccccc-cc-CCCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCC--------
Confidence            99999998764  2333333 22 256899999999999999999999999988766444434455654321        


Q ss_pred             CCCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-CceeEEEEEeecCccCCCc
Q psy12303        336 TGDKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-PEMVNVSFWYLPTRVRNMP  413 (480)
Q Consensus       336 ~~~~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~  413 (480)
                       ..+++.++|+. .++++|++++.+|.+++.+++++..+++++|.+.|++ +++++++.+ +..++++|++.+..  +  
T Consensus       312 -~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~~~~~v~f~~~~~~--~--  385 (502)
T 3hbx_A          312 -PTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEK-TERFNIVSKDEGVPLVAFSLKDSS--C--  385 (502)
T ss_dssp             -EECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCEEECSCSSSSSEEEEEESSCS--S--
T ss_pred             -CCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEeCCCCceEEEEEecCCC--c--
Confidence             12334466665 6789999999999999999999999999999999999 888999876 78889999875321  0  


Q ss_pred             hhhHHHHhhhhhHHHHHHHHhcccEEEeeeee---CCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        414 HEKRLNILGEITPILKGRMMQAGTMMVGYQPL---NDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       414 ~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~---~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                             ++  ..++.++|.++|+++......   .+ ..++|++ ++..+|++|++.+++.|++++++
T Consensus       386 -------~~--~~~l~~~L~~~Gi~v~~~~~p~~~~~-~~~lRis-v~~~~t~edid~li~~L~~~l~~  443 (502)
T 3hbx_A          386 -------HT--EFEISDMLRRYGWIVPAYTMPPNAQH-ITVLRVV-IREDFSRTLAERLVIDIEKVMRE  443 (502)
T ss_dssp             -------CC--HHHHHHHHHTTTCBCCEEECCTTCTT-CEEEEEE-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             -------CC--HHHHHHHHHhCCcEEeeccCCcccCC-ceEEEEE-eCCCCCHHHHHHHHHHHHHHHHH
Confidence                   10  236778898999764333221   22 4689999 78889999999999999987653

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-40  Score=337.80  Aligned_cols=391  Identities=15%  Similarity=0.174  Sum_probs=299.5

Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhcc--CCccCCCCCccccccCC-CChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHH
Q psy12303         42 LDLDIPEKGLPLQKLIDDCFTTLK--YQVRTGHPMFMNQLSCG-LDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVL  118 (480)
Q Consensus        42 ~~~~~p~~~~~~~~i~~~~~~~~~--~~~~~~~p~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~  118 (480)
                      ....+|++|.+.+++++.++++..  ....+.+|+|+++...+ ......+.+.+..+.+.+...|..+|+..++|++++
T Consensus        34 ~~~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  113 (497)
T 3mc6_A           34 NFPQLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVV  113 (497)
T ss_dssp             CCSSCCSSCCCHHHHHHHHHHHHHSSCCCCGGGTCBSSSCSCCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHH
T ss_pred             cccCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCEeeecCCCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHH
Confidence            346789999999999999988765  56778899999985444 334445556666666667788888999999999999


Q ss_pred             HHHHHHhCCC--CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeE
Q psy12303        119 EKMRQIIGWQ--GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCV  196 (480)
Q Consensus       119 ~~la~~~g~~--~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~  196 (480)
                      +|+++++|++  +.++++++|||+|+..+++++++...   +..|.   +++ +|+++..+|+++.+++..+|+   +++
T Consensus       114 ~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~---~~~g~---~~~-~Vi~~~~~h~~~~~~~~~~G~---~~~  183 (497)
T 3mc6_A          114 SMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYAL---HHRGI---TEP-EIIAPVTAHAGFDKAAYYFGM---KLR  183 (497)
T ss_dssp             HHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHH---HHSCC---SSC-EEEEETTSCHHHHHHHHHSCC---EEE
T ss_pred             HHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHH---hcCCC---CCc-eEEEeCCccHHHHHHHHHcCC---eEE
Confidence            9999999998  67899999999999999999987421   11232   224 899999999999999999998   889


Q ss_pred             EeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccccc---
Q psy12303        197 EVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKK---  272 (480)
Q Consensus       197 ~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~---  272 (480)
                      .||+++ ++.+|+++|+++++++      |++|++++++|++|.++|+++|.++|++||+|+|+|+||+++...+..   
T Consensus       184 ~v~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~  257 (497)
T 3mc6_A          184 HVELDPTTYQVDLGKVKKFINKN------TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAG  257 (497)
T ss_dssp             EECBCTTTCSBCTTTTGGGCCSS------EEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTT
T ss_pred             EEecCcccCcCCHHHHHHHHhhC------CEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhc
Confidence            999987 7899999999999765      899999999999999999999999999999999999999977653110   


Q ss_pred             -ccC-cccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC-Cc
Q psy12303        273 -YRH-PRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN-DI  349 (480)
Q Consensus       273 -~~~-~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~-~~  349 (480)
                       ... +......++|++++++||++++|.++|+++++++..........+.|...         .++..++.++|.. ..
T Consensus       258 ~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~g~~~~~~~  328 (497)
T 3mc6_A          258 YKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGG---------LYGSPTLAGSRPGAIV  328 (497)
T ss_dssp             CCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTS---------CBCCSSSCSSCBHHHH
T ss_pred             ccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCC---------CcCCcCcccCCcchhH
Confidence             000 01112236899999999999999999999988875443221112222211         1123333333322 35


Q ss_pred             hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHH
Q psy12303        350 FKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILK  429 (480)
Q Consensus       350 l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~  429 (480)
                      +++|++++.++.+++++++++..++++++.+.|++.++|++++.+|..+.++|...  ...              ..++.
T Consensus       329 ~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~~~--~~~--------------~~~l~  392 (497)
T 3mc6_A          329 VGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSK--TLN--------------IHELS  392 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEEECT--TTT--------------HHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEEeCC--CCC--------------HHHHH
Confidence            67999999999999999999999999999999998228999987888888888531  110              24677


Q ss_pred             HHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        430 GRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       430 ~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.|.++|+.+...   .. ...+|++ .+ .+|++|++++++.|++++++
T Consensus       393 ~~L~~~Gi~v~~~---~~-~~~~ri~-~~-~~t~e~i~~~~~~L~~~l~~  436 (497)
T 3mc6_A          393 DRLSKKGWHFNAL---QK-PVALHMA-FT-RLSAHVVDEICDILRTTVQE  436 (497)
T ss_dssp             HHHHTTTCBCEEC---CS-SCCEEEE-CC-TTTTCTHHHHHHHHHHHHHH
T ss_pred             HHHHhCCEEEecC---CC-CCeEEEE-Ee-CCCHHHHHHHHHHHHHHHHH
Confidence            8888898544322   12 3578999 44 67999999999999987653

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=100.00  E-value=6.4e-39  Score=328.21  Aligned_cols=390  Identities=17%  Similarity=0.202  Sum_probs=297.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHhhc-cCCccCCCCCccccccC-CCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHH
Q psy12303         43 DLDIPEKGLPLQKLIDDCFTTL-KYQVRTGHPMFMNQLSC-GLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK  120 (480)
Q Consensus        43 ~~~~p~~~~~~~~i~~~~~~~~-~~~~~~~~p~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~  120 (480)
                      ...+|++|.+.+++++++++.+ .....|.+++|++++.. ...+...+.+.+....+.+...+..+|...++|.++++|
T Consensus        68 ~~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~  147 (514)
T 3mad_A           68 HARLPRAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAM  147 (514)
T ss_dssp             CSSCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHH
Confidence            3567899999999999998875 34446888999988654 345566777888888888888888899999999999999


Q ss_pred             HHHHhCCCC--CCe--EECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeE
Q psy12303        121 MRQIIGWQG--GDS--ILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCV  196 (480)
Q Consensus       121 la~~~g~~~--~~~--~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~  196 (480)
                      +++++|++.  .++  ++|+|||+||..++++++...   .+..|.   + +.+|+++..+|+++.+++..+|+   +++
T Consensus       148 la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g---~~~~g~---~-~d~Vi~~~~~~~~~~~~~~~~G~---~v~  217 (514)
T 3mad_A          148 TAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWA---RATKGI---T-APEAVVPVSAHAAFDKAAQYFGI---KLV  217 (514)
T ss_dssp             HHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHH---HHHHCC---S-SCEEEEETTSCTHHHHHHHHHTC---EEE
T ss_pred             HHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHh---hhhcCC---C-CCeEEEeCccchHHHHHHHHcCC---eeE
Confidence            999999973  455  999999999999999998741   111232   2 23899999999999999999998   789


Q ss_pred             EeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccc-cccc-
Q psy12303        197 EVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLS-KKYR-  274 (480)
Q Consensus       197 ~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~-~~~~-  274 (480)
                      .||+++++.+|+++|+++++++      +++|++++++|++|.++|+++|.++|++||+|+|+|+||+++..+. .... 
T Consensus       218 ~v~~~~~~~~d~~~Le~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~  291 (514)
T 3mad_A          218 RTPLDADYRADVAAMREAITPN------TVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGY  291 (514)
T ss_dssp             EECBCTTSCBCHHHHHHHCCTT------EEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTC
T ss_pred             EeeeCCCCCCCHHHHHHHhccC------CEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCC
Confidence            9999999999999999999765      8999999999999999999999999999999999999999876521 0000 


Q ss_pred             -C-cccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC-CchH
Q psy12303        275 -H-PRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN-DIFK  351 (480)
Q Consensus       275 -~-~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~-~~l~  351 (480)
                       . +......++|++++++||++++|.++|+++++++............|....         +...++.+++.. ..++
T Consensus       292 ~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~gs~~~~~~~a  362 (514)
T 3mad_A          292 PVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGL---------YFSPTFAGSRPGALSAT  362 (514)
T ss_dssp             CCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTCS---------EEESSSCSSCCHHHHHH
T ss_pred             CCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCCc---------ccCCccCCCCchHHHHH
Confidence             0 011123378999999999999899999999988765432211111111100         011223334433 3578


Q ss_pred             HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHH
Q psy12303        352 LWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGR  431 (480)
Q Consensus       352 ~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~  431 (480)
                      +|++++.++.+++++++++..++++++.+.|++ +++++++.++ .+.+.|.  .....              ..++.++
T Consensus       363 ~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~-~~~~~~~--~~~~~--------------~~~l~~~  424 (514)
T 3mad_A          363 AWAAMLSLGEEGYLDATRRILQAADRLKAGVRA-IPSLKILGDP-LWVIAVA--SDELN--------------IYQVMEE  424 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCEESSCC-SSEEEEE--CSSSC--------------HHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh-CCCeEEeCCC-eEEEEEe--CCCCC--------------HHHHHHH
Confidence            999999999999999999999999999999999 8999987655 3444442  22111              2467788


Q ss_pred             HHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        432 MMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       432 l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      |.++|+.+ .  .... .+++|+++.+..+++++|+++++.|++++++
T Consensus       425 L~~~Gi~v-~--g~~~-~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~  468 (514)
T 3mad_A          425 MAGRGWRL-N--GLHR-PPAFHVALTLRHTEPGVVDRFLADLQDAVAQ  468 (514)
T ss_dssp             HHTTTCBC-E--EETT-TTEEEEECCGGGGSTTHHHHHHHHHHHHHHH
T ss_pred             HHhcCCEe-c--cCCC-CCeEEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence            88888654 2  2222 4689999666778889999999999987653

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=1.8e-37  Score=306.97  Aligned_cols=385  Identities=19%  Similarity=0.216  Sum_probs=294.6

Q ss_pred             CCCCCCCCCHHHHHHHHHhhccCCccCCCCCccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHH
Q psy12303         44 LDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQ  123 (480)
Q Consensus        44 ~~~p~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~  123 (480)
                      ..+|+.+.+.+++++.++++......+.+|.|+++..+++.+. + .+.+...+..+...+...+...+++.++++++++
T Consensus         3 ~~lp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-v-~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~   80 (397)
T 3f9t_A            3 RNMQEKGVSEKEILEELKKYRSLDLKYEDGNIFGSMCSNVLPI-T-RKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGS   80 (397)
T ss_dssp             CSCCSSCCCHHHHHHHHHHHHTTSCCGGGTCBCSCSCCCCCTH-H-HHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEecCCCcHH-H-HHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHH
Confidence            3589999999999999999888777888999999997776554 3 3556666655444455566778999999999999


Q ss_pred             HhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCC
Q psy12303        124 IIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKR  203 (480)
Q Consensus       124 ~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~  203 (480)
                      ++|+++.++++|+|||+|+..++.+++..... .+..|....+|+ .|+++..+|+++..++..+|.   +++.+|.+++
T Consensus        81 ~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~-~~~~~~~~~~gd-~vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~  155 (397)
T 3f9t_A           81 LLNNKDAYGHIVSGGTEANLMALRCIKNIWRE-KRRKGLSKNEHP-KIIVPITAHFSFEKGREMMDL---EYIYAPIKED  155 (397)
T ss_dssp             HTTCTTCEEEEESCHHHHHHHHHHHHHHHHHH-HHHTTCCCCSSC-EEEEETTCCTHHHHHHHHHTC---EEEEECBCTT
T ss_pred             HhCCCCCCEEEecCcHHHHHHHHHHHHHHHHh-hhhhcccCCCCe-EEEECCcchhHHHHHHHHcCc---eeEEEeeCCC
Confidence            99998888999999999999999998764110 111222222445 899999999999999999998   8899999989


Q ss_pred             CCCCHHHHHHHHHH-HHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccccccc-------C
Q psy12303        204 GRLIPSELERLVLE-RKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYR-------H  275 (480)
Q Consensus       204 ~~~d~~~L~~~i~~-~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~-------~  275 (480)
                      +.+|+++|++++++ .      +++|++++++|++|.+.|+++|.++|++||+++|+|++|+++.+......       .
T Consensus       156 ~~~d~~~l~~~i~~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~  229 (397)
T 3f9t_A          156 YTIDEKFVKDAVEDYD------VDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNY  229 (397)
T ss_dssp             SSBCHHHHHHHHHHSC------CCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCC
T ss_pred             CcCCHHHHHHHHhhcC------CeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccc
Confidence            99999999999987 4      88999999999999999999999999999999999999998765332110       0


Q ss_pred             cccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC-CCchHHHH
Q psy12303        276 PRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-NDIFKLWL  354 (480)
Q Consensus       276 ~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~  354 (480)
                      +..... ++|++++++||++++|.++|+++++++........ ..+|+.....          .....++. ...+++++
T Consensus       230 ~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~~~a  297 (397)
T 3f9t_A          230 KFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYKRYLDV-DAPYLTETRQ----------ATILGTRVGFGGACTYA  297 (397)
T ss_dssp             CCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGGGGTCE-ECTTSSSSEE----------CSSCSSCCSHHHHHHHH
T ss_pred             cccccc-cCCeEEEccccccCCCCCceEEEEeCHHHHHhhcc-CCccccCCCc----------cccccccccchHHHHHH
Confidence            011112 67999999999998899999999988765543221 1333322110          01112222 25677888


Q ss_pred             HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh
Q psy12303        355 QWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ  434 (480)
Q Consensus       355 ~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~  434 (480)
                      ++..++..+++++.++..++++++.+.|++ . +++++.++..+.++|....                  ..++.+.|.+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~  357 (397)
T 3f9t_A          298 VLRYLGREGQRKIVNECMENTLYLYKKLKE-N-NFKPVIEPILNIVAIEDED------------------YKEVCKKLRD  357 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCCSSSEEEEECTT------------------HHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-C-CCEEEcCCCccEEEEEeCC------------------HHHHHHHHHh
Confidence            888888889999999999999999999999 6 8887777777777764321                  1356788888


Q ss_pred             cccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        435 AGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       435 ~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      +|+.+ .+..  . .+++|++ ++..+|++|+++++++|+++++
T Consensus       358 ~gi~v-~~~~--~-~~~~Ri~-~~~~~~~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          358 RGIYV-SVCN--C-VKALRIV-VMPHIKREHIDNFIEILNSIKR  396 (397)
T ss_dssp             TTCBC-EECS--S-SSEEEEE-CCTTCCHHHHHHHHHHHHHHC-
T ss_pred             CCeEE-eccC--C-CCEEEEE-EcCCCCHHHHHHHHHHHHHhhC
Confidence            88543 3321  1 4799999 7788899999999999998865

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=100.00  E-value=1.7e-36  Score=305.17  Aligned_cols=368  Identities=13%  Similarity=0.082  Sum_probs=265.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHhhccCCccCCCCCccccccCCCChHHhHHHHHHH----HcCc----------CCcchhcCh
Q psy12303         43 DLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIA----TANT----------NMFTYEIAP  108 (480)
Q Consensus        43 ~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~----~~~~----------~~~~~~~~~  108 (480)
                      ...+|++|.+.+++.+.+++....    ....|+++..+++.+..++..+...    +.+.          +. .|..+|
T Consensus        55 ~~~lp~~g~~~~~i~~~~~~~~~~----~~~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  129 (456)
T 2z67_A           55 HRKIPENGIDDEKIKLFLKFLSMM----DTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQP-KASGAS  129 (456)
T ss_dssp             HCSCCSSCCCHHHHHHHHHHHHTT----BGGGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCT-TBHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHhc----cccccccccccccccccccccccCccccccCCCccHHHHHHhhCc-ccccCc
Confidence            357899999999988877765432    1236888877766666555433321    1121          22 344556


Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCeEECCChh-HHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH
Q psy12303        109 VFILMETVVLEKMRQIIGWQGGDSILAPGGS-ISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV  187 (480)
Q Consensus       109 ~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt-~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~  187 (480)
                      ...++++++++++++++|+++. +++|+||| .+|..++.+++...            +++ .|+++..+|+++.++++.
T Consensus       130 ~~~~~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~~~------------~~~-~vi~~~~~h~s~~~~~~~  195 (456)
T 2z67_A          130 IMYALTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKY------------GSN-VVIYPYASHKSPIKAVSF  195 (456)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHHHH------------CCC-EEEEECCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHHhc------------CCC-EEEEECCCcHHHHHHHHH
Confidence            7889999999999999999876 99999999 67777887765420            123 677777899999999999


Q ss_pred             cCCCCCCeEEeeC---CCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccc
Q psy12303        188 CGLGTDNCVEVPS---DKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWG  264 (480)
Q Consensus       188 ~g~~~~~v~~v~~---~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~  264 (480)
                      .|+   +++.++.   ++++.+|+++|+++|+....++ ++++|++++++|++|.++|+++|.++|+++|+|+|||+||+
T Consensus       196 ~G~---~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~-~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~  271 (456)
T 2z67_A          196 VGM---NMRLVETVLDGDRVYVPVEDIENAIKKEIELG-NRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYA  271 (456)
T ss_dssp             TTC---EEEEECCEEETTEEECCHHHHHHHHHHHHHTT-CCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTT
T ss_pred             cCC---CceEEEEeccCCCCCcCHHHHHHHHHHHhhCC-CeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcch
Confidence            988   7777776   6778999999999994321111 48889999999999999999999999999999999999998


Q ss_pred             cccc-ccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccC
Q psy12303        265 GGLL-LSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQC  343 (480)
Q Consensus       265 ~~~~-~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  343 (480)
                      .... ..+.... .+.+  ++|++++|+|||+++|.++|++++++++.+....   +.|....         .       
T Consensus       272 ~~~~g~~~~~~~-~~~~--~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~---~~~~g~~---------~-------  329 (456)
T 2z67_A          272 IQNNYYLEKLKK-AFKY--RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEIS---LSYPGRA---------S-------  329 (456)
T ss_dssp             TTCHHHHHHHHH-HHTS--CCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHH---TTSCSCB---------C-------
T ss_pred             HHHHHhhHHHHH-hhCC--CCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcC---cCCCCCC---------C-------
Confidence            7665 2222211 2232  6899999999999999999999998776655431   2222100         0       


Q ss_pred             CCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC---CeEEecCCceeEEEEEeecCccCCCchhhHHHH
Q psy12303        344 GRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD---KFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNI  420 (480)
Q Consensus       344 ~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~---g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~  420 (480)
                        ...++++|+++..++.++++++.++..++++++.+.|++ .+   |+.++ +|. +.++|.+.....           
T Consensus       330 --~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~g~~v~-~~~-~~v~~~~~~~~~-----------  393 (456)
T 2z67_A          330 --ATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLND-LSKKTGGKFL-DVE-SPIASCISVNSD-----------  393 (456)
T ss_dssp             --SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSSCCBC-CCC-CSSEEEEECSSC-----------
T ss_pred             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccCCEec-CCC-CeEEEEEecccH-----------
Confidence              012678999999899999999999999999999999999 75   87665 444 777776521110           


Q ss_pred             hhhhhHHHHHHHHhcccEEEeee--------e---eCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        421 LGEITPILKGRMMQAGTMMVGYQ--------P---LNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       421 l~~~~~~i~~~l~~~g~~~~~~~--------~---~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                          ..++.++|.++|...+...        .   ... .+++|++ .+..+|++||++++++|++++
T Consensus       394 ----~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~-~~~vr~s-~~~~~t~eeid~~l~~L~~~~  455 (456)
T 2z67_A          394 ----PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYT-HDYIVMN-AAIGVRTEDIVNSVSKLEKIL  455 (456)
T ss_dssp             ----HHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCS-CCEEEEE-CCTTCCHHHHHHHHHHHHTC-
T ss_pred             ----HHHHHHHHHHcCCCcceEEeecCccccccccccC-cchhhhh-hhcCCCHHHHHHHHHHHHHHh
Confidence                1245566767763111110        0   011 3689999 888999999999999998864

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=100.00  E-value=1.5e-35  Score=289.78  Aligned_cols=377  Identities=14%  Similarity=0.111  Sum_probs=261.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHhhccC-CccCC-----------------CCCccccccCCCChHHhHHHHHHHHcCcCCcch
Q psy12303         43 DLDIPEKGLPLQKLIDDCFTTLKY-QVRTG-----------------HPMFMNQLSCGLDVVSMAGEWLIATANTNMFTY  104 (480)
Q Consensus        43 ~~~~p~~~~~~~~i~~~~~~~~~~-~~~~~-----------------~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  104 (480)
                      ...+|++|.+.++|...++++-.- ..++.                 .|+||+++.+.    ++.++++..    +. .|
T Consensus        20 ~~~~p~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv~~~~~~~r~~g~~hg~----~~~~d~l~~----~~-~~   90 (450)
T 3bc8_A           20 QGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGI----GRSGDISAV----QP-KA   90 (450)
T ss_dssp             HCCCCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCB----CC-----------CC-SB
T ss_pred             hccCCccCCCHHHHHHHHHHHhhCCCCccccccccCcccceEecccccCCccceecch----hHHHHHHHh----Cc-cc
Confidence            367999999999999998775321 11221                 27899988776    455566666    44 67


Q ss_pred             hcChhhHHHHHHHHHHHHHHhCCCCCC-eEECCChh-HHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH
Q psy12303        105 EIAPVFILMETVVLEKMRQIIGWQGGD-SILAPGGS-ISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR  182 (480)
Q Consensus       105 ~~~~~~~~~e~~~~~~la~~~g~~~~~-~~~t~ggt-~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~  182 (480)
                      ..+|+...+|+.+..|+.+++|+|... +++++|+| .++.+++.++|....           +++ .|+++..+|.|+.
T Consensus        91 ~~~~~~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~-----------~~~-~viv~r~aHkSv~  158 (450)
T 3bc8_A           91 AGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRP-----------KAK-YIIWPRIDQKSCF  158 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCT-----------TCC-EEEEECCCCHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhc-----------CCC-EEEEECCcHHHHH
Confidence            888999999999999999999998754 48999998 778878877776311           124 6777788999999


Q ss_pred             HHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecc
Q psy12303        183 SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAA  262 (480)
Q Consensus       183 ~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a  262 (480)
                      +++.++|+++..+..++.++.+.||+++|+++|+++..  ..+.+|+.+.+++..|.++||++|+++|++||+|+|||+|
T Consensus       159 kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~--~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A  236 (450)
T 3bc8_A          159 KSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGP--EHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNA  236 (450)
T ss_dssp             HHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCG--GGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECT
T ss_pred             HHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCC--CCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECC
Confidence            99999999543333333366789999999999988631  1367777777766678999999999999999999999999


Q ss_pred             ccccccccccccCcccCCC--CCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcc
Q psy12303        263 WGGGLLLSKKYRHPRLTGI--ERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKV  340 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~--~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  340 (480)
                      ||+...+.....   ..++  +++|+++.|+|||+++|.+++++++++++.+.....   .|....              
T Consensus       237 ~G~~~~~~~~l~---~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~---~~~g~~--------------  296 (450)
T 3bc8_A          237 YGLQSSKCMHLI---QQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK---MYPGRA--------------  296 (450)
T ss_dssp             TTTTCHHHHHHH---HHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH---HSCSCB--------------
T ss_pred             CchhhhhhHhHH---HHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHH---HhhcCC--------------
Confidence            998765433211   1122  489999999999999999999999998877655422   222100              


Q ss_pred             ccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC---CeEEecCCcee-EEEEEeecCccCCCchhh
Q psy12303        341 IQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD---KFYLILEPEMV-NVSFWYLPTRVRNMPHEK  416 (480)
Q Consensus       341 ~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~---g~~~~~~~~~~-~v~f~~~~~~~~~~~~~~  416 (480)
                        .+  ..++.+|+++..+|.+++.+.+++..++++++++.|++ ++   +++++..+... ..++...  .+......+
T Consensus       297 --s~--SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~-~~~~~g~~~l~~~~~~~~~~~~l~--~~~~~~~~D  369 (450)
T 3bc8_A          297 --SA--SPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKK-LAEAHNERLLQTPHNPISLAMTLK--TIDGHHDKA  369 (450)
T ss_dssp             --CS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCBCCCTTCSSEEEEECT--TTSSSSSCH
T ss_pred             --cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHhcCceecCCccCCCcceeecc--cccccccCC
Confidence              00  13589999999999999999999999999999999998 88   88887654322 1222110  000000000


Q ss_pred             HHHHhhhhhHHHHHHHHh---cccEEE----------eeeee------CCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        417 RLNILGEITPILKGRMMQ---AGTMMV----------GYQPL------NDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       417 ~~~~l~~~~~~i~~~l~~---~g~~~~----------~~~~~------~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                          .    .++.-.+..   +|.-+.          ..-..      .....++-+. ++...+++|+++++++|+++.
T Consensus       370 ----~----tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~-~sig~~~~di~~l~~~L~~~~  440 (450)
T 3bc8_A          370 ----V----TQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAA-AAIGMKMQDVDLFIKRLDKCL  440 (450)
T ss_dssp             ----H----HHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEE-CCTTCCHHHHHHHHHHHHHHH
T ss_pred             ----C----ceeEEEecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEE-ecCCCCHHHHHHHHHHHHHHH
Confidence                0    122222222   232222          10000      0114566666 889999999999999999875


Q ss_pred             c
Q psy12303        478 H  478 (480)
Q Consensus       478 ~  478 (480)
                      +
T Consensus       441 ~  441 (450)
T 3bc8_A          441 N  441 (450)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=100.00  E-value=7.9e-32  Score=272.51  Aligned_cols=394  Identities=16%  Similarity=0.137  Sum_probs=266.5

Q ss_pred             HHHHHHhcCCCCCCCCCCHHHHHHHHHhhccCCcc-CCCCCccccccCCCChHHhHHHHHHHHcCcCCcchh-cChhhHH
Q psy12303         35 PAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVR-TGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYE-IAPVFIL  112 (480)
Q Consensus        35 p~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~  112 (480)
                      |++++...+..+|  +.+..++++.++++...+.. ..+..|++ ...+...+.++.++...+.+.+.+... .+++..+
T Consensus        31 p~~~~~~~~~~lp--~~~e~~~~~~~~~l~~~~~~~~~~~~~lg-~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~  107 (474)
T 1wyu_B           31 PKEHLREVPPRLP--EVDELTLVRHYTGLSRRQVGVDTTFYPLG-SCTMKYNPKLHEEAARLFADLHPYQDPRTAQGALR  107 (474)
T ss_dssp             CGGGBCSSCCCCC--CCCHHHHHHHHHHHHTTCCCTTTSCCCBT-TTCCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHH
T ss_pred             CHHHhccCCCCCC--CCCHHHHHHHHHHHHhCCCCcccCccccc-cccccCCHHHHHHHHHHHHhcCCCCchhhChHHHH
Confidence            3444433356678  78899999999888765543 33456666 323333345554555443333333333 4788889


Q ss_pred             HHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCC
Q psy12303        113 METVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGT  192 (480)
Q Consensus       113 ~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~  192 (480)
                      ++.++++++++++|++. .+++++|||+|+..++++++...    ...|..  +++.+|+++..+|+++..++...|+  
T Consensus       108 l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~~al~~~~~~~----~~~Gd~--~~r~~Vlv~~~~h~~~~~~~~~~G~--  178 (474)
T 1wyu_B          108 LMWELGEYLKALTGMDA-ITLEPAAGAHGELTGILIIRAYH----EDRGEG--RTRRVVLVPDSAHGSNPATASMAGY--  178 (474)
T ss_dssp             HHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHHHHH----HHTTCT--TTCCEEEEETTSCTHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHHCCCc-eeecChHHHHHHHHHHHHHHHHH----HhcCCc--cCCCEEEEeCCcChhhHHHHHHCCC--
Confidence            99999999999999976 46688999999999998886421    112320  1123788899999999999999998  


Q ss_pred             CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccc-cChHHHHHHHHHcCcEEEeecccccccc-cc
Q psy12303        193 DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAF-DPIEEIADICQKYNMWLHVDAAWGGGLL-LS  270 (480)
Q Consensus       193 ~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~-~~l~~I~~i~~~~~~~l~vD~a~~~~~~-~~  270 (480)
                       +++.||+++++.+|+++|+++++++      +++|+++++ |++|.+ +|+++|.++|++||+++|+|++|+.+.. ..
T Consensus       179 -~vv~v~~~~~~~~d~~~L~~~i~~~------t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~  250 (474)
T 1wyu_B          179 -QVREIPSGPEGEVDLEALKRELGPH------VAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWA  250 (474)
T ss_dssp             -EEEEECBCTTSSBCHHHHHHHCSTT------EEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTC
T ss_pred             -EEEEecCCCCCCcCHHHHHHhhCCC------ceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCC
Confidence             8899999888999999999999764      899999998 579999 7999999999999999999999987653 22


Q ss_pred             ccccCcccCCCCCCccceeCccccCCCcc-----cceEEEEeCchhhHhhhcCCcccccccccccCcc----cCCCCccc
Q psy12303        271 KKYRHPRLTGIERADSVTWNPHKLMGTLL-----QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVR----YDTGDKVI  341 (480)
Q Consensus       271 ~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-----~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~  341 (480)
                      +....       ++|++++|+||++++|.     ++|++++++. ......   ..+.......+...    ...+....
T Consensus       251 ~~~~~-------g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~-l~~~l~---~~~~~~~g~~~~~~~~~~~~~~~~~~  319 (474)
T 1wyu_B          251 RPGDM-------GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH-LAPYLP---VPLVERGEEGFYLDFDRPKSIGRVRS  319 (474)
T ss_dssp             CHHHH-------TCSEEECCTTTTTCCCCTTSCCCCCCEEECGG-GGGGCC---SCEEEECSSCEEEECCCTTCCCCSSS
T ss_pred             CcccC-------CCcEEEEeCccccccCCCCCCCCeEEEEEcHH-HHHhCC---CCeeeccCCeeEecccCcccCccccc
Confidence            11122       68999999999999885     6899998764 333221   01110000000000    00000000


Q ss_pred             cCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC-ceeEEEEEeecCccCCCchhhHHHH
Q psy12303        342 QCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP-EMVNVSFWYLPTRVRNMPHEKRLNI  420 (480)
Q Consensus       342 ~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~  420 (480)
                      .++......++|..+..+|.+++++..++..++++++.+.|++ . |+++..++ ....+++.+ +..   .+       
T Consensus       320 ~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~-~~~---~~-------  386 (474)
T 1wyu_B          320 FYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-K-GYRVPYDGPSMHEFVAQP-PEG---FR-------  386 (474)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCBCSSCSSCCSCEEEBC-STT---CC-------
T ss_pred             CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-CcEecCCCCcceEEEEEc-CCC---CC-------
Confidence            0111123456667777778899999999999999999999999 6 88874332 222133322 111   10       


Q ss_pred             hhhhhHHHHHHHHhcccEEEeeeeeC-CcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        421 LGEITPILKGRMMQAGTMMVGYQPLN-DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       421 l~~~~~~i~~~l~~~g~~~~~~~~~~-~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                          ..++.++|.++|+.. ....+. ...+++|++ ++..+|++++++++++|+++++
T Consensus       387 ----~~~l~~~L~~~Gi~~-~~~~~~~~~~~~lRis-~~~~~t~e~id~~~~~L~~~~~  439 (474)
T 1wyu_B          387 ----ALDLAKGLLELGFHP-PTVYFPLIVKEALMVE-PTETEAKETLEAFAEAMGALLK  439 (474)
T ss_dssp             ----HHHHHHHHHHTTCCC-CEESCSTTSTTCEEEC-CCTTSCHHHHHHHHHHHHHHHT
T ss_pred             ----HHHHHHHHHHCCccc-cccccccccCCEEEEE-eecCCCHHHHHHHHHHHHHHHH
Confidence                245777888888653 211121 114789999 7778899999999999998765

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=100.00  E-value=2.9e-31  Score=263.98  Aligned_cols=356  Identities=13%  Similarity=0.089  Sum_probs=245.8

Q ss_pred             CCCCCccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCC-eEECCChhHHHHHHHHH
Q psy12303         70 TGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGD-SILAPGGSISNLYAFLA  148 (480)
Q Consensus        70 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~-~~~t~ggt~a~~~al~~  148 (480)
                      ..+|.++.+.+++..++..+.+.+..   .....  .++....+..++++++++++|.+... +++++|||+|+..++.+
T Consensus         9 ~~~~~~~~~~pgp~~~~~~v~~a~~~---~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~   83 (411)
T 3nnk_A            9 LNPPSRLLMGPGPINADPRVLRAMSS---QLIGQ--YDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVS   83 (411)
T ss_dssp             CCCCCCEEESSSCCCCCHHHHHHHTS---CCCCT--TCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHH
T ss_pred             cCCccceeecCCCCCCCHHHHHHhhc---ccccc--ccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHH
Confidence            45677777777776655444344432   21111  24555677888999999999997655 78889999999999988


Q ss_pred             HHHhcCchhHhcCCCccCCceEEEecCCCchh--HHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccE
Q psy12303        149 ARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS--VRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPF  226 (480)
Q Consensus       149 ~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s--~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~  226 (480)
                      +..              ||+ .|+++..+|++  +...+...|.   +++.+|.+.++.+|+++|++++++.     +++
T Consensus        84 ~~~--------------~gd-~Vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l~~~i~~~-----~~~  140 (411)
T 3nnk_A           84 AIR--------------PGD-KVLVPVFGRFGHLLCEIARRCRA---EVHTIEVPWGEVFTPDQVEDAVKRI-----RPR  140 (411)
T ss_dssp             HCC--------------TTC-EEEEEECSHHHHHHHHHHHHTTC---EEEEEECCTTCCCCHHHHHHHHHHH-----CCS
T ss_pred             hcC--------------CCC-EEEEecCCchHHHHHHHHHHcCC---eEEEEecCCCCCCCHHHHHHHHhhC-----CCe
Confidence            743              445 78888889988  7888888888   8899999888999999999999863     288


Q ss_pred             EEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEE
Q psy12303        227 FVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHF  306 (480)
Q Consensus       227 ~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~  306 (480)
                      +|++++++|++|.+.|+++|.++|++||+++|+|++++.+....+....       ++|++++++||++++|.++|++++
T Consensus       141 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~-------~~d~~~~s~~K~l~~~~g~g~~~~  213 (411)
T 3nnk_A          141 LLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVW-------GLDAVSAGMQKCLGGPSGTSPITL  213 (411)
T ss_dssp             EEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTT-------TCSEEECCSTTTTCCCSSEEEEEE
T ss_pred             EEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhcc-------CCcEEEecCccccCCCCceEEEEE
Confidence            9999999999999999999999999999999999999887665544333       789999999999888899999987


Q ss_pred             eCchhhHhhhcC---Ccccccccccc------cCcccCCC-------Ccccc-CCCC-CCchHHHHHHHHhcHHHHHHHH
Q psy12303        307 KQDGLLISCNQM---SAEYLFMQDKL------YDVRYDTG-------DKVIQ-CGRH-NDIFKLWLQWRAKGDEGFEKQI  368 (480)
Q Consensus       307 ~~~~~~~~~~~~---~~~~l~~~~~~------~~~~~~~~-------~~~~~-~~r~-~~~l~~~~~l~~~g~~~~~~~~  368 (480)
                      ++. ........   .+.|.......      ....++..       ..... .+.. ....++..++..+..++++++.
T Consensus       214 ~~~-~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  292 (411)
T 3nnk_A          214 SAR-MEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGI  292 (411)
T ss_dssp             CHH-HHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             CHH-HHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHH
Confidence            654 43333221   12222111000      00000000       00000 1111 1233444556655556688999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeEEecCCc---eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeee
Q psy12303        369 DRLMELAEYMVKKIKSMPDKFYLILEPE---MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQP  444 (480)
Q Consensus       369 ~~~~~l~~~l~~~l~~~~~g~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~  444 (480)
                      ++..++++++.+.|++ . +++++.++.   ...++|.+ |....              ..++.+.|.++ |+. +.++.
T Consensus       293 ~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~-~~~~~--------------~~~l~~~l~~~~gi~-v~~g~  354 (411)
T 3nnk_A          293 ARHKLHGDALVKGIQA-M-GLETFGDLKHKMNNVLGVVI-PQGIN--------------GDQARKLMLEDFGIE-IGTSF  354 (411)
T ss_dssp             HHHHHHHHHHHHHHHH-T-TCCBCSCGGGBCSSEEEEEC-CTTCC--------------HHHHHHHHHHHHSEE-EEECC
T ss_pred             HHHHHHHHHHHHHHHH-c-CCEeCCCcccccccEEEEEC-CCCCC--------------HHHHHHHHHHhcCeE-EeCcc
Confidence            9999999999999999 4 888764432   33444433 22211              23566777776 744 43322


Q ss_pred             eCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        445 LNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       445 ~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .....+++|+++.++.++++||++++++|++++++
T Consensus       355 ~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~  389 (411)
T 3nnk_A          355 GPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNY  389 (411)
T ss_dssp             GGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHH
Confidence            11115799999447778999999999999998754

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=100.00  E-value=3.2e-31  Score=260.66  Aligned_cols=344  Identities=17%  Similarity=0.176  Sum_probs=240.4

Q ss_pred             CccccccCCCChHHhHHHHHHHHcC--cCC-cchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHH
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIATAN--TNM-FTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAAR  150 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~--~~~-~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~  150 (480)
                      .|+++..+++.++.+...+.....+  .+. ..+..+.....+.+++++++++++|++++++++|+|+|+|+..++.++.
T Consensus         2 iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~   81 (382)
T 4hvk_A            2 AYFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYA   81 (382)
T ss_dssp             CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHH
T ss_pred             EeecCCCcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhh
Confidence            4778777777777666433333211  111 1233344556778889999999999987789999999999999999886


Q ss_pred             HhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHc---CCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEE
Q psy12303        151 HKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVC---GLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFF  227 (480)
Q Consensus       151 ~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~---g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~  227 (480)
                      ...    ..      ||+ .|+++..+|+++..++..+   |.   +++.+|+++++.+|+++|+++++++      +++
T Consensus        82 ~~~----~~------~gd-~vi~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l~~~i~~~------~~~  141 (382)
T 4hvk_A           82 MRN----AR------KGK-HILVSAVEHMSVINPAKFLQKQGF---EVEYIPVGKYGEVDVSFIDQKLRDD------TIL  141 (382)
T ss_dssp             HHH----GG------GCC-EEEEETTCCHHHHHHHHHHHHTTC---EEEEECBCTTSCBCHHHHHHHCCTT------EEE
T ss_pred             hhh----cC------CCC-EEEECCCCcHHHHHHHHHHHhcCC---EEEEeccCCCCCcCHHHHHHHhccC------ceE
Confidence            310    00      445 8889999999998887765   55   8899999989999999999999765      899


Q ss_pred             EEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEe
Q psy12303        228 VNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFK  307 (480)
Q Consensus       228 v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~  307 (480)
                      |++++++|++|.+.|+++|.++|++||+ +|+|++|+.+....+....       ++|+++.|+||+++ |.|+|+++++
T Consensus       142 v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~-------~~d~~~~s~~K~~g-~~g~g~~~~~  212 (382)
T 4hvk_A          142 VSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKI-------GADMLTISSNDIYG-PKGVGALWIR  212 (382)
T ss_dssp             EECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHH-------TCSEEEEESGGGTS-CTTCEEEEEE
T ss_pred             EEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhc-------CCCEEEEeHHHhcC-CCceEEEEEc
Confidence            9999999999999999999999999999 9999999887665544333       68999999999755 6789999988


Q ss_pred             CchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12303        308 QDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD  387 (480)
Q Consensus       308 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~  387 (480)
                      +...+       ..++......  .....+...     .....++..++.. ..+++++..++..++++++.+.|++ ++
T Consensus       213 ~~~~~-------~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~-~~  276 (382)
T 4hvk_A          213 KEAKL-------QPVILGGGQE--NGLRSGSEN-----VPSIVGFGKAAEI-TAMEWREEAERLRRLRDRIIDNVLK-IE  276 (382)
T ss_dssp             TTCCC-------CCSSCSSCTG--GGTSCSCCC-----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTT-ST
T ss_pred             CccCc-------CcccccCCCc--CccccCCcC-----HHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhc-CC
Confidence            75411       1111111000  000011000     0122233333332 3467889999999999999999999 89


Q ss_pred             CeEEecCCc---eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC-------------Cc---
Q psy12303        388 KFYLILEPE---MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN-------------DL---  448 (480)
Q Consensus       388 g~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~-------------~~---  448 (480)
                      ++++..++.   .+.++|...  ...              ..++.+.|.+.|+.+.......             +.   
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~--~~~--------------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~  340 (382)
T 4hvk_A          277 ESYLNGHPEKRLPNNVNVRFS--YIE--------------GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHE  340 (382)
T ss_dssp             TEEECSCSSSBCTTEEEEEET--TCC--------------HHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHH
T ss_pred             CeEEeCCccccCCCEEEEEEC--CCC--------------HHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChh
Confidence            999875442   234555432  111              2356677777775432211000             00   


Q ss_pred             --ccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        449 --PNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       449 --~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                        .+++|++ ++..+|++|++++++.|++++++
T Consensus       341 ~~~~~iRl~-~~~~~t~e~i~~~~~~l~~~~~~  372 (382)
T 4hvk_A          341 EAHGTLLLT-LGRYNTDEDVDRLLEVLPGVIER  372 (382)
T ss_dssp             HHHTEEEEE-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hcCCeEEEE-cCCCCCHHHHHHHHHHHHHHHHH
Confidence              3699999 77889999999999999987653

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=100.00  E-value=7.7e-31  Score=265.13  Aligned_cols=360  Identities=12%  Similarity=0.055  Sum_probs=248.9

Q ss_pred             CccccccCCCChHHh---HHHHHHHHcCcCCcchhc-ChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHH
Q psy12303         74 MFMNQLSCGLDVVSM---AGEWLIATANTNMFTYEI-APVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAA  149 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~-~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~  149 (480)
                      .|++..+.++.+..+   +.+.+..+.+.+...|.. .+....+.+++++++++++|++++++++|+|+|+++..++.++
T Consensus        69 iyld~~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~  148 (465)
T 3e9k_A           69 IYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSF  148 (465)
T ss_dssp             EECBTTTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHH
T ss_pred             EEecCCccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHh
Confidence            477776666555544   334454444433333322 2233455667899999999998889999999999999888877


Q ss_pred             HHhcCchhHhcCCCccCCceEEEecCCCchhHHH----HHHHcCCCCCC--eEEeeCCCCCCCCHHHHHHHHHHHHHCCC
Q psy12303        150 RHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS----CAAVCGLGTDN--CVEVPSDKRGRLIPSELERLVLERKAKGD  223 (480)
Q Consensus       150 ~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~----~~~~~g~~~~~--v~~v~~~~~~~~d~~~L~~~i~~~~~~~~  223 (480)
                      ...        |.   +++ +|+++..+|++...    .++..|+....  +..+|.+.++.+|+++|+++|++..   .
T Consensus       149 ~~~--------~~---~~~-~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~---~  213 (465)
T 3e9k_A          149 FKP--------TP---KRY-KILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEG---D  213 (465)
T ss_dssp             CCC--------CS---SSC-EEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHG---G
T ss_pred             ccc--------cC---CCC-EEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcC---C
Confidence            431        11   223 79999999988444    56667873211  3455777789999999999998541   1


Q ss_pred             ccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCC-Ccccce
Q psy12303        224 IPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMG-TLLQCS  302 (480)
Q Consensus       224 ~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g  302 (480)
                      ++++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+..+.+...+       ++|++++++||+++ +|.++|
T Consensus       214 ~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~-------~~D~~~~s~~K~l~~gp~~~g  286 (465)
T 3e9k_A          214 SIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDW-------GVDFACWCSYKYLNAGAGGIA  286 (465)
T ss_dssp             GEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH-------TCCEEEECSSSTTCCCTTCCC
T ss_pred             CeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhc-------CCCEEEECcccccccCCCceE
Confidence            3899999999999999999999999999999999999999998877665555       88999999999994 677889


Q ss_pred             EEEEeCchhhHhhhcCCcccccccc-ccc----CcccCCCCccccCCCC--CCchHHHHHHHHhcHHHHHHHHHHHHHHH
Q psy12303        303 TIHFKQDGLLISCNQMSAEYLFMQD-KLY----DVRYDTGDKVIQCGRH--NDIFKLWLQWRAKGDEGFEKQIDRLMELA  375 (480)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~----~~~~~~~~~~~~~~r~--~~~l~~~~~l~~~g~~~~~~~~~~~~~l~  375 (480)
                      +++++++ ..........+|..+.. ..+    ...+..+...++.+..  ....++.+++..+...+++++.++..+++
T Consensus       287 ~l~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~  365 (465)
T 3e9k_A          287 GAFIHEK-HAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLT  365 (465)
T ss_dssp             EEEECGG-GTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             EEEEcHH-HHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            9998654 33332222222222210 000    0011111112222222  23556667777766667899999999999


Q ss_pred             HHHHHHHhcCC----------CCeEEecCCc----eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEe
Q psy12303        376 EYMVKKIKSMP----------DKFYLILEPE----MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVG  441 (480)
Q Consensus       376 ~~l~~~l~~~~----------~g~~~~~~~~----~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~  441 (480)
                      +++.+.|++ .          ++++++.+..    .+.++|.+. ..                ..++.+.|.++|+++ .
T Consensus       366 ~~l~~~L~~-~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~-~~----------------~~~l~~~L~~~Gi~v-~  426 (465)
T 3e9k_A          366 GYLEYLIKH-NYGKDKAATKKPVVNIITPSHVEERGCQLTITFS-VP----------------NKDVFQELEKRGVVC-D  426 (465)
T ss_dssp             HHHHHHHHH-HCC---------CEEECSCSSGGGBCSCEEEEEC-CT----------------TCCHHHHHHTTTEEC-E
T ss_pred             HHHHHHHHh-hccccccccCCCCeEEeCCCCHhhcccEEEEEec-CC----------------HHHHHHHHHHCCEEE-e
Confidence            999999988 6          7899876442    566777543 11                124667888888543 3


Q ss_pred             eeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        442 YQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       442 ~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .   .+ ++++|+++.+.++|++||+++++.|++++++
T Consensus       427 ~---~~-~~~iRis~~~~~~t~edi~~~~~~l~~~l~~  460 (465)
T 3e9k_A          427 K---RN-PNGIRVAPVPLYNSFHDVYKFTNLLTSILDS  460 (465)
T ss_dssp             E---ET-TTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred             c---CC-CCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence            2   22 5799999448999999999999999998764

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.98  E-value=1.7e-30  Score=260.45  Aligned_cols=375  Identities=14%  Similarity=0.101  Sum_probs=245.6

Q ss_pred             CHHHHHHhcCCCCCCCCCCHHHHHHHHHhhccCCccCCCCCccccccCCC---ChHHhHHHHH--HHHc-CcCCcchhcC
Q psy12303         34 HPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGL---DVVSMAGEWL--IATA-NTNMFTYEIA  107 (480)
Q Consensus        34 ~p~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~l--~~~~-~~~~~~~~~~  107 (480)
                      -|++++.. +.++| +|.+..++++.+..+...+..    +|.++...+.   ..+..+.+.+  ..++ ..+.+..+.+
T Consensus        30 ~p~~~~~~-~~~lp-~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~  103 (438)
T 1wyu_A           30 LPKEILSP-PIDLP-EPLPEWKVLEELRRLAAQNLP----AHKAFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQPEVS  103 (438)
T ss_dssp             SCGGGSSC-CCCCC-CCCCHHHHHHHHHHHHHTSCC----CTTCCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGGGC
T ss_pred             CcHHHhcC-CCCCC-CCCCHHHHHHHHHHHHhcCcC----ccccccCCCccCCcCcHHHHHHHhcchhhhcCCCCcchhh
Confidence            46677766 78899 889999999998776543321    2333332222   2233334444  2332 2222223457


Q ss_pred             hhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHH-
Q psy12303        108 PVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAA-  186 (480)
Q Consensus       108 ~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~-  186 (480)
                      ++..++..++++++++++|.++.++++++|+|.++..++.+++..             +|+ +|+++..+|+++..++. 
T Consensus       104 ~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~-------------~gd-~Viv~~~~h~s~~~~~~~  169 (438)
T 1wyu_A          104 QGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRET-------------GRM-GVLVSQGVHPEYRAVLRA  169 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHH-------------TCC-EEEEETTSCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcC-------------CCC-EEEEcCccCHhHHHHHHH
Confidence            788889999999999999998778899999995544444443321             445 78899999999886664 


Q ss_pred             ---HcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecc-
Q psy12303        187 ---VCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAA-  262 (480)
Q Consensus       187 ---~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a-  262 (480)
                         ..|+   +++.+|. +++.+|+++    +++      +|++|+++++ |++|.+.|+++|.++|+++|+|+|+|.. 
T Consensus       170 ~a~~~G~---~v~~v~~-~~~~~d~~~----i~~------~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~  234 (438)
T 1wyu_A          170 YLEAVGA---KLLTLPL-EGGRTPLPE----VGE------EVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADP  234 (438)
T ss_dssp             HHHHTTC---EEEEECC-BTTBCCCCC----CCT------TEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCT
T ss_pred             HHHHCCC---EEEEEcC-cCCccCHHH----hCC------CeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEech
Confidence               4677   8888887 567888766    433      3899999999 9999999999999999999999997754 


Q ss_pred             ccccccccccccCcccCCCCCCccceeCccc-----cCCCcccceEEEEeCchhhHhhhcCCcccccccccccC----c-
Q psy12303        263 WGGGLLLSKKYRHPRLTGIERADSVTWNPHK-----LMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYD----V-  332 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK-----~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~-  332 (480)
                      ++.+.+..+ ..+       ++|++++|+||     |+++| ++|++++++. .....    +.++.+......    . 
T Consensus       235 ~a~g~~~~~-~~~-------g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~-~~~~l----~~~~~g~~~~~~~~~~~~  300 (438)
T 1wyu_A          235 LSLGVLKPP-GAY-------GADIAVGDGQSLGLPMGFGGP-HFGFLATKKA-FVRQL----PGRLVSETVDVEGRRGFI  300 (438)
T ss_dssp             TGGGTBCCH-HHH-------TCSEEEEECTTTTCCCGGGCS-CCEEEEECGG-GGGGC----CSCCEEEEEBTTSCEEEE
T ss_pred             hhccCcCCC-ccC-------CCCEEEECCcccCCCccCCCC-CeeEEEEcHH-HHHhC----CCceeccccccCCCccee
Confidence            433333222 223       78999999888     66777 8999987654 33332    122111000000    0 


Q ss_pred             ----------ccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-CceeEEE
Q psy12303        333 ----------RYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-PEMVNVS  401 (480)
Q Consensus       333 ----------~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~~~~~v~  401 (480)
                                +...+.+++.......++.++..+..++.++++++.++..++++++.+.|++ ++|++++.+ +....++
T Consensus       301 ~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~  379 (438)
T 1wyu_A          301 LTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLE-VPGVRPFTPKPFFNEFA  379 (438)
T ss_dssp             ECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTCEECSCSSBCSEEE
T ss_pred             eeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEECCCCCeEEEEE
Confidence                      0011111110000011222333367778889999999999999999999999 889998754 2333344


Q ss_pred             EEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEE-EeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        402 FWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMM-VGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       402 f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~-~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      +.. +  ..              ..++.++|.++|+.+ +..+...+ .+++|++ .+..+|++||++++++|++++
T Consensus       380 ~~~-~--~~--------------~~~~~~~L~~~gi~v~~~~~~~~~-~~~lRis-~~~~~t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          380 LAL-P--KD--------------PEAVRRALAERGFHGATPVPREYG-ENLALFA-ATELHEEEDLLALREALKEVL  437 (438)
T ss_dssp             EEC-S--SC--------------HHHHHHHHHHTTCCCCEECCTTSC-SSEEEEE-CCTTCCHHHHHHHHHHHHHHC
T ss_pred             EeC-C--CC--------------HHHHHHHHHHCCceeccccccccC-CCeEEEE-ecccCCHHHHHHHHHHHHHHh
Confidence            432 1  00              245778888888544 12222223 5799999 778999999999999998875

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.98  E-value=5.1e-31  Score=262.61  Aligned_cols=356  Identities=12%  Similarity=0.107  Sum_probs=239.2

Q ss_pred             CCCCCccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeE-ECCChhHHHHHHHHH
Q psy12303         70 TGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSI-LAPGGSISNLYAFLA  148 (480)
Q Consensus        70 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~-~t~ggt~a~~~al~~  148 (480)
                      ...|.++.+.+++...+..+.+.+.   +.....  ..+...++..++++++++++|.++..++ +++|||+|+..++.+
T Consensus         7 ~~~~~~~~~~p~p~~~~~~v~~a~~---~~~~~~--~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~   81 (416)
T 3isl_A            7 LCTPLRTIMTPGPVEVDPRVLRVMS---TPVVGQ--FDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLAS   81 (416)
T ss_dssp             CCCCCCEECSSSSCCCCHHHHHHTT---SCCCCT--TSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHH
T ss_pred             cCcccceeecCCCcCcCHHHHHHhc---ccCCCC--ccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHH
Confidence            3456667776766555433333332   222222  2344577888999999999999876565 889999999999887


Q ss_pred             HHHhcCchhHhcCCCccCCceEEEecCCCchh--HHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccE
Q psy12303        149 ARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS--VRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPF  226 (480)
Q Consensus       149 ~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s--~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~  226 (480)
                      +..              ||+ .|+++...|++  +..+++..|.   +++.+|.+.++.+|+++|++++++.     +++
T Consensus        82 l~~--------------~gd-~Vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l~~~i~~~-----~~~  138 (416)
T 3isl_A           82 VIE--------------PED-DVLIPIYGRFGYLLTEIAERYGA---NVHMLECEWGTVFDPEDIIREIKKV-----KPK  138 (416)
T ss_dssp             HCC--------------TTC-EEEEEESSHHHHHHHHHHHHTTC---EEEEEECCTTCCCCHHHHHHHHHHH-----CCS
T ss_pred             hcC--------------CCC-EEEEecCCcccHHHHHHHHhcCC---eeEEEecCCCCCCCHHHHHHHHhhC-----CCc
Confidence            733              556 78888889988  7778888888   8899999999999999999999853     188


Q ss_pred             EEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEE
Q psy12303        227 FVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHF  306 (480)
Q Consensus       227 ~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~  306 (480)
                      +|++++++|++|.+.|+++|.++|++||+++|+|++|+.+....+....       ++|++++++||++++|.|+|++++
T Consensus       139 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~-------~~d~~~~s~~K~l~g~~g~g~~~~  211 (416)
T 3isl_A          139 IVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEW-------KIDAAIGGTQKCLSVPSGMAPITY  211 (416)
T ss_dssp             EEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTT-------TCSEEECCSSSTTCCCSSEEEEEE
T ss_pred             EEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhc-------CCCEEEecCccccCCCCCeEEEEE
Confidence            9999999999999999999999999999999999999877665544334       789999999999888999999987


Q ss_pred             eCchhhHhhhcCC---ccc--------ccccccccCcccCC-------CCccccC-CCC-CCchHHHHHHHHhcHHHHHH
Q psy12303        307 KQDGLLISCNQMS---AEY--------LFMQDKLYDVRYDT-------GDKVIQC-GRH-NDIFKLWLQWRAKGDEGFEK  366 (480)
Q Consensus       307 ~~~~~~~~~~~~~---~~~--------l~~~~~~~~~~~~~-------~~~~~~~-~r~-~~~l~~~~~l~~~g~~~~~~  366 (480)
                      +++ .........   .+|        ..+........++.       ....+.. +.. ....++..++..+...++++
T Consensus       212 ~~~-~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~  290 (416)
T 3isl_A          212 NER-VADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLET  290 (416)
T ss_dssp             CHH-HHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             CHH-HHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHH
Confidence            654 433332111   011        00000000000000       0000101 111 12334445566555556889


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeEEecCCc---eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEee
Q psy12303        367 QIDRLMELAEYMVKKIKSMPDKFYLILEPE---MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGY  442 (480)
Q Consensus       367 ~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~  442 (480)
                      +.++..++++++.+.|++  ++++++.++.   ...++|.+ +....              ..++.+.|.++ | +.+.+
T Consensus       291 ~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~~~~~~~~~-~~~~~--------------~~~l~~~L~~~~g-i~v~~  352 (416)
T 3isl_A          291 RFERHRHHEAALAAGIKA--MGLRLFGDDSCKMPVVTCVEI-PGGID--------------GESVRDMLLAQFG-IEIAS  352 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHH--TTCCBCSCGGGBCTTEEEEEC-CTTCC--------------HHHHHHHHHHHHC-EECBC
T ss_pred             HHHHHHHHHHHHHHHHHH--cCCEeccCccccCCcEEEEeC-CCCCC--------------HHHHHHHHHHhCC-EEEec
Confidence            999999999999999999  5888765432   34455543 21111              24567778776 7 44443


Q ss_pred             eeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        443 QPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       443 ~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +......+++|+++....+++++|++++++|++++++
T Consensus       353 g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~  389 (416)
T 3isl_A          353 SFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLR  389 (416)
T ss_dssp             CCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHH
Confidence            2211225799999434444455599999999988754

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.98  E-value=1.2e-30  Score=256.84  Aligned_cols=345  Identities=16%  Similarity=0.155  Sum_probs=237.1

Q ss_pred             CccccccCCCChHHhHHHHHHHHcC--cCCc-chhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHH
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIATAN--TNMF-TYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAAR  150 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~-~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~  150 (480)
                      .|+++..+++.++.+...+.....+  .+.. .|..++.......++++++++++|.+++++++|+|||+|+..++.++.
T Consensus         2 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~   81 (382)
T 4eb5_A            2 AYFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYA   81 (382)
T ss_dssp             CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHH
T ss_pred             eeeccCCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHH
Confidence            3778777777777666444333322  1111 133344556778889999999999987789999999999999999887


Q ss_pred             HhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEe
Q psy12303        151 HKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNC  230 (480)
Q Consensus       151 ~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~  230 (480)
                      ...    ..      ||+ .|+++..+|+++..++..+...+.+++.+|+++++.+|+++|+++++++      +++|++
T Consensus        82 ~~~----~~------~gd-~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~~~v~~  144 (382)
T 4eb5_A           82 MRN----AR------KGK-HILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDD------TILVSV  144 (382)
T ss_dssp             HHH----GG------GCC-EEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCTT------EEEEEC
T ss_pred             hhc----cC------CCC-EEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcCC------CeEEEE
Confidence            210    00      445 7889999999998888764221128899999888999999999998754      899999


Q ss_pred             ccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCch
Q psy12303        231 TSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDG  310 (480)
Q Consensus       231 ~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~  310 (480)
                      ++++|++|.+.|+++|.++|++||++ |+|++|+.+..+.+....       ++|+++.|+||+++ |.|+|++++++..
T Consensus       145 ~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~-------~~di~~~s~sK~~g-~~g~G~~~~~~~~  215 (382)
T 4eb5_A          145 QHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKI-------GADMLTISSNDIYG-PKGVGALWIRKEA  215 (382)
T ss_dssp             CSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHH-------TCSEEEEETGGGTC-CSSCEEEEEETTC
T ss_pred             eccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccCcccc-------CCCEEEeehHHhcC-CCceEEEEEcccc
Confidence            99999999999999999999999999 999999965443322122       57999999999854 6789999987652


Q ss_pred             hhHhhhcCCcccccccccccCcccCCCCccccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCe
Q psy12303        311 LLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKF  389 (480)
Q Consensus       311 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~  389 (480)
                      .+       ..++......  .....+      +.. ....++..++..+ .++++++.++..++++++.+.|++ +|++
T Consensus       216 ~l-------~~~~~~~~~~--~~~~~~------~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~~~~  278 (382)
T 4eb5_A          216 KL-------QPVILGGGQE--NGLRSG------SENVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRIIDNVLK-IEES  278 (382)
T ss_dssp             CC-------CCSSCSSCTG--GGTSCS------CCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTT-STTE
T ss_pred             cc-------CceecCCCcc--ccccCC------CccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhh-CCCe
Confidence            11       1111110000  000011      100 1122334444443 346888899999999999999999 8899


Q ss_pred             EEecCCc---eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeee--------------CC-----
Q psy12303        390 YLILEPE---MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPL--------------ND-----  447 (480)
Q Consensus       390 ~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~--------------~~-----  447 (480)
                      +++.++.   .+.++|.+.  ...              ..++.+.|.+.|+.+ .++..              .+     
T Consensus       279 ~~~~~~~~~~~~~~~~~~~--~~~--------------~~~~~~~l~~~gi~v-~~g~~~~~~~~~~~~~~~~~g~~~~~  341 (382)
T 4eb5_A          279 YLNGHPEKRLPNNVNVRFS--YIE--------------GESIVLSLDMAGIQA-STGSACSSKTLQPSHVLMACGLKHEE  341 (382)
T ss_dssp             EECSCSSSBCTTEEEEEET--TSC--------------HHHHHHHHHHHTCBC-BCCCGGGTSSCCCCHHHHHTTCCHHH
T ss_pred             EEeCCcccCCCCEEEEEeC--CcC--------------HHHHHHHHHHCCEEE-eccccccCCCCcccHHHHHcCCChhc
Confidence            9865431   345556442  111              234666777777543 22211              00     


Q ss_pred             cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        448 LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       448 ~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ..+++|++ ++..+|++|++++++.|++++++
T Consensus       342 ~~~~iRi~-~~~~~~~~~i~~~~~~l~~~~~~  372 (382)
T 4eb5_A          342 AHGTLLLT-LGRYNTDEDVDRLLEVLPGVIER  372 (382)
T ss_dssp             HTTEEEEE-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEE-CCCCCCHHHHHHHHHHHHHHHHH
Confidence            14699999 78888999999999999987653

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.98  E-value=4.6e-30  Score=253.67  Aligned_cols=353  Identities=13%  Similarity=0.050  Sum_probs=237.5

Q ss_pred             CCCCccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHH
Q psy12303         71 GHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAAR  150 (480)
Q Consensus        71 ~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~  150 (480)
                      .++.|+++...++.++.+. +.+...+..    + .++.......++++++++++|.++.++++|+|||+|+..++.++.
T Consensus         7 ~~~~yl~~~~~~~~~~~v~-~a~~~~~~~----~-~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~   80 (392)
T 2z9v_A            7 ADPVITLTAGPVNAYPEVL-RGLGRTVLY----D-YDPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLI   80 (392)
T ss_dssp             SCCSEECSSSCCCCCHHHH-HHTTSCCCC----T-TSHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHC
T ss_pred             CCcceeecCCCcCCCHHHH-HHHhccccc----c-ccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhc
Confidence            3557888776655566554 333333322    1 134445667788999999999987889999999999999998873


Q ss_pred             HhcCchhHhcCCCccCCceEEEecCCCchhHH--HHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEE
Q psy12303        151 HKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR--SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFV  228 (480)
Q Consensus       151 ~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~--~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v  228 (480)
                      .              ||+ .|+++..+|++..  ..+...|.   +++.+|+++++.+|+++|++++++.    .++++|
T Consensus        81 ~--------------~gd-~Vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l~~~l~~~----~~~~~v  138 (392)
T 2z9v_A           81 S--------------PDD-VVLNLASGVYGKGFGYWAKRYSP---HLLEIEVPYNEAIDPQAVADMLKAH----PEITVV  138 (392)
T ss_dssp             C--------------TTC-CEEEEESSHHHHHHHHHHHHHCS---CEEEEECCTTSCCCHHHHHHHHHHC----TTCCEE
T ss_pred             C--------------CCC-EEEEecCCcccHHHHHHHHHcCC---ceEEeeCCCCCCCCHHHHHHHHhcC----CCCcEE
Confidence            2              445 6888888888763  33455677   8899999888899999999999641    137899


Q ss_pred             EeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeC
Q psy12303        229 NCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQ  308 (480)
Q Consensus       229 ~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~  308 (480)
                      ++++++|++|.+.|+++|.++|++||+++|+|++|+.+....+....       ++|+++.|+||++++|.|+|++++++
T Consensus       139 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~-------~~d~~~~s~sK~~~~~~g~G~l~~~~  211 (392)
T 2z9v_A          139 SVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDC-------KADIYVTGPNKCLGAPPGLTMMGVSE  211 (392)
T ss_dssp             EEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGG-------TCSEEEECSSSTTCCCSCCEEEEECH
T ss_pred             EEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccc-------cceEEEecCcccccCCCceeEEEECH
Confidence            99999999999999999999999999999999999876554333222       68999999999999888899998764


Q ss_pred             chhhHhhhcCC--cc-cccccccccCcccCCCCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12303        309 DGLLISCNQMS--AE-YLFMQDKLYDVRYDTGDKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKS  384 (480)
Q Consensus       309 ~~~~~~~~~~~--~~-~l~~~~~~~~~~~~~~~~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~  384 (480)
                       +..+......  +. +......... .+.... ....+... ...++..+++.+...+++++.++..++++++.+.|++
T Consensus       212 -~~~~~l~~~~~g~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~  288 (392)
T 2z9v_A          212 -RAWAKMKANPLAPRASMLSIVDWEN-AWSRDK-PFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTA  288 (392)
T ss_dssp             -HHHHHHHTCTTSCCSSTTCSGGGTT-TTSTTS-CCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHhhhccCCCCceeccHHHHHh-hhcccC-CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence             4443332211  11 1111000000 000000 00011111 1223445555554455788899999999999999999


Q ss_pred             CCCCeEEecCC----ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeCCcccEEEEecccC
Q psy12303        385 MPDKFYLILEP----EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPLNDLPNFFRNIISSA  459 (480)
Q Consensus       385 ~~~g~~~~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~~~~~~~R~~~~~~  459 (480)
                       + |++++.++    ...++++.+ +....              ..++.+.|.++ |+.+........ .+++|+++..+
T Consensus       289 -~-g~~~~~~~~~~~~~~~~~~~~-~~~~~--------------~~~l~~~L~~~~gi~v~~g~~~~~-~~~lRi~~~~~  350 (392)
T 2z9v_A          289 -M-GLSVWAASDSIASPTTTAVRT-PDGVD--------------EKALRQAARARYGVVFSSGRGETL-GKLTRIGHMGP  350 (392)
T ss_dssp             -T-TCCBSSSSGGGBCTTEEEEEC-CTTCC--------------HHHHHHHHHHHHCEECEECCGGGT-TTEEEEECCGG
T ss_pred             -c-CCeeccCCccccCCceEEEEC-CCCCC--------------HHHHHHHHHhcCCEEEecCCCCCC-CCeEEEeCccc
Confidence             6 88876523    234455543 21111              23567778777 754433221122 57999993344


Q ss_pred             CCCHHHHHHHHHHHHHhhcc
Q psy12303        460 AVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       460 ~~t~~di~~~~~~l~~~~~~  479 (480)
                      .++++||++++++|++++++
T Consensus       351 ~~~~~~i~~~~~~l~~~~~~  370 (392)
T 2z9v_A          351 TAQPIYAIAALTALGGAMNA  370 (392)
T ss_dssp             GCSHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHH
Confidence            78999999999999988754

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.97  E-value=3.5e-30  Score=254.63  Aligned_cols=323  Identities=16%  Similarity=0.146  Sum_probs=220.0

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCC-CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH--H
Q psy12303        107 APVFILMETVVLEKMRQIIGWQGG-DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR--S  183 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~--~  183 (480)
                      .+.......++++++++++|.++. ++++|+|||+|+..++.++..              ||+ .|+++..+|++..  .
T Consensus        47 ~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~--------------~gd-~vl~~~~~~~~~~~~~  111 (393)
T 2huf_A           47 HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLE--------------DGD-VILIGHTGHWGDRSAD  111 (393)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCC--------------TTC-EEEEEESSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhC--------------CCC-EEEEECCCcchHHHHH
Confidence            344567778899999999999764 799999999999999988743              445 7888888888842  3


Q ss_pred             HHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccc
Q psy12303        184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       184 ~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                      .++..|.   +++.+|.++++.+|+++|++++++.     ++++|++++++|++|.+.|+++|.++|++||+++|+|+++
T Consensus       112 ~~~~~g~---~~~~v~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~  183 (393)
T 2huf_A          112 MATRYGA---DVRVVKSKVGQSLSLDEIRDALLIH-----KPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVA  183 (393)
T ss_dssp             HHHHTTC---EEEEEECCTTCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTT
T ss_pred             HHHHcCC---eeEEEeCCCCCCCCHHHHHHHHhcc-----CCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEccc
Confidence            4455676   7899999888899999999999872     1789999999999999999999999999999999999999


Q ss_pred             cccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcC---CcccccccccccCcccCC-CCc
Q psy12303        264 GGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQM---SAEYLFMQDKLYDVRYDT-GDK  339 (480)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~-~~~  339 (480)
                      +.+....+....       ++|+++.++||++++|.|+|+++++ ++........   ..+|........ ..+.. ...
T Consensus       184 ~~~~~~~~~~~~-------~~d~~~~s~sK~l~g~~G~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  254 (393)
T 2huf_A          184 SLGGAPMFMDRW-------EIDAMYTGSQKVLGAPPGITPVSFS-HRAVERYKRRNTKVKVYYWDMSLVG-DYWGCFGRP  254 (393)
T ss_dssp             TBTTBCCCTTTT-------TCSEEECCSSSTTCCCSSCEEEEEC-HHHHHHHHTCSSCCSCGGGCHHHHH-HHTTCSSSC
T ss_pred             ccCCCCcchhhc-------CccEEEECCCcccccCCCeEEEEEC-HHHHHHHhhcCCCCceEEEchHHHH-hhhcccccc
Confidence            876543332122       6899999999998888889998875 4454444322   123221100000 00000 000


Q ss_pred             ccc-CCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC--cee-EEEEEeecCccCCCch
Q psy12303        340 VIQ-CGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP--EMV-NVSFWYLPTRVRNMPH  414 (480)
Q Consensus       340 ~~~-~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~--~~~-~v~f~~~~~~~~~~~~  414 (480)
                      ... ++... ...++..+++.+...++++..++..++++++.+.|++ . |++++.++  ..+ .+++.+ +....    
T Consensus       255 ~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~-~~~~~----  327 (393)
T 2huf_A          255 RIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQD-A-GFELYADPKDRLSTVTTIKV-PQGVD----  327 (393)
T ss_dssp             CCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCGGGBCTTEEEEEC-CTTCC----
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCccccCCcEEEEEc-CCCCC----
Confidence            000 11111 2223333555544456788889999999999999999 6 88876433  223 444543 21111    


Q ss_pred             hhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        415 EKRLNILGEITPILKGRMMQA-GTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       415 ~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                                ..++.+.|.++ |+ .+.+.......+++|+++..+.++++++++++++|++++++
T Consensus       328 ----------~~~~~~~L~~~~gi-~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~  382 (393)
T 2huf_A          328 ----------WLKAAQYAMKTYLV-EISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAA  382 (393)
T ss_dssp             ----------HHHHHHHHHHHHCE-ECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHhCCE-EEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHH
Confidence                      23566777665 64 44332211115799999335567899999999999987653

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.97  E-value=2.6e-30  Score=254.74  Aligned_cols=350  Identities=13%  Similarity=0.105  Sum_probs=239.2

Q ss_pred             CCccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHHH
Q psy12303         73 PMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAARH  151 (480)
Q Consensus        73 p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~~  151 (480)
                      ..|+++...+..++.+. +.+.....   ..|  ++....+.+++++++++++|.+ +.++++|+|||+|+..++.++..
T Consensus        20 ~~~l~~~~~~~~~~~v~-~a~~~~~~---~~~--~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~   93 (386)
T 2dr1_A           20 KYKLFTAGPVACFPEVL-EIMKVQMF---SHR--SKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVS   93 (386)
T ss_dssp             CSEECCSSSCCCCHHHH-HHTTSCCC---CTT--SHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSC
T ss_pred             cceeecCCCcCCcHHHH-HHHhcccc---ccc--CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhc
Confidence            35777765555555444 33333222   123  3345778889999999999997 55699999999999999988743


Q ss_pred             hcCchhHhcCCCccCCceEEEecCCCchh--HHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEE
Q psy12303        152 KMFPTYKEKGLSAIKGQLVMFTSDQCHYS--VRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVN  229 (480)
Q Consensus       152 ~~~~~~~~~g~~~~~g~~~vl~~~~~h~s--~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~  229 (480)
                                    ||+ .|+++..+|++  +..++...|.   +++.+|.+.++.+|+++|++++++.    .++++|+
T Consensus        94 --------------~gd-~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l~~~l~~~----~~~~~v~  151 (386)
T 2dr1_A           94 --------------KGG-KVLVTIIGAFGKRYKEVVESNGR---KAVVLEYEPGKAVKPEDLDDALRKN----PDVEAVT  151 (386)
T ss_dssp             --------------TTC-EEEEEESSHHHHHHHHHHHHTTC---EEEEEECCTTCCCCHHHHHHHHHHC----TTCCEEE
T ss_pred             --------------CCC-eEEEEcCCchhHHHHHHHHHhCC---ceEEEecCCCCCCCHHHHHHHHhcC----CCCcEEE
Confidence                          445 78888889988  7888888887   8899999888899999999999642    2388999


Q ss_pred             eccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCc
Q psy12303        230 CTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQD  309 (480)
Q Consensus       230 ~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~  309 (480)
                      +++++|++|.+.|+++|.++|++||+++|+|++|+.+....+....       ++|+++.|+||++++|.|+|++++++ 
T Consensus       152 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~-------~~di~~~s~sK~~~~~~g~G~~~~~~-  223 (386)
T 2dr1_A          152 ITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKW-------GLDVVFSSSQKAFGVPPGLAIGAFSE-  223 (386)
T ss_dssp             EESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTT-------TCSEEEEETTSTTCCCSSCEEEEECH-
T ss_pred             EEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCcccccccc-------CCcEEEEeccccccCCCceEEEEECH-
Confidence            9999999999999999999999999999999999987654332222       68999999999999887899999864 


Q ss_pred             hhhHhhhcC-CcccccccccccCcccCCCCccccCCCC-CCchHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCC
Q psy12303        310 GLLISCNQM-SAEYLFMQDKLYDVRYDTGDKVIQCGRH-NDIFKLWLQWRAKGDE-GFEKQIDRLMELAEYMVKKIKSMP  386 (480)
Q Consensus       310 ~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~~l~~~g~~-~~~~~~~~~~~l~~~l~~~l~~~~  386 (480)
                      +........ ...+........ .... +......+.. ....++..+++.+... +++++.++..++++++.+.|++ .
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~  300 (386)
T 2dr1_A          224 RFLEIAEKMPERGWYFDIPLYV-KYLK-EKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVRE-I  300 (386)
T ss_dssp             HHHHHHTTCTTCCSTTCHHHHH-HHHH-HHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHhcCCCCceEEeHHHHH-Hhhc-cCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-c
Confidence            444333211 011110000000 0000 0000001111 1233444455554344 5788899999999999999999 6


Q ss_pred             CCeEEecCC---ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCH
Q psy12303        387 DKFYLILEP---EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTE  463 (480)
Q Consensus       387 ~g~~~~~~~---~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~  463 (480)
                       |++++.++   ....+++.+ +....              ..++.++|.++|+.+........ .+++|++ ++..+++
T Consensus       301 -g~~~~~~~~~~~~~~~~~~~-~~~~~--------------~~~~~~~l~~~gi~v~~~~~~~~-~~~iRi~-~~~~~~~  362 (386)
T 2dr1_A          301 -GLDILAEPGHESPTITAVLT-PPGIK--------------GDEVYEAMRKRGFELAKGYGSVK-EKTFRIG-HMGYMKF  362 (386)
T ss_dssp             -TCCBSSCTTCBCSSEEEEEC-CTTCC--------------HHHHHHHHHHTTEECEECCGGGT-TTEEEEE-CCSSCCH
T ss_pred             -CCeeCcCccccCCceEEEEc-CCCCC--------------HHHHHHHHHHCCeEEecCccccC-CCEEEEE-CCCCCCH
Confidence             88875432   234455543 21111              24577888888744333221112 4799999 7678899


Q ss_pred             HHHHHHHHHHHHhhcc
Q psy12303        464 GDIDFLLTEMDRLGHD  479 (480)
Q Consensus       464 ~di~~~~~~l~~~~~~  479 (480)
                      +|+++++++|++++++
T Consensus       363 ~~i~~~~~~l~~~~~~  378 (386)
T 2dr1_A          363 EDIQEMLDNLREVINE  378 (386)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999987653

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.97  E-value=9.6e-30  Score=254.02  Aligned_cols=343  Identities=16%  Similarity=0.177  Sum_probs=236.6

Q ss_pred             CCccccccCCCChHHhHHHHHHHHcC--cC---Cc--chhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHH
Q psy12303         73 PMFMNQLSCGLDVVSMAGEWLIATAN--TN---MF--TYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYA  145 (480)
Q Consensus        73 p~~~~~~~~~~~~~~~~~~~l~~~~~--~~---~~--~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~a  145 (480)
                      ..|+++..+++.++.+. +.+...+.  ..   ..  .+..+........++++++++++|.+++++++|+|||+|+..+
T Consensus        23 ~iyld~~~~~~~~~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a  101 (423)
T 3lvm_A           23 PIYLDYSATTPVDPRVA-EKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLA  101 (423)
T ss_dssp             SEECBTTTCCCCCHHHH-HHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHH
T ss_pred             CEeecCCCcCCCCHHHH-HHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHH
Confidence            35788776666666655 44443333  11   10  2223344566778899999999999877899999999999999


Q ss_pred             HHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHc---CCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCC
Q psy12303        146 FLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVC---GLGTDNCVEVPSDKRGRLIPSELERLVLERKAKG  222 (480)
Q Consensus       146 l~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~---g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~  222 (480)
                      +.++++...          .||+ .|+++..+|+++..++..+   |.   +++.+|.++++.+|+++|+++++++    
T Consensus       102 ~~~l~~~~~----------~~gd-~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l~~~i~~~----  163 (423)
T 3lvm_A          102 IKGAANFYQ----------KKGK-HIITSKTEHKAVLDTCRQLEREGF---EVTYLAPQRNGIIDLKELEAAMRDD----  163 (423)
T ss_dssp             HHHHHHHHT----------TTCC-EEEEETTSCHHHHHHHHHHHHTTC---EEEEECCCTTSCCCHHHHHHHCCTT----
T ss_pred             HHHHHHhhc----------cCCC-EEEECCccchHHHHHHHHHHHcCC---EEEEeccCCCCccCHHHHHHhcCCC----
Confidence            998875210          0345 8889999999998888665   66   8899999999999999999999765    


Q ss_pred             CccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccce
Q psy12303        223 DIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCS  302 (480)
Q Consensus       223 ~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g  302 (480)
                        +++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+....+....       ++|++++|+||+++ |.|+|
T Consensus       164 --~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~-------~~di~~~s~sK~~g-~~g~G  233 (423)
T 3lvm_A          164 --TILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQL-------KVDLMSFSGHKIYG-PKGIG  233 (423)
T ss_dssp             --EEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTS-------CCSEEEEESTTTTS-CSSCE
T ss_pred             --cEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhc-------CCCEEEechHHhcC-CCCeE
Confidence              899999999999999999999999999999999999999987664443333       68999999999655 67799


Q ss_pred             EEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q psy12303        303 TIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKK  381 (480)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~  381 (480)
                      +++++++.. ...    ..+.......  .....+      +.. ....++..++..+ .+.++++.++..++++++.+.
T Consensus       234 ~~~~~~~~~-~~~----~~~~~~~~~~--~~~~~~------~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~  299 (423)
T 3lvm_A          234 ALYVRRKPR-VRI----EAQMHGGGHE--RGMRSG------TLPVHQIVGMGEAYRIA-KEEMATEMERLRGLRNRLWNG  299 (423)
T ss_dssp             EEEECBTTB-CCC----CCSSCSSCTT--TTTCCS------CCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecccc-CCC----CccccCCccc--ccccCC------CCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            999875422 111    1111110000  000000      101 1222333444433 234788899999999999999


Q ss_pred             HhcCCCCeEEecCCc---eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeee-------------
Q psy12303        382 IKSMPDKFYLILEPE---MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPL-------------  445 (480)
Q Consensus       382 l~~~~~g~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~-------------  445 (480)
                      |++ +++++++.++.   .+.++|++.  .   .+           ..++.+.|.+   +.+..+..             
T Consensus       300 L~~-~~~~~~~~~~~~~~~~~~~~~~~--~---~~-----------~~~l~~~l~~---i~v~~g~~~~~~~~~~~~~~~  359 (423)
T 3lvm_A          300 IKD-IEEVYLNGDLEHGAPNILNVSFN--Y---VE-----------GESLIMALKD---LAVSSGSACTSASLEPSYVLR  359 (423)
T ss_dssp             HTT-STTEEEESCSTTBCTTEEEEEET--T---SC-----------HHHHHHHTTT---EECBCCCC-----CCCCHHHH
T ss_pred             Hhc-CCCEEEeCCccccCCCeEEEEeC--C---CC-----------HHHHHHHHhh---heeccCccccCCCccccHHHH
Confidence            999 88999876543   245666541  1   11           1234444444   33322110             


Q ss_pred             -CCc-----ccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        446 -NDL-----PNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       446 -~~~-----~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                       .+.     .+++|++ ++..+|++||+++++.|++++++
T Consensus       360 ~~g~~~~~~~~~iRi~-~~~~~t~e~i~~~~~~l~~~~~~  398 (423)
T 3lvm_A          360 ALGLNDELAHSSIRFS-LGRFTTEEEIDYTIELVRKSIGR  398 (423)
T ss_dssp             HHTCCHHHHHTEEEEE-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCccccCceEEEE-CCCCCCHHHHHHHHHHHHHHHHH
Confidence             000     3799999 77889999999999999987753

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.97  E-value=3e-30  Score=255.09  Aligned_cols=347  Identities=14%  Similarity=0.131  Sum_probs=237.3

Q ss_pred             CccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCC-CeEECCChhHHHHHHHHHHHHh
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGG-DSILAPGGSISNLYAFLAARHK  152 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~-~~~~t~ggt~a~~~al~~~~~~  152 (480)
                      .|+++......++.+. +.+......   .|  ++...++.+++++++++++|.+++ ++++|+|||+|+..++.++.. 
T Consensus        35 ~~l~~~~~~~~~~~v~-~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~-  107 (393)
T 1vjo_A           35 RLLLGPGPSNAHPSVL-QAMNVSPVG---HL--DPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVE-  107 (393)
T ss_dssp             CEECSSSCCCCCHHHH-HHHSSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC-
T ss_pred             ceeccCCCCCCCHHHH-HHHhccccc---cc--CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccC-
Confidence            3555554444555444 444333321   22  233567788899999999999876 799999999999999988843 


Q ss_pred             cCchhHhcCCCccCCceEEEecCCCchh--HHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEe
Q psy12303        153 MFPTYKEKGLSAIKGQLVMFTSDQCHYS--VRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNC  230 (480)
Q Consensus       153 ~~~~~~~~g~~~~~g~~~vl~~~~~h~s--~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~  230 (480)
                                   ||+ .|+++..+|++  +..+++..|.   +++.+|.++++.+|+++|++++++.     ++++|++
T Consensus       108 -------------~gd-~Vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l~~~l~~~-----~~~~v~~  165 (393)
T 1vjo_A          108 -------------PGD-VVLIGVAGYFGNRLVDMAGRYGA---DVRTISKPWGEVFSLEELRTALETH-----RPAILAL  165 (393)
T ss_dssp             -------------TTC-EEEEEESSHHHHHHHHHHHHTTC---EEEEEECCTTCCCCHHHHHHHHHHH-----CCSEEEE
T ss_pred             -------------CCC-EEEEEcCChhHHHHHHHHHHcCC---ceEEEecCCCCCCCHHHHHHHHhhC-----CceEEEE
Confidence                         445 78888889998  8888888888   8899999888899999999999873     1789999


Q ss_pred             ccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCch
Q psy12303        231 TSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDG  310 (480)
Q Consensus       231 ~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~  310 (480)
                      ++++|++|.+.|+++|.++|+++|+++|+|++|+.+..+.+....       ++|+++.|+||++++|.++|+++++++ 
T Consensus       166 ~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~-------~~di~~~s~sK~l~~~~~~G~l~~~~~-  237 (393)
T 1vjo_A          166 VHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAW-------GVDLAYSCSQKGLGCSPGASPFTMSSR-  237 (393)
T ss_dssp             ESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTT-------TCSEEECCSSSTTCSCSSCEEEEECHH-
T ss_pred             eccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCccccc-------CccEEEEcCcccccCCCceEEEEECHH-
Confidence            999999999999999999999999999999999965433322122       689999999999998888999998654 


Q ss_pred             hhHhhhcC---CcccccccccccCcccCCCCccccC-CCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12303        311 LLISCNQM---SAEYLFMQDKLYDVRYDTGDKVIQC-GRH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM  385 (480)
Q Consensus       311 ~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~-~r~-~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~  385 (480)
                      ........   ..++....... ......+  .... +.. ....++..+++.+..++++++.++..++++++.+.|++ 
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-  313 (393)
T 1vjo_A          238 AIEKLQRRRTKVANWYLDMNLL-GKYWGSE--RVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLED-  313 (393)
T ss_dssp             HHHHHHTCSSCCSCSTTCHHHH-HHHHSTT--CCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHhccCCCCCceecCcHhh-hhhhccC--CCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH-
Confidence            44333211   11121110000 0000000  0011 111 12334455555544456788899999999999999999 


Q ss_pred             CCCeEEecCCc---eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeCCcccEEEEecccCCC
Q psy12303        386 PDKFYLILEPE---MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPLNDLPNFFRNIISSAAV  461 (480)
Q Consensus       386 ~~g~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~~~~~~~R~~~~~~~~  461 (480)
                      . +++++.+..   ...+++.+ +....              ..++.+.|.++ |+.+........ .+++|+++..+.+
T Consensus       314 ~-g~~~~~~~~~~~~~~~~~~~-~~~~~--------------~~~~~~~l~~~~gi~v~~g~~~~~-~~~iRis~~~~~~  376 (393)
T 1vjo_A          314 I-GLSLHVEKEYRLPTLTTVCI-PDGVD--------------GKAVARRLLNEHNIEVGGGLGELA-GKVWRVGLMGFNS  376 (393)
T ss_dssp             T-TCCBSSCGGGBCSSEEEEEC-CTTCC--------------HHHHHHHHHHHHCEECEECCGGGT-TTEEEEECCGGGC
T ss_pred             c-CCcccCCccccCCcEEEEEc-CCCCC--------------HHHHHHHHHhhCCEEEecCccccC-CCEEEEeCCccCC
Confidence            6 888754322   13444443 21111              24567778777 754433222222 5799999545667


Q ss_pred             CHHHHHHHHHHHHHhhc
Q psy12303        462 TEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       462 t~~di~~~~~~l~~~~~  478 (480)
                      +++++++++++|+++++
T Consensus       377 ~~~~i~~~~~~l~~~l~  393 (393)
T 1vjo_A          377 RKESVDQLIPALEQVLR  393 (393)
T ss_dssp             SHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHhC
Confidence            88899999999998753

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.97  E-value=1.5e-30  Score=256.22  Aligned_cols=320  Identities=15%  Similarity=0.120  Sum_probs=224.4

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCC--CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchh--HH
Q psy12303        107 APVFILMETVVLEKMRQIIGWQG--GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS--VR  182 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~--~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s--~~  182 (480)
                      ++....+..++++++++++|+++  +++++|+|||+|+. ++.++..              ||+ .|+++...|++  +.
T Consensus        30 ~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~--------------~gd-~vi~~~~~~~~~~~~   93 (384)
T 3zrp_A           30 SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLK--------------PND-KILVVSNGVFGDRWE   93 (384)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCC--------------TTC-EEEEECSSHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcC--------------CCC-EEEEecCCcchHHHH
Confidence            44456788889999999999987  78999999999999 8765532              446 77777788866  44


Q ss_pred             HHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecc
Q psy12303        183 SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAA  262 (480)
Q Consensus       183 ~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a  262 (480)
                      ..+...|.   +++.+|.+.++.+|+++|++++++.     ++++|++++++|++|.+.|+++|.++|++||+++|+|++
T Consensus        94 ~~~~~~g~---~~~~v~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a  165 (384)
T 3zrp_A           94 QIFKRYPV---NVKVLRPSPGDYVKPGEVEEEVRKS-----EYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGV  165 (384)
T ss_dssp             HHHTTSSC---EEEEECCSTTCCCCHHHHHHHHHHS-----CEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECT
T ss_pred             HHHHHcCC---cEEEecCCCCCCCCHHHHHHHHHhC-----CCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECc
Confidence            55566676   8899999989999999999999872     189999999999999999999999999999999999999


Q ss_pred             ccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhh-hcC-Cccccccccccc--CcccCCCC
Q psy12303        263 WGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISC-NQM-SAEYLFMQDKLY--DVRYDTGD  338 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~-~~~-~~~~l~~~~~~~--~~~~~~~~  338 (480)
                      |+.+....+....       ++|++++++||++++|.|+|+++++++ .+... ... ...+........  ...++.+.
T Consensus       166 ~~~~~~~~~~~~~-------~~d~~~~s~~K~~~~~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (384)
T 3zrp_A          166 SSVGAEEVKAEEW-------NVDVYLTASQKALGSAAGLGLLLLSPK-ALSILDSQNSIAGYYLDLRNWLPVMRGAEEGK  237 (384)
T ss_dssp             TTTTTSCCCTTTT-------TCSEEEEETTSTTCCCSSEEEEEECHH-HHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTC
T ss_pred             ccccCcccccccc-------CCCEEEecCcccccCCCceEEEEECHH-HHHHhcCCCCCCcccccHHHHHHHHHhhcccC
Confidence            9987665444333       689999999999988889999987654 43333 111 111111000000  00000000


Q ss_pred             ccccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC----ceeEEEEEeecCccCCCc
Q psy12303        339 KVIQCGRH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP----EMVNVSFWYLPTRVRNMP  413 (480)
Q Consensus       339 ~~~~~~r~-~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~----~~~~v~f~~~~~~~~~~~  413 (480)
                      ....++.. ....++..++..+...+++++.++..++++++.+.|++ . +++++.++    ....++|.+. . ..   
T Consensus       238 ~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~-~-~~---  310 (384)
T 3zrp_A          238 AAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEA-L-GLEIVARRPESYSNTVTGVILK-V-AD---  310 (384)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSCSSGGGBCSSEEEEECS-S-SC---
T ss_pred             CCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-C-CCeEccCcccccCccEEEEECC-C-CC---
Confidence            00000111 12334445666555666889999999999999999999 6 88876543    2334445432 1 11   


Q ss_pred             hhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        414 HEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       414 ~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                                 ..++.+.|.++|+.+. ++.... .+++|++ ++..+|++||++++++|++++++
T Consensus       311 -----------~~~~~~~l~~~gi~v~-~g~~~~-~~~iRi~-~~~~~~~e~i~~~~~~l~~~l~~  362 (384)
T 3zrp_A          311 -----------PQKVLAGTVNEGVEFA-PGVHPA-FKYFRIG-HMGWVTPNDAIIAISVIERTLRK  362 (384)
T ss_dssp             -----------HHHHHHHHHTTTCCCE-ECCCTT-CCEEEEE-CCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHCCEEEe-cCCCCC-cCEEEEe-ccccCCHHHHHHHHHHHHHHHHH
Confidence                       2467788888885443 322112 2789999 67779999999999999987753

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.97  E-value=1e-29  Score=253.45  Aligned_cols=357  Identities=15%  Similarity=0.084  Sum_probs=236.4

Q ss_pred             CccccccCCCChHHhHHHHHHHHcCc---CCc--chhcChhhHHHHHHHHHHHHHHhCC-CCCCeEECCChhHHHHHHHH
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIATANT---NMF--TYEIAPVFILMETVVLEKMRQIIGW-QGGDSILAPGGSISNLYAFL  147 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~--~~~~~~~~~~~e~~~~~~la~~~g~-~~~~~~~t~ggt~a~~~al~  147 (480)
                      .|+++...++.++.+. +.+...+..   +..  .+..++.......++++++++++|. ++.++++|+|||+|+..++.
T Consensus        30 i~l~~~~~~~~~~~v~-~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~  108 (420)
T 1t3i_A           30 VYLDNAATSQKPRAVL-EKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAY  108 (420)
T ss_dssp             EECBTTTCCCCCHHHH-HHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHH
T ss_pred             EEecCCccCCCCHHHH-HHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHH
Confidence            4666654455555555 334333221   111  1111222245556788999999999 66789999999999999998


Q ss_pred             HHHHhcCchhHhcCCCccCCceEEEecCCCchh----HHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCC
Q psy12303        148 AARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS----VRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGD  223 (480)
Q Consensus       148 ~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s----~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~  223 (480)
                      +++....          .||+ .|+++..+|++    +...+...|.   +++.+|.++++.+|+++|+++++++     
T Consensus       109 ~~~~~~~----------~~gd-~Vl~~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l~~~l~~~-----  169 (420)
T 1t3i_A          109 SWGMNNL----------KAGD-EIITTVMEHHSNLVPWQMVAAKTGA---VLKFVQLDEQESFDLEHFKTLLSEK-----  169 (420)
T ss_dssp             HTHHHHC----------CTTC-EEEEETTCCGGGTHHHHHHHHHHCC---EEEEECBCTTSSBCHHHHHHHCCTT-----
T ss_pred             Hhhhccc----------CCCC-EEEECcchhHHHHHHHHHHHHhcCc---EEEEeccCCCCCcCHHHHHHhhCCC-----
Confidence            8842100          1445 78888889988    5667777887   7889999888899999999999754     


Q ss_pred             ccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceE
Q psy12303        224 IPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCST  303 (480)
Q Consensus       224 ~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~  303 (480)
                       +++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+....+....       ++|+++.|+||.+ +|.|+|+
T Consensus       170 -~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~-------~~di~~~s~sK~~-~~~g~G~  240 (420)
T 1t3i_A          170 -TKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLI-------DCDWLVASGHKMC-APTGIGF  240 (420)
T ss_dssp             -EEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH-------TCSEEEEEGGGTT-SCTTCEE
T ss_pred             -ceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhc-------CCCEEEEehhhhc-CCCceEE
Confidence             899999999999999999999999999999999999999987654332223       5899999999965 4677888


Q ss_pred             EEEeCchhhHhhhcCCccccccccc-ccCcccCCCCccccCCC-CC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q psy12303        304 IHFKQDGLLISCNQMSAEYLFMQDK-LYDVRYDTGDKVIQCGR-HN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVK  380 (480)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~r-~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~  380 (480)
                      ++++ ++...........+...... .....+......+..+. .. ..+++..+++.+...+++++.++..++++++.+
T Consensus       241 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~  319 (420)
T 1t3i_A          241 LYGK-EEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQ  319 (420)
T ss_dssp             EEEC-HHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             EEEc-hHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            8875 44444432221111000000 00000000011111111 11 122233345555445678888999999999999


Q ss_pred             HHhcCCCCeEEecCC-----ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeee--------eCC
Q psy12303        381 KIKSMPDKFYLILEP-----EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQP--------LND  447 (480)
Q Consensus       381 ~l~~~~~g~~~~~~~-----~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~--------~~~  447 (480)
                      .|++ .++++++.++     ..+.++|.+ +. ..              ..++.+.|.+.|+. +.+..        ..+
T Consensus       320 ~L~~-~~g~~~~~~~~~~~~~~~~~~~~~-~~-~~--------------~~~~~~~l~~~gi~-v~~~~~~~~~~~~~~g  381 (420)
T 1t3i_A          320 GLGQ-IPQLRLYGPNPKHGDRAALASFNV-AG-LH--------------ASDVATMVDQDGIA-IRSGHHCTQPLHRLFD  381 (420)
T ss_dssp             HHHT-CTTEEEESCCGGGSCBCSEEEEEE-TT-BC--------------HHHHHHHHHTTTEE-CBCSCTTCHHHHHHTT
T ss_pred             HHHh-CCCeEEeCCCccccccCCEEEEEE-CC-CC--------------HHHHHHHHHHCCeE-EeeccccchHHHHhcC
Confidence            9999 8899987654     256666653 21 11              23566777788744 33321        112


Q ss_pred             cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        448 LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       448 ~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ..+++|++ ++..++++|++++++.|++++++
T Consensus       382 ~~~~iRis-~~~~~~~~~i~~~~~~l~~~~~~  412 (420)
T 1t3i_A          382 ASGSARAS-LYFYNTKEEIDLFLQSLQATIRF  412 (420)
T ss_dssp             CCCCEEEE-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEe-cCCCCCHHHHHHHHHHHHHHHHH
Confidence            14689999 77888999999999999988754

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.97  E-value=8e-30  Score=252.98  Aligned_cols=357  Identities=14%  Similarity=0.099  Sum_probs=236.6

Q ss_pred             CccccccCCCChHHhHHHHHHHHcCc-----CCcchhcChhhHHHHHHHHHHHHHHhCC-CCCCeEECCChhHHHHHHHH
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIATANT-----NMFTYEIAPVFILMETVVLEKMRQIIGW-QGGDSILAPGGSISNLYAFL  147 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~e~~~~~~la~~~g~-~~~~~~~t~ggt~a~~~al~  147 (480)
                      .|+++...++.++.+.. .+...+..     +...+..+........++++++++++|. ++.++++|+|+|+|+..++.
T Consensus        25 i~l~~~~~~~~~~~v~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~  103 (406)
T 1kmj_A           25 AYLDSAASAQKPSQVID-AEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVAN  103 (406)
T ss_dssp             EECCTTTCCCCCHHHHH-HHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHH
T ss_pred             EEecCCccCCCCHHHHH-HHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHH
Confidence            57777655555555553 33333221     1111111122345566789999999999 56789999999999999998


Q ss_pred             HHHHhcCchhHhcCCCccCCceEEEecCCCchhHH----HHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCC
Q psy12303        148 AARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR----SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGD  223 (480)
Q Consensus       148 ~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~----~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~  223 (480)
                      +++....          .||+ .|+++..+|++..    ..+...|.   +++.+|.++++.+|+++|+++++++     
T Consensus       104 ~~~~~~~----------~~gd-~vl~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~d~~~l~~~l~~~-----  164 (406)
T 1kmj_A          104 SWGNSNV----------RAGD-NIIISQMEHHANIVPWQMLCARVGA---ELRVIPLNPDGTLQLETLPTLFDEK-----  164 (406)
T ss_dssp             HTHHHHC----------CTTC-EEEEETTCCGGGTHHHHHHHHHHTC---EEEEECBCTTSCBCGGGHHHHCCTT-----
T ss_pred             HhhhhcC----------CCCC-EEEEecccchHHHHHHHHHHHhCCC---EEEEEecCCCCCcCHHHHHHHhccC-----
Confidence            8852100          1445 7888888887653    34566777   7889999888899999999998754     


Q ss_pred             ccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceE
Q psy12303        224 IPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCST  303 (480)
Q Consensus       224 ~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~  303 (480)
                       +++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+....+....       ++|+++.|+||+++ |.|+|+
T Consensus       165 -~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~-------~~d~~~~s~~K~~g-~~G~G~  235 (406)
T 1kmj_A          165 -TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQAL-------DCDFYVFSGHKLYG-PTGIGI  235 (406)
T ss_dssp             -EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH-------TCSEEEEEGGGTTS-CTTCEE
T ss_pred             -CeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCccccc-------CCCEEEEEchhccC-CCCcEE
Confidence             899999999999999999999999999999999999999987654332222       68999999999884 677899


Q ss_pred             EEEeCchhhHhhhcCCccccccccc-cc-CcccCCCCccccCCC-CC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q psy12303        304 IHFKQDGLLISCNQMSAEYLFMQDK-LY-DVRYDTGDKVIQCGR-HN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMV  379 (480)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~~~~~~~~~~~~r-~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~  379 (480)
                      ++++ ++..........++...... .. ...+......+..+. .. ..+++..+++.+...++++..++..++++++.
T Consensus       236 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~  314 (406)
T 1kmj_A          236 LYVK-EALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYAL  314 (406)
T ss_dssp             EEEC-HHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             EEEe-HHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            9875 44444332211111000000 00 000000001111111 11 11222244555444567788899999999999


Q ss_pred             HHHhcCCCCeEEecCC-ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeee--------CCccc
Q psy12303        380 KKIKSMPDKFYLILEP-EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPL--------NDLPN  450 (480)
Q Consensus       380 ~~l~~~~~g~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~--------~~~~~  450 (480)
                      +.|++ +++++++.++ ..+.++|.+ + ...              ..++.+.|.+.|+.+ .++..        .+..+
T Consensus       315 ~~L~~-~~~~~~~~~~~~~~~~~~~~-~-~~~--------------~~~~~~~l~~~gi~v-~~g~~~~~~~~~~~g~~~  376 (406)
T 1kmj_A          315 SQLES-VPDLTLYGPQNRLGVIAFNL-G-KHH--------------AYDVGSFLDNYGIAV-RTGHHCAMPLMAYYNVPA  376 (406)
T ss_dssp             HHHTT-STTEEEESCTTCCSEEEEEE-T-TCC--------------HHHHHHHHHHTTEEC-EEECTTCHHHHHHTTCSC
T ss_pred             HHHhc-CCCeEEecCCCcCCEEEEEE-C-CCC--------------HHHHHHHHhhCCcEE-EeccccchHHHHhcCCCC
Confidence            99999 8899987542 566777653 2 111              234667777888544 33221        12247


Q ss_pred             EEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        451 FFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       451 ~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ++|++ ++..+|++|++++++.|+++++.
T Consensus       377 ~iRis-~~~~~t~~~i~~~~~~l~~~~~~  404 (406)
T 1kmj_A          377 MCRAS-LAMYNTHEEVDRLVTGLQRIHRL  404 (406)
T ss_dssp             EEEEE-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEE-eecCCCHHHHHHHHHHHHHHHHh
Confidence            99999 77888999999999999988754

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.97  E-value=3.3e-30  Score=250.70  Aligned_cols=317  Identities=14%  Similarity=0.098  Sum_probs=219.9

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCC--CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhH--H
Q psy12303        107 APVFILMETVVLEKMRQIIGWQ--GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV--R  182 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~--~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~--~  182 (480)
                      ++.......++++++++++|.+  +.++++|+|||+|+..++.+++.                + .|+++...|++.  .
T Consensus        28 ~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~----------------d-~vl~~~~~~~~~~~~   90 (353)
T 2yrr_A           28 DPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR----------------G-PVLVLVNGAFSQRVA   90 (353)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC----------------C-CEEEEECSHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC----------------C-cEEEEcCCCchHHHH
Confidence            4555677888999999999996  56799999999999988866521                2 567777788874  4


Q ss_pred             HHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecc
Q psy12303        183 SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAA  262 (480)
Q Consensus       183 ~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a  262 (480)
                      ..+...|.   +++.+|.++++.+|+++|++++++.     ++++|++++++|++|.+.|+++|.++|++||+++|+|++
T Consensus        91 ~~~~~~g~---~~~~v~~~~~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a  162 (353)
T 2yrr_A           91 EMAALHGL---DPEVLDFPPGEPVDPEAVARALKRR-----RYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAV  162 (353)
T ss_dssp             HHHHHTTC---CEEEEECCTTSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECT
T ss_pred             HHHHHcCC---ceEEEeCCCCCCCCHHHHHHHHHhC-----CCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcC
Confidence            55677787   8899999888899999999999862     278999999999999999999999999999999999999


Q ss_pred             ccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcccc
Q psy12303        263 WGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQ  342 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  342 (480)
                      |+.+..+.+....       ++|++++++||++++|.|+|+++++++ .+..... .+.+....... ......  ....
T Consensus       163 ~~~~~~~~~~~~~-------~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~~~l~~-~~~~~~~~~~~-~~~~~~--~~~~  230 (353)
T 2yrr_A          163 TTLGMLPFSMRAM-------GVDYAFTGSQKCLSAPPGLAPIAASLE-ARKAFTG-KRGWYLDLARV-AEHWER--GGYH  230 (353)
T ss_dssp             TTTTTSCCCHHHH-------TCSEEECCTTSTTCCCSSCEEEEECHH-HHHHCCC-CSCSTTCHHHH-HHHHTT--CCCS
T ss_pred             ccccccccccccc-------CceEEEecCcccccCCCceEEEEECHH-HHHHhcc-CCCccccHHHH-hhhhhc--CCCC
Confidence            9866543332222       579999999999988888999987654 3333221 11111000000 000000  0000


Q ss_pred             CCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC--ceeEEEEEeecCccCCCchhhHHH
Q psy12303        343 CGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP--EMVNVSFWYLPTRVRNMPHEKRLN  419 (480)
Q Consensus       343 ~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~--~~~~v~f~~~~~~~~~~~~~~~~~  419 (480)
                      .+... ...++..++..+...+++++.++..++++++.+.|++ . |++++.++  ...+++|.+ +....         
T Consensus       231 ~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~-~~~~~---------  298 (353)
T 2yrr_A          231 HTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKA-R-GFRPYPKASPLPTVLVVRP-PEGVD---------  298 (353)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCEESCSSSBCTTEEEEEC-CTTCC---------
T ss_pred             CCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-C-CCccccCccCCCeEEEEEC-CCCCC---------
Confidence            11111 2233445565555556888899999999999999999 6 99986543  233344543 21111         


Q ss_pred             HhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHH-HHHHHHHHhhcc
Q psy12303        420 ILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDID-FLLTEMDRLGHD  479 (480)
Q Consensus       420 ~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~-~~~~~l~~~~~~  479 (480)
                           ..++.+.|.++|+.+........ .+++|++ .+..++++|++ +++++|++++++
T Consensus       299 -----~~~~~~~l~~~gi~v~~g~~~~~-~~~iRi~-~~~~~~~~~~~~~~~~~l~~~l~~  352 (353)
T 2yrr_A          299 -----ADRLVRALYAEGVAVAGGIGPTR-GQVLRLG-LMGEGARREAYQAFLKALDRALAL  352 (353)
T ss_dssp             -----HHHHHHHHHHTTEECEECCGGGT-TTCEEEE-CSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred             -----HHHHHHHHHHCCEEEeCCccccC-CCeEEEe-cCccCCHHHHHHHHHHHHHHHHhh
Confidence                 24567788888754433221222 5789999 66677889998 999999988764

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.97  E-value=5.8e-30  Score=252.88  Aligned_cols=353  Identities=10%  Similarity=0.095  Sum_probs=236.3

Q ss_pred             CCCccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCC-CeEECCChhHHHHHHHHHHH
Q psy12303         72 HPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGG-DSILAPGGSISNLYAFLAAR  150 (480)
Q Consensus        72 ~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~-~~~~t~ggt~a~~~al~~~~  150 (480)
                      .|.++.+.+++..++..+.+.+..   .....  ..+.......++++++++++|.+.. ++++|+|||+|+..++.++.
T Consensus        21 ~~~~~~~~p~p~~~~~~v~~a~~~---~~~~~--~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~   95 (393)
T 3kgw_A           21 VPTRLLLGPGPSNLAPRVLAAGSL---RMIGH--MQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL   95 (393)
T ss_dssp             CCCCEECSSSCCCCCHHHHHHTTC---CCCCT--TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC
T ss_pred             CccceeccCCCCCCCHHHHHHhcc---cccCc--ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC
Confidence            456677766665554333333322   11111  2344567778899999999999754 48999999999999998874


Q ss_pred             HhcCchhHhcCCCccCCceEEEecCCCchh--HHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEE
Q psy12303        151 HKMFPTYKEKGLSAIKGQLVMFTSDQCHYS--VRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFV  228 (480)
Q Consensus       151 ~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s--~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v  228 (480)
                      .              ||+ .|+++...|++  +...+...|.   +++.+|.+.++.+|+++|++++++.     ++++|
T Consensus        96 ~--------------~gd-~vl~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v  152 (393)
T 3kgw_A           96 E--------------PGD-SFLTGTNGIWGMRAAEIADRIGA---RVHQMIKKPGEHYTLQEVEEGLAQH-----KPVLL  152 (393)
T ss_dssp             C--------------TTC-EEEEEESSHHHHHHHHHHHHTTC---EEEEEECCTTCCCCHHHHHHHHHHH-----CCSEE
T ss_pred             C--------------CCC-EEEEEeCCchhHHHHHHHHHcCC---ceEEEeCCCCCCCCHHHHHHHHhhC-----CCcEE
Confidence            3              556 67777677763  3677777787   8899999888899999999999873     18899


Q ss_pred             EeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeC
Q psy12303        229 NCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQ  308 (480)
Q Consensus       229 ~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~  308 (480)
                      ++++++|++|.+.|+++|.++|++||+++|+|++|+.+....+....       ++|++++++||++++|.|+|++++++
T Consensus       153 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~-------~~d~~~~s~sK~~~~~~g~g~~~~~~  225 (393)
T 3kgw_A          153 FLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQ-------GIDIMYSSSQKVLNAPPGISLISFND  225 (393)
T ss_dssp             EEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTT-------TCCEEEEESSSTTCCCSSCEEEEECH
T ss_pred             EEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhc-------CCCEEEecCcccccCCCceeEEEECH
Confidence            99999999999999999999999999999999999866554433333       68999999999998888999998754


Q ss_pred             chhhHhhhcCCcc---cccccccccCcccCCCC--ccccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q psy12303        309 DGLLISCNQMSAE---YLFMQDKLYDVRYDTGD--KVIQCGRH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKI  382 (480)
Q Consensus       309 ~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~--~~~~~~r~-~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l  382 (480)
                      + ...........   +...... ....+....  .....+.. ....++..++..+..++++++.++..++++++.+.|
T Consensus       226 ~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L  303 (393)
T 3kgw_A          226 K-AKYKVYSRKTKPVSFYTDITY-LAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHL  303 (393)
T ss_dssp             H-HHHHHHTCSSCCSCSTTCHHH-HHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHhccCCCCCceeecHHH-HHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            4 44433221111   1000000 000000000  00001111 122344455555556668899999999999999999


Q ss_pred             hcCCCCeEEecCCc---eeEE-EEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeCCcccEEEEecc
Q psy12303        383 KSMPDKFYLILEPE---MVNV-SFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPLNDLPNFFRNIIS  457 (480)
Q Consensus       383 ~~~~~g~~~~~~~~---~~~v-~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~~~~~~~R~~~~  457 (480)
                      ++ . +++++.++.   ...+ +|.+ +....              ..++.+.|.++ |+ .+.++......+++|+++.
T Consensus       304 ~~-~-g~~~~~~~~~~~~~~~~~~~~-~~~~~--------------~~~~~~~l~~~~gi-~v~~g~~~~~~~~iRi~~~  365 (393)
T 3kgw_A          304 QE-M-GLKFFVKDPEIRLPTITTVTV-PAGYN--------------WRDIVSYVLDHFSI-EISGGLGPTEERVLRIGLL  365 (393)
T ss_dssp             HH-T-TCCBSSSSGGGBCSSEEEEEC-CTTBC--------------HHHHHHHHHHHHCE-ECBCCCGGGTTTEEEEECC
T ss_pred             HH-c-CCeeccCChhhcCCeEEEEeC-CCCCC--------------HHHHHHHHHHhCCE-EEeCCcccCCCCEEEEEec
Confidence            99 6 888753221   2233 3432 22211              24567788777 74 4443222222579999943


Q ss_pred             cCCCCHHHHHHHHHHHHHhhcc
Q psy12303        458 SAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       458 ~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +..+|++|+++++++|++++++
T Consensus       366 ~~~~~~~~i~~~~~~l~~~l~~  387 (393)
T 3kgw_A          366 GYNATTENVDRVAEALREALQH  387 (393)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHh
Confidence            6667999999999999998764

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.97  E-value=5.1e-29  Score=245.31  Aligned_cols=343  Identities=16%  Similarity=0.170  Sum_probs=231.7

Q ss_pred             CccccccCCCChHHhHHHHHHHHcCc--CCc-chhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHH
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIATANT--NMF-TYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAAR  150 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~-~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~  150 (480)
                      .|+++...++.++.+...+.....+.  +.. .+..+........++++++++++|.+++++++|+|||+|+..++.+++
T Consensus         3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~   82 (384)
T 1eg5_A            3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVA   82 (384)
T ss_dssp             EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHH
T ss_pred             EEEecCccCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhh
Confidence            47777666666666664433333221  111 112223345667788999999999987789999999999999999887


Q ss_pred             HhcCchhHhcCCCccCCceEEEecCCCchhHHHHH---HHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEE
Q psy12303        151 HKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA---AVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFF  227 (480)
Q Consensus       151 ~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~---~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~  227 (480)
                      ....          .||+ .|+++..+|+++...+   ...|.   +++.+|.++++.+|+++|+++++++      +++
T Consensus        83 ~~~~----------~~gd-~vl~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l~~~i~~~------~~~  142 (384)
T 1eg5_A           83 ETFE----------KRKR-TIITTPIEHKAVLETMKYLSMKGF---KVKYVPVDSRGVVKLEELEKLVDED------TFL  142 (384)
T ss_dssp             HHTT----------TTCC-EEEECTTSCHHHHHHHHHHHHTTC---EEEECCBCTTSCBCHHHHHHHCCTT------EEE
T ss_pred             hhcc----------CCCC-EEEECCCCchHHHHHHHHHHhcCC---EEEEEccCCCCccCHHHHHHHhCCC------CeE
Confidence            3100          0445 7889999999987776   55666   8889999888999999999998754      899


Q ss_pred             EEeccCCCccccccChHHHHHHHHHcC--cEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEE
Q psy12303        228 VNCTSGTTVLGAFDPIEEIADICQKYN--MWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIH  305 (480)
Q Consensus       228 v~~~~~~~~~G~~~~l~~I~~i~~~~~--~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~  305 (480)
                      |++++++|++|.+.|+++|.++|++||  +++|+|++|+.+....+.      ... ++|++++|+||+++ |.|+|+++
T Consensus       143 v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~------~~~-~~di~~~s~sK~~g-~~G~G~~~  214 (384)
T 1eg5_A          143 VSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSL------EKL-EVDYASFSAHKFHG-PKGVGITY  214 (384)
T ss_dssp             EEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCC------TTT-CCSEEEEEGGGGTS-CTTCEEEE
T ss_pred             EEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCc------hhc-CCCEEEecHHHhcC-CCceEEEE
Confidence            999999999999999999999999999  999999999855432221      122 68999999999865 56689998


Q ss_pred             EeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12303        306 FKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKS  384 (480)
Q Consensus       306 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~  384 (480)
                      +++..   .   .. ..+......  ...      ...+.. ....+++.+++.+ .+++++..++..++++++.+.|++
T Consensus       215 ~~~~~---~---~~-~~~~~~~~~--~~~------~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~  278 (384)
T 1eg5_A          215 IRKGV---P---IR-PLIHGGGQE--RGL------RSGTQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSKLVSGLMN  278 (384)
T ss_dssp             ECTTS---C---CC-CSBCSSCTT--TTT------BCSCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EcCCC---c---cc-cccccCccc--ccc------cCCCCChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHhCC
Confidence            86542   0   01 111110000  000      000100 1222333444432 356788899999999999999998


Q ss_pred             CCCCeEEecCCc---eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC-------------C-
Q psy12303        385 MPDKFYLILEPE---MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN-------------D-  447 (480)
Q Consensus       385 ~~~g~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~-------------~-  447 (480)
                        ++++++.++.   ...+.|.+.  ...              ..++.+.|.+.|+.+.......             + 
T Consensus       279 --~g~~~~~~~~~~~~~~~~~~~~--~~~--------------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~  340 (384)
T 1eg5_A          279 --LGAHIITPLEISLPNTLSVSFP--NIR--------------GSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGV  340 (384)
T ss_dssp             --TTCEECSCTTSBCTTEEEEECT--TCC--------------HHHHHHHHHHTTEECBC------------CHHHHTTC
T ss_pred             --CCeEEeCCcccCCCCEEEEEeC--CCC--------------HHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCC
Confidence              7998865432   234555432  111              2356677777774433211110             1 


Q ss_pred             ----cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        448 ----LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       448 ----~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                          ..+++|++ ++..+|++|+++++++|++++++
T Consensus       341 ~~~~~~~~iRi~-~~~~~~~~~i~~~~~~l~~~~~~  375 (384)
T 1eg5_A          341 DRRIAQGAIRIS-LCKYNTEEEVDYFLKKIEEILSF  375 (384)
T ss_dssp             CHHHHHHEEEEE-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ChhhcCCeEEEE-CCCCCCHHHHHHHHHHHHHHHHH
Confidence                13799999 77788999999999999988764

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.97  E-value=2.1e-29  Score=248.57  Aligned_cols=315  Identities=14%  Similarity=0.146  Sum_probs=220.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH----HH
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC----AA  186 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~----~~  186 (480)
                      .....++++.+++++|.+++++++|+|||+|+..++.+++-.             ||+ .|+++..+|+++..+    ++
T Consensus        58 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~-------------~gd-~vl~~~~~~~~~~~~~~~~~~  123 (390)
T 1elu_A           58 QQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWH-------------QGD-EILLTDCEHPGIIAIVQAIAA  123 (390)
T ss_dssp             HHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCC-------------TTC-EEEEETTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCC-------------CCC-EEEEecCcccHHHHHHHHHHH
Confidence            355667889999999998778999999999999998877311             445 788888999987654    46


Q ss_pred             HcCCCCCCeEEeeCC--CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHH----HcCcEEEee
Q psy12303        187 VCGLGTDNCVEVPSD--KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQ----KYNMWLHVD  260 (480)
Q Consensus       187 ~~g~~~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~----~~~~~l~vD  260 (480)
                      ..|.   +++.+|.+  +++.+|+++|+++++++      +++|++++++|++|.+.|+++|.++|+    +||+++|+|
T Consensus       124 ~~g~---~~~~v~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~D  194 (390)
T 1elu_A          124 RFGI---TYRFFPVAATLNQGDAAAVLANHLGPK------TRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVD  194 (390)
T ss_dssp             HHCC---EEEEECCGGGSSSSCHHHHHHTTCCTT------EEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEE
T ss_pred             HhCc---EEEEEcCCCCCCccchHHHHHHhcCCC------ceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEE
Confidence            6677   78889987  57889999999988754      899999999999999999999999999    999999999


Q ss_pred             ccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCC--
Q psy12303        261 AAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGD--  338 (480)
Q Consensus       261 ~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--  338 (480)
                      ++|+.+....+....       ++|+++.|+|||+++|.++|++++++. ...........+...........+++..  
T Consensus       195 ea~~~g~~~~~~~~~-------~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  266 (390)
T 1elu_A          195 GAQSAGSLPLDFSRL-------EVDYYAFTGHKWFAGPAGVGGLYIHGD-CLGEINPTYVGWRSITYGAKGEPTGWAEGG  266 (390)
T ss_dssp             CTTTBTTBCCCTTTS-------CCSEEEEESSSTTCCCTTCEEEEECTT-TGGGCCCCSCCTTTEEECTTSCEEEECSGG
T ss_pred             cccccCCcCCChhhc-------CCCEEEccccccccCCCceEEEEECHH-hHhhcCCccccCCcccccccCcccccccch
Confidence            999976543332222       689999999998888899999998753 3333221111110000000000000000  


Q ss_pred             ccccCCC-C-CCchHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHhcCCCCeEEecC--CceeEEEEEeecCccCCCc
Q psy12303        339 KVIQCGR-H-NDIFKLWLQWRAKGDEG-FEKQIDRLMELAEYMVKKIKSMPDKFYLILE--PEMVNVSFWYLPTRVRNMP  413 (480)
Q Consensus       339 ~~~~~~r-~-~~~l~~~~~l~~~g~~~-~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~--~~~~~v~f~~~~~~~~~~~  413 (480)
                      ..+..+. . ....++..++..+...+ ++++.++..++++++.+.|++ ++|++++.+  +..+.++|.+ +....   
T Consensus       267 ~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~-~~~~~---  341 (390)
T 1elu_A          267 KRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ-LPHVHCLATSAPQAGLVSFTV-DSPLG---  341 (390)
T ss_dssp             GGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-STTEEESCSSCCSSSEEEEEE-CSSSC---
T ss_pred             HhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEecCccccccEEEEEc-CCCCC---
Confidence            0011111 1 12233445555554444 788899999999999999999 889998753  3566666644 22111   


Q ss_pred             hhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        414 HEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       414 ~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                                 ..++.+.|.+.|+.+ .+..  + .+++|++ ++..++++|+++++++|+++.
T Consensus       342 -----------~~~~~~~l~~~gi~v-~~~~--~-~~~iRis-~~~~~~~~~i~~~~~~l~~~~  389 (390)
T 1elu_A          342 -----------HRAIVQKLEEQRIYL-RTIA--D-PDCIRAC-CHYITDEEEINHLLARLADFG  389 (390)
T ss_dssp             -----------HHHHHHHHHHTTEEC-EEET--T-TTEEEEE-CCTTCCHHHHHHHHHHHTTCC
T ss_pred             -----------HHHHHHHHHHCCEEE-EecC--C-CCeEEEe-cccCCCHHHHHHHHHHHHhhC
Confidence                       235677787887443 3322  2 4799999 778899999999999998753

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.97  E-value=5.2e-30  Score=249.40  Aligned_cols=313  Identities=11%  Similarity=-0.021  Sum_probs=216.9

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH--HH
Q psy12303        107 APVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR--SC  184 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~--~~  184 (480)
                      ++.......++++++++++|.++.++++|+|||+|+..++.++..              ||+ .|+++..+|++..  ..
T Consensus        29 ~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~--------------~gd-~vl~~~~~~~~~~~~~~   93 (352)
T 1iug_A           29 TEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFA--------------PGE-RVLVPVYGKFSERFYEI   93 (352)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCC--------------TTC-EEEEEECSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccC--------------CCC-eEEEEeCCchhHHHHHH
Confidence            344556677899999999999877899999999999999988743              445 7888888999965  34


Q ss_pred             HHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHc--CcEEEeecc
Q psy12303        185 AAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY--NMWLHVDAA  262 (480)
Q Consensus       185 ~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~--~~~l~vD~a  262 (480)
                      +...|.   +++.+|.++++.+|+++|++   +      ++++|++++++|++|.+.|+++|.++|++|  |+++|+|++
T Consensus        94 ~~~~g~---~~~~v~~~~~~~~d~~~l~~---~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a  161 (352)
T 1iug_A           94 ALEAGL---VVERLDYPYGDTPRPEDVAK---E------GYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMV  161 (352)
T ss_dssp             HHHTTC---EEEEEECCTTCCCCTTTSCC---S------SCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECT
T ss_pred             HHHcCC---ceEEEeCCCCCCCCHHHHhc---c------CCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECC
Confidence            455676   88999998888899998876   2      278999999999999999999999999999  999999999


Q ss_pred             ccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcccc
Q psy12303        263 WGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQ  342 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  342 (480)
                      |+.+....+....       ++|+++.++|||+++|.|+|+++++++ .+.....  ..+........ .....+  ...
T Consensus       162 ~~~~~~~~~~~~~-------~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~~~~~~--~~~~~~~~~~~-~~~~~~--~~~  228 (352)
T 1iug_A          162 TSLLVGEVALEAM-------GVDAAASGSQKGLMCPPGLGFVALSPR-ALERLKP--RGYYLDLAREL-KAQKEG--ESA  228 (352)
T ss_dssp             TTBTTBCCCSGGG-------TCSEEEEESSSTTCCCSCEEEEEECHH-HHHTCCC--CSSTTCHHHHH-HHHTTT--CCS
T ss_pred             ccccCcceecccc-------CeeEEEecCcccccCCCceeEEEECHH-HHHHhhC--CCceeeHHHHH-hhcccC--CCC
Confidence            9876544332222       689999999999998889999997654 3332211  11100000000 000000  000


Q ss_pred             CCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC-ceeEEEEEeecCccCCCchhhHHHH
Q psy12303        343 CGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP-EMVNVSFWYLPTRVRNMPHEKRLNI  420 (480)
Q Consensus       343 ~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~  420 (480)
                      .+... ...++..++..+... ++++.++..++++++.+.|++ . |++++.++ ....++|.+ +....          
T Consensus       229 ~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~-~~~~~----------  294 (352)
T 1iug_A          229 WTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEE-G-GLRPVPKRFSPAVAAFYL-PEGVP----------  294 (352)
T ss_dssp             SCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHH-T-TCEESCSSBCTTCEEEEC-CTTCC----------
T ss_pred             CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-C-CCcccccccCCeEEEEEc-CCCCC----------
Confidence            11111 122334445444333 778889999999999999999 6 99886443 344555543 21111          


Q ss_pred             hhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        421 LGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       421 l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                          ..++.++|.++|+.+ .+.......+++|++ ++..++++|+++++++|++++++
T Consensus       295 ----~~~~~~~l~~~gi~v-~~~~~~~~~~~iRi~-~~~~~~~~~i~~~~~~l~~~~~~  347 (352)
T 1iug_A          295 ----YARVKEAFAQRGAVI-AGGQGPLKGKVFRLS-LMGAYDRYEALGVAGMFREVLEE  347 (352)
T ss_dssp             ----HHHHHHHHHTTTEEC-EECCGGGTTTEEEEC-CCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHCCEEE-EeCCCccCCCEEEEE-ccccCCHHHHHHHHHHHHHHHHH
Confidence                245677888887443 332211115799999 77788999999999999988754

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.97  E-value=2.3e-29  Score=249.00  Aligned_cols=354  Identities=15%  Similarity=0.089  Sum_probs=234.0

Q ss_pred             CCCCccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCC-CeEECCChhHHHHHHHHHH
Q psy12303         71 GHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGG-DSILAPGGSISNLYAFLAA  149 (480)
Q Consensus        71 ~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~-~~~~t~ggt~a~~~al~~~  149 (480)
                      ..+.++++.+++..++..+.+.+.....   ..|  ++.......++++++++++|.+++ ++++|+|||+|+..++.++
T Consensus        15 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~---~~~--~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~   89 (396)
T 2ch1_A           15 IIPEKIMMGPGPSNCSKRVLTAMTNTVL---SNF--HAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL   89 (396)
T ss_dssp             CCCCCBCCSSSSCCCCHHHHHHTTSCCC---CTT--CHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH
T ss_pred             CCCcceeecCCCCCCCHHHHHHhccccc---cCC--ChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHh
Confidence            3445555555554443333344333222   123  344446667889999999999876 7999999999999999887


Q ss_pred             HHhcCchhHhcCCCccCCceEEEecCCCchhHH--HHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEE
Q psy12303        150 RHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR--SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFF  227 (480)
Q Consensus       150 ~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~--~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~  227 (480)
                      ..              ||+ .|+++..+|+++.  ..+...|.   +++.+|.++++.+|+++|++++++.     ++++
T Consensus        90 ~~--------------~gd-~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l~~~l~~~-----~~~~  146 (396)
T 2ch1_A           90 LE--------------EGD-RVLIAVNGIWAERAVEMSERYGA---DVRTIEGPPDRPFSLETLARAIELH-----QPKC  146 (396)
T ss_dssp             CC--------------TTC-EEEEEESSHHHHHHHHHHHHTTC---EEEEEECCTTSCCCHHHHHHHHHHH-----CCSE
T ss_pred             cC--------------CCC-eEEEEcCCcccHHHHHHHHHcCC---ceEEecCCCCCCCCHHHHHHHHHhC-----CCCE
Confidence            43              445 7888888999874  46777787   7899999888899999999999873     1789


Q ss_pred             EEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEe
Q psy12303        228 VNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFK  307 (480)
Q Consensus       228 v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~  307 (480)
                      |++++++|++|.+.|+++|.++|+++|+++|+|++|+.+..+.+....       ++|+++.|+||++++|.++|+++++
T Consensus       147 v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~-------~~d~~~~s~~K~~~~~~g~g~~~~~  219 (396)
T 2ch1_A          147 LFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKW-------EIDAVYTGAQKVLGAPPGITPISIS  219 (396)
T ss_dssp             EEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTT-------TCCEEECCCC-CCCCCSSCEEEEEC
T ss_pred             EEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhc-------CcCEEEEcCCccccCCCCeEEEEEC
Confidence            999999999999999999999999999999999999966543332222       6799999999999988899988876


Q ss_pred             CchhhHhhhcC---CcccccccccccCcccCC--CCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q psy12303        308 QDGLLISCNQM---SAEYLFMQDKLYDVRYDT--GDKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKK  381 (480)
Q Consensus       308 ~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~--~~~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~  381 (480)
                      + ..+......   ...+....... ...+..  .......+... ...++..++..+..++++++.++..++++++.+.
T Consensus       220 ~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~  297 (396)
T 2ch1_A          220 P-KALDVIRNRRTKSKVFYWDLLLL-GNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEG  297 (396)
T ss_dssp             H-HHHHHHHTCSSCCSCGGGCHHHH-HHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHhhhhccCcccceEechHHH-HHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            5 444433211   11111110000 000000  00000011111 2234444555544567888899999999999999


Q ss_pred             HhcCCCCeEEecCCc---e-eEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeCCcccEEEEec
Q psy12303        382 IKSMPDKFYLILEPE---M-VNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPLNDLPNFFRNII  456 (480)
Q Consensus       382 l~~~~~g~~~~~~~~---~-~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~~~~~~~R~~~  456 (480)
                      |++ . |++++.+..   . ..+++.+ +....              ..++.++|.++ |+.+........ .+++|+++
T Consensus       298 L~~-~-g~~~~~~~~~~~~~~~~~~~~-~~~~~--------------~~~~~~~L~~~~gi~v~~g~~~~~-~~~iRi~~  359 (396)
T 2ch1_A          298 LGK-M-GLDIFVKDPRHRLPTVTGIMI-PKGVD--------------WWKVSQYAMNNFSLEVQGGLGPTF-GKAWRVGI  359 (396)
T ss_dssp             HHH-H-TCCBSSCSGGGBCTTEEEEEC-CTTCC--------------HHHHHHHHHHHHCBCCBCCCGGGT-TTEEEEEC
T ss_pred             HHH-C-CCeeccCCccccCCceEEEEc-CCCCC--------------HHHHHHHHHHhCCEEEecCccccC-CCEEEEEC
Confidence            999 6 888764332   1 2444543 21111              23566777765 754322111112 57999994


Q ss_pred             ccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        457 SSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       457 ~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ..+.++++|+++++++|++++++
T Consensus       360 ~~~~~~~e~i~~~~~~l~~~l~~  382 (396)
T 2ch1_A          360 MGECSTVQKIQFYLYGFKESLKA  382 (396)
T ss_dssp             CGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHHHHH
Confidence            36678999999999999987653

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.97  E-value=3.3e-29  Score=246.11  Aligned_cols=316  Identities=14%  Similarity=0.084  Sum_probs=216.9

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCC-CeE-ECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH--
Q psy12303        107 APVFILMETVVLEKMRQIIGWQGG-DSI-LAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR--  182 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~~-~~~-~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~--  182 (480)
                      ++....+.+++++++++++|++.. +++ +|+|||+|+..++.++..              ||+ .|+++...+++..  
T Consensus        47 ~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~--------------~gd-~vi~~~~~~~~~~~~  111 (376)
T 3f0h_A           47 TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFT--------------KKD-KVLVIDGGSFGHRFV  111 (376)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCC--------------TTC-CEEEEESSHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccC--------------CCC-eEEEEeCChhhHHHH
Confidence            455567778899999999999752 445 489999999999987753              456 5555555454433  


Q ss_pred             HHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecc
Q psy12303        183 SCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAA  262 (480)
Q Consensus       183 ~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a  262 (480)
                      ..+...|.   +++.++.+.++.+|+++|+++++++      +++|++++++|++|.+.|+++|.++|++||+++|+|++
T Consensus       112 ~~~~~~g~---~~~~v~~~~~~~~d~~~l~~~~~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~  182 (376)
T 3f0h_A          112 QLCEIHEI---PYVALKLEHGKKLTKEKLYEYDNQN------FTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCV  182 (376)
T ss_dssp             HHHHHTTC---CEEEEECCTTCCCCHHHHHTTTTSC------CCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECT
T ss_pred             HHHHHcCC---ceEEEeCCCCCCCCHHHHHHhhccC------ceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcC
Confidence            34555666   8899999888999999999876543      88999999999999999999999999999999999999


Q ss_pred             ccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcC-CcccccccccccCcccCCCCccc
Q psy12303        263 WGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQM-SAEYLFMQDKLYDVRYDTGDKVI  341 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~  341 (480)
                      |+.+....+....       ++|++++++||++++|.|+|++++++ +........ ...+......... ....+  ..
T Consensus       183 ~~~~~~~~~~~~~-------~~d~~~~s~~K~l~~~~G~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~  251 (376)
T 3f0h_A          183 SAFLADPFNMNEC-------GADVMITGSQKVLACPPGISVIVLAP-RGVERVEKSKVRTMYFDLKDALK-NQERG--QT  251 (376)
T ss_dssp             TTTTTSCCCHHHH-------TCSEEEEETTTTTCCCSSCEEEEECH-HHHHHHHTCCCCCSTTCHHHHHH-HHTTT--CC
T ss_pred             ccccCcccccccc-------CccEEEecCcccccCCCceEEEEECH-HHHHHhhcCCCCceeecHHHHHh-hcccC--CC
Confidence            9988765444333       68999999999999888899987654 444433321 1121111000000 00000  00


Q ss_pred             cCCCCCCc---hHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhH
Q psy12303        342 QCGRHNDI---FKLWLQWRAKGDE-GFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKR  417 (480)
Q Consensus       342 ~~~r~~~~---l~~~~~l~~~g~~-~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~  417 (480)
                      ..+  ...   .++..++..+... +++++.++..++++++.+.|++ . ++++..++....++. +.+....       
T Consensus       252 ~~~--~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~~~~~~~-~~~~~~~-------  319 (376)
T 3f0h_A          252 PFT--PAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKD-L-PFELVSESPANGVTS-VHPTTAN-------  319 (376)
T ss_dssp             SSC--CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT-S-SEEECCSSBBTTEEE-EEESSSC-------
T ss_pred             CCC--CcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-c-CCccCccccCceEEE-EeCCCCC-------
Confidence            011  122   3445555555455 6888999999999999999998 4 788764433332222 2222211       


Q ss_pred             HHHhhhhhHHHHHHHHhc-ccEEEeeee-eCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        418 LNILGEITPILKGRMMQA-GTMMVGYQP-LNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       418 ~~~l~~~~~~i~~~l~~~-g~~~~~~~~-~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                             ..++.+.|.++ |+. +.++. ..+ .+++|++ ++..+|++|+++++++|++++++
T Consensus       320 -------~~~l~~~l~~~~gi~-v~~g~~~~~-~~~lRis-~~~~~t~e~i~~~~~~l~~~l~~  373 (376)
T 3f0h_A          320 -------AYDIFLKLKDEYGIW-ICPNGGEMK-DTIFRVG-HIGALTHEDNTTLVNAFKDLQKR  373 (376)
T ss_dssp             -------HHHHHHHHHHHSSEE-CEECCGGGT-TTCEEEE-CCSSCCHHHHHHHHHHHHHHHHT
T ss_pred             -------HHHHHHHHHHhCCEE-EecCccccC-CCEEEEe-cCCCCCHHHHHHHHHHHHHHHHh
Confidence                   24577888888 644 43321 122 5799999 77789999999999999998753

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.97  E-value=4.8e-29  Score=243.77  Aligned_cols=320  Identities=13%  Similarity=0.131  Sum_probs=218.2

Q ss_pred             HHHHHHHHHHHHHhCCCC--CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchh-HHHHHHHc
Q psy12303        112 LMETVVLEKMRQIIGWQG--GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS-VRSCAAVC  188 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~--~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s-~~~~~~~~  188 (480)
                      ....++++++++++|.+.  .++++|+|||+|+..++.+++.              ||+.+++.+..+|++ +..++...
T Consensus        37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~--------------~gd~vi~~~~~~~~~~~~~~~~~~  102 (366)
T 1m32_A           37 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALG--------------PQDKVLIVSNGAYGARMVEMAGLM  102 (366)
T ss_dssp             TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCC--------------TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhcC--------------CCCeEEEEeCCCccHHHHHHHHHh
Confidence            445667888999999432  3699999999999999988743              445466676678876 56677778


Q ss_pred             CCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccc
Q psy12303        189 GLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLL  268 (480)
Q Consensus       189 g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~  268 (480)
                      |.   +++.+|.+.++.+|+++|++++++.    .++++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+..
T Consensus       103 g~---~~~~v~~~~~~~~d~~~l~~~l~~~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~  175 (366)
T 1m32_A          103 GI---AHHAYDCGEVARPDVQAIDAILNAD----PTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGI  175 (366)
T ss_dssp             TC---CEEEEECCTTSCCCHHHHHHHHHHC----TTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTS
T ss_pred             CC---ceEEEeCCCCCCCCHHHHHHHHhcC----CCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCc
Confidence            88   7899999888899999999999863    1277899999999999999999999999999999999999987655


Q ss_pred             ccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcc-cCCCCccccCCCC-
Q psy12303        269 LSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVR-YDTGDKVIQCGRH-  346 (480)
Q Consensus       269 ~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~r~-  346 (480)
                      ..+....       ++|+++.|+||++++|.|+|++++++. ..........++.......+... ...+..  ..+.. 
T Consensus       176 ~~~~~~~-------~~di~~~s~~K~~~~~~g~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  245 (366)
T 1m32_A          176 PMDIAAL-------HIDYLISSANKCIQGVPGFAFVIAREQ-KLAACKGHSRSLSLDLYAQWRCMEDNHGKW--RFTSPT  245 (366)
T ss_dssp             CCCTTTT-------TCSEEEEESSSTTCCCSSEEEEEEEHH-HHTTCTTCCSCSTTCHHHHHHHHHHTTTCC--SSCCCH
T ss_pred             Ccccccc-------CccEEEecCcccccCCCceEEEEECHH-HHHhhcCCCCCccccHHHHHhhhcccCCCC--CCCCCH
Confidence            4332222       589999999999988888999998753 33322211111111000000000 000000  00111 


Q ss_pred             CCchHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC--cee-EEEEEeecCccCCCchhhHHHHhh
Q psy12303        347 NDIFKLWLQWRAKGDEG-FEKQIDRLMELAEYMVKKIKSMPDKFYLILEP--EMV-NVSFWYLPTRVRNMPHEKRLNILG  422 (480)
Q Consensus       347 ~~~l~~~~~l~~~g~~~-~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~--~~~-~v~f~~~~~~~~~~~~~~~~~~l~  422 (480)
                      ....++..+++.+...+ ++++.++..++++++.+.|++ . +++++.++  ..+ .+++.+ +.. .+.+         
T Consensus       246 ~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~~~~~~~~~~~~-~~~-~~~~---------  312 (366)
T 1m32_A          246 HTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRA-L-GFNTLLDDELHSPIITAFYS-PED-PQYR---------  312 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCGGGBCSSEEEEEC-CCC-TTCC---------
T ss_pred             HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHH-C-CCeeccCchhcCceEEEEEc-Ccc-CCCC---------
Confidence            11223444555544444 788899999999999999999 6 88775442  344 444543 210 0100         


Q ss_pred             hhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        423 EITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       423 ~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                        ..++.+.|.++|+. +.++...+ .+++|++ ++..++++||++++++|+++++++
T Consensus       313 --~~~~~~~l~~~gi~-v~~~~~~~-~~~iRi~-~~~~~~~~~i~~~~~~l~~~~~~~  365 (366)
T 1m32_A          313 --FSEFYRRLKEQGFV-IYPGKVSQ-SDCFRIG-NIGEVYAADITALLTAIRTAMYWT  365 (366)
T ss_dssp             --HHHHHHHHHHTTEE-CEECCCSS-SCEEEEE-CCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred             --HHHHHHHHHHCCEE-EECCcCCC-CCEEEEe-cCCCCCHHHHHHHHHHHHHHHHhc
Confidence              24567788888744 44332223 5799999 777889999999999999987653

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.97  E-value=4.7e-29  Score=247.63  Aligned_cols=343  Identities=15%  Similarity=0.075  Sum_probs=229.0

Q ss_pred             CCccccccCCCChHHhHHHHHHHHcCc---CC-cchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHH
Q psy12303         73 PMFMNQLSCGLDVVSMAGEWLIATANT---NM-FTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLA  148 (480)
Q Consensus        73 p~~~~~~~~~~~~~~~~~~~l~~~~~~---~~-~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~  148 (480)
                      ..|+++...++.++.+.. .+...+..   +. ..|..++.......++++++++++|.++.++++|+|+|+++..++.+
T Consensus        27 ~~~ld~~~~~~~~~~v~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~  105 (406)
T 3cai_A           27 WVHFDAPAGMLIPDSVAT-TVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEA  105 (406)
T ss_dssp             CEECBGGGCCCCCHHHHH-HHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHH
T ss_pred             eEEEeCCCcCCCCHHHHH-HHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHH
Confidence            357777666656665553 33332221   11 12322333456677889999999999877899999999999888776


Q ss_pred             HHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH----cCCCCCCeEEeeCC-CCCCCCHHHHHHHHHHHHHCCC
Q psy12303        149 ARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV----CGLGTDNCVEVPSD-KRGRLIPSELERLVLERKAKGD  223 (480)
Q Consensus       149 ~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~----~g~~~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~~~  223 (480)
                      .....           .||+ .|+++..+|+++..++..    .|.   +++.+|++ +++.+|+++|+++++++     
T Consensus       106 l~~~~-----------~~gd-~vi~~~~~~~~~~~~~~~~~~~~g~---~v~~v~~~~~~~~~d~~~l~~~l~~~-----  165 (406)
T 3cai_A          106 SSSRA-----------GLGY-EVIVSRLDDEANIAPWLRAAHRYGA---KVKWAEVDIETGELPTWQWESLISKS-----  165 (406)
T ss_dssp             TGGGG-----------BTTC-EEEEETTSCGGGTHHHHHHHHHHBC---EEEEECCCTTTCCCCGGGHHHHCCTT-----
T ss_pred             Hhhcc-----------CCCC-EEEEcCCccHHHHHHHHHHHHhcCC---eEEEEecCcccCCcCHHHHHHHhCCC-----
Confidence            52110           1445 788889999987666554    576   88999998 67899999999998754     


Q ss_pred             ccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccce-
Q psy12303        224 IPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCS-  302 (480)
Q Consensus       224 ~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g-  302 (480)
                       +++|++++++|++|.+.|+++|.++|+++|+++|+|++|+.+..+.+....       ++|+++.|+||+++ |. +| 
T Consensus       166 -~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~-------~~d~~~~s~~K~~g-~~-~G~  235 (406)
T 3cai_A          166 -TRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRET-------DADVVTVNAHAWGG-PP-IGA  235 (406)
T ss_dssp             -EEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHH-------CCSEEEEEGGGGTS-CS-CEE
T ss_pred             -ceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhc-------CCCEEEeehhhhcC-CC-cCe
Confidence             899999999999999999999999999999999999999976554433223       68999999999876 55 77 


Q ss_pred             EEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC-CchHHHHHHHHhcH--------------HHHHHH
Q psy12303        303 TIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN-DIFKLWLQWRAKGD--------------EGFEKQ  367 (480)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~-~~l~~~~~l~~~g~--------------~~~~~~  367 (480)
                      +++++ ++.......... +. +..  ....+..+      +... ...++..++..+..              ++++++
T Consensus       236 ~~~~~-~~~~~~l~~~~~-~~-~~~--~~~~~~~~------t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~  304 (406)
T 3cai_A          236 MVFRD-PSVMNSFGSVST-NP-YAT--GPARLEIG------VHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSA  304 (406)
T ss_dssp             EEESC-HHHHHTSCCCCS-CT-TCC--GGGGGCCS------CCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHH
T ss_pred             EEEEe-hHHHhhcCCccc-CC-CCC--ccccccCC------CccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHH
Confidence            77764 444433221110 10 000  00001111      1111 11122333433211              147788


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCeEEecCC--ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeee-
Q psy12303        368 IDRLMELAEYMVKKIKSMPDKFYLILEP--EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQP-  444 (480)
Q Consensus       368 ~~~~~~l~~~l~~~l~~~~~g~~~~~~~--~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~-  444 (480)
                      .++..++++++.+.|++ +++++++.+.  ..+.++|.+.  ...              ..++.+.|.+.|+.+ .... 
T Consensus       305 ~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~--~~~--------------~~~~~~~L~~~gi~v-~~g~~  366 (406)
T 3cai_A          305 DAYLNRVFDYLMVSLRS-LPLVMLIGRPEAQIPVVSFAVH--KVP--------------ADRVVQRLADNGILA-IANTG  366 (406)
T ss_dssp             HHHHHHHHHHHHHHHHT-CTTEEECCCCSSBCSEEEEEET--TBC--------------HHHHHHHHHHTTEEC-EECCS
T ss_pred             HHHHHHHHHHHHHHHhc-CCCeEEcCCccccCCEEEEEEC--CcC--------------HHHHHHHHHHCCcEE-ecCCh
Confidence            89999999999999999 8899886542  3455555432  111              235667777777443 3321 


Q ss_pred             -----eCC---cccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        445 -----LND---LPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       445 -----~~~---~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                           ..+   ..+++|++ ++..+|++||++++++|+++
T Consensus       367 ~~~~~~~g~~~~~~~iRis-~~~~~t~e~i~~~~~~l~~~  405 (406)
T 3cai_A          367 SRVLDVLGVNDVGGAVTVG-LAHYSTMAEVDQLVRALASL  405 (406)
T ss_dssp             CHHHHHHTTTTTTCCEEEE-CCTTCCHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCCCCCCeEEEE-eecCCCHHHHHHHHHHHHHh
Confidence                 001   13789999 77888999999999999875

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.97  E-value=2.3e-29  Score=247.86  Aligned_cols=355  Identities=12%  Similarity=0.046  Sum_probs=225.2

Q ss_pred             CCccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCC----CCCeEECCChhHHHHHHHHH
Q psy12303         73 PMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQ----GGDSILAPGGSISNLYAFLA  148 (480)
Q Consensus        73 p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~----~~~~~~t~ggt~a~~~al~~  148 (480)
                      +..+.+.+++..+...+.+.+.....   ..+  +|.......+++++++++++..    +.++++|+|||+|+..++.+
T Consensus         4 ~~~~~~~p~p~~~~~~v~~a~~~~~~---~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~   78 (385)
T 2bkw_A            4 SVDTLLIPGPIILSGAVQKALDVPSL---GHT--SPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASN   78 (385)
T ss_dssp             CCCEECSSSSCCCCHHHHHTTSCCCC---CTT--SHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHH
T ss_pred             ccceeecCCCcCchHHHHHHHhcccc---ccC--CHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHH
Confidence            34456666655544333333333222   112  4444445566778888888763    46799999999999999988


Q ss_pred             HHHhcCchhHhcCCCccCCceEEEecC-CCchhHHHHHHHcCCCCCCeEEeeC-CCCCCCCHHHHHHHHHHHHHCCCccE
Q psy12303        149 ARHKMFPTYKEKGLSAIKGQLVMFTSD-QCHYSVRSCAAVCGLGTDNCVEVPS-DKRGRLIPSELERLVLERKAKGDIPF  226 (480)
Q Consensus       149 ~~~~~~~~~~~~g~~~~~g~~~vl~~~-~~h~s~~~~~~~~g~~~~~v~~v~~-~~~~~~d~~~L~~~i~~~~~~~~~~~  226 (480)
                      +...           ..||+.+++... ..|.++...+...|.   +++.+|+ +.++.+|+++|++++++.     +++
T Consensus        79 ~~~~-----------~~~gd~vlv~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~d~~~l~~~l~~~-----~~~  139 (385)
T 2bkw_A           79 FILS-----------KAPNKNVLVVSTGTFSDRFADCLRSYGA---QVDVVRPLKIGESVPLELITEKLSQN-----SYG  139 (385)
T ss_dssp             HSCT-----------TCSCCEEEEECSSHHHHHHHHHHHHTTC---EEEEECCSSTTSCCCHHHHHHHHHHS-----CCS
T ss_pred             Hhcc-----------CCCCCeEEEEcCCcchHHHHHHHHHcCC---ceEEEecCCCCCCCCHHHHHHHHhcC-----CCC
Confidence            7410           015563444423 334444567777787   8899999 888899999999999861     278


Q ss_pred             EEEeccCCCccccccChHHHHHHHHHc--CcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEE
Q psy12303        227 FVNCTSGTTVLGAFDPIEEIADICQKY--NMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTI  304 (480)
Q Consensus       227 ~v~~~~~~~~~G~~~~l~~I~~i~~~~--~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~  304 (480)
                      +|++++++|++|.+.|+++|.++|++|  |+++|+|++|+.+..+.+....       ++|++++|+||++++|.|+|++
T Consensus       140 ~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~-------~~d~~~~s~~K~~~~~~G~G~~  212 (385)
T 2bkw_A          140 AVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEW-------GVDFALTASQKAIGAPAGLSIS  212 (385)
T ss_dssp             EEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTT-------TCSEEEEESSSTTCCCSCEEEE
T ss_pred             EEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCcccccccc-------CceEEEecCccccccCCcceEE
Confidence            999999999999999999999999999  9999999999876554332222       6899999999999988889999


Q ss_pred             EEeCchhhH-hhh----cCCcccccccccccC--cccCCCCccccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHH
Q psy12303        305 HFKQDGLLI-SCN----QMSAEYLFMQDKLYD--VRYDTGDKVIQCGRH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAE  376 (480)
Q Consensus       305 ~~~~~~~~~-~~~----~~~~~~l~~~~~~~~--~~~~~~~~~~~~~r~-~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~  376 (480)
                      +++++ .+. ...    .....|.........  ..+..+......+.. ....++..+++.+...+++++.++..++++
T Consensus       213 ~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~  291 (385)
T 2bkw_A          213 LCSSR-FMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSD  291 (385)
T ss_dssp             EECHH-HHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             EEcHH-HHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence            87654 333 221    001111100000000  000000000000111 122334445555444457888899999999


Q ss_pred             HHHHHH-hcCCCCeEEecC-C----ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC-Ccc
Q psy12303        377 YMVKKI-KSMPDKFYLILE-P----EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN-DLP  449 (480)
Q Consensus       377 ~l~~~l-~~~~~g~~~~~~-~----~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~-~~~  449 (480)
                      ++.+.| ++ + +++++.+ +    ....+++.+ +.                 ..++.+.|.+.|+ .+.+.... ...
T Consensus       292 ~l~~~L~~~-~-g~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~l~~~gi-~v~~g~~~~~~~  350 (385)
T 2bkw_A          292 WFKDSLVNG-L-QLTSVSRYPSNMSAHGLTAVYV-AD-----------------PPDVIAFLKSHGV-VIAGGIHKDIGP  350 (385)
T ss_dssp             HHHHHHHTT-T-CCEESSCSSSTTBCSSCEEEEC-SC-----------------HHHHHHHHHHTTE-ECBCCCCTTTGG
T ss_pred             HHHHHHHHh-c-CceecccCcccccCCceEEEec-CC-----------------HHHHHHHHHHCCe-EEeCCCCcccCC
Confidence            999999 88 6 8888642 1    234455543 11                 1356677777774 34332211 125


Q ss_pred             cEEEEe-ccc--CCCCHHHHHHHHHHHHHhhccC
Q psy12303        450 NFFRNI-ISS--AAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       450 ~~~R~~-~~~--~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      +++|++ +..  +.+|++|++++++.|+++++++
T Consensus       351 ~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~~  384 (385)
T 2bkw_A          351 KYIRIGHMGVTACNKNLPYMKNCFDLIKLALQRK  384 (385)
T ss_dssp             GEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC-
T ss_pred             CEEEEEccccccccCCHHHHHHHHHHHHHHHHhc
Confidence            799999 532  2579999999999999987753

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.97  E-value=4.7e-29  Score=243.51  Aligned_cols=342  Identities=11%  Similarity=0.008  Sum_probs=228.0

Q ss_pred             ccccccCCCCh-HHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHHHh
Q psy12303         75 FMNQLSCGLDV-VSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAARHK  152 (480)
Q Consensus        75 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~~~  152 (480)
                      ++++.+++..+ +.++..+.....+.....+..++...++.+++++++++++|.+ +.++++|+|||+|+..++.++.. 
T Consensus         5 ~~~~~p~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~-   83 (362)
T 3ffr_A            5 KIYFTPGPSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVE-   83 (362)
T ss_dssp             CEEECSSSCCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCS-
T ss_pred             ceeccCCCcCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccC-
Confidence            45555555443 4444333334333321122246667788889999999999985 46799999999999999987743 


Q ss_pred             cCchhHhcCCCccCCceEEEecCCCchh--HHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEe
Q psy12303        153 MFPTYKEKGLSAIKGQLVMFTSDQCHYS--VRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNC  230 (480)
Q Consensus       153 ~~~~~~~~g~~~~~g~~~vl~~~~~h~s--~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~  230 (480)
                                   | + ++++. ..|++  +...+...|.   +++.++.+.++.+|+++|+  +++      +|++|++
T Consensus        84 -------------~-~-~i~~~-~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l~--~~~------~~~~v~~  136 (362)
T 3ffr_A           84 -------------K-K-SFHCV-NGSFSKRFYEFAGELGR---EAYKEEAAFGKGFYPADIT--VPA------DAEIICL  136 (362)
T ss_dssp             -------------S-E-EEEEE-CSHHHHHHHHHHHHTTC---EEEEEECCTTCCCCGGGCC--CCT------TCCEEEE
T ss_pred             -------------C-c-EEEEc-CcHHHHHHHHHHHHhCC---CeEEEecCCCCCCCHHHHh--ccC------CccEEEE
Confidence                         3 2 34444 45555  3345666677   8899999888999999998  333      3899999


Q ss_pred             ccCCCccccccChHHHHHHHHHc-CcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCc
Q psy12303        231 TSGTTVLGAFDPIEEIADICQKY-NMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQD  309 (480)
Q Consensus       231 ~~~~~~~G~~~~l~~I~~i~~~~-~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~  309 (480)
                      ++++|++|.+.|+++|.++|++| |+++|+|++|+.+....+.         ..+|+++.++||++++|.|+|++++++.
T Consensus       137 ~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~---------~~~d~~~~s~~K~~~~~~G~g~~~~~~~  207 (362)
T 3ffr_A          137 THNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDW---------TKIDSVFFSVQKCFGLPAGLGVWILNDR  207 (362)
T ss_dssp             ESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCT---------TSCSEEEEETTSTTCCCSCCEEEEEEHH
T ss_pred             EcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccCh---------hHCcEEEEecccccCCCCceEEEEECHH
Confidence            99999999999999999999999 9999999999876543321         1379999999999998889999887654


Q ss_pred             hhhHhhhcCC-----cccccccccccCcccCCCCccccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHh
Q psy12303        310 GLLISCNQMS-----AEYLFMQDKLYDVRYDTGDKVIQCGRH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIK  383 (480)
Q Consensus       310 ~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~  383 (480)
                       .+.......     ..+....... ......+  ....+.. ....++..+++.+..++++++.++..++++++.+.|+
T Consensus       208 -~~~~~~~~~~gg~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~  283 (362)
T 3ffr_A          208 -VIEKSKALLAKRKSIGTYHTIPSM-LEKARVN--QTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIE  283 (362)
T ss_dssp             -HHHHHHHHHHTTCCCCSTTSHHHH-HHHHTTT--CCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHhhhccccCCCCcccccHHHH-HHHhhcC--CCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence             333222111     1111000000 0000000  0001111 1233444555555555688999999999999999999


Q ss_pred             cCCCCeEEecCC----ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccC
Q psy12303        384 SMPDKFYLILEP----EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSA  459 (480)
Q Consensus       384 ~~~~g~~~~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~  459 (480)
                      + +||++++.++    ...+++|... .  .              ..++.+.|.++|+.+.......+ .+++|++ ++.
T Consensus       284 ~-~~g~~~~~~~~~~~~~~~~~~~~~-~--~--------------~~~~~~~l~~~gi~~~~g~~~~~-~~~iRis-~~~  343 (362)
T 3ffr_A          284 S-SKVFSFGVEDAKLRSMTTIVANTT-M--L--------------PGEINKILEPFDMAVGAGYGSKK-ETQIRIA-NFP  343 (362)
T ss_dssp             H-CSSEEESSSCGGGBCSSEEEEEES-S--C--------------HHHHHHHHGGGTEEEEECSGGGT-TTEEEEE-CCT
T ss_pred             H-ccCceeccCChhhcCCceEEEecC-C--C--------------HHHHHHHHHHCCeEEecCccccC-CCEEEEE-CCC
Confidence            9 8899987521    2344445432 1  1              24677888888754433211122 5799999 777


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q psy12303        460 AVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       460 ~~t~~di~~~~~~l~~~~  477 (480)
                      .++++||+++++.|+++.
T Consensus       344 ~~~~e~i~~l~~~l~~~~  361 (362)
T 3ffr_A          344 AHSLEQVHKLVQTLKEKI  361 (362)
T ss_dssp             TSCHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            889999999999999875

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.96  E-value=5.1e-29  Score=246.84  Aligned_cols=359  Identities=15%  Similarity=0.068  Sum_probs=214.9

Q ss_pred             CCCCccccccCCCChHHhHHHHHHHH----cCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHH
Q psy12303         71 GHPMFMNQLSCGLDVVSMAGEWLIAT----ANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAF  146 (480)
Q Consensus        71 ~~p~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al  146 (480)
                      .+..|+++...++.++.+...+....    .++.. .+..+....+..+++++++++++|++++++++|+|||+|+..++
T Consensus        19 ~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~   97 (400)
T 3vax_A           19 SHMTYLDAAATTRVDQRVADIVLHWMTAEFGNAGS-RHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIAL   97 (400)
T ss_dssp             ---CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHH
T ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHHhccCCCcc-cchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHH
Confidence            34568888777766666654333222    12221 23334455677788999999999998778999999999999999


Q ss_pred             HHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccE
Q psy12303        147 LAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPF  226 (480)
Q Consensus       147 ~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~  226 (480)
                      .+++...    ..      ||+..|+++..+|+++...+..+...+.+++.+|.++++.+|+++|+++++++      ++
T Consensus        98 ~~l~~~~----~~------~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~~  161 (400)
T 3vax_A           98 LGLAPYG----ER------TGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLRPD------TL  161 (400)
T ss_dssp             HTTHHHH----HH------HTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCCTT------EE
T ss_pred             HHHHHhh----cc------CCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcCCC------ce
Confidence            8876210    00      33326888888999988877765221228899999999999999999999764      89


Q ss_pred             EEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEE-
Q psy12303        227 FVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIH-  305 (480)
Q Consensus       227 ~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~-  305 (480)
                      +|++++++|++|.+.|+++|.++|++||+++++|++|+.+....+.      ...  +|+++.|+||++ +|.|+|+++ 
T Consensus       162 ~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~------~~~--~d~~~~s~~K~~-g~~g~g~~~~  232 (400)
T 3vax_A          162 LVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDL------TTP--IDMISISGHKIG-APKGVGALVT  232 (400)
T ss_dssp             EEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGG------GSC--CSEEEEETGGGT-SCSSCEEEEE
T ss_pred             EEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcCh------hhc--CcEEEEeHHHhC-CCCceEEEEE
Confidence            9999999999999999999999999999999999999876543321      122  799999999965 477899999 


Q ss_pred             EeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12303        306 FKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKS  384 (480)
Q Consensus       306 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~  384 (480)
                      ++++.+..... ....++......  ..+..+      +... ...++..++..+ .++++++.++..++++++.+.|+.
T Consensus       233 ~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~------~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~  302 (400)
T 3vax_A          233 RRREEMDDERV-PLEPIMFGGGQE--RKLRPG------TLPVPLIMGLAEAAKIF-EAEHAQWQVAAQDLRSRLLAGLAS  302 (400)
T ss_dssp             CBCSSSTTCBC-CCCCSSCSSCTG--GGTSCS------CCCHHHHHHHHHHHHHH-HHSHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ecchhcccccc-ccCceecCCCce--eeeecC------CCCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhhCC
Confidence            88743321000 111111110000  000000      0001 112222333332 346788899999999999999984


Q ss_pred             CCCCeEEecCCc---eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeee-------CCc-----c
Q psy12303        385 MPDKFYLILEPE---MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPL-------NDL-----P  449 (480)
Q Consensus       385 ~~~g~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~-------~~~-----~  449 (480)
                        +++++..++.   .+.+.|...     +.+..++.+.|     . ...+...|..+......       .+.     .
T Consensus       303 --~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~L-----~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~  369 (400)
T 3vax_A          303 --TSFQVNGDQDHVVPHILNLSFE-----DVDAEAFLVTL-----K-DLVAVATGSASTSASFTPSHVLRAMGLPEEAAS  369 (400)
T ss_dssp             --TTCEECSCTTSBCTTEEEEECT-----TCCHHHHHHHH-----H-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHT
T ss_pred             --CCEEEeCCcccCCCCEEEEEeC-----CCCHHHHHHHH-----h-cCcEEEecccccCCCCCccHHHHHcCCCccccC
Confidence              8999875443   234555332     11111222111     1 33444455433322100       010     3


Q ss_pred             cEEEEecc-cCCCCHHHHHHHHHHHHHhhcc
Q psy12303        450 NFFRNIIS-SAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       450 ~~~R~~~~-~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +++|++ + +..+|++|+++++++|++++++
T Consensus       370 ~~iRls-~~~~~~t~e~i~~~~~~l~~~~~~  399 (400)
T 3vax_A          370 KSLRFS-WTPGQATDLDVEELARGVAKLKPS  399 (400)
T ss_dssp             SEEEEE-EEEC--------------------
T ss_pred             ceEEEE-ccCCCCCHHHHHHHHHHHHHHhcc
Confidence            799999 6 7888999999999999988764

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.96  E-value=2.5e-29  Score=246.42  Aligned_cols=303  Identities=15%  Similarity=0.168  Sum_probs=214.4

Q ss_pred             HHHHHHHHHH-HHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEK-MRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~-la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .....+++++ +++++|.+  ++++|+|+|+|+..++.++..              ||+ .|+++..+|+++..++...|
T Consensus        52 ~~~~~~l~~~~la~~~~~~--~v~~~~g~t~a~~~~~~~~~~--------------~gd-~vl~~~~~~~~~~~~~~~~g  114 (371)
T 2e7j_A           52 TPPIHDFIHNQLPKFLGCD--VARVTNGAREAKFAVMHSLAK--------------KDA-WVVMDENCHYSSYVAAERAG  114 (371)
T ss_dssp             -CCHHHHHHTHHHHHTTSS--EEEEESSHHHHHHHHHHHHCC--------------TTC-EEEEETTCCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCC--EEEEeCChHHHHHHHHHHHhC--------------CCC-EEEEccCcchHHHHHHHHcC
Confidence            4455678899 99999987  799999999999999988843              445 88999999999999999998


Q ss_pred             CCCCCeEEee--CCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccc
Q psy12303        190 LGTDNCVEVP--SDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGL  267 (480)
Q Consensus       190 ~~~~~v~~v~--~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~  267 (480)
                      .   +++.+|  .++++.+|+++|++++++...+ .++++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+.
T Consensus       115 ~---~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~-~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~  190 (371)
T 2e7j_A          115 L---NIALVPKTDYPDYAITPENFAQTIEETKKR-GEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGR  190 (371)
T ss_dssp             C---EEEEECCCCTTTCCCCHHHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTT
T ss_pred             C---eEEEeecccCCCCCcCHHHHHHHHHhhccc-CCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCC
Confidence            8   888999  8888999999999999854221 348999999999999999999999999999999999999999976


Q ss_pred             cccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHh-hhcCCcccccccccccCcccCCCCccccCCCC
Q psy12303        268 LLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLIS-CNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH  346 (480)
Q Consensus       268 ~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~  346 (480)
                      ...+....       ++|+++.|+||++++|.++|+++++++ .... .......+...      ..+..      ++..
T Consensus       191 ~~~~~~~~-------~~di~~~s~sK~~~~~~~~G~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~------~~~~  250 (371)
T 2e7j_A          191 MPVSLKEI-------GADFIVGSGHKSMAASGPIGVMGMKEE-WAEIVLRRSEKYKNKE------VELLG------CTAR  250 (371)
T ss_dssp             BCCCHHHH-------TCSEEEEEHHHHSSCCSSCEEEEECTT-TTTTTTCBCSSCTTSB------GGGTT------CCCC
T ss_pred             CCCChhhc-------CCCEEEecCCcCCCCCCCcEEEEEech-hhhhhccccccCcccc------ccccc------CCcC
Confidence            54332223       579999999999998888999998764 3322 22111111100      00000      1111


Q ss_pred             C-CchHHHHHHHHhcHHHHHHHHHHH--HHHHHHHHHHHhcCCCCeEEecCC--ceeEEEEEeecCccCCCchhhHHHHh
Q psy12303        347 N-DIFKLWLQWRAKGDEGFEKQIDRL--MELAEYMVKKIKSMPDKFYLILEP--EMVNVSFWYLPTRVRNMPHEKRLNIL  421 (480)
Q Consensus       347 ~-~~l~~~~~l~~~g~~~~~~~~~~~--~~l~~~l~~~l~~~~~g~~~~~~~--~~~~v~f~~~~~~~~~~~~~~~~~~l  421 (480)
                      . ...++..+++.+..    +..++.  .++++++.+.|++ . +++++.++  ..+.+++.+ + .             
T Consensus       251 ~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~~~~~~~~~~~-~-~-------------  309 (371)
T 2e7j_A          251 GATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEK-L-GIKQLGDNPHNHDLMFFHA-E-V-------------  309 (371)
T ss_dssp             SHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHH-T-TCEEESSSSCCSSEEEEEC-H-H-------------
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-c-CcEEecCCCccCceEEEEC-C-C-------------
Confidence            1 12222233333221    566777  8899999999999 6 99887543  355555533 1 1             


Q ss_pred             hhhhHHHHHHHHhcccEEEeeeee-C---Cc-ccEEE-EecccCC-CCHHHHHHHHHHHHHhhccC
Q psy12303        422 GEITPILKGRMMQAGTMMVGYQPL-N---DL-PNFFR-NIISSAA-VTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       422 ~~~~~~i~~~l~~~g~~~~~~~~~-~---~~-~~~~R-~~~~~~~-~t~~di~~~~~~l~~~~~~l  480 (480)
                         ..++.+.|.+.|+.+.. ... .   +. .+++| ++ ++.. ++++++++++++|+++++++
T Consensus       310 ---~~~~~~~l~~~gi~~~~-~~~~~~~~g~~~~~iRii~-~~~~~~~~~~i~~~~~~l~~~~~~~  370 (371)
T 2e7j_A          310 ---LYEISKKAKGGRFFLYR-ELKSRKIHGIKPGLTRYFK-LSTYGLSDEEVDYVLNAFKEIIEKY  370 (371)
T ss_dssp             ---HHHHHHHSSSGGGHHHH-HHHHTTEECSCTTCCSEEE-EECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHHHCCEEEEe-ccccccccCCCCCceEEEE-eeccCCCHHHHHHHHHHHHHHHHhc
Confidence               13455566666643322 100 0   11 46899 99 6666 89999999999999987653

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.96  E-value=2e-28  Score=235.29  Aligned_cols=383  Identities=14%  Similarity=0.147  Sum_probs=242.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHhhccCCccCCCCCccccccCCCChHHhHHHHHHH-------HcCcCCcchhcChh------
Q psy12303         43 DLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIA-------TANTNMFTYEIAPV------  109 (480)
Q Consensus        43 ~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~------  109 (480)
                      ..++|++|.+.+.|.-.+.++-.    ..+.+|.++...+---.-+.-.+++.       .+..++..-+..|.      
T Consensus        38 ~r~~P~~g~~d~~ie~~l~~la~----mdsnn~~~~~g~GERE~Rv~s~lv~rrh~~~~HGiGRSGd~~~~QPKAaGssl  113 (501)
T 3hl2_A           38 KGKCPENGWDESTLELFLHELAI----MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSL  113 (501)
T ss_dssp             HCCCCSSCCCHHHHHHHHHHHHT----TBGGGCSSCCCCSSCCCCCSCHHHHHHTTTCCSCBSCSSCTTCCCTTBHHHHH
T ss_pred             cCCCCccCCCHHHHHHHHHHHHh----hccCCCcccCCcccchHHHHHHHHHhhccCcccCCCCccccccCCCCccchHH
Confidence            47899999999998888877643    22223444443332221111122221       11222211121221      


Q ss_pred             -hHHHHHHHHHHHHHHhCCCC-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH
Q psy12303        110 -FILMETVVLEKMRQIIGWQG-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV  187 (480)
Q Consensus       110 -~~~~e~~~~~~la~~~g~~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~  187 (480)
                       ..--+..+.+|++.+ |++. ...++++|+|.+++..+.++..+.           .||...|+++..+|.|+.+++.+
T Consensus       114 l~~ltn~l~ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~-----------rpg~d~VIvpRn~HKSv~kAliL  181 (501)
T 3hl2_A          114 LNKITNSLVLDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHK-----------RPKAKYIIWPRIDQKSCFKSMIT  181 (501)
T ss_dssp             HHHHHHHHHHHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHH-----------CTTCCEEEEECCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcc-----------cCCCCEEEEecchHHHHHHHHHH
Confidence             122344567888888 9986 457788888877777776665531           12323788899999999999999


Q ss_pred             cCCCCCCeEEeeC---CCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCc-cccccChHHHHHHHHHcCcEEEeeccc
Q psy12303        188 CGLGTDNCVEVPS---DKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTV-LGAFDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       188 ~g~~~~~v~~v~~---~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~-~G~~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                      +|+   +.++|+.   ++...+|+++++++|++.   +....+++++.+++. .|.++||++|+++|++||+|+|||+||
T Consensus       182 ~Gl---~Pv~V~p~~d~~~~~id~e~le~aI~e~---ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAh  255 (501)
T 3hl2_A          182 AGF---EPVVIENVLEGDELRTDLKAVEAKVQEL---GPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAY  255 (501)
T ss_dssp             TTC---EEEEECEEEETTEEEECHHHHHHHHHHH---CGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTT
T ss_pred             cCC---eEEEEeeeecccccCCCHHHHHHHHHhc---CCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcc
Confidence            999   5566654   345789999999999986   212344444444343 457799999999999999999999999


Q ss_pred             cccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccC
Q psy12303        264 GGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQC  343 (480)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  343 (480)
                      |+...++..... .......+|+++.|+||++.+|.+++++++++++.++....   .|. +            ..    
T Consensus       256 Gah~~~~~~lp~-sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~---~yP-G------------r~----  314 (501)
T 3hl2_A          256 GVQSSKCMHLIQ-QGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISK---MYP-G------------RA----  314 (501)
T ss_dssp             CTTCHHHHHHHH-HHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHH---TSC-S------------CB----
T ss_pred             hhhhhhhhhhHH-HHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHHHHH---hCC-C------------CC----
Confidence            998754432111 01111139999999999999999988888888877665422   221 0            00    


Q ss_pred             CCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC---CeEEecCCce-eEEEEEeecCccCCCchhhHHH
Q psy12303        344 GRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD---KFYLILEPEM-VNVSFWYLPTRVRNMPHEKRLN  419 (480)
Q Consensus       344 ~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~---g~~~~~~~~~-~~v~f~~~~~~~~~~~~~~~~~  419 (480)
                       ..+.++++|+++..+|.+||++++++..+++++|.+.|++ +.   |-+++..|.. -.+++...  .+... .   ..
T Consensus       315 -S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~-la~~~ge~ll~~~~n~is~a~tl~--~~~~~-~---~~  386 (501)
T 3hl2_A          315 -SASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKK-LSEAYNERLLHTPHNPISLAMTLK--TLDEH-R---DK  386 (501)
T ss_dssp             -CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTTCCBCCCTTCSSEEEEECT--TSCTT-T---SC
T ss_pred             -CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcChhhcCCCCCceeEEEecc--ccccc-c---cc
Confidence             1246788999999999999999999999999999999988 53   3455543321 22223221  11110 0   01


Q ss_pred             HhhhhhHHHHHHHHhcccEEEeeee--------eC-------Cc-ccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        420 ILGEITPILKGRMMQAGTMMVGYQP--------LN-------DL-PNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       420 ~l~~~~~~i~~~l~~~g~~~~~~~~--------~~-------~~-~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .+..+...++.+-.. |.-++..+.        +.       .. ..|+-++ +...++++|||.+++.|+++..
T Consensus       387 ~~t~~gs~Lf~r~vs-G~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a-~aiG~~~~~v~~~~~~l~~~~~  459 (501)
T 3hl2_A          387 AVTQLGSMLFTRQVS-GARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAA-SAIGMKMQDVDLFIKRLDRCLK  459 (501)
T ss_dssp             HHHHHHHHHHHTTCC-SCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEE-CCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhcCCC-cceeecCCCceEECCeeecCcccCCCCCCchHHHHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence            122223334443322 211222211        11       11 3578888 8899999999999999998764

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.96  E-value=9e-28  Score=239.16  Aligned_cols=349  Identities=13%  Similarity=0.110  Sum_probs=225.3

Q ss_pred             CCccccccCCCChHHhHHHHHHHHcCcC---Ccc--hhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHH
Q psy12303         73 PMFMNQLSCGLDVVSMAGEWLIATANTN---MFT--YEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFL  147 (480)
Q Consensus        73 p~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~--~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~  147 (480)
                      ..|+++...++.++.+. +.+...+...   ...  +. .+.......++++++++++|.+++++++|+|+|+++..++.
T Consensus        29 ~~yld~~~~~~~~~~v~-~a~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~  106 (416)
T 1qz9_A           29 VIYLDGNSLGARPVAAL-ARAQAVIAEEWGNGLIRSWN-SAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLS  106 (416)
T ss_dssp             CEECCTTTSCCCBTTHH-HHHHHHHHTCCCCCGGGHHH-HTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHH
T ss_pred             eEeecCCCcCCCcHHHH-HHHHHHHHHHHhccCccccc-hhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHH
Confidence            35677655555555555 3333333211   111  11 11223555678899999999987789999999999988888


Q ss_pred             HHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH----c--CCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHC
Q psy12303        148 AARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV----C--GLGTDNCVEVPSDKRGRLIPSELERLVLERKAK  221 (480)
Q Consensus       148 ~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~----~--g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~  221 (480)
                      +++...    . .+   .||+.+|+++..+|+++..++..    .  |.   +++.+|.       +++|+++++++   
T Consensus       107 ~~~~~~----~-~~---~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~---~~~~v~~-------~~~l~~~i~~~---  165 (416)
T 1qz9_A          107 AALRVQ----A-TR---SPERRVIVTETSNFPTDLYIAEGLADMLQQGY---TLRLVDS-------PEELPQAIDQD---  165 (416)
T ss_dssp             HHHHHH----H-HH---STTCCEEEEETTSCHHHHHHHHHHHHHHCSSC---EEEEESS-------GGGHHHHCSTT---
T ss_pred             hhcccc----c-cc---CCCCcEEEEcCCCCCchHHHHHHHHHHhcCCc---eEEEeCc-------HHHHHHHhCCC---
Confidence            775210    0 00   04454688888899987665433    3  65   7778876       77888888653   


Q ss_pred             CCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccc
Q psy12303        222 GDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQC  301 (480)
Q Consensus       222 ~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~  301 (480)
                         +++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+....+....       ++|++++|+||+++++.++
T Consensus       166 ---~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~-------~~d~~~~s~~K~l~~g~~~  235 (416)
T 1qz9_A          166 ---TAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQA-------GADYAIGCTYKYLNGGPGS  235 (416)
T ss_dssp             ---EEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHH-------TCSEEEECSSSTTCCCTTC
T ss_pred             ---ceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhc-------CCCEEEecCcccCCCCCCC
Confidence               899999999999999999999999999999999999999976554332222       5899999999998777777


Q ss_pred             -eEEEEeCchhhHhhhcCCccccccccc-ccCcccCCC--CccccCC-CCC-CchHHHHHHHHhcHHHHHHHHHHHHHHH
Q psy12303        302 -STIHFKQDGLLISCNQMSAEYLFMQDK-LYDVRYDTG--DKVIQCG-RHN-DIFKLWLQWRAKGDEGFEKQIDRLMELA  375 (480)
Q Consensus       302 -g~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~--~~~~~~~-r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~  375 (480)
                       |+++++++ ...........|...... .....+.+.  ......+ ... ...++..+++.+..++++++.++..+++
T Consensus       236 ~g~l~~~~~-~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~  314 (416)
T 1qz9_A          236 QAFVWVSPQ-LCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALT  314 (416)
T ss_dssp             CCEEEECTT-TTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECHH-HHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence             99987654 333222211122111000 000000000  0011111 111 2234445566554457788899999999


Q ss_pred             HHHHHHHhcCC-C--CeEEecCC----ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCc
Q psy12303        376 EYMVKKIKSMP-D--KFYLILEP----EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDL  448 (480)
Q Consensus       376 ~~l~~~l~~~~-~--g~~~~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~  448 (480)
                      +++.+.|++ . +  +++++.++    ..+++++.+ +.                 ..++.+.|.++|+. +..   .+ 
T Consensus       315 ~~l~~~L~~-~~~~~g~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~l~~~l~~~gi~-~~~---~~-  370 (416)
T 1qz9_A          315 DLFIELVEQ-RCAAHELTLVTPREHAKRGSHVSFEH-PE-----------------GYAVIQALIDRGVI-GDY---RE-  370 (416)
T ss_dssp             HHHHHHHHH-HHTTSCCEECSCSSGGGBCSEEEEEC-TT-----------------HHHHHHHHHTTTEE-CEE---ET-
T ss_pred             HHHHHHHHh-hccCCCeEEeCCCCHHHcCCEEEEec-CC-----------------HHHHHHHHHhCCcE-ecc---CC-
Confidence            999999988 5 5  89886543    244555532 11                 13566778888843 322   13 


Q ss_pred             ccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        449 PNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       449 ~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+++|+++.++.+|++||++++++|++++++
T Consensus       371 ~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~  401 (416)
T 1qz9_A          371 PRIMRFGFTPLYTTFTEVWDAVQILGEILDR  401 (416)
T ss_dssp             TTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence            5799999433589999999999999987653

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.96  E-value=1.5e-27  Score=232.57  Aligned_cols=333  Identities=17%  Similarity=0.129  Sum_probs=222.7

Q ss_pred             ccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcC
Q psy12303         75 FMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMF  154 (480)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~  154 (480)
                      ||+....+..++.+. +.+...+..    |....+...+.+++++++++++|.+++++++|+|||+|+..++.+++.   
T Consensus        17 ~l~~~~~~~~~~~v~-~a~~~~~~~----~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~---   88 (359)
T 1svv_A           17 SFVNDYSVGMHPKIL-DLMARDNMT----QHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR---   88 (359)
T ss_dssp             ECSCSCSSCCCHHHH-HHHHHHTTC----CCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC---
T ss_pred             EecCCCcCCCCHHHH-HHHHHHHhh----ccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhC---
Confidence            454433344445444 555554442    333344567888999999999999887899999999999999988854   


Q ss_pred             chhHhcCCCccCCceEEEecCCCchhHHH--HHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHH-HCCCccEEEEec
Q psy12303        155 PTYKEKGLSAIKGQLVMFTSDQCHYSVRS--CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERK-AKGDIPFFVNCT  231 (480)
Q Consensus       155 ~~~~~~g~~~~~g~~~vl~~~~~h~s~~~--~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~-~~~~~~~~v~~~  231 (480)
                                 ||+ .|+++..+|+++..  .+...|.   +++.+|.+ ++.+|+++|++++++.. .++.++++|+++
T Consensus        89 -----------~gd-~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~  152 (359)
T 1svv_A           89 -----------PWE-AVIATQLGHISTHETGAIEATGH---KVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYIS  152 (359)
T ss_dssp             -----------TTE-EEEEETTSHHHHSSTTHHHHTTC---CEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEE
T ss_pred             -----------CCC-EEEEcccchHHHHHHHHHhcCCC---eeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEE
Confidence                       445 88999999999887  4777777   88999986 78899999999997641 233458999999


Q ss_pred             cCCCccccccC---hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCC-CCCccceeCccccCCCcccceEEEEe
Q psy12303        232 SGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGI-ERADSVTWNPHKLMGTLLQCSTIHFK  307 (480)
Q Consensus       232 ~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~-~~~D~~~~s~hK~~~~p~~~g~~~~~  307 (480)
                      ++ |++|.+.|   +++|.++|++||+++|+|++|.++......... ...++ ..+|++++++||+++ |.++|+++++
T Consensus       153 ~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~d~~~~s~~K~g~-~~~~g~l~~~  229 (359)
T 1svv_A          153 NT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDL-TLADIARLTDMFYIGATKAGG-MFGEALIILN  229 (359)
T ss_dssp             SS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCC-CHHHHHHHCSEEEEECTTTTC-SSCEEEEECS
T ss_pred             cC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcch-hhhhhhhcCCEEEEecccCCC-CCceEEEEEc
Confidence            98 68999988   899999999999999999999543221100000 00000 157999999999855 7888888875


Q ss_pred             CchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12303        308 QDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD  387 (480)
Q Consensus       308 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~  387 (480)
                      + +.......    +......           ....+  ......+  ...+...++++..++..++++++.+.| + .+
T Consensus       230 ~-~~~~~~~~----~~~~~~~-----------~~~~~--~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~l~~~L-~-~~  287 (359)
T 1svv_A          230 D-ALKPNARH----LIKQRGA-----------LMAKG--WLLGIQF--EVLMKDNLFFELGAHSNKMAAILKAGL-E-AC  287 (359)
T ss_dssp             G-GGCTTHHH----HHHHTTC-----------CCTTT--HHHHHHH--HHHTSTTHHHHHHHHHHHHHHHHHHHH-H-HT
T ss_pred             c-cHHHHHHH----HHhcCCc-----------ccccc--hhhHHHH--HHHHhhhhHHHHHHHHHHHHHHHHHHh-c-cC
Confidence            4 33322211    0000000           00000  0011111  123444567788899999999999999 5 58


Q ss_pred             CeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeCCcccEEEEecccCCCCHHHH
Q psy12303        388 KFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPLNDLPNFFRNIISSAAVTEGDI  466 (480)
Q Consensus       388 g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di  466 (480)
                      +++++.+.. ..+++...+                   .++.++|.++ |+.+..  ......+++|++ ++..++++||
T Consensus       288 ~~~~~~~~~-~~~~~~~~~-------------------~~~~~~l~~~~gi~v~~--~~~~~~~~iRi~-~~~~~~~~~i  344 (359)
T 1svv_A          288 GIRLAWPSA-SNQLFPILE-------------------NTMIAELNNDFDMYTVE--PLKDGTCIMRLC-TSWATEEKEC  344 (359)
T ss_dssp             TCCBSSCCS-SSEECBEEE-------------------HHHHHHHTTTEECEEEE--EETTTEEEEEEE-CCTTCCHHHH
T ss_pred             CeEEccCCc-cceEEEEcC-------------------HHHHHHHHHhcCEEEEe--cccCCCceEEEE-ccCcCCHHHH
Confidence            988764443 333321111                   2466788888 866522  212225799999 8888999999


Q ss_pred             HHHHHHHHHhhcc
Q psy12303        467 DFLLTEMDRLGHD  479 (480)
Q Consensus       467 ~~~~~~l~~~~~~  479 (480)
                      ++++++|++++++
T Consensus       345 ~~~~~~l~~~~~~  357 (359)
T 1svv_A          345 HRFVEVLKRLVAS  357 (359)
T ss_dssp             HHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998765

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.96  E-value=1.9e-27  Score=234.73  Aligned_cols=333  Identities=10%  Similarity=0.030  Sum_probs=228.3

Q ss_pred             hHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhC--CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCC
Q psy12303         85 VVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIG--WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGL  162 (480)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~  162 (480)
                      ++.+. +.+...+......|...  ..++++++++++++.+|  .++.++++|+|+|+|+..++.++..           
T Consensus        42 ~~~v~-~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~~-----------  107 (391)
T 3dzz_A           42 APEIM-ASMEEKLKVAAFGYESV--PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTS-----------  107 (391)
T ss_dssp             CHHHH-HHHHHHHTTCCCCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHSC-----------
T ss_pred             CHHHH-HHHHHHHhcCcCCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhCC-----------
Confidence            34444 55555554433444322  57889999999999999  5567899999999999999988743           


Q ss_pred             CccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC---CCCCCHHHHHHHHH-HHHHCCCccEEEEeccCCCccc
Q psy12303        163 SAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK---RGRLIPSELERLVL-ERKAKGDIPFFVNCTSGTTVLG  238 (480)
Q Consensus       163 ~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~---~~~~d~~~L~~~i~-~~~~~~~~~~~v~~~~~~~~~G  238 (480)
                         ||+ .|+++..+|.++..++...|.   +++.+|.+.   ++.+|+++|+++++ ++      +++|++++++|++|
T Consensus       108 ---~gd-~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~~~l~~~l~~~~------~~~v~i~~p~nptG  174 (391)
T 3dzz_A          108 ---PGD-QILVQEPVYNMFYSVIEGNGR---RVISSDLIYENSKYSVNWADLEEKLATPS------VRMMVFCNPHNPIG  174 (391)
T ss_dssp             ---TTC-EEEECSSCCHHHHHHHHHTTC---EEEECCCEEETTEEECCHHHHHHHHTSTT------EEEEEEESSBTTTT
T ss_pred             ---CCC-eEEECCCCcHHHHHHHHHcCC---EEEEeeeeecCCceeecHHHHHHHHhccC------ceEEEEECCCCCCC
Confidence               445 889999999999999999988   788888852   34599999999997 33      89999999999999


Q ss_pred             cc---cChHHHHHHHHHcCcEEEeeccccccccccccccCcccC-CCCCCc--cceeCccccCC-CcccceEEEEeCchh
Q psy12303        239 AF---DPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLT-GIERAD--SVTWNPHKLMG-TLLQCSTIHFKQDGL  311 (480)
Q Consensus       239 ~~---~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~D--~~~~s~hK~~~-~p~~~g~~~~~~~~~  311 (480)
                      .+   .++++|.++|++||+++|+|++|+.+......... ... ..+..|  +++.|+||+++ .+.++|+++++++++
T Consensus       175 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~  253 (391)
T 3dzz_A          175 YAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITP-AFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDL  253 (391)
T ss_dssp             BCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCC-GGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHH
T ss_pred             cccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCcee-hhhcCccccCcEEEEEeChhhccccchhheEEEECCHHH
Confidence            99   77999999999999999999999976653221111 111 111255  88899999997 456789998876665


Q ss_pred             hHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Q psy12303        312 LISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYL  391 (480)
Q Consensus       312 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~  391 (480)
                      ..........+..              +   ........++..++.. +.+.++++.++..++++++.+.|++++|++++
T Consensus       254 ~~~~~~~~~~~~~--------------~---~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  315 (391)
T 3dzz_A          254 RARAEESFFLAGI--------------G---EPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKV  315 (391)
T ss_dssp             HHHHHHHHHHHTC--------------S---SCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred             HHHHHHHHHhhcc--------------C---CCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEE
Confidence            5443211000000              0   0011122233333433 45668888899999999999999873479987


Q ss_pred             ecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHH
Q psy12303        392 ILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFL  469 (480)
Q Consensus       392 ~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~  469 (480)
                      . .+..+.+.+...+..  +.+           ..++.++|. +.|+.+.....+.. ..+++|++ ++  +++++|+++
T Consensus       316 ~-~~~~~~~~~~~~~~~--~~~-----------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis-~~--~~~~~i~~~  378 (391)
T 3dzz_A          316 L-DSNASYLAWVDISAL--GMN-----------AEDFCKYLREKTGLIISAGNGYRGNGHEFVRIN-LA--CPKELVIDG  378 (391)
T ss_dssp             C-CCCBSSEEEEECGGG--CSC-----------HHHHHHHHHHHHCEECEESGGGCTTGGGEEEEE-CC--SCHHHHHHH
T ss_pred             e-ccCceEEEEEehhhc--CCC-----------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEE-ec--CCHHHHHHH
Confidence            5 455555543322211  000           245677785 67744433221211 15899999 44  689999999


Q ss_pred             HHHHHHhhccC
Q psy12303        470 LTEMDRLGHDL  480 (480)
Q Consensus       470 ~~~l~~~~~~l  480 (480)
                      ++.|+++++++
T Consensus       379 l~~l~~~l~~~  389 (391)
T 3dzz_A          379 MQRLKQGVLNL  389 (391)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            99999987653

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.95  E-value=3.4e-27  Score=236.19  Aligned_cols=360  Identities=15%  Similarity=0.111  Sum_probs=226.0

Q ss_pred             CCccccccCCCChHHhHHHHHHHHcC--cCC-cchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHH
Q psy12303         73 PMFMNQLSCGLDVVSMAGEWLIATAN--TNM-FTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAA  149 (480)
Q Consensus        73 p~~~~~~~~~~~~~~~~~~~l~~~~~--~~~-~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~  149 (480)
                      ..|+++..+++.++.+...+.....+  .+. ..|..++...+...++++++++++|+++.++++|+|+|+|+..++.++
T Consensus        19 ~~~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~   98 (432)
T 3a9z_A           19 KVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHST   98 (432)
T ss_dssp             CEECBTTTCCCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHH
T ss_pred             cEEeeCCccCCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHH
Confidence            45777766666666665433332211  111 223334455677788999999999998778999999999999999988


Q ss_pred             HHhcCchhHhcCCC------ccCCceEEEecCCCchhHHHHHHH----cCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHH
Q psy12303        150 RHKMFPTYKEKGLS------AIKGQLVMFTSDQCHYSVRSCAAV----CGLGTDNCVEVPSDK-RGRLIPSELERLVLER  218 (480)
Q Consensus       150 ~~~~~~~~~~~g~~------~~~g~~~vl~~~~~h~s~~~~~~~----~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~  218 (480)
                      ...+.......|..      ..++...|+++..+|+++..++..    .|.   +++.+|.++ ++.+|+++|+++++++
T Consensus        99 ~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~---~v~~v~~~~~~~~~d~~~l~~~i~~~  175 (432)
T 3a9z_A           99 VRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVA---EVTFVPVSKVNGQVEVEDILAAVRPT  175 (432)
T ss_dssp             HHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSC---EEEEECCCTTTSSCCHHHHHHTCCTT
T ss_pred             HhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCc---EEEEEecCcccCCcCHHHHHHhccCC
Confidence            52110000011210      011123788999999998777654    355   888999886 7889999999988754


Q ss_pred             HHCCCccEEEEeccCCCccccccChHHHHHHHHHcC----------cEEEeeccccccccccccccCcccCCCCCCccce
Q psy12303        219 KAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYN----------MWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVT  288 (480)
Q Consensus       219 ~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~----------~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~  288 (480)
                            +++|++++++|++|.+.|+++|.++|+++|          +++|+|++|+.+....+....       ++|+++
T Consensus       176 ------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~-------~~d~~~  242 (432)
T 3a9z_A          176 ------TCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDL-------GVDFLT  242 (432)
T ss_dssp             ------EEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHH-------CCSEEE
T ss_pred             ------ceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhc-------CCCEEE
Confidence                  899999999999999999999999999999          999999999876543332222       679999


Q ss_pred             eCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC-CchHHHHHHHHhcHHHHHHH
Q psy12303        289 WNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQ  367 (480)
Q Consensus       289 ~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~  367 (480)
                      .|+||+++ |. +|++++++......   ..+.+. +....  ..+..+      +... ...++..+++.+ .++++++
T Consensus       243 ~s~~K~~g-~~-~G~~~~~~~~~~~~---~~~~~~-~~~~~--~~~~~~------~~~~~~~~a~~aal~~~-~~~~~~~  307 (432)
T 3a9z_A          243 IVGHKFYG-PR-IGALYVRGVGKLTP---LYPMLF-GGGQE--RNFRPG------TENTPMIAGLGKAADLV-SENCETY  307 (432)
T ss_dssp             EEGGGTTC-CS-CEEEEETTBTTTBC---CCCSCC-SSCGG--GGTSCS------CCCHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             EehhHhcC-Cc-ceEEEEccccccCC---cCceee-cCCcc--ccccCC------CcCHHHHHHHHHHHHHH-HhhHHHH
Confidence            99999975 66 99999876531111   111111 11000  001111      1111 122333344433 3577888


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCeEEe--cC----Cc-eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHH----Hhcc
Q psy12303        368 IDRLMELAEYMVKKIKSMPDKFYLI--LE----PE-MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRM----MQAG  436 (480)
Q Consensus       368 ~~~~~~l~~~l~~~l~~~~~g~~~~--~~----~~-~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l----~~~g  436 (480)
                      .++..++++++.+.|++ ++|+++.  .+    .. ...++|.+.....   +.           .++.+.+    .+.|
T Consensus       308 ~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------~~~~~~l~~i~~~~G  372 (432)
T 3a9z_A          308 EAHMRDIRDYLEERLEA-EFGKRIHLNSRFPGVERLPNTCNFSIQGSQL---RG-----------YMVLAQCQTLLASVG  372 (432)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHGGGEEESSCCTTCCBCTTEEEEEECSTTC---CH-----------HHHHHHCSSEECBSS
T ss_pred             HHHHHHHHHHHHHHHHh-ccCCcEEEeCCCCcccCCCCEEEEEeCCCCC---cH-----------HHHHHHhcCeEEecc
Confidence            99999999999999988 6665432  32    11 2345565432111   11           1222222    1112


Q ss_pred             cEEEeee--------eeCCc-----ccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        437 TMMVGYQ--------PLNDL-----PNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       437 ~~~~~~~--------~~~~~-----~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ..+....        ...+.     .+++|++ ++..+|++|++++++.|++++++
T Consensus       373 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis-~~~~~t~eei~~~~~~l~~~~~~  427 (432)
T 3a9z_A          373 ASCHSDHEDRPSPVLLSCGIPVDVARNAVRLS-VGRSTTRAEVDLIVQDLKQAVNQ  427 (432)
T ss_dssp             CGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEE-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCCccHHHHhcCCCccccCceEEEE-cCCCCCHHHHHHHHHHHHHHHHH
Confidence            1110000        00010     3699999 77888999999999999987653

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.95  E-value=6.8e-27  Score=230.60  Aligned_cols=322  Identities=11%  Similarity=0.108  Sum_probs=223.4

Q ss_pred             HHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCc
Q psy12303         91 EWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQ  168 (480)
Q Consensus        91 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~  168 (480)
                      +.+...+......|...++..++++++.+++.+.+|.  +++++++|+|||+|+..++.++..              ||+
T Consensus        50 ~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~--------------~gd  115 (388)
T 1j32_A           50 EAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIE--------------PGD  115 (388)
T ss_dssp             HHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCC--------------TTC
T ss_pred             HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcC--------------CCC
Confidence            4444444332334554556788999999999998886  456899999999999999988743              445


Q ss_pred             eEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---h
Q psy12303        169 LVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---I  243 (480)
Q Consensus       169 ~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l  243 (480)
                       .|+++..+|+++..+++..|.   +++.+|.++  ++.+|+++|+++++++      +++|++++++|++|.+.|   +
T Consensus       116 -~vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l  185 (388)
T 1j32_A          116 -EVIIPAPFWVSYPEMVKLAEG---TPVILPTTVETQFKVSPEQIRQAITPK------TKLLVFNTPSNPTGMVYTPDEV  185 (388)
T ss_dssp             -EEEEESSCCTHHHHHHHHTTC---EEEEECCCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHH
T ss_pred             -EEEEcCCCChhHHHHHHHcCC---EEEEecCCcccCCCCCHHHHHHhcCcC------ceEEEEeCCCCCCCcCCCHHHH
Confidence             788889999999999999888   788899875  5789999999998754      889999999999999954   9


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccccCcccCCC----CCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcC
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGI----ERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQM  318 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~----~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~  318 (480)
                      ++|.++|++||+++|+|++|+.+........  .+..+    .+.|+++.|+||+++.| ..+|++++++ +........
T Consensus       186 ~~i~~~~~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~-~~~~~l~~~  262 (388)
T 1j32_A          186 RAIAQVAVEAGLWVLSDEIYEKILYDDAQHL--SIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPV-PLVKAATKI  262 (388)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTCBCTTCCCC--CGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCH-HHHHHHHHH
T ss_pred             HHHHHHHHHcCCEEEEEccchhcccCCCCCC--CHHHccccccCCEEEEeechhccCCcccceEEEEeCH-HHHHHHHHH
Confidence            9999999999999999999998654221110  01111    24688999999999733 4589988654 343332211


Q ss_pred             CcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc
Q psy12303        319 SAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE  396 (480)
Q Consensus       319 ~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~  396 (480)
                      ...+               .+      ....+..++++..+  +.+.++++.++..++++++.+.|++ .++++++ .|.
T Consensus       263 ~~~~---------------~~------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~-~~~  319 (388)
T 1j32_A          263 QGHS---------------TS------NVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNA-MPGLECP-KPD  319 (388)
T ss_dssp             HHTT---------------TC------SCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHT-CTTCBCC-CCC
T ss_pred             Hhhc---------------cc------CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhh-CCCCccc-CCC
Confidence            0000               00      01233333333333  4566788889999999999999999 8898875 455


Q ss_pred             eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        397 MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       397 ~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                      .+.+++...+..  +.+           ..++.+.|.+ .|+.+.....+.. .+++|+++ .  +++++|+++++.|++
T Consensus       320 ~~~~~~~~~~~~--~~~-----------~~~~~~~l~~~~gi~v~~g~~~~~-~~~iRis~-~--~~~~~i~~~~~~l~~  382 (388)
T 1j32_A          320 GAFYMFPSIAKT--GRS-----------SLDFCSELLDQHQVATVPGAAFGA-DDCIRLSY-A--TDLDTIKRGMERLEK  382 (388)
T ss_dssp             BTTEECCBCGGG--TCC-----------HHHHHHHHHHHHCEECEEGGGGTC-TTBEEEEC-C--SCHHHHHHHHHHHHH
T ss_pred             eeEEEEEecCCC--CCC-----------HHHHHHHHHHhCCEEEeChhhhCC-CCcEEEEe-c--CCHHHHHHHHHHHHH
Confidence            554444222210  000           2456677775 5744433222222 47899994 3  689999999999998


Q ss_pred             hhcc
Q psy12303        476 LGHD  479 (480)
Q Consensus       476 ~~~~  479 (480)
                      ++++
T Consensus       383 ~l~~  386 (388)
T 1j32_A          383 FLHG  386 (388)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.95  E-value=2.3e-27  Score=231.06  Aligned_cols=301  Identities=18%  Similarity=0.195  Sum_probs=206.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH--HHHc
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC--AAVC  188 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~--~~~~  188 (480)
                      .....++++++++++| ++.++++|+|||+|+..++.+++.              ||+ .|+++..+|++...+  +..+
T Consensus        42 ~~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al~~~~~--------------~gd-~vi~~~~~~~~~~~~~~~~~~  105 (356)
T 1v72_A           42 DELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLSAMTP--------------PWG-NIYCHPASHINNDECGAPEFF  105 (356)
T ss_dssp             SHHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHHTSCC--------------TTE-EEEECTTSHHHHSSTTHHHHH
T ss_pred             chHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHHHHhcC--------------CCC-EEEEcCccchhhhhchHHHHH
Confidence            4567788999999999 544589999999999999887643              445 788899999988766  7777


Q ss_pred             --CCCCCCeEEeeCCCCCCCCHHHHHH-HHHHHH-HCCCccEEEEeccCCCcccc---ccChHHHHHHHHHcCcEEEeec
Q psy12303        189 --GLGTDNCVEVPSDKRGRLIPSELER-LVLERK-AKGDIPFFVNCTSGTTVLGA---FDPIEEIADICQKYNMWLHVDA  261 (480)
Q Consensus       189 --g~~~~~v~~v~~~~~~~~d~~~L~~-~i~~~~-~~~~~~~~v~~~~~~~~~G~---~~~l~~I~~i~~~~~~~l~vD~  261 (480)
                        |.   +++.+|.+ ++.+|+++|++ ++++.. ..+.++++|+++++++ +|.   .+++++|.++|++||+++|+|+
T Consensus       106 ~~g~---~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~  180 (356)
T 1v72_A          106 SNGA---KLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDG  180 (356)
T ss_dssp             TTSC---EEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             hCCc---EEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence              77   78888875 57899999999 886421 1223589999999865 999   5668999999999999999999


Q ss_pred             cccccccccccccCcccCCC-CCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcc
Q psy12303        262 AWGGGLLLSKKYRHPRLTGI-ERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKV  340 (480)
Q Consensus       262 a~~~~~~~~~~~~~~~~~~~-~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  340 (480)
                      +|+.+......... ...++ .++|++++++||+ +.|.|+|+++. +++.......     +...         .+.  
T Consensus       181 a~~~~~~~~~~~~~-~~~~~~~~~d~~~~s~sK~-g~~~G~g~~~~-~~~~~~~~~~-----~~~~---------~~~--  241 (356)
T 1v72_A          181 SRFANALVSLGCSP-AEMTWKAGVDALSFGATKN-GVLAAEAIVLF-NTSLATEMSY-----RRKR---------AGH--  241 (356)
T ss_dssp             TTHHHHHHHHTCCT-TTTTGGGTCCEEEECCGGG-TCSSCEEEEES-SGGGHHHHHH-----HHHH---------TTC--
T ss_pred             hhhHhHhccCCCCH-HHhhhhhcCCEEEEecccC-CCcCccEEEEE-CHHHHhhHHH-----Hhhc---------cCc--
Confidence            99865321111111 11111 2678999999999 56777778776 5554443221     0000         000  


Q ss_pred             ccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHH
Q psy12303        341 IQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNI  420 (480)
Q Consensus       341 ~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~  420 (480)
                      .   ...........+..+..+.+.++.++..++++++.+.|++ ++|+++..++....+++.+ +              
T Consensus       242 ~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~-~--------------  302 (356)
T 1v72_A          242 L---SSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEG-LGGVEVLGGTEANILFCRL-D--------------  302 (356)
T ss_dssp             C---CSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTT-CTTEEEESCCCSSEEEEEE-C--------------
T ss_pred             h---hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh-CCCcEEccCCCccEEEEEc-C--------------
Confidence            0   0011222333344444445666788889999999999999 8899987554444444432 1              


Q ss_pred             hhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        421 LGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       421 l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                           .++.++|.++|+.+... .+ + .+++|++ ++..+|++++++++++|++++++
T Consensus       303 -----~~~~~~l~~~gi~v~~g-~~-~-~~~iRi~-~~~~~~~~~i~~~~~~l~~~l~~  352 (356)
T 1v72_A          303 -----SAMIDALLKAGFGFYHD-RW-G-PNVVRFV-TSFATTAEDVDHLLNQVRLAADR  352 (356)
T ss_dssp             -----HHHHHHHHHTTCBCBCS-SS-S-TTEEEEE-CCTTCCHHHHHHHHHHHHHTC--
T ss_pred             -----HHHHHHHHhcCeEEecc-cc-C-CCeEEEE-ecCCCCHHHHHHHHHHHHHHHHh
Confidence                 14566777778544321 22 2 4799999 88889999999999999988754

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.95  E-value=1.9e-26  Score=230.26  Aligned_cols=301  Identities=16%  Similarity=0.134  Sum_probs=209.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      .....++++++++++|.+  ..+++++||+||..++.++.+              +|+ .|+++..+|.++..++...|.
T Consensus       108 ~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~al~~l~~--------------~gd-~vl~~~~~h~~~~~~~~~~g~  170 (427)
T 2w8t_A          108 FHDHMEVEQALRDFYGTT--GAIVFSTGYMANLGIISTLAG--------------KGE-YVILDADSHASIYDGCQQGNA  170 (427)
T ss_dssp             CHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHSC--------------TTC-EEEEETTCCHHHHHHHHHSCS
T ss_pred             cHHHHHHHHHHHHHhCCC--ceEEecCcHHHHHHHHHHhcC--------------CCC-EEEECCcccHHHHHHHHHcCC
Confidence            466677888899999986  478888899999998887643              445 888999999999999999887


Q ss_pred             CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccc
Q psy12303        191 GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLS  270 (480)
Q Consensus       191 ~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~  270 (480)
                         +++.+|.     +|+++|++++++...  .++++|++++++|++|.+.|+++|.++|++||+++|+|++|+++.+..
T Consensus       171 ---~~~~~~~-----~d~~~le~~l~~~~~--~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~  240 (427)
T 2w8t_A          171 ---EIVRFRH-----NSVEDLDKRLGRLPK--EPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGP  240 (427)
T ss_dssp             ---EEEEECT-----TCHHHHHHHHHTSCS--SSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSST
T ss_pred             ---eeEEeCC-----CCHHHHHHHHHhccC--CCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCC
Confidence               7777774     599999999976211  148999999999999999999999999999999999999999876531


Q ss_pred             ccccCcccCCC-CCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC-CC
Q psy12303        271 KKYRHPRLTGI-ERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-ND  348 (480)
Q Consensus       271 ~~~~~~~~~~~-~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-~~  348 (480)
                      .........++ .++|+++.++||+++ +.| |+++.+ +++.........+|...                 ++-. ..
T Consensus       241 ~g~~~~~~~~~~~~~di~~~s~sK~~g-~~g-G~v~~~-~~l~~~l~~~~~~~~~~-----------------~~~~~~~  300 (427)
T 2w8t_A          241 NGRGVYEAQGLEGQIDFVVGTFSKSVG-TVG-GFVVSN-HPKFEAVRLACRPYIFT-----------------ASLPPSV  300 (427)
T ss_dssp             TSCCHHHHTTCTTCCSEEEEESSSTTC-SCC-EEEEEC-CTTGGGGGGTCHHHHSS-----------------CCCCHHH
T ss_pred             CCCchHhhcCCCcCCcEEEecchhhhc-cCC-CEEEeC-HHHHHHHHHhccccccc-----------------CCCCHHH
Confidence            11000011222 267999999999998 344 777764 44444333221222211                 0100 11


Q ss_pred             chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC-ceeEEEEEeecCccCCCchhhHHHHhhhhhHH
Q psy12303        349 IFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP-EMVNVSFWYLPTRVRNMPHEKRLNILGEITPI  427 (480)
Q Consensus       349 ~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~  427 (480)
                      ..++..+++.+.  .++++.++..++++++.+.|++ . |+++..++ ...++.+.+ +..            .  ...+
T Consensus       301 ~aa~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~-~~~------------~--~~~~  361 (427)
T 2w8t_A          301 VATATTSIRKLM--TAHEKRERLWSNARALHGGLKA-M-GFRLGTETCDSAIVAVML-EDQ------------E--QAAM  361 (427)
T ss_dssp             HHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHH-H-TCEESCSSCCSSEEEEEE-SSH------------H--HHHH
T ss_pred             HHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHH-c-CCcccCCCCCCCEEEEEE-CCH------------H--HHHH
Confidence            222223444332  2467788999999999999999 5 88886455 555555543 211            0  0246


Q ss_pred             HHHHHHhcccEEEeeeeeCC---cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        428 LKGRMMQAGTMMVGYQPLND---LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       428 i~~~l~~~g~~~~~~~~~~~---~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.+.|.++|+. +.+....+   ..+++|++ ++..+|++||++++++|++++++
T Consensus       362 l~~~L~~~Gi~-v~~~~~~~~~~~~~~lRi~-~~~~~t~e~i~~~~~~l~~~l~~  414 (427)
T 2w8t_A          362 MWQALLDGGLY-VNMARPPATPAGTFLLRCS-ICAEHTPAQIQTVLGMFQAAGRA  414 (427)
T ss_dssp             HHHHHHHTTEE-CEEECTTTSCTTCEEEEEE-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCeE-EeeeCCCCCCCCCeEEEEE-eCCCCCHHHHHHHHHHHHHHHHH
Confidence            77888888854 33322221   13699999 77889999999999999987653

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.95  E-value=1.2e-26  Score=229.00  Aligned_cols=324  Identities=14%  Similarity=0.127  Sum_probs=221.0

Q ss_pred             HHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCC-eEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC
Q psy12303         91 EWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGD-SILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG  167 (480)
Q Consensus        91 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~-~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g  167 (480)
                      +.+...+......|....+..++++.+.+++.+.+|.  ++++ +++|+|||+|+..++.++..              ||
T Consensus        46 ~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~--------------~g  111 (389)
T 1gd9_A           46 EYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLK--------------DG  111 (389)
T ss_dssp             HHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCC--------------TT
T ss_pred             HHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhCC--------------CC
Confidence            4444444332334544456788999999999888894  5668 99999999999998876632              44


Q ss_pred             ceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---
Q psy12303        168 QLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---  242 (480)
Q Consensus       168 ~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---  242 (480)
                      + .|+++.++|+++..++...|.   +++.+|.++  ++.+|+++|+++++++      +++|++++++|++|.+.|   
T Consensus       112 d-~vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~  181 (389)
T 1gd9_A          112 E-EVLIPTPAFVSYAPAVILAGG---KPVEVPTYEEDEFRLNVDELKKYVTDK------TRALIINSPCNPTGAVLTKKD  181 (389)
T ss_dssp             C-EEEEEESCCTTHHHHHHHHTC---EEEEEECCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHH
T ss_pred             C-EEEEcCCCchhHHHHHHHCCC---EEEEeccCCccCCCCCHHHHHHhcCcC------ceEEEEECCCCCCCcCCCHHH
Confidence            5 788888999999999999988   788999875  4679999999998753      889999999999999974   


Q ss_pred             hHHHHHHHHHcCcEEEeeccccccccccccc-cCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCc
Q psy12303        243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKY-RHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSA  320 (480)
Q Consensus       243 l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~-~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~  320 (480)
                      +++|.++|++||+++|+|++|+.+....... ....+.+..+.|+++.|+||+++.| ..+|+++++ +...........
T Consensus       182 l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~  260 (389)
T 1gd9_A          182 LEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAP-SWIIERMVKFQM  260 (389)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECC-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEEC-HHHHHHHHHHHh
Confidence            9999999999999999999999876532101 0101223336789999999999743 457988875 444433321110


Q ss_pred             ccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHH--HHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDE--GFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE  396 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~--~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~  396 (480)
                      .+.               +      ....+...++...+  +.+  .++++.++..++++++.+.|++ . |+++. .|.
T Consensus       261 ~~~---------------~------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~  316 (389)
T 1gd9_A          261 YNA---------------T------CPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNE-M-GLPTV-KPK  316 (389)
T ss_dssp             TTT---------------C------SCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCC-CCC
T ss_pred             hhc---------------c------CCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHH-c-CCeec-CCC
Confidence            000               0      01222223333222  234  6788888999999999999999 6 88775 455


Q ss_pred             eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeC-CcccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        397 MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLN-DLPNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       397 ~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~-~~~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                      .+.+++...+..  +.+           ..++.+.|. +.|+.+.....+. ...+++|+++. .  ++++|+++++.|+
T Consensus       317 ~~~~~~~~~~~~--~~~-----------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~-~--~~~~i~~~l~~l~  380 (389)
T 1gd9_A          317 GAFYIFPRIRDT--GLT-----------SKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA-T--AYEKLEEAMDRME  380 (389)
T ss_dssp             BTTEECCBCGGG--TCC-----------HHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC-S--CHHHHHHHHHHHH
T ss_pred             eeeEEEEeccCC--CCC-----------HHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec-C--CHHHHHHHHHHHH
Confidence            454443222210  000           245677787 6775443322111 11469999943 2  8999999999999


Q ss_pred             Hhhcc
Q psy12303        475 RLGHD  479 (480)
Q Consensus       475 ~~~~~  479 (480)
                      +++++
T Consensus       381 ~~~~~  385 (389)
T 1gd9_A          381 RVLKE  385 (389)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87754

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.95  E-value=4e-27  Score=233.71  Aligned_cols=312  Identities=12%  Similarity=0.069  Sum_probs=217.4

Q ss_pred             chhcChhhHHHHHHHHHHHHHHhCCC--C-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCch
Q psy12303        103 TYEIAPVFILMETVVLEKMRQIIGWQ--G-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHY  179 (480)
Q Consensus       103 ~~~~~~~~~~~e~~~~~~la~~~g~~--~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~  179 (480)
                      .|....+..++.+++.+++++++|.+  + .++++|+|||+|+..++.++..              ||+ .|+++..+|.
T Consensus        73 ~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~~--------------~gd-~vl~~~~~~~  137 (407)
T 3nra_A           73 AYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVA--------------RGD-KVAIVQPDYF  137 (407)
T ss_dssp             HSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTCC--------------TTC-EEEEEESCCT
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhCC--------------CCC-EEEEcCCccc
Confidence            34445566789999999999999984  2 6899999999999998876643              445 7888999999


Q ss_pred             hHHHHHHHcCCCCCCeEEeeC------CCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHH
Q psy12303        180 SVRSCAAVCGLGTDNCVEVPS------DKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADIC  250 (480)
Q Consensus       180 s~~~~~~~~g~~~~~v~~v~~------~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~  250 (480)
                      ++..+++..|.   +++.+|.      ++++.+|+++|++++++.      +++|++++++|++|.+.|   +++|.++|
T Consensus       138 ~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~i~~~~  208 (407)
T 3nra_A          138 ANRKLVEFFEG---EMVPVQLDYVSADETRAGLDLTGLEEAFKAG------ARVFLFSNPNNPAGVVYSAEEIGQIAALA  208 (407)
T ss_dssp             HHHHHHHHTTC---EEEEEEBCCCSSCCSSCCBCHHHHHHHHHTT------CCEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred             chHHHHHHcCC---EEEEeecccccccCcCCCcCHHHHHHHHhhC------CcEEEEcCCCCCCCcccCHHHHHHHHHHH
Confidence            99999999998   8889998      367889999999999864      789999999999999988   99999999


Q ss_pred             HHcCcEEEeeccccccccccccccC-cccC-CCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccc
Q psy12303        251 QKYNMWLHVDAAWGGGLLLSKKYRH-PRLT-GIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQD  327 (480)
Q Consensus       251 ~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~-~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  327 (480)
                      ++||+++|+|++|+.+.+....... ..+. ...+.++++.|++|+++ .+.++|+++. ++.+..........+...  
T Consensus       209 ~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~--  285 (407)
T 3nra_A          209 ARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG-SRAIIARMEKLQAIVSLR--  285 (407)
T ss_dssp             HHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEE-CHHHHHHHHHHHHHHTSS--
T ss_pred             HHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEc-CHHHHHHHHHHHhhhccC--
Confidence            9999999999999986653211110 0011 11245688889999998 4467888876 444443322111111000  


Q ss_pred             cccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEee
Q psy12303        328 KLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYL  405 (480)
Q Consensus       328 ~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~  405 (480)
                                         ...+..++....+  +.+.+++..++..++++++.+.|++ +++++++ .+..+.+++...
T Consensus       286 -------------------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~-~~~~~~~~~~~~  344 (407)
T 3nra_A          286 -------------------AAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRG-CEGVFAR-TPQAGSYLFPRL  344 (407)
T ss_dssp             -------------------SCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHT-STTCBCC-CCSBSSEECCBC
T ss_pred             -------------------CChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-CCCceec-cCCeeEEEEEeC
Confidence                               1122222222222  2355778888899999999999999 8898875 444444443222


Q ss_pred             cCccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeCC--cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        406 PTRVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPLND--LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       406 ~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~~--~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +..  +.+           ..++.+.|.++ |+. +.++...+  ..+++|+++.   +++++|++++++|++++++
T Consensus       345 ~~~--~~~-----------~~~~~~~l~~~~gi~-v~~g~~~~~~~~~~iRis~~---~~~~~i~~~~~~l~~~~~~  404 (407)
T 3nra_A          345 PKL--AVA-----------PAEFVKILRLQAGVV-VTPGTEFSPHTADSVRLNFS---QDHEAAVAAARRIVTLVER  404 (407)
T ss_dssp             CCB--SSC-----------HHHHHHHHHHHHCEE-CEEGGGTCTTCTTBEEEECC---SCHHHHHHHHHHHHHHHHH
T ss_pred             CCC--CCC-----------HHHHHHHHHHhCCEE-EeCchhhCCCCCCEEEEEeC---CCHHHHHHHHHHHHHHHHH
Confidence            221  000           23566777654 744 43322211  2579999943   3899999999999988764

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.95  E-value=1.1e-26  Score=229.13  Aligned_cols=321  Identities=11%  Similarity=0.073  Sum_probs=223.7

Q ss_pred             HHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccC
Q psy12303         89 AGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIK  166 (480)
Q Consensus        89 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~  166 (480)
                      +.+.+...+......|...++..++++++.+++.+.+|.  +++++++|+|||+|+..++.++..              |
T Consensus        59 v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~--------------~  124 (389)
T 1o4s_A           59 VVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLD--------------P  124 (389)
T ss_dssp             HHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCC--------------T
T ss_pred             HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhCC--------------C
Confidence            335555544433334544456788999999999888886  557899999999999999988743              4


Q ss_pred             CceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC--
Q psy12303        167 GQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP--  242 (480)
Q Consensus       167 g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~--  242 (480)
                      |+ .|+++..+|+++..++...|.   +++.+|.++  ++.+|+++|+++++++      +++|++++++|++|.+.|  
T Consensus       125 gd-~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~  194 (389)
T 1o4s_A          125 GD-EVIVFSPVWVSYIPQIILAGG---TVNVVETFMSKNFQPSLEEVEGLLVGK------TKAVLINSPNNPTGVVYRRE  194 (389)
T ss_dssp             TC-EEEEEESCCTTHHHHHHHTTC---EEEEEECCGGGTTCCCHHHHHHTCCTT------EEEEEEESSCTTTCCCCCHH
T ss_pred             CC-EEEEcCCCchhHHHHHHHcCC---EEEEEecCCccCCCCCHHHHHHhcccC------ceEEEEcCCCCCCCCCCCHH
Confidence            45 788888999999999999888   788899875  5789999999988754      889999999999999977  


Q ss_pred             -hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCc
Q psy12303        243 -IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSA  320 (480)
Q Consensus       243 -l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~  320 (480)
                       +++|.++|++||+++++|++|+.+....+......+.+..+.|+++.|+||+++.| .++|+++++ ++..........
T Consensus       195 ~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~-~~~~~~l~~~~~  273 (389)
T 1o4s_A          195 FLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISS-EKVATAVSKIQS  273 (389)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeC-HHHHHHHHHHhh
Confidence             99999999999999999999998765221100001222236799999999999733 458988874 444433221110


Q ss_pred             ccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEE
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNV  400 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v  400 (480)
                      .+.                     .....+..+++...+.. ++++..++..++++++.+.|++ . |++++ .|..+.+
T Consensus       274 ~~~---------------------~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~~~~~  328 (389)
T 1o4s_A          274 HTT---------------------SCINTVAQYAALKALEV-DNSYMVQTFKERKNFVVERLKK-M-GVKFV-EPEGAFY  328 (389)
T ss_dssp             HHT---------------------CSCCHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHHH-T-TCCCC-CCSBSSE
T ss_pred             hcc---------------------cCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHh-c-CCeee-cCCcceE
Confidence            000                     00123344444444432 2677788889999999999999 5 88775 4555555


Q ss_pred             EEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        401 SFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       401 ~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ++...+  ..              ..++.+.|. +.|+.+.....+.. .+++|+++.   +++++|+++++.|++++++
T Consensus       329 ~~~~~~--~~--------------~~~l~~~l~~~~gi~v~~g~~f~~-~~~~Ris~~---~~~~~l~~~l~~l~~~l~~  388 (389)
T 1o4s_A          329 LFFKVR--GD--------------DVKFCERLLEEKKVALVPGSAFLK-PGFVRLSFA---TSIERLTEALDRIEDFLNS  388 (389)
T ss_dssp             EEEECS--SC--------------HHHHHHHHHHHHCEECEEGGGGTC-TTEEEEECC---SCHHHHHHHHHHHHHHHTC
T ss_pred             EEEeCC--CC--------------HHHHHHHHHHHCCEEEeCchhcCC-CCeEEEEEe---CCHHHHHHHHHHHHHHHhc
Confidence            443222  11              235667776 67754433222222 469999943   3899999999999988754

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.95  E-value=1.8e-26  Score=230.14  Aligned_cols=330  Identities=13%  Similarity=0.085  Sum_probs=224.5

Q ss_pred             hHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhC--CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCC
Q psy12303         85 VVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIG--WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGL  162 (480)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~  162 (480)
                      ++.+. +.+...+......|...  ..++++++++++++.+|  .+++++++|+|+++|+..++++++.           
T Consensus        76 ~~~v~-~a~~~~~~~~~~~y~~~--~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~-----------  141 (421)
T 3l8a_A           76 VPEIK-EAIINYGREHIFGYNYF--NDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSE-----------  141 (421)
T ss_dssp             CHHHH-HHHHHHHHHCCSSCBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSC-----------
T ss_pred             CHHHH-HHHHHHHhcCCcCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcC-----------
Confidence            34444 44444443333344322  37888899999999999  4567899999999999999998754           


Q ss_pred             CccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCC-C--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccc
Q psy12303        163 SAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD-K--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGA  239 (480)
Q Consensus       163 ~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~-~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~  239 (480)
                         +|+ .|++....|+++..++...|.   +++.+|.+ .  ++.+|+++|++++++.     ++++|++++++|++|.
T Consensus       142 ---~gd-~Vi~~~~~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~~~le~~i~~~-----~~~~vil~~p~nptG~  209 (421)
T 3l8a_A          142 ---KGD-AVLINSPVYYPFARTIRLNDH---RLVENSLQIINGRFEIDFEQLEKDIIDN-----NVKIYLLCSPHNPGGR  209 (421)
T ss_dssp             ---TEE-EEEEEESCCHHHHHHHHHTTE---EEEEEECEEETTEEECCHHHHHHHHHHT-----TEEEEEEESSBTTTTB
T ss_pred             ---CCC-EEEECCCCcHHHHHHHHHCCC---EEEeccccccCCCeeeCHHHHHHHhhcc-----CCeEEEECCCCCCCCC
Confidence               334 788888999999999999887   78888875 2  3478999999999842     2899999999999999


Q ss_pred             c---cChHHHHHHHHHcCcEEEeeccccccccccccccC-c-ccCCCCCCccceeCccccCC-CcccceEEEEeCchhhH
Q psy12303        240 F---DPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH-P-RLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLI  313 (480)
Q Consensus       240 ~---~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~-~-~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~  313 (480)
                      +   +++++|.++|++||+++|+|++|+++......... . ......+.++++.+++|+++ .+.++|+++++++++..
T Consensus       210 ~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~  289 (421)
T 3l8a_A          210 VWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRR  289 (421)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHH
Confidence            8   67999999999999999999999986653221111 0 00111244577889999997 44678999987665554


Q ss_pred             hhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        314 SCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       314 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                      ........+..                 ..+..+...++..++.. +.+.++++.++..++++++.+.|++ .|+++++ 
T Consensus       290 ~~~~~~~~~~~-----------------~~~n~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~-~~~i~~~-  349 (421)
T 3l8a_A          290 KFQYRQLANNQ-----------------HEVPTVGMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEA-KTKIKVM-  349 (421)
T ss_dssp             HHHHHHHHTTC-----------------SCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHH-HCSCEEE-
T ss_pred             HHHHHHHhccc-----------------CCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHh-CCCceEe-
Confidence            33211100000                 00111122233333432 5667888899999999999999999 6899986 


Q ss_pred             CCceeEEE-EEeecCccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeCCc--ccEEEEecccCCCCHHHHHHH
Q psy12303        394 EPEMVNVS-FWYLPTRVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPLNDL--PNFFRNIISSAAVTEGDIDFL  469 (480)
Q Consensus       394 ~~~~~~v~-f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~~~--~~~~R~~~~~~~~t~~di~~~  469 (480)
                      .+..+.+. +.+......              ..++.+.|.++ | +.+.++...+.  .+++|++ +.  +++++|+++
T Consensus       350 ~~~~~~~~~v~~~~~~~~--------------~~~l~~~l~~~~g-i~v~~g~~f~~~~~~~iRi~-~~--~~~~~i~~~  411 (421)
T 3l8a_A          350 EPEGTYLVWLDFSAYAIA--------------QPQLSEKLQNEAK-VVLNDGAHFGKEGKYFARLN-VA--TPKNTVQEA  411 (421)
T ss_dssp             CCSBSSEEEEECGGGTCC--------------TTHHHHHHHHTTC-EECEEGGGGCGGGTTEEEEE-CC--SCHHHHHHH
T ss_pred             CCCeeEEEEEeccccCCC--------------HHHHHHHHHHhCC-EEEECchhhCCCCCCEEEEE-ec--CCHHHHHHH
Confidence            45555555 332211111              13566777654 6 44443222221  5799999 43  589999999


Q ss_pred             HHHHHHhhc
Q psy12303        470 LTEMDRLGH  478 (480)
Q Consensus       470 ~~~l~~~~~  478 (480)
                      +++|+++++
T Consensus       412 l~~l~~~l~  420 (421)
T 3l8a_A          412 LSRIISVFG  420 (421)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHh
Confidence            999998865

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.95  E-value=2.2e-27  Score=229.89  Aligned_cols=347  Identities=13%  Similarity=-0.024  Sum_probs=230.6

Q ss_pred             CccccccCCCChHHhHHHHHHHHcCc--CC-cc---hhcChhhHHHHHHHHHHHHHHhCCCC-CCeEE-CCChhHHHHHH
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIATANT--NM-FT---YEIAPVFILMETVVLEKMRQIIGWQG-GDSIL-APGGSISNLYA  145 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~~-~~---~~~~~~~~~~e~~~~~~la~~~g~~~-~~~~~-t~ggt~a~~~a  145 (480)
                      .-+|.+++.+.|+.++..+...+.+.  ++ ..   ...++.+.++.+++++.+++++|+++ .+++| |+|||+|+..+
T Consensus        14 ~~~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a   93 (377)
T 3e77_A           14 GTENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAV   93 (377)
T ss_dssp             -CCCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHH
T ss_pred             ccccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHH
Confidence            45777888888888886555444321  11 11   12345677788889999999999975 57888 68999999999


Q ss_pred             HHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCcc
Q psy12303        146 FLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIP  225 (480)
Q Consensus       146 l~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~  225 (480)
                      +......            .+|+ .+++....|++. +.++.+...+..++.++.+.++..++++++.+++++      +
T Consensus        94 ~~~l~~~------------~~Gd-~v~~~~~g~~~~-~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~------t  153 (377)
T 3e77_A           94 PLNLIGL------------KAGR-CADYVVTGAWSA-KAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPD------A  153 (377)
T ss_dssp             HHHHGGG------------STTC-EEEECCCSHHHH-HHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCCTT------C
T ss_pred             HHhccCC------------CCCC-eEEEEECCHHHH-HHHHHHHHhCCceEEeccCCCcCCCCChHHhccCCC------c
Confidence            8876531            0245 555555667664 334444221225666788767677777776666554      8


Q ss_pred             EEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEE
Q psy12303        226 FFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIH  305 (480)
Q Consensus       226 ~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~  305 (480)
                      ++|.+++.+|.+|.+.|+     +|+++|+++|||++++.+..+++..++       +  ++++++|||++ |.|+|+++
T Consensus       154 ~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~-------~--~~~~s~~K~~g-p~G~g~l~  218 (377)
T 3e77_A          154 SYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKF-------G--VIFAGAQKNVG-SAGVTVVI  218 (377)
T ss_dssp             SCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGC-------S--EEEEEGGGTTS-CTTCEEEE
T ss_pred             cEEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCCCCchhhc-------C--EEEEecccccC-CCccEEEE
Confidence            899999999999999998     478899999999999999998887655       3  58899999995 99999999


Q ss_pred             EeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC-CCchHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHh
Q psy12303        306 FKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-NDIFKLWLQWRAKGDE-GFEKQIDRLMELAEYMVKKIK  383 (480)
Q Consensus       306 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~~l~~~g~~-~~~~~~~~~~~l~~~l~~~l~  383 (480)
                      ++++.+ .......+.|+......     +.+  ....+-+ ....++..+++.+-.+ |++++.++..++++++.+.|+
T Consensus       219 ~~~~~l-~~~~~~~p~~~~~~~~~-----~~~--~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~  290 (377)
T 3e77_A          219 VRDDLL-GFALRECPSVLEYKVQA-----GNS--SLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIID  290 (377)
T ss_dssp             EETTSC-SCCCTTSCGGGCHHHHH-----TTT--TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EcHHHH-hhccCCCCchhhHHHHh-----hcC--CCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence            987642 22222222232100000     000  0001111 1344555666666566 899999999999999999999


Q ss_pred             cCCCCeEEec-CC--cee-EEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccC
Q psy12303        384 SMPDKFYLIL-EP--EMV-NVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSA  459 (480)
Q Consensus       384 ~~~~g~~~~~-~~--~~~-~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~  459 (480)
                      + ++|+.+.. ++  .+. +++|.+....  ..  .+    +   ...+...+.+.|+. +.. .... .+.+|+| ++.
T Consensus       291 ~-~~g~~~~~~~~~~rs~~ivsf~~~~~~--~~--~~----~---~~~~l~~l~~~Gi~-~~~-g~~~-~g~iRiS-~~~  354 (377)
T 3e77_A          291 N-SQGFYVCPVEPQNRSKMNIPFRIGNAK--GD--DA----L---EKRFLDKALELNML-SLK-GHRS-VGGIRAS-LYN  354 (377)
T ss_dssp             T-STTSEECCSCGGGBCSSEEEEEESSTT--CC--HH----H---HHHHHHHHHHTTEE-SCB-CCTT-TCSEEEE-CCT
T ss_pred             h-cCCceecCCCHHHcCCcEEEEEcCCCC--Cc--hh----H---HHHHHHHHHHCCcE-EeC-CCCc-CCEEEEE-CCC
Confidence            9 88998642 22  233 4777643211  00  00    1   12355666677743 222 2222 3579999 788


Q ss_pred             CCCHHHHHHHHHHHHHhhcc
Q psy12303        460 AVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       460 ~~t~~di~~~~~~l~~~~~~  479 (480)
                      ++|++||+++++.|+++.++
T Consensus       355 ~~t~edId~l~~al~~~~~~  374 (377)
T 3e77_A          355 AVTIEDVQKLAAFMKKFLEM  374 (377)
T ss_dssp             TSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999998753

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.95  E-value=6.4e-27  Score=229.99  Aligned_cols=321  Identities=12%  Similarity=0.059  Sum_probs=213.6

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH--HH
Q psy12303        107 APVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR--SC  184 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~--~~  184 (480)
                      ++.+.++.+++++.+++++|.+ ..++||+|||+|+..++..+ .              ||+ .|+++...|++..  ..
T Consensus        30 ~~~~~~~~~~~~~~l~~~~~~~-~~v~~~~sgt~a~~~~~~~~-~--------------~gd-~vi~~~~~~~~~~~~~~   92 (379)
T 3ke3_A           30 SKAFQEVMNDLLSNLKTVYNAE-AAVIIPGSGTYGMEAVARQL-T--------------IDE-DCLIIRNGWFSYRWTQI   92 (379)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHHH-C--------------TTC-EEEEEECSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCC-CEEEEcCChhHHHHHHHHhC-C--------------CCC-eEEEEeCCchhHHHHHH
Confidence            5666788888999999999997 57889999999999877433 1              445 6666667776643  34


Q ss_pred             HHHcCCCCCCeEEeeCCCC---------CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHH
Q psy12303        185 AAVCGLGTDNCVEVPSDKR---------GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQK  252 (480)
Q Consensus       185 ~~~~g~~~~~v~~v~~~~~---------~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~  252 (480)
                      +...|.+. +++.++.+..         +.+|+++|++++++.     ++++|++++++|++|.+.|   +++|.++|++
T Consensus        93 ~~~~g~~~-~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~  166 (379)
T 3ke3_A           93 LEKGKFAK-SSTVLTAERTEDTEAPKPFAPVDIETAVAKIKED-----KSAIVYAPHVETSSGIILSEEYIKALSEAVHS  166 (379)
T ss_dssp             HHHHCCSS-EEEEEECEESSCCSSCCCEECCCHHHHHHHHHHH-----TCSEEEEESEETTTTEECCHHHHHHHHHHHHH
T ss_pred             HHHhCCCC-ceEEEeccccccccccCCCCCCCHHHHHHHHhhc-----CCcEEEEEeecCCCceeCCHHHHHHHHHHHHH
Confidence            45556532 5677776431         268999999999653     1788999999999999999   9999999999


Q ss_pred             cCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhc-CCccccccccccc-
Q psy12303        253 YNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQ-MSAEYLFMQDKLY-  330 (480)
Q Consensus       253 ~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-  330 (480)
                      ||+++|+|++++ +..+.+...+       ++|++++++||++++|.|+|++++++. ..+.... ...++........ 
T Consensus       167 ~~~~li~D~~~~-g~~~~~~~~~-------~~d~~~~s~~K~l~~~~g~g~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~  237 (379)
T 3ke3_A          167 VGGLLVIDCIAS-GCVWLDMKEL-------GIDVLISAPQKGWSSTPCAGLVMLSAA-AIKKVESTESNCFSLDLKQWLT  237 (379)
T ss_dssp             TTCEEEEECTTC-TTCCCCHHHH-------TCSEEEECTTTTTCSCCCEEEEEECHH-HHHHHHTCCCSCSTTCHHHHHH
T ss_pred             cCCEEEEEeccc-CCcccccccc-------CCCEEEecchhhcCCCCceEEEEECHH-HHHhhhcCCCCceeecHHHHHH
Confidence            999999999998 6555544444       789999999999999999999987654 4343332 1222221100000 


Q ss_pred             -CcccCCCCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc--eeEEEEEeec
Q psy12303        331 -DVRYDTGDKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE--MVNVSFWYLP  406 (480)
Q Consensus       331 -~~~~~~~~~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~--~~~v~f~~~~  406 (480)
                       ...+..+...+..+... ...++..++..+..++++++.++..++++++++.|++ + |++++.++.  ...+.....+
T Consensus       238 ~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~-~-g~~~~~~~~~~~~~i~~~~~~  315 (379)
T 3ke3_A          238 IMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTD-K-GIESVAAEGFEAPGVVVSYTE  315 (379)
T ss_dssp             HHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSBCTTCBCSSEEEEECS
T ss_pred             HHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-c-CCEecCCccccCceEEEEccC
Confidence             00000111111111111 2233445566655667889999999999999999999 4 888765442  3333322211


Q ss_pred             CccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeee-----CCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        407 TRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPL-----NDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       407 ~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~-----~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                       ..      +         ....+.|.+.|+.+ ..+..     ....+.+|++ ++.++|++||++++++|++++++
T Consensus       316 -~~------~---------~~~~~~L~~~Gi~v-~~g~~~~~~~~~~~~~lRis-~~~~~t~~di~~~~~~l~~~l~~  375 (379)
T 3ke3_A          316 -RD------D---------MHKGSAFAEAGLQI-AAGVPLKVGEPDNFKTFRLG-LFGLDKLTDIDGTVERFEKALDE  375 (379)
T ss_dssp             -CH------H---------HHSSHHHHHTTCCC-EECCCCSSCCCTTCCEEEEE-CCSHHHHTCHHHHHHHHHHHHHH
T ss_pred             -Cc------c---------hHHHHHHHHCCeEE-eCCccccccccCcCCEEEEe-CCcCCCHHHHHHHHHHHHHHHHH
Confidence             10      0         01135566777543 33211     0114799999 77788999999999999988764

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.95  E-value=1.5e-25  Score=218.90  Aligned_cols=289  Identities=11%  Similarity=0.043  Sum_probs=210.4

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++++++++|.+++++++|+|||+|+..++.++..              ||+ .|+++..+|+++...+...|.   +
T Consensus        70 ~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~~--------------~gd-~vl~~~~~~~~~~~~~~~~g~---~  131 (363)
T 3ffh_A           70 SSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLLD--------------TTT-NTVMATPTFVQYRQNALIEGA---E  131 (363)
T ss_dssp             HHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCS--------------TTC-EEEEEESSCHHHHHHHHHHTC---E
T ss_pred             HHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHcc--------------CCC-EEEEcCCChHHHHHHHHHcCC---E
Confidence            4567789999999878999999999999999987743              445 788888999999999999998   8


Q ss_pred             eEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHc--CcEEEeecccccccccccc
Q psy12303        195 CVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY--NMWLHVDAAWGGGLLLSKK  272 (480)
Q Consensus       195 v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~--~~~l~vD~a~~~~~~~~~~  272 (480)
                      ++.+|.++++.+|+++|+++++++      +++|++++++|++|.+.|++++.++++.+  |+++|+|++|+.+.. ...
T Consensus       132 ~~~v~~~~~~~~d~~~l~~~i~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~-~~~  204 (363)
T 3ffh_A          132 VREIPLLQDGEHDLEGMLNAIDEK------TTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVT-PQP  204 (363)
T ss_dssp             EEEEECCTTSCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCS-SCC
T ss_pred             EEEecCCCCCCcCHHHHHHhcccC------CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcC-ccc
Confidence            899999888999999999999754      89999999999999999999999999988  999999999997654 111


Q ss_pred             ccCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchH
Q psy12303        273 YRHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFK  351 (480)
Q Consensus       273 ~~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~  351 (480)
                      ...-......+.++++.+++|+++ .+.++|++++ +++...........|-                       ...+.
T Consensus       205 ~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~-----------------------~~~~~  260 (363)
T 3ffh_A          205 EKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIA-DKEIIRQLNIVRPPFN-----------------------TTSIG  260 (363)
T ss_dssp             CCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEE-CHHHHHHHHHTCCSCC-----------------------CBHHH
T ss_pred             cCHHHHhhcCCCEEEEeechhhhcCchhceeeeec-CHHHHHHHHHhCCCCC-----------------------CCHHH
Confidence            000011111234466788999997 4456699887 5555544332221110                       12333


Q ss_pred             HHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHH
Q psy12303        352 LWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKG  430 (480)
Q Consensus       352 ~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~  430 (480)
                      .+++...+ ..+.+++..++..++++++.+.|++ +++++++ ++....+.+.+ +..                ..++.+
T Consensus       261 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~-~~~~~~~~~~~-~~~----------------~~~~~~  321 (363)
T 3ffh_A          261 QKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKR-FEKVKLY-PANGNFVLIDL-GIE----------------AGTIFS  321 (363)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEC-CCCSSEEEEEC-SSC----------------HHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhh-CCCceEC-CCCCeEEEEEC-CCC----------------HHHHHH
Confidence            33333333 2366788889999999999999999 8899985 45554444432 111                245678


Q ss_pred             HHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        431 RMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       431 ~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      .|.++|+. +.++...+..+++|++ ++   +++|+++++++|+++
T Consensus       322 ~l~~~gi~-v~~g~~~~~~~~iRis-~~---~~~~i~~~~~~l~~~  362 (363)
T 3ffh_A          322 YLEKNGYI-TRSGAALGFPTAVRIT-IG---KEEDNSAVIALLEKL  362 (363)
T ss_dssp             HHHHTTEE-CEETTTTTCTTEEEEE-CC---CHHHHHHHHHHHHHH
T ss_pred             HHHHCCeE-EEeCccCCCCCeEEEE-CC---CHHHHHHHHHHHHHh
Confidence            88888844 4433322335799999 43   899999999999876

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.95  E-value=4e-26  Score=225.20  Aligned_cols=327  Identities=11%  Similarity=0.088  Sum_probs=222.7

Q ss_pred             hHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhC--CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCC
Q psy12303         85 VVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIG--WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGL  162 (480)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~  162 (480)
                      ++.+. +.+...+......|..  ...++++++++++++++|  .++.++++|+|||+|+..++.++..           
T Consensus        47 ~~~v~-~a~~~~~~~~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~-----------  112 (391)
T 4dq6_A           47 APCII-DSLKNRLEQEIYGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTK-----------  112 (391)
T ss_dssp             CHHHH-HHHHHHHTTCCCCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSC-----------
T ss_pred             CHHHH-HHHHHHHhCCCCCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCC-----------
Confidence            34444 5555555443344432  347888999999999999  5667899999999999999988753           


Q ss_pred             CccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCC--C--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccc
Q psy12303        163 SAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD--K--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG  238 (480)
Q Consensus       163 ~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~--~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G  238 (480)
                         ||+ .|+++..+|.++..++...|.   +++.+|.+  .  ++.+|+++|++++++       +++|++++++|++|
T Consensus       113 ---~gd-~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~d~~~l~~~l~~-------~~~v~i~~p~nptG  178 (391)
T 4dq6_A          113 ---AND-KIMIQEPVYSPFNSVVKNNNR---ELIISPLQKLENGNYIMDYEDIENKIKD-------VKLFILCNPHNPVG  178 (391)
T ss_dssp             ---TTC-EEEECSSCCTHHHHHHHHTTC---EEEECCCEECTTSCEECCHHHHHHHCTT-------EEEEEEESSBTTTT
T ss_pred             ---CCC-EEEEcCCCCHHHHHHHHHcCC---eEEeeeeeecCCCceEeeHHHHHHHhhc-------CCEEEEECCCCCCC
Confidence               445 788999999999999999988   88889887  3  346899999998864       78999999999999


Q ss_pred             cc---cChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCC----CCCccceeCccccCC-CcccceEEEEeCch
Q psy12303        239 AF---DPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGI----ERADSVTWNPHKLMG-TLLQCSTIHFKQDG  310 (480)
Q Consensus       239 ~~---~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~----~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~  310 (480)
                      .+   +++++|.++|++||+++|+|++|+.+........  .+..+    ....+++.|+||+++ .+.++|+++++++.
T Consensus       179 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~--~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~  256 (391)
T 4dq6_A          179 RVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHI--PMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEK  256 (391)
T ss_dssp             BCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCC--CGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHH
T ss_pred             cCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCcc--CHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHH
Confidence            99   6689999999999999999999988654321110  11111    022367889999997 44678998877655


Q ss_pred             hhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeE
Q psy12303        311 LLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFY  390 (480)
Q Consensus       311 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~  390 (480)
                      +..........+...                 ........++..++.. +.+.+++..++..++++++.+.|++++|+++
T Consensus       257 ~~~~~~~~~~~~~~~-----------------~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  318 (391)
T 4dq6_A          257 DYKLLDDAFTRIDIK-----------------RNNCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLK  318 (391)
T ss_dssp             HHHHHHHHHHHTTCC-----------------CCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSE
T ss_pred             HHHHHHHHHHhhcCC-----------------CCCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCE
Confidence            444332111000000                 0000112222333332 4556788889999999999999986247998


Q ss_pred             EecCCceeEEEEEeecC-ccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeCC-cccEEEEecccCCCCHHHHH
Q psy12303        391 LILEPEMVNVSFWYLPT-RVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPLND-LPNFFRNIISSAAVTEGDID  467 (480)
Q Consensus       391 ~~~~~~~~~v~f~~~~~-~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~  467 (480)
                      ++ .+..+.+.+...+. ...              ..++.++|.++ |+.+.....+.. ..+++|+++ .  +++++|+
T Consensus       319 ~~-~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~-~--~~~~~i~  380 (391)
T 4dq6_A          319 VR-KPEGTYLLWVDFSALGLS--------------DEELESILVQKGKVALNQGNSFGIGGSGYQRINL-A--CPRSMLE  380 (391)
T ss_dssp             EC-CCSBSSEEEEECGGGCCC--------------HHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEEC-C--SCHHHHH
T ss_pred             ec-CCCccEEEEEEhhhcCCC--------------HHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEE-c--CCHHHHH
Confidence            85 45555555322221 111              24677888888 744433222211 147999994 3  6899999


Q ss_pred             HHHHHHHHhh
Q psy12303        468 FLLTEMDRLG  477 (480)
Q Consensus       468 ~~~~~l~~~~  477 (480)
                      +++++|++++
T Consensus       381 ~~l~~l~~~l  390 (391)
T 4dq6_A          381 EALIRIKNAI  390 (391)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.95  E-value=1.7e-26  Score=229.32  Aligned_cols=319  Identities=12%  Similarity=0.098  Sum_probs=222.9

Q ss_pred             HHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCc
Q psy12303         91 EWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQ  168 (480)
Q Consensus        91 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~  168 (480)
                      +.+ ..+......|...++..++++.+.+++.+.+|.  ++.++++|+|||+|+..++.++..              ||+
T Consensus        63 ~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~--------------~gd  127 (409)
T 2gb3_A           63 ERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIAN--------------PGD  127 (409)
T ss_dssp             HHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCC--------------TTC
T ss_pred             HHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhCC--------------CCC
Confidence            555 555443344554556788999989998887774  457899999999999999988743              445


Q ss_pred             eEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc---Ch
Q psy12303        169 LVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD---PI  243 (480)
Q Consensus       169 ~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~---~l  243 (480)
                       .|+++..+|+++..++...|.   +++.+|.++  ++.+ +++|+++++++      +++|++++++|++|.+.   ++
T Consensus       128 -~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~-~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l  196 (409)
T 2gb3_A          128 -EILVLEPFYANYNAFAKIAGV---KLIPVTRRMEEGFAI-PQNLESFINER------TKGIVLSNPCNPTGVVYGKDEM  196 (409)
T ss_dssp             -EEEEEESCCTHHHHHHHHHTC---EEEEEECCGGGTSCC-CTTGGGGCCTT------EEEEEEESSCTTTCCCCCHHHH
T ss_pred             -EEEEcCCCchhHHHHHHHcCC---EEEEeccCCCCCCcc-HHHHHHhhCcC------CeEEEECCCCCCCCCCcCHHHH
Confidence             788888999999999999988   788999875  4455 88898888653      89999999999999985   48


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCccc
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEY  322 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~  322 (480)
                      ++|.++|++||+++|+|++|+.+...... .. .+.+..+.|+++.|+||+++.| ..+|+++++++++..........+
T Consensus       197 ~~i~~~~~~~~~~li~Dea~~~~~~~~~~-~~-~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~~~~  274 (409)
T 2gb3_A          197 RYLVEIAERHGLFLIVDEVYSEIVFRGEF-AS-ALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGR  274 (409)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTCBCSSCC-CC-GGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCEEEEECcccccccCCCC-CC-ccccCCCCEEEEecchhccCCccceEEEEEECcHHHHHHHHHHHhcc
Confidence            99999999999999999999987643211 11 2233346799999999999743 458999877634444322111000


Q ss_pred             ccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEE
Q psy12303        323 LFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNV  400 (480)
Q Consensus       323 l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v  400 (480)
                      .                      ....+..+++...+  +.+.++++.++..++++++.+.|++ . +++++..|..+.+
T Consensus       275 ~----------------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~  330 (409)
T 2gb3_A          275 L----------------------APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEE-H-GLKRFTKPSGAFY  330 (409)
T ss_dssp             C----------------------CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCBCCCSBSSE
T ss_pred             C----------------------CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-c-CceeeeCCCeeEE
Confidence            0                      01222333333333  5677888889999999999999999 5 8877234555555


Q ss_pred             EEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhc------ccEEEeeeeeC----CcccEEEEecccCCCCHHHHHHHH
Q psy12303        401 SFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQA------GTMMVGYQPLN----DLPNFFRNIISSAAVTEGDIDFLL  470 (480)
Q Consensus       401 ~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~------g~~~~~~~~~~----~~~~~~R~~~~~~~~t~~di~~~~  470 (480)
                      ++...+ .   .+           ..++.+.|.++      |+.+.....+.    ...+++|++ +.  +++++|++++
T Consensus       331 ~~~~~~-~---~~-----------~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis-~~--~~~e~i~~~~  392 (409)
T 2gb3_A          331 ITAELP-V---ED-----------AEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIA-CV--LEKDLLSRAI  392 (409)
T ss_dssp             EEEECS-S---SC-----------HHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEE-CC--SCHHHHHHHH
T ss_pred             EEEEeC-C---CC-----------HHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEE-eC--CCHHHHHHHH
Confidence            553332 1   11           23566777776      74443322221    115799999 44  7999999999


Q ss_pred             HHHHHhhcc
Q psy12303        471 TEMDRLGHD  479 (480)
Q Consensus       471 ~~l~~~~~~  479 (480)
                      ++|++++++
T Consensus       393 ~~l~~~l~~  401 (409)
T 2gb3_A          393 DVLMEGLKM  401 (409)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987653

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.95  E-value=2.6e-26  Score=227.85  Aligned_cols=323  Identities=11%  Similarity=0.054  Sum_probs=220.3

Q ss_pred             HHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCc
Q psy12303         91 EWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQ  168 (480)
Q Consensus        91 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~  168 (480)
                      +.+...+......|...++..++++.+.+++.+.+|.  ++.++++|+|||+|+..++.++..              ||+
T Consensus        61 ~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~--------------~gd  126 (406)
T 1xi9_A           61 EAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLD--------------PGD  126 (406)
T ss_dssp             HHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCC--------------TTC
T ss_pred             HHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCC--------------CCC
Confidence            4444333322234544455678999999999888775  457899999999999999988743              445


Q ss_pred             eEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---h
Q psy12303        169 LVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---I  243 (480)
Q Consensus       169 ~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l  243 (480)
                       .|+++..+|+++..++...|.   +++.+|.++  ++.+|+++|+++++++      +++|++++++|++|.+.|   +
T Consensus       127 -~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~~~~l  196 (406)
T 1xi9_A          127 -EILVPGPSYPPYTGLVKFYGG---KPVEYRTIEEEDWQPDIDDIRKKITDR------TKAIAVINPNNPTGALYDKKTL  196 (406)
T ss_dssp             -EEEEEESCCHHHHHHHHHTTC---EEEEEEEEGGGTSEECHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHH
T ss_pred             -EEEEcCCCCccHHHHHHHcCC---EEEEeecCCCcCCcCCHHHHHHhhCcC------ceEEEEECCCCCCCCCcCHHHH
Confidence             788889999999999999888   788888874  4678999999998754      889999999999999866   9


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCC-ccceeCccccCCCc-ccceEEEE-eCc----hhhHhhh
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERA-DSVTWNPHKLMGTL-LQCSTIHF-KQD----GLLISCN  316 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~-D~~~~s~hK~~~~p-~~~g~~~~-~~~----~~~~~~~  316 (480)
                      ++|.++|++||+++|+|++|+.+....+......+.  .+. |+++.|+||+++.| ..+|++++ .++    ++.....
T Consensus       197 ~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~  274 (406)
T 1xi9_A          197 EEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLT--KDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAID  274 (406)
T ss_dssp             HHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHC--SSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcC--CCceEEEEeccccccCCCccEEEEEEEecCchhHHHHHHHHH
Confidence            999999999999999999999876511110000111  255 78888999999743 45888883 333    4443322


Q ss_pred             cCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC
Q psy12303        317 QMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE  394 (480)
Q Consensus       317 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~  394 (480)
                      ... .+...                     ...+..++....+  +.++++++.++..++++++.+.|++ .|+++++ .
T Consensus       275 ~~~-~~~~~---------------------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~-~  330 (406)
T 1xi9_A          275 RLA-RIRLC---------------------PNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNE-IPGISTT-K  330 (406)
T ss_dssp             HHH-HHTCC---------------------SCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHT-STTEECC-C
T ss_pred             HHH-HhhcC---------------------CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh-CCCCeee-c
Confidence            110 00000                     1122222222222  3455788889999999999999999 8899875 4


Q ss_pred             CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCCc--ccEEEEecccCCCCHHHHHHHHH
Q psy12303        395 PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLNDL--PNFFRNIISSAAVTEGDIDFLLT  471 (480)
Q Consensus       395 ~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~~--~~~~R~~~~~~~~t~~di~~~~~  471 (480)
                      |..+.++|...+... +.+           ..++.+.|. +.|+.+ .++...+.  .+++|++ +.  +++++|+++++
T Consensus       331 ~~~~~~~~~~~~~~~-~~~-----------~~~l~~~l~~~~gi~v-~~g~~f~~~~~~~lRis-~~--~~~~~i~~~~~  394 (406)
T 1xi9_A          331 PQGAFYIFPKIEVGP-WKN-----------DKEFVLDVLHNAHVLF-VHGSGFGEYGAGHFRAV-FL--PPIEILEEAMD  394 (406)
T ss_dssp             CCBSSEECCEECSCS-CSS-----------HHHHHHHHHHHHCEEC-EEGGGGCGGGTTBEEEE-CC--SCHHHHHHHHH
T ss_pred             CCeeEEEEEecCccC-CCC-----------HHHHHHHHHHhCCEEE-eCchhcCCCCCCEEEEE-ec--CCHHHHHHHHH
Confidence            555555542222210 110           235667776 677444 33222221  4699999 44  79999999999


Q ss_pred             HHHHhhcc
Q psy12303        472 EMDRLGHD  479 (480)
Q Consensus       472 ~l~~~~~~  479 (480)
                      +|++++++
T Consensus       395 ~l~~~l~~  402 (406)
T 1xi9_A          395 RFEKFMKE  402 (406)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.95  E-value=1.6e-25  Score=224.70  Aligned_cols=317  Identities=13%  Similarity=0.155  Sum_probs=216.1

Q ss_pred             chhcChhhHHHHHHHHHHHHHHhCC-CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhH
Q psy12303        103 TYEIAPVFILMETVVLEKMRQIIGW-QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV  181 (480)
Q Consensus       103 ~~~~~~~~~~~e~~~~~~la~~~g~-~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~  181 (480)
                      .|....+..++++.+.+++.+.+|. ++.++++|+|+|+|+..++.++.+              ||+ .|++..++|+++
T Consensus       113 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~--------------~Gd-~Vlv~~p~y~~~  177 (448)
T 3aow_A          113 QYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLN--------------PGD-IVVVEAPTYLAA  177 (448)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCC--------------TTC-EEEEEESCCHHH
T ss_pred             CCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcC--------------CCC-EEEEeCCChHHH
Confidence            4444455678888888888777798 667899999999999999988754              445 788888999999


Q ss_pred             HHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEE-EeccCCCccccccC---hHHHHHHHHHcCcEE
Q psy12303        182 RSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFV-NCTSGTTVLGAFDP---IEEIADICQKYNMWL  257 (480)
Q Consensus       182 ~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v-~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l  257 (480)
                      ..++...|.   +++.+|.++++ +|+++|+++++....++.++++| ++++++||+|.+.+   +++|.++|++||+++
T Consensus       178 ~~~~~~~g~---~~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~l  253 (448)
T 3aow_A          178 LQAFNFYEP---QYIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIV  253 (448)
T ss_dssp             HHHHHTTCC---EEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEE
T ss_pred             HHHHHHcCC---EEEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEE
Confidence            999998887   78889987765 99999999997322222348887 67899999999976   578999999999999


Q ss_pred             EeeccccccccccccccCcccCC--CCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccC
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLTG--IERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYD  335 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~~--~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  335 (480)
                      ++|++|+.+.+......  .+..  ..+.++.+.+++|+++.+..+|+++++ +.+..........+..           
T Consensus       254 I~De~y~~~~~~g~~~~--~~~~~~~~~~vi~~~S~SK~~~~GlriG~v~~~-~~l~~~l~~~~~~~~~-----------  319 (448)
T 3aow_A          254 VEDDPYGELRYSGNPEK--KIKALDNEGRVIYLGTFSKILAPGFRIGWMVGD-PGIIRKMEIAKQSTDL-----------  319 (448)
T ss_dssp             EEECSCTTCBCSSCCCC--CTGGGCTTSCEEEEEESTTTTCGGGCCEEEEEC-HHHHHHHHHHHHHHHS-----------
T ss_pred             EEECCCccccCCCCCCc--CHHhcCCCCCEEEEccchhhccccccEEEEEeC-HHHHHHHHHHHHHhcC-----------
Confidence            99999998765221110  1111  124567788999999844568999875 4444433211111000           


Q ss_pred             CCCccccCCCCCCchHHHHHHHHh--c--HHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEecCCceeEEEEEeecCccC
Q psy12303        336 TGDKVIQCGRHNDIFKLWLQWRAK--G--DEGFEKQIDRLMELAEYMVKKIKSMPD-KFYLILEPEMVNVSFWYLPTRVR  410 (480)
Q Consensus       336 ~~~~~~~~~r~~~~l~~~~~l~~~--g--~~~~~~~~~~~~~l~~~l~~~l~~~~~-g~~~~~~~~~~~v~f~~~~~~~~  410 (480)
                             +   ...+..+++...+  +  .+.++++.++..++++++.+.|+++.| ++++. .|..+++++...+....
T Consensus       320 -------~---~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~-~p~~g~~~~v~~~~~~~  388 (448)
T 3aow_A          320 -------C---TNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWT-KPEGGMFIWVTLPDGID  388 (448)
T ss_dssp             -------S---CCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEC-CCSBSSEEEEECSTTCC
T ss_pred             -------C---CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe-CCCccEEEEEEcCCCCC
Confidence                   0   1122222222222  2  345677777888899999999986246 68875 45555555433332211


Q ss_pred             CCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC---CcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        411 NMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN---DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       411 ~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~---~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                                    ..++.++|.++|+.+.....+.   ...+++|+++. . .++++|++++++|.+++++
T Consensus       389 --------------~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~-~-~~~e~i~~~~~~L~~~l~~  444 (448)
T 3aow_A          389 --------------SKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFT-Y-VDEDKIMEGIKRLAETIKE  444 (448)
T ss_dssp             --------------HHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECS-S-SCTHHHHHHHHHHHHHHHH
T ss_pred             --------------HHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeC-C-CCHHHHHHHHHHHHHHHHH
Confidence                          2456788888885544432221   11579999944 3 3899999999999987653

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.95  E-value=3.8e-26  Score=226.01  Aligned_cols=303  Identities=16%  Similarity=0.139  Sum_probs=213.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      .....++++++++++|.+.  .+++++||+|+..++.++.+              ||+ .|+++..+|+++..+++..|.
T Consensus        87 ~~~~~~l~~~la~~~~~~~--~i~~~sGt~a~~~~l~~~~~--------------~gd-~v~~~~~~~~~~~~~~~~~g~  149 (399)
T 3tqx_A           87 QTIHKELEKDISEFLGTDD--TILYSSCFDANGGLFETLLG--------------PED-AIISDELNHASIIDGIRLCKA  149 (399)
T ss_dssp             BHHHHHHHHHHHHHHTCSE--EEEESCHHHHHHTTHHHHCC--------------TTC-EEEEETTCCHHHHHHHHSCCS
T ss_pred             chHHHHHHHHHHHHHCCCc--EEEECchHHHHHHHHHHhcC--------------CCC-EEEECCcccHHHHHHHHHcCC
Confidence            4556678888999999874  66666779999988877643              445 889999999999999999887


Q ss_pred             CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccc
Q psy12303        191 GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLS  270 (480)
Q Consensus       191 ~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~  270 (480)
                         +++.+|.     +|+++|++++++...++.++++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+....
T Consensus       150 ---~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~  221 (399)
T 3tqx_A          150 ---QRYRYKN-----NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGE  221 (399)
T ss_dssp             ---EEEEECT-----TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSST
T ss_pred             ---ceeEeCC-----CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCC
Confidence               7788876     47889999998876555569999999999999999999999999999999999999997544321


Q ss_pred             ccccCcccCC-CCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCc
Q psy12303        271 KKYRHPRLTG-IERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI  349 (480)
Q Consensus       271 ~~~~~~~~~~-~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~  349 (480)
                      .........+ ....|+++.++||+++++.+ |+++. +++...........|....                   ....
T Consensus       222 ~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~-~~~~~~~~~~~~~~~~~~~-------------------~~~~  280 (399)
T 3tqx_A          222 NGRGTPEYCGVADRVDILTGTLGKALGGASG-GYTSG-HKEIIEWLRNRSRPYLFSN-------------------TVAP  280 (399)
T ss_dssp             TSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEEE-CHHHHHHHHHHCHHHHSSC-------------------CCCH
T ss_pred             CCCchHHhhCCCCCCcEEEecchHhcccCce-EEEEc-CHHHHHHHHHhCcceeccC-------------------CCcH
Confidence            1100001112 23679999999999995444 77665 4555544332222221110                   0122


Q ss_pred             h---HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhH
Q psy12303        350 F---KLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITP  426 (480)
Q Consensus       350 l---~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~  426 (480)
                      +   ++..+++.+. ++.+++.++..++++++.+.|++ . |+++. ++..+.+.+.+. ..            .  ...
T Consensus       281 ~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~~~~~~~~~~-~~------------~--~~~  341 (399)
T 3tqx_A          281 VIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEK-L-GFQLV-PGNHPIIPVMLG-DA------------Q--LAT  341 (399)
T ss_dssp             HHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHH-H-TCCBC-CCSSSEEEEEEE-CH------------H--HHH
T ss_pred             HHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHH-c-CCCcC-CCCCCEEEEEeC-CH------------H--HHH
Confidence            2   3333333322 55788889999999999999999 4 88775 566666655432 11            0  024


Q ss_pred             HHHHHHHhcccEEEeeeeeC---CcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        427 ILKGRMMQAGTMMVGYQPLN---DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       427 ~i~~~l~~~g~~~~~~~~~~---~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      ++.+.|.++|+.+ .+....   ...+++|++ ++..++++|+++++++|+++++++
T Consensus       342 ~~~~~l~~~gi~v-~~~~~~~~~~~~~~iRi~-~~~~~~~~~i~~~~~~l~~~~~~~  396 (399)
T 3tqx_A          342 NMADHLLQEGIYV-VGFSYPVVPMGKARIRVQ-MSAVHTQQQLDRAIEAFGQVGKKL  396 (399)
T ss_dssp             HHHHHHHHTTEEC-CEECTTTSCTTCEEEEEE-CCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCEE-eeeCCCCCCCCCceEEEE-eecCCCHHHHHHHHHHHHHHHHHh
Confidence            6778888888544 333221   114799999 777899999999999999987653

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.95  E-value=9.5e-26  Score=221.26  Aligned_cols=312  Identities=10%  Similarity=0.029  Sum_probs=207.7

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      ..++++.+++++|.+  ++++|+|||+|+..++.+++..           ..||+ .|+++..+|+++..++...|.   
T Consensus        34 ~~~l~~~la~~~~~~--~v~~~~ggt~al~~~~~~~~~~-----------~~~gd-~Vl~~~~~~~~~~~~~~~~g~---   96 (375)
T 2fnu_A           34 SLLFEEALCEFLGVK--HALVFNSATSALLTLYRNFSEF-----------SADRN-EIITTPISFVATANMLLESGY---   96 (375)
T ss_dssp             HHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHSSCC-----------CTTSC-EEEECSSSCTHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHhccc-----------CCCCC-EEEECCCccHhHHHHHHHCCC---
Confidence            346677799999987  6999999999999999877310           01445 899999999999999999888   


Q ss_pred             CeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccc
Q psy12303        194 NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       194 ~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~  273 (480)
                      +++.+++++++.+|+++|+++++++      +++|+++++   +|.+.|+++|.++|++||+++|+|++|+.+...... 
T Consensus        97 ~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~-  166 (375)
T 2fnu_A           97 TPVFAGIKNDGNIDELALEKLINER------TKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNK-  166 (375)
T ss_dssp             EEEECCBCTTSSBCGGGSGGGCCTT------EEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTE-
T ss_pred             EEEEeccCCCCCCCHHHHHhhcCcC------ceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCe-
Confidence            8889999887889999999988654      888887776   899999999999999999999999999987654221 


Q ss_pred             cCcccCCCCCCccceeCccccCCCcccceEEEEe-CchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHH
Q psy12303        274 RHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFK-QDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL  352 (480)
Q Consensus       274 ~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~  352 (480)
                         .+.....+++.++++||+++ | |+|++++. ++++............  .+.. ...++...++.  ..+...+.+
T Consensus       167 ---~~~~~~~i~~~s~s~~K~~~-~-g~g~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~--~~~~~~~~~  236 (375)
T 2fnu_A          167 ---KVGGFALASVFSFHAIKPIT-T-AEGGAVVTNDSELHEKMKLFRSHGM--LKKD-FFEGEVKSIGH--NFRLNEIQS  236 (375)
T ss_dssp             ---ETTSSSSEEEEECCTTSSSC-C-SSCEEEEESCHHHHHHHHHHTBTTE--EESS-SSCEEESSCCC--BCCCCHHHH
T ss_pred             ---eccccCCeEEEeCCCCCCcc-c-cCceEEEeCCHHHHHHHHHHHhcCC--cccc-ccccccccccc--cCCCCHHHH
Confidence               12212245666777889995 4 78888885 4544433321111000  0000 00000011110  001233333


Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC---cee--EEEEEeecCccCCCchhhHHHHhhhhhHH
Q psy12303        353 WLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP---EMV--NVSFWYLPTRVRNMPHEKRLNILGEITPI  427 (480)
Q Consensus       353 ~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~---~~~--~v~f~~~~~~~~~~~~~~~~~~l~~~~~~  427 (480)
                      .+.+.  ..+++++..++..++++++.+.|++ ++++++..++   ..+  .+.+.+......           +  ..+
T Consensus       237 a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~--~~~  300 (375)
T 2fnu_A          237 ALGLS--QLKKAPFLMQKREEAALTYDRIFKD-NPYFTPLHPLLKDKSSNHLYPILMHQKFFT-----------C--KKL  300 (375)
T ss_dssp             HHHHH--HHTTHHHHHHHHHHHHHHHHHHHTT-CSSEEESGGGCSSCCCCSCEEEEECGGGGG-----------G--HHH
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHHHHHHHhhc-CCCccccCCCCCCCcceEEEEEEeCccccc-----------h--HHH
Confidence            33332  3456788889999999999999999 8899886431   112  223333211000           0  245


Q ss_pred             HHHHHHhcccEEEeee-e------eC-------C------cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        428 LKGRMMQAGTMMVGYQ-P------LN-------D------LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       428 i~~~l~~~g~~~~~~~-~------~~-------~------~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.+.|.+.|+.+.... +      +.       -      ..+++|++ ++..+|++||++++++|++++++
T Consensus       301 l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~-~~~~~t~~~i~~~~~~l~~~~~~  371 (375)
T 2fnu_A          301 ILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLP-CHANLNLESVQNIAHSVLKTFES  371 (375)
T ss_dssp             HHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEEC-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEec-CCCCCCHHHHHHHHHHHHHHHHH
Confidence            6777878874433110 0      00       0      02689999 88899999999999999987654

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.95  E-value=5.1e-26  Score=222.58  Aligned_cols=290  Identities=16%  Similarity=0.079  Sum_probs=207.6

Q ss_pred             HHHHHHHHHHhCC-CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        115 TVVLEKMRQIIGW-QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       115 ~~~~~~la~~~g~-~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      .++++++++++|. ++.++++|+|||+|+..++.++..              ||+ .|+++..+|.++...++..|.   
T Consensus        70 ~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~--------------~gd-~Vl~~~~~~~~~~~~~~~~g~---  131 (367)
T 3euc_A           70 EALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAAR--------------PGA-KVMAPVPGFVMYAMSAQFAGL---  131 (367)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTCC--------------TTC-EEEEEESCSCCSCHHHHTTTC---
T ss_pred             HHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHcC--------------CCC-EEEEcCCCHHHHHHHHHHcCC---
Confidence            4567778999999 667899999999999999887643              445 788888899999999998888   


Q ss_pred             CeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc---ChHHHHHHHHHc--CcEEEeecccccccc
Q psy12303        194 NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD---PIEEIADICQKY--NMWLHVDAAWGGGLL  268 (480)
Q Consensus       194 ~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~---~l~~I~~i~~~~--~~~l~vD~a~~~~~~  268 (480)
                      +++.+|.++++.+|+++|++++++.     ++++|++++++|++|.+.   ++++|.++|++|  |+++|+|++|+.+..
T Consensus       132 ~~~~v~~~~~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~  206 (367)
T 3euc_A          132 EFVGVPLRADFTLDRGAMLAAMAEH-----QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQ  206 (367)
T ss_dssp             EEEEEECCTTSCCCHHHHHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSS
T ss_pred             eEEEecCCCCCCCCHHHHHHHhhcc-----CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcc
Confidence            8899999988999999999999873     188999999999999995   478888889999  999999999987542


Q ss_pred             ccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCC
Q psy12303        269 LSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHND  348 (480)
Q Consensus       269 ~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~  348 (480)
                      ....   +... ..+.++++.|++|++..+.++|+++. +++...........|-                       ..
T Consensus       207 ~~~~---~~~~-~~~~~i~~~s~sK~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~-----------------------~~  258 (367)
T 3euc_A          207 ESWM---SRLT-DFGNLLVMRTVSKLGLAGIRLGYVAG-DPQWLEQLDKVRPPYN-----------------------VN  258 (367)
T ss_dssp             CCSG---GGGG-TCTTEEEEEECCCTTSCSCCEEEEEE-CHHHHHHHGGGCCSSC-----------------------CC
T ss_pred             cchH---HHHh-hCCCEEEEecchhhcccccCceeeee-CHHHHHHHHHhCCCCC-----------------------CC
Confidence            1111   0111 11455778899999544467888886 4444444322111110                       12


Q ss_pred             chHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHH
Q psy12303        349 IFKLWLQWRAKG-DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPI  427 (480)
Q Consensus       349 ~l~~~~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~  427 (480)
                      .+..+++...+. .+.+++..++..++++++.+.|++ +|++++. ++....+.+.+ + .                ..+
T Consensus       259 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~-~~~~~~~~~~~-~-~----------------~~~  318 (367)
T 3euc_A          259 VLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAA-HGGVTVF-PSAANFLLARV-P-D----------------AAQ  318 (367)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHT-STTCEEC-CCSSSEEEEEC-S-C----------------HHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh-CCCcEEC-CCCCeEEEEEC-C-C----------------HHH
Confidence            333333333332 556788889999999999999999 8899963 44444444432 2 1                245


Q ss_pred             HHHHHHhcccEEEeeeeeC-CcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        428 LKGRMMQAGTMMVGYQPLN-DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       428 i~~~l~~~g~~~~~~~~~~-~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.+.|.+.|+.+....... ...+++|++ .+   +++|+++++++|++++++
T Consensus       319 l~~~l~~~gi~v~~~~~~~~~~~~~iRis-~~---~~~~i~~~~~~l~~~l~~  367 (367)
T 3euc_A          319 TFDRLLARKVLIKNVSKMHPLLANCLRVT-VS---TPEENAQFLEAFAASLQD  367 (367)
T ss_dssp             HHHHHHTTTEECEECGGGCGGGTTEEEEE-CC---CHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHCCeEEEECCccCCCCCCEEEEe-cC---CHHHHHHHHHHHHHHhcC
Confidence            6777888885543322211 115799999 43   899999999999998753

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.94  E-value=7.1e-26  Score=224.77  Aligned_cols=319  Identities=17%  Similarity=0.159  Sum_probs=211.8

Q ss_pred             hhcChhhHHHHHHHHHHHHHHhC--CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhH
Q psy12303        104 YEIAPVFILMETVVLEKMRQIIG--WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV  181 (480)
Q Consensus       104 ~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~  181 (480)
                      |.......++++++.+++.+.+|  .++.++++|+|||+|+..++.+++.              ||+ .|+++.++|+++
T Consensus        71 y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--------------~gd-~vl~~~p~~~~~  135 (407)
T 2zc0_A           71 YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLID--------------PGD-VVITENPSYINT  135 (407)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCC--------------TTC-EEEEEESCCHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcC--------------CCC-EEEEeCCChHHH
Confidence            54444567888888888888778  4567899999999999999988853              445 788888999999


Q ss_pred             HHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEE-EeccCCCccccccChH---HHHHHHHHcCcEE
Q psy12303        182 RSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFV-NCTSGTTVLGAFDPIE---EIADICQKYNMWL  257 (480)
Q Consensus       182 ~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v-~~~~~~~~~G~~~~l~---~I~~i~~~~~~~l  257 (480)
                      ..++...|.   +++.+|.++++ +|+++|++++++....+.++++| ++++++|++|.+.|++   +|.++|++||+++
T Consensus       136 ~~~~~~~g~---~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~l  211 (407)
T 2zc0_A          136 LLAFEQLGA---KIEGVPVDNDG-MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLI  211 (407)
T ss_dssp             HHHHHTTTC---EEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEE
T ss_pred             HHHHHHcCC---EEEEcccCCCC-CCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence            999988887   78888887665 99999999998433233347786 5889999999999876   9999999999999


Q ss_pred             EeeccccccccccccccCcccCCC--CCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccC
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLTGI--ERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYD  335 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~~~--~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  335 (480)
                      |+|++|+.+.+......  .+..+  .+.++++.+++|+++.+..+|+++++ +++..........+..           
T Consensus       212 i~De~~~~~~~~~~~~~--~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~-----------  277 (407)
T 2zc0_A          212 IEDTAYNFMRYEGGDIV--PLKALDNEGRVIVAGTLSKVLGTGFRIGWIIAE-GEILKKVLMQKQPIDF-----------  277 (407)
T ss_dssp             EEECTTTTSBSSCSSCC--CGGGGCSSCCEEEEEESTTTTCTTSCCEEEECC-HHHHHHHHHHHTTTTS-----------
T ss_pred             EEECCCcccccCCCCCC--ChhhcCCCCCEEEEcccccccCCCcceEEEecC-HHHHHHHHHHHHhhcC-----------
Confidence            99999998754221110  11111  13446777899999944578998875 4444433211111100           


Q ss_pred             CCCccccCCCCCCchHHHHHHHHhc-H-HHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCc
Q psy12303        336 TGDKVIQCGRHNDIFKLWLQWRAKG-D-EGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMP  413 (480)
Q Consensus       336 ~~~~~~~~~r~~~~l~~~~~l~~~g-~-~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~  413 (480)
                             .+.......+...++... . +.+++..++..++++++.+.|+++.++++++. |..+.+++...+....   
T Consensus       278 -------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~---  346 (407)
T 2zc0_A          278 -------CAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTK-PIAGMFVMFFLPEGAD---  346 (407)
T ss_dssp             -------SSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCC-CSBSSEEEEECSTTCC---
T ss_pred             -------CCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEec-CCCcEEEEEEcCCCCC---
Confidence                   000011112222232211 2 44666778888899999999986236777643 4444443322222111   


Q ss_pred             hhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeC---CcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        414 HEKRLNILGEITPILKGRMMQA-GTMMVGYQPLN---DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       414 ~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~---~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                                 ..++.+.|.++ |+.+.....+.   ...+++|++ ++.. |+++|++++++|++++++
T Consensus       347 -----------~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis-~~~~-~~~~i~~~~~~l~~~l~~  403 (407)
T 2zc0_A          347 -----------GISFANELMEREGVVVVPGKPFYTDESGKNAIRLN-FSRP-SKEEIPIGIKKLAKLYKE  403 (407)
T ss_dssp             -----------HHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEE-CSSS-CTTHHHHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEE-eCCC-CHHHHHHHHHHHHHHHHH
Confidence                       23567778788 74433321111   114799999 4444 899999999999987653

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.94  E-value=3.8e-25  Score=215.28  Aligned_cols=294  Identities=12%  Similarity=0.040  Sum_probs=211.9

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      ..++++++++++|.++.++++|+|||+|+..++.++..              ||+ .|+++..+|+++...++..|.   
T Consensus        53 ~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--------------~gd-~vl~~~~~~~~~~~~~~~~g~---  114 (354)
T 3ly1_A           53 ILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYAS--------------LEA-QLVIPELTYGDGEHFAKIAGM---  114 (354)
T ss_dssp             HHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHCC--------------TTC-EEEEESSSCTHHHHHHHHTTC---
T ss_pred             hHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHhC--------------CCC-eEEECCCCchHHHHHHHHcCC---
Confidence            35678889999999878999999999999999987743              445 788888999999999999988   


Q ss_pred             CeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHH--cCcEEEeeccccccccccc
Q psy12303        194 NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQK--YNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       194 ~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~--~~~~l~vD~a~~~~~~~~~  271 (480)
                      +++.+|.++++.+|+++|++++++.    .++++|++++++|++|.+.|++++.++++.  +|+++|+|++|+.+.....
T Consensus       115 ~~~~~~~~~~~~~d~~~l~~~l~~~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~  190 (354)
T 3ly1_A          115 KVTKVKMLDNWAFDIEGLKAAVAAY----SGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPR  190 (354)
T ss_dssp             EEEEECCCTTSCCCHHHHHHHHHTC----SSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTT
T ss_pred             EEEEecCCCCCCCCHHHHHHHhccC----CCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccc
Confidence            8899999888999999999999731    128999999999999999999998888888  9999999999997654221


Q ss_pred             cccC-cccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCc
Q psy12303        272 KYRH-PRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI  349 (480)
Q Consensus       272 ~~~~-~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~  349 (480)
                      .... .......+.++++.|+||+++ .+.++|+++. ++............+                       ....
T Consensus       191 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~-----------------------~~~~  246 (354)
T 3ly1_A          191 FRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVA-HPTVIALMGRYVAGE-----------------------KINF  246 (354)
T ss_dssp             CCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEEC-CHHHHHHHGGGTTCS-----------------------CCCH
T ss_pred             cCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeec-CHHHHHHHHHhcCCC-----------------------CCCH
Confidence            1000 011111144578889999997 4467888886 445544432211110                       0123


Q ss_pred             hHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHH
Q psy12303        350 FKLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPIL  428 (480)
Q Consensus       350 l~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i  428 (480)
                      +..++....+ ..+.+++..++..++++++.+.|++ . +++++ ++....+.+.+ +..                ..++
T Consensus       247 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~-~~~~~-~~~~~~~~~~~-~~~----------------~~~~  306 (354)
T 3ly1_A          247 SGVDAALASMNDSAFITYSKKSNDVSRQILLKALED-L-KLPYL-PSEGNFVFHQL-VVP----------------LKDY  306 (354)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBC-CCCSSEEEEEC-SSC----------------HHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCeEC-CCCceEEEEEC-CCC----------------HHHH
Confidence            3344443333 2366788889999999999999998 5 77764 44444444432 211                2456


Q ss_pred             HHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        429 KGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       429 ~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+.|.+.|+. +. +.+.+..+++|+++ +   +++|++++++.|++++++
T Consensus       307 ~~~l~~~gi~-v~-g~~~~~~~~iRis~-~---~~~~i~~~~~~l~~~l~~  351 (354)
T 3ly1_A          307 QTHMADAGVL-IG-RAFPPADNWCRISL-G---TPQEMQWVADTMREFRKK  351 (354)
T ss_dssp             HHHHHHTTEE-CC-CCCTTCTTEEEEEC-C---CHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCEE-Ee-ecCCCCCCEEEEEc-C---CHHHHHHHHHHHHHHHHh
Confidence            7778888844 44 33333368999993 3   799999999999998753

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.94  E-value=2.5e-26  Score=225.34  Aligned_cols=305  Identities=13%  Similarity=0.081  Sum_probs=205.9

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++.+++++|.+  .+++++|||+|+..++.+++-.             ||+ .|+++..+|+++..++...|.   +
T Consensus        41 ~~l~~~la~~~~~~--~~~~~~~gt~a~~~~~~~~~~~-------------~gd-~v~~~~~~~~~~~~~~~~~g~---~  101 (374)
T 3uwc_A           41 EKFEKRFAALHNAP--HAIGVGTGTDALAMSFKMLNIG-------------AGD-EVITCANTFIASVGAIVQAGA---T  101 (374)
T ss_dssp             HHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTTCC-------------TTC-EEEEESSSCHHHHHHHHHTTC---E
T ss_pred             HHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCCC-------------CCC-EEEECCCccHHHHHHHHHcCC---E
Confidence            44566788888887  5899999999999888776211             445 788999999999999999988   8


Q ss_pred             eEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccccccc
Q psy12303        195 CVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYR  274 (480)
Q Consensus       195 v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~  274 (480)
                      ++.++.++++.+|+++|+++++++      +++|+   ++|++|.+.|+++|.++|++||+++|+|++|+.+...... .
T Consensus       102 ~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~-~  171 (374)
T 3uwc_A          102 PVLVDSENGYVIDPEKIEAAITDK------TKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDK-F  171 (374)
T ss_dssp             EEEECBCTTSSBCGGGTGGGCCTT------EEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTE-E
T ss_pred             EEEEecCCCCCcCHHHHHHhCCCC------ceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCe-e
Confidence            899999888899999999988764      77777   7789999999999999999999999999999976542211 1


Q ss_pred             CcccCCCCCCccceeCcc--ccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHH
Q psy12303        275 HPRLTGIERADSVTWNPH--KLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL  352 (480)
Q Consensus       275 ~~~~~~~~~~D~~~~s~h--K~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~  352 (480)
                      .    +. .+|++++|+|  |+++++...|+++.+++................       .+....    .+.......+
T Consensus       172 ~----~~-~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~----~~~~~~~~~~  235 (374)
T 3uwc_A          172 V----GS-WGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLIN-------RDVCVE----YGINCRMDTI  235 (374)
T ss_dssp             T----TS-SSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEE-------TTEESS----CCCBCBCCHH
T ss_pred             c----cc-cccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCccc-------cCcccc----ccccCCCCHH
Confidence            1    11 3699999977  999863446777766655543332111100000       000000    1111222233


Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC-eEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHH
Q psy12303        353 WLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDK-FYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGR  431 (480)
Q Consensus       353 ~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g-~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~  431 (480)
                      .+++.....+++++..++..++++++.+.|.+ .++ +++...+......|...+.....             ..++.+.
T Consensus       236 ~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~~  301 (374)
T 3uwc_A          236 QAVIANRLMNQLETITEKRRGIAHLYDQSFVD-LSEFIDVPVRREGVYHVFHIYVLRVKY-------------RDQLFQY  301 (374)
T ss_dssp             HHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGG-GTTTEECCCCCTTEECCCSSEEEEETT-------------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCeEEeccCCCCCceeeEEEEEEcCC-------------HHHHHHH
Confidence            33333333456778889999999999999999 787 88754333222111111001000             2456778


Q ss_pred             HHhcccEEEeeee--e------C--C------------cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        432 MMQAGTMMVGYQP--L------N--D------------LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       432 l~~~g~~~~~~~~--~------~--~------------~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      |.++|+.+....+  .      .  +            ....+|++ ++..+|++||+++++.|++++++
T Consensus       302 L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~-~~~~~t~edi~~~~~~l~~~l~~  370 (374)
T 3uwc_A          302 LKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLP-AHPYLTEEEINYIIKKVREFYLE  370 (374)
T ss_dssp             HHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEEC-CCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEcc-CCCCCCHHHHHHHHHHHHHHHHh
Confidence            8888854322110  0      0  0            02689999 88999999999999999998764

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.94  E-value=1.4e-25  Score=221.16  Aligned_cols=325  Identities=10%  Similarity=0.034  Sum_probs=217.4

Q ss_pred             HHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCC-CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCcc
Q psy12303         89 AGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGG-DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAI  165 (480)
Q Consensus        89 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~  165 (480)
                      +.+.+...+......|....+..++++++.+++.+.+|.  +++ ++++|+|+|+|+..++.++..              
T Consensus        48 v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~--------------  113 (386)
T 1u08_A           48 LQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVR--------------  113 (386)
T ss_dssp             HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCC--------------
T ss_pred             HHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhCC--------------
Confidence            335555444332334544455788999999999998885  456 899999999999999988743              


Q ss_pred             CCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC--
Q psy12303        166 KGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP--  242 (480)
Q Consensus       166 ~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~--  242 (480)
                      ||+ .|+++.++|+++...++..|.   +++.+|.++ ++.+|+++|++++++.      +++|++++++|++|.+.|  
T Consensus       114 ~gd-~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~p~nptG~~~~~~  183 (386)
T 1u08_A          114 NGD-EVICFDPSYDSYAPAIALSGG---IVKRMALQPPHFRVDWQEFAALLSER------TRLVILNTPHNPSATVWQQA  183 (386)
T ss_dssp             TTC-EEEEEESCCTTHHHHHHHTTC---EEEEEECCTTTCCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHH
T ss_pred             CCC-EEEEeCCCchhHHHHHHHcCC---EEEEeecCcccCcCCHHHHHHhhccc------CEEEEEeCCCCCCCccCCHH
Confidence            445 788888899999999999888   788999876 5789999999998643      899999999999999976  


Q ss_pred             -hHHHHHHHHHcCcEEEeeccccccccccccccC-cccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCC
Q psy12303        243 -IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH-PRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMS  319 (480)
Q Consensus       243 -l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~  319 (480)
                       +++|.++|++||+++|+|++|+.+.+....... ..+.+..+.|+++.|+||+++.| ..+|+++++ ++.........
T Consensus       184 ~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~  262 (386)
T 1u08_A          184 DFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAP-APISAEIRKVH  262 (386)
T ss_dssp             HHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcC-HHHHHHHHHHH
Confidence             699999999999999999999986542211100 00100125789999999999843 458998875 44443322110


Q ss_pred             cccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeE
Q psy12303        320 AEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVN  399 (480)
Q Consensus       320 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~  399 (480)
                      . +..              +   ........++..+++. +.+.++++.++..++++++.+.|++ . |+++. .|..+.
T Consensus       263 ~-~~~--------------~---~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~~g~  320 (386)
T 1u08_A          263 Q-YLT--------------F---SVNTPAQLALADMLRA-EPEHYLALPDFYRQKRDILVNALNE-S-RLEIL-PCEGTY  320 (386)
T ss_dssp             H-HHT--------------S---SCCHHHHHHHHHHHHH-CTHHHHTHHHHHHHHHHHHHHHTTS-S-SCEEC-CCCBSS
T ss_pred             H-hhc--------------c---CCChHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHH-C-CCeec-CCCceE
Confidence            0 000              0   0000111223333333 3566788889999999999999999 5 88875 454444


Q ss_pred             EEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeC---CcccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        400 VSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLN---DLPNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       400 v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~---~~~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                      +++...+.. ...+           ..++.+.|. +.|+.+.....+.   ...+++|+++.   +++++|++++++|++
T Consensus       321 ~~~~~~~~~-~~~~-----------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~---~~~~~i~~~~~~l~~  385 (386)
T 1u08_A          321 FLLVDYSAV-STLD-----------DVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA---KKESTLLAAAERLRQ  385 (386)
T ss_dssp             EEEEECTTT-CCSC-----------HHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC---SCHHHHHHHHHHHTT
T ss_pred             EEEEecCCC-CCCC-----------HHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc---CCHHHHHHHHHHHhh
Confidence            333222211 0000           235666666 4675443322221   11579999943   489999999999865

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.94  E-value=1.2e-25  Score=220.31  Aligned_cols=312  Identities=11%  Similarity=0.074  Sum_probs=215.5

Q ss_pred             HHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCc
Q psy12303         91 EWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQ  168 (480)
Q Consensus        91 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~  168 (480)
                      +.+...+......|.......++++++.+++.+.+|.  +++++++|+|||+|+..++.++.+              ||+
T Consensus        49 ~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~--------------~gd  114 (370)
T 2z61_A           49 DEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIID--------------DGD  114 (370)
T ss_dssp             HHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHCC--------------TTC
T ss_pred             HHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhcC--------------CCC
Confidence            4444444332334544455678888988888887774  557899999999999999988743              445


Q ss_pred             eEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHH
Q psy12303        169 LVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIAD  248 (480)
Q Consensus       169 ~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~  248 (480)
                       .|+++.++|+++...+...|.   +++.+|      +|+++|++++++.      +++|++++++|++|.+.|++ |.+
T Consensus       115 -~vl~~~p~~~~~~~~~~~~g~---~~~~v~------~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~-l~~  177 (370)
T 2z61_A          115 -EVLIQNPCYPCYKNFIRFLGA---KPVFCD------FTVESLEEALSDK------TKAIIINSPSNPLGEVIDRE-IYE  177 (370)
T ss_dssp             -EEEEESSCCTHHHHHHHHTTC---EEEEEC------SSHHHHHHHCCSS------EEEEEEESSCTTTCCCCCHH-HHH
T ss_pred             -EEEEeCCCchhHHHHHHHcCC---EEEEeC------CCHHHHHHhcccC------ceEEEEcCCCCCcCcccCHH-HHH
Confidence             788889999999999999887   777777      6899999988653      88999999999999999999 999


Q ss_pred             HHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccc
Q psy12303        249 ICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQD  327 (480)
Q Consensus       249 i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  327 (480)
                      +|++||+++|+|++|+.+.........-.+.+..+.|+++.|+||+++.| ..+|++++++ +...........+..   
T Consensus       178 ~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~~~~~~~~~~~---  253 (370)
T 2z61_A          178 FAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISND-EIIEAILKLQQNLFI---  253 (370)
T ss_dssp             HHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCH-HHHHHHHHHHHHHTS---
T ss_pred             HHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECH-HHHHHHHHHHhhccc---
Confidence            99999999999999998765221101001112336789999999999743 4588888654 444332211111000   


Q ss_pred             cccCcccCCCCccccCCCCCCchHHHHHHHHh---cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEe
Q psy12303        328 KLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK---GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWY  404 (480)
Q Consensus       328 ~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~---g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~  404 (480)
                                        ....+..+++...+   +.+.+++..++..++++++.+.|++ . |+++. .|..+.+++..
T Consensus       254 ------------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~~~~~~~~~  312 (370)
T 2z61_A          254 ------------------SAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKD-F-GWEVN-NPIGAYYVFPN  312 (370)
T ss_dssp             ------------------SSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCBCC-CCCBTTEECCB
T ss_pred             ------------------CCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH-c-CCeec-CCCcceEEEEe
Confidence                              01233333333333   3566788888999999999999999 5 88764 45555444322


Q ss_pred             ecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCC--cccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        405 LPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLND--LPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       405 ~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~--~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .+.  .              ..++.+.|. +.|+.+ .++...+  ..+++|++ ..  +++++|+++++.|+++++
T Consensus       313 ~~~--~--------------~~~~~~~l~~~~gi~v-~~g~~f~~~~~~~~Ri~-~~--~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          313 IGE--D--------------GREFAYKLLKEKFVAL-TPGIGFGSKGKNYIRIS-YA--NSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             CSS--C--------------HHHHHHHHHHHHCEEC-EEGGGGCGGGSSBEEEE-CC--SCHHHHHHHHHHHHHHHC
T ss_pred             cCC--C--------------HHHHHHHHHHhCCEEE-eCchhhCCCCCCEEEEE-Ee--CCHHHHHHHHHHHHHHHh
Confidence            221  0              235667776 567444 3322112  14699999 44  699999999999998765

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.94  E-value=1.4e-25  Score=222.10  Aligned_cols=308  Identities=12%  Similarity=-0.013  Sum_probs=212.4

Q ss_pred             hHHHHHHHHHHHHHHhC--CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH
Q psy12303        110 FILMETVVLEKMRQIIG--WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV  187 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g--~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~  187 (480)
                      ..++++.+.+++.+.+|  .++.++++|+|||+|+..++.++..              ||+ .|+++.++|+++..++..
T Consensus        68 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~--------------~gd-~vl~~~p~~~~~~~~~~~  132 (399)
T 1c7n_A           68 TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTK--------------PGD-GVIIITPVYYPFFMAIKN  132 (399)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCC--------------TTC-EEEECSSCCTHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcC--------------CCC-EEEEcCCCcHhHHHHHHH
Confidence            67888888888888888  5567899999999999999987743              445 788899999999999998


Q ss_pred             cCCCCCCeEEeeCC-CC--CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCcEEEeec
Q psy12303        188 CGLGTDNCVEVPSD-KR--GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMWLHVDA  261 (480)
Q Consensus       188 ~g~~~~~v~~v~~~-~~--~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~  261 (480)
                      .|.   +++.+|.+ ++  +.+|+++|++++++.     ++++|++++++|++|.+.|   +++|.++|++||+++|+|+
T Consensus       133 ~g~---~~~~~~~~~~~g~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De  204 (399)
T 1c7n_A          133 QER---KIIECELLEKDGYYTIDFQKLEKLSKDK-----NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDE  204 (399)
T ss_dssp             TTC---EEEECCCEEETTEEECCHHHHHHHHTCT-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEEC
T ss_pred             cCC---EEEecccccCCCCEEEcHHHHHHHhccC-----CCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEc
Confidence            887   78888875 33  369999999998721     2889999999999999988   9999999999999999999


Q ss_pred             cccccccccccccCcccCCC----CCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccCC
Q psy12303        262 AWGGGLLLSKKYRHPRLTGI----ERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDT  336 (480)
Q Consensus       262 a~~~~~~~~~~~~~~~~~~~----~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  336 (480)
                      +|+.+....... . .+..+    ...++++.+++|+++.| .++|+++++++++..........+.            .
T Consensus       205 ~~~~~~~~g~~~-~-~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~------------~  270 (399)
T 1c7n_A          205 IHFDLIMPGYEH-T-VFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATS------------G  270 (399)
T ss_dssp             TTTTCBCTTCCC-C-CGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTT------------C
T ss_pred             cccccccCCCCc-c-cHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcc------------c
Confidence            999865422111 0 11111    13457788999999843 5689999876655543321111110            0


Q ss_pred             CCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCch
Q psy12303        337 GDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPH  414 (480)
Q Consensus       337 ~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~  414 (480)
                            .+  ...+..+++...+  +.+.+++..++..++++++.+.|++++|+++++ ++..+.+++...+..  +.+ 
T Consensus       271 ------~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~-  338 (399)
T 1c7n_A          271 ------MP--FTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP-LIEGTYLQWIDFRAL--KMD-  338 (399)
T ss_dssp             ------CC--CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC-CCSBSSEEEEECGGG--CCC-
T ss_pred             ------CC--CCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEe-cCCceEEEEEEcccC--CCC-
Confidence                  00  1222333332222  356778888889999999999998624788764 455555543222211  000 


Q ss_pred             hhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeC-CcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        415 EKRLNILGEITPILKGRMM-QAGTMMVGYQPLN-DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       415 ~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~-~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                                ..++.+.|. +.|+.+.....+. ...+++|+++. .  ++++|+++++.|++++++
T Consensus       339 ----------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~-~--~~~~l~~~l~~l~~~l~~  392 (399)
T 1c7n_A          339 ----------HKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLA-A--PSSVIQESLERLNKALKD  392 (399)
T ss_dssp             ----------HHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECC-S--CHHHHHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEec-c--CHHHHHHHHHHHHHHHHH
Confidence                      235677786 5775544322221 11579999943 3  389999999999887653

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.94  E-value=3.7e-26  Score=231.18  Aligned_cols=322  Identities=12%  Similarity=0.022  Sum_probs=204.6

Q ss_pred             hcChhhHHHHHHHHHHHHHHhCCCCCC----eEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchh
Q psy12303        105 EIAPVFILMETVVLEKMRQIIGWQGGD----SILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS  180 (480)
Q Consensus       105 ~~~~~~~~~e~~~~~~la~~~g~~~~~----~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s  180 (480)
                      ...+...++|+.+++++++++|+++.+    +++++ |+.+|..++.++.+              ||+ .|+++..+|.+
T Consensus        83 ~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~s-Gs~an~~~~~all~--------------pGD-~Vl~~~~~~~~  146 (483)
T 1rv3_A           83 GGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYS-GSPANFAVYTALVE--------------PHG-RIMGLDLPDGG  146 (483)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSS-HHHHHHHHHHHHTC--------------TTC-EEEEECGGGTC
T ss_pred             CcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECC-cHHHHHHHHHHhcC--------------CCC-EEEEecCccCc
Confidence            345567889999999999999997643    55555 44888887877643              666 78888888877


Q ss_pred             HHHH--------HHHcCCCCCCeEEeeCC-CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHH
Q psy12303        181 VRSC--------AAVCGLGTDNCVEVPSD-KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQ  251 (480)
Q Consensus       181 ~~~~--------~~~~g~~~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~  251 (480)
                      +...        +...|... .++.++++ +++.+|+++|++++++.     +|++|++ +++|++ .+.|+++|.++|+
T Consensus       147 ~~~~~~~~~~~~v~~~G~~~-~~v~~~~~~~~~~iD~d~le~~i~~~-----~tklIi~-~~sn~~-~~~dl~~i~~ia~  218 (483)
T 1rv3_A          147 HLTHGFMTDKKKISATSIFF-ESMAYKVNPDTGYIDYDRLEENARLF-----HPKLIIA-GTSCYS-RNLDYGRLRKIAD  218 (483)
T ss_dssp             CGGGCCBCSSCBCSHHHHHS-EEEEECBCTTTCSBCHHHHHHHHHHH-----CCSEEEE-CCSSCC-SCCCHHHHHHHHH
T ss_pred             CcchhhhhcccCcccccceE-EEEECccccCCCcCCHHHHHHHHhhc-----CCcEEEE-eCCcCC-CcCCHHHHHHHHH
Confidence            6432        22233211 33444446 56899999999999843     2888888 777777 8899999999999


Q ss_pred             HcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhh-HhhhcCCccccccccccc
Q psy12303        252 KYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLL-ISCNQMSAEYLFMQDKLY  330 (480)
Q Consensus       252 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~~~  330 (480)
                      ++|+++|+|+||+.+....+.... .+   .++|++++++||++.+|.+ |++++++.... .........|-.. .. .
T Consensus       219 ~~g~~livD~ah~~g~~~~~~~~~-p~---~~~div~~s~~K~l~Gprg-G~i~~~~~~~~~~~~~g~~~~y~~~-~~-~  291 (483)
T 1rv3_A          219 ENGAYLMADMAHISGLVVAGVVPS-PF---EHCHVVTTTTHKTLRGCRA-GMIFYRRGVRSVDPKTGKEILYNLE-SL-I  291 (483)
T ss_dssp             HTTCEEEEECTTTHHHHHHTSSCC-GG---GTCSEEEEESSGGGCCCSC-EEEEEECSBCC-------CCBCCHH-HH-H
T ss_pred             HcCCEEEEEccchhcccccCCCCC-CC---CCCcEEEecCcccCCCCCc-eEEEEcchhhhhccccCcchhhHHH-HH-h
Confidence            999999999999877665443333 22   2689999999999988877 99998875210 0000000000000 00 0


Q ss_pred             CcccCCCCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCce-eEEEEEeecCc
Q psy12303        331 DVRYDTGDKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEM-VNVSFWYLPTR  408 (480)
Q Consensus       331 ~~~~~~~~~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~-~~v~f~~~~~~  408 (480)
                      ......+   .+++... ...++..+++.....+++++.++..++++++.+.|.+ . |++++.+... ..+.+.+.+..
T Consensus       292 ~~~~~~~---~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~v~~~~~g  366 (483)
T 1rv3_A          292 NSAVFPG---LQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVE-L-GYKIVTGGSDNHLILVDLRSKG  366 (483)
T ss_dssp             HHHHTTT---TCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEGGGSCSSSEEEEEGGGGT
T ss_pred             hhhcCCc---ccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHh-c-CCEeccCCCCCceEEEeccCCC
Confidence            0000000   0111111 1234445566555567889999999999999999999 5 9998754222 23333322211


Q ss_pred             cCCCchhhHHHHhhhhhHHHHHHHHhcccEEEe---eeee--CCcccEEEEecccCCCC----HHHHHHHHHHHHHhhc
Q psy12303        409 VRNMPHEKRLNILGEITPILKGRMMQAGTMMVG---YQPL--NDLPNFFRNIISSAAVT----EGDIDFLLTEMDRLGH  478 (480)
Q Consensus       409 ~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~---~~~~--~~~~~~~R~~~~~~~~t----~~di~~~~~~l~~~~~  478 (480)
                      ..              ..++.+.|.+.|+.+..   ++..  .+ .+++|++ ....+|    ++|++++++.|+++++
T Consensus       367 ~~--------------~~~~~~~L~~~gI~v~~~~~pg~~~~~~-~~~iRis-~~~~~t~g~~~edi~~~~~~l~~~l~  429 (483)
T 1rv3_A          367 TD--------------GGRAEKVLEACSIACNKNTCPGDKSALR-PSGLRLG-TPALTSRGLLEKDFQKVAHFIHRGIE  429 (483)
T ss_dssp             CC--------------HHHHHHHHHHTTEECEEECCSSCSCTTS-CCEEEEE-CHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CC--------------HHHHHHHHHhCCcEEecCCCCCCCcCCC-CceEEee-cCCcccCCCCHHHHHHHHHHHHHHHH
Confidence            11              23455666677744331   2111  12 4699999 444444    9999999999988754

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.94  E-value=1.2e-25  Score=223.36  Aligned_cols=327  Identities=13%  Similarity=0.070  Sum_probs=220.9

Q ss_pred             HHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCC-CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccC
Q psy12303         90 GEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGG-DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIK  166 (480)
Q Consensus        90 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~  166 (480)
                      .+.+...+......|....+..++++++.+++.+.+|.  +++ ++++|+|||+|+..++.++..              |
T Consensus        44 ~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~--------------~  109 (411)
T 2o0r_A           44 LQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVE--------------P  109 (411)
T ss_dssp             HHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCC--------------T
T ss_pred             HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcC--------------C
Confidence            34454444332334544455678999999999998885  455 899999999999999988743              4


Q ss_pred             CceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC---CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC-
Q psy12303        167 GQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK---RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP-  242 (480)
Q Consensus       167 g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~---~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~-  242 (480)
                      |+ .|+++..+|+++..++...|.   +++.+|.++   ++.+|+++|+++++++      +++|++++++|++|.+.| 
T Consensus       110 gd-~Vl~~~~~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~~~nptG~~~~~  179 (411)
T 2o0r_A          110 GS-EVLLIEPFYDSYSPVVAMAGA---HRVTVPLVPDGRGFALDADALRRAVTPR------TRALIINSPHNPTGAVLSA  179 (411)
T ss_dssp             TC-EEEEEESCCTTHHHHHHHTTC---EEEEEECEEETTEEECCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCH
T ss_pred             CC-EEEEeCCCcHhHHHHHHHcCC---EEEEeeccccccCCCCCHHHHHHhhccC------ceEEEEeCCCCCCCCCCCH
Confidence            45 788888999999999998888   788888865   3679999999998653      899999999999999966 


Q ss_pred             --hHHHHHHHHHcCcEEEeecccccccccccccc-CcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcC
Q psy12303        243 --IEEIADICQKYNMWLHVDAAWGGGLLLSKKYR-HPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQM  318 (480)
Q Consensus       243 --l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~-~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~  318 (480)
                        +++|.++|++||+++++|++|+.+.+...... ...+.+..+.|+++.|+||+++.| ..+|+++++ ++........
T Consensus       180 ~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~l~~~  258 (411)
T 2o0r_A          180 TELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGP-AELIAGVRAA  258 (411)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeC-HHHHHHHHHH
Confidence              59999999999999999999998764221100 001112236789999999999733 458998874 4444332211


Q ss_pred             CcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCcee
Q psy12303        319 SAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMV  398 (480)
Q Consensus       319 ~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~  398 (480)
                      . .+..              +   +.......++..+++. +.+.++++.++..++++++.+.|++ . |+++. +|..+
T Consensus       259 ~-~~~~--------------~---~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~~g  316 (411)
T 2o0r_A          259 K-QYLS--------------Y---VGGAPFQPAVALALDT-EDAWVAALRNSLRARRDRLAAGLTE-I-GFAVH-DSYGT  316 (411)
T ss_dssp             H-HHHT--------------S---CCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHH-H-TCEEC-CCCBS
T ss_pred             H-hhcc--------------C---CCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHH-c-CCEec-CCCee
Confidence            0 0000              0   0001122233334433 3667888889999999999999999 5 88875 45555


Q ss_pred             EE-EEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeee-CC-----------cccEEEEecccCCCCHH
Q psy12303        399 NV-SFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPL-ND-----------LPNFFRNIISSAAVTEG  464 (480)
Q Consensus       399 ~v-~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~-~~-----------~~~~~R~~~~~~~~t~~  464 (480)
                      .+ ++.+ +.. .+.+           ..++.++|. +.|+.+.....+ ..           ..+++|+++.   ++++
T Consensus       317 ~~~~~~~-~~~-~~~~-----------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~---~~~e  380 (411)
T 2o0r_A          317 YFLCADP-RPL-GYDD-----------STEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC---KRDD  380 (411)
T ss_dssp             SEEEEEC-GGG-TCCC-----------HHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC---SCHH
T ss_pred             EEEEEec-CCC-CCCC-----------HHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec---CCHH
Confidence            43 3433 211 0000           235666665 467544332222 10           1478999943   3899


Q ss_pred             HHHHHHHHHHHhhcc
Q psy12303        465 DIDFLLTEMDRLGHD  479 (480)
Q Consensus       465 di~~~~~~l~~~~~~  479 (480)
                      +|++++++|++++++
T Consensus       381 ~i~~~~~~l~~~~~~  395 (411)
T 2o0r_A          381 TLDEAIRRLSVLAER  395 (411)
T ss_dssp             HHHHHHHHHGGGGC-
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999987653

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.94  E-value=2.3e-25  Score=220.50  Aligned_cols=302  Identities=14%  Similarity=0.094  Sum_probs=210.5

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHc
Q psy12303        109 VFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVC  188 (480)
Q Consensus       109 ~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~  188 (480)
                      +...+.+++++++++++|.+  ++++|+|||+|+..++.++.+              ||+ .|+++.++|+++..++...
T Consensus        85 g~~~~~~~l~~~la~~~g~~--~v~~~~ggt~a~~~~~~~~~~--------------~gd-~V~~~~p~~~~~~~~~~~~  147 (398)
T 3a2b_A           85 GTLDIHVELEEKLSAYVGKE--AAILFSTGFQSNLGPLSCLMG--------------RND-YILLDERDHASIIDGSRLS  147 (398)
T ss_dssp             CCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHSSC--------------TTC-EEEEETTCCHHHHHHHHHS
T ss_pred             CCcHHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHhC--------------CCC-EEEECCccCHHHHHHHHHc
Confidence            34577788999999999985  599999999999999987743              445 8899999999999999999


Q ss_pred             CCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccc
Q psy12303        189 GLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLL  268 (480)
Q Consensus       189 g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~  268 (480)
                      |.   +++.+|.     +|+++|++++++..+  .++++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+.+
T Consensus       148 g~---~~~~v~~-----~d~~~l~~~l~~~~~--~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~  217 (398)
T 3a2b_A          148 FS---KVIKYGH-----NNMEDLRAKLSRLPE--DSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVI  217 (398)
T ss_dssp             SS---EEEEECT-----TCHHHHHHHHHTSCS--SSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTS
T ss_pred             CC---ceEEeCC-----CCHHHHHHHHHhhcc--CCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCccccc
Confidence            87   7788876     589999999876211  1389999999999999999999999999999999999999987653


Q ss_pred             ccccccCcccCCC-CCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC
Q psy12303        269 LSKKYRHPRLTGI-ERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN  347 (480)
Q Consensus       269 ~~~~~~~~~~~~~-~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~  347 (480)
                      ...........++ +++|+++.|+||+++ |.| |+++.+ ++...........+....                 +...
T Consensus       218 ~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G-G~~~~~-~~~~~~l~~~~~~~~~~~-----------------~~~~  277 (398)
T 3a2b_A          218 GHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLG-GFVAGD-ADVIDFLKHNARSVMFSA-----------------SMTP  277 (398)
T ss_dssp             SGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSC-EEEEEC-HHHHHHHHHHCHHHHSSB-----------------CCCH
T ss_pred             CCCCCchHhhcCCCcCCeEEEeccccccc-CCC-cEEEeC-HHHHHHHHHhcccceecC-----------------CCCH
Confidence            1100000011122 246999999999998 555 887764 444443322111111100                 0001


Q ss_pred             Cc-hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhH
Q psy12303        348 DI-FKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITP  426 (480)
Q Consensus       348 ~~-l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~  426 (480)
                      .. ..+..+++.+  +.++++.++..++++++.+.|++ . |++++ ++....+.+.+ +..            .+  ..
T Consensus       278 ~~~a~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~g~~~~~~~-~~~------------~~--~~  337 (398)
T 3a2b_A          278 ASVASTLKALEII--QNEPEHIEKLWKNTDYAKAQLLD-H-GFDLG-ATESPILPIFI-RSN------------EK--TF  337 (398)
T ss_dssp             HHHHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHH-T-TCCBC-SCCSSEEEEEC-CCH------------HH--HH
T ss_pred             HHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHh-c-CCCcC-CCCCCEEEEEc-CCH------------HH--HH
Confidence            11 1223344442  33567788889999999999999 5 88765 45544444432 211            00  24


Q ss_pred             HHHHHHHhcccEEEeeeeeCC---cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        427 ILKGRMMQAGTMMVGYQPLND---LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       427 ~i~~~l~~~g~~~~~~~~~~~---~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ++.+.|.++|+. +.+.....   ..+++|++ .+..++++++++++++|++++++
T Consensus       338 ~l~~~l~~~gi~-v~~~~~~~~~~~~~~iRis-~~~~~~~e~i~~~~~~l~~~l~~  391 (398)
T 3a2b_A          338 WVTKMLQDDGVF-VNPVVSPAVPAEESLIRFS-LMATHTYDQIDEAIEKMVKVFKQ  391 (398)
T ss_dssp             HHHHHHHHTTEE-CEEECTTTSCGGGCEEEEE-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCcE-EEeeCCCCCCCCCceEEEE-EeCCCCHHHHHHHHHHHHHHHHH
Confidence            677888888754 44332221   14799999 77778999999999999988764

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.94  E-value=1.9e-24  Score=211.63  Aligned_cols=290  Identities=10%  Similarity=-0.010  Sum_probs=210.0

Q ss_pred             HHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHc
Q psy12303        111 ILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVC  188 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~  188 (480)
                      .++++.+.+++.+.+|.  +++++++|+|+++++..++.++..              ||+ .|+++..+|+++..++...
T Consensus        72 ~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~--------------~gd-~Vl~~~~~y~~~~~~~~~~  136 (369)
T 3cq5_A           72 VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGG--------------PGR-TALGFQPSYSMHPILAKGT  136 (369)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCS--------------TTC-EEEEEESSCTHHHHHHHHT
T ss_pred             HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcC--------------CCC-EEEEcCCChHHHHHHHHHc
Confidence            57888888888887665  457899999999999988887743              445 7888889999999999998


Q ss_pred             CCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccc
Q psy12303        189 GLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLL  268 (480)
Q Consensus       189 g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~  268 (480)
                      |.   +++.+|.++++.+|+++|++++++.     ++++|++++++|++|.+.|++++.++|+.+++++++|++|+.+..
T Consensus       137 g~---~~~~v~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~  208 (369)
T 3cq5_A          137 HT---EFIAVSRGADFRIDMDVALEEIRAK-----QPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSP  208 (369)
T ss_dssp             TC---EEEEEECCTTSSCCHHHHHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCC
T ss_pred             CC---EEEEecCCcCCCCCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcC
Confidence            87   7889998877889999999999862     178899999999999999999999999999999999999998764


Q ss_pred             ccccccCcccCCCCC-CccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC
Q psy12303        269 LSKKYRHPRLTGIER-ADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH  346 (480)
Q Consensus       269 ~~~~~~~~~~~~~~~-~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~  346 (480)
                      ..+...  ..... + .++++.|+||+++.| .++|++++++ +...........|                     +  
T Consensus       209 ~~~~~~--~~~~~-~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~l~~~~~~~---------------------~--  261 (369)
T 3cq5_A          209 SPSATT--LLEKY-PTKLVVSRTMSKAFDFAGGRLGYFVANP-AFIDAVMLVRLPY---------------------H--  261 (369)
T ss_dssp             SCCGGG--GTTTC-TTTEEEEEESSSTTSCGGGCCEEEEECT-HHHHHHHTTSCTT---------------------C--
T ss_pred             CcchHH--HHhhC-CCCEEEEEechHhcCCcccceEEEEeCH-HHHHHHHHcCCCC---------------------C--
Confidence            211111  11212 3 568888999999743 4679988764 4444332211111                     0  


Q ss_pred             CCchHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhh
Q psy12303        347 NDIFKLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEIT  425 (480)
Q Consensus       347 ~~~l~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~  425 (480)
                      ...+..+++...+ ..+.+++..++..++++++.+.|++  +|+++. ++....+.+.+ +  ..              .
T Consensus       262 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~-~~~~~~~~~~~-~--~~--------------~  321 (369)
T 3cq5_A          262 LSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEE--LGYAVV-PSESNFVFFGD-F--SD--------------Q  321 (369)
T ss_dssp             SCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHH--HTCEEE-CCSSSEEEEEC-C--SS--------------H
T ss_pred             CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh--CCCEEC-CCCCeEEEEEC-C--CC--------------H
Confidence            1233333333333 1345778888899999999999998  588876 45555444432 2  10              2


Q ss_pred             HHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        426 PILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       426 ~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .++.+.|.+.|+. +.+.  .. .+++|++ ++   +++|++++++.|+++++
T Consensus       322 ~~l~~~l~~~gi~-v~~~--~~-~~~iRis-~~---~~~~i~~~~~~l~~~~~  366 (369)
T 3cq5_A          322 HAAWQAFLDRGVL-IRDV--GI-AGHLRTT-IG---VPEENDAFLDAAAEIIK  366 (369)
T ss_dssp             HHHHHHHHHTTEE-CBCC--SC-TTEEEEE-CC---CHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCEE-EEEC--CC-CCeEEEE-eC---CHHHHHHHHHHHHHHHh
Confidence            3566777778743 4432  22 5799999 43   79999999999998764

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.94  E-value=7.8e-25  Score=216.82  Aligned_cols=301  Identities=16%  Similarity=0.139  Sum_probs=206.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG  191 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~  191 (480)
                      ....++++.+++++|.+  ..+++++||+|+..++.++..              ||+ .|+++..+|+++..++...|. 
T Consensus        90 ~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~~~~~~~~--------------~gd-~v~~~~~~~~~~~~~~~~~g~-  151 (401)
T 1fc4_A           90 DSHKELEQKLAAFLGME--DAILYSSCFDANGGLFETLLG--------------AED-AIISDALNHASIIDGVRLCKA-  151 (401)
T ss_dssp             HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHTTHHHHCC--------------TTC-EEEEETTCCHHHHHHHHTSCS-
T ss_pred             HHHHHHHHHHHHHhCCC--cEEEeCChHHHHHHHHHHHcC--------------CCC-EEEEcchhHHHHHHHHHHcCC-
Confidence            45567788899999997  356777789999988877643              445 788899999999998888887 


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccc-cc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLL-LS  270 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~-~~  270 (480)
                        +++.+|.     +|+++|++++++...++.++++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+.. ..
T Consensus       152 --~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~  224 (401)
T 1fc4_A          152 --KRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGEN  224 (401)
T ss_dssp             --EEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTT
T ss_pred             --ceEEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCC
Confidence              6777763     489999999987544443589999999999999999999999999999999999999974332 11


Q ss_pred             ccccCcccCCC-CCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCc
Q psy12303        271 KKYRHPRLTGI-ERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI  349 (480)
Q Consensus       271 ~~~~~~~~~~~-~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~  349 (480)
                      ... .+...++ .+.|+++.++||+++++.+ |+++. +++..........++...                   .....
T Consensus       225 g~~-~~~~~~~~~~~di~~~s~sK~~~~~~g-G~~~~-~~~~~~~l~~~~~~~~~~-------------------~~~~~  282 (401)
T 1fc4_A          225 GRG-SHEYCDVMGRVDIITGTLGKALGGASG-GYTAA-RKEVVEWLRQRSRPYLFS-------------------NSLAP  282 (401)
T ss_dssp             SCC-HHHHTTCTTCCSEEEEESSSTTCSSSC-EEEEE-CHHHHHHHHHHCHHHHHS-------------------CCCCH
T ss_pred             CCc-cHHHcCCCcCCcEEEecchhhccCCCC-EEEEc-CHHHHHHHHHhCcCceeC-------------------CCCCH
Confidence            110 0011122 2578999999999965665 77776 455554433222112110                   00122


Q ss_pred             hHHHHHHHHhcH-HHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHH
Q psy12303        350 FKLWLQWRAKGD-EGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPIL  428 (480)
Q Consensus       350 l~~~~~l~~~g~-~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i  428 (480)
                      +..++++..+.. +..++..++..++++++.+.|++ . +++++ ++....+.+.+ +..            .  ...++
T Consensus       283 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~~~~~~~~~-~~~------------~--~~~~l  344 (401)
T 1fc4_A          283 AIVAASIKVLEMVEAGSELRDRLWANARQFREQMSA-A-GFTLA-GADHAIIPVML-GDA------------V--VAQKF  344 (401)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH-T-TCCBC-CSSSSEEEEEE-ECH------------H--HHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-c-CCccc-CCCCCEEEEEc-CCh------------H--HHHHH
Confidence            333333332211 11367788899999999999999 5 88775 44555555543 211            0  02456


Q ss_pred             HHHHHhcccEEEeeeeeCC---cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        429 KGRMMQAGTMMVGYQPLND---LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       429 ~~~l~~~g~~~~~~~~~~~---~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+.|.++|+. +.+....+   ..+++|++ ++..++++++++++++|++++++
T Consensus       345 ~~~l~~~gi~-v~~~~~~~~~~~~~~iRi~-~~~~~~~~~i~~~~~~l~~~~~~  396 (401)
T 1fc4_A          345 ARELQKEGIY-VTGFFYPVVPKGQARIRTQ-MSAAHTPEQITRAVEAFTRIGKQ  396 (401)
T ss_dssp             HHHHHHTTEE-CCEECTTSSCTTCEEEEEE-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCcE-EeeecCCCCCCCCceEEEE-eCCCCCHHHHHHHHHHHHHHHHH
Confidence            7788888744 43332221   14689999 77788999999999999988765

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.94  E-value=1.2e-25  Score=224.31  Aligned_cols=317  Identities=12%  Similarity=0.068  Sum_probs=212.7

Q ss_pred             chhcChhhHHHHHHHHHHHHHHhC---CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCch
Q psy12303        103 TYEIAPVFILMETVVLEKMRQIIG---WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHY  179 (480)
Q Consensus       103 ~~~~~~~~~~~e~~~~~~la~~~g---~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~  179 (480)
                      .|....+..++++++.+++.+.+|   .++.++++|+|+|+|+..++.++.+              ||+ .|++..++|+
T Consensus        80 ~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~--------------~gd-~Vl~~~p~y~  144 (425)
T 1vp4_A           80 QYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLD--------------DES-YCVLDDPAYL  144 (425)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCC--------------TTC-EEEEEESCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCC--------------CCC-EEEEeCCCcH
Confidence            344444567888888888887779   5567899999999999999887743              445 7888889999


Q ss_pred             hHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHC--CCccEEE-EeccCCCccccccC---hHHHHHHHHHc
Q psy12303        180 SVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAK--GDIPFFV-NCTSGTTVLGAFDP---IEEIADICQKY  253 (480)
Q Consensus       180 s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~--~~~~~~v-~~~~~~~~~G~~~~---l~~I~~i~~~~  253 (480)
                      ++...+...|.   +++.+|.++++ +|+++|++++++..++  +.++++| ++++++|++|.+.|   +++|.++|++|
T Consensus       145 ~~~~~~~~~g~---~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~  220 (425)
T 1vp4_A          145 GAINAFRQYLA---NFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKY  220 (425)
T ss_dssp             HHHHHHHTTTC---EEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCC---EEEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHc
Confidence            99999998887   78888887665 9999999999873221  1238887 58999999999976   67899999999


Q ss_pred             CcEEEeeccccccccccccccCcccC--CCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccC
Q psy12303        254 NMWLHVDAAWGGGLLLSKKYRHPRLT--GIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYD  331 (480)
Q Consensus       254 ~~~l~vD~a~~~~~~~~~~~~~~~~~--~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  331 (480)
                      |+++|+|++|+.+........  .+.  +..+.++++.|++|+++.+..+|+++++ +++..........+..       
T Consensus       221 ~~~li~De~~~~~~~~g~~~~--~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~-------  290 (425)
T 1vp4_A          221 DLFIVEDDPYGALRYEGETVD--PIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGS-KEFIRKIVQAKQSADL-------  290 (425)
T ss_dssp             TCEEEEECSSTTCBCSSCCCC--CHHHHHCTTTEEEEEESTTTTCGGGCEEEEECC-HHHHHHHHHHHHHHHS-------
T ss_pred             CCEEEEECCCccccCCCCCCc--CHHHhCCCCCEEEEeccccccccccceEEEeeC-HHHHHHHHHHhhhhcC-------
Confidence            999999999998654221100  111  1124567788999999944568998875 4444433211111000       


Q ss_pred             cccCCCCccccCCCCCCchHHHHHHHHh--c--HHHHHHHHHHHHHHHHHHHHHHhcCCC---CeEEecCCceeEEEEEe
Q psy12303        332 VRYDTGDKVIQCGRHNDIFKLWLQWRAK--G--DEGFEKQIDRLMELAEYMVKKIKSMPD---KFYLILEPEMVNVSFWY  404 (480)
Q Consensus       332 ~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g--~~~~~~~~~~~~~l~~~l~~~l~~~~~---g~~~~~~~~~~~v~f~~  404 (480)
                                 +   ...+..+++...+  +  .+.+++..++..++++++.+.|++..|   +++++ .|..+.+++..
T Consensus       291 -----------~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~-~~~~g~~~~~~  355 (425)
T 1vp4_A          291 -----------C---SPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWV-KSEGGLFIWLT  355 (425)
T ss_dssp             -----------S---CCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEEC-CCSBSSEEEEE
T ss_pred             -----------C---CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEe-cCCccEEEEEE
Confidence                       0   1223333333333  2  345677778888899999999987224   68875 34444444333


Q ss_pred             ecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC---CcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        405 LPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN---DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       405 ~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~---~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+....              ..++.+.|.++|+.+.....+.   ...+++|+++. .. ++++|++++++|++++++
T Consensus       356 ~~~~~~--------------~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~-~~-~~e~i~~~l~~l~~~l~~  417 (425)
T 1vp4_A          356 LPEGFD--------------TWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFC-LP-PDEKIVEGIKRLREVVLE  417 (425)
T ss_dssp             CCTTCC--------------TTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECS-SS-CHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCC--------------HHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeC-CC-CHHHHHHHHHHHHHHHHH
Confidence            332211              1235567777775443322221   11479999944 33 899999999999987653

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.94  E-value=1.7e-25  Score=224.15  Aligned_cols=330  Identities=10%  Similarity=0.024  Sum_probs=215.2

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHH--HhcCchhHhcCCCccCCce-EEEecCC
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAAR--HKMFPTYKEKGLSAIKGQL-VMFTSDQ  176 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~--~~~~~~~~~~g~~~~~g~~-~vl~~~~  176 (480)
                      ..|....+..++++.+.+++.+.+|.  ++.++++|+|||+|+..++.++.  .              ||+. .|+++..
T Consensus        76 ~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~--------------~gd~~~Vl~~~p  141 (437)
T 3g0t_A           76 SIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTH--------------KNREYGTLFIDP  141 (437)
T ss_dssp             GSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSC--------------TTCSCCEEEEES
T ss_pred             cCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCC--------------CCCccEEEEeCC
Confidence            34544444578888888888888775  45789999999999999998875  3              3341 5777788


Q ss_pred             CchhHHHHHHHcCCCCCCeEEeeCCC-CCCCCHHHHHHHH-HHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHH
Q psy12303        177 CHYSVRSCAAVCGLGTDNCVEVPSDK-RGRLIPSELERLV-LERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQ  251 (480)
Q Consensus       177 ~h~s~~~~~~~~g~~~~~v~~v~~~~-~~~~d~~~L~~~i-~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~  251 (480)
                      +|.++..++...|.   +++.+|+++ ++.+|+++|++++ +++      +++|++++++|++|.+.+   +++|.++|+
T Consensus       142 ~~~~~~~~~~~~g~---~~~~v~~~~~~~~~d~~~l~~~l~~~~------~~~v~l~~p~nptG~~~~~~~l~~i~~~a~  212 (437)
T 3g0t_A          142 GFNLNKLQCRILGQ---KFESFDLFEYRGEKLREKLESYLQTGQ------FCSIIYSNPNNPTWQCMTDEELRIIGELAT  212 (437)
T ss_dssp             CCHHHHHHHHHHTC---CCEEEEGGGGCTTHHHHHHHHHHTTTC------CCEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             CcHhHHHHHHHcCC---EEEEEeecCCCCccCHHHHHHHHhcCC------ceEEEEeCCCCCCCCcCCHHHHHHHHHHHH
Confidence            99999999999998   788999864 4578999999999 333      889999999999999987   777899999


Q ss_pred             HcCcEEEeecccccccccccccc-------CcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhH-hhhcCCccc
Q psy12303        252 KYNMWLHVDAAWGGGLLLSKKYR-------HPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLI-SCNQMSAEY  322 (480)
Q Consensus       252 ~~~~~l~vD~a~~~~~~~~~~~~-------~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~-~~~~~~~~~  322 (480)
                      +||+++|+|++|+.+.......-       . .+.+..+.++++.|+||+++ .+.++|+++++ +.... ........+
T Consensus       213 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~~~~~~~~~~  290 (437)
T 3g0t_A          213 KHDVIVIEDLAYFGMDFRKDYSHPGEPLYQP-SVANYTDNYILALSSSKAFSYAGQRIGVLMIS-GKLYEREYPDLEESF  290 (437)
T ss_dssp             HTTCEEEEECTTTTCCTTSCCCSTTSSCCCC-CGGGTCSCEEEEEESTTTTSCGGGCCEEEEEC-HHHHHCBCGGGHHHH
T ss_pred             HCCcEEEEEcchhhcccCCCcCcccccchhh-ccCCCCCcEEEEEcCccCCCCccceeEEEEEC-HHHhhhhhhcccccc
Confidence            99999999999987654311000       1 11222356788889999998 44678988875 33433 200000000


Q ss_pred             ccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHH-----HHHHHHHHHHHHHHHHHHHhcCCCCeEEe-----
Q psy12303        323 LFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEG-----FEKQIDRLMELAEYMVKKIKSMPDKFYLI-----  392 (480)
Q Consensus       323 l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~-----~~~~~~~~~~l~~~l~~~l~~~~~g~~~~-----  392 (480)
                      ..... .+. .  ........+.....+..+++...+....     ++++.++..++++++.+.|++ . |++++     
T Consensus       291 ~~~~~-~~~-~--~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~  364 (437)
T 3g0t_A          291 GRLRF-GEA-L--SSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLD-N-GFNIVYDKDG  364 (437)
T ss_dssp             SCSBH-HHH-H--HTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT-T-TEEESSCEET
T ss_pred             cccch-hHH-H--HHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHH-c-CCEEeccccC
Confidence            00000 000 0  0000000000123334444444332222     788889999999999999999 5 99886     


Q ss_pred             -cCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCc-ccEEEEecccCCCCHHHHHHHH
Q psy12303        393 -LEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDL-PNFFRNIISSAAVTEGDIDFLL  470 (480)
Q Consensus       393 -~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~-~~~~R~~~~~~~~t~~di~~~~  470 (480)
                       .++..+.+++...+ ...              ..++.++|.++|+.+......... .+++|++ ++. .++++|++++
T Consensus       365 ~~~~~~~~~~~~~~~-~~~--------------~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis-~~~-~~~e~i~~~~  427 (437)
T 3g0t_A          365 NEPLADGFYFTVGYK-GMD--------------SSKLIEKFVRYGMCAITLKTTGSKRNEAMRIC-TSL-LPESQFPDLE  427 (437)
T ss_dssp             TEECCSSSEEEEEET-TCC--------------HHHHHHHHHHTTEECEESTTTTCCCTTCEEEE-CSS-SCGGGHHHHH
T ss_pred             CCCCceeEEEEEecC-CCC--------------HHHHHHHHHHcCeEEeeccccCCCCCCEEEEE-Eec-CCHHHHHHHH
Confidence             34244444443332 111              246778888888554432211111 2789999 543 3999999999


Q ss_pred             HHHHHhhcc
Q psy12303        471 TEMDRLGHD  479 (480)
Q Consensus       471 ~~l~~~~~~  479 (480)
                      ++|++++++
T Consensus       428 ~~l~~~~~~  436 (437)
T 3g0t_A          428 KRLQMLNAE  436 (437)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999988753

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.94  E-value=4.1e-25  Score=217.99  Aligned_cols=326  Identities=10%  Similarity=-0.021  Sum_probs=217.9

Q ss_pred             HHHHHHHHcCcCCcchhcChhhHH-HHHHHHHHHHHHhC--CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCcc
Q psy12303         89 AGEWLIATANTNMFTYEIAPVFIL-METVVLEKMRQIIG--WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAI  165 (480)
Q Consensus        89 ~~~~l~~~~~~~~~~~~~~~~~~~-~e~~~~~~la~~~g--~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~  165 (480)
                      +.+.+...++.....|...  ..+ +++++.+++.+.+|  .+++++++|+|+|+|+..++.++..              
T Consensus        46 v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~--------------  109 (390)
T 1d2f_A           46 IIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSE--------------  109 (390)
T ss_dssp             HHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSC--------------
T ss_pred             HHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhcC--------------
Confidence            3355555554333344332  566 88888888888888  5567899999999999999887643              


Q ss_pred             CCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCC---CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC
Q psy12303        166 KGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKR---GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP  242 (480)
Q Consensus       166 ~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~---~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~  242 (480)
                      ||+ .|++..++|+++..++...|.   +++.+|.+.+   +.+|+++|++++++.     ++++|++++++|++|.+.|
T Consensus       110 ~gd-~vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~l~~p~nptG~~~~  180 (390)
T 1d2f_A          110 TGE-GVVIHTPAYDAFYKAIEGNQR---TVMPVALEKQADGWFCDMGKLEAVLAKP-----ECKIMLLCSPQNPTGKVWT  180 (390)
T ss_dssp             TTC-EEEEEESCCHHHHHHHHHTTC---EEEEEECEECSSSEECCHHHHHHHHTST-----TEEEEEEESSCTTTCCCCC
T ss_pred             CCC-EEEEcCCCcHHHHHHHHHCCC---EEEEeecccCCCccccCHHHHHHHhccC-----CCeEEEEeCCCCCCCcCcC
Confidence            445 788888999999999999887   7888888643   358999999998641     2889999999999999977


Q ss_pred             ---hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCC-C-CccceeCccccCC-CcccceEEEEeCchhhHhhh
Q psy12303        243 ---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIE-R-ADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCN  316 (480)
Q Consensus       243 ---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~-~-~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~  316 (480)
                         +++|.++|++||+++|+|++|+.+........  .+..+. . .|. +.+++|+++ .+.++|+++++++.+.....
T Consensus       181 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~--~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~  257 (390)
T 1d2f_A          181 CDELEIMADLCERHGVRVISDEIHMDMVWGEQPHI--PWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYL  257 (390)
T ss_dssp             TTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCC--CGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCc--CHHHcchhhHhh-ccCccHhhcccChhheEEEECCHHHHHHHH
Confidence               89999999999999999999998754321111  111121 2 266 889999997 44568999987655544332


Q ss_pred             cCCc-ccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        317 QMSA-EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       317 ~~~~-~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                      .... .+-            ++      +  ...+..+++...+  +.+.+++..++..++++++.+.|++++|+++++ 
T Consensus       258 ~~~~~~~~------------~~------~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-  316 (390)
T 1d2f_A          258 SALKGRDG------------LS------S--PSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQ-  316 (390)
T ss_dssp             HHHHTTSC------------CC------S--CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCC-
T ss_pred             HHHhhhcc------------cC------C--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEe-
Confidence            1110 000            00      0  1223333332222  356678888889999999999998623788764 


Q ss_pred             CCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeC-CcccEEEEecccCCCCHHHHHHHHH
Q psy12303        394 EPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLN-DLPNFFRNIISSAAVTEGDIDFLLT  471 (480)
Q Consensus       394 ~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~-~~~~~~R~~~~~~~~t~~di~~~~~  471 (480)
                      ++..+.+++...+..  +.+           ..++.+.|. +.|+.+.....+. ...+++|+++..   ++++++++++
T Consensus       317 ~~~~~~~~~~~~~~~--~~~-----------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~---~~~~l~~~l~  380 (390)
T 1d2f_A          317 IPQSTYLAWLDLRPL--NID-----------DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC---PRSKLEKGVA  380 (390)
T ss_dssp             CCSBCSEEEEECGGG--CCC-----------HHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS---CHHHHHHHHH
T ss_pred             cCCccEEEEEEcccc--CCC-----------HHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC---CHHHHHHHHH
Confidence            455555543222211  000           235677787 5675443322221 114799999443   5899999999


Q ss_pred             HHHHhhcc
Q psy12303        472 EMDRLGHD  479 (480)
Q Consensus       472 ~l~~~~~~  479 (480)
                      .|++++++
T Consensus       381 ~l~~~l~~  388 (390)
T 1d2f_A          381 GLINAIRA  388 (390)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99987754

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.94  E-value=6.9e-25  Score=219.62  Aligned_cols=324  Identities=12%  Similarity=0.117  Sum_probs=215.4

Q ss_pred             hhcChhhHHHHHHHHHHHHHHhC----CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCch
Q psy12303        104 YEIAPVFILMETVVLEKMRQIIG----WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHY  179 (480)
Q Consensus       104 ~~~~~~~~~~e~~~~~~la~~~g----~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~  179 (480)
                      |....+..++++++.+++.+..|    +++.++++|+|||+||..++.++++              ||+ .|+++.+.|.
T Consensus        82 y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~--------------~gd-~vl~~~p~~~  146 (435)
T 3piu_A           82 FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLAD--------------PGE-AVLIPTPYYP  146 (435)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCC--------------TTC-EEEEEESCCT
T ss_pred             cCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcC--------------CCC-eEEECCCccc
Confidence            43344557888888888877665    4567899999999999999988754              445 7888889999


Q ss_pred             hHHHHHH-HcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHc
Q psy12303        180 SVRSCAA-VCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKY  253 (480)
Q Consensus       180 s~~~~~~-~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~  253 (480)
                      ++..++. ..|.   +++.+|.++  ++.+|+++|++++++....+.++++|++++++|++|.+.+   +++|.++|++|
T Consensus       147 ~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~  223 (435)
T 3piu_A          147 GFDRDLKWRTGV---EIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDK  223 (435)
T ss_dssp             THHHHTTTTTCC---EEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhcCC---EEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc
Confidence            9988777 5676   888999875  4679999999999987666667999999999999999966   58888899999


Q ss_pred             CcEEEeeccccccccccccccC--cccCC--C------CCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCccc
Q psy12303        254 NMWLHVDAAWGGGLLLSKKYRH--PRLTG--I------ERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEY  322 (480)
Q Consensus       254 ~~~l~vD~a~~~~~~~~~~~~~--~~~~~--~------~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~  322 (480)
                      |+++++|++|+++.+.......  .....  +      .+..+++.+++|+++ .+.++|+++..++.......... .+
T Consensus       224 ~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~-~~  302 (435)
T 3piu_A          224 GIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS-SF  302 (435)
T ss_dssp             TCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHG-GG
T ss_pred             CCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHh-hc
Confidence            9999999999886543221111  00000  0      122377889999998 44678999876665544322111 11


Q ss_pred             ccccccccCcccCCCCccccCCCCCCchHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEE
Q psy12303        323 LFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG--DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNV  400 (480)
Q Consensus       323 l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g--~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v  400 (480)
                      ..                   ........+...+....  .+.+++..++..++++++.+.|++ . |++++ ++..+.+
T Consensus       303 ~~-------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~~g~~  360 (435)
T 3piu_A          303 GL-------------------VSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK-S-GISCL-NGNAGLF  360 (435)
T ss_dssp             SC-------------------CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T-TCEEC-CCCSSSE
T ss_pred             CC-------------------CCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-CCccc-CCCeeEE
Confidence            00                   00011112222222211  234567778888999999999999 4 88875 4555444


Q ss_pred             EEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeee--CCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        401 SFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPL--NDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       401 ~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~--~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      ++...+......   ...     ...++.++|.++ |+.+.....+  .+ .+++|++ +... ++++|++++++|++++
T Consensus       361 ~~~~l~~~~~~~---~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~-~~~iRi~-~~~~-~~e~i~~~l~~l~~~l  429 (435)
T 3piu_A          361 CWVDMRHLLRSN---TFE-----AEMELWKKIVYEVHLNISPGSSCHCTE-PGWFRVC-FANL-PERTLDLAMQRLKAFV  429 (435)
T ss_dssp             EEEECGGGSSSS---SHH-----HHHHHHHHHHHTSCEECEEGGGGTCSS-TTEEEEE-CSSS-CHHHHHHHHHHHHHHH
T ss_pred             EEEEcccccccC---Cch-----hHHHHHHHHHHHCCEEEeCCcccCCCC-CCEEEEE-eeCC-CHHHHHHHHHHHHHHH
Confidence            443333221100   000     023567777777 7443332221  22 5799999 4433 8999999999999887


Q ss_pred             cc
Q psy12303        478 HD  479 (480)
Q Consensus       478 ~~  479 (480)
                      ++
T Consensus       430 ~~  431 (435)
T 3piu_A          430 GE  431 (435)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.94  E-value=4.3e-25  Score=220.67  Aligned_cols=316  Identities=11%  Similarity=0.104  Sum_probs=213.7

Q ss_pred             hhHHHHHHHHHHHHHHhC----CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH
Q psy12303        109 VFILMETVVLEKMRQIIG----WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC  184 (480)
Q Consensus       109 ~~~~~e~~~~~~la~~~g----~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~  184 (480)
                      +..++++.+.+++.+.+|    .++.++++|+|+|+++..++.++++              ||+ .|+++.++|.++...
T Consensus        84 g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~--------------~gd-~Vl~~~p~y~~~~~~  148 (428)
T 1iay_A           84 GLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLAD--------------PGD-AFLVPSPYYPAFNRD  148 (428)
T ss_dssp             CCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCC--------------TTC-EEEEESSCCTTHHHH
T ss_pred             CcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCC--------------CCC-eEEEccCCCcchHHH
Confidence            467888888888888777    5567899999999999999988753              455 788888899988765


Q ss_pred             HH-HcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCcEEE
Q psy12303        185 AA-VCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMWLH  258 (480)
Q Consensus       185 ~~-~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~  258 (480)
                      +. ..|.   +++.+|.+.  ++.+|+++|++++++....+.++++|++++++|++|.+.|   +++|.++|++||+++|
T Consensus       149 ~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li  225 (428)
T 1iay_A          149 LRWRTGV---QLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLV  225 (428)
T ss_dssp             TTTTTCC---EEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEE
T ss_pred             HHHhcCC---EEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEE
Confidence            43 4566   788888863  4579999999999876555556899999999999999999   9999999999999999


Q ss_pred             eeccccccccccccccC--cccC-----CCCCCc--cceeCccccCCCc-ccceEEEEeCchhhHhhhcCCccccccccc
Q psy12303        259 VDAAWGGGLLLSKKYRH--PRLT-----GIERAD--SVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDK  328 (480)
Q Consensus       259 vD~a~~~~~~~~~~~~~--~~~~-----~~~~~D--~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  328 (480)
                      +|++|+.+.+.......  ....     ++ +.|  +++.++||+++.| ..+|++++.++............+  .   
T Consensus       226 ~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~~--~---  299 (428)
T 1iay_A          226 CDEIYAATVFDTPQFVSIAEILDEQEMTYC-NKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFG--L---  299 (428)
T ss_dssp             EECTTGGGCCSSSCCCCHHHHHTSGGGTTS-CTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTS--C---
T ss_pred             EeccccccccCCCCccCHHHhccccccccC-CCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHhcc--c---
Confidence            99999986542111100  0111     11 257  6788999999743 567999876665554332110000  0   


Q ss_pred             ccCcccCCCCccccCCCCCCchHHHHHHHHhc-----HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEE
Q psy12303        329 LYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG-----DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFW  403 (480)
Q Consensus       329 ~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g-----~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~  403 (480)
                                        ...+...++...+.     .+.+++..++..++++++.+.|++ . +++++ ++..+++++.
T Consensus       300 ------------------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~~g~~~~~  358 (428)
T 1iay_A          300 ------------------VSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEV-V-GIKCL-KNNAGLFCWM  358 (428)
T ss_dssp             ------------------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCBC-CCSSSSEEEE
T ss_pred             ------------------CCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-CCccc-CCCeeEEEEE
Confidence                              12233333333332     235677888888999999999999 5 88764 4434444432


Q ss_pred             eecCccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeCCc-ccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        404 YLPTRVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPLNDL-PNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       404 ~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~~~-~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ..+.......   .     ....++.++|.++ |+.+.....+... .+++|++ ++ .++++++++++++|++++++
T Consensus       359 ~~~~~~~~~~---~-----~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis-~~-~~~~e~i~~~~~~l~~~l~~  426 (428)
T 1iay_A          359 DLRPLLREST---F-----DSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVC-FA-NMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             ECGGGCSSSS---H-----HHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEE-CS-SSCHHHHHHHHHHHHHHHHT
T ss_pred             echhhcCCCc---h-----hHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEE-Ee-cCCHHHHHHHHHHHHHHHhc
Confidence            2222110000   0     0123577888876 7544332222111 4699999 44 47999999999999988754

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.94  E-value=2.3e-26  Score=225.66  Aligned_cols=300  Identities=15%  Similarity=0.174  Sum_probs=200.6

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++.+++++|.+  .+++++|||+|+..++.++.-.             ||+ .|+++..+|+++..++...|.   +
T Consensus        39 ~~l~~~la~~~~~~--~~i~~~sgt~al~~~l~~l~~~-------------~gd-~Vi~~~~~~~~~~~~~~~~g~---~   99 (373)
T 3frk_A           39 KKFEQEFADYCNVN--YCIGCGNGLDALHLILKGYDIG-------------FGD-EVIVPSNTFIATALAVSYTGA---K   99 (373)
T ss_dssp             HHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHTTCC-------------TTC-EEEEETTSCTHHHHHHHHHSC---E
T ss_pred             HHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcCCC-------------CcC-EEEECCCCcHHHHHHHHHcCC---E
Confidence            34556688888886  5999999999999999876211             445 889999999999999999998   8


Q ss_pred             eEEeeCC-CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccc
Q psy12303        195 CVEVPSD-KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       195 v~~v~~~-~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~  273 (480)
                      ++.++++ +++.+|+++|+++++++      +++|+   ++|++|.+.|+++|.++|+++|+++|+|++|+.+... +..
T Consensus       100 ~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~-~~~  169 (373)
T 3frk_A          100 PIFVEPDIRTYNIDPSLIESAITEK------TKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLY-KGM  169 (373)
T ss_dssp             EEEECEETTTTEECGGGTGGGCCTT------EEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEE-TTE
T ss_pred             EEEEeccccccCcCHHHHHHhcCCC------CeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEE-CCE
Confidence            8899987 56889999999998764      88887   5568999999999999999999999999999976652 211


Q ss_pred             cCcccCCCCCCccceeC--ccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchH
Q psy12303        274 RHPRLTGIERADSVTWN--PHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFK  351 (480)
Q Consensus       274 ~~~~~~~~~~~D~~~~s--~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~  351 (480)
                      ..    +. ..|++++|  .||+++++...|+++.++...............   ..    .+...    ..+.++....
T Consensus       170 ~~----~~-~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~---~~----~~~~~----~~g~~~~~~~  233 (373)
T 3frk_A          170 KV----GS-LGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGS---EK----KYHHI----YKGFNSRLDE  233 (373)
T ss_dssp             ET----TS-SSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTC---SB----TTBCC----SCCCBCCCCH
T ss_pred             ec----cc-cccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCc---cc----CCccc----cccccCCCCH
Confidence            11    11 36787777  669998634466666665544433221110000   00    00000    0111122233


Q ss_pred             HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeE---EEEEeecCccCCCchhhHHHHhhhhhHHH
Q psy12303        352 LWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVN---VSFWYLPTRVRNMPHEKRLNILGEITPIL  428 (480)
Q Consensus       352 ~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~---v~f~~~~~~~~~~~~~~~~~~l~~~~~~i  428 (480)
                      +.+++.....+++++..++..++++++.+.|.+ .+ +++...+....   +.|......                ..++
T Consensus       234 ~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~----------------~~~l  295 (373)
T 3frk_A          234 LQAGFLRVKLKYLDKWNEERRKIAQKYIAGINN-PN-VIIPVEADYAKHVWYTFVIRSEK----------------RDEL  295 (373)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCC-TT-EECCCCCTTEECCCSSEEEEESS----------------HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-Cc-eEeccCCCCCceeeEEEEEEeCC----------------HHHH
Confidence            333443334567788889999999999999998 66 76643332111   112111110                2456


Q ss_pred             HHHHHhcccEEEeee--eeC-------------Cc-------ccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        429 KGRMMQAGTMMVGYQ--PLN-------------DL-------PNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       429 ~~~l~~~g~~~~~~~--~~~-------------~~-------~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .+.|.++|+.+....  +..             ..       ...+|++ +++.+|++||++++++|++...
T Consensus       296 ~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~-~~~~~t~~di~~~~~~l~~~~~  366 (373)
T 3frk_A          296 QKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIP-IWYGMKNEEIEYVIDKINAWKL  366 (373)
T ss_dssp             HHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEEC-CCTTCCHHHHHHHHHHHHTCC-
T ss_pred             HHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEcc-CCCCCCHHHHHHHHHHHHHHhh
Confidence            788888885432111  000             00       1689999 9999999999999999998754

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.94  E-value=2.2e-25  Score=222.61  Aligned_cols=314  Identities=12%  Similarity=0.050  Sum_probs=211.0

Q ss_pred             chhcChhhHHHHHHHHHHHHHHhC-----CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCC
Q psy12303        103 TYEIAPVFILMETVVLEKMRQIIG-----WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQC  177 (480)
Q Consensus       103 ~~~~~~~~~~~e~~~~~~la~~~g-----~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~  177 (480)
                      .|....+..+++    +.++++++     .++.++++|+|||+|+..++.++++              ||+ .|+++.++
T Consensus        91 ~y~~~~g~~~lr----~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~~--------------~gd-~vl~~~p~  151 (427)
T 3dyd_A           91 GYAPSIGFLSSR----EEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLAN--------------PGQ-NILVPRPG  151 (427)
T ss_dssp             SCCCTTCCHHHH----HHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHCC--------------TTC-EEEEEESC
T ss_pred             CCCCCCCcHHHH----HHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhcC--------------CCC-EEEEcCCC
Confidence            444444444544    44666666     5567899999999999999988753              445 78888899


Q ss_pred             chhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHH
Q psy12303        178 HYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQK  252 (480)
Q Consensus       178 h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~  252 (480)
                      |..+...+...|.   +++.+|.++  ++.+|+++|++++++.      +++|++++++|++|.+.|   +++|.++|++
T Consensus       152 ~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~  222 (427)
T 3dyd_A          152 FSLYKTLAESMGI---EVKLYNLLPEKSWEIDLKQLEYLIDEK------TACLIVNNPSNPCGSVFSKRHLQKILAVAAR  222 (427)
T ss_dssp             CTHHHHHHHHTTC---EEEEEEEEGGGTTEECHHHHHSSCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHcCC---EEEEEecccccCCCCCHHHHHHHhccC------CCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999998   788888763  5689999999998764      889999999999999999   9999999999


Q ss_pred             cCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCc------hhhHhhhcCCcccccc
Q psy12303        253 YNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQD------GLLISCNQMSAEYLFM  325 (480)
Q Consensus       253 ~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~------~~~~~~~~~~~~~l~~  325 (480)
                      +|+++++|++|+++.............+.....+++.|++|.++.| .++|++++++.      .+............  
T Consensus       223 ~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~~~--  300 (427)
T 3dyd_A          223 QCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRIL--  300 (427)
T ss_dssp             TTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHHC--
T ss_pred             CCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHhccC--
Confidence            9999999999998764322111000111111124566999986544 67899998864      22222111000000  


Q ss_pred             cccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEee
Q psy12303        326 QDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYL  405 (480)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~  405 (480)
                                       ........++...+.....+.++++.++..++++++.+.|++ +|+++++ .|..+++++...
T Consensus       301 -----------------~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~-~p~~g~~~~~~l  361 (427)
T 3dyd_A          301 -----------------GPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAA-IPGLRPV-RPSGAMYLMVGI  361 (427)
T ss_dssp             -----------------CSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-STTEEEE-CCSBTTEEEEEE
T ss_pred             -----------------CCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc-CCCceec-CCCeeEEEEEec
Confidence                             000012223334444445677888999999999999999999 8999875 455555554322


Q ss_pred             cC-ccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        406 PT-RVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       406 ~~-~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +. .....        .  ...++.++|. +.|+++.....+.. .+++|+++ .  +++++|++++++|++++++
T Consensus       362 ~~~~~~~~--------~--~~~~~~~~l~~~~gV~v~~g~~~~~-~~~iRis~-~--~~~e~i~~~l~~l~~~l~~  423 (427)
T 3dyd_A          362 EMEHFPEF--------E--NDVEFTERLVAEQSVHCLPATCFEY-PNFIRVVI-T--VPEVMMLEACSRIQEFCEQ  423 (427)
T ss_dssp             CGGGCTTC--------S--SHHHHHHHHHHHHCEECEEGGGGTC-TTEEEEES-C--SCHHHHHHHHHHHHHHHHH
T ss_pred             CHhhcCCC--------C--CHHHHHHHHHHHCCEEEECCcccCC-CCeEEEEE-C--CCHHHHHHHHHHHHHHHHH
Confidence            21 11000        0  0235566665 56644443322323 68999994 3  6899999999999988754

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.94  E-value=4.6e-25  Score=218.69  Aligned_cols=325  Identities=7%  Similarity=-0.024  Sum_probs=218.7

Q ss_pred             HHHHHHHHcCcC-CcchhcChhhHHHHHHHHHHHHHHhCCC---CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCc
Q psy12303         89 AGEWLIATANTN-MFTYEIAPVFILMETVVLEKMRQIIGWQ---GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSA  164 (480)
Q Consensus        89 ~~~~l~~~~~~~-~~~~~~~~~~~~~e~~~~~~la~~~g~~---~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~  164 (480)
                      +.+.+...+... ...|...+...++++.+.+++.+.+|.+   ..++++|+|+|+|+..++.++..             
T Consensus        65 v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~-------------  131 (404)
T 2o1b_A           65 IIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVIN-------------  131 (404)
T ss_dssp             HHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCC-------------
T ss_pred             HHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcC-------------
Confidence            335555544321 2234333456788888888888888975   36899999999999999988743             


Q ss_pred             cCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC-
Q psy12303        165 IKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP-  242 (480)
Q Consensus       165 ~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~-  242 (480)
                       ||+ .|+++.++|+++..++...|.   +++.+|.++ ++.+|+++|++++++.      +++|++++++|++|.+.| 
T Consensus       132 -~gd-~Vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~p~nptG~~~~~  200 (404)
T 2o1b_A          132 -PGD-YVLLPDPGYTDYLAGVLLADG---KPVPLNLEPPHYLPDWSKVDSQIIDK------TKLIYLTYPNNPTGSTATK  200 (404)
T ss_dssp             -TTC-EEEEEESCCSSHHHHHHHTTC---EEEEEECCTTTCCCCGGGSCHHHHHH------EEEEEECSSCTTTCCCCCH
T ss_pred             -CCC-EEEEcCCCchhHHHHHHHCCC---EEEEeccCcccCcCCHHHHHHhhccC------ceEEEEcCCCCCCCccCCH
Confidence             445 788888899999999998887   788899876 4568999999999765      899999999999999975 


Q ss_pred             --hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCC
Q psy12303        243 --IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMS  319 (480)
Q Consensus       243 --l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~  319 (480)
                        +++|.++|++||+++++|++|+.+.........-.+.+..+.++++.|+||+++.| .++|+++. ++++........
T Consensus       201 ~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~  279 (404)
T 2o1b_A          201 EVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVG-NKDMIQALKKYQ  279 (404)
T ss_dssp             HHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEE-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEec-CHHHHHHHHHHH
Confidence              78899999999999999999998654221000001111114567888999999744 56898876 444444332111


Q ss_pred             cccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCce
Q psy12303        320 AEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEM  397 (480)
Q Consensus       320 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~  397 (480)
                      ..+..                   +  ...+..+++...+  +.+.+++..++..++++++.+.|++ . ++++. ++..
T Consensus       280 ~~~~~-------------------~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~~  335 (404)
T 2o1b_A          280 THTNA-------------------G--MFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAK-A-DLPFV-HAKG  335 (404)
T ss_dssp             HHHCC-------------------C--CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCEE-CCCB
T ss_pred             hhccC-------------------C--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh-c-CCeec-CCCc
Confidence            00000                   0  1222333333332  3566788888899999999999999 5 88875 4555


Q ss_pred             eEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        398 VNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       398 ~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                      +.+++...+....              ..++.++|. +.|+.+.....+.. ..+++|+++. .  ++++|+++++.|++
T Consensus       336 g~~~~~~~~~~~~--------------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~-~--~~e~l~~~l~~l~~  398 (404)
T 2o1b_A          336 GIYVWLETPPGYD--------------SEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLA-L--DDQKLDEAAIRLTE  398 (404)
T ss_dssp             SSEEEEECCTTCC--------------HHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECC-S--CTTHHHHHHHHHHG
T ss_pred             ceEEEEeCCCCCC--------------HHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEc-C--CHHHHHHHHHHHHH
Confidence            5544322222111              235667766 45744433221211 1479999943 3  68899999999999


Q ss_pred             hhcc
Q psy12303        476 LGHD  479 (480)
Q Consensus       476 ~~~~  479 (480)
                      ++++
T Consensus       399 ~l~~  402 (404)
T 2o1b_A          399 LAYL  402 (404)
T ss_dssp             GGGG
T ss_pred             HHHh
Confidence            8765

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.94  E-value=6.3e-25  Score=214.67  Aligned_cols=289  Identities=16%  Similarity=0.117  Sum_probs=207.4

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCe
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNC  195 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v  195 (480)
                      ++++.+++++|+++.++++|+|+|+|+..++.++.+              ||+ .|+++..+|.++...+...|.   ++
T Consensus        69 ~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~~--------------~gd-~vl~~~~~~~~~~~~~~~~g~---~~  130 (365)
T 3get_A           69 ELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKLN--------------SKN-AFLQAGVTFAMYEIYAKQCGA---KC  130 (365)
T ss_dssp             HHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCC--------------TTC-EEEECSSCCTHHHHHHHHHTC---EE
T ss_pred             HHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHhC--------------CCC-EEEEeCCChHHHHHHHHHcCC---EE
Confidence            567778899999878999999999999999887743              445 788999999999999999998   88


Q ss_pred             EEeeC-CCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHH--HcCcEEEeecccccccc--cc
Q psy12303        196 VEVPS-DKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQ--KYNMWLHVDAAWGGGLL--LS  270 (480)
Q Consensus       196 ~~v~~-~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~--~~~~~l~vD~a~~~~~~--~~  270 (480)
                      +.+|+ ++++ +|+++|+++++++      +++|++++++|++|.+.|++++.++++  ++|+++++|++|+.+.+  ..
T Consensus       131 ~~v~~~~~~~-~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~  203 (365)
T 3get_A          131 YKTQSITHNL-DEFKKLYETHKDE------IKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDS  203 (365)
T ss_dssp             EECSSSSCCH-HHHHHHHHHTTTT------EEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCG
T ss_pred             EEEecCCCCC-CCHHHHHHHhCCC------CCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCC
Confidence            89998 6678 9999999999754      899999999999999999999999988  77999999999996652  11


Q ss_pred             ccccCc-ccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCC
Q psy12303        271 KKYRHP-RLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHND  348 (480)
Q Consensus       271 ~~~~~~-~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~  348 (480)
                      .....+ ...+..+.++++.|+||+++ .+.++|++++ +++...........|-                       ..
T Consensus       204 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~-----------------------~~  259 (365)
T 3get_A          204 KKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIA-NANIISAFYKLRAPFN-----------------------VS  259 (365)
T ss_dssp             GGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEE-CHHHHHHHHHHSCTTC-----------------------SC
T ss_pred             cccccHhHHhccCCCEEEEeecchHhcCcchheEEEEc-CHHHHHHHHHhcCCCC-----------------------cC
Confidence            110000 00011145678889999997 4467898887 5555444322111110                       12


Q ss_pred             chHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHH
Q psy12303        349 IFKLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPI  427 (480)
Q Consensus       349 ~l~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~  427 (480)
                      .+..++....+ ..+.+++..++..++++++.+.|++ . ++++. ++....+.+.+ +.. .              ..+
T Consensus       260 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~-~~~~~~~~~~~-~~~-~--------------~~~  320 (365)
T 3get_A          260 NLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKK-H-NIKII-DSYTNFITYFF-DEK-N--------------STD  320 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEC-CCSSSEEEEEC-SSS-C--------------HHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh-C-CCEEC-CCCCeEEEEEC-CCC-C--------------HHH
Confidence            23333333333 2466788889999999999999999 5 88874 45554444432 211 1              245


Q ss_pred             HHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        428 LKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       428 i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      +.+.|.++|+ .+.++...+ .+++|+++ +   +++|++++++.|+++++
T Consensus       321 ~~~~l~~~gi-~v~~g~~~~-~~~iRis~-~---~~~~i~~l~~~l~~~l~  365 (365)
T 3get_A          321 LSEKLLKKGI-IIRNLKSYG-LNAIRITI-G---TSYENEKFFTEFDKILR  365 (365)
T ss_dssp             HHHHHHTTTE-ECEECGGGT-CSEEEEEC-C---CHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCE-EEEECccCC-CCEEEEEc-C---CHHHHHHHHHHHHHHhC
Confidence            6778888874 444433333 57999994 3   89999999999998753

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.94  E-value=4.2e-25  Score=217.56  Aligned_cols=309  Identities=15%  Similarity=0.126  Sum_probs=213.7

Q ss_pred             chhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchh
Q psy12303        103 TYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS  180 (480)
Q Consensus       103 ~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s  180 (480)
                      .|....+..++.+++.+++.+..|.  +++++++|+|||+|+..++.++.+              ||+ .|+++.++|++
T Consensus        63 ~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~--------------~gd-~Vlv~~p~y~~  127 (385)
T 1b5p_A           63 KYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILD--------------PGD-EVIVLSPYWVS  127 (385)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCC--------------TTC-EEEEEESCCTH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcC--------------CCC-EEEEcCCCchh
Confidence            4544445678888888999888785  456899999999999999987743              556 78888899999


Q ss_pred             HHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCc
Q psy12303        181 VRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNM  255 (480)
Q Consensus       181 ~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~  255 (480)
                      +...++..|.   +++.+|.++  ++.+|+++|++++++.      +++|++++++||||.+.+   +++|.++|++||+
T Consensus       128 ~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~  198 (385)
T 1b5p_A          128 YPEMVRFAGG---VVVEVETLPEEGFVPDPERVRRAITPR------TKALVVNSPNNPTGAVYPKEVLEALARLAVEHDF  198 (385)
T ss_dssp             HHHHHHHTTC---EEEEEECCGGGTTCCCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCC---EEEEeecCcccCCCCCHHHHHHhcCCC------CEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCC
Confidence            9999999988   889999874  5689999999988654      889999999999999866   8999999999999


Q ss_pred             EEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCccc
Q psy12303        256 WLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRY  334 (480)
Q Consensus       256 ~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  334 (480)
                      ++++|++|+.+....+....-.+..  +.++++.+++|+++.| ..+|+++++ +.+..........+.           
T Consensus       199 ~li~De~~~~~~~~~~~~~~~~~~~--~~~i~~~s~SK~~~~~G~RiG~~~~~-~~~~~~l~~~~~~~~-----------  264 (385)
T 1b5p_A          199 YLVSDEIYEHLLYEGEHFSPGRVAP--EHTLTVNGAAKAFAMTGWRIGYACGP-KEVIKAMASVSRQST-----------  264 (385)
T ss_dssp             EEEEECTTTTCBSSSCCCCGGGTCT--TTEEEEEESTTTTTCGGGCCEEEECC-HHHHHHHHHHHHTTT-----------
T ss_pred             EEEEEccchhcccCCCCCCHHHcCC--CCEEEEEechhhcCCcccceEEEEeC-HHHHHHHHHHHhhcc-----------
Confidence            9999999997654211100001111  4467788999999854 458998864 444433221100000           


Q ss_pred             CCCCccccCCCCCCchHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCcc
Q psy12303        335 DTGDKVIQCGRHNDIFKLWLQWRAK-----GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRV  409 (480)
Q Consensus       335 ~~~~~~~~~~r~~~~l~~~~~l~~~-----g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~  409 (480)
                                .....+..+++...+     +.+.+++..++..++++++.+.|++ + |+++. +|..+.+.+...+.. 
T Consensus       265 ----------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~~~~~~~~~~~~~-  330 (385)
T 1b5p_A          265 ----------TSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTA-L-GLKAV-RPSGAFYVLMDTSPI-  330 (385)
T ss_dssp             ----------CSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBC-CCSBTTEEEEECTTT-
T ss_pred             ----------CCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH-C-CCeec-CCCeeEEEEEecCCC-
Confidence                      001223333333332     3456777888889999999999999 6 88764 455554444322210 


Q ss_pred             CCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        410 RNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       410 ~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                       +.+           ..++.+.|.+.|+.+.....+ +..+++|+++.   +++++|+++++.|++++++
T Consensus       331 -~~~-----------~~~l~~~l~~~gv~v~~g~~f-~~~~~iRis~~---~~~~~i~~~l~~l~~~l~~  384 (385)
T 1b5p_A          331 -APD-----------EVRAAERLLEAGVAVVPGTDF-AAFGHVRLSYA---TSEENLRKALERFARVLGR  384 (385)
T ss_dssp             -CSS-----------HHHHHHHHHHTTEECEESGGG-TCTTEEEEECC---SCHHHHHHHHHHGGGGC--
T ss_pred             -CCC-----------HHHHHHHHHHCCeEEeccccc-CCCCeEEEEec---CCHHHHHHHHHHHHHHHhh
Confidence             111           245677777777544433222 22579999943   7899999999999887653

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.94  E-value=1.5e-24  Score=212.80  Aligned_cols=322  Identities=13%  Similarity=0.063  Sum_probs=216.1

Q ss_pred             HHHHHHHHcCcC-CcchhcChhhHHHHHHHHHHHHHHhCCC--CC-CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCc
Q psy12303         89 AGEWLIATANTN-MFTYEIAPVFILMETVVLEKMRQIIGWQ--GG-DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSA  164 (480)
Q Consensus        89 ~~~~l~~~~~~~-~~~~~~~~~~~~~e~~~~~~la~~~g~~--~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~  164 (480)
                      +.+.+...+... ...|...+...++++.+.+++.+.+|.+  +. ++++|+|+|+|+..++.++.+             
T Consensus        43 v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~~-------------  109 (376)
T 2dou_A           43 PLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTE-------------  109 (376)
T ss_dssp             HHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHCC-------------
T ss_pred             HHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhcC-------------
Confidence            335555554321 2334333456678888888887777985  34 899999999999999987743             


Q ss_pred             cCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC--
Q psy12303        165 IKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP--  242 (480)
Q Consensus       165 ~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~--  242 (480)
                       ||+ .|++..++|+++...+...|.   +++.+|.++++.+|+++|++++++.      +++|++++++|++|.+.|  
T Consensus       110 -~gd-~vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~p~nptG~~~~~~  178 (376)
T 2dou_A          110 -PED-LLLLPEVAYPSYFGAARVASL---RTFLIPLREDGLADLKAVPEGVWRE------AKVLLLNYPNNPTGAVADWG  178 (376)
T ss_dssp             -TTC-EEEEESSCCHHHHHHHHHTTC---EEEEECBCTTSSBCGGGSCHHHHHH------EEEEEECSSCTTTCCCCCHH
T ss_pred             -CCC-EEEECCCCcHhHHHHHHHcCC---EEEEeeCCCCCCCCHHHHHHhhccC------ceEEEECCCCCCcCccCCHH
Confidence             445 788888999999999999887   7888888545678999999999765      899999999999999976  


Q ss_pred             -hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCc
Q psy12303        243 -IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSA  320 (480)
Q Consensus       243 -l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~  320 (480)
                       +++|.++|++||+++|+|++|+.+.........-...+..+.++++.+++|+++.| .++|+++. +++..........
T Consensus       179 ~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~  257 (376)
T 2dou_A          179 YFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALG-SEEALARLERVKG  257 (376)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEE-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEec-CHHHHHHHHHHHH
Confidence             68899999999999999999998764221100001111124567888999999743 56888875 4444443321111


Q ss_pred             ccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCcee
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMV  398 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~  398 (480)
                      .+..                   +  ...+...++...+  +.+.+++..++..++++++.+.|++ .  +++. ++..+
T Consensus       258 ~~~~-------------------~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~--~~~~-~~~~~  312 (376)
T 2dou_A          258 VIDF-------------------N--QYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKG-V--LSLL-PPRAT  312 (376)
T ss_dssp             HHCC-------------------C--SCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTT-T--SEEC-CCCBS
T ss_pred             hccc-------------------C--CCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-h--cCcc-CCCee
Confidence            0000                   0  1122223333333  3567788888999999999999999 5  7764 45555


Q ss_pred             EEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        399 NVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       399 ~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      .+++...+....              ..++.+.|.++|+.+.....+.. ..+++|+++ +.  ++++|+++++.|++++
T Consensus       313 ~~~~~~~~~~~~--------------~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~-~~--~~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          313 MYLWGRLPEGVD--------------DLEFGLRLVERGVALAPGRGFGPGGKGFVRIAL-VR--PLEELLEAAKRIREAL  375 (376)
T ss_dssp             SEEEEECCTTCC--------------HHHHHHHHHHTTEECEEGGGGCGGGTTEEEEEC-CS--CHHHHHHHHHHHHHTC
T ss_pred             EEEEEECCCCCC--------------HHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEe-cC--CHHHHHHHHHHHHHHh
Confidence            544322222111              23567788888754433222211 147999994 33  7999999999998865

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.94  E-value=7.4e-25  Score=216.25  Aligned_cols=323  Identities=14%  Similarity=0.104  Sum_probs=216.3

Q ss_pred             hHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCC
Q psy12303         85 VVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGL  162 (480)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~  162 (480)
                      ++.+. +.+...+......|....+..++++++.+++.+.+|.  ++.++++|+|||+|+..++.++..           
T Consensus        46 ~~~v~-~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~-----------  113 (391)
T 3h14_A           46 PRGAV-EALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFD-----------  113 (391)
T ss_dssp             CHHHH-HHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCC-----------
T ss_pred             CHHHH-HHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcC-----------
Confidence            34343 5555555443445555555678888989999888884  567899999999999999888753           


Q ss_pred             CccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCC--CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccc
Q psy12303        163 SAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKR--GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAF  240 (480)
Q Consensus       163 ~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~--~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~  240 (480)
                         ||+ .|+++.++|.++...+..+|.   +++.+|.+++  +.+|+++|+++   +      +++|++++++|++|.+
T Consensus       114 ---~gd-~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~---~------~~~v~i~~p~nptG~~  177 (391)
T 3h14_A          114 ---SGD-RVGIGAPGYPSYRQILRALGL---VPVDLPTAPENRLQPVPADFAGL---D------LAGLMVASPANPTGTM  177 (391)
T ss_dssp             ---TTC-EEEEEESCCHHHHHHHHHTTC---EEEEEECCGGGTTSCCHHHHTTS---C------CSEEEEESSCTTTCCC
T ss_pred             ---CCC-EEEEcCCCCccHHHHHHHcCC---EEEEeecCcccCCCCCHHHHHhc---C------CeEEEECCCCCCCCcc
Confidence               445 788888999999999999988   8889998764  57899999876   2      7899999999999999


Q ss_pred             cC---hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhh
Q psy12303        241 DP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCN  316 (480)
Q Consensus       241 ~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~  316 (480)
                      .|   +++|.++|++||+++|+|++|+.+.......   ........++++.+++|+++ .+.++|+++.++ .......
T Consensus       178 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~---~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-~~~~~~~  253 (391)
T 3h14_A          178 LDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAV---TALELTDECYVINSFSKYFSMTGWRVGWMVVPE-DQVRVVE  253 (391)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCC---CGGGTCSSSEEEEESSSTTCCTTSCCEEEECCG-GGHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCc---ChhhcCCCEEEEEechhccCCccceeEEEEeCH-HHHHHHH
Confidence            87   8899999999999999999999766432211   11112245677779999997 556788888654 3333321


Q ss_pred             cCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC
Q psy12303        317 QMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP  395 (480)
Q Consensus       317 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~  395 (480)
                      .....+.                     .....+..++++..+ +.+.+++..++..++++++.+.|++ . ++..+.+|
T Consensus       254 ~~~~~~~---------------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~-~~~~~~~~  310 (391)
T 3h14_A          254 RIAQNMF---------------------ICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPK-A-GFTRIAPP  310 (391)
T ss_dssp             HHHHHTT---------------------CCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH-H-TCCCBCCC
T ss_pred             HHHhhhc---------------------cCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH-c-CCCcccCC
Confidence            1100000                     001223333332222 5677888899999999999999998 5 54443456


Q ss_pred             ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeCC---cccEEEEecccCCCCHHHHHHHHH
Q psy12303        396 EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPLND---LPNFFRNIISSAAVTEGDIDFLLT  471 (480)
Q Consensus       396 ~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~~---~~~~~R~~~~~~~~t~~di~~~~~  471 (480)
                      ..+.+.+...+..  +.+           ..++.++|.++ |+. +.++...+   ..+++|+++. .  ++++|+++++
T Consensus       311 ~~~~~~~~~~~~~--~~~-----------~~~~~~~l~~~~gi~-v~~g~~~~~~~~~~~iRis~~-~--~~~~i~~~l~  373 (391)
T 3h14_A          311 DGAFYVYADVSDL--TDD-----------SRAFAAEILEKAGVA-VTPGLDFDPERGAGTLRFSYA-R--ATADIEEGLD  373 (391)
T ss_dssp             CBTTEEEEECTTT--CSC-----------HHHHHHHHHHHHCEE-CEEGGGTCTTTGGGEEEEECC-S--CHHHHHHHHH
T ss_pred             CeeEEEEEecCcc--CCC-----------HHHHHHHHHHHCCEE-EcCchhhCCCCCCCeEEEEec-C--CHHHHHHHHH
Confidence            6555544333221  000           23566777665 744 44322222   1579999943 3  7899999999


Q ss_pred             HHHHhhcc
Q psy12303        472 EMDRLGHD  479 (480)
Q Consensus       472 ~l~~~~~~  479 (480)
                      +|++++++
T Consensus       374 ~l~~~~~~  381 (391)
T 3h14_A          374 RLEAFMQA  381 (391)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988754

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.94  E-value=1.5e-26  Score=225.51  Aligned_cols=340  Identities=11%  Similarity=-0.020  Sum_probs=215.1

Q ss_pred             CccccccCCCChHHhHHHHHHHHcC--cCC-cc---hhcChhhHHHHHHHHHHHHHHhCCCC-CCeEE-CCChhHHHHHH
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIATAN--TNM-FT---YEIAPVFILMETVVLEKMRQIIGWQG-GDSIL-APGGSISNLYA  145 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~--~~~-~~---~~~~~~~~~~e~~~~~~la~~~g~~~-~~~~~-t~ggt~a~~~a  145 (480)
                      .|+.+..+.+.++.++..+...+.+  .++ ..   ...++.+.++.+++++.+++++|+++ .+++| |+|||+|+..+
T Consensus        28 ~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a  107 (386)
T 3qm2_A           28 VFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGV  107 (386)
T ss_dssp             CEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHH
T ss_pred             CccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHH
Confidence            5666666666777776443322211  111 11   11234455666788999999999965 46888 69999999999


Q ss_pred             HHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCC--CCCC-CCHHHHHHHHHHHHHCC
Q psy12303        146 FLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD--KRGR-LIPSELERLVLERKAKG  222 (480)
Q Consensus       146 l~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~--~~~~-~d~~~L~~~i~~~~~~~  222 (480)
                      +.....              +|+ .+++....|++.. ....+...+ ++..+|++  ++|. +++++++++++++    
T Consensus       108 i~~l~~--------------~gd-~v~~~~~~~~~~~-~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~----  166 (386)
T 3qm2_A          108 PLNLLG--------------DKT-TADYVDAGYWAAS-AIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDN----  166 (386)
T ss_dssp             HHHHCT--------------TCC-EEEEEESSHHHHH-HHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTT----
T ss_pred             HHhccC--------------CCC-eEEEEeCCHHHHH-HHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCC----
Confidence            876632              345 3333333555542 233332223 58888888  5665 7888888777665    


Q ss_pred             CccEEEEeccCCCccccc-cChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccc
Q psy12303        223 DIPFFVNCTSGTTVLGAF-DPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQC  301 (480)
Q Consensus       223 ~~~~~v~~~~~~~~~G~~-~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~  301 (480)
                        |++|.+++.+|.+|.+ .|+++|.     +|+++|||++++.+..+++..++       +  ++++++|||++ |.|+
T Consensus       167 --t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~-------~--~~~~s~hK~lG-P~G~  229 (386)
T 3qm2_A          167 --AAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRY-------G--VIYAGAQKNIG-PAGL  229 (386)
T ss_dssp             --CSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGC-------S--EEEEETTTTTC-CTTE
T ss_pred             --CcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCcccc-------C--EEEEecccccC-CCcc
Confidence              8899999999999995 9999986     89999999999999998887655       4  56688999996 9999


Q ss_pred             eEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHH
Q psy12303        302 STIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDE-GFEKQIDRLMELAEYMVK  380 (480)
Q Consensus       302 g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~-~~~~~~~~~~~l~~~l~~  380 (480)
                      |+++++++. +.......+.++...... .....+++..     -....++..+++.+... |++++.++..++++++.+
T Consensus       230 g~l~v~~~~-~~~~~~~~p~~~~~~~~~-~~~~~~gTp~-----v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~  302 (386)
T 3qm2_A          230 TLVIVREDL-LGKAHESCPSILDYTVLN-DNDSMFNTPP-----TFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYG  302 (386)
T ss_dssp             EEEEEEGGG-CSCCCTTSCGGGCHHHHH-HC-------C-----CSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECHHH-HhhhcccCCcHHHHHHHh-hcCCCCCCCc-----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            999998753 222222222222100000 0000011111     12345666677766667 899999999999999999


Q ss_pred             HHhcCCCCe-EEecCC--ce-eEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEec
Q psy12303        381 KIKSMPDKF-YLILEP--EM-VNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNII  456 (480)
Q Consensus       381 ~l~~~~~g~-~~~~~~--~~-~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~  456 (480)
                      .|++ + ++ ....++  .+ .+++|.+....            +   ...+...|.+.|+. +.. .... .+.+|+| 
T Consensus       303 ~l~~-~-~~~~~~~~~~~rs~~iv~f~~~~~~------------~---~~~~~~~L~~~gI~-~~~-g~~~-~~~iRiS-  361 (386)
T 3qm2_A          303 VIDN-S-DFYRNDVAQANRSRMNVPFQLADNT------------L---DKVFLEESFAAGLH-ALK-GHRV-VGGMRAS-  361 (386)
T ss_dssp             HHHT-C-SSEECCBCGGGBCSSEEEEEESSGG------------G---HHHHHHHHHHTTEE-CCB-CCTT-TCSEEEE-
T ss_pred             HHHH-C-CCcccCCCHHHcCceEEEEECCCcc------------c---cHHHHHHHHHCCCE-EeC-CCCC-cCeEEEE-
Confidence            9999 5 55 332222  22 46777653211            1   12445567777743 222 1122 2469999 


Q ss_pred             ccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        457 SSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       457 ~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ++.++|++|||++++.|+++.++
T Consensus       362 ~~~~~t~edId~l~~~l~~~~~~  384 (386)
T 3qm2_A          362 IYNAMPIEGVKALTDFMIDFERR  384 (386)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHh
Confidence            78899999999999999998753

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.94  E-value=1.6e-25  Score=220.15  Aligned_cols=316  Identities=12%  Similarity=0.052  Sum_probs=210.0

Q ss_pred             HHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCce
Q psy12303         90 GEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQL  169 (480)
Q Consensus        90 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~  169 (480)
                      .+.+...+.. ...|.......    ++++.+++++|.+++++++|+|||+|+..++.++..              ||+ 
T Consensus        44 ~~a~~~~~~~-~~~y~~~~~~~----~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~~--------------~gd-  103 (381)
T 1v2d_A           44 LEAVRRALGR-QDQYAPPAGLP----ALREALAEEFAVEPESVVVTSGATEALYVLLQSLVG--------------PGD-  103 (381)
T ss_dssp             HHHHHHHTTT-SCSCCCTTCCH----HHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCC--------------TTC-
T ss_pred             HHHHHHHHHH-hcCCCCCCCCH----HHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCC--------------CCC-
Confidence            3555554443 22343332333    455667788999877899999999999999988743              445 


Q ss_pred             EEEecCCCchhHHHHHHHcCCCCCCeEEeeCC---CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---h
Q psy12303        170 VMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD---KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---I  243 (480)
Q Consensus       170 ~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~---~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l  243 (480)
                      .|+++..+|+++...++..|.   +++.+|.+   +++.+|+++|+++++++      +++|++++++|++|.+.|   +
T Consensus       104 ~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~l  174 (381)
T 1v2d_A          104 EVVVLEPFFDVYLPDAFLAGA---KARLVRLDLTPEGFRLDLSALEKALTPR------TRALLLNTPMNPTGLVFGEREL  174 (381)
T ss_dssp             EEEEEESCCTTHHHHHHHTTC---EEEEEECEEETTEEECCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHH
T ss_pred             EEEEcCCCchhHHHHHHHcCC---EEEEEeCCCCCccCCcCHHHHHHhcCcC------CEEEEECCCCCCCCCccCHHHH
Confidence            788888999999999999888   78889987   56789999999988643      899999999999999976   8


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCccc
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEY  322 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~  322 (480)
                      ++|.++|++||+++|+|++|+.+.+ ...... ...-..+.|+++.++||+++.| ..+|++++++ +......... .+
T Consensus       175 ~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~-~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~-~~~~~~~~~~-~~  250 (381)
T 1v2d_A          175 EAIARLARAHDLFLISDEVYDELYY-GERPRR-LREFAPERTFTVGSAGKRLEATGYRVGWIVGPK-EFMPRLAGMR-QW  250 (381)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTCBS-SSCCCC-HHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCT-TTHHHHHHHH-HH
T ss_pred             HHHHHHHHHcCCEEEEEcCcccccc-CCCCCC-HHHhcCCCEEEEeechhhcCCcccceEEEEeCH-HHHHHHHHHH-hh
Confidence            9999999999999999999998754 111000 1000226899999999998744 4589988754 3433321100 00


Q ss_pred             ccccccccCcccCCCCccccCCCCCCchHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEE
Q psy12303        323 LFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG-DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVS  401 (480)
Q Consensus       323 l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~  401 (480)
                      ..              +   +.......++..++.... .++++++.++..++++++.+.|++  .|++++. +..+.++
T Consensus       251 ~~--------------~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~-~~~~~~~  310 (381)
T 1v2d_A          251 TS--------------F---SAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRA--MGLRVYV-PEGTYFL  310 (381)
T ss_dssp             HT--------------S---SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH--TTCCEEC-CSBSSEE
T ss_pred             cc--------------c---CCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHH--CCCEecC-CCcceEE
Confidence            00              0   000011122223333211 456778889999999999999999  5888864 4444443


Q ss_pred             EEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC---CcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        402 FWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN---DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       402 f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~---~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      +...+..                  ++...+.+.|+.+.....+.   ...+++|+++ ..  ++++|+++++.|+++++
T Consensus       311 ~~~~~~~------------------~~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~-~~--~~~~i~~~~~~l~~~l~  369 (381)
T 1v2d_A          311 MAELPGW------------------DAFRLVEEARVALIPASAFYLEDPPKDLFRFAF-CK--TEEELHLALERLGRVVN  369 (381)
T ss_dssp             EEECTTC------------------CHHHHHHHTCEECEEGGGGCSSSCCTTEEEEEC-CS--CHHHHHHHHHHHHHHC-
T ss_pred             EEecChH------------------hHHHHHHhCCEEEecchHhCCCCCCCCEEEEEe-CC--CHHHHHHHHHHHHHHHh
Confidence            3222211                  03345566775443322221   1157999994 33  89999999999998875


Q ss_pred             c
Q psy12303        479 D  479 (480)
Q Consensus       479 ~  479 (480)
                      +
T Consensus       370 ~  370 (381)
T 1v2d_A          370 S  370 (381)
T ss_dssp             -
T ss_pred             h
Confidence            4

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.94  E-value=1.5e-24  Score=212.83  Aligned_cols=323  Identities=10%  Similarity=0.041  Sum_probs=219.1

Q ss_pred             hHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCC
Q psy12303         85 VVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGL  162 (480)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~  162 (480)
                      ++.+. +.+...+......|.. .. .++++.+.+++.+.+|.  ++.++++|+|||+|+..++.++..           
T Consensus        38 ~~~v~-~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~-----------  103 (377)
T 3fdb_A           38 CPAVL-QAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTP-----------  103 (377)
T ss_dssp             CHHHH-HHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSC-----------
T ss_pred             CHHHH-HHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhcC-----------
Confidence            34444 4444444333334443 33 67788888888887774  567899999999999999987753           


Q ss_pred             CccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC
Q psy12303        163 SAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP  242 (480)
Q Consensus       163 ~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~  242 (480)
                         ||+ .|+++..+|.++...+...|.   +++.+|.+++  +|+++|+++++++      +++|++++++|++|.+.|
T Consensus       104 ---~gd-~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~--~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~  168 (377)
T 3fdb_A          104 ---AQS-KVIVPTPAYPPFFHLLSATQR---EGIFIDATGG--INLHDVEKGFQAG------ARSILLCNPYNPLGMVFA  168 (377)
T ss_dssp             ---TTC-CEEEEESCCTHHHHHHHHHTC---CEEEEECTTS--CCHHHHHHHHHTT------CCEEEEESSBTTTTBCCC
T ss_pred             ---CCC-EEEEcCCCcHhHHHHHHHcCC---EEEEccCCCC--CCHHHHHHHhccC------CCEEEEeCCCCCCCCCCC
Confidence               445 678888899999999999998   8899999876  9999999999875      789999999999999975


Q ss_pred             ---hHHHHHHHHHcCcEEEeecccccccccc-ccccCcccCCC--CCCccceeCccccCCC-cccceEEEEeCchhhHhh
Q psy12303        243 ---IEEIADICQKYNMWLHVDAAWGGGLLLS-KKYRHPRLTGI--ERADSVTWNPHKLMGT-LLQCSTIHFKQDGLLISC  315 (480)
Q Consensus       243 ---l~~I~~i~~~~~~~l~vD~a~~~~~~~~-~~~~~~~~~~~--~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~  315 (480)
                         +++|.++|++||+++|+|++|+.+.... ... . .+..+  .+.++++.+++|+++. +.++|++++.++......
T Consensus       169 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~-~-~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~  246 (377)
T 3fdb_A          169 PEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTV-A-AGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHW  246 (377)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCC-G-GGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCc-c-cHHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHH
Confidence               6777777999999999999999865433 111 0 11111  1334778899999964 357888877676655543


Q ss_pred             hcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        316 NQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       316 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                      ..... +...                    ....+..+++...+  +.+.++++.++..++++++.+.|++++|+++++ 
T Consensus       247 ~~~~~-~~~~--------------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-  304 (377)
T 3fdb_A          247 QQLSP-VIKD--------------------GASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKIT-  304 (377)
T ss_dssp             HHSCH-HHHC--------------------CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEEC-
T ss_pred             HHHHH-hhcC--------------------CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEe-
Confidence            32111 1000                    01223333333222  356678888999999999999998734799885 


Q ss_pred             CCceeEEEEEeecC-ccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeCC--cccEEEEecccCCCCHHHHHHH
Q psy12303        394 EPEMVNVSFWYLPT-RVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPLND--LPNFFRNIISSAAVTEGDIDFL  469 (480)
Q Consensus       394 ~~~~~~v~f~~~~~-~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~~--~~~~~R~~~~~~~~t~~di~~~  469 (480)
                      .+..+.+.+...+. ...               .++...+.++ |+ .+.++...+  ..+++|+++.   +++++|+++
T Consensus       305 ~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~gi-~v~~g~~~~~~~~~~~Ris~~---~~~e~i~~~  365 (377)
T 3fdb_A          305 PMQATYLMWIDFRDTTIE---------------GSPSEFFIEKAKV-AMNDGAWFGEDGTGFCRLNFA---TSREVLEEA  365 (377)
T ss_dssp             CCSBCSEEEEECTTSCCC---------------SCHHHHHHHHHCE-ECEEGGGGCGGGTTEEEEECC---SCHHHHHHH
T ss_pred             cCCeeEEEEEECcccCCC---------------HHHHHHHHHhCCE-EecCChhccCCCCCEEEEEeC---CCHHHHHHH
Confidence            45555554322222 111               1244555555 64 444332222  1579999943   489999999


Q ss_pred             HHHHHHhhcc
Q psy12303        470 LTEMDRLGHD  479 (480)
Q Consensus       470 ~~~l~~~~~~  479 (480)
                      +++|++++++
T Consensus       366 l~~l~~~l~~  375 (377)
T 3fdb_A          366 IDRMAKAVSH  375 (377)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhh
Confidence            9999998765

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.94  E-value=3.2e-25  Score=221.66  Aligned_cols=337  Identities=12%  Similarity=0.057  Sum_probs=220.3

Q ss_pred             HHHHHHHHcCc---CCcchhcChhhHHHHHHHHHHHHHHhCC--CCC-CeEECCChhHHHHHHHHHHHHhcCchhHhcCC
Q psy12303         89 AGEWLIATANT---NMFTYEIAPVFILMETVVLEKMRQIIGW--QGG-DSILAPGGSISNLYAFLAARHKMFPTYKEKGL  162 (480)
Q Consensus        89 ~~~~l~~~~~~---~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~  162 (480)
                      +.+.+...+..   ....|....+..++++++.+++.+.+|.  +++ ++++|+|||+|+..++.++..           
T Consensus        55 v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~-----------  123 (429)
T 1yiz_A           55 ALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVD-----------  123 (429)
T ss_dssp             HHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCC-----------
T ss_pred             HHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcC-----------
Confidence            33555554443   2234444445678888999999888885  456 899999999999999988743           


Q ss_pred             CccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC----------CCCCCHHHHHHHHHHHHHCCCccEEEEecc
Q psy12303        163 SAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK----------RGRLIPSELERLVLERKAKGDIPFFVNCTS  232 (480)
Q Consensus       163 ~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~----------~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~  232 (480)
                         ||+ .|+++.+.|+++...+...|.   +++.+|.+.          ++.+|+++|++++++.      +++|++++
T Consensus       124 ---~gd-~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~  190 (429)
T 1yiz_A          124 ---EGD-EVIIIEPFFDCYEPMVKAAGG---IPRFIPLKPNKTGGTISSADWVLDNNELEALFNEK------TKMIIINT  190 (429)
T ss_dssp             ---TTC-EEEEEESCCTTHHHHHHHTTC---EEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTT------EEEEEEES
T ss_pred             ---CCC-EEEEcCCCchhHHHHHHHcCC---EEEEEeCCcccccccccccCcccCHHHHHHHhccC------ceEEEECC
Confidence               445 788888899999999998887   788888865          3579999999988643      89999999


Q ss_pred             CCCccccccC---hHHHHHHHHHcCcEEEeeccccccccccccccC-cccCCCCCCccceeCccccCCCc-ccceEEEEe
Q psy12303        233 GTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH-PRLTGIERADSVTWNPHKLMGTL-LQCSTIHFK  307 (480)
Q Consensus       233 ~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~  307 (480)
                      ++|++|.+.|   +++|.++|++||+++|+|++|+++.+....... ..+.+..+.|+++.++||+++.| ..+|+++++
T Consensus       191 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~  270 (429)
T 1yiz_A          191 PHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGP  270 (429)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESC
T ss_pred             CCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEEEEeC
Confidence            9999999975   999999999999999999999986542211100 01111236789999999999833 458998875


Q ss_pred             CchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh----c--HHHHHHHHHHHHHHHHHHHHH
Q psy12303        308 QDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK----G--DEGFEKQIDRLMELAEYMVKK  381 (480)
Q Consensus       308 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~----g--~~~~~~~~~~~~~l~~~l~~~  381 (480)
                       ++......... .+.              .+   +.......++..+++..    +  .+.+++..++..++++++.+.
T Consensus       271 -~~~~~~l~~~~-~~~--------------~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  331 (429)
T 1yiz_A          271 -EALLKNLQMVH-QNC--------------VY---TCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASF  331 (429)
T ss_dssp             -HHHHHHHHHHH-HTT--------------TC---CCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHH-hhc--------------cc---CCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence             44443322110 000              00   00001122233334331    2  445778888899999999999


Q ss_pred             HhcCCCCeEEecCCceeE-EEEEeecCccCCC--chhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCC------cccE
Q psy12303        382 IKSMPDKFYLILEPEMVN-VSFWYLPTRVRNM--PHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLND------LPNF  451 (480)
Q Consensus       382 l~~~~~g~~~~~~~~~~~-v~f~~~~~~~~~~--~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~------~~~~  451 (480)
                      |++ . ++++.. |..+. +++.+ +......  ....  ....  ..++.++|. +.|+.+.....+..      ..++
T Consensus       332 L~~-~-g~~~~~-~~~g~~~~~~~-~~~~~~~~~~~~~--~~~~--~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~  403 (429)
T 1yiz_A          332 LAE-V-GMNPTV-PQGGYFMVADW-SSLDSKVDLTQET--DARK--DYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDF  403 (429)
T ss_dssp             HHH-H-TCEEEE-CSBSSEEEEEC-CSSCTTTTCCSSS--SSCH--HHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTE
T ss_pred             HHh-C-CCcccC-CCcceEEEEEc-ccccccccccccc--cCCC--HHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCe
Confidence            998 5 888764 44443 44433 2210000  0000  0000  235667676 56744332212211      1469


Q ss_pred             EEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        452 FRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       452 ~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +|+++.   +++++|++++++|+++++.
T Consensus       404 iRis~~---~~~e~i~~~l~~l~~~l~~  428 (429)
T 1yiz_A          404 VRYCFF---KKDENLQKAAEILRKWKGS  428 (429)
T ss_dssp             EEEECC---SCHHHHHHHHHHHHHHSCC
T ss_pred             EEEEec---CCHHHHHHHHHHHHHhccC
Confidence            999943   4899999999999998764

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.94  E-value=7.6e-25  Score=218.14  Aligned_cols=321  Identities=12%  Similarity=0.101  Sum_probs=208.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      .++.+++++.+++++|.+  ..++++|||+|+..++.++.-.             ||+ .|+++..+|+++..++...|.
T Consensus        41 ~~l~~~l~~~la~~~g~~--~~i~~~~gt~al~~~~~~~~~~-------------~gd-~Vl~~~~~~~~~~~~~~~~g~  104 (418)
T 2c81_A           41 ESMERKFAKAFADFNGVP--YCVPTTSGSTALMLALEALGIG-------------EGD-EVIVPSLTWIATATAVLNVNA  104 (418)
T ss_dssp             CCHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTCC-------------TTC-EEEEESSSCTHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCCC-------------CcC-EEEECCCccHhHHHHHHHcCC
Confidence            455667788899999997  4788999999999999876211             445 788999999999999999888


Q ss_pred             CCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccc
Q psy12303        191 GTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLL  269 (480)
Q Consensus       191 ~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~  269 (480)
                         +++.+++++ ++.+|+++|+++++++      +++|++++   ++|...++++|.++|+++|+++|+|++|+.+...
T Consensus       105 ---~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~---~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~  172 (418)
T 2c81_A          105 ---LPVFVDVEADTYCIDPQLIKSAITDK------TKAIIPVH---LFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVW  172 (418)
T ss_dssp             ---EEEEECBCTTTCSBCHHHHGGGCCTT------EEEECCBC---CTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEE
T ss_pred             ---EEEEEecCCCCCCcCHHHHHHhhCCC------CeEEEEeC---CcCCcccHHHHHHHHHHCCCEEEEECcccccCcc
Confidence               888999886 7899999999998754      88888754   6899999999999999999999999999988632


Q ss_pred             cccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccc--cCcccC--CCC-ccccCC
Q psy12303        270 SKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKL--YDVRYD--TGD-KVIQCG  344 (480)
Q Consensus       270 ~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~--~~~-~~~~~~  344 (480)
                      ... .   ......+++.++++||+++.+ .+|+++.+++.+..................  ....+.  .+. ..+..+
T Consensus       173 ~~~-~---~~~~~~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  247 (418)
T 2c81_A          173 NNQ-R---AGTIGDIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSN  247 (418)
T ss_dssp             TTE-E---TTSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCB
T ss_pred             CCE-e---cccccceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcC
Confidence            111 1   111123566666669999873 667777655554433221111000000000  000000  000 001111


Q ss_pred             CCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCce-e-----EEEEEeecCccCCCchhhHH
Q psy12303        345 RHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEM-V-----NVSFWYLPTRVRNMPHEKRL  418 (480)
Q Consensus       345 r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~-~-----~v~f~~~~~~~~~~~~~~~~  418 (480)
                      .+...+..+..+..  .+.+++..++..++++++.+.|.+ ++++++..++.. +     ++.+.+......+.+     
T Consensus       248 ~~~~~~~aa~~~~~--l~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  319 (418)
T 2c81_A          248 YCLSEFQSAILLDQ--LQELDDKNAIREKNAMFLNDALSK-IDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLN-----  319 (418)
T ss_dssp             CCCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTT-STTEEECCCCTTEEECCCSEEEEEECGGGTTTCC-----
T ss_pred             CCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcc-CCCcccCCCCCCCcccccEEEEEEEccccccccC-----
Confidence            22233333333222  445778888889999999999999 889998755543 1     232433210000111     


Q ss_pred             HHhhhhhHHHHHHHHhc-ccE---EEeee-ee---------------------------CCc-------ccEEEEecccC
Q psy12303        419 NILGEITPILKGRMMQA-GTM---MVGYQ-PL---------------------------NDL-------PNFFRNIISSA  459 (480)
Q Consensus       419 ~~l~~~~~~i~~~l~~~-g~~---~~~~~-~~---------------------------~~~-------~~~~R~~~~~~  459 (480)
                            ..++.+.|.++ |+.   ..... +.                           ...       ...+|++ +++
T Consensus       320 ------~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~-~~~  392 (418)
T 2c81_A          320 ------ADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIH-HAI  392 (418)
T ss_dssp             ------HHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEE-GGG
T ss_pred             ------HHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEec-CCc
Confidence                  23566777777 754   32211 00                           000       2589999 889


Q ss_pred             CC-CHHHHHHHHHHHHHhhcc
Q psy12303        460 AV-TEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       460 ~~-t~~di~~~~~~l~~~~~~  479 (480)
                      .+ |++||++++++|++++++
T Consensus       393 ~~gt~edi~~~~~~l~~~~~~  413 (418)
T 2c81_A          393 LLAEPSHLSLLVDAVAELARK  413 (418)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            99 999999999999998765

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.94  E-value=3.6e-25  Score=217.19  Aligned_cols=306  Identities=11%  Similarity=0.074  Sum_probs=207.7

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHh-CCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchh
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQII-GWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS  180 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~-g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s  180 (480)
                      ..|...++..++++.    +++++ +.++.++++|+|||+|+..++.++..              ||+ .|+++.++|.+
T Consensus        57 ~~y~~~~g~~~l~~~----la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~--------------~gd-~Vl~~~~~~~~  117 (375)
T 3op7_A           57 LNYGWIEGSPAFKKS----VSQLYTGVKPEQILQTNGATGANLLVLYSLIE--------------PGD-HVISLYPTYQQ  117 (375)
T ss_dssp             CSSCCTTCCHHHHHH----HHTTSSSCCGGGEEEESHHHHHHHHHHHHHCC--------------TTC-EEEEEESSCTH
T ss_pred             cCCCCCCChHHHHHH----HHHHhccCChhhEEEcCChHHHHHHHHHHhcC--------------CCC-EEEEeCCCchh
Confidence            445444445555555    66655 46667899999999999999988753              555 78888899999


Q ss_pred             HHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCc
Q psy12303        181 VRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNM  255 (480)
Q Consensus       181 ~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~  255 (480)
                      +...+...|.   +++.+|++.  ++.+|+++|+++++++      +++|++++++|++|.+.|   +++|.++|++||+
T Consensus       118 ~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~  188 (375)
T 3op7_A          118 LYDIPKSLGA---EVDLWQIEEENGWLPDLEKLRQLIRPT------TKMICINNANNPTGAVMDRTYLEELVEIASEVGA  188 (375)
T ss_dssp             HHHHHHHTTC---EEEEEEEEGGGTTEECHHHHHHHCCTT------CCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHcCC---EEEEEeccccCCCCCCHHHHHHhhccC------CeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            9999999988   788888763  4568999999999754      889999999999999999   9999999999999


Q ss_pred             EEEeeccccccccccccccCcccCCCCCCccceeCccccCCC-cccceEEEEeCchhhHhhhcCCcccccccccccCccc
Q psy12303        256 WLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGT-LLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRY  334 (480)
Q Consensus       256 ~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  334 (480)
                      ++++|++|+.+... +. .  ......+.++++.+++|.++. +.++|+++. ++++.+........+..          
T Consensus       189 ~li~De~~~~~~~~-~~-~--~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~-~~~l~~~~~~~~~~~~~----------  253 (375)
T 3op7_A          189 YILSDEVYRSFSEL-DV-P--SIIEVYDKGIAVNSLSKTYSLPGIRIGWVAA-NHQVTDILRDYRDYTMI----------  253 (375)
T ss_dssp             EEEEECCSCCCSSS-CC-C--CHHHHCTTEEEEEESSSSSSCGGGCCEEEEC-CHHHHHHHTTTGGGTTS----------
T ss_pred             EEEEEccccccccc-CC-C--chhhhcCCEEEEeEChhhcCCcccceEEEEe-CHHHHHHHHHHHhhhcc----------
Confidence            99999999986543 11 0  111111445778889999984 356788886 55555544321111000          


Q ss_pred             CCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCch
Q psy12303        335 DTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPH  414 (480)
Q Consensus       335 ~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~  414 (480)
                              ++.......+...+.. ..+.+++..++..++++++.+.|++ .+++.++ .|..+.+.|...+....    
T Consensus       254 --------~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~-~~~~~~~~~~~~~~~~~----  318 (375)
T 3op7_A          254 --------CAGVFDDLVAQLALAH-YQEILERNRHILEENLAILDQWIEE-EPLVSYI-RPAVVSTSFVKIAVDMP----  318 (375)
T ss_dssp             --------CCCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHH-CTTEEEC-CCSSSSCEEEEECCSSC----
T ss_pred             --------CCCcHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHhh-CCCceEe-cCCCeEEEeEEcCCCCC----
Confidence                    0000112222233332 2345666777778899999999999 8899875 44444444433332211    


Q ss_pred             hhHHHHhhhhhHHHHHHH-HhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        415 EKRLNILGEITPILKGRM-MQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       415 ~~~~~~l~~~~~~i~~~l-~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                                ..++.+++ .+.|+.+.....+.. .+++|+++.   .+.++|++++++|++++++
T Consensus       319 ----------~~~~~~~ll~~~gi~v~~g~~~~~-~~~iRi~~~---~~~~~i~~~l~~l~~~l~~  370 (375)
T 3op7_A          319 ----------MEDFCLQLLQEHGVLLVPGNRFER-DGYVRLGFA---CEQETLIKGLEKLSQFLRR  370 (375)
T ss_dssp             ----------HHHHHHHHHHHHCEECEEGGGGTC-TTEEEECCC---SCHHHHHHHHHHHHHHHGG
T ss_pred             ----------HHHHHHHHHHhCCEEEeChhhhCC-CCeEEEEec---CCHHHHHHHHHHHHHHHHH
Confidence                      23455666 466754433322222 579999943   3559999999999988764

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.94  E-value=1.7e-24  Score=213.44  Aligned_cols=308  Identities=14%  Similarity=0.081  Sum_probs=202.0

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCe
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNC  195 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v  195 (480)
                      ++++.+++++|.+.  .+++++||+|+..++.++.-.             ||+ .|+++..+|+++..++...|.   ++
T Consensus        42 ~l~~~la~~~~~~~--~i~~~sGt~al~~~l~~l~~~-------------~gd-~Vi~~~~~~~~~~~~~~~~g~---~~  102 (388)
T 1b9h_A           42 SFEREFAAHHGAAH--ALAVTNGTHALELALQVMGVG-------------PGT-EVIVPAFTFISSSQAAQRLGA---VT  102 (388)
T ss_dssp             HHHHHHHHHTTCSE--EEEESCHHHHHHHHHHHTTCC-------------TTC-EEEEESSSCTHHHHHHHHTTC---EE
T ss_pred             HHHHHHHHHhCCCe--EEEeCCHHHHHHHHHHHcCCC-------------CcC-EEEECCCccHHHHHHHHHcCC---EE
Confidence            45566888888863  455556699999998876211             445 788999999999999999988   88


Q ss_pred             EEeeCCCC-CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccccccc
Q psy12303        196 VEVPSDKR-GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYR  274 (480)
Q Consensus       196 ~~v~~~~~-~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~  274 (480)
                      +.++++++ +.+|+++|+++++++      +++|+   ++|++|.+.|+++|.++|++||+++|+|++|+.+......  
T Consensus       103 ~~v~~~~~~~~~d~~~l~~~i~~~------~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~--  171 (388)
T 1b9h_A          103 VPVDVDAATYNLDPEAVAAAVTPR------TKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGK--  171 (388)
T ss_dssp             EEECBCTTTCCBCHHHHHHHCCTT------EEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTE--
T ss_pred             EEEecCCCcCCCCHHHHHHhcCcC------ceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCe--
Confidence            99999864 889999999998654      77777   7888999999999999999999999999999976543211  


Q ss_pred             CcccCCCCCCccceeCccccCCCcccceEEEEeCchh--hHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHH
Q psy12303        275 HPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGL--LISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL  352 (480)
Q Consensus       275 ~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~  352 (480)
                        .+.....+++.++|.||+++++ .+|+++.++...  ......... +  +.... ...+..  .....+.+...+.+
T Consensus       172 --~~~~~~~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~~~~~~~~~-~--~~~~~-~~~~~~--~~~g~~~~~~~~~~  242 (388)
T 1b9h_A          172 --RVGELDSIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRHS-C--GRPRD-DRRYFH--KIAGSNMRLNEFSA  242 (388)
T ss_dssp             --EGGGSSSCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHTB-T--TCCTT-CSSCCC--CSCCCBCBCBHHHH
T ss_pred             --ecccccceEEEEccCCCcccCC-CeEEEEECCHHHHHHHHHHHHHh-C--CCCcc-Ccccee--ecccccCCcCHHHH
Confidence              1111114677777888999864 567777766544  333221110 0  00000 000000  00001112334444


Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-----Cc-eeEEEEEeecCccCCCchhhHHHHhhhhhH
Q psy12303        353 WLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-----PE-MVNVSFWYLPTRVRNMPHEKRLNILGEITP  426 (480)
Q Consensus       353 ~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-----~~-~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~  426 (480)
                      ++.+..  .+.+++.+++..++++++.+.|++ ++++++..+     +. ...+++.+ +..    ..      .+  ..
T Consensus       243 a~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~------~~--~~  306 (388)
T 1b9h_A          243 SVLRAQ--LARLDEQIAVRDERWTLLSRLLGA-IDGVVPQGGDVRADRNSHYMAMFRI-PGL----TE------ER--RN  306 (388)
T ss_dssp             HHHHHH--HTTHHHHHHHHHHHHHHHHHHHHT-STTCEECCCCTTCCBCCCSEEEEEC-TTC----CH------HH--HH
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHHHHHhcc-CCCccccCCCcCCCccceEEEEEEe-CCc----Cc------cc--HH
Confidence            443333  445677888888999999999999 889988652     22 23444433 210    00      00  24


Q ss_pred             HHHHHHHhcccEEEeee-eeC--------------------C-------cccEEEEecccCCC-CHHHHHHHHHHHHHhh
Q psy12303        427 ILKGRMMQAGTMMVGYQ-PLN--------------------D-------LPNFFRNIISSAAV-TEGDIDFLLTEMDRLG  477 (480)
Q Consensus       427 ~i~~~l~~~g~~~~~~~-~~~--------------------~-------~~~~~R~~~~~~~~-t~~di~~~~~~l~~~~  477 (480)
                      ++.+.|.+.|+.+.... +..                    .       ....+|++ ++..+ |++||+++++.|+++.
T Consensus       307 ~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~-~~~~~~t~edi~~~~~~l~~~~  385 (388)
T 1b9h_A          307 ALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLH-HRVLLAGEPELHATAEIIADAV  385 (388)
T ss_dssp             HHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEE-GGGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEec-CCCCCCCHHHHHHHHHHHHHHH
Confidence            56778888886543211 100                    0       02469999 88888 9999999999999987


Q ss_pred             cc
Q psy12303        478 HD  479 (480)
Q Consensus       478 ~~  479 (480)
                      ++
T Consensus       386 ~~  387 (388)
T 1b9h_A          386 AR  387 (388)
T ss_dssp             HH
T ss_pred             hh
Confidence            64

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.94  E-value=3.3e-25  Score=219.30  Aligned_cols=311  Identities=13%  Similarity=0.075  Sum_probs=211.6

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC-ceEEEecCCCc
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG-QLVMFTSDQCH  178 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g-~~~vl~~~~~h  178 (480)
                      ..|....+..++.+++.+++.+.+|.  +++++++|+|+|+|+..++.++..              || + .|++..++|
T Consensus        70 ~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~--------------~g~d-~vl~~~p~~  134 (398)
T 3ele_A           70 HGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTS--------------DAYD-EFITIAPYF  134 (398)
T ss_dssp             HSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCC--------------STTC-EEEEESSCC
T ss_pred             CCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcC--------------CCCC-EEEEeCCCc
Confidence            34444555678899999999999885  567899999999999999988753              55 4 788888999


Q ss_pred             hhHHHHHHHcCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHH--
Q psy12303        179 YSVRSCAAVCGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQK--  252 (480)
Q Consensus       179 ~s~~~~~~~~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~--  252 (480)
                      +++...+...|.   +++.+|.++ ++.+|+++|+++++++      +++|++++++||+|.+.|   +++|.++|++  
T Consensus       135 ~~~~~~~~~~g~---~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~  205 (398)
T 3ele_A          135 PEYKVFVNAAGA---RLVEVPADTEHFQIDFDALEERINAH------TRGVIINSPNNPSGTVYSEETIKKLSDLLEKKS  205 (398)
T ss_dssp             THHHHHHHHTTC---EEEEECCCTTTSSCCHHHHHHTCCTT------EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHcCC---EEEEEecCCcCCcCCHHHHHHHhCcC------CCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhh
Confidence            999999999988   889999875 5689999999998754      899999999999999988   6777789999  


Q ss_pred             ----cCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhH-hhhcCCccccccc
Q psy12303        253 ----YNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLI-SCNQMSAEYLFMQ  326 (480)
Q Consensus       253 ----~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~-~~~~~~~~~l~~~  326 (480)
                          ||+++|+|++|+.+........  ......+.++++.+++|+++ .+.++|++++++..... ........+....
T Consensus       206 ~~~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~  283 (398)
T 3ele_A          206 KEIGRPIFIIADEPYREIVYDGIKVP--FVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRAL  283 (398)
T ss_dssp             HHHTSCCEEEEECTTTTCBCTTCCCC--CGGGTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHT
T ss_pred             hccCCCeEEEEeccccccccCCCCcC--ChHhhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhc
Confidence                9999999999998654321111  11122255688889999998 55789999876652110 0000000000000


Q ss_pred             ccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeec
Q psy12303        327 DKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLP  406 (480)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~  406 (480)
                                +      ......+..++....+...   ...++..++++++.+.|++ . ++++. .|..+.+.+...+
T Consensus       284 ----------~------~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~~~~~~~~~~~  341 (398)
T 3ele_A          284 ----------G------YVCAPSLFQKMIVKCQGAT---GDINAYKENRDLLYEGLTR-I-GYHCF-KPDGAFYMFVKAL  341 (398)
T ss_dssp             ----------T------CCCSCHHHHHHHTTCTTCC---CCHHHHHHHHHHHHHHHHH-H-TCCEE-CCSBSSEEEEECS
T ss_pred             ----------c------ccCCCHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHH-c-CCeec-CCCeeEEEEEEcC
Confidence                      0      0001122333332222111   1346677888899999998 4 77775 4555553332222


Q ss_pred             CccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        407 TRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       407 ~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .. .              ..++.+.|.+.|+.+... ...+..+++|+++ .  +++++|++++++|++++++
T Consensus       342 ~~-~--------------~~~~~~~l~~~gi~v~~g-~~~~~~~~iRis~-~--~~~e~i~~~l~~l~~~l~~  395 (398)
T 3ele_A          342 ED-D--------------SNAFCEKAKEEDVLIVAA-DGFGCPGWVRISY-C--VDREMIKHSMPAFEKIYKK  395 (398)
T ss_dssp             SS-C--------------HHHHHHHHHTTTEECEES-GGGTCTTEEEEEC-C--SCHHHHHHHHHHHHHHHHH
T ss_pred             CC-C--------------HHHHHHHHHHCCEEEeCc-cccCCCCeEEEEe-c--CCHHHHHHHHHHHHHHHHH
Confidence            11 0              235667787888544433 3222257999994 3  6999999999999988764

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.94  E-value=2.6e-25  Score=219.93  Aligned_cols=299  Identities=14%  Similarity=0.084  Sum_probs=200.6

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCe
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNC  195 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v  195 (480)
                      ++++.+++++|.+++++++|+|+++|+..++.++.+              ||+ .|++..++|+++...+...|.   ++
T Consensus        78 ~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~~--------------~gd-~Vl~~~p~y~~~~~~~~~~g~---~~  139 (397)
T 2zyj_A           78 PLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFLD--------------EGS-PVLLEAPSYMGAIQAFRLQGP---RF  139 (397)
T ss_dssp             HHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCC--------------TTC-EEEEEESCCHHHHHHHHTTCC---EE
T ss_pred             HHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhCC--------------CCC-EEEEeCCCcHHHHHHHHHcCC---EE
Confidence            344556666788777899999999999999887743              445 788888899999999998887   78


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEE-EeccCCCccccccCh---HHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        196 VEVPSDKRGRLIPSELERLVLERKAKGDIPFFV-NCTSGTTVLGAFDPI---EEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       196 ~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v-~~~~~~~~~G~~~~l---~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                      +.+|.++++ +|+++|++++++.     ++++| ++++++|++|.+.|.   ++|.++|++||+++|+|++|+.+.....
T Consensus       140 ~~~~~~~~~-~d~~~l~~~l~~~-----~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~  213 (397)
T 2zyj_A          140 LTVPAGEEG-PDLDALEEVLKRE-----RPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEA  213 (397)
T ss_dssp             EEEEEETTE-ECHHHHHHHHHHC-----CCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSC
T ss_pred             EecCcCCCC-CCHHHHHHHHhhc-----CCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCC
Confidence            888887665 9999999999761     26676 578999999999775   5899999999999999999998764221


Q ss_pred             cccCcccCCC--C---CCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC
Q psy12303        272 KYRHPRLTGI--E---RADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH  346 (480)
Q Consensus       272 ~~~~~~~~~~--~---~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~  346 (480)
                      .. . .+..+  +   +..+++.++||+++.+.++|+++++ ++...........+..                  +   
T Consensus       214 ~~-~-~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~------------------~---  269 (397)
T 2zyj_A          214 RL-P-SLFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAH-PEALQKLVQAKQGADL------------------H---  269 (397)
T ss_dssp             CC-C-CHHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECC-HHHHHHHHHHHHHHHS------------------S---
T ss_pred             CC-C-chhhhCcccCCCeEEEEecccccccccceeEEEecC-HHHHHHHHHHHHhhcC------------------C---
Confidence            10 0 11111  1   1236788999999943678998875 4444332211111100                  0   


Q ss_pred             CCchHHHHHHHHh--cH-HHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEecCCceeEEEEEeecCccCCCchhhHHHHhh
Q psy12303        347 NDIFKLWLQWRAK--GD-EGFEKQIDRLMELAEYMVKKIKSMPD-KFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILG  422 (480)
Q Consensus       347 ~~~l~~~~~l~~~--g~-~~~~~~~~~~~~l~~~l~~~l~~~~~-g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~  422 (480)
                      ...+...++...+  +. +.+++..++..++++++.+.|+++.| ++++.. |..+.+++...+....            
T Consensus       270 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~-~~~g~~~~~~~~~~~~------------  336 (397)
T 2zyj_A          270 TPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTR-PKGGMFVWMELPKGLS------------  336 (397)
T ss_dssp             CCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECC-CSBSSEEEEECSTTCC------------
T ss_pred             CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEcc-CCccEEEEEEcCCCCC------------
Confidence            1122233333333  22 45777788888899999999986236 688753 4444444322222111            


Q ss_pred             hhhHHHHHHHHhcccEEEeeeeeC---CcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        423 EITPILKGRMMQAGTMMVGYQPLN---DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       423 ~~~~~i~~~l~~~g~~~~~~~~~~---~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                        ..++.++|.++|+.+.....+.   ...+++|+++. .. ++++|++++++|++++++
T Consensus       337 --~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~-~~-~~~~i~~~~~~l~~~l~~  392 (397)
T 2zyj_A          337 --AEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYA-TL-DREGIAEGVRRLGRALKG  392 (397)
T ss_dssp             --HHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECS-SS-CHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcC-CC-CHHHHHHHHHHHHHHHHH
Confidence              2457788888885544322221   11579999944 33 899999999999987653

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.93  E-value=3.6e-25  Score=218.48  Aligned_cols=306  Identities=14%  Similarity=0.122  Sum_probs=205.6

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      ..++++.+++++|.+  .+++++|||+|+..++.++.-.             ||+ .|+++..+|+++..++...|.   
T Consensus        58 ~~~l~~~la~~~~~~--~~i~~~~gt~al~~~l~~~~~~-------------~gd-~vl~~~~~~~~~~~~~~~~g~---  118 (391)
T 3dr4_A           58 IVEFEKAFADYCGVK--HAIACNNGTTALHLALVAMGIG-------------PGD-EVIVPSLTYIASANSVTYCGA---  118 (391)
T ss_dssp             HHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHTCC-------------TTC-EEEEESSSCTHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCCC-------------CcC-EEEECCCchHHHHHHHHHCCC---
Confidence            345566688888887  5899999999999999887211             445 788999999999999999988   


Q ss_pred             CeEEeeCC-CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccccc
Q psy12303        194 NCVEVPSD-KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKK  272 (480)
Q Consensus       194 ~v~~v~~~-~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~  272 (480)
                      +++.++++ +++.+|+++|+++++++      +++|++   +|++|.+.|+++|.++|+++|+++|+|++|+.+....+.
T Consensus       119 ~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~~---~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~  189 (391)
T 3dr4_A          119 TPVLVDNDPRTFNLDAAKLEALITPR------TKAIMP---VHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGK  189 (391)
T ss_dssp             EEEEECBCTTTCSBCGGGSGGGCCTT------EEEECC---BCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTE
T ss_pred             EEEEEecCccccCcCHHHHHHhcCCC------ceEEEE---ECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCe
Confidence            88999998 56899999999988754      777774   568999999999999999999999999999976654432


Q ss_pred             ccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHH
Q psy12303        273 YRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL  352 (480)
Q Consensus       273 ~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~  352 (480)
                      .    ...+.++++++++.||++++ ...|+++.+++................ ..    .+    +....+..+....+
T Consensus       190 ~----~~~~~di~~~S~s~~K~l~~-g~gg~~~~~~~~~~~~~~~~~~~g~~~-~~----~~----~~~~~g~~~~~~~l  255 (391)
T 3dr4_A          190 K----SGSLGDCATFSFFGNAIITT-GEGGMITTNDDDLAAKMRLLRGQGMDP-NR----RY----WFPIVGFNYRMTNI  255 (391)
T ss_dssp             E----TTSSSSEEEEECBTTSSSCC-BSCEEEEESCHHHHHHHHHHHBTTCCT-TS----TT----CCSSCCCBCBCCHH
T ss_pred             e----ecccCCEEEEECCCCCcCCc-CCeEEEEECCHHHHHHHHHHHhcCCCC-CC----cc----cccccccccCCCHH
Confidence            1    11111355566668899986 446677766654443322111000000 00    00    00011222333344


Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC--Cc---ee--EEEEEeecCccCCCchhhHHHHhhhhh
Q psy12303        353 WLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE--PE---MV--NVSFWYLPTRVRNMPHEKRLNILGEIT  425 (480)
Q Consensus       353 ~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~--~~---~~--~v~f~~~~~~~~~~~~~~~~~~l~~~~  425 (480)
                      .+++.....+++++..++..++++++.+.|.+ . ++++...  +.   ..  .+.+... .. .+.+           .
T Consensus       256 ~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~i~~~-~~-~~~~-----------~  320 (391)
T 3dr4_A          256 QAAIGLAQLERVDEHLAARERVVGWYEQKLAR-L-GNRVTKPHVALTGRHVFWMYTVRLG-EG-LSTT-----------R  320 (391)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGG-G-TTSEECCCCCTTSCCCCSSEEEEEC-SS-CSSC-----------H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C-CccccCcCCCCCCcceeEEEEEEEC-Cc-cchh-----------H
Confidence            44444444567788899999999999999999 6 8877654  21   11  2333322 10 0110           2


Q ss_pred             HHHHHHHHhcccEEEeee-e------e-----CC-------cccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        426 PILKGRMMQAGTMMVGYQ-P------L-----ND-------LPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       426 ~~i~~~l~~~g~~~~~~~-~------~-----~~-------~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      .++.+.|.++|+.+.... +      +     ..       ....+|++ +++.+|++||++++++|++++
T Consensus       321 ~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~-~~~~~t~edi~~~~~~l~~~l  390 (391)
T 3dr4_A          321 DQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLP-THAGLTEADIDRVIAALDQVL  390 (391)
T ss_dssp             HHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEEC-CCTTCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEcc-CCCCCCHHHHHHHHHHHHHHh
Confidence            467788888885543221 0      0     00       13689999 899999999999999999875

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.93  E-value=5.2e-24  Score=207.75  Aligned_cols=291  Identities=8%  Similarity=-0.013  Sum_probs=208.4

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++++++++|.+++++++|+|||+|+..++.++                  + .|+++..+|.++...+...|.   +
T Consensus        64 ~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~------------------d-~vi~~~~~~~~~~~~~~~~g~---~  121 (361)
T 3ftb_A           64 RRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF------------------E-KILIIVPSYAEYEINAKKHGV---S  121 (361)
T ss_dssp             HHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC------------------S-EEEEEESCCTHHHHHHHHTTC---E
T ss_pred             HHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc------------------C-cEEEecCChHHHHHHHHHcCC---e
Confidence            45677788888998889999999999999888655                  1 678888899999999999988   8


Q ss_pred             eEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        195 CVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       195 v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                      ++.+|.++++.+++++|++++++       +++|++++++|++|.+.|   +++|.++|++||+++|+|++|+.+... .
T Consensus       122 ~~~~~~~~~~~~~~~~l~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~  193 (361)
T 3ftb_A          122 VVFSYLDENMCIDYEDIISKIDD-------VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-P  193 (361)
T ss_dssp             EEEEECCTTSCCCHHHHHHHTTT-------CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-T
T ss_pred             EEEeecCcccCCCHHHHHHhccC-------CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-c
Confidence            89999998888999999888864       668899999999999976   667788888999999999999877653 1


Q ss_pred             cccCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCch
Q psy12303        272 KYRHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIF  350 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l  350 (480)
                      ....-...+.....+++.|++|.++ .+.++|++++.+++...........+                       ..+.+
T Consensus       194 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~  250 (361)
T 3ftb_A          194 SSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNPW-----------------------NINCF  250 (361)
T ss_dssp             TSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSCTT-----------------------CSCHH
T ss_pred             ccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCCCC-----------------------CCCHH
Confidence            1110011112234466779999998 44677888767776665543222111                       02233


Q ss_pred             HHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeE-EecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHH
Q psy12303        351 KLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFY-LILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPIL  428 (480)
Q Consensus       351 ~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~-~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i  428 (480)
                      ..++....+ ..+.+++..++..++++++.+.|++ +++++ +. ++..+.+.+.+. . ..              ..++
T Consensus       251 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~-~~~~~~~~~~~~-~-~~--------------~~~l  312 (361)
T 3ftb_A          251 AEMAAINCLKDTNYIEESLLWIKKERKRFIEELNK-IGFIKRVF-SPHANFVLCRLE-N-IS--------------GEKL  312 (361)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH-SSSEEEEE-CCSSSEEEEEES-S-SC--------------HHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh-CCCCceec-CCCCeEEEEEcC-C-CC--------------HHHH
Confidence            444444433 2466788889999999999999999 88998 64 555555555432 1 11              2467


Q ss_pred             HHHHHhcccEEEeeeeeCCc-ccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        429 KGRMMQAGTMMVGYQPLNDL-PNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       429 ~~~l~~~g~~~~~~~~~~~~-~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      .+.|.++|+.+.....+.+. .+++|+++ +   ++++++++++.|+++.+.+
T Consensus       313 ~~~l~~~gi~v~~g~~~~~~~~~~iRis~-~---~~~~~~~l~~~l~~~~~~l  361 (361)
T 3ftb_A          313 YDSLLKEDIVIRRCCNFIGLDDSFVRFAI-K---DEKKNTKFLRALKGVENNL  361 (361)
T ss_dssp             HHHHHTTTEECEECTTSTTCCTTEEEEEC-C---CHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCeEEeeCccCCCCCCCEEEEEc-C---CHHHHHHHHHHHHHHHhcC
Confidence            78888887544332222111 57999994 3   8899999999999887654

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.93  E-value=7.4e-25  Score=216.83  Aligned_cols=303  Identities=10%  Similarity=0.045  Sum_probs=205.3

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++.+++++|.+  .+++++|||+|+..++.+++-.             ||+ .|+++..+|+++..++...|.   +
T Consensus        66 ~~l~~~la~~~~~~--~~v~~~~Gt~a~~~~l~~~~~~-------------~gd-~vl~~~~~~~~~~~~~~~~g~---~  126 (399)
T 2oga_A           66 EGFEAEFAAYCETD--HAVGVNSGMDALQLALRGLGIG-------------PGD-EVIVPSHTYIASWLAVSATGA---T  126 (399)
T ss_dssp             HHHHHHHHHHTTSS--EEEEESCHHHHHHHHHHHTTCC-------------TTC-EEEEESSSCTHHHHHHHHTTC---E
T ss_pred             HHHHHHHHHHHCCC--eEEEecCHHHHHHHHHHHhCCC-------------CcC-EEEECCCccHHHHHHHHHCCC---E
Confidence            45566788889886  4889999999999998776211             445 788888999999999999888   7


Q ss_pred             eEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccc
Q psy12303        195 CVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       195 v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~  273 (480)
                      ++.+|.++ ++.+|+++|+++++++      +++|++   +|++|.+.|+++|.++|+++|+++|+|++|+.+... +..
T Consensus       127 ~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~---~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~  196 (399)
T 2oga_A          127 PVPVEPHEDHPTLDPLLVEKAITPR------TRALLP---VHLYGHPADMDALRELADRHGLHIVEDAAQAHGARY-RGR  196 (399)
T ss_dssp             EEEECBCSSSSSBCHHHHHHHCCTT------EEEECC---BCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEE-TTE
T ss_pred             EEEEecCCCCCCcCHHHHHHhcCCC------CeEEEE---eCCcCCccCHHHHHHHHHHcCCEEEEECcccccCcc-CCe
Confidence            88999876 5789999999998754      777774   578999999999999999999999999999876442 111


Q ss_pred             cCcccCCCCCCccceeCcc--ccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchH
Q psy12303        274 RHPRLTGIERADSVTWNPH--KLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFK  351 (480)
Q Consensus       274 ~~~~~~~~~~~D~~~~s~h--K~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~  351 (480)
                      ..   ..  ..|++++|+|  |+++.|..+|++++++++...........   +...    .+..  .....+.+...+.
T Consensus       197 ~~---~~--~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~---g~~~----~~~~--~~~g~~~~~~~~~  262 (399)
T 2oga_A          197 RI---GA--GSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNY---GSRQ----KYSH--ETKGTNSRLDEMQ  262 (399)
T ss_dssp             ET---TC--TTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBT---TCSS----TTCC--CSCCCBCCCCHHH
T ss_pred             ec---cc--ccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhc---Cccc----cccc--cccccCCCcCHHH
Confidence            11   11  3589999985  99986445677776656554433211000   0000    0000  0011112345555


Q ss_pred             HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEE---EEeecCccCCCchhhHHHHhhhhhHHH
Q psy12303        352 LWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVS---FWYLPTRVRNMPHEKRLNILGEITPIL  428 (480)
Q Consensus       352 ~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~---f~~~~~~~~~~~~~~~~~~l~~~~~~i  428 (480)
                      +++.+..  .+.+++..++..++++++.+.|.+ ++++++...|.....+   |......                ..++
T Consensus       263 ~a~~~~~--l~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~----------------~~~l  323 (399)
T 2oga_A          263 AAVLRIR--LAHLDSWNGRRSALAAEYLSGLAG-LPGIGLPVTAPDTDPVWHLFTVRTER----------------RDEL  323 (399)
T ss_dssp             HHHHHHH--HHTHHHHHHHHHHHHHHHHHHTTT-CTTCBCCCCCTTEECCCSSEEEECSS----------------HHHH
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcc-CCCccccCCCCCCcceeEEEEEECCC----------------HHHH
Confidence            5555544  344566778888899999999999 8898875444333322   2211100                2356


Q ss_pred             HHHHHhcccEEEeeeeeC----------C------------cccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        429 KGRMMQAGTMMVGYQPLN----------D------------LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       429 ~~~l~~~g~~~~~~~~~~----------~------------~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      .+.|.+.|+.+.......          +            ..+++|++ ++..+|++||++++++|+++++++
T Consensus       324 ~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~-~~~~~t~edi~~~~~~l~~~~~~l  396 (399)
T 2oga_A          324 RSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLP-IGPHLERPQALRVIDAVREWAERV  396 (399)
T ss_dssp             HHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEEC-CSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEcc-CCCCCCHHHHHHHHHHHHHHHHHh
Confidence            777878885443211000          0            02689999 888999999999999999987653

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.93  E-value=4.4e-24  Score=207.88  Aligned_cols=287  Identities=11%  Similarity=0.087  Sum_probs=201.4

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC-ceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG-QLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g-~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      .++++.+++++|.+++++++|+|+|+++..++.++.+              || + .|+++.++|.++..+++..|.   
T Consensus        61 ~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~~--------------~g~d-~Vl~~~p~~~~~~~~~~~~g~---  122 (356)
T 1fg7_A           61 KAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCE--------------PGKD-AILYCPPTYGMYSVSAETIGV---  122 (356)
T ss_dssp             HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCC--------------TTTC-EEEECSSSCTHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHhC--------------CCCC-EEEEeCCChHHHHHHHHHcCC---
Confidence            3566778888899878899999999999999987743              45 4 788999999999999999888   


Q ss_pred             CeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHH--cCcEEEeeccccccccccc
Q psy12303        194 NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQK--YNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       194 ~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~--~~~~l~vD~a~~~~~~~~~  271 (480)
                      +++.+|.++++.+|+++|+++++ +      +++|++++++||||.+.|.+++.++++.  +|+++++|++|+.+....+
T Consensus       123 ~~~~v~~~~~~~~d~~~l~~~i~-~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~  195 (356)
T 1fg7_A          123 ECRTVPTLDNWQLDLQGISDKLD-G------VKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQAS  195 (356)
T ss_dssp             EEEECCCCTTSCCCHHHHHTSCT-T------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGC
T ss_pred             EEEEeeCCCCCCCCHHHHHHHhc-C------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCCEEEEEccchhhcCCCc
Confidence            78889988778899999998886 3      8999999999999999886555554443  8999999999997652111


Q ss_pred             cccCcccCCCCCCccceeCccccCCC-cccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCch
Q psy12303        272 KYRHPRLTGIERADSVTWNPHKLMGT-LLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIF  350 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l  350 (480)
                      ..   .+....+.++++.+++|+++. +.++|++++ +++...........|                       ....+
T Consensus       196 ~~---~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~-----------------------~~~~~  248 (356)
T 1fg7_A          196 LA---GWLAEYPHLAILRTLSKAFALAGLRCGFTLA-NEEVINLLMKVIAPY-----------------------PLSTP  248 (356)
T ss_dssp             SG---GGTTTCTTEEEEEESSSTTCCGGGCCEEEEE-CHHHHHHHHHHSCSS-----------------------CSCHH
T ss_pred             HH---HHHhhCCCEEEEecchHhhcCchhhhEEEEe-CHHHHHHHHHhcCCC-----------------------CCCHH
Confidence            00   111111456788899999974 356899887 445544332211111                       02344


Q ss_pred             HHHHHHHHhcHHH---HHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHH
Q psy12303        351 KLWLQWRAKGDEG---FEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPI  427 (480)
Q Consensus       351 ~~~~~l~~~g~~~---~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~  427 (480)
                      ...++...+...+   +++..++..++++++.+.|++ ++++..+.++....+.+.+ + .                ..+
T Consensus       249 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~-~-~----------------~~~  309 (356)
T 1fg7_A          249 VADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKE-IPCVEQVFDSETNYILARF-K-A----------------SSA  309 (356)
T ss_dssp             HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTEEEECCCSSSEEEEEE-T-T----------------HHH
T ss_pred             HHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHh-CCCceEECCCCCeEEEEEC-C-C----------------HHH
Confidence            5555555554433   678888889999999999999 7765333444444443332 2 1                235


Q ss_pred             HHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        428 LKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       428 i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      +.+.|.+.|+.+...+...+..+++|+++ .   +++|+++++++|+++
T Consensus       310 l~~~L~~~gI~v~~~g~~~~~~~~iRis~-~---~~~e~~~~~~~l~~~  354 (356)
T 1fg7_A          310 VFKSLWDQGIILRDQNKQPSLSGCLRITV-G---TREESQRVIDALRAE  354 (356)
T ss_dssp             HHHHHHHTTEECEECTTSTTCTTEEEEEC-C---CHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCEEEEECCCCCCCCCeEEEEe-C---CHHHHHHHHHHHHhh
Confidence            67778788855433133233246999994 3   689999999999875

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.93  E-value=1.5e-24  Score=213.59  Aligned_cols=294  Identities=16%  Similarity=0.129  Sum_probs=201.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG  191 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~  191 (480)
                      ....++++.+++++|.+  +.+++++||+|+..++.++.+              ||+ .|+++...|.++..++...|. 
T Consensus        84 ~~~~~l~~~la~~~g~~--~~i~~~sGt~a~~~~~~~~~~--------------~gd-~v~~~~~~~~~~~~~~~~~g~-  145 (384)
T 1bs0_A           84 VVHQALEEELAEWLGYS--RALLFISGFAANQAVIAAMMA--------------KED-RIAADRLSHASLLEAASLSPS-  145 (384)
T ss_dssp             HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHCC--------------TTC-EEEEETTCCHHHHHHHHTSSS-
T ss_pred             HHHHHHHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHhCC--------------CCc-EEEEcccccHHHHHHHHHcCC-
Confidence            45567788899999986  367777779999998877643              445 788999999999999998887 


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                        +++.+|.     +|+++|++++++.   ...+++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+.+.-.
T Consensus       146 --~~~~~~~-----~d~~~l~~~l~~~---~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~  215 (384)
T 1bs0_A          146 --QLRRFAH-----NDVTHLARLLASP---CPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQ  215 (384)
T ss_dssp             --EEEEECT-----TCHHHHHHHHHSC---CSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGG
T ss_pred             --CEEEeCC-----CCHHHHHHHHHhc---CCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCC
Confidence              7778874     4899999988753   11378999999999999999999999999999999999999986643200


Q ss_pred             cccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchH
Q psy12303        272 KYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFK  351 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~  351 (480)
                      ....+...+. .+|+++.|+||+++ |.| |+++++ ++...........|...                   .....+.
T Consensus       216 ~~~~~~~~~~-~~di~~~s~sK~~~-~~G-G~~~~~-~~~~~~l~~~~~~~~~~-------------------~~~~~~~  272 (384)
T 1bs0_A          216 GRGSCWLQKV-KPELLVVTFGKGFG-VSG-AAVLCS-STVADYLLQFARHLIYS-------------------TSMPPAQ  272 (384)
T ss_dssp             GCCHHHHTTC-CCSEEEEESSSTTS-SCC-EEEEEC-HHHHHHHHHHCHHHHSS-------------------BCCCHHH
T ss_pred             CCchHHhcCC-CCcEEEeeccchhh-ccC-cEEEeC-HHHHHHHHHhchhhhcC-------------------CCCCHHH
Confidence            0000011122 57899999999998 555 877764 55544332211112110                   0112222


Q ss_pred             ---HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHH
Q psy12303        352 ---LWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPIL  428 (480)
Q Consensus       352 ---~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i  428 (480)
                         +..+++.+.....++..++..++++++.+.|++ . ++++. ++....+.+.+ +..            ..  ..++
T Consensus       273 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~~~~~~~~~-~~~------------~~--~~~l  334 (384)
T 1bs0_A          273 AQALRASLAVIRSDEGDARREKLAALITRFRAGVQD-L-PFTLA-DSCSAIQPLIV-GDN------------SR--ALQL  334 (384)
T ss_dssp             HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-S-SCEEC-SCCSSBCCEEE-ESH------------HH--HHHH
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh-c-CCccc-CCCCCEEEEEe-CCH------------HH--HHHH
Confidence               233444332114567888999999999999999 5 78875 34444444433 211            00  2457


Q ss_pred             HHHHHhcccEEEeeeeeCC---cccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        429 KGRMMQAGTMMVGYQPLND---LPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       429 ~~~l~~~g~~~~~~~~~~~---~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      .+.|.++|+. +.+....+   ..+++|++ ++..++++++++++++|+++
T Consensus       335 ~~~l~~~gi~-v~~~~~~~~~~~~~~~Ri~-~~~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          335 AEKLRQQGCW-VTAIRPPTVPAGTARLRLT-LTAAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             HHHHHHTTEE-CCEECTTSSCTTCEEECCB-CCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCcE-EEeecCCCCCCCCceEEEE-EcCCCCHHHHHHHHHHHHhh
Confidence            7788888744 44332221   14799999 77788999999999999875

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.93  E-value=9.8e-25  Score=216.94  Aligned_cols=328  Identities=11%  Similarity=0.058  Sum_probs=214.8

Q ss_pred             HHHHHHHHcCcC-CcchhcChhhHHHHHHHHHHHHHHhCC--CC-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCc
Q psy12303         89 AGEWLIATANTN-MFTYEIAPVFILMETVVLEKMRQIIGW--QG-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSA  164 (480)
Q Consensus        89 ~~~~l~~~~~~~-~~~~~~~~~~~~~e~~~~~~la~~~g~--~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~  164 (480)
                      +.+.+...+... ...|...++..++++.+.+++.+.+|.  ++ .++++|+|||+|+..++.++..             
T Consensus        55 v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~-------------  121 (412)
T 2x5d_A           55 IVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLD-------------  121 (412)
T ss_dssp             HHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCC-------------
T ss_pred             HHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCC-------------
Confidence            335555544332 234544555678888888888888886  44 5899999999999999988743             


Q ss_pred             cCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCC--CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC
Q psy12303        165 IKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKR--GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP  242 (480)
Q Consensus       165 ~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~--~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~  242 (480)
                       ||+ .|+++.++|+++...+...|.   +++.+|.+++  +.+|+++|+++++++      +++|++++++|++|.+.|
T Consensus       122 -~gd-~Vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~l~~p~nptG~~~~  190 (412)
T 2x5d_A          122 -HGD-TILVPNPSYPIHIYGAVIAGA---QVRSVPLVPGIDFFNELERAIRESIPK------PRMMILGFPSNPTAQCVE  190 (412)
T ss_dssp             -TTC-EEEEEESCCHHHHHHHHHHTC---EEEEEECSTTSCHHHHHHHHHHTEESC------CSEEEEESSCTTTCCCCC
T ss_pred             -CCC-EEEEcCCCchhHHHHHHHcCC---EEEEeecCCccCCCCCHHHHHHhcccC------ceEEEECCCCCCCCCcCC
Confidence             445 788888999999999999888   7888998764  347888898887633      788889999999999976


Q ss_pred             ---hHHHHHHHHHcCcEEEeeccccccccccccccC-cccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhc
Q psy12303        243 ---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH-PRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQ  317 (480)
Q Consensus       243 ---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~  317 (480)
                         +++|.++|++||+++|+|++|+.+.+....... ..+.+..+.|+++.++||+++ .+.++|++++ ++........
T Consensus       191 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~l~~  269 (412)
T 2x5d_A          191 LDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVG-NPELVSALAR  269 (412)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEE-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEc-CHHHHHHHHH
Confidence               688999999999999999999987642211100 011111256888999999997 4456899887 4444443321


Q ss_pred             CCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC
Q psy12303        318 MSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP  395 (480)
Q Consensus       318 ~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~  395 (480)
                      ... +..                    .....+..+++...+  +.+.++++.++..++++++.+.|++ . +++++ ++
T Consensus       270 ~~~-~~~--------------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~  325 (412)
T 2x5d_A          270 IKS-YHD--------------------YGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLRE-A-GWMVE-NP  325 (412)
T ss_dssp             HHH-HHC--------------------CCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHH-H-TCCCC-CC
T ss_pred             HHh-hhc--------------------cCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCEec-CC
Confidence            100 000                    001222333333322  3466788889999999999999998 5 77764 45


Q ss_pred             ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHH
Q psy12303        396 EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEM  473 (480)
Q Consensus       396 ~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l  473 (480)
                      ..+.+++...+.....         .+  ..++.+.|.+ .|+.+.....+.. ..+++|+++ +.  ++++|+++++.|
T Consensus       326 ~~g~~~~~~~~~~~~~---------~~--~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~-~~--~~~~l~~~l~~l  391 (412)
T 2x5d_A          326 KASMYVWAKIPEPYAH---------LG--SLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFAL-IE--NRDRLRQAVRGI  391 (412)
T ss_dssp             SBSSEEEEECCTTTGG---------GC--HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEEC-CS--CHHHHHHHHHHH
T ss_pred             CeeeEEEEEcCCccCC---------CC--HHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEe-cC--CHHHHHHHHHHH
Confidence            5554444323322100         00  2356677765 5754433222211 147999994 33  899999999999


Q ss_pred             HHhhcc
Q psy12303        474 DRLGHD  479 (480)
Q Consensus       474 ~~~~~~  479 (480)
                      ++++++
T Consensus       392 ~~~l~~  397 (412)
T 2x5d_A          392 KAMFRA  397 (412)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            987653

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.93  E-value=2.1e-24  Score=214.34  Aligned_cols=296  Identities=13%  Similarity=0.091  Sum_probs=201.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG  191 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~  191 (480)
                      ....++++++++++|.+.  .+++++||+||..++.++.+              ||+ .|+++..+|+++..++...|. 
T Consensus       104 ~~~~~l~~~la~~~g~~~--~i~~~sGt~a~~~~l~~~~~--------------~gd-~Vl~~~~~~~~~~~~~~~~g~-  165 (409)
T 3kki_A          104 YDKPMIEKRLAKFTGFDE--CLLSQSGWNANVGLLQTICQ--------------PNT-NVYIDFFAHMSLWEGARYANA-  165 (409)
T ss_dssp             TTSCHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHCC--------------TTC-EEEEETTSCHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHhCCCe--EEEecchHHHHHHHHHHhcC--------------CCC-EEEECCCcCHHHHHHHHHcCC-
Confidence            444567788999999875  57778889999999887754              445 888999999999999999887 


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                        +++.++.     +|+++|++++++..     +++|++++++|++|.+.|+++|.++|++||+++|+|++|+++.+...
T Consensus       166 --~~~~~~~-----~d~~~le~~l~~~~-----~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~  233 (409)
T 3kki_A          166 --QAHPFMH-----NNCDHLRMLIQRHG-----PGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPN  233 (409)
T ss_dssp             --EEEEECT-----TCHHHHHHHHHHHC-----SCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGG
T ss_pred             --eEEEecC-----CCHHHHHHHHHhcC-----CeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCC
Confidence              6666664     58999999998741     68999999999999999999999999999999999999987654211


Q ss_pred             cccCcccCCC-CCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCch
Q psy12303        272 KYRHPRLTGI-ERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIF  350 (480)
Q Consensus       272 ~~~~~~~~~~-~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l  350 (480)
                      ........++ .++|+++.+++|+++.+  .|+++. ++............+.....                .......
T Consensus       234 g~~~~~~~~~~~~~di~~~s~sK~~~~~--gg~v~~-~~~~~~~~~~~~~~~~~~~~----------------~~~~~~a  294 (409)
T 3kki_A          234 GAGLLAELGLTREVHFMTASLAKTFAYR--AGAIWC-NNEVNRCVPFISYPAIFSST----------------LLPYEAA  294 (409)
T ss_dssp             GCCHHHHHTCGGGCSEEEEESSSTTCSS--CEEEEE-SSSGGGTHHHHCHHHHHSBC----------------CCHHHHH
T ss_pred             CCcchhhcCCCCCCCEEEeecchhhCCC--ceEEEE-CHHHHHHHHHhCcCccccCC----------------CcHHHHH
Confidence            1000001111 36789999999999865  366654 44444332221122211100                0001122


Q ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHH
Q psy12303        351 KLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKG  430 (480)
Q Consensus       351 ~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~  430 (480)
                      ++..+++.+  +..+++.++..++++++.+.|++ . ++++.  +....+.+.+....               ...++.+
T Consensus       295 a~~aal~~~--~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~--~~~~~~~~~~~~~~---------------~~~~~~~  353 (409)
T 3kki_A          295 GLETTLEII--ESADNRRQHLDRMARKLRIGLSQ-L-GLTIR--SESQIIGLETGDER---------------NTEKVRD  353 (409)
T ss_dssp             HHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHT-T-TCCCC--CSSSEEEEEEESHH---------------HHHHHHH
T ss_pred             HHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHH-c-CCccC--CCCCEEEEEeCCHH---------------HHHHHHH
Confidence            233333332  22256778888999999999999 4 77764  34444544432110               0235678


Q ss_pred             HHHhcccEEEeeee---eCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        431 RMMQAGTMMVGYQP---LNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       431 ~l~~~g~~~~~~~~---~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .|.++|+++.....   ..+ .+++|++ ++..+|++||++++++|+++++.
T Consensus       354 ~L~~~Gv~v~~~~~~~~~~~-~~~iRi~-~~~~~t~e~i~~~~~~l~~~l~~  403 (409)
T 3kki_A          354 YLESNGVFGSVFCRPATSKN-KNIIRLS-LNSDVNDEQIAKIIEVCSDAVNY  403 (409)
T ss_dssp             HHHHTTEECEEECTTSSCTT-CEEEEEE-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCceEeeeCCCCcCCC-CcEEEEE-ccCCCCHHHHHHHHHHHHHHHhc
Confidence            88888855332211   112 5799999 77889999999999999988753

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.93  E-value=4.3e-24  Score=212.06  Aligned_cols=304  Identities=13%  Similarity=0.090  Sum_probs=199.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH-cCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV-CGL  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~-~g~  190 (480)
                      ....++++++++++|.+  ++++|+|||+|+..++.++..              +|+ .|+++..+|.++...+.. +..
T Consensus        56 ~~~~~l~~~la~~~g~~--~~~~~~~gt~a~~~al~~l~~--------------~gd-~vi~~~~~~~~~~~~~~~~~~~  118 (412)
T 2cb1_A           56 PTAKALEERLKALEGAL--EAVVLASGQAATFAALLALLR--------------PGD-EVVAAKGLFGQTIGLFGQVLSL  118 (412)
T ss_dssp             HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTCC--------------TTC-EEEEETTCCHHHHHHHHHTTTT
T ss_pred             hHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHhC--------------CCC-EEEEeCCCchhHHHHHHHHHHH
Confidence            44556778899999986  599999999999999987632              445 788888999987776543 221


Q ss_pred             CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccc
Q psy12303        191 GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLS  270 (480)
Q Consensus       191 ~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~  270 (480)
                      ...+++.++.      |+++|+++++++      +++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+....
T Consensus       119 ~g~~~~~~~~------~~~~l~~~i~~~------~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~  186 (412)
T 2cb1_A          119 MGVTVRYVDP------EPEAVREALSAK------TRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALC  186 (412)
T ss_dssp             TTCEEEEECS------SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSC
T ss_pred             cCCEEEEECC------CHHHHHHHhccC------CeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccC
Confidence            1227777775      388899888764      8999999999999999999999999999999999999999873222


Q ss_pred             ccccCcccCCCCCCccceeCccccCCCccc-ceEEEEeCchhh-HhhhcCCcccccccc-------cccCcccCCCCccc
Q psy12303        271 KKYRHPRLTGIERADSVTWNPHKLMGTLLQ-CSTIHFKQDGLL-ISCNQMSAEYLFMQD-------KLYDVRYDTGDKVI  341 (480)
Q Consensus       271 ~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~-~g~~~~~~~~~~-~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~  341 (480)
                      .....       ++|+++.|+||++++|.+ .|++++.+.... .......++......       .........+.. .
T Consensus       187 ~~~~~-------~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~-~  258 (412)
T 2cb1_A          187 RPLAW-------GAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGL-S  258 (412)
T ss_dssp             CGGGG-------TCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHT-T
T ss_pred             Ccccc-------CCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHH-H
Confidence            22223       789999999999988765 788877664321 000000000000000       000000000000 0


Q ss_pred             cCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC-----------------ceeEEEEEe
Q psy12303        342 QCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP-----------------EMVNVSFWY  404 (480)
Q Consensus       342 ~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~-----------------~~~~v~f~~  404 (480)
                      ..+........|+.+..  .+.+.+++++..++++++.+.|.+ .+++.++..|                 ..++++|.+
T Consensus       259 ~~g~~~~~~~a~~~~~~--l~~l~~~~~~~~~~~~~l~~~L~~-~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~  335 (412)
T 2cb1_A          259 LCGMALSPFNAYLLFQG--LETVALRVARMSETARFLAERLQG-HPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL  335 (412)
T ss_dssp             TTCCCCCHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHHHHT-CTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC
T ss_pred             hcCCCCChHHhHHHHcC--CchHHHHHHHHHHHHHHHHHHHHc-CCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe
Confidence            01222345566666544  344567777888999999999999 8898855222                 345677765


Q ss_pred             ecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeee--------eeC----------------Cc-ccEEEEecccC
Q psy12303        405 LPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQ--------PLN----------------DL-PNFFRNIISSA  459 (480)
Q Consensus       405 ~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~--------~~~----------------~~-~~~~R~~~~~~  459 (480)
                       . .                ...+.+.+.+.|.+. ...        ...                +. .+.+|+| .+.
T Consensus       336 -~-~----------------~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s-~g~  395 (412)
T 2cb1_A          336 -G-D----------------LERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVS-VGL  395 (412)
T ss_dssp             -S-S----------------HHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEE-CCS
T ss_pred             -C-C----------------HHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEE-ecc
Confidence             2 1                123344444555443 221        000                10 4799999 889


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy12303        460 AVTEGDIDFLLTEMDR  475 (480)
Q Consensus       460 ~~t~~di~~~~~~l~~  475 (480)
                      .+++++|+.++++|++
T Consensus       396 ~~~~~~i~~l~~al~~  411 (412)
T 2cb1_A          396 EDPLDLLALFEEALEA  411 (412)
T ss_dssp             SCHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999999875

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.93  E-value=5.6e-24  Score=210.67  Aligned_cols=305  Identities=14%  Similarity=0.092  Sum_probs=202.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG  191 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~  191 (480)
                      ....++++.+++++|.+ ..+++++ |++++..++.++...            .||+ .|+++..+|+++..+++..|. 
T Consensus        91 ~~~~~l~~~la~~~~~~-~~i~~~s-G~~a~~~~~~~l~~~------------~~gd-~Vl~~~~~~~~~~~~~~~~g~-  154 (401)
T 2bwn_A           91 AYHRRLEAEIAGLHQKE-AALVFSS-AYNANDATLSTLRVL------------FPGL-IIYSDSLNHASMIEGIKRNAG-  154 (401)
T ss_dssp             HHHHHHHHHHHHHTTCS-EEEEESC-HHHHHHHHHHHHHHH------------STTC-EEEEETTCCHHHHHHHHHSCC-
T ss_pred             HHHHHHHHHHHHHhCCC-cEEEECC-cHHHHHHHHHHHhcC------------CCCC-EEEECchhhHHHHHHHHHcCC-
Confidence            44456778899999975 4566655 555888887765321            0445 888899999999999998887 


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                        +++.+|.+     |+++|+++++...  ..++++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+.+.-.
T Consensus       155 --~~~~v~~~-----d~~~le~~l~~~~--~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~  225 (401)
T 2bwn_A          155 --PKRIFRHN-----DVAHLRELIAADD--PAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPR  225 (401)
T ss_dssp             --CEEEECTT-----CHHHHHHHHHHSC--TTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTT
T ss_pred             --eEEEEcCC-----CHHHHHHHHHhhc--cCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCC
Confidence              88889875     8999999987421  02389999999999999999999999999999999999999996543100


Q ss_pred             cccCcccCCC-CCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCch
Q psy12303        272 KYRHPRLTGI-ERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIF  350 (480)
Q Consensus       272 ~~~~~~~~~~-~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l  350 (480)
                      ........++ +..|.++.+++|+++.|.  |+++. ++............+....                .+......
T Consensus       226 g~~~~~~~~~~~~~~i~~~s~sK~~~~~G--G~~~~-~~~~~~~l~~~~~~~~~~~----------------~~~~~~~~  286 (401)
T 2bwn_A          226 GAGVAERDGLMHRIDIFNGTLAKAYGVFG--GYIAA-SARMVDAVRSYAPGFIFST----------------SLPPAIAA  286 (401)
T ss_dssp             SCCHHHHHTCGGGCSEEEEESSSTTCSCC--EEEEE-CHHHHHHHHHHCHHHHTSB----------------CCCHHHHH
T ss_pred             CceeeeccCccccCcEEEeechhhccCCC--CEEec-CHHHHHHHHHhCcCceecC----------------CCCHHHHH
Confidence            0000001111 245788889999999643  66665 4444433221111111100                00001233


Q ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHH
Q psy12303        351 KLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKG  430 (480)
Q Consensus       351 ~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~  430 (480)
                      ++..+++.+...+++++.++..++++++.+.|++ . |++++ ++..+++++.+. ..            ..  ..++.+
T Consensus       287 a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~~~~~~~~~~-~~------------~~--~~~~~~  348 (401)
T 2bwn_A          287 GAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKA-L-GMPII-DHGSHIVPVVIG-DP------------VH--TKAVSD  348 (401)
T ss_dssp             HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBC-CCSSSCEEEECC-CH------------HH--HHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-C-CCccc-CCCCCeEEEEeC-Ch------------HH--HHHHHH
Confidence            4455566555556788889999999999999999 5 88775 455555555431 11            00  235667


Q ss_pred             HHH-hcccEEEeeeeeCCc---ccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        431 RMM-QAGTMMVGYQPLNDL---PNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       431 ~l~-~~g~~~~~~~~~~~~---~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      .|. +.|+. +.+....+.   .+++|++ ++..+|++||++++++|+++++++
T Consensus       349 ~L~~~~gi~-v~~~~~~~~~~~~~~iRis-~~~~~t~~~i~~~~~~l~~~~~~~  400 (401)
T 2bwn_A          349 MLLSDYGVY-VQPINFPTVPRGTERLRFT-PSPVHDLKQIDGLVHAMDLLWARC  400 (401)
T ss_dssp             HHHHHHCEE-CCEECTTTSCTTCCEEEEC-CCTTSCHHHHHHHHHHHHHHC---
T ss_pred             HHHhcCCEE-EeecCCCCCCCCCceEEEE-eeCCCCHHHHHHHHHHHHHHHHhc
Confidence            775 56744 433322221   2589999 778889999999999999987653

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.93  E-value=4.3e-25  Score=213.23  Aligned_cols=301  Identities=16%  Similarity=0.062  Sum_probs=203.6

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCC-CCeEE-CCChhHHHHHHHHHHHHhcCchhHhcCCCccCCc-eEEEecCCCchhHHH
Q psy12303        107 APVFILMETVVLEKMRQIIGWQG-GDSIL-APGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQ-LVMFTSDQCHYSVRS  183 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~-~~~~~-t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~-~~vl~~~~~h~s~~~  183 (480)
                      ++.+.++.+++++.+++++|+++ .+++| |+|||+|+..++.... .        |.     + .+|+.+..+|... .
T Consensus        45 ~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~-~--------~~-----~~~~i~~~~~~~~~~-~  109 (361)
T 3m5u_A           45 TKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA-L--------NG-----VCEYANTGVWTKKAI-K  109 (361)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-C--------SS-----CEEEEECSHHHHHHH-H
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-C--------CC-----eEEEEeCCHHHHHHH-H
Confidence            44566777889999999999964 57888 9999999999887653 1        11     2 1455555555433 3


Q ss_pred             HHHHcCCCCCCeEEeeCCCCCC--CCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeec
Q psy12303        184 CAAVCGLGTDNCVEVPSDKRGR--LIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDA  261 (480)
Q Consensus       184 ~~~~~g~~~~~v~~v~~~~~~~--~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~  261 (480)
                      .++..|.   ++..+++++++.  ++++. +  |+++      +++|.+++.+|.+|.+.|.     +++ +|+++|||+
T Consensus       110 ~a~~~G~---~v~~~~~~~~g~~~~~~~~-~--l~~~------t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~  171 (361)
T 3m5u_A          110 EAQILGV---NVKTVASSEESNFDHIPRV-E--FSDN------ADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDA  171 (361)
T ss_dssp             HHHHTTC---CEEEEEECTTTTSCSCCCC-C--CCTT------SSEEEEESEETTTTEECSS-----CCC-CSSCEEEEC
T ss_pred             HHHHcCC---ceEEEecccCcCCCcCChh-h--cCCC------CCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEc
Confidence            4455676   889999988774  56665 3  6554      8899999999999998552     344 499999999


Q ss_pred             cccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhc-CCccccccccc-ccCcccCCCCc
Q psy12303        262 AWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQ-MSAEYLFMQDK-LYDVRYDTGDK  339 (480)
Q Consensus       262 a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~-~~~~~l~~~~~-~~~~~~~~~~~  339 (480)
                      +++.+..+.+..         .+|++++++|||++ |.|+|+++++++. +..... ..+.++..... .....  ++  
T Consensus       172 ~q~~g~~~id~~---------~~d~~~~s~~K~~g-p~G~g~l~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~--~~--  236 (361)
T 3m5u_A          172 SSDFFSRKVDFS---------NIALFYGGVQKNAG-ISGLSCIFIRKDM-LERSKNKQIPSMLNYLTHAENQSL--FN--  236 (361)
T ss_dssp             GGGTTSSCCCCT---------TEEEEEEETTTTSS-CTTCEEEEEEHHH-HHHHHTCCCCGGGCHHHHHHTTTC--SS--
T ss_pred             ccccCCCCCCcc---------cCCEEEEechhccC-CCccEEEEEcHHH-HhhhcCCCCCceeehHHHhhcCCC--CC--
Confidence            999998877653         45899999999996 9999999998653 333322 22333211100 00000  11  


Q ss_pred             cccCCCC-CCchHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCCe-EEecCCc---eeEEEEEeec-CccCCC
Q psy12303        340 VIQCGRH-NDIFKLWLQWRAKGDE-GFEKQIDRLMELAEYMVKKIKSMPDKF-YLILEPE---MVNVSFWYLP-TRVRNM  412 (480)
Q Consensus       340 ~~~~~r~-~~~l~~~~~l~~~g~~-~~~~~~~~~~~l~~~l~~~l~~~~~g~-~~~~~~~---~~~v~f~~~~-~~~~~~  412 (480)
                          +-+ ....++..+++.+-.. |++++.++..++++++.+.|++ ++++ +++.++.   ..+++|.+.. ..    
T Consensus       237 ----Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~-~~g~~~~~~~~~~rs~~ivsf~~~~~~~----  307 (361)
T 3m5u_A          237 ----TPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDL-SNGFYKGHADKKDRSLMNVSFNIAKNKD----  307 (361)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHT-STTSEEESSCGGGBCSSEEEEEESSCTT----
T ss_pred             ----CccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-CCCeeeccCCHHHcCCeEEEEECCCchh----
Confidence                111 1344555666665556 7899999999999999999999 7766 6643332   2466775432 11    


Q ss_pred             chhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        413 PHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       413 ~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                              +   ..++...|.+.|+. +.. .... .+.+|+| .+.++|++||+++++.|+++.++
T Consensus       308 --------~---~~~~~~~L~~~gI~-~~~-g~~~-~g~iRiS-~~~~~t~edId~l~~al~~~~~~  359 (361)
T 3m5u_A          308 --------L---EPLFVKEAEEAGMI-GLK-GHRI-LGGIRAS-IYNALNLDQVKTLCEFMKEFQGK  359 (361)
T ss_dssp             --------H---HHHHHHHHHHTTEE-CCB-CCTT-TCSEEEE-CCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             --------h---hHHHHHHHHHCCCE-Eec-CCCc-cCeEEEE-ccCCCCHHHHHHHHHHHHHHHHh
Confidence                    1   12455667777743 332 2222 2569999 77889999999999999998753

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.93  E-value=3.3e-24  Score=213.36  Aligned_cols=319  Identities=12%  Similarity=0.044  Sum_probs=211.2

Q ss_pred             chhcChhhHHHHHHHHHHHHHHh------C--CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEec
Q psy12303        103 TYEIAPVFILMETVVLEKMRQII------G--WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTS  174 (480)
Q Consensus       103 ~~~~~~~~~~~e~~~~~~la~~~------g--~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~  174 (480)
                      .|.......++++.+.+++.+.+      |  .++.++++|+|+|+|+..++.++..              ||+ .|+++
T Consensus        70 ~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~--------------~gd-~vl~~  134 (416)
T 1bw0_A           70 GYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICD--------------AGD-YALVP  134 (416)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCC--------------TTC-EEEEE
T ss_pred             CcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCC--------------CCC-EEEEc
Confidence            34434456677777777776322      2  4567899999999999999988743              445 78888


Q ss_pred             CCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHH
Q psy12303        175 DQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADI  249 (480)
Q Consensus       175 ~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i  249 (480)
                      .++|+++..++...|.   +++.+|.++  ++.+|+++|++++++.      +++|++++++|++|.+.|   +++|.++
T Consensus       135 ~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~~~~l~~i~~~  205 (416)
T 1bw0_A          135 QPGFPHYETVCKAYGI---GMHFYNCRPENDWEADLDEIRRLKDDK------TKLLIVTNPSNPCGSNFSRKHVEDIVRL  205 (416)
T ss_dssp             ESCCTHHHHHHHHTTC---EEEEEEEEGGGTTEECHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred             CCCcHhHHHHHHHcCc---EEEEeecCcccCCCCCHHHHHHHhccC------CeEEEEeCCCCCCCcccCHHHHHHHHHH
Confidence            8899999999999888   788888764  3678999999988754      889999999999999998   9999999


Q ss_pred             HHHcCcEEEeeccccccccccc----cccCcccCCCC--CCccceeCccccCCCc-ccceEEEEeCc-hhhHhhhcCCcc
Q psy12303        250 CQKYNMWLHVDAAWGGGLLLSK----KYRHPRLTGIE--RADSVTWNPHKLMGTL-LQCSTIHFKQD-GLLISCNQMSAE  321 (480)
Q Consensus       250 ~~~~~~~l~vD~a~~~~~~~~~----~~~~~~~~~~~--~~D~~~~s~hK~~~~p-~~~g~~~~~~~-~~~~~~~~~~~~  321 (480)
                      |++||+++|+|++|+.+.+...    ...  .+..+.  ..++++.+++|+++.| ..+|+++++++ ............
T Consensus       206 ~~~~~~~li~De~~~~~~~~g~~~~~~~~--~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~  283 (416)
T 1bw0_A          206 AEELRLPLFSDEIYAGMVFKGKDPNATFT--SVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKR  283 (416)
T ss_dssp             HHHHTCCEEEECTTTTCBCCSSCTTCCCC--CTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHH
T ss_pred             HHHcCCEEEEEccccccccCCCCCCCCcc--CHHHccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHH
Confidence            9999999999999998543221    111  122221  2246677999998655 56899998775 222211100000


Q ss_pred             cccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEE
Q psy12303        322 YLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVS  401 (480)
Q Consensus       322 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~  401 (480)
                      +. ...           +   ........++..+++....+++++..++..++++++.+.|++ +|+++++ .|..+.++
T Consensus       284 ~~-~~~-----------~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~-~~~~~~~~  346 (416)
T 1bw0_A          284 VG-MLV-----------C---GPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE-CIGLAPT-MPRGAMYL  346 (416)
T ss_dssp             HH-HHH-----------T---CSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTT-STTEEEC-CCCBTTEE
T ss_pred             Hh-ccc-----------c---CCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccc-CCCeeEEE
Confidence            00 000           0   000011223333344334677888999999999999999999 8899875 34444443


Q ss_pred             E-EeecCccCC-CchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        402 F-WYLPTRVRN-MPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       402 f-~~~~~~~~~-~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      + .+......+ .+           ..++.+.|. +.|+.+.....+.. .+++|+++   .+++++|+++++.|.++++
T Consensus       347 ~~~~~~~~~~~~~~-----------~~~~~~~l~~~~gi~v~~g~~f~~-~~~iRis~---~~~~e~l~~~l~~l~~~l~  411 (416)
T 1bw0_A          347 MSRIDLEKYRDIKT-----------DVEFFEKLLEEENVQVLPGTIFHA-PGFTRLTT---TRPVEVYREAVERIKAFCQ  411 (416)
T ss_dssp             EEEECGGGBSSCCS-----------HHHHHHHHHHHHCEECEEGGGGTC-TTEEEEEC---CSCHHHHHHHHHHHHHHHH
T ss_pred             EEeCCHHHcCCCCC-----------HHHHHHHHHHHCCEEEecccccCC-CCeEEEEe---cCCHHHHHHHHHHHHHHHH
Confidence            3 332111100 00           234566664 67754433222222 57999994   3689999999999988765


Q ss_pred             c
Q psy12303        479 D  479 (480)
Q Consensus       479 ~  479 (480)
                      +
T Consensus       412 ~  412 (416)
T 1bw0_A          412 R  412 (416)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.93  E-value=7.9e-25  Score=217.04  Aligned_cols=309  Identities=12%  Similarity=0.107  Sum_probs=201.6

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHH-H-
Q psy12303        107 APVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS-C-  184 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~-~-  184 (480)
                      .+...++++++++++++++|.++. .+++++||+|+..++.++..              ||+ .|+++..+|+++.. . 
T Consensus        64 ~~~~~~l~~~~r~~la~~~g~~~~-~i~~~sGt~a~~~a~~~~~~--------------~gd-~Vl~~~~~~~~~~~~~~  127 (405)
T 2vi8_A           64 CEYVDIVEELARERAKQLFGAEHA-NVQPHSGAQANMAVYFTVLE--------------HGD-TVLGMNLSHGGHLTHGS  127 (405)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCSEE-ECCCSSHHHHHHHHHHHHCC--------------TTC-EEEEECGGGTCCTTTTC
T ss_pred             chHHHHHHHHHHHHHHHHhCCCce-EEEecCcHHHHHHHHHHhcC--------------CCC-EEEEecccccchhcccc
Confidence            355678888889999999999853 34455669999999988743              445 78888888887643 1 


Q ss_pred             -HHHcCCCCCCeEEeeCC-CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecc
Q psy12303        185 -AAVCGLGTDNCVEVPSD-KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAA  262 (480)
Q Consensus       185 -~~~~g~~~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a  262 (480)
                       +...|.+. .++.++++ .++.+|+++|++++++.     ++++|+++ + +..|...++++|.++|++||+++|+|++
T Consensus       128 ~~~~~g~~~-~~~~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~-~-~~~~~~~~l~~i~~l~~~~~~~li~Dea  199 (405)
T 2vi8_A          128 PVNFSGVQY-NFVAYGVDPETHVIDYDDVREKARLH-----RPKLIVAA-A-AAYPRIIDFAKFREIADEVGAYLMVDMA  199 (405)
T ss_dssp             TTSHHHHHS-EEEEECBCTTTCSBCHHHHHHHHHHH-----CCSEEEEC-C-SSCCSCCCHHHHHHHHHHHTCEEEEECT
T ss_pred             hhhhcccee-EEEecccccccCCcCHHHHHHHHHhc-----CCeEEEEe-C-CCCCccCCHHHHHHHHHHcCCEEEEEcc
Confidence             11223211 55667765 56889999999999863     16677764 3 2347777899999999999999999999


Q ss_pred             ccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcccc
Q psy12303        263 WGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQ  342 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  342 (480)
                      |+.+....+....    +++.+|+++.|+||++++|.| |+++++ ++...........+..                  
T Consensus       200 ~~~g~~~~~~~~~----~~~~~di~~~s~sK~~~g~~g-G~~~~~-~~~~~~l~~~~~~~~~------------------  255 (405)
T 2vi8_A          200 HIAGLVAAGLHPN----PVPYAHFVTTTTHKTLRGPRG-GMILCQ-EQFAKQIDKAIFPGIQ------------------  255 (405)
T ss_dssp             TTHHHHHTTSSCC----STTTCSEEEEESSSTTCCCSC-EEEEEC-HHHHHHHHHHHTTTTC------------------
T ss_pred             ccccccccCcCCC----ccccCCEEEEeccccCCCCCC-eEEEEc-HHHHHHHHhhhccccc------------------
Confidence            9965443322111    123679999999999987777 888865 4444332211111110                  


Q ss_pred             CCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC-ceeEEEEEeecCccCCCchhhHHHH
Q psy12303        343 CGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP-EMVNVSFWYLPTRVRNMPHEKRLNI  420 (480)
Q Consensus       343 ~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~  420 (480)
                      ++... ...++..++..+..++++++.++..++++++.+.|++ . |++++.++ ....+.+.+......          
T Consensus       256 ~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~----------  323 (405)
T 2vi8_A          256 GGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQN-E-GFTLVSGGTDNHLLLVDLRPQQLT----------  323 (405)
T ss_dssp             SSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEGGGSCSSSEEEEECGGGTCC----------
T ss_pred             CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-C-CCeEecCCCCceEEEEEccCCCCC----------
Confidence            01011 1222334454433467888999999999999999999 6 99987543 334444443211100          


Q ss_pred             hhhhhHHHHHHHHhcccEEEeeee----e-CCcccEEEEeccc---CCCCHHHHHHHHHHHHHhhcc
Q psy12303        421 LGEITPILKGRMMQAGTMMVGYQP----L-NDLPNFFRNIISS---AAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       421 l~~~~~~i~~~l~~~g~~~~~~~~----~-~~~~~~~R~~~~~---~~~t~~di~~~~~~l~~~~~~  479 (480)
                          ..++.+.|.+.|+.+.....    . ....+++|+++..   +.++++|+++++++|++++++
T Consensus       324 ----~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~  386 (405)
T 2vi8_A          324 ----GKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN  386 (405)
T ss_dssp             ----HHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred             ----HHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhc
Confidence                23566777777754333210    1 1114689999432   257899999999999988754

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.93  E-value=1.1e-23  Score=206.62  Aligned_cols=314  Identities=11%  Similarity=-0.019  Sum_probs=212.0

Q ss_pred             HHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccC
Q psy12303         89 AGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIK  166 (480)
Q Consensus        89 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~  166 (480)
                      +.+.+...+ .....|....+..++++++.+++.+.+|.  ++.++++|+|+|+|+..++.++..              |
T Consensus        41 v~~a~~~~~-~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~~--------------~  105 (376)
T 3ezs_A           41 IQDALKNHT-HSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLF--------------D  105 (376)
T ss_dssp             HHHHHHTTG-GGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHTT--------------T
T ss_pred             HHHHHHHhh-hhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHcC--------------C
Confidence            335554443 22334444445678899999999999998  667899999999999999988754              4


Q ss_pred             --CceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC--
Q psy12303        167 --GQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP--  242 (480)
Q Consensus       167 --g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~--  242 (480)
                        |+ .|+++.++|.++...+...|.   +++.+|.++++.+++ +|+++++++      +++|++++++|++|.+.|  
T Consensus       106 ~~gd-~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~-~l~~~~~~~------~~~v~~~~p~nptG~~~~~~  174 (376)
T 3ezs_A          106 YQNP-TIAYPNPFYQIYEGAAKFIKA---KSLLMPLTKENDFTP-SLNEKELQE------VDLVILNSPNNPTGRTLSLE  174 (376)
T ss_dssp             CSSC-EEEEEESCCTHHHHHHHHTTC---EEEEEECCGGGTSCC-CCCHHHHHH------CSEEEECSSCTTTCCCCCHH
T ss_pred             CCCC-EEEEecCCcHhHHHHHHHcCC---EEEEcccCCCCCcch-hHHhhhccC------CCEEEEcCCCCCcCCCCCHH
Confidence              45 788888999999999999988   889999887655666 788888765      889999999999999977  


Q ss_pred             -hHHHHHHHHHcCcEEEeeccccccccccccccCcccCC-------CCCCccceeCccccCC-CcccceEEEEeCchhhH
Q psy12303        243 -IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTG-------IERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLI  313 (480)
Q Consensus       243 -l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-------~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~  313 (480)
                       +++|.++|++||+++|+|++|+.+........  ....       ..+.++++.|++|+++ .+.++|+++. ++++..
T Consensus       175 ~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~  251 (376)
T 3ezs_A          175 ELISWVKLALKHDFILINDECYSEIYENTPPPS--LLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAG-DSRLLE  251 (376)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCC--HHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEE-CHHHHH
T ss_pred             HHHHHHHHHHHcCcEEEEEccchhhccCCCCCC--HHHccccccccccCcEEEEecchhccCCccceeEEEee-CHHHHH
Confidence             67777789999999999999998665321110  1100       1256788889999996 4467888875 454444


Q ss_pred             hhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        314 SCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       314 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      .........                     +.....+..+++...+ ..+.+++..++..++.+++.+.|+    ++.  
T Consensus       252 ~~~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~----~~~--  304 (376)
T 3ezs_A          252 KYKAFRAYL---------------------GYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK----NTL--  304 (376)
T ss_dssp             HHHHHHTTT---------------------CCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST----TCC--
T ss_pred             HHHHHHhhh---------------------cCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc----CCC--
Confidence            332110000                     0001223333333322 134467777888888888888776    332  


Q ss_pred             cCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeC---CcccEEEEecccCCCCHHHHHH
Q psy12303        393 LEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLN---DLPNFFRNIISSAAVTEGDIDF  468 (480)
Q Consensus       393 ~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~---~~~~~~R~~~~~~~~t~~di~~  468 (480)
                       .|..+.+++...+ .                ..++.+.|.+ .|+.+.....+.   ...+++|+++.   .++++|++
T Consensus       305 -~~~~~~~~~~~~~-~----------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~---~~~~~i~~  363 (376)
T 3ezs_A          305 -IYPYSFYVYLPVQ-N----------------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV---YDTPLLEK  363 (376)
T ss_dssp             -CCSBSSEEEEECS-C----------------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC---SCHHHHHH
T ss_pred             -CCCcceEEEEECC-C----------------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc---CCHHHHHH
Confidence             3555555443222 1                2356677777 675544322221   12579999943   38999999


Q ss_pred             HHHHHHHhhcc
Q psy12303        469 LLTEMDRLGHD  479 (480)
Q Consensus       469 ~~~~l~~~~~~  479 (480)
                      ++++|++++++
T Consensus       364 ~l~~l~~~l~~  374 (376)
T 3ezs_A          364 PLEIIETYREN  374 (376)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.93  E-value=3.5e-25  Score=219.75  Aligned_cols=305  Identities=15%  Similarity=0.109  Sum_probs=201.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhH---HHHHHH
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV---RSCAAV  187 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~---~~~~~~  187 (480)
                      ..+|..+++++++++|.++.. +++++||+|+..++.++..              ||+ .|+++..+|+++   ..++..
T Consensus        68 ~~~e~~ar~~la~~~g~~~~~-i~~~sGt~a~~~~~~~~~~--------------~gd-~Vl~~~~~~~~~~~~~~~~~~  131 (407)
T 2dkj_A           68 DRVESLAIERAKALFGAAWAN-VQPHSGSQANMAVYMALME--------------PGD-TLMGMDLAAGGHLTHGSRVNF  131 (407)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEE-CCCSSHHHHHHHHHHHHCC--------------TTC-EEEEECGGGTCCGGGTCTTSH
T ss_pred             HHHHHHHHHHHHHHhCCCcce-EEecchHHHHHHHHHHhcC--------------CCC-EEEEecccccCccchHHHHHh
Confidence            366766778999999997633 4555677899999988743              445 788888888877   344444


Q ss_pred             cCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccc
Q psy12303        188 CGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGG  266 (480)
Q Consensus       188 ~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~  266 (480)
                      .|... ..+.+++++ ++.+|+++|++++++.     ++++|+++.++++  .+.|+++|.++|++||+++|+|++|+.+
T Consensus       132 ~g~~~-~~~~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g  203 (407)
T 2dkj_A          132 SGKLY-KVVSYGVRPDTELIDLEEVRRLALEH-----RPKVIVAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAG  203 (407)
T ss_dssp             HHHHS-EEEEECCCTTTSSCCHHHHHHHHHHH-----CCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHH
T ss_pred             cCceE-EEEecCCCcccCccCHHHHHHHHhhc-----CCeEEEEeccccC--CCCCHHHHHHHHHHcCCEEEEEcccccc
Confidence            45411 233344343 6789999999999852     1778888777775  7889999999999999999999999986


Q ss_pred             ccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC
Q psy12303        267 LLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH  346 (480)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~  346 (480)
                      ....+.... .   .+.+|+++.|+||+++++.+ |++++++++...........+..                  .+..
T Consensus       204 ~~~~~~~~~-~---~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~l~~~~~~~~~------------------~~~~  260 (407)
T 2dkj_A          204 LVAAGLHPN-P---LPYAHVVTSTTHKTLRGPRG-GLILSNDPELGKRIDKLIFPGIQ------------------GGPL  260 (407)
T ss_dssp             HHHTTCSCC-C---TTTCSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHHHTTTTC------------------SSCC
T ss_pred             ccccCccCC-c---cccccEEEEeccccCCCCCc-eEEEECCHHHHHHHHhhhccccc------------------CCCc
Confidence            543332111 1   22479999999999987665 88887655554433211111110                  0000


Q ss_pred             C-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC-ceeEEEEEeecCccCCCchhhHHHHhhhh
Q psy12303        347 N-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP-EMVNVSFWYLPTRVRNMPHEKRLNILGEI  424 (480)
Q Consensus       347 ~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~l~~~  424 (480)
                      . ...++..++..+..++++++.++..++++++.+.|++ . |++++.++ ....+++.+......              
T Consensus       261 ~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~--------------  324 (407)
T 2dkj_A          261 EHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELAR-R-GYRIVTGGTDNHLFLVDLRPKGLT--------------  324 (407)
T ss_dssp             HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEGGGSCSSSEEEEECGGGTCC--------------
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh-C-CceeecCCCCceEEEEECcccCCC--------------
Confidence            1 1123344555443467888999999999999999999 6 89887543 444555543211100              


Q ss_pred             hHHHHHHHHhcccEEEeeee-----eCCcccEEEEecccC---CCCHHHHHHHHHHHHHhhc
Q psy12303        425 TPILKGRMMQAGTMMVGYQP-----LNDLPNFFRNIISSA---AVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       425 ~~~i~~~l~~~g~~~~~~~~-----~~~~~~~~R~~~~~~---~~t~~di~~~~~~l~~~~~  478 (480)
                      ..++.+.|.+.|+.+.....     .....+++|+++..+   .+|++|+++++++|+++++
T Consensus       325 ~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~  386 (407)
T 2dkj_A          325 GKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALL  386 (407)
T ss_dssp             HHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHh
Confidence            23566778788854433211     111246899994322   3799999999999998764

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.93  E-value=3.9e-24  Score=214.30  Aligned_cols=309  Identities=15%  Similarity=0.102  Sum_probs=188.9

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCCC---eEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH-
Q psy12303        107 APVFILMETVVLEKMRQIIGWQGGD---SILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR-  182 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~~~---~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~-  182 (480)
                      .+...++|+.+++++++++|.+...   .++++|||+||..++.++.+              ||+ .|+++...|.++. 
T Consensus        95 ~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~~--------------pGD-~Vl~~~~~h~g~l~  159 (490)
T 2a7v_A           95 AEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ--------------PHD-RIMGLDLPDGGHLT  159 (490)
T ss_dssp             ---CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC--------------SCE-ECCC----------
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHcC--------------CCC-EecccCcccccccc
Confidence            3455688988999999999997642   46677999999999988754              656 7888887775432 


Q ss_pred             --H-----HHHHcCCCCCCeEEeeCC-CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcC
Q psy12303        183 --S-----CAAVCGLGTDNCVEVPSD-KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYN  254 (480)
Q Consensus       183 --~-----~~~~~g~~~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~  254 (480)
                        .     .+...|... .++.++++ +++.+|+++|++++++.     +|++|+++.+++  |...|+++|.++|++||
T Consensus       160 h~~~~~~~~i~~~g~~~-~~~~~~vd~~~~~iD~d~le~~l~~~-----~~klIi~~~s~~--~~~~dl~~i~~ia~~~g  231 (490)
T 2a7v_A          160 HGYMSDVKRISATSIFF-ESMPYKLNPKTGLIDYNQLALTARLF-----RPRLIIAGTSAY--ARLIDYARMREVCDEVK  231 (490)
T ss_dssp             ----------------------CCBCTTTCSBCHHHHHHHHHHH-----CCSEEEECCSSC--CSCCCHHHHHHHHHHTT
T ss_pred             chhhhcchhHHHcCCeE-EEEecccccccCCcCHHHHHHHHhhc-----CCcEEEEcCCCC--CCcccHHHHHHHHHHcC
Confidence              1     234445422 33455555 46899999999999764     277887765544  56779999999999999


Q ss_pred             cEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCch--------------hhHhhhcCCc
Q psy12303        255 MWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDG--------------LLISCNQMSA  320 (480)
Q Consensus       255 ~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~--------------~~~~~~~~~~  320 (480)
                      +++|+|+||+.+......... .+   +++|++++++||++++|.| |+++.++..              +......   
T Consensus       232 ~~livD~Ah~~glv~~g~~~~-~~---~~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~~~~~~~l~~~i~~---  303 (490)
T 2a7v_A          232 AHLLADMAHISGLVAAKVIPS-PF---KHADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDRINF---  303 (490)
T ss_dssp             CEEEEECGGGHHHHHTTSSCC-GG---GTCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTEEEEECCCHHHHHH---
T ss_pred             CEEEEccccccccccCCcCCC-CC---CCCCEEEECCcccCccccc-hheeeccchhcccccccchhhHHHHHHHHH---
Confidence            999999999876553332222 12   2689999999999988765 888877641              1111110   


Q ss_pred             ccccccccccCcccCCCCccccCCCCCC-chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC-cee
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHND-IFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP-EMV  398 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~-~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~-~~~  398 (480)
                       .++.              +.+.+.... ..++..++...-.+.++++.++..+++++|.+.|.+  .|++++... ...
T Consensus       304 -~~~~--------------g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~--~G~~v~~~~t~t~  366 (490)
T 2a7v_A          304 -AVFP--------------SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE--RGYSLVSGGTDNH  366 (490)
T ss_dssp             -HHTT--------------TTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSCSSS
T ss_pred             -Hhcc--------------cCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH--cCcEEecCCCCCe
Confidence             0000              011111111 122233444332345688889999999999999999  599987532 334


Q ss_pred             EEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCC-----cccEEEEec---ccCCCCHHHHHHHH
Q psy12303        399 NVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLND-----LPNFFRNII---SSAAVTEGDIDFLL  470 (480)
Q Consensus       399 ~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~-----~~~~~R~~~---~~~~~t~~di~~~~  470 (480)
                      .+.+.+.+..+.              ..++.+.|.+.|+ .+......+     .+..+|++.   .+...+++|+++++
T Consensus       367 lv~vdl~~~g~~--------------~~~~~~~L~~~GI-~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~  431 (490)
T 2a7v_A          367 LVLVDLRPKGLD--------------GARAERVLELVSI-TANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVV  431 (490)
T ss_dssp             EEEEECTTTTCC--------------HHHHHHHHHHTTE-ECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHH
T ss_pred             EEEEEeCCCCCC--------------HHHHHHHHHhCCe-EEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHH
Confidence            444433222211              2345567767774 444321111     146899963   35567999999999


Q ss_pred             HHHHHhhc
Q psy12303        471 TEMDRLGH  478 (480)
Q Consensus       471 ~~l~~~~~  478 (480)
                      +.|.++++
T Consensus       432 ~~i~~~l~  439 (490)
T 2a7v_A          432 DFIDEGVN  439 (490)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.93  E-value=5.6e-24  Score=211.74  Aligned_cols=308  Identities=13%  Similarity=0.116  Sum_probs=197.4

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHH---
Q psy12303        107 APVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS---  183 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~---  183 (480)
                      .+....+++.+++++++++|.++.++++++ ||+|+..++.++.+              ||+ .|+++..+|.++..   
T Consensus        66 ~~~~~~~~~~~~~~la~~~g~~~~~i~~~s-Gt~a~~~~~~~~~~--------------~gd-~vl~~~~~~~~~~~~~~  129 (417)
T 3n0l_A           66 CEFVDEIETLAIERCKKLFNCKFANVQPNS-GSQANQGVYAALIN--------------PGD-KILGMDLSHGGHLTHGA  129 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCSEEECCCSS-HHHHHHHHHHHHSC--------------TTC-EEEEECC----------
T ss_pred             chHHHHHHHHHHHHHHHHhCCCCcceEecc-HHHHHHHHHHHhcC--------------CCC-EEEecccccccccchhh
Confidence            355678888899999999999775565555 58999999988743              556 78888888877655   


Q ss_pred             HHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccc
Q psy12303        184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       184 ~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                      .....|.+. .++.+++++++.+|+++|++++++.     +|++|+++++++  |.+.|+++|.++|++||+++|+|++|
T Consensus       130 ~~~~~g~~~-~~~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~  201 (417)
T 3n0l_A          130 KVSSSGKMY-ESCFYGVELDGRIDYEKVREIAKKE-----KPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAH  201 (417)
T ss_dssp             ------CCS-EEEEECCCTTSSCCHHHHHHHHHHH-----CCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTT
T ss_pred             hhhhhccee-eeEeccCCCCCCcCHHHHHHHHHhc-----CCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECcc
Confidence            334444432 4566777777889999999999843     178888888764  99999999999999999999999998


Q ss_pred             cccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccC
Q psy12303        264 GGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQC  343 (480)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  343 (480)
                      +.+......... .   +..+|+++.|+||++++|. .|+++.+++.+..........+..                  +
T Consensus       202 ~~g~~~~~~~~~-~---~~~~di~~~s~sK~l~g~~-~G~~~~~~~~~~~~~~~~~~~~~~------------------~  258 (417)
T 3n0l_A          202 IAGLVVAGEHPS-P---FPYAHVVSSTTHKTLRGPR-GGIIMTNDEELAKKINSAIFPGIQ------------------G  258 (417)
T ss_dssp             THHHHHTTSSCC-C---TTTCSEEEEESSTTTCSCS-CEEEEESCHHHHHHHHHHHTTTTC------------------S
T ss_pred             chhhhhcccCCC-c---cccceEEEeeCccccCCCC-eeEEEECCHHHHHHHhhhhCCccc------------------C
Confidence            766553332211 1   2257999999999997665 488777655554433211111100                  0


Q ss_pred             CCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc-eeEEEEEeecCccCCCchhhHHHHh
Q psy12303        344 GRH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE-MVNVSFWYLPTRVRNMPHEKRLNIL  421 (480)
Q Consensus       344 ~r~-~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~-~~~v~f~~~~~~~~~~~~~~~~~~l  421 (480)
                      +.. ....++..++.....+++.++.++..++++++.+.|.+  .|++++..+. ...+.+.+.+....           
T Consensus       259 ~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~~~~~~~~~~~~~-----------  325 (417)
T 3n0l_A          259 GPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD--RKFKLVSDGTDNHLVLMSFLDREFS-----------  325 (417)
T ss_dssp             SCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSCSSSEEEEECTTSSSC-----------
T ss_pred             CcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--CCceeccCCCCceEEEEEcccCCCC-----------
Confidence            000 12223344444434466788899999999999999999  7888864322 33333333222111           


Q ss_pred             hhhhHHHHHHHHhcccEEEeeeeeCC------cccEEEEecc---cCCCCHHHHHHHHHHHHHhhc
Q psy12303        422 GEITPILKGRMMQAGTMMVGYQPLND------LPNFFRNIIS---SAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       422 ~~~~~~i~~~l~~~g~~~~~~~~~~~------~~~~~R~~~~---~~~~t~~di~~~~~~l~~~~~  478 (480)
                         ...+.+.|.+.|+.+... ....      ....+|+++.   ....++++|+++++.|+++++
T Consensus       326 ---~~~~~~~l~~~gi~v~~~-~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~  387 (417)
T 3n0l_A          326 ---GKDADLALGNAGITANKN-TVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILD  387 (417)
T ss_dssp             ---HHHHHHHHHHTTEECEEC-CCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHcCeEEecc-ccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence               234566777778543321 1110      1357999842   223679999999999998765

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.93  E-value=1.3e-24  Score=214.90  Aligned_cols=311  Identities=12%  Similarity=0.018  Sum_probs=201.2

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCC-CCeEE-CCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchh-HHH
Q psy12303        107 APVFILMETVVLEKMRQIIGWQG-GDSIL-APGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS-VRS  183 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~-~~~~~-t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s-~~~  183 (480)
                      ++...++.+++++++++++|+++ .++++ |+|||+|+..++.++.+              ||  +++++...|.. ...
T Consensus        73 ~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~--------------~g--v~~v~~~~~~~~~~~  136 (398)
T 2fyf_A           73 QAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLID--------------KR--SLHLTYGEFSAKFAS  136 (398)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCS--------------SC--EEEEECSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcC--------------CC--eEEEeCCHHHHHHHH
Confidence            45556677889999999999974 57888 99999999999987742              32  23335555532 233


Q ss_pred             HHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccc
Q psy12303        184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       184 ~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                      .+...+.+. +++.+|.+.+...+. +    ++      .+|++|++++++|++|.+.|+++|.++   +|+++|+|++|
T Consensus       137 ~~~~~~~g~-~~~~v~~~~g~~~~~-~----i~------~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~  201 (398)
T 2fyf_A          137 AVSKNPFVG-EPIIITSDPGSAPEP-Q----TD------PSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATS  201 (398)
T ss_dssp             HHHHCTTSC-CCEEEECCTTCCCCC-C----CC------TTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTT
T ss_pred             HHHHhCCCC-ceEEEecCCCCCCCc-c----cc------CCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEecc
Confidence            455553222 678888874333332 1    22      238899999999999999999999887   89999999999


Q ss_pred             cccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhc------CCcccccccccccCcccCCC
Q psy12303        264 GGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQ------MSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~  337 (480)
                      +.+..+.+.         +++|+++.++||+++.|.++|++++++ +.+.....      ..++|+.......  .+..+
T Consensus       202 ~~~~~~~~~---------~~~di~~~s~sK~~~~~gg~g~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~  269 (398)
T 2fyf_A          202 GAGGLPVDI---------AETDAYYFAPQKNFASDGGLWLAIMSP-AALSRIEAIAATGRWVPDFLSLPIAVE--NSLKN  269 (398)
T ss_dssp             TTTTSCCCG---------GGCSEEEECTTSTTCSCSSEEEEEECH-HHHHHHHHHHHTTCCCCGGGCHHHHHH--HHTTT
T ss_pred             ccCCcccCc---------ccCcEEEEecCcccCCCCceEEEEECH-HHHHHhhcccccCCCCCcEEehHHHhh--hcccC
Confidence            887643321         147999999999999876788888754 44333211      0122322110000  00000


Q ss_pred             CccccCCCC-CCchHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHhcCCCCeEEec-CC--cee-EEEEEeecCccCC
Q psy12303        338 DKVIQCGRH-NDIFKLWLQWRAKGDEG-FEKQIDRLMELAEYMVKKIKSMPDKFYLIL-EP--EMV-NVSFWYLPTRVRN  411 (480)
Q Consensus       338 ~~~~~~~r~-~~~l~~~~~l~~~g~~~-~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~-~~--~~~-~v~f~~~~~~~~~  411 (480)
                       ... .+.. ....++..+++.+...+ ++++.++..++++++.+.|++ .+|++++. .|  ..+ .++|.+ +.... 
T Consensus       270 -~~~-~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~-~~~~~-  344 (398)
T 2fyf_A          270 -QTY-NTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQE-RPYTTPFVTDPGLRSQVVGTIDF-VDDVD-  344 (398)
T ss_dssp             -CCS-SCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH-STTEEESCCSGGGBCSSEEEEEE-CTTSC-
T ss_pred             -CCC-CCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-cCCceeccCChhhcCCcEEEEEC-CCCCC-
Confidence             000 1111 12234455565554555 888999999999999999999 78999864 24  344 555543 22211 


Q ss_pred             CchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        412 MPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       412 ~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                                   ..++.+.|.++|+.+.......+ .+++|++ ++..+|++|+++++++|+++++++
T Consensus       345 -------------~~~l~~~L~~~gI~v~~g~~~~~-~~~iRis-~~~~~t~e~i~~~~~~l~~~l~~~  398 (398)
T 2fyf_A          345 -------------AGTVAKILRANGIVDTEPYRKLG-RNQLRVA-MFPAVEPDDVSALTECVDWVVERL  398 (398)
T ss_dssp             -------------HHHHHHHHHHTTCBCCSCCTTTC-SSEEEEE-CCTTSCHHHHHHHHHHHHHHHHTC
T ss_pred             -------------HHHHHHHHHHCCcEEecCcccCC-CCEEEEE-ecCCCCHHHHHHHHHHHHHHHHhC
Confidence                         24567788888855432111112 4799999 777889999999999999987764

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.92  E-value=3.4e-23  Score=204.63  Aligned_cols=318  Identities=11%  Similarity=0.002  Sum_probs=213.1

Q ss_pred             HHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCC---CC-CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCcc
Q psy12303         90 GEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQ---GG-DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAI  165 (480)
Q Consensus        90 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~---~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~  165 (480)
                      .+.+...+. ....|....+..++++++.+++.+.+|.+   +. ++++|+|+++|+..++.+++.              
T Consensus        49 ~~a~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~--------------  113 (396)
T 3jtx_A           49 TDALTASLH-ELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLN--------------  113 (396)
T ss_dssp             HHHHHHTGG-GGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCC--------------
T ss_pred             HHHHHHHhh-hccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhC--------------
Confidence            355555443 23344444456789999999999999954   66 899999999999999988754              


Q ss_pred             CCc----eEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCC-CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccc
Q psy12303        166 KGQ----LVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKR-GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAF  240 (480)
Q Consensus       166 ~g~----~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~-~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~  240 (480)
                      ||+    ..|+++.++|.++..++...|.   +++.+|.+++ +.+|+++|++++++.      +++|++++++|++|.+
T Consensus       114 ~g~~~~~d~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~g~~~d~~~l~~~~~~~------~~~v~l~~p~nptG~~  184 (396)
T 3jtx_A          114 PVSDGIKPAIVSPNPFYQIYEGATLLGGG---EIHFANCPAPSFNPDWRSISEEVWKR------TKLVFVCSPNNPSGSV  184 (396)
T ss_dssp             C---CCCCEEEEEESCCHHHHHHHHHTTC---EEEEEECCTTTCCCCGGGSCHHHHHT------EEEEEEESSCTTTCCC
T ss_pred             CCCccCCCEEEEcCCCcHhHHHHHHHcCC---EEEEeecCCCCCccCHHHHHHhhccC------cEEEEEECCCCCCCCc
Confidence            331    4788888999999999999998   8889998654 578999999999875      8999999999999999


Q ss_pred             cChHH---HHHHHHHcCcEEEeeccccccccccccccCccc------CCCCCCccceeCccccCCC-cccceEEEEeCch
Q psy12303        241 DPIEE---IADICQKYNMWLHVDAAWGGGLLLSKKYRHPRL------TGIERADSVTWNPHKLMGT-LLQCSTIHFKQDG  310 (480)
Q Consensus       241 ~~l~~---I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~------~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~  310 (480)
                      .|.++   |.++|++||+++|+|++|+.+......... ..      ..-.+.++++.|++|.++. +.++|+++. ++.
T Consensus       185 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~  262 (396)
T 3jtx_A          185 LDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLG-CLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAG-DAE  262 (396)
T ss_dssp             CCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCC-HHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEE-CHH
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCch-HHhhhhhcccccCcEEEEeccccccCCcccceEEEEe-CHH
Confidence            77555   999999999999999999986543211000 00      0012567888899997554 467888865 554


Q ss_pred             hhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCe
Q psy12303        311 LLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKF  389 (480)
Q Consensus       311 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~  389 (480)
                      +......... +.                    +.....+...++...+ ..+.+.+..++..++.+++.+.|.+ .  +
T Consensus       263 ~~~~~~~~~~-~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~--~  318 (396)
T 3jtx_A          263 LLKNFLLYRT-YH--------------------GSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQ-V--F  318 (396)
T ss_dssp             HHHHHHHHHH-HH--------------------TCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTT-T--S
T ss_pred             HHHHHHHHHh-hc--------------------ccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh-c--C
Confidence            4443321100 00                    0001222333332222 1456788888889999999999988 4  3


Q ss_pred             EEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeCC--------cccEEEEecccCC
Q psy12303        390 YLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLND--------LPNFFRNIISSAA  460 (480)
Q Consensus       390 ~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~~--------~~~~~R~~~~~~~  460 (480)
                      .+ ..|..+.+++...+. ..              ..++.++|.+ .|+. +.++...+        ..+++|+++ .. 
T Consensus       319 ~~-~~~~~~~~~~~~~~~-~~--------------~~~~~~~l~~~~gi~-v~~g~~~~~~~~~~~~~~~~iRis~-~~-  379 (396)
T 3jtx_A          319 DV-KLPDASFYIWLKVPD-GD--------------DLAFARNLWQKAAIQ-VLPGRFLARDTEQGNPGEGYVRIAL-VA-  379 (396)
T ss_dssp             CC-CCCSSSSEEEEECTT-SC--------------HHHHHHHHHHHHCEE-CEEGGGGCCCCTTCCTTTTEEEEEC-CS-
T ss_pred             Cc-cCCCeeEEEEEECCC-CC--------------HHHHHHHHHHHCCEE-EeCChHhCCcccccCCCCCeEEEEE-cC-
Confidence            33 345555554433322 00              2355666654 4744 43322211        157999994 33 


Q ss_pred             CCHHHHHHHHHHHHHhh
Q psy12303        461 VTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       461 ~t~~di~~~~~~l~~~~  477 (480)
                       ++++|++++++|++++
T Consensus       380 -~~~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          380 -DVATCVKAAEDIVSLY  395 (396)
T ss_dssp             -CHHHHHHHHHHHHHHC
T ss_pred             -CHHHHHHHHHHHHHHh
Confidence             8999999999999875

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=8.8e-25  Score=219.47  Aligned_cols=340  Identities=11%  Similarity=0.057  Sum_probs=219.0

Q ss_pred             hHHHHHHHHcCc-CCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCc
Q psy12303         88 MAGEWLIATANT-NMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSA  164 (480)
Q Consensus        88 ~~~~~l~~~~~~-~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~  164 (480)
                      .+.+.+...+.. ....|....+..++++++.+++.+.+|.  +++++++|+||++|+..++.++.+             
T Consensus        74 ~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~~-------------  140 (447)
T 3b46_A           74 FAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLN-------------  140 (447)
T ss_dssp             HHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHCC-------------
T ss_pred             HHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHcC-------------
Confidence            344555555543 2234544445678888888888888875  446899999999999999988753             


Q ss_pred             cCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC------------CCCCCHHHHHHHHHHHHHCCCccEEEEecc
Q psy12303        165 IKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK------------RGRLIPSELERLVLERKAKGDIPFFVNCTS  232 (480)
Q Consensus       165 ~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~------------~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~  232 (480)
                       ||+ .|++..+.|.++...+...|.   +++.+|.++            ++.+|+++|++++++.      +++|++++
T Consensus       141 -~gd-~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~  209 (447)
T 3b46_A          141 -AGD-EVIVFEPFFDQYIPNIELCGG---KVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSK------TKAVIINT  209 (447)
T ss_dssp             -TTC-EEEEEESCCTTHHHHHHHTTC---EEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTT------EEEEEEES
T ss_pred             -CCC-EEEEeCCCchhHHHHHHHcCC---EEEEEeCCCccccccccccccCcccCHHHHHHhhccC------CeEEEEeC
Confidence             455 788888899999999999887   788888754            3679999999988643      89999999


Q ss_pred             CCCcccccc---ChHHHHHHHHHcCcEEEeeccccccccccccccCccc-CCCCCCccceeCccccCC-CcccceEEEEe
Q psy12303        233 GTTVLGAFD---PIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRL-TGIERADSVTWNPHKLMG-TLLQCSTIHFK  307 (480)
Q Consensus       233 ~~~~~G~~~---~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~  307 (480)
                      ++|++|.+.   ++++|.++|++||+++++|++|+.+.+..+......+ .+..+.|+++.|++|+++ .+..+|+++.+
T Consensus       210 p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~  289 (447)
T 3b46_A          210 PHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSL  289 (447)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECS
T ss_pred             CCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeC
Confidence            999999985   5899999999999999999999986542211000001 111257889999999998 44568998874


Q ss_pred             CchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy12303        308 QDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG-DEGFEKQIDRLMELAEYMVKKIKSMP  386 (480)
Q Consensus       308 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~~~  386 (480)
                      +++++....... .+..              +   +.......++..++.... .+.++++.++..++++++.+.|++ .
T Consensus       290 ~~~l~~~l~~~~-~~~~--------------~---~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~  350 (447)
T 3b46_A          290 NAELLSYAAKAH-TRIC--------------F---ASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDE-L  350 (447)
T ss_dssp             CHHHHHHHHHHH-HHHT--------------S---SCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             CHHHHHHHHHHH-hhcc--------------C---CCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHH-C
Confidence            555544332110 0000              0   000011122223333321 345677888899999999999999 5


Q ss_pred             CCeEEecCCceeEEEEEeecCc-cC-CCc-hhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeCC------cccEEEEec
Q psy12303        387 DKFYLILEPEMVNVSFWYLPTR-VR-NMP-HEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLND------LPNFFRNII  456 (480)
Q Consensus       387 ~g~~~~~~~~~~~v~f~~~~~~-~~-~~~-~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~~------~~~~~R~~~  456 (480)
                       |+++. .|..+.+++...+.. .. +.. ........  ...++.++|.+ .|+.+.....+..      ..+++|+++
T Consensus       351 -g~~~~-~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~  426 (447)
T 3b46_A          351 -GLPYT-APEGTYFVLVDFSKVKIPEDYPYPEEILNKG--KDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAV  426 (447)
T ss_dssp             -TCCEE-CCSBSSEEEEECTTCCCCTTCCCCGGGSSSC--HHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEEC
T ss_pred             -CCeec-CCCeeEEEEEecccccCccccccccccccCC--CHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEE
Confidence             88875 455555544322211 00 000 00000000  02356677764 6744433222211      147999994


Q ss_pred             ccCCCCHHHHHHHHHHHHHhh
Q psy12303        457 SSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       457 ~~~~~t~~di~~~~~~l~~~~  477 (480)
                      .   .++++|++++++|+++.
T Consensus       427 ~---~~~e~l~~~~~~l~~~~  444 (447)
T 3b46_A          427 C---KDDAYLENAVERLKLLK  444 (447)
T ss_dssp             C---SCHHHHHHHHHHGGGGG
T ss_pred             e---CCHHHHHHHHHHHHHHH
Confidence            3   38999999999998854

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.92  E-value=4.4e-24  Score=212.88  Aligned_cols=323  Identities=11%  Similarity=0.092  Sum_probs=213.3

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHhCCC--C-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCc
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQIIGWQ--G-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH  178 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~g~~--~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h  178 (480)
                      ..|....+..++++.+.+++.+.+|.+  + .++++|+|||+|+..++.++..              ||+ .|+++.++|
T Consensus        61 ~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~--------------~gd-~vl~~~p~~  125 (422)
T 3fvs_A           61 NQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVD--------------EGD-EVIIIEPFF  125 (422)
T ss_dssp             GSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCC--------------TTC-EEEEEESCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcC--------------CCC-EEEEcCCCc
Confidence            344444556788899999999988864  3 5799999999999999988743              445 788888899


Q ss_pred             hhHHHHHHHcCCCCCCeEEeeCCC------------CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc---Ch
Q psy12303        179 YSVRSCAAVCGLGTDNCVEVPSDK------------RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD---PI  243 (480)
Q Consensus       179 ~s~~~~~~~~g~~~~~v~~v~~~~------------~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~---~l  243 (480)
                      .++...+...|.   +++.+|.+.            ++.+|+++|+++++++      +++|++++++|++|.+.   ++
T Consensus       126 ~~~~~~~~~~g~---~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~nptG~~~~~~~l  196 (422)
T 3fvs_A          126 DCYEPMTMMAGG---RPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSR------TKALVLNTPNNPLGKVFSREEL  196 (422)
T ss_dssp             TTHHHHHHHTTC---EEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHH
T ss_pred             hhhHHHHHHcCC---EEEEEecccccccccccccccCCCCCHHHHHhhcCCC------ceEEEECCCCCCCCcCCCHHHH
Confidence            999999999988   788888875            3478999999988754      89999999999999997   59


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccccC-cccCCCCCCccceeCccccCCC-cccceEEEEeCchhhHhhhcCCcc
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRH-PRLTGIERADSVTWNPHKLMGT-LLQCSTIHFKQDGLLISCNQMSAE  321 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~~~~~~~  321 (480)
                      ++|.++|++||+++|+|++|+.+.+....... ..+....+.++++.|++|.++. +.++|+++.++ ..+.........
T Consensus       197 ~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~-~~~~~~~~~~~~  275 (422)
T 3fvs_A          197 ELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPD-HIMKHLRTVHQN  275 (422)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCH-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEEEeCH-HHHHHHHHHHhh
Confidence            99999999999999999999976543211100 0111111345777899999974 46789888644 343332211000


Q ss_pred             cccccccccCcccCCCCccccCCCCCCchHHHHHHHHh---------cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        322 YLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK---------GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       322 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~---------g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      ..               +   .   ...+..++....+         ..+.++++.++..++++++.+.|++ . |++++
T Consensus       276 ~~---------------~---~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~  332 (422)
T 3fvs_A          276 SV---------------F---H---CPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQS-V-GLKPI  332 (422)
T ss_dssp             TT---------------C---C---CCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHT-T-TCEEE
T ss_pred             cc---------------C---C---CCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHH-c-CCeec
Confidence            00               0   0   1222233222222         2356778889999999999999999 5 88876


Q ss_pred             cCCceeEEEEEeecCc---cCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeC------CcccEEEEecccCCCC
Q psy12303        393 LEPEMVNVSFWYLPTR---VRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLN------DLPNFFRNIISSAAVT  462 (480)
Q Consensus       393 ~~~~~~~v~f~~~~~~---~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~------~~~~~~R~~~~~~~~t  462 (480)
                      . |..+.+.+...+..   ........  ...  ...++...+.+ .|+.+.....+.      ...+++|+++. .  +
T Consensus       333 ~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~-~--~  404 (422)
T 3fvs_A          333 I-PQGSYFLITDISDFKRKMPDLPGAV--DEP--YDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFV-K--D  404 (422)
T ss_dssp             B-CSBSSEEEEECHHHHHHCCCCCCCT--TCC--HHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECC-C--C
T ss_pred             C-CCeeeEEEEechhhccccccccccc--ccc--cHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEec-C--C
Confidence            4 45555444322110   00000000  000  01245555544 564433322221      11579999943 3  9


Q ss_pred             HHHHHHHHHHHHHhhccC
Q psy12303        463 EGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       463 ~~di~~~~~~l~~~~~~l  480 (480)
                      +++|++++++|+++++++
T Consensus       405 ~e~i~~~l~~l~~~l~~l  422 (422)
T 3fvs_A          405 EATLQAMDEKLRKWKVEL  422 (422)
T ss_dssp             HHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHhhC
Confidence            999999999999988764

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.92  E-value=6.3e-24  Score=207.17  Aligned_cols=284  Identities=13%  Similarity=0.060  Sum_probs=198.8

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++++++++|.+++++++|+|||+|+..++.++.+              ||+ .|+++..+|.++...+...|.   +
T Consensus        68 ~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~~--------------~gd-~Vl~~~p~~~~~~~~~~~~g~---~  129 (360)
T 3hdo_A           68 QKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFAA--------------EGE-EIGYVHPSYSYYGTLAEVQGA---R  129 (360)
T ss_dssp             HHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCC--------------TTC-EEEEESSSCTHHHHHHHHHTC---E
T ss_pred             HHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHhC--------------CCC-EEEEcCCChHHHHHHHHHCCC---E
Confidence            3567778888998778999999999999999987743              455 788888999999999999998   8


Q ss_pred             eEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccccccc
Q psy12303        195 CVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYR  274 (480)
Q Consensus       195 v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~  274 (480)
                      ++.+|.++++.+  +++++++        .+++|++++++|++|.+.|+++|.++|+++|+++++|++|+.+... .  .
T Consensus       130 ~~~v~~~~~~~~--~~l~~~~--------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~-~--~  196 (360)
T 3hdo_A          130 VRTFGLTGDFRI--AGFPERY--------EGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAES-N--A  196 (360)
T ss_dssp             EEEECBCTTSSB--TTCCSSB--------CSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSC-C--C
T ss_pred             EEEeeCCCCCCH--HHHHhhc--------CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCc-c--h
Confidence            899999877655  4443221        2568999999999999999999999999999999999999874211 0  0


Q ss_pred             CcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHH
Q psy12303        275 HPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLW  353 (480)
Q Consensus       275 ~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~  353 (480)
                      .+... ..+.++++.|++|+++ .+.++|+++. ++++..........|-                       ...+..+
T Consensus       197 ~~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~-----------------------~~~~~~~  251 (360)
T 3hdo_A          197 LELVR-RHENVVVTRTLSKSYSLAGMRIGLAIA-RPEVIAALDKIRDHYN-----------------------LDRLAQA  251 (360)
T ss_dssp             THHHH-HCSSEEEEEESTTTTSCTTSCCEEEEC-CHHHHHHHHHHSCSCC-----------------------SCHHHHH
T ss_pred             hHHhc-cCCCEEEEecchHhhcCCccceeeEee-CHHHHHHHHHhCCCCC-----------------------CCHHHHH
Confidence            00111 1144577889999987 4467888886 5555444322111110                       1223333


Q ss_pred             HHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHH
Q psy12303        354 LQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRM  432 (480)
Q Consensus       354 ~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l  432 (480)
                      ++...+ ..+.+++..++..++++++.+.|++ . ++++. ++....+.+.. + ..   +           ..++.+.|
T Consensus       252 a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~-~~~~~~~~~~~-~-~~---~-----------~~~l~~~l  312 (360)
T 3hdo_A          252 ACVAALRDQAYLSECCRRIRETREWFTTELRS-I-GYDVI-PSQGNYLFATP-P-DR---D-----------GKRVYDGL  312 (360)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEC-CCSSSEEEEEC-T-TC---C-----------HHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCEEc-CCCccEEEEEC-C-CC---C-----------HHHHHHHH
Confidence            333322 2456788889999999999999999 5 88874 45555444422 1 11   1           24567788


Q ss_pred             HhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        433 MQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       433 ~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .+.|+.+... ...+..+++|+++ +   +++|+++++++|+++.+
T Consensus       313 ~~~gi~v~~~-~~~~~~~~iRis~-~---~~~e~~~l~~al~~~~~  353 (360)
T 3hdo_A          313 YARKVLVRHF-SDPLLAHGMRISI-G---TREEMEQTLAALKEIGE  353 (360)
T ss_dssp             HHTTEECBCC-CSTTTTTSEEEEC-C---CHHHHHHHHHHHHHHHC
T ss_pred             HHCCEEEEEC-CCCCCCCEEEEEc-C---CHHHHHHHHHHHHHHhc
Confidence            8888544332 2222257999994 3   89999999999998765

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.92  E-value=3.7e-23  Score=210.17  Aligned_cols=330  Identities=12%  Similarity=0.051  Sum_probs=219.2

Q ss_pred             CCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCC
Q psy12303        100 NMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQC  177 (480)
Q Consensus       100 ~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~  177 (480)
                      ....|...++..++++++.+++.+..|.  ++.++++|+|+|+|+..++.++...             ||+ .|+++.++
T Consensus       126 ~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------------~gd-~Vlv~~p~  191 (500)
T 3tcm_A          126 ATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRN-------------EKD-GILVPIPQ  191 (500)
T ss_dssp             CSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCS-------------TTE-EEEEEESC
T ss_pred             cCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCC-------------CCC-EEEEeCCC
Confidence            3456777777889999999999988885  5678999999999999999887521             445 89999999


Q ss_pred             chhHHHHHHHcCCCCCCeEEeeCCCC--CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHH
Q psy12303        178 HYSVRSCAAVCGLGTDNCVEVPSDKR--GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQK  252 (480)
Q Consensus       178 h~s~~~~~~~~g~~~~~v~~v~~~~~--~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~  252 (480)
                      |+++..++...|.   +++.++++++  +.+|+++|++++++...+|.++++|++++++||||.+.+   +++|+++|++
T Consensus       192 y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~  268 (500)
T 3tcm_A          192 YPLYSASIALHGG---ALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKN  268 (500)
T ss_dssp             CTHHHHHHHHTTC---EEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             cHhHHHHHHHcCC---EEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHH
Confidence            9999999999998   7888888764  689999999999987777777999999999999999966   6777777999


Q ss_pred             cCcEEEeeccccccccccccccCcc---cCC----CCCCc-cceeCccccC-CC-cccceEEEEe--CchhhHhhhcCCc
Q psy12303        253 YNMWLHVDAAWGGGLLLSKKYRHPR---LTG----IERAD-SVTWNPHKLM-GT-LLQCSTIHFK--QDGLLISCNQMSA  320 (480)
Q Consensus       253 ~~~~l~vD~a~~~~~~~~~~~~~~~---~~~----~~~~D-~~~~s~hK~~-~~-p~~~g~~~~~--~~~~~~~~~~~~~  320 (480)
                      ||+++++|++|+.+.+.......+.   ...    .+..+ +++.|++|.+ +. +..+|++++.  ++...........
T Consensus       269 ~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~  348 (500)
T 3tcm_A          269 EGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIAS  348 (500)
T ss_dssp             HTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHHH
T ss_pred             cCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHHh
Confidence            9999999999998655221100000   001    11222 3455999998 42 3567888873  4444443321110


Q ss_pred             ccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh------------cHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK------------GDEGFEKQIDRLMELAEYMVKKIKSMPDK  388 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~------------g~~~~~~~~~~~~~l~~~l~~~l~~~~~g  388 (480)
                      .+.                   +   .......+....+            -.+...++.++..++++++.+.|++ +||
T Consensus       349 ~~~-------------------~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~~g  405 (500)
T 3tcm_A          349 VNL-------------------C---SNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNK-LEG  405 (500)
T ss_dssp             TTC-------------------C---CCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STT
T ss_pred             ccc-------------------C---CCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence            000                   0   1111222221111            1234567778888999999999999 889


Q ss_pred             eEEecCCceeEEEEEeecCccCCCchhhH--HHHhhhhhH-H-HHHHHHhcccEEEeeeee---CCcccEEEEecccCCC
Q psy12303        389 FYLILEPEMVNVSFWYLPTRVRNMPHEKR--LNILGEITP-I-LKGRMMQAGTMMVGYQPL---NDLPNFFRNIISSAAV  461 (480)
Q Consensus       389 ~~~~~~~~~~~v~f~~~~~~~~~~~~~~~--~~~l~~~~~-~-i~~~l~~~g~~~~~~~~~---~~~~~~~R~~~~~~~~  461 (480)
                      +++. +|+.++++|.-....     ....  .+.+..... . +.+.|.+.|++++....+   .+ ..++|+++.   +
T Consensus       406 ~~~~-~~~g~~~~~~~~~lp-----~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g-~~~iRis~~---~  475 (500)
T 3tcm_A          406 ITCN-EAEGAMYVFPQICLP-----QKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPG-TWHFRCTIL---P  475 (500)
T ss_dssp             EECC-CCCBTTEECCEECCC-----HHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTT-CCBEEEESC---S
T ss_pred             cEEe-cCCeEEEEeeeecCc-----hhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCC-CCEEEEEEC---C
Confidence            9985 677777766322110     0000  000000011 1 234555667554432222   22 468999944   7


Q ss_pred             CHHHHHHHHHHHHHhhcc
Q psy12303        462 TEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       462 t~~di~~~~~~l~~~~~~  479 (480)
                      ++++|++++++|+++.++
T Consensus       476 ~~e~i~~~i~~l~~~~~~  493 (500)
T 3tcm_A          476 QEDKIPAVISRFTVFHEA  493 (500)
T ss_dssp             CTTTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            899999999999887653

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.92  E-value=3.5e-23  Score=202.24  Aligned_cols=291  Identities=9%  Similarity=-0.009  Sum_probs=198.3

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++.+++++|.+++++++|+|+|+++..++.++  .              |+ .|++..++|+++...+...|.   +
T Consensus        62 ~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~--~--------------gd-~vl~~~p~y~~~~~~~~~~g~---~  121 (364)
T 1lc5_A           62 FHLHQALARHHQVPASWILAGNGETESIFTVASGL--K--------------PR-RAMIVTPGFAEYGRALAQSGC---E  121 (364)
T ss_dssp             HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH--C--------------CS-EEEEEESCCTHHHHHHHHTTC---E
T ss_pred             HHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc--C--------------CC-eEEEeCCCcHHHHHHHHHcCC---e
Confidence            34566688888988778999999999999998877  2              14 688888899999999999887   7


Q ss_pred             eEEeeCCCCCCCC-HHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCcEEEeecccccccccc
Q psy12303        195 CVEVPSDKRGRLI-PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLS  270 (480)
Q Consensus       195 v~~v~~~~~~~~d-~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~  270 (480)
                      ++.+|.+++..++ ++++.+.+++      ++++|++++++|++|.+.|   +++|.++|++||+++|+|++|+.+....
T Consensus       122 ~~~v~~~~~~~~~~l~~~~~~~~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~  195 (364)
T 1lc5_A          122 IRRWSLREADGWQLTDAILEALTP------DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHE  195 (364)
T ss_dssp             EEEEECCGGGTTCCCTTHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTC
T ss_pred             EEEEeCCcccccchhHHHHHhccC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCc
Confidence            8889987522234 3444443322      3788999999999999988   8999999999999999999998765421


Q ss_pred             ccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCc
Q psy12303        271 KKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI  349 (480)
Q Consensus       271 ~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~  349 (480)
                      .. .. ...+..+.|+++.|+||+++.| .++|++++.+++...........|                       ....
T Consensus       196 ~~-~~-~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~-----------------------~~~~  250 (364)
T 1lc5_A          196 TG-FI-PALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPW-----------------------SVNA  250 (364)
T ss_dssp             CC-SG-GGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCTT-----------------------CSCH
T ss_pred             cc-hh-hHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCCCC-----------------------CCCH
Confidence            00 01 1111125678889999999843 567888834555544332211110                       0233


Q ss_pred             hHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHH
Q psy12303        350 FKLWLQWRAKG-DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPIL  428 (480)
Q Consensus       350 l~~~~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i  428 (480)
                      +..+++...+. .+.+++..++..++++++.+.|++ .|++++. ++....+.+.+ +..                ..++
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~-~~~g~~~~~~~-~~~----------------~~~l  311 (364)
T 1lc5_A          251 LAALAGEVALQDSAWQQATWHWLREEGARFYQALCQ-LPLLTVY-PGRANYLLLRC-ERE----------------DIDL  311 (364)
T ss_dssp             HHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHT-STTEEEC-CCSSSEEEEEE-SCT----------------TCCH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhc-CCCCEEC-CCCCeEEEEEC-CCc----------------HHHH
Confidence            44444444442 356778888889999999999999 8899875 45555554433 211                0135


Q ss_pred             HHHHHhcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        429 KGRMMQAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       429 ~~~l~~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+.|.++|+.+.....+.+ ..+++|+++.    +++|++++++.|++++++
T Consensus       312 ~~~l~~~gi~v~~g~~~~~~~~~~iRis~~----~~~~~~~l~~~l~~~~~~  359 (364)
T 1lc5_A          312 QRRLLTQRILIRSCANYPGLDSRYYRVAIR----SAAQNERLLAALRNVLTG  359 (364)
T ss_dssp             HHHHHTTTEECEECTTSTTCCTTEEEEECC----CHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHCCcEEeeCcccCCCCCCEEEEEeC----CHHHHHHHHHHHHHHhhc
Confidence            6777788754433222211 1479999942    689999999999988764

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.92  E-value=6.2e-23  Score=198.13  Aligned_cols=281  Identities=15%  Similarity=0.068  Sum_probs=199.4

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++.+++++|.++.++++|+|+|+++..++.++                ||+ .|+++.++|+++...++..|.   +
T Consensus        54 ~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~----------------~gd-~vl~~~p~~~~~~~~~~~~g~---~  113 (337)
T 3p1t_A           54 PRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF----------------SSM-RFVTAWPGFDGYRARIAVSGL---R  113 (337)
T ss_dssp             HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS----------------TTS-EEEEESSSCSHHHHHHTTSCC---E
T ss_pred             HHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc----------------CCC-eEEEeCCCcHHHHHHHHHcCC---E
Confidence            45677788899998889999999999988887665                235 788889999999999998887   8


Q ss_pred             eEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccccccc
Q psy12303        195 CVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYR  274 (480)
Q Consensus       195 v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~  274 (480)
                      ++.+|.++++.+|+++|+++  .      ++++|++++++|++|.+.|++++.++|+++++ +++|++|+.+.....   
T Consensus       114 ~~~v~~~~~~~~d~~~l~~~--~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~---  181 (337)
T 3p1t_A          114 HFEIGLTDDLLLDPNDLAQV--S------RDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRA---  181 (337)
T ss_dssp             EEEECBCTTSSBCHHHHTTC--C------TTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSS---
T ss_pred             EEEecCCCCCCCCHHHHHhh--c------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccccc---
Confidence            89999988889999999875  1      27899999999999999999999999999997 566999986432111   


Q ss_pred             CcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHH
Q psy12303        275 HPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLW  353 (480)
Q Consensus       275 ~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~  353 (480)
                        ........++++.|++|+++ .+.++|+++. ++............+                       ....+...
T Consensus       182 --~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~-----------------------~~~~~~~~  235 (337)
T 3p1t_A          182 --RGLAYGENELVFRSFSKSYGLAGLRLGALFG-PSELIAAMKRKQWFC-----------------------NVGTLDLH  235 (337)
T ss_dssp             --SCCCCBTTEEEEEESSSTTCCTTTCCEEEEC-CHHHHHHHHTTSCTT-----------------------CSCHHHHH
T ss_pred             --cccccCCCEEEEeeCchhccCcchheEEEEe-CHHHHHHHHhhcCCC-----------------------CCCHHHHH
Confidence              11122356788899999997 4567788875 444444432211000                       01222333


Q ss_pred             HHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHH
Q psy12303        354 LQWRAKG-DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRM  432 (480)
Q Consensus       354 ~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l  432 (480)
                      +....+. .+.+.+.+++..++++++.+.|++ . |+++. ++..+.+.+... .                 ...+.+.|
T Consensus       236 a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~~~~~~~~~~-~-----------------~~~~~~~l  294 (337)
T 3p1t_A          236 ALEAALDNDRAREAHIAKTLAQRRRVADALRG-L-GYRVA-SSEANFVLVENA-A-----------------GERTLRFL  294 (337)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCBC-CCSSSEEEEECT-T-----------------THHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH-C-cCEEC-CCCCeEEEEEcC-C-----------------HHHHHHHH
Confidence            3333332 345677778888889999999999 5 88764 555555554321 1                 12455677


Q ss_pred             HhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        433 MQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       433 ~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+.|+. +.++...+..+++|+++.    +++|+++++++|+++.++
T Consensus       295 ~~~gi~-v~~g~~~~~~~~iRis~~----~~~~~~~l~~al~~~~~~  336 (337)
T 3p1t_A          295 RERGIQ-VKDAGQFGLHHHIRISIG----REEDNDRLLAALAEYSDH  336 (337)
T ss_dssp             HHTTEE-CEEGGGGTCCSEEEEECC----CHHHHHHHHHHHHHHTC-
T ss_pred             HHCCeE-EEECccCCCCCeEEEecC----CHHHHHHHHHHHHHHhhc
Confidence            778744 443333333579999943    799999999999988653

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.92  E-value=7.6e-25  Score=214.29  Aligned_cols=301  Identities=17%  Similarity=0.138  Sum_probs=199.0

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++.+++++|.+  .+++++|||+|+..++.++.-.             ||+ .|+++..+|+++..++...|.   +
T Consensus        38 ~~l~~~la~~~~~~--~~~~~~sGt~al~~al~~~~~~-------------~gd-~Vi~~~~~~~~~~~~~~~~G~---~   98 (367)
T 3nyt_A           38 TELEDRLADFVGAK--YCISCANGTDALQIVQMALGVG-------------PGD-EVITPGFTYVATAETVALLGA---K   98 (367)
T ss_dssp             HHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTCC-------------TTC-EEEEESSSCTHHHHHHHHTTC---E
T ss_pred             HHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhCCC-------------CcC-EEEECCCccHHHHHHHHHcCC---E
Confidence            34556688888887  5999999999999999877321             545 788999999999999999988   8


Q ss_pred             eEEeeCCCC-CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccc
Q psy12303        195 CVEVPSDKR-GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       195 v~~v~~~~~-~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~  273 (480)
                      ++.++++++ +.+|+++|+++++++      +++|+   +++++|...|+++|.++|++||+++|+|++|+.+...... 
T Consensus        99 ~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~-  168 (367)
T 3nyt_A           99 PVYVDIDPRTYNLDPQLLEAAITPR------TKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGK-  168 (367)
T ss_dssp             EEEECBCTTTCSBCGGGTGGGCCTT------EEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTE-
T ss_pred             EEEEecCCccCCcCHHHHHHhcCcC------CcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCe-
Confidence            899999865 899999999998654      78777   5678999999999999999999999999999876542221 


Q ss_pred             cCcccCCCCCCccceeC--ccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchH
Q psy12303        274 RHPRLTGIERADSVTWN--PHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFK  351 (480)
Q Consensus       274 ~~~~~~~~~~~D~~~~s--~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~  351 (480)
                      ..    +. ..|++++|  +||+++++...|+++.+++.+............   ..    .+...  ....+.+...+.
T Consensus       169 ~~----~~-~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~---~~----~~~~~--~~g~~~~~~~~~  234 (367)
T 3nyt_A          169 RS----CN-LSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQ---DR----RYHHI--RVGVNSRLDTLQ  234 (367)
T ss_dssp             ET----TS-SSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTE---EE----TTEEC--SCCCBCCCCHHH
T ss_pred             ec----cC-CCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCC---Cc----Cceee--ccCcCCCccHHH
Confidence            11    11 12888888  489998634467777666655443322111000   00    00000  011222244555


Q ss_pred             HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHH
Q psy12303        352 LWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGR  431 (480)
Q Consensus       352 ~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~  431 (480)
                      +++.+..  .+.+++..++..++++++.+.|.+ . ++.+...+......+...+.....             ..++.+.
T Consensus       235 aa~~~~~--l~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~~  297 (367)
T 3nyt_A          235 AAILLPK--LEIFEEEIALRQKVAAEYDLSLKQ-V-GIGTPFIEVNNISVYAQYTVRMDN-------------RESVQAS  297 (367)
T ss_dssp             HHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHH-T-TCCCCCCCTTEECCCSSEEEECSS-------------HHHHHHH
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcc-C-CeeccCCCCCCceeeEEEEEEeCC-------------HHHHHHH
Confidence            5555544  355677888899999999999999 5 555432222111111100001100             2356677


Q ss_pred             HHhcccEEEeeee--------eC---C--------cccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        432 MMQAGTMMVGYQP--------LN---D--------LPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       432 l~~~g~~~~~~~~--------~~---~--------~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      |.++|+.......        +.   .        ....+|++ +++.+|++||+++++.|++.
T Consensus       298 L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp-~~~~~t~~~i~~v~~~~~~~  360 (367)
T 3nyt_A          298 LKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLP-MHPYLDTASIKIICAALTNL  360 (367)
T ss_dssp             HHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEEC-CCTTCCHHHHHHHHHHHHC-
T ss_pred             HHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEcc-CCCCCCHHHHHHHHHHHHHH
Confidence            7777754221110        00   0        03579999 89999999999999999864

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.92  E-value=2.6e-24  Score=208.71  Aligned_cols=295  Identities=14%  Similarity=0.138  Sum_probs=186.9

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHH---HHHHcCCCC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS---CAAVCGLGT  192 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~---~~~~~g~~~  192 (480)
                      ++++++++++|.+.  +++++|||+|+..++.++.+              ||+ .|+++..+|++...   .+...|.  
T Consensus        42 ~l~~~la~~~g~~~--~~~~~~gt~a~~~~~~~~~~--------------~gd-~Vl~~~~~~~~~~~~~~~~~~~g~--  102 (347)
T 1jg8_A           42 ELERLAAETFGKEA--ALFVPSGTMGNQVSIMAHTQ--------------RGD-EVILEADSHIFWYEVGAMAVLSGV--  102 (347)
T ss_dssp             HHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHCC--------------TTC-EEEEETTCHHHHSSTTHHHHHTCC--
T ss_pred             HHHHHHHHHhCCce--EEEecCcHHHHHHHHHHhcC--------------CCC-EEEEcCcchhhhccccchhhccCe--
Confidence            45567888899864  78999999999988876543              556 78888899987543   4566676  


Q ss_pred             CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcc-ccccC---hHHHHHHHHHcCcEEEeecccccccc
Q psy12303        193 DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVL-GAFDP---IEEIADICQKYNMWLHVDAAWGGGLL  268 (480)
Q Consensus       193 ~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~-G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~  268 (480)
                       +++.+ .++++.+|+++|++++++....+.++++|++++++|++ |.+.|   +++|.++|++||+++|+|++|..+..
T Consensus       103 -~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~  180 (347)
T 1jg8_A          103 -MPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNAS  180 (347)
T ss_dssp             -EEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHH
T ss_pred             -EEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcch
Confidence             67777 55567789999999886410011248999999999999 99866   57889999999999999999754321


Q ss_pred             cc-ccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC
Q psy12303        269 LS-KKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN  347 (480)
Q Consensus       269 ~~-~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~  347 (480)
                      .. +....+..   ..+|++++++||++++|  .|++++.+++...........+ ..                  +.+.
T Consensus       181 ~~~~~~~~~~~---~~~d~~~~s~sK~l~~~--~G~~~~~~~~~~~~~~~~~~~~-~~------------------~~~~  236 (347)
T 1jg8_A          181 IASGVPVKEYA---GYADSVMFCLSKGLCAP--VGSVVVGDRDFIERARKARKML-GG------------------GMRQ  236 (347)
T ss_dssp             HHHCCCHHHHH---HTCSEEEEESSSTTCCS--SCEEEEECHHHHHHHHHHHHHH-TC------------------CCSS
T ss_pred             hhcCCChHHhc---ccccEEEEecccccCCC--ceEEEEcCHHHHHHHHHHHHHc-CC------------------chhH
Confidence            11 10000011   15788888999999876  4545555665544322111110 00                  0001


Q ss_pred             CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe-cCCceeEEEEEeecCccCCCchhhHHHHhhhhhH
Q psy12303        348 DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI-LEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITP  426 (480)
Q Consensus       348 ~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~-~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~  426 (480)
                      ..+..++.+..+  +...+.+++..++++++.+.|++ . ++++. .++..+.+++.+ +..  +.+           ..
T Consensus       237 ~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~~~~~~~~~~-~~~--~~~-----------~~  298 (347)
T 1jg8_A          237 AGVLAAAGIIAL--TKMVDRLKEDHENARFLALKLKE-I-GYSVNPEDVKTNMVILRT-DNL--KVN-----------AH  298 (347)
T ss_dssp             THHHHHHHHHHH--HHSSTTHHHHHHHHHHHHHHHHH-H-TCBCCGGGCCSSEEEEEC-TTS--SSC-----------HH
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh-c-CceeccCCCcceEEEEEc-ccc--cCC-----------HH
Confidence            122222222222  11122234445677888899988 6 77653 234445444433 210  110           23


Q ss_pred             HHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        427 ILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       427 ~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ++.+.|.+.|+.+...    + .+++|++ ++..++++|+++++++|++++++
T Consensus       299 ~~~~~l~~~gi~v~~~----~-~~~iRl~-~~~~~~~e~i~~~~~~l~~~l~~  345 (347)
T 1jg8_A          299 GFIEALRNSGVLANAV----S-DTEIRLV-THKDVSRNDIEEALNIFEKLFRK  345 (347)
T ss_dssp             HHHHHHHHHTEECEEE----E-TTEEEEE-CCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEecC----C-CCeEEEE-eCCCCCHHHHHHHHHHHHHHHHh
Confidence            5667777778544332    1 3689999 77788999999999999987654

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.92  E-value=2.8e-23  Score=207.23  Aligned_cols=320  Identities=12%  Similarity=0.091  Sum_probs=209.9

Q ss_pred             hhcChhhHHHHHHHHHHHHHHhCCCC---------CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEec
Q psy12303        104 YEIAPVFILMETVVLEKMRQIIGWQG---------GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTS  174 (480)
Q Consensus       104 ~~~~~~~~~~e~~~~~~la~~~g~~~---------~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~  174 (480)
                      |....+..++.+++.+++++..|.+.         +++++|+|+++|+..++.++.+              ||+ .|++.
T Consensus        74 Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--------------~gd-~Vlv~  138 (425)
T 2r2n_A           74 YSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN--------------PGD-NVLLD  138 (425)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC--------------TTC-EEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC--------------CCC-EEEEe
Confidence            43444556788889999999899853         4799999999999999988754              555 78888


Q ss_pred             CCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHH------HCCCccEEEEe-ccCCCccccccChH---
Q psy12303        175 DQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERK------AKGDIPFFVNC-TSGTTVLGAFDPIE---  244 (480)
Q Consensus       175 ~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~------~~~~~~~~v~~-~~~~~~~G~~~~l~---  244 (480)
                      .++|+++...++..|.   +++.+|.++++ +|+++|++++++..      ..+.++++|++ ++++||||.+.+.+   
T Consensus       139 ~p~y~~~~~~~~~~g~---~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~  214 (425)
T 2r2n_A          139 EPAYSGTLQSLHPLGC---NIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKK  214 (425)
T ss_dssp             SSCCHHHHHHHGGGTC---EEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHH
T ss_pred             CCCcHHHHHHHHHcCC---EEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHH
Confidence            9999999999998887   78888887654 89999999986311      00123667755 68999999998755   


Q ss_pred             HHHHHHHHcCcEEEeeccccccccccccccCcccCC--CCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccc
Q psy12303        245 EIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTG--IERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEY  322 (480)
Q Consensus       245 ~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~  322 (480)
                      +|.++|++||+++++|++|+.+.+......  .+..  ..+.++++.+++|+++.+..+|+++.++ .+..........+
T Consensus       215 ~l~~~a~~~~~~li~De~~~~~~~~g~~~~--~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~-~l~~~l~~~~~~~  291 (425)
T 2r2n_A          215 EIYELARKYDFLIIEDDPYYFLQFNKFRVP--TFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPK-PLIERVILHIQVS  291 (425)
T ss_dssp             HHHHHHHHTTCEEEEECTTGGGBSSSSCCC--CTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEH-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCEEEEECCcccccCCCCCCC--CccccCCCCCEEEEccchhhccCccceEEEecCH-HHHHHHHHHHHHh
Confidence            999999999999999999987544221100  1111  1234577889999998445689998764 3433322110000


Q ss_pred             ccccccccCcccCCCCccccCCCCCCchHHHHHHHHhc----HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCcee
Q psy12303        323 LFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG----DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMV  398 (480)
Q Consensus       323 l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g----~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~  398 (480)
                      .               +   +...+...++...+..++    .+.++++.++..++++++.+.|+++.+++..+..|..+
T Consensus       292 ~---------------~---~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g  353 (425)
T 2r2n_A          292 T---------------L---HPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAG  353 (425)
T ss_dssp             T---------------C---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBS
T ss_pred             c---------------C---CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCce
Confidence            0               0   000011122233333322    23456666777888899999998724676433456666


Q ss_pred             EEEEEeecCccCCCchhhHHHHhhhhhHH-HHHHHHhcccEEEeeeeeCC----cccEEEEecccCCCCHHHHHHHHHHH
Q psy12303        399 NVSFWYLPTRVRNMPHEKRLNILGEITPI-LKGRMMQAGTMMVGYQPLND----LPNFFRNIISSAAVTEGDIDFLLTEM  473 (480)
Q Consensus       399 ~v~f~~~~~~~~~~~~~~~~~~l~~~~~~-i~~~l~~~g~~~~~~~~~~~----~~~~~R~~~~~~~~t~~di~~~~~~l  473 (480)
                      ++++...+....              ..+ +.+.+.+.|+.+.....+..    ..+++|+++. . .++++|++++++|
T Consensus       354 ~~~~~~~~~~~~--------------~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~-~-~~~~~i~~~~~~l  417 (425)
T 2r2n_A          354 MFLWIKVKGIND--------------VKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFS-S-ASPEQMDVAFQVL  417 (425)
T ss_dssp             SEEEEEETTCSC--------------CHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECS-S-CCHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCC--------------HHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeC-C-CCHHHHHHHHHHH
Confidence            665544433211              112 45667778855443222211    1479999943 2 5999999999999


Q ss_pred             HHhhcc
Q psy12303        474 DRLGHD  479 (480)
Q Consensus       474 ~~~~~~  479 (480)
                      ++++++
T Consensus       418 ~~~l~~  423 (425)
T 2r2n_A          418 AQLIKE  423 (425)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987754

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.92  E-value=1.6e-23  Score=206.75  Aligned_cols=309  Identities=13%  Similarity=0.082  Sum_probs=203.5

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      ..++++.+++++|.+  ++++|+|||+|+..++.++.-.             ||+ .|+++..+|+++..++...|.   
T Consensus        41 ~~~l~~~la~~~~~~--~~~~~~~gt~al~~~~~~~~~~-------------~gd-~Vl~~~~~~~~~~~~~~~~g~---  101 (393)
T 1mdo_A           41 NQELEAAFCRLTGNQ--YAVAVSSATAGMHIALMALGIG-------------EGD-EVITPSMTWVSTLNMIVLLGA---  101 (393)
T ss_dssp             HHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTTCC-------------TTC-EEEEESSSCHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHhCCC--cEEEecChHHHHHHHHHHcCCC-------------CCC-EEEeCCCccHhHHHHHHHCCC---
Confidence            345566788888886  5899999999999999876211             445 788999999999999999888   


Q ss_pred             CeEEeeCCCC-CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccccc
Q psy12303        194 NCVEVPSDKR-GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKK  272 (480)
Q Consensus       194 ~v~~v~~~~~-~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~  272 (480)
                      +++.+|.+++ +.+|+++|+++++++      +++|++++   ++|.+.|+++|.++|+++|+++|+|++|+.+......
T Consensus       102 ~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~---~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~  172 (393)
T 1mdo_A          102 NPVMVDVDRDTLMVTPEHIEAAITPQ------TKAIIPVH---YAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGR  172 (393)
T ss_dssp             EEEEECBCTTTCCBCHHHHHHHCCTT------EEEECCBC---GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTE
T ss_pred             EEEEEeccCCcCCCCHHHHHHhcCCC------ceEEEEeC---CCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCe
Confidence            8889998865 789999999998754      88888764   7899999999999999999999999999976443211


Q ss_pred             ccCcccCCCCC-CccceeCcc--ccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccc---cCC--
Q psy12303        273 YRHPRLTGIER-ADSVTWNPH--KLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVI---QCG--  344 (480)
Q Consensus       273 ~~~~~~~~~~~-~D~~~~s~h--K~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~--  344 (480)
                       ..       + .|+++.|+|  |+++++ .+|+++.++++............... .. .......+.+.+   ..|  
T Consensus       173 -~~-------~~~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~~  241 (393)
T 1mdo_A          173 -HI-------GARGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGV-DA-WDRQSGGRAPQAEVLAPGYK  241 (393)
T ss_dssp             -ET-------TSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEEC-C------------CCEESSCCCB
T ss_pred             -ec-------CCCCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHhcCCcc-cc-hhhhcccccccccccccCcc
Confidence             12       2 799999999  999754 56777765565544332111100000 00 000000000110   011  


Q ss_pred             CCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC-----ce-eEEEEEeecCccCCCchhhHH
Q psy12303        345 RHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP-----EM-VNVSFWYLPTRVRNMPHEKRL  418 (480)
Q Consensus       345 r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~-----~~-~~v~f~~~~~~~~~~~~~~~~  418 (480)
                      .+...+.+.+.+..  .+++++..++..++++++.+.|.+ .+ +++...+     .. ..+++.+.+.. .+.      
T Consensus       242 ~~~~~~~~a~~~~~--l~~~~~~~~~~~~~~~~l~~~L~~-~~-~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~------  310 (393)
T 1mdo_A          242 YNLPDLNAAIALAQ--LQKLDALNARRAAIAAQYHQAMAD-LP-FQPLSLPSWEHIHAWHLFIIRVDEAR-CGI------  310 (393)
T ss_dssp             CCCCHHHHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHT-SS-CEECCCCSSCEECCCSCEEEECCHHH-HSS------
T ss_pred             CCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhc-CC-cccccCCCCCCCceeEEEEEEecccc-ccc------
Confidence            12334444443333  455778888888999999999999 65 8875433     12 23444432100 000      


Q ss_pred             HHhhhhhHHHHHHHHhcccEEEeeeeeC--------------Cc-------ccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        419 NILGEITPILKGRMMQAGTMMVGYQPLN--------------DL-------PNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       419 ~~l~~~~~~i~~~l~~~g~~~~~~~~~~--------------~~-------~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                           ...++.+.|.+.|+.+... ...              ..       ..++|++ ++..+|++||++++++|++++
T Consensus       311 -----~~~~l~~~l~~~gi~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~-~~~~~t~~~i~~~~~~l~~~~  383 (393)
T 1mdo_A          311 -----TRDALMASLKTKGIGTGLH-FRAAHTQKYYRERFPTLTLPDTEWNSERICSLP-LFPDMTESDFDRVITALHQIA  383 (393)
T ss_dssp             -----CHHHHHHHHHHTTBCCBCC-CCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEEC-CCTTCCHHHHHHHHHHHHHHH
T ss_pred             -----CHHHHHHHHHhCCCCcccc-cCccccChhhhccCCccCChhHHHHHhCEEEec-CCCCCCHHHHHHHHHHHHHHH
Confidence                 0245777888888543221 100              00       2379999 888899999999999999887


Q ss_pred             cc
Q psy12303        478 HD  479 (480)
Q Consensus       478 ~~  479 (480)
                      +.
T Consensus       384 ~~  385 (393)
T 1mdo_A          384 GQ  385 (393)
T ss_dssp             C-
T ss_pred             hc
Confidence            53

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.92  E-value=4.5e-24  Score=208.36  Aligned_cols=334  Identities=12%  Similarity=0.028  Sum_probs=207.8

Q ss_pred             CccccccCCCChHHhHHHHHHHHcCcC-C---c---chhcChhhHHHHHHHHHHHHHHhCCCCC-C-eEECCChhHHHHH
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIATANTN-M---F---TYEIAPVFILMETVVLEKMRQIIGWQGG-D-SILAPGGSISNLY  144 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~---~---~~~~~~~~~~~e~~~~~~la~~~g~~~~-~-~~~t~ggt~a~~~  144 (480)
                      .|+.+....+.++.++. .+...+... .   .   ....++...++.+++++++++++|.++. + +++|+|||+|+..
T Consensus         5 ~~l~~~~~~~~~~~v~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~   83 (362)
T 2c0r_A            5 AYNFNAGPAALPLEVLE-RAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAM   83 (362)
T ss_dssp             CEECCSSSCCCCHHHHH-HHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHH
T ss_pred             eeeccCCCCCCCHHHHH-HHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHH
Confidence            35555555555666664 444433211 0   0   0112455567778899999999999764 5 4688999999999


Q ss_pred             HHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhH--HHHHHHcCCCCCCeEEeeCCC--CC--CCCHHHHHHHHHHH
Q psy12303        145 AFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV--RSCAAVCGLGTDNCVEVPSDK--RG--RLIPSELERLVLER  218 (480)
Q Consensus       145 al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~--~~~~~~~g~~~~~v~~v~~~~--~~--~~d~~~L~~~i~~~  218 (480)
                      ++.++.+              ||+ .|++....|++.  ...++..|    +++.++.+.  ++  .+|.++++  +++ 
T Consensus        84 ~~~~l~~--------------~gd-~vl~~~~~~~~~~~~~~~~~~g----~~~~v~~~~~~~~~~~~~~~~~~--i~~-  141 (362)
T 2c0r_A           84 IPMNFLK--------------EGQ-TANYVMTGSWASKALKEAKLIG----DTHVAASSEASNYMTLPKLQEIQ--LQD-  141 (362)
T ss_dssp             HHHHHCC--------------TTC-EEEEEECSHHHHHHHHHHHHHS----CEEEEEECGGGTTCSCCCGGGCC--CCT-
T ss_pred             HHHhcCC--------------CCC-eEEEEecCcHhHHHHHHHHHhC----CeEEEecccccccccCCCHHHcc--cCC-
Confidence            9887643              556 555554555553  34555555    456777652  22  35666553  433 


Q ss_pred             HHCCCccEEEEeccCCCccccc-cChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCC
Q psy12303        219 KAKGDIPFFVNCTSGTTVLGAF-DPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGT  297 (480)
Q Consensus       219 ~~~~~~~~~v~~~~~~~~~G~~-~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~  297 (480)
                           +|++|++++++|+||.+ .|+++|      +|+++|+|++|+.+..+.+.         ...|+++.++||+++ 
T Consensus       142 -----~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~~---------~~~d~~~~s~~K~~g-  200 (362)
T 2c0r_A          142 -----NAAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSRPFDL---------NQFGLVYAGAQKNLG-  200 (362)
T ss_dssp             -----TEEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTSSCCCG---------GGCSEEEEETTTTTC-
T ss_pred             -----CcCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccCCccch---------hHCcEEEEecccccc-
Confidence                 38999999999999995 888887      89999999999987654321         134899999999997 


Q ss_pred             cccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC-CCchHHHHHHHHhcHH-HHHHHHHHHHHHH
Q psy12303        298 LLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-NDIFKLWLQWRAKGDE-GFEKQIDRLMELA  375 (480)
Q Consensus       298 p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~~l~~~g~~-~~~~~~~~~~~l~  375 (480)
                      |.|+|++++++. .+.......+ ++.......    ..+  ....+-. ....++..+++.+... +++++.++..+++
T Consensus       201 ~~G~G~l~~~~~-~~~~l~~~~~-~~~~~~~~~----~~~--~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~  272 (362)
T 2c0r_A          201 PSGVTVVIVRED-LVAESPKHLP-TMLRYDTYV----KNN--SLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKA  272 (362)
T ss_dssp             CSSCEEEEEEGG-GSSSCCTTSC-GGGCHHHHH----HTT--TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             CcCcEEEEEcHH-HHhhccccCc-hHHhHHHHh----hcc--CcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            778999998654 3322221111 111000000    000  0001111 1233444555544343 6889999999999


Q ss_pred             HHHHHHHhcCCCCe-EEecCC---ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccE
Q psy12303        376 EYMVKKIKSMPDKF-YLILEP---EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNF  451 (480)
Q Consensus       376 ~~l~~~l~~~~~g~-~~~~~~---~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~  451 (480)
                      +++.+.|++ .+++ ++..++   ...+++|.+ +..            ..  ..++.+.|.+.|++ +.++ ... .++
T Consensus       273 ~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~------------~~--~~~~~~~L~~~gi~-~~~g-~~~-~~~  333 (362)
T 2c0r_A          273 SLIYDAIDQ-SGGFYRGCVDVDSRSDMNITFRL-ASE------------EL--EKEFVKASEQEGFV-GLKG-HRS-VGG  333 (362)
T ss_dssp             HHHHHHHHT-STTSSEESSCGGGBCSSEEEEEC-SCH------------HH--HHHHHHHHHHTTEE-SCBC-CTT-TCS
T ss_pred             HHHHHHHHH-cCCccccCCChHHcCCcEEEEEc-CCc------------ch--HHHHHHHHHHCCCe-eccC-CCC-CCE
Confidence            999999999 6546 775432   234455532 211            00  24566778788853 3321 111 357


Q ss_pred             EEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        452 FRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       452 ~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +|+| .+..++++|++++++.|++++++
T Consensus       334 iRis-~~~~~~~e~i~~l~~~l~~~~~~  360 (362)
T 2c0r_A          334 LRAS-IYNAVPYESCEALVQFMEHFKRS  360 (362)
T ss_dssp             EEEE-CCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHHHHHHh
Confidence            9999 67788999999999999987653

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.92  E-value=1.8e-23  Score=205.99  Aligned_cols=219  Identities=14%  Similarity=0.068  Sum_probs=165.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH----HH
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA----AV  187 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~----~~  187 (480)
                      ....++++.+++++|.+  .+++++|||+|+..++.++..              +|+ .|+++...|.+....+    ..
T Consensus        66 ~~~~~l~~~la~~~g~~--~~~~~~sGt~A~~~al~~~~~--------------~gd-~Vi~~~~~y~~~~~~~~~~~~~  128 (392)
T 3qhx_A           66 PTRTALEAALAAVEDAA--FGRAFSSGMAAADCALRAMLR--------------PGD-HVVIPDDAYGGTFRLIDKVFTG  128 (392)
T ss_dssp             HHHHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHHCC--------------TTC-EEEEETTCCHHHHHHHHHTGGG
T ss_pred             hHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHhC--------------CCC-EEEEeCCCcchHHHHHHHHHHh
Confidence            33455677799999987  489999999999999987743              445 7888889998877766    34


Q ss_pred             cCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccc
Q psy12303        188 CGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGL  267 (480)
Q Consensus       188 ~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~  267 (480)
                      .|.   ++++++.+     |+++|+++++++      +++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+.
T Consensus       129 ~g~---~~~~v~~~-----d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~  194 (392)
T 3qhx_A          129 WNV---EYTPVALA-----DLDAVRAAIRPT------TRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPA  194 (392)
T ss_dssp             GTC---EEEEECTT-----CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred             cCc---EEEEeCCC-----CHHHHHHhhCCC------CeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccc
Confidence            455   78888876     899999999765      9999999999999999999999999999999999999998664


Q ss_pred             cccccccCcccCCCCCCccceeCccccCCCcc--cceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCC
Q psy12303        268 LLSKKYRHPRLTGIERADSVTWNPHKLMGTLL--QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGR  345 (480)
Q Consensus       268 ~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~--~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r  345 (480)
                      .. .....       ++|+++.|+||+++++.  ..|+++.+++.+..........                     .+.
T Consensus       195 ~~-~~~~~-------~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~---------------------~g~  245 (392)
T 3qhx_A          195 LQ-QPLSL-------GADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNG---------------------AGA  245 (392)
T ss_dssp             TC-CGGGG-------TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH---------------------HCC
T ss_pred             cC-ChHHh-------CCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHh---------------------cCC
Confidence            32 22233       78999999999999764  3788777665554432211000                     111


Q ss_pred             CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        346 HNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       346 ~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                      ....+.+|+.++.  .+.+..+.++..++++++.+.|++ .|.+..+.
T Consensus       246 ~~~~~~~~~~~~~--l~~l~~~~~~~~~~~~~l~~~L~~-~~~v~~v~  290 (392)
T 3qhx_A          246 VPGPFDAYLTMRG--LKTLVLRMQRHSENAAAVAEFLAE-HPAISTVL  290 (392)
T ss_dssp             CCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHT-CTTEEEEE
T ss_pred             CCCHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhc-CCCcceEE
Confidence            2345566666654  344667778888999999999999 88886553

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.92  E-value=6e-23  Score=202.72  Aligned_cols=317  Identities=13%  Similarity=0.033  Sum_probs=205.5

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      ..++++.+++++|.+  ++++++|||+|+..++.++.-.             ||+ .|+++..+|+++..++...|.   
T Consensus        34 ~~~l~~~la~~~~~~--~v~~~~ggt~al~~~~~~l~~~-------------~gd-~Vl~~~~~~~~~~~~~~~~g~---   94 (394)
T 1o69_A           34 VNRFEQSVKDYSKSE--NALALNSATAALHLALRVAGVK-------------QDD-IVLASSFTFIASVAPICYLKA---   94 (394)
T ss_dssp             HHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTTCC-------------TTC-EEEEESSSCGGGTHHHHHTTC---
T ss_pred             HHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCCC-------------CCC-EEEECCCccHHHHHHHHHcCC---
Confidence            345566788888874  5999999999999999876211             445 788999999999999999887   


Q ss_pred             CeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccc
Q psy12303        194 NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       194 ~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~  273 (480)
                      +++.+|+++++.+|+++|++++++.   +.++++|++++   ++|...++++|.++|+++|+++|+|++|+.+..+.+..
T Consensus        95 ~~~~v~~~~~~~~d~~~l~~~i~~~---~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~  168 (394)
T 1o69_A           95 KPVFIDCDETYNIDVDLLKLAIKEC---EKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKA  168 (394)
T ss_dssp             EEEEECBCTTSSBCHHHHHHHHHHC---SSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEE
T ss_pred             EEEEEEeCCCCCcCHHHHHHHHhcc---cCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCcc
Confidence            8889999888899999999999762   11277888875   78999999999999999999999999999544432221


Q ss_pred             cCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC--CchH
Q psy12303        274 RHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN--DIFK  351 (480)
Q Consensus       274 ~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~--~~l~  351 (480)
                          ...+..+|+++++.||.++ |.++|+++++++.+..........+.....     .+..    ...+.++  ..+.
T Consensus       169 ----~~~~~~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~-----~~~~----~~~g~~~~~~~~~  234 (394)
T 1o69_A          169 ----LGTFGEFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENCL-----HYEH----LDYGYNYRLSNVL  234 (394)
T ss_dssp             ----TTSSSSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSSS-----SCCC----SSCCCBCBCCHHH
T ss_pred             ----cccccCcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccCc-----cccc----cccCcccCcCHHH
Confidence                1112258899999999887 578899998766655443321111110000     0000    0112222  2233


Q ss_pred             HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc---ee--EEEEEeecCc----cCCCc-----hhhH
Q psy12303        352 LWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE---MV--NVSFWYLPTR----VRNMP-----HEKR  417 (480)
Q Consensus       352 ~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~---~~--~v~f~~~~~~----~~~~~-----~~~~  417 (480)
                      +.+++..  .+.+++.+++..++++++.+.|++ .  ++++.++.   .+  ++++.+.+..    ..+..     ....
T Consensus       235 aa~~l~~--l~~l~~~~~~~~~~~~~l~~~L~~-~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  309 (394)
T 1o69_A          235 GAIGVAQ--MEVLEQRVLKKREIYEWYKEFLGE-Y--FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNIT  309 (394)
T ss_dssp             HHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTT-T--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCC
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcc-c--ccccCCCCCCcceeEEEEEEecchhhccccccccccccccccc
Confidence            3333333  345677889999999999999998 5  77654321   12  3455442110    00000     0000


Q ss_pred             HHHhhhhhHHHHHHHHhcccEEEeee-------eeCCc------------ccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        418 LNILGEITPILKGRMMQAGTMMVGYQ-------PLNDL------------PNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       418 ~~~l~~~~~~i~~~l~~~g~~~~~~~-------~~~~~------------~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      . ..+  ..++.+.|.+.|+.+....       .....            ...+|+. .++.+|++||++++++|+++.+
T Consensus       310 ~-~~~--~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~edi~~~~~~l~~~~~  385 (394)
T 1o69_A          310 L-HPK--ISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLP-SGTAMSKDDVYEISKLILKSIK  385 (394)
T ss_dssp             C-CHH--HHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEEC-CCTTCCHHHHHHHHHHHHHHHC
T ss_pred             c-ccC--HHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEcc-CCCCCCHHHHHHHHHHHHHHHh
Confidence            0 001  2456777878875432210       00000            1456777 6899999999999999998764

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.92  E-value=2.6e-23  Score=205.59  Aligned_cols=284  Identities=12%  Similarity=0.006  Sum_probs=192.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH----HH
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA----AV  187 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~----~~  187 (480)
                      ....++++.+++++|.+  ..+++++||+|+..++.++..              +|+ .|+++...|.++...+    ..
T Consensus        65 ~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~~--------------~gd-~vl~~~~~~~~~~~~~~~~~~~  127 (398)
T 1gc0_A           65 PTLNLLEARMASLEGGE--AGLALASGMGAITSTLWTLLR--------------PGD-EVLLGNTLYGCTFAFLHHGIGE  127 (398)
T ss_dssp             HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHCC--------------TTC-EEEEESSCCSHHHHHHHHTGGG
T ss_pred             hHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHhc--------------CCC-EEEEeCCCchhHHHHHHHHHHH
Confidence            44556677799999987  467778889999999988743              445 7888889999988776    34


Q ss_pred             cCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccc
Q psy12303        188 CGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGL  267 (480)
Q Consensus       188 ~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~  267 (480)
                      .|+   +++.++.+     |+++|+++++++      +++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+.
T Consensus       128 ~g~---~~~~~~~~-----d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~  193 (398)
T 1gc0_A          128 FGV---KLRHVDMA-----DLQALEAAMTPA------TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPY  193 (398)
T ss_dssp             GTC---EEEEECTT-----CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHH
T ss_pred             cCC---EEEEECCC-----CHHHHHHhcCCC------CeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccc
Confidence            455   77788764     899999988764      8999999999999999999999999999999999999999876


Q ss_pred             cccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhH-hhhcCCcccccccccccCcccCCCCccccCC
Q psy12303        268 LLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLI-SCNQMSAEYLFMQDKLYDVRYDTGDKVIQCG  344 (480)
Q Consensus       268 ~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  344 (480)
                      ...+. ..       ++|+++.|+||++++|.+  .|+++.++. .+. ..... ..++.                   +
T Consensus       194 ~~~~~-~~-------~~d~~~~S~sK~~~~~~~~~~G~l~~~~~-~~~~~~~~~-~~~~~-------------------~  244 (398)
T 1gc0_A          194 LQRPL-EL-------GADLVVHSATKYLSGHGDITAGIVVGSQA-LVDRIRLQG-LKDMT-------------------G  244 (398)
T ss_dssp             HCCGG-GG-------TCSEEEEETTTTTTCSSSCCCEEEEECHH-HHHHHHHTH-HHHHT-------------------C
T ss_pred             cCCch-hh-------CceEEEECCccccCCCCCCeEEEEEEChH-HHHHHHHHH-hhccC-------------------C
Confidence            54322 23       689999999999998765  477776543 332 22110 00000                   0


Q ss_pred             CCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe--------------cC---CceeEEEEEeecC
Q psy12303        345 RHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI--------------LE---PEMVNVSFWYLPT  407 (480)
Q Consensus       345 r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~--------------~~---~~~~~v~f~~~~~  407 (480)
                      .....+.+|+.++.+  +.+..+.++..++++.+.+.|++ .+++.-+              .+   ...++++|.+...
T Consensus       245 ~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~-~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  321 (398)
T 1gc0_A          245 AVLSPHDAALLMRGI--KTLNLRMDRHCANAQVLAEFLAR-QPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG  321 (398)
T ss_dssp             CCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHT-CTTEEEEEEC----------------CCTTEEEEEETTH
T ss_pred             CCCCHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHhc-CCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC
Confidence            012344566555543  34566677778888888888888 6655422              11   1345566643210


Q ss_pred             ccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEee--ee----------------------eCCc-ccEEEEecccCCCC
Q psy12303        408 RVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGY--QP----------------------LNDL-PNFFRNIISSAAVT  462 (480)
Q Consensus       408 ~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~--~~----------------------~~~~-~~~~R~~~~~~~~t  462 (480)
                                       .....+.+.+.+......  +.                      ..+. .+++|+| ++..++
T Consensus       322 -----------------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis-~g~~~~  383 (398)
T 1gc0_A          322 -----------------IGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLS-VGLEDI  383 (398)
T ss_dssp             -----------------HHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEE-CCSSCH
T ss_pred             -----------------HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEE-eCcCCH
Confidence                             012233333344322210  00                      0011 3799999 778899


Q ss_pred             HHHHHHHHHHHHHh
Q psy12303        463 EGDIDFLLTEMDRL  476 (480)
Q Consensus       463 ~~di~~~~~~l~~~  476 (480)
                      +++|+.+.++|+++
T Consensus       384 ~~~i~~l~~al~~~  397 (398)
T 1gc0_A          384 DDLLADVQQALKAS  397 (398)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999999875

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.92  E-value=7.5e-25  Score=219.34  Aligned_cols=288  Identities=13%  Similarity=0.052  Sum_probs=189.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG  191 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~  191 (480)
                      ....++++++++ +|.+ ..+++|+|+|+||..++.++..              ||+ .|+++..+|.++..++...|. 
T Consensus        57 ~~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~~--------------~gd-~Vlv~~~~h~s~~~~~~~~G~-  118 (446)
T 2x3l_A           57 EVILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFSQ--------------KKG-DILMARNVHKSVLHALDISQQ-  118 (446)
T ss_dssp             SHHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTTT--------------SSS-CEEECTTCCHHHHHHHHHHTC-
T ss_pred             hHHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhcC--------------CCC-EEEEecCccHHHHHHHHHcCC-
Confidence            345677888999 9987 4689999999999999987743              445 788999999999999999988 


Q ss_pred             CCCeEEeeC--CCC----CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccc
Q psy12303        192 TDNCVEVPS--DKR----GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGG  265 (480)
Q Consensus       192 ~~~v~~v~~--~~~----~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~  265 (480)
                        ++++++.  +++    +.+|+++|   +.++      +++|++++ +|++|.+.|+++|.++|++||+|+|+|+||++
T Consensus       119 --~~~~v~~~~~~~~~~~~~~d~~~l---~~~~------~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~  186 (446)
T 2x3l_A          119 --EGHFIETHQSPLTNHYNKVNLSRL---NNDG------HKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA  186 (446)
T ss_dssp             --CEEECEEEECTTTSSEEEEEC----------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT
T ss_pred             --eEEEEeCeeccccCcCCCCCHHHH---cCCC------ceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhh
Confidence              7888887  655    56888877   3333      78999999 46699999999999999999999999999998


Q ss_pred             cccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhh-HhhhcCCcccccccccccCcccCCCCccccCC
Q psy12303        266 GLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLL-ISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCG  344 (480)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  344 (480)
                      ...+.+. .. ..... ++|+++.|+||+++++.++|++++++.... .....  ......          .      .+
T Consensus       187 ~~~f~~~-~~-~~~~~-g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~--~~~~~~----------~------~s  245 (446)
T 2x3l_A          187 HFGLQGF-PD-STLNY-QADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIE--YLSYFQ----------T------SS  245 (446)
T ss_dssp             TTTSTTS-CC-CGGGG-TCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHH--HHHHHS----------C------SS
T ss_pred             hhccCCC-CC-ChHHc-CCCEEEECCccccccccccEEEEEcCCcCCHHHHHH--HHHHHc----------C------CC
Confidence            3222221 11 11111 579999999999988889999998765321 11100  000000          0      00


Q ss_pred             CCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhh
Q psy12303        345 RHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGE  423 (480)
Q Consensus       345 r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~  423 (480)
                      ... ...++..+++.+...+.+++.++..++++++++.      +++++.+.....+.+.. + ...             
T Consensus       246 ~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~------g~~~~~~~~~~~l~i~~-~-~~~-------------  304 (446)
T 2x3l_A          246 PSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK------GFEMLQVDDPLKLLIKY-E-GFT-------------  304 (446)
T ss_dssp             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH------TCEEEECSSTTEEEEEC-T-TSC-------------
T ss_pred             chHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc------CCEECcCCCCeEEEEEe-C-CcC-------------
Confidence            001 1122333344333333333566777777776665      56665433222344432 1 111             


Q ss_pred             hhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        424 ITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       424 ~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                       ..++.+.|.++|+ .+...   + .+++|++ ++..+|++++ +++++|+++.++
T Consensus       305 -~~~l~~~L~~~GI-~v~~~---g-~~~iRi~-~~~~~t~e~i-~l~~aL~~~~~~  352 (446)
T 2x3l_A          305 -GHDIQNWFMNAHI-YLELA---D-DYQALAI-LPLWHHDDTY-LFDSLLRKIEDM  352 (446)
T ss_dssp             -HHHHHHHHHHTTE-EESEE---C-SSCEEEE-CCCCCTTCCC-CHHHHHHHHHTC
T ss_pred             -HHHHHHHHHHCCC-EEEec---C-CCEEEEE-eecCCCHHHH-HHHHHHHHHHHh
Confidence             2356778878874 44321   3 4689999 7788899999 999999988654

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.92  E-value=2e-23  Score=206.37  Aligned_cols=287  Identities=14%  Similarity=0.067  Sum_probs=192.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH----H
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA----A  186 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~----~  186 (480)
                      .....++++++++++|.+  +.+++++||+|+..++.++..              ||+ .|+++...|+++...+    .
T Consensus        63 ~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~~--------------~gd-~vi~~~~~~~~~~~~~~~~~~  125 (398)
T 2rfv_A           63 NPTTDALEKKLAVLERGE--AGLATASGISAITTTLLTLCQ--------------QGD-HIVSASAIYGCTHAFLSHSMP  125 (398)
T ss_dssp             CHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHCC--------------TTC-EEEEESSSCHHHHHHHHTHHH
T ss_pred             ChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHhC--------------CCC-EEEEcCCCcccHHHHHHHHHH
Confidence            455667888899999987  477888899999999988743              445 7888899999988876    6


Q ss_pred             HcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccc
Q psy12303        187 VCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGG  266 (480)
Q Consensus       187 ~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~  266 (480)
                      ..|.   +++.+|.+     |+++|+++++++      +++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+
T Consensus       126 ~~g~---~~~~v~~~-----d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~  191 (398)
T 2rfv_A          126 KFGI---NVRFVDAA-----KPEEIRAAMRPE------TKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSP  191 (398)
T ss_dssp             HTTC---EEEEECTT-----SHHHHHHHCCTT------EEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred             HcCC---EEEEeCCC-----CHHHHHHhcCCC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccc
Confidence            6676   78888875     899999988754      899999999999999999999999999999999999999977


Q ss_pred             ccccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhH-hhhcCCcccccccccccCcccCCCCccccC
Q psy12303        267 LLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLI-SCNQMSAEYLFMQDKLYDVRYDTGDKVIQC  343 (480)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  343 (480)
                      ....+ ...       ++|+++.|+||++++|..  +|+++.++ +.+. ....    +....                -
T Consensus       192 ~~~~~-~~~-------~~di~~~s~sK~~~~~g~~~~G~~~~~~-~~~~~~~~~----~~~~~----------------~  242 (398)
T 2rfv_A          192 YCQQP-LQL-------GADIVVHSVTKYINGHGDVIGGIIVGKQ-EFIDQARFV----GLKDI----------------T  242 (398)
T ss_dssp             TTCCG-GGG-------TCSEEEEETTTTTTCSSCCCCEEEEECH-HHHHHHHHT----HHHHT----------------T
T ss_pred             ccCCc-hhh-------CCcEEEEeCcccccCCCCceEEEEEECH-HHHHHHHHH----HHHhC----------------C
Confidence            65322 122       689999999999988765  48877654 3333 2211    11000                0


Q ss_pred             CCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe--------------cC---CceeEEEEEeec
Q psy12303        344 GRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI--------------LE---PEMVNVSFWYLP  406 (480)
Q Consensus       344 ~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~--------------~~---~~~~~v~f~~~~  406 (480)
                      +.....+..++.+..+  +.+....++..++++.+.+.|++ .+.+.-+              .+   ...++++|.+..
T Consensus       243 ~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~  319 (398)
T 2rfv_A          243 GGCMSPFNAWLTLRGV--KTLGIRMERHCENALKIARFLEG-HPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG  319 (398)
T ss_dssp             CCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred             CCCCCHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence            0012344555555544  22344556666777778888877 5443322              11   135666664321


Q ss_pred             CccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeee----------------------eCCc-ccEEEEecccCCCCH
Q psy12303        407 TRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQP----------------------LNDL-PNFFRNIISSAAVTE  463 (480)
Q Consensus       407 ~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~----------------------~~~~-~~~~R~~~~~~~~t~  463 (480)
                      ..       +.       ...+.+.+...| +.++.+.                      ..+. .+++|++ ++..+++
T Consensus       320 ~~-------~~-------~~~l~~~~~~~~-i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls-~~~~~~~  383 (398)
T 2rfv_A          320 GL-------EA-------GRRMINSVELCL-LAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLS-VGLEDPE  383 (398)
T ss_dssp             HH-------HH-------HHHHHTTCSSSE-ECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEE-CCSSCHH
T ss_pred             CH-------HH-------HHHHHHhCCcce-eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEE-ecCCCHH
Confidence            00       00       112333332222 2111110                      0111 4799999 7789999


Q ss_pred             HHHHHHHHHHHHh
Q psy12303        464 GDIDFLLTEMDRL  476 (480)
Q Consensus       464 ~di~~~~~~l~~~  476 (480)
                      ++|+.++++|+++
T Consensus       384 ~~i~~l~~al~~~  396 (398)
T 2rfv_A          384 DIINDLEHAIRKA  396 (398)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999875

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.92  E-value=6.9e-23  Score=201.75  Aligned_cols=284  Identities=14%  Similarity=0.095  Sum_probs=194.8

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH----HHcC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA----AVCG  189 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~----~~~g  189 (480)
                      ..++++.+++++|.+ . .+++++||+|+..++.++..              +|+ .|+++..+|.++....    ...|
T Consensus        54 ~~~l~~~la~~~~~~-~-~i~~~sGt~a~~~~~~~~~~--------------~g~-~vl~~~~~~~~~~~~~~~~~~~~g  116 (386)
T 1cs1_A           54 RDVVQRALAELEGGA-G-AVLTNTGMSAIHLVTTVFLK--------------PGD-LLVAPHDCYGGSYRLFDSLAKRGC  116 (386)
T ss_dssp             HHHHHHHHHHHHTCS-E-EEEESSHHHHHHHHHHHHCC--------------TTC-EEEEETTCCHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHhCCC-c-EEEeCCHHHHHHHHHHHHhC--------------CCC-EEEEecCCcHhHHHHHHHHHHhcC
Confidence            445667788888887 3 45556669999999987743              445 7888888998866554    3344


Q ss_pred             CCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccc
Q psy12303        190 LGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLL  269 (480)
Q Consensus       190 ~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~  269 (480)
                      .   +++.++.+     |+++|+++++++      +++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+...
T Consensus       117 ~---~~~~~~~~-----d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~  182 (386)
T 1cs1_A          117 Y---RVLFVDQG-----DEQALRAALAEK------PKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQ  182 (386)
T ss_dssp             C---EEEEECTT-----CHHHHHHHHHTC------CSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC
T ss_pred             C---EEEEeCCC-----CHHHHHHhhccC------CcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC
Confidence            4   77888765     899999999754      889999999999999999999999999999999999999988654


Q ss_pred             cccccCcccCCCCCCccceeCccccCCCcccc--eEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC
Q psy12303        270 SKKYRHPRLTGIERADSVTWNPHKLMGTLLQC--STIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN  347 (480)
Q Consensus       270 ~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~--g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~  347 (480)
                      .+. ..       ++|+++.|+||++++|.+.  |+++++++++..........+                     +...
T Consensus       183 ~~~-~~-------~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~---------------------~~~~  233 (386)
T 1cs1_A          183 NPL-AL-------GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNI---------------------GVTG  233 (386)
T ss_dssp             CGG-GG-------TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH---------------------TCBC
T ss_pred             Ccc-cc-------CceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhc---------------------CCCC
Confidence            322 23       7899999999999988763  888877644444332111000                     0002


Q ss_pred             CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC-----------------ceeEEEEEeecCccC
Q psy12303        348 DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP-----------------EMVNVSFWYLPTRVR  410 (480)
Q Consensus       348 ~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~-----------------~~~~v~f~~~~~~~~  410 (480)
                      ..+..++.+..  .+.+....++..++++++.+.|++ ++.+.-+..+                 ..++++|.+.. .  
T Consensus       234 ~~~~~~~~~~~--l~~~~~~~~~~~~~~~~l~~~l~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~--  307 (386)
T 1cs1_A          234 GAFDSYLLLRG--LRTLVPRMELAQRNAQAIVKYLQT-QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG-D--  307 (386)
T ss_dssp             CHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-C--
T ss_pred             CHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC-C--
Confidence            23344444433  234556667778888899999988 7776543211                 25566665321 0  


Q ss_pred             CCchhhHHHHhhhhhHHHHHHHHhcccEEEe--ee------------e----------eCCc-ccEEEEecccCCCCHHH
Q psy12303        411 NMPHEKRLNILGEITPILKGRMMQAGTMMVG--YQ------------P----------LNDL-PNFFRNIISSAAVTEGD  465 (480)
Q Consensus       411 ~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~--~~------------~----------~~~~-~~~~R~~~~~~~~t~~d  465 (480)
                                    ...+.+.|.+.|++...  .+            .          ..+. .+++|++ ++..+++++
T Consensus       308 --------------~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis-~~~~~~~~~  372 (386)
T 1cs1_A          308 --------------EQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRIS-TGIEDGEDL  372 (386)
T ss_dssp             --------------HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEE-CCSSCHHHH
T ss_pred             --------------HHHHHHHHHhCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEE-EccCCHHHH
Confidence                          12345666677754321  11            0          0011 4799999 677899999


Q ss_pred             HHHHHHHHHHhhc
Q psy12303        466 IDFLLTEMDRLGH  478 (480)
Q Consensus       466 i~~~~~~l~~~~~  478 (480)
                      |+.+.++|+++.+
T Consensus       373 i~~l~~al~~~~~  385 (386)
T 1cs1_A          373 IADLENGFRAANK  385 (386)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999988754

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.92  E-value=1.5e-23  Score=208.79  Aligned_cols=343  Identities=8%  Similarity=-0.053  Sum_probs=216.2

Q ss_pred             CCCCCccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHH
Q psy12303         70 TGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLA  148 (480)
Q Consensus        70 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~  148 (480)
                      .....|.+.-.....++.+ .+.+..........|....+..++.+++.+++....+.+ +.++++|+|||+|+..++.+
T Consensus        43 l~~g~~~~~~~~~~~~~~v-~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~  121 (418)
T 3rq1_A           43 GTLGAIHDEEGNLVFLKTV-KEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHN  121 (418)
T ss_dssp             CCSSCCBCTTSCBCCCHHH-HHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHH
T ss_pred             CCCCcccCCCCCccccHHH-HHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHH
Confidence            3334443332233333433 344544333223345445556788888778776666543 12699999999999999987


Q ss_pred             HHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCC-CCCCCCHHHHHHHHHHHHHCCCccE-
Q psy12303        149 ARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD-KRGRLIPSELERLVLERKAKGDIPF-  226 (480)
Q Consensus       149 ~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~~~~~~-  226 (480)
                      ..+              ||+ .|+++.++|.++...+...|.   +++.+|.+ +++.+|+++|++++++....  +++ 
T Consensus       122 l~~--------------~gd-~Vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~d~~~l~~~l~~~~~~--~~~~  181 (418)
T 3rq1_A          122 YTE--------------PGD-EVLTADWYWGAYRVICSDTGR---TLVTYSLFDEHNNFNHEAFQNRVNELAAK--QTNV  181 (418)
T ss_dssp             HSC--------------TTC-EEEEESSCCTHHHHHHHHTTC---EEEEECSBCTTSSBCHHHHHHHHHHHHHH--CSEE
T ss_pred             hcC--------------CCC-EEEECCCCchhHHHHHHHcCC---EEEEEeeeCCCCCcCHHHHHHHHHHhhcc--CCCE
Confidence            754              556 788888999999999999998   88899984 45789999999999863211  144 


Q ss_pred             EEEeccC-CCccccccChHHHH---HHHH------HcCcEEEeeccccccccccccccC--cccCCCCCCc---cceeCc
Q psy12303        227 FVNCTSG-TTVLGAFDPIEEIA---DICQ------KYNMWLHVDAAWGGGLLLSKKYRH--PRLTGIERAD---SVTWNP  291 (480)
Q Consensus       227 ~v~~~~~-~~~~G~~~~l~~I~---~i~~------~~~~~l~vD~a~~~~~~~~~~~~~--~~~~~~~~~D---~~~~s~  291 (480)
                      +|+++++ +||||.+.|.+++.   ++|+      +||+++++|++|.++.........  ....++ ..|   +++.|+
T Consensus       182 ~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~  260 (418)
T 3rq1_A          182 VVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHL-PKEILTCVCYSL  260 (418)
T ss_dssp             EEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTC-CTTEEEEEEEES
T ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhc-CCCceEEEEEeC
Confidence            8888889 99999998865555   5555      899999999999776542211100  012222 123   566799


Q ss_pred             cccCCC-cccceEEEE--eCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcH-------
Q psy12303        292 HKLMGT-LLQCSTIHF--KQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGD-------  361 (480)
Q Consensus       292 hK~~~~-p~~~g~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~-------  361 (480)
                      +|.++. +.++|+++.  +++++........ .+.....           +     .....+...+....+..       
T Consensus       261 sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~-----~~~~~~~~~a~~~~l~~~~~~~~~  323 (418)
T 3rq1_A          261 SKGFTMYGQRVGAMIGISDDEEIADEFFEVN-KSTSRAT-----------W-----SNICRPAMRTMANIVADPAKFKEY  323 (418)
T ss_dssp             TTTTTCCSSCCEEEEEEESSHHHHHHHHHHH-HHHHHHH-----------T-----SSCCHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCCCcCcCCcceEEEEEeCCHHHHHHHHHHH-HHHHhhc-----------c-----CCCchHHHHHHHHHhCCHHHHHHH
Confidence            999874 467888876  2555544332110 0000000           0     00123333333333321       


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEE
Q psy12303        362 -EGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMV  440 (480)
Q Consensus       362 -~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~  440 (480)
                       +...++.++..++++++.+.|++ + |+++. +|..+.++|...+ .                ..++.+.|.+.|+.+ 
T Consensus       324 ~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~~~~~~~~~~~-~----------------~~~~~~~l~~~gi~v-  382 (418)
T 3rq1_A          324 EAERNCYYQLIRDRADIFKQEAAQ-V-GLPML-PYRGGFFITIPTD-S----------------ANAICEELKKEHIYV-  382 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-H-TCCCC-CCCSSSEEEEECT-T----------------HHHHHHHHHHTTEEC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-c-CCCCC-CCCceEEEEcCCC-C----------------HHHHHHHHHhCCEEE-
Confidence             22335567778888999999998 5 88764 5666655553211 0                235667777888544 


Q ss_pred             eeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        441 GYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       441 ~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+    + .+++|+++ . ..++++|++++++|++++++
T Consensus       383 ~~----g-~~~iRis~-~-~~~~~~i~~~~~~l~~~l~~  414 (418)
T 3rq1_A          383 IA----L-ANGIRIAA-C-GIPKCQMTGLAEKIYNAMKS  414 (418)
T ss_dssp             EE----C-SSEEEEEG-G-GSCHHHHTTHHHHHHHHHHH
T ss_pred             ec----C-CCCeEEEE-e-cCCHHHHHHHHHHHHHHHHH
Confidence            33    2 46899994 3 46899999999999998765

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.91  E-value=5.9e-24  Score=211.73  Aligned_cols=306  Identities=15%  Similarity=0.110  Sum_probs=193.8

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHH---HHH
Q psy12303        110 FILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS---CAA  186 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~---~~~  186 (480)
                      ...+++.+++++++++|.++..+++ ++||+|+..++.++..              ||+ .|+++..+|.++..   ...
T Consensus        74 ~~~~~~~~~~~la~~~~~~~~~v~~-~sGs~a~~~a~~~~~~--------------~gd-~v~~~~~~~~~~~~~~~~~~  137 (420)
T 3gbx_A           74 VDVVEQLAIDRAKELFGADYANVQP-HSGSQANFAVYTALLQ--------------PGD-TVLGMNLAQGGHLTHGSPVN  137 (420)
T ss_dssp             CHHHHHHHHHHHHHHHTCSEEECCC-SSHHHHHHHHHHHHCC--------------TTC-EEEEEEEC------------
T ss_pred             HHHHHHHHHHHHHHHhCCCCceeEe-cCcHHHHHHHHHHhcC--------------CCC-EEEecchhhcceeccchhhh
Confidence            3566777789999999997654444 5568999999887743              556 78888888887442   222


Q ss_pred             HcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccc
Q psy12303        187 VCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGG  266 (480)
Q Consensus       187 ~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~  266 (480)
                      ..|.+. ..+.++.+.++.+|+++|++++++.     ++++|+++++++  |...|+++|.++|++||+++|+|++|+.+
T Consensus       138 ~~g~~~-~~~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~--~~~~~l~~l~~l~~~~~~~li~De~~~~~  209 (420)
T 3gbx_A          138 FSGKLY-NIVPYGIDESGKIDYDEMAKLAKEH-----KPKMIIGGFSAY--SGVVDWAKMREIADSIGAYLFVDMAHVAG  209 (420)
T ss_dssp             CHHHHS-EEEEEEECTTCSCCHHHHHHHHHHH-----CCSEEEECCTTC--CSCCCHHHHHHHHHHTTCEEEEECTTTHH
T ss_pred             hcccce-eEEeccCCccCCcCHHHHHHHHHhc-----CCeEEEEecCcc--CCccCHHHHHHHHHHcCCEEEEECCcchh
Confidence            223221 4455677778899999999999874     278888887765  46889999999999999999999998766


Q ss_pred             ccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeC--chhhHhhhcCCcccccccccccCcccCCCCccccCC
Q psy12303        267 LLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQ--DGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCG  344 (480)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  344 (480)
                      ......... .   ...+|+++.|+||++++|.+ |+++.++  ..+.........++..                  .+
T Consensus       210 ~~~~~~~~~-~---~~~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~~~~~~~~~~~~------------------~~  266 (420)
T 3gbx_A          210 LIAAGVYPN-P---VPHAHVVTTTTHKTLAGPRG-GLILAKGGDEELYKKLNSAVFPSAQ------------------GG  266 (420)
T ss_dssp             HHHTTSSCC-S---TTTSSEEEEESSGGGCSCSC-EEEEESSCCHHHHHHHHHHHC----------------------CC
T ss_pred             ceecccCCc-c---cccCCEEEeecccCCCCCCc-eEEEEcCCcHHHHHHhhhhcCCCCC------------------CC
Confidence            553322111 1   22589999999999986664 7777655  1333332211000000                  00


Q ss_pred             CC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-CceeEEEEEeecCccCCCchhhHHHHhh
Q psy12303        345 RH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-PEMVNVSFWYLPTRVRNMPHEKRLNILG  422 (480)
Q Consensus       345 r~-~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~l~  422 (480)
                      .. ....++..++.....++++++.++..++++++.+.|.+  .|++++.+ .....+.+.+.+....            
T Consensus       267 ~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~~~~~~~~~~~~~------------  332 (420)
T 3gbx_A          267 PLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLN--RGYKVVSGGTENHLFLLDLVDKNLT------------  332 (420)
T ss_dssp             CCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSCSSSEEEEECGGGTCC------------
T ss_pred             cchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh--cCCeeccCCCCCeEEEEEcCCCCCC------------
Confidence            00 12223344444444567788899999999999999998  78998653 2333444433221111            


Q ss_pred             hhhHHHHHHHHhcccEEEee------eeeCCcccEEEEeccc---CCCCHHHHHHHHHHHHHhhcc
Q psy12303        423 EITPILKGRMMQAGTMMVGY------QPLNDLPNFFRNIISS---AAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       423 ~~~~~i~~~l~~~g~~~~~~------~~~~~~~~~~R~~~~~---~~~t~~di~~~~~~l~~~~~~  479 (480)
                        ...+.+.|.+.|+.+...      ....+ ...+|+++..   ...++++|+++++.|++++++
T Consensus       333 --~~~~~~~l~~~gi~v~~~~~~~~~~~~~~-~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~  395 (420)
T 3gbx_A          333 --GKEADAALGRANITVNKNSVPNDPKSPFV-TSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN  395 (420)
T ss_dssp             --HHHHHHHHHHTTEECEEECCTTCSSCTTT-CSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHCCcEeccccCCCCccccCC-CcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence              234566777778554431      11122 3569999432   225689999999999987653

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.91  E-value=1.8e-23  Score=207.62  Aligned_cols=335  Identities=13%  Similarity=0.026  Sum_probs=213.5

Q ss_pred             HHHHHHHcCc-CCcchhcChhhHHHHHHHHHHHHHHhCC--CC-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCcc
Q psy12303         90 GEWLIATANT-NMFTYEIAPVFILMETVVLEKMRQIIGW--QG-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAI  165 (480)
Q Consensus        90 ~~~l~~~~~~-~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~  165 (480)
                      .+.+...+.. ....|....+..++++.+.+++.+.+|.  ++ .++++|+|||+|+..++.++..              
T Consensus        42 ~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~--------------  107 (410)
T 3e2y_A           42 KEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVD--------------  107 (410)
T ss_dssp             HHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCC--------------
T ss_pred             HHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcC--------------
Confidence            3445544432 2234444445678888888999888886  34 6899999999999999988743              


Q ss_pred             CCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCC-----------CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCC
Q psy12303        166 KGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD-----------KRGRLIPSELERLVLERKAKGDIPFFVNCTSGT  234 (480)
Q Consensus       166 ~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~-----------~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~  234 (480)
                      ||+ .|+++.+.|.++...+...|.   +++.+|.+           .++.+|+++|+++++++      +++|++++++
T Consensus       108 ~gd-~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~  177 (410)
T 3e2y_A          108 PGD-EVIIMVPFYDCYEPMVRMAGA---VPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSK------TKAIILNTPH  177 (410)
T ss_dssp             TTC-EEEEEESCCTTHHHHHHHTTC---EEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTT------EEEEEEESSC
T ss_pred             CCC-EEEEeCCCchhhHHHHHHcCC---EEEEEeccccccccccccccCCcCCHHHHHhhcCCC------ceEEEEeCCC
Confidence            445 788888899999999999988   77888876           34678999999988654      8999999999


Q ss_pred             Cccccc---cChHHHHHHHHHcCcEEEeeccccccccccccccC-cccCCCCCCccceeCccccCC-CcccceEEEEeCc
Q psy12303        235 TVLGAF---DPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH-PRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQD  309 (480)
Q Consensus       235 ~~~G~~---~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~  309 (480)
                      |++|.+   .++++|.++|++||+++|+|++|+.+......... ..+....+.++++.|++|.++ .+.++|+++.++ 
T Consensus       178 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~-  256 (410)
T 3e2y_A          178 NPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPA-  256 (410)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCH-
T ss_pred             CCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEECH-
Confidence            999999   56999999999999999999999876543221100 011111134577779999998 446789887643 


Q ss_pred             hhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHH------hcHHHHHHHHHHHHHHHHHHHHHHh
Q psy12303        310 GLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA------KGDEGFEKQIDRLMELAEYMVKKIK  383 (480)
Q Consensus       310 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~------~g~~~~~~~~~~~~~l~~~l~~~l~  383 (480)
                      ..+...........               +   ........++...+..      ...+.++++.++..++++++.+.|+
T Consensus       257 ~~~~~~~~~~~~~~---------------~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  318 (410)
T 3e2y_A          257 HLIKHLQTVQQNSF---------------Y---TCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLN  318 (410)
T ss_dssp             HHHHHHHHHHHTTT---------------C---CCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhc---------------c---CCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44433221100000               0   0000112222223321      1245677888899999999999999


Q ss_pred             cCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCC------cccEEEEec
Q psy12303        384 SMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLND------LPNFFRNII  456 (480)
Q Consensus       384 ~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~------~~~~~R~~~  456 (480)
                      + . |+++. .|..+.+.+...+....+.+.... ...  ...++..++. +.|+.+.....+..      ..+++|+++
T Consensus       319 ~-~-g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~  392 (410)
T 3e2y_A          319 S-V-GLKPI-VPDGGYFIIADVSSLGADLSDMNS-DEP--YDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCF  392 (410)
T ss_dssp             T-T-TCEEE-BCSBSSEEEEECGGGCCCCTTCCS-SCC--HHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEEC
T ss_pred             H-C-CCeec-CCCccEEEEEEchhhhcccccccc-ccc--CHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEE
Confidence            9 5 88875 455555544322211111100000 000  0124445444 45644433222211      147999994


Q ss_pred             ccCCCCHHHHHHHHHHHHHh
Q psy12303        457 SSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       457 ~~~~~t~~di~~~~~~l~~~  476 (480)
                      .   .++++|++++++|+++
T Consensus       393 ~---~~~e~l~~~l~~l~~~  409 (410)
T 3e2y_A          393 I---KKDSTLDAAEEIFRAW  409 (410)
T ss_dssp             C---CCHHHHHHHHHHHHTC
T ss_pred             c---CCHHHHHHHHHHHHhc
Confidence            3   3999999999999864

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.91  E-value=1.8e-22  Score=201.24  Aligned_cols=301  Identities=12%  Similarity=0.077  Sum_probs=201.2

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++.+++++|.+  ++++|+|||+|+..++.++.               +|+ .|+++..+|+++..++...|.   +
T Consensus        55 ~~l~~~la~~~~~~--~v~~~~ggt~al~~~l~~l~---------------~gd-~Vlv~~~~~~~~~~~~~~~G~---~  113 (424)
T 2po3_A           55 REFEERVAGLAGVR--HAVATCNATAGLQLLAHAAG---------------LTG-EVIMPSMTFAATPHALRWIGL---T  113 (424)
T ss_dssp             HHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHHT---------------CCS-EEEEESSSCTHHHHHHHHTTC---E
T ss_pred             HHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC---------------CCC-EEEECCCccHHHHHHHHHcCC---E
Confidence            34566688888875  59999999999999998773               234 788999999999999999988   8


Q ss_pred             eEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccc
Q psy12303        195 CVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       195 v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~  273 (480)
                      ++.+++++ ++.+|+++|+++++++      +++|++++   ++|.+.++++|.++|+++|+++|+|++|+.+...... 
T Consensus       114 ~~~v~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~---~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~-  183 (424)
T 2po3_A          114 PVFADIDPDTGNLDPDQVAAAVTPR------TSAVVGVH---LWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGR-  183 (424)
T ss_dssp             EEEECBCTTTSSBCHHHHGGGCCTT------EEEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTE-
T ss_pred             EEEEecCCCcCCcCHHHHHHhhCcC------CcEEEEEC---CCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCe-
Confidence            88999886 6789999999988653      88888754   7999999999999999999999999999954432111 


Q ss_pred             cCcccCCCCCCccceeCcc--ccCCCcccceEEEEeCchhhHhhhcCCc-ccccccccccCcccCCCCccccCCCCCCch
Q psy12303        274 RHPRLTGIERADSVTWNPH--KLMGTLLQCSTIHFKQDGLLISCNQMSA-EYLFMQDKLYDVRYDTGDKVIQCGRHNDIF  350 (480)
Q Consensus       274 ~~~~~~~~~~~D~~~~s~h--K~~~~p~~~g~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l  350 (480)
                      .   +..  ..|+++.|+|  |++++ ..+|+++.+++++......... .+..        .+...  ......++..+
T Consensus       184 ~---~~~--~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~~~l~~~~~~~~~~--------~~~~~--~~g~~~~~~~~  247 (424)
T 2po3_A          184 P---AGS--LGDAEVFSFHATKAVNA-FEGGAVVTDDADLAARIRALHNFGFDL--------PGGSP--AGGTNAKMSEA  247 (424)
T ss_dssp             E---TTS--SSSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHHBTTTTC--------TTCCT--TCCCBCCCCHH
T ss_pred             e---ccc--ccCEEEEeCCCCCCccC-CCCeEEEeCCHHHHHHHHHHHhcCccc--------ccccc--ccCcCCCcCHH
Confidence            1   111  2477777776  98875 5677777664555443321110 0000        00000  01112234455


Q ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCce-----eEEEEEeecCccCCCchhhHHHHhhhhh
Q psy12303        351 KLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEM-----VNVSFWYLPTRVRNMPHEKRLNILGEIT  425 (480)
Q Consensus       351 ~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~-----~~v~f~~~~~~~~~~~~~~~~~~l~~~~  425 (480)
                      .++.++..  .+++++..++..++++++.+.|.+ +++++++.++..     ..+.+.+ +....+.         +  .
T Consensus       248 ~aa~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~i~~-~~~~~~~---------~--~  312 (424)
T 2po3_A          248 AAAMGLTS--LDAFPEVIDRNRRNHAAYREHLAD-LPGVLVADHDRHGLNNHQYVIVEI-DEATTGI---------H--R  312 (424)
T ss_dssp             HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCS-CTTEEECCGGGGSCCCCCCEEEEE-CHHHHSS---------C--H
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcc-CCCccccCCCCCCccccEEEEEEE-CCccchh---------h--H
Confidence            55555543  466788889999999999999999 889998653432     2233332 1100000         0  2


Q ss_pred             HHHHHHHHhcccEEEeeee-e-C------C-----cc-------cEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        426 PILKGRMMQAGTMMVGYQP-L-N------D-----LP-------NFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       426 ~~i~~~l~~~g~~~~~~~~-~-~------~-----~~-------~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .++.+.|.+.|+.+..... . .      +     .+       ..+|++ ++..+|++||++++++|+++++
T Consensus       313 ~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~-~~~~~t~e~i~~~~~~L~~~~~  384 (424)
T 2po3_A          313 DLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLP-TGTAIGDDDIRRVADLLRLCAT  384 (424)
T ss_dssp             HHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEEC-CSTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEee-CCCCCCHHHHHHHHHHHHHHHh
Confidence            3566777788854322100 0 0      0     01       127777 7889999999999999988764

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.91  E-value=3.2e-23  Score=207.19  Aligned_cols=314  Identities=11%  Similarity=0.005  Sum_probs=208.4

Q ss_pred             chhcChhhHHHHHHHHHHHHHHh-CCCCCC---eEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCc
Q psy12303        103 TYEIAPVFILMETVVLEKMRQII-GWQGGD---SILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH  178 (480)
Q Consensus       103 ~~~~~~~~~~~e~~~~~~la~~~-g~~~~~---~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h  178 (480)
                      .|....+..++++.+.+++.+.. +.++++   +++|+|||+|+..++.++.+              ||+ .|+++.++|
T Consensus        83 ~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~--------------~gd-~Vl~~~p~y  147 (430)
T 2x5f_A           83 PYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVN--------------QDD-TILLPEHNW  147 (430)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHCC--------------TTC-EEEEESSCC
T ss_pred             ccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHhC--------------CCC-EEEEcCCcC
Confidence            34333345666666666655442 666667   99999999999999988753              455 788888999


Q ss_pred             hhHHHHHHH-cCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHH-
Q psy12303        179 YSVRSCAAV-CGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQK-  252 (480)
Q Consensus       179 ~s~~~~~~~-~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~-  252 (480)
                      +++...+.. .|.   +++.+|.++ ++.+|+++|++++++.   +.++++|++++++||||.+.|   +++|.++|++ 
T Consensus       148 ~~~~~~~~~~~g~---~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~  221 (430)
T 2x5f_A          148 GNYKLVFNTRNGA---NLQTYPIFDKDGHYTTDSLVEALQSY---NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKAL  221 (430)
T ss_dssp             THHHHHHTTTTCC---EEEEECCBCTTSCBCSHHHHHHHHHC---CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHhcCC---eEEEEeccCccCCcCHHHHHHHHHhc---CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhh
Confidence            999998888 887   788888875 4689999999999762   223889999999999999988   8999999999 


Q ss_pred             ----cCcEEEeeccccccccccccccC-c-ccCCCCCC---ccceeCccccCCCc-ccceEEEE--eCchhhHhhhcCCc
Q psy12303        253 ----YNMWLHVDAAWGGGLLLSKKYRH-P-RLTGIERA---DSVTWNPHKLMGTL-LQCSTIHF--KQDGLLISCNQMSA  320 (480)
Q Consensus       253 ----~~~~l~vD~a~~~~~~~~~~~~~-~-~~~~~~~~---D~~~~s~hK~~~~p-~~~g~~~~--~~~~~~~~~~~~~~  320 (480)
                          ||+++++|++|+.+......... - .+.+....   ++++.++||+++.| .++|++++  +++...........
T Consensus       222 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~  301 (430)
T 2x5f_A          222 ANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVK  301 (430)
T ss_dssp             HHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHH
T ss_pred             hhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHh
Confidence                99999999999986543211100 0 01122234   57788999999744 56799987  24444443321110


Q ss_pred             ccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhc-----HHHHHHHHHHHHHHHHHHHHHHh----cCCCCeEE
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG-----DEGFEKQIDRLMELAEYMVKKIK----SMPDKFYL  391 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g-----~~~~~~~~~~~~~l~~~l~~~l~----~~~~g~~~  391 (480)
                      ......                 ......+..+++...+.     .+.+++..++..++++++.+.|+    +  .++++
T Consensus       302 ~~~~~~-----------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~--~g~~~  362 (430)
T 2x5f_A          302 GLIRSN-----------------ISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYH--SHWQA  362 (430)
T ss_dssp             HHHHTT-----------------TSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGT--TTEEE
T ss_pred             hhhhcc-----------------cCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCcee
Confidence            000000                 00012233333333322     22234477888889999999998    5  37887


Q ss_pred             ecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHH
Q psy12303        392 ILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLL  470 (480)
Q Consensus       392 ~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~  470 (480)
                      . ++..+.+++...+ ...              ..++.+.|.+ .|+. +.++   + .+++|+++ +. +++++|++++
T Consensus       363 ~-~~~~g~~~~~~~~-~~~--------------~~~~~~~l~~~~gi~-v~~g---~-~~~iRis~-~~-~~~e~i~~~~  419 (430)
T 2x5f_A          363 Y-DFNSGYFMAIKVH-DVD--------------PEALRKHLIDKYSIG-VIAL---N-ATDIRIAF-SC-VEKDDIPHVF  419 (430)
T ss_dssp             C-CCCBSSEEEEEES-SSC--------------HHHHHHHHHHHHCEE-CEEC---S-SSEEEEEG-GG-SCGGGHHHHH
T ss_pred             e-CCCceEEEEeCCC-CCC--------------HHHHHHHHHHhCCEE-EecC---C-CCeEEEEE-ec-CCHHHHHHHH
Confidence            5 5555554443333 211              2356777877 7744 4432   3 57999994 43 5899999999


Q ss_pred             HHHHHhhcc
Q psy12303        471 TEMDRLGHD  479 (480)
Q Consensus       471 ~~l~~~~~~  479 (480)
                      ++|++++++
T Consensus       420 ~~l~~~l~~  428 (430)
T 2x5f_A          420 DSIAKAIDD  428 (430)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988764

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.91  E-value=1.1e-23  Score=222.26  Aligned_cols=315  Identities=18%  Similarity=0.169  Sum_probs=209.1

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      -.+.++.+++++|.+. .+++++|+|+||..++.+...              ||+ .|+++..+|+|+..++...|+   
T Consensus       207 v~~~ee~la~l~G~d~-~i~~~~Gtt~a~~~~i~al~~--------------~GD-~Vlv~~~~h~s~~~~~~~~G~---  267 (755)
T 2vyc_A          207 FGESEKYAARVFGADR-SWSVVVGTSGSNRTIMQACMT--------------DND-VVVVDRNCHKSIEQGLMLTGA---  267 (755)
T ss_dssp             HHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHCC--------------TTC-EEEEESSCCHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHhCCCc-eEEECCcHHHHHHHHHHHhcC--------------CCC-EEEECCCchHHHHHHHHHcCC---
Confidence            3456788999999974 467788888999999888754              556 889999999999999999888   


Q ss_pred             CeEEeeCCCC-----CCC-----CHHHHHHHHHHH----HHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEe
Q psy12303        194 NCVEVPSDKR-----GRL-----IPSELERLVLER----KAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHV  259 (480)
Q Consensus       194 ~v~~v~~~~~-----~~~-----d~~~L~~~i~~~----~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~v  259 (480)
                      ++++++.+.+     +.+     |+++|++++++.    .+++.+|++|+++++ |++|.+.|+++|+++|++||+++|+
T Consensus       268 ~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~liv  346 (755)
T 2vyc_A          268 KPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHF  346 (755)
T ss_dssp             EEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEE
T ss_pred             EEEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEE
Confidence            7888887543     346     999999999863    124556678999998 6899999999999999999999999


Q ss_pred             ecccccccccccccc-CcccCCCCCCcc------ceeCccccCCCcccceEEEEeCc--hh-hHhhhcCCcccccccccc
Q psy12303        260 DAAWGGGLLLSKKYR-HPRLTGIERADS------VTWNPHKLMGTLLQCSTIHFKQD--GL-LISCNQMSAEYLFMQDKL  329 (480)
Q Consensus       260 D~a~~~~~~~~~~~~-~~~~~~~~~~D~------~~~s~hK~~~~p~~~g~~~~~~~--~~-~~~~~~~~~~~l~~~~~~  329 (480)
                      |+||+++..+.+..+ ...+.+ +.+|+      ++.|+||++++|.++|++++++.  .. ...... ....+ ..   
T Consensus       347 DeA~~~~~~~~~~~~~~~~~~g-~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~-~~~~~-~s---  420 (755)
T 2vyc_A          347 DEAWYGYARFNPIYADHYAMRG-EPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQ-AYMMH-AT---  420 (755)
T ss_dssp             ECTTCTTGGGCGGGTTSSSSCS-CCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHH-HHHHT-SC---
T ss_pred             ECcCchhcccCcccCCcchhcC-CcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHH-HHHHh-CC---
Confidence            999987644443321 101111 01676      99999999998888899988775  11 011000 00000 00   


Q ss_pred             cCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC---------eEEecCCce---
Q psy12303        330 YDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDK---------FYLILEPEM---  397 (480)
Q Consensus       330 ~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g---------~~~~~~~~~---  397 (480)
                             ++.++     ....++-.+++.+..++..+..++..++++++++.|++ +++         +++++++..   
T Consensus       421 -------~sp~~-----~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~  487 (755)
T 2vyc_A          421 -------TSPLY-----AICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMAR-LYKEFTADGSWFFKPWNKEVVTDP  487 (755)
T ss_dssp             -------SSCCH-----HHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTTCCCCEESSCSEEECT
T ss_pred             -------CCHHH-----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-ccccccccccceeeccCchhcccc
Confidence                   00000     11223334455554454577889999999999999998 778         887764321   


Q ss_pred             ----------------------------------------------eEEEEEeecCccCCCchhhHHHHhhhhhHHHHHH
Q psy12303        398 ----------------------------------------------VNVSFWYLPTRVRNMPHEKRLNILGEITPILKGR  431 (480)
Q Consensus       398 ----------------------------------------------~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~  431 (480)
                                                                    ..+.|...+....+.-. +  ..+.  ...+.+.
T Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~-~--~g~~--~~~l~~~  562 (755)
T 2vyc_A          488 QTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELE-E--TGVP--AALVTAW  562 (755)
T ss_dssp             TTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBC-S--SCCC--HHHHHHH
T ss_pred             ccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCcc-c--cCCc--HHHHHHH
Confidence                                                          11222111101111000 0  0000  1356677


Q ss_pred             HHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        432 MMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       432 l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      |.+.|+ .+...   + .+.+|++ +++.+|++++++++++|.++.+
T Consensus       563 L~~~gI-~~e~~---~-~~~v~~~-~~~g~t~~~~~~l~~al~~~~~  603 (755)
T 2vyc_A          563 LGRHGI-VPTRT---T-DFQIMFL-FSMGVTRGKWGTLVNTLCSFKR  603 (755)
T ss_dssp             HHTTTC-CCSEE---C-SSEEEEE-CCTTCCTTTTHHHHHHHHHHHH
T ss_pred             HHHCCC-EEeec---C-CCeEEEE-ECCCCCHHHHHHHHHHHHHHHH
Confidence            777663 22221   3 5789999 8899999999999999998754

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.91  E-value=1.5e-22  Score=200.22  Aligned_cols=216  Identities=12%  Similarity=0.073  Sum_probs=159.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHH----HHHH
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS----CAAV  187 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~----~~~~  187 (480)
                      ...+++++.+++++|.+  ++++++||++|+..++.++.+              ||+ .|+++.+.|+++..    .+..
T Consensus        62 ~~~~~l~~~ia~~~g~~--~~i~~~~g~~ai~~~~~~l~~--------------~gd-~Vl~~~~~y~~~~~~~~~~~~~  124 (404)
T 1e5e_A           62 PTVSNLEGKIAFLEKTE--ACVATSSGMGAIAATVLTILK--------------AGD-HLISDECLYGCTHALFEHALTK  124 (404)
T ss_dssp             HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHCC--------------TTC-EEEEESCCCHHHHHHHHTHHHH
T ss_pred             hHHHHHHHHHHHHhCCC--cEEEeCChHHHHHHHHHHHhC--------------CCC-EEEEeCCCchhHHHHHHHHHHH
Confidence            33445677788889986  588888999999999887643              455 78888999999888    6777


Q ss_pred             cCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHH-cCcEEEeecccccc
Q psy12303        188 CGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQK-YNMWLHVDAAWGGG  266 (480)
Q Consensus       188 ~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~-~~~~l~vD~a~~~~  266 (480)
                      .|.   +++.+|.+     |+++|+++++++      +++|++++++|++|.+.|+++|.++|++ +|+++++|++|+.+
T Consensus       125 ~g~---~~~~v~~~-----d~~~l~~~i~~~------t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~  190 (404)
T 1e5e_A          125 FGI---QVDFINTA-----IPGEVKKHMKPN------TKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSP  190 (404)
T ss_dssp             TTC---EEEEECTT-----STTHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCT
T ss_pred             cCC---EEEEECCC-----CHHHHHHhcCCC------CcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchh
Confidence            787   78888876     788999988754      8999999999999999999999999999 99999999999987


Q ss_pred             ccccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhH-hhhcCCcccccccccccCcccCCCCccccC
Q psy12303        267 LLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLI-SCNQMSAEYLFMQDKLYDVRYDTGDKVIQC  343 (480)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  343 (480)
                      ....+. ..       ++|+++.|+||++++|.+  +|++++++ +.+. ........+.                    
T Consensus       191 ~~~~~~-~~-------~~di~~~S~sK~~~~~g~ri~G~~~~~~-~~~~~~l~~~~~~~~--------------------  241 (404)
T 1e5e_A          191 MITNPV-DF-------GVDVVVHSATKYINGHTDVVAGLICGKA-DLLQQIRMVGIKDIT--------------------  241 (404)
T ss_dssp             TTCCGG-GG-------TCSEEEEETTTTTTCSSCCCCEEEEECH-HHHHHHHHTCCCCCC--------------------
T ss_pred             hhCCcc-cc-------CCEEEEEcCccccCCCCCCeEEEEEECH-HHHHHHHHHHHHhCC--------------------
Confidence            653221 22       789999999999998765  58887654 3443 3322111110                    


Q ss_pred             CCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeE
Q psy12303        344 GRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFY  390 (480)
Q Consensus       344 ~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~  390 (480)
                      +.....+..|+++..+.  .+..+.++..++++.+.+.+++ .+.+.
T Consensus       242 g~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~l~~~l~~-~~~v~  285 (404)
T 1e5e_A          242 GSVISPHDAWLITRGLS--TLNIRMKAESENAMKVAEYLKS-HPAVE  285 (404)
T ss_dssp             CCCCCHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHHT-CTTEE
T ss_pred             CCCCCHHHHHHHHHhHh--HHHHHHHHHHHHHHHHHHHHHh-CCCee
Confidence            01123455666665542  3455667777888888888888 65553

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.91  E-value=1e-22  Score=206.64  Aligned_cols=334  Identities=11%  Similarity=0.012  Sum_probs=213.7

Q ss_pred             CcchhcChhhHHHHHHHHHHHHHHhC-C--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCC
Q psy12303        101 MFTYEIAPVFILMETVVLEKMRQIIG-W--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQC  177 (480)
Q Consensus       101 ~~~~~~~~~~~~~e~~~~~~la~~~g-~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~  177 (480)
                      ...|..+.+...+.+++.+++.+..| .  +++++++|+|+++|+..++.++.+.        |..  + +..|+++.+.
T Consensus       122 ~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~--------gd~--~-~d~Vlv~~p~  190 (498)
T 3ihj_A          122 LGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSG--------GGK--S-RTGVMIPIPQ  190 (498)
T ss_dssp             ------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCC--------CGG--G-SEEEEEEESC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCC--------CCC--C-CCEEEEeCCC
Confidence            35566677778899999999998885 4  5678999999999999998877541        110  1 2389999999


Q ss_pred             chhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHH
Q psy12303        178 HYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQK  252 (480)
Q Consensus       178 h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~  252 (480)
                      |+++..++..+|.   +++.+++++  ++.+|+++|++++++... +.++++|++++++||||.+.+   +++|+++|++
T Consensus       191 y~~~~~~~~~~g~---~~v~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~  266 (498)
T 3ihj_A          191 YPLYSAVISELDA---IQVNYYLDEENCWALNVNELRRAVQEAKD-HCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWE  266 (498)
T ss_dssp             CTHHHHHHHHTTC---EEEEEECBGGGTTBCCHHHHHHHHHHHTT-TSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHcCC---EEEEeeccccccCCCCHHHHHHHHHhhhc-cCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHH
Confidence            9999999999988   788888875  468999999999987532 124899999999999999955   6779999999


Q ss_pred             cCcEEEeeccccccccccc-cccC--cccCCC-----CCCc-cceeCccccCC--CcccceEEEE--eCchhhHhhhcCC
Q psy12303        253 YNMWLHVDAAWGGGLLLSK-KYRH--PRLTGI-----ERAD-SVTWNPHKLMG--TLLQCSTIHF--KQDGLLISCNQMS  319 (480)
Q Consensus       253 ~~~~l~vD~a~~~~~~~~~-~~~~--~~~~~~-----~~~D-~~~~s~hK~~~--~p~~~g~~~~--~~~~~~~~~~~~~  319 (480)
                      ||+++++|++|+.+.+... ....  .....+     .... +++.|++|.+.  .+..+|++++  .++.+........
T Consensus       267 ~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~  346 (498)
T 3ihj_A          267 EKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLL  346 (498)
T ss_dssp             HTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHH
T ss_pred             cCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHH
Confidence            9999999999988765321 1100  000000     0122 34568999994  4567888875  4555544332111


Q ss_pred             cccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhc------------HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12303        320 AEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG------------DEGFEKQIDRLMELAEYMVKKIKSMPD  387 (480)
Q Consensus       320 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g------------~~~~~~~~~~~~~l~~~l~~~l~~~~~  387 (480)
                      ..+.                   +   ...+..++....+.            .+...++.++..++++++.+.|++ +|
T Consensus       347 ~~~~-------------------~---~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~~  403 (498)
T 3ihj_A          347 SVRL-------------------C---PPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQ-VP  403 (498)
T ss_dssp             HHSC-------------------C---CCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-ST
T ss_pred             hccC-------------------C---CCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence            1110                   0   11222222222221            123456677888999999999999 89


Q ss_pred             CeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHH--HHHHHHhcccEEEeeeeeC--CcccEEEEecccCCCCH
Q psy12303        388 KFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPI--LKGRMMQAGTMMVGYQPLN--DLPNFFRNIISSAAVTE  463 (480)
Q Consensus       388 g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~--i~~~l~~~g~~~~~~~~~~--~~~~~~R~~~~~~~~t~  463 (480)
                      |+++. +|+.++++|...+....   ..+..+....-..+  +.+.|.+.|++++....+.  ....++|+++   ..++
T Consensus       404 g~~~~-~p~gg~~~~~~l~~p~~---~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~---~~~~  476 (498)
T 3ihj_A          404 GIHCN-PLQGAMYAFPRIFIPAK---AVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTI---LPPV  476 (498)
T ss_dssp             TEECC-CCCBSSEECCEECCCHH---HHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEEC---CSCH
T ss_pred             CcEec-CCCeEEEEEEeccCchh---hhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEe---CCCH
Confidence            99874 67777776632211000   00000000000122  2445556776555432221  1146999995   2689


Q ss_pred             HHHHHHHHHHHHhhcc
Q psy12303        464 GDIDFLLTEMDRLGHD  479 (480)
Q Consensus       464 ~di~~~~~~l~~~~~~  479 (480)
                      ++++.++++|+++.++
T Consensus       477 e~l~~~i~~L~~~~~~  492 (498)
T 3ihj_A          477 EKLKTVLQKVKDFHIN  492 (498)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999887653

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.91  E-value=2.1e-23  Score=201.06  Aligned_cols=280  Identities=13%  Similarity=0.073  Sum_probs=186.4

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHH----HcCCC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAA----VCGLG  191 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~----~~g~~  191 (480)
                      ++++.+++++|.+  +.+++++||+|+..++.++..              ||+ .|+++..+|+++...+.    ..|. 
T Consensus         2 ~l~~~la~~~g~~--~~i~~~sG~~a~~~~~~~~~~--------------~g~-~v~~~~~~~~~~~~~~~~~~~~~g~-   63 (331)
T 1pff_A            2 ALEGKIAKLEHAE--ACAATASGMGAIAASVWTFLK--------------AGD-HLISDDCLYGCTHALFEHQLRKFGV-   63 (331)
T ss_dssp             HHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHCC--------------TTC-EEEEESCCCHHHHHHHHTHHHHTTC-
T ss_pred             hHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcC--------------CCC-EEEEcCCCcchHHHHHHHHHHhcCC-
Confidence            4567799999987  466666779999999887632              445 78888899999877753    3566 


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHH-cCcEEEeecccccccccc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQK-YNMWLHVDAAWGGGLLLS  270 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~-~~~~l~vD~a~~~~~~~~  270 (480)
                        +++.++.     .|+++|+++++++      +++|++++++|++|.+.|+++|.++|++ +|+++|+|++|+.+....
T Consensus        64 --~~~~~~~-----~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~  130 (331)
T 1pff_A           64 --EVDFIDM-----AVPGNIEKHLKPN------TRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTN  130 (331)
T ss_dssp             --EEEEECT-----TSTTHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCC
T ss_pred             --EEEEeCC-----CCHHHHHHhhcCC------CeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCC
Confidence              7777876     3788999888754      8999999999999999999999999999 999999999999876543


Q ss_pred             ccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCC
Q psy12303        271 KKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHND  348 (480)
Q Consensus       271 ~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~  348 (480)
                      +. ..       ++|+++.|+||++++|.+  +|++++++++...........|.                    +....
T Consensus       131 ~~-~~-------~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~--------------------~~~~~  182 (331)
T 1pff_A          131 PL-DL-------GVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDIT--------------------GAIIS  182 (331)
T ss_dssp             GG-GG-------TCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCC--------------------CCCCC
T ss_pred             hh-hc-------CCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhc--------------------CCCCC
Confidence            32 23       789999999999998766  67887665355444332221100                    00122


Q ss_pred             chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC--------------CeEEecC---CceeEEEEEeecCccCC
Q psy12303        349 IFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD--------------KFYLILE---PEMVNVSFWYLPTRVRN  411 (480)
Q Consensus       349 ~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~--------------g~~~~~~---~~~~~v~f~~~~~~~~~  411 (480)
                      .+..+..+..  .+.+..+.++..++.+.+.+.+++ .+              +++++.+   ...++++|.+.  .   
T Consensus       183 ~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~---  254 (331)
T 1pff_A          183 PHDAWLITRG--TLTLDMRVKRAAENAQKVAEFLHE-HKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD--G---  254 (331)
T ss_dssp             HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-CTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS--S---
T ss_pred             HHHHHHHHcC--cchHHHHHHHHHHHHHHHHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC--C---
Confidence            3344443333  223344444555556666666554 32              3332211   13455666432  1   


Q ss_pred             CchhhHHHHhhhhhHHHHHHHHhcccEEEeee--e----------------------eCCc-ccEEEEecccCCCCHHHH
Q psy12303        412 MPHEKRLNILGEITPILKGRMMQAGTMMVGYQ--P----------------------LNDL-PNFFRNIISSAAVTEGDI  466 (480)
Q Consensus       412 ~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~--~----------------------~~~~-~~~~R~~~~~~~~t~~di  466 (480)
                                   ..++.+.+.+.|++.....  .                      ..+. .+++|++ ++..+|+++|
T Consensus       255 -------------~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis-~~~~~t~~~i  320 (331)
T 1pff_A          255 -------------LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLS-VGCENVQDII  320 (331)
T ss_dssp             -------------HHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEE-CCSSCHHHHH
T ss_pred             -------------HHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEE-EecCCHHHHH
Confidence                         1245566667775432210  0                      0111 4799999 7788999999


Q ss_pred             HHHHHHHHHh
Q psy12303        467 DFLLTEMDRL  476 (480)
Q Consensus       467 ~~~~~~l~~~  476 (480)
                      +.+++.|+++
T Consensus       321 ~~l~~~l~~~  330 (331)
T 1pff_A          321 DDLKQALDLV  330 (331)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHHh
Confidence            9999999865

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.91  E-value=2.3e-22  Score=198.44  Aligned_cols=297  Identities=13%  Similarity=0.070  Sum_probs=190.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG  191 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~  191 (480)
                      ....++++++++++|.  ..+++++|||+|+..++.+++...   ....|..  +|+..|++...+|++....+..++..
T Consensus        78 ~~~~~l~~~la~~~g~--~~v~~~~~gt~a~~~al~~~~~~~---~~~~~~~--~~~~~vi~~~~~~~~~~~~~~~~~~~  150 (392)
T 3ruy_A           78 DQLGPWYEKVAKLTNK--EMVLPMNTGAEAVETAIKTARRWA---YDVKKVE--ANRAEIIVCEDNFHGRTMGAVSMSSN  150 (392)
T ss_dssp             TTHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHHHH---HHTSCCC--TTCCEEEEETTCCCCSSHHHHHTCSC
T ss_pred             HHHHHHHHHHHHhcCC--CEEEEeCcHHHHHHHHHHHHHHhh---hhccCCC--CCCcEEEEEcCCcCCCCHhhhhccCC
Confidence            4455677889999983  469999999999999999876520   0011211  22336777666665544444333211


Q ss_pred             ----------CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEE
Q psy12303        192 ----------TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWL  257 (480)
Q Consensus       192 ----------~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l  257 (480)
                                ...+..++.+     |+++|+++++++      +++|++++++|++|.+.|    +++|.++|++||+++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~l  219 (392)
T 3ruy_A          151 EEYKRGFGPMLPGIIVIPYG-----DLEALKAAITPN------TAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLF  219 (392)
T ss_dssp             TTTTTTCCSCCSSEEEECTT-----CHHHHHHHCCTT------EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEE
T ss_pred             hhhccccCCCCCCCeeeCcc-----cHHHHHHHhccC------eEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence                      1124445443     899999999744      999999999999999998    999999999999999


Q ss_pred             EeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccCC
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDT  336 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  336 (480)
                      |+|++|+++......... ...++ ..|++++|  |.++++ .+.|+++.++ +........    ...           
T Consensus       220 i~De~~~~~~~~g~~~~~-~~~~~-~~d~~~~S--K~l~gG~~~~G~~~~~~-~~~~~~~~~----~~~-----------  279 (392)
T 3ruy_A          220 VADEIQTGLGRTGKVFAC-DWDNV-TPDMYILG--KALGGGVFPISCAAANR-DILGVFEPG----SHG-----------  279 (392)
T ss_dssp             EEECTTTTTTTTSSSSGG-GGGTC-CCSEEEEC--GGGGTTTSCCEEEEECH-HHHTTCCTT----SSC-----------
T ss_pred             EEeechhCCCccccchhh-hccCC-CCCEEEEc--hhhhCChhhhEEEEECH-HHHhhhccC----CcC-----------
Confidence            999999754332211111 22233 56887764  988764 5688888643 433322110    000           


Q ss_pred             CCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC--CCeEEecCCceeEEEEEeecCccCCCch
Q psy12303        337 GDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP--DKFYLILEPEMVNVSFWYLPTRVRNMPH  414 (480)
Q Consensus       337 ~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~--~g~~~~~~~~~~~v~f~~~~~~~~~~~~  414 (480)
                      ..+      ....+...++...+.....++..++..++++++.+.|++ .  +.+... ++....+.+.+ +.  .    
T Consensus       280 ~~~------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~-~~~g~~~~~~~-~~--~----  344 (392)
T 3ruy_A          280 STF------GGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKE-IDNPMITEV-RGKGLFIGIEL-NE--P----  344 (392)
T ss_dssp             CSS------TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTT-CCCTTEEEE-EEETTEEEEEE-SS--C----
T ss_pred             CCC------CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-hcCCCceEE-EeeeeEEEEEE-cc--h----
Confidence            000      122333333333322111266788889999999999998 5  345443 34445555543 22  1    


Q ss_pred             hhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        415 EKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       415 ~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                                ..++.+.|.+.|+ .+.+.   + .+++|++ ++..+|++|+++++++|++++
T Consensus       345 ----------~~~l~~~l~~~gi-~v~~~---~-~~~iRi~-~~~~~~~~~i~~~~~~l~~~l  391 (392)
T 3ruy_A          345 ----------ARPYCEQLKAAGL-LCKET---H-ENVIRIA-PPLVISEEDLEWAFQKIKAVL  391 (392)
T ss_dssp             ----------SHHHHHHHHTTTE-ECCCB---T-TTEEEEC-CCTTCCHHHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHCCc-EEecC---C-CCEEEEE-CCCCCCHHHHHHHHHHHHHHh
Confidence                      2456778888884 34331   2 5799999 888999999999999999875

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.91  E-value=3.3e-22  Score=197.16  Aligned_cols=309  Identities=16%  Similarity=0.081  Sum_probs=196.8

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++++.+++++|.+  .++++++||+|+..++.+++...     ..+.  .||+ .|+++..+|+++..++...|.   +
T Consensus        37 ~~l~~~la~~~~~~--~~i~~~sGt~a~~~al~~~~~~~-----~~~~--~~g~-~Vi~~~~~~~~~~~~~~~~g~---~  103 (390)
T 3b8x_A           37 KQYETQFAKTFGSK--YAVMVSSGSTANLLMIAALFFTK-----KPRL--KKGD-EIIVPAVSWSTTYYPLQQYGL---R  103 (390)
T ss_dssp             HHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTSSS-----SCSC--CTTC-EEEEESSSCHHHHHHHHHTTC---E
T ss_pred             HHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHHhhh-----hcCC--CCcC-EEEECCCCcHHHHHHHHHcCC---E
Confidence            34556688888887  48999999999999998773110     0011  1445 788999999999999999888   8


Q ss_pred             eEEeeCCCC-CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccc
Q psy12303        195 CVEVPSDKR-GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       195 v~~v~~~~~-~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~  273 (480)
                      ++.++++++ +.+|+++|+++++++      +++|++++   ++|...|+++|.++|++||+++|+|++|+.+... +..
T Consensus       104 ~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~~  173 (390)
T 3b8x_A          104 VKFVDIDINTLNIDIESLKEAVTDS------TKAILTVN---LLGNPNNFDEINKIIGGRDIILLEDNCESMGATF-NNK  173 (390)
T ss_dssp             EEEECBCTTTCSBCHHHHHHHCCTT------EEEEEEEC---GGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEE-TTE
T ss_pred             EEEEecCccccCcCHHHHHHHhCcC------CeEEEEEC---CccChhhHHHHHHHHHHcCCEEEEECcCcccCEE-CCc
Confidence            889999875 899999999998764      88888863   5788999999999999999999999999976554 211


Q ss_pred             cCcccCCCCCCccceeC--ccccCCCcccceEEEEeCchhhHhhhcCCc-ccccc-----------cccccCcccCCCCc
Q psy12303        274 RHPRLTGIERADSVTWN--PHKLMGTLLQCSTIHFKQDGLLISCNQMSA-EYLFM-----------QDKLYDVRYDTGDK  339 (480)
Q Consensus       274 ~~~~~~~~~~~D~~~~s--~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~-~~l~~-----------~~~~~~~~~~~~~~  339 (480)
                      ..    +. ..|+.+++  +.|.+++|.| |++++++..+......... .+...           ....+...+.   +
T Consensus       174 ~~----g~-~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~  244 (390)
T 3b8x_A          174 CA----GT-FGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFK---F  244 (390)
T ss_dssp             ET----TS-SSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSC---B
T ss_pred             cc----cc-ccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccc---e
Confidence            11    11 23444433  3444554444 7777766444332211110 10000           0000000000   0


Q ss_pred             cccCCCC--CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC-ceeE--EEEEeecCccCCCch
Q psy12303        340 VIQCGRH--NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP-EMVN--VSFWYLPTRVRNMPH  414 (480)
Q Consensus       340 ~~~~~r~--~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~-~~~~--v~f~~~~~~~~~~~~  414 (480)
                      . ..|.+  ...+.+++++..  .+.+++..++..++++++.+.|++ ++++++..++ ..+.  +.+.+.+.  .+.+ 
T Consensus       245 ~-~~g~~~~~~~~~aa~~l~~--l~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~-  317 (390)
T 3b8x_A          245 V-LPGYNVRPLEMSGAIGIEQ--LKKLPRFISVRRKNAEYFLDKFKD-HPYLDVQQETGESSWFGFSFIIKKD--SGVI-  317 (390)
T ss_dssp             C-SCCCBCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTT-CSSEEECCCCSBCCCCEEEEEECTT--SCCC-
T ss_pred             e-ccccccCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcC-CCCcccCCCCCCcccEEEEEEecCc--Cccc-
Confidence            0 01222  345666666655  467788899999999999999999 8899986433 2333  22232211  0111 


Q ss_pred             hhHHHHhhhhhHHHHHHHHhcccEEEee--e------ee-C-------C--------cccEEEEecccCCCCHHHHHHHH
Q psy12303        415 EKRLNILGEITPILKGRMMQAGTMMVGY--Q------PL-N-------D--------LPNFFRNIISSAAVTEGDIDFLL  470 (480)
Q Consensus       415 ~~~~~~l~~~~~~i~~~l~~~g~~~~~~--~------~~-~-------~--------~~~~~R~~~~~~~~t~~di~~~~  470 (480)
                                ..++.+.|.+.|+.+...  .      +. .       .        ....+|++ +++.+|++||++++
T Consensus       318 ----------~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~-~~~~~t~~di~~i~  386 (390)
T 3b8x_A          318 ----------RKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVG-NHQIELFDEIDYLR  386 (390)
T ss_dssp             ----------HHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEE-CCSSCCHHHHHHHH
T ss_pred             ----------HHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEee-CCCCCCHHHHHHHH
Confidence                      235667777777543220  0      00 0       0        01479999 89999999999999


Q ss_pred             HHH
Q psy12303        471 TEM  473 (480)
Q Consensus       471 ~~l  473 (480)
                      +.|
T Consensus       387 ~~l  389 (390)
T 3b8x_A          387 EVL  389 (390)
T ss_dssp             HHT
T ss_pred             Hhh
Confidence            886

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.91  E-value=9.5e-23  Score=201.41  Aligned_cols=294  Identities=13%  Similarity=0.058  Sum_probs=189.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      .....++++++++++|.++.++++|+|||+|+..++.+++...            +|+.+|+.+...|.+...++...|.
T Consensus        86 ~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~------------~~~~vi~~~~~y~~~~~~~~~~~g~  153 (395)
T 1vef_A           86 TPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHT------------GRKKFVAAMRGFSGRTMGSLSVTWE  153 (395)
T ss_dssp             CHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHH------------SCCEEEEETTCCCCSSHHHHHTCCC
T ss_pred             CHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHh------------CCCeEEEEcCCcCCCchhhhhhcCC
Confidence            3556678888999998766789999999999999998875210            3353555555556666667776665


Q ss_pred             CC---------CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEE
Q psy12303        191 GT---------DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWL  257 (480)
Q Consensus       191 ~~---------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l  257 (480)
                      ..         ..+..++.     .|+++|+++++++      +++|+++..++++|.+.|    +++|.++|++||+++
T Consensus       154 ~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~~------~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~l  222 (395)
T 1vef_A          154 PKYREPFLPLVEPVEFIPY-----NDVEALKRAVDEE------TAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALL  222 (395)
T ss_dssp             HHHHGGGCSCSSCEEEECT-----TCHHHHHHHCCTT------EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEE
T ss_pred             cccccccCCCCCCeeEeCC-----CcHHHHHHHhccC------EEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEE
Confidence            20         01334443     4899999988753      889999888889999877    999999999999999


Q ss_pred             EeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCC
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  337 (480)
                      |+|++|+++......... ...++ .+|++  +++|++++|.++|+++++++ +......   ...            ..
T Consensus       223 i~Dea~~~~~~~g~~~~~-~~~~~-~~d~~--s~sK~~~~g~~~G~~~~~~~-~~~~l~~---~~~------------~~  282 (395)
T 1vef_A          223 ILDEIQTGMGRTGKRFAF-EHFGI-VPDIL--TLAKALGGGVPLGVAVMREE-VARSMPK---GGH------------GT  282 (395)
T ss_dssp             EEECTTTTTTTTSSSSTH-HHHTC-CCSEE--EECGGGGTTSSCEEEEEEHH-HHHTSCT---TSS------------CC
T ss_pred             EEEecccCCccCCchhHh-hhcCC-CCCEE--EEcccccCCCceEEEEehHH-HHhhhcc---CCc------------CC
Confidence            999999953221111111 11222 46776  46999998888999998754 4332211   000            00


Q ss_pred             CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC--eEEecCCceeEEEEEeecCccCCCchh
Q psy12303        338 DKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDK--FYLILEPEMVNVSFWYLPTRVRNMPHE  415 (480)
Q Consensus       338 ~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g--~~~~~~~~~~~v~f~~~~~~~~~~~~~  415 (480)
                      .+   ........++..+++.+..   .+..++..++++++.+.|++ ...  +... ++....+.+.+ +..       
T Consensus       283 ~~---~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~-~~~g~~~~~~~-~~~-------  346 (395)
T 1vef_A          283 TF---GGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRA-IPSPKIREV-RGMGLMVGLEL-KEK-------  346 (395)
T ss_dssp             SS---TTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHT-SCCTTEEEE-EEETTEEEEEE-SSC-------
T ss_pred             Cc---CCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHH-hhcCceEEE-EEEEEEEEEEE-cCh-------
Confidence            00   0000122233333443322   35678888899999999988 532  2211 22333444433 211       


Q ss_pred             hHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        416 KRLNILGEITPILKGRMM-QAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       416 ~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                               ..++.+.|. +.|+. +.+.   + .+++|++ ++..++++++++++++|+++++
T Consensus       347 ---------~~~l~~~l~~~~gi~-v~~~---~-~~~iRi~-~~~~~~~~~i~~~~~~l~~~l~  395 (395)
T 1vef_A          347 ---------AAPYIARLEKEHRVL-ALQA---G-PTVIRFL-PPLVIEKEDLERVVEAVRAVLA  395 (395)
T ss_dssp             ---------SHHHHHHHHHHHCEE-CEES---S-TTEEEEC-CCTTCCHHHHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHCCeE-EecC---C-CCEEEEe-CCCCCCHHHHHHHHHHHHHHhC
Confidence                     135667777 77744 3331   3 5799999 7788999999999999998753

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.91  E-value=4.9e-24  Score=207.89  Aligned_cols=307  Identities=15%  Similarity=0.062  Sum_probs=200.3

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCC-CCCeEECCCh-hHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH
Q psy12303        107 APVFILMETVVLEKMRQIIGWQ-GGDSILAPGG-SISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC  184 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~-~~~~~~t~gg-t~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~  184 (480)
                      ++...++.+++++++++++|.+ ++++++|+|+ |+|+..++......        |   .+|+ +|+++..+|++.. .
T Consensus        43 ~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~--------~---~~g~-~vi~~~~~~~~~~-~  109 (360)
T 1w23_A           43 SQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTK--------G---TIGN-YVLTGSWSEKALK-E  109 (360)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCT--------T---CEEE-EEECSHHHHHHHH-H
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCC--------C---Cccc-EEEecchhHHHHH-H
Confidence            5666677888999999999996 3579999998 99999888776431        1   1223 6778777777643 3


Q ss_pred             HHHcCCCCCCeEEeeCCC-CCCCCHHHHHH-HHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecc
Q psy12303        185 AAVCGLGTDNCVEVPSDK-RGRLIPSELER-LVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAA  262 (480)
Q Consensus       185 ~~~~g~~~~~v~~v~~~~-~~~~d~~~L~~-~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a  262 (480)
                      +...|    +++.+|.++ ++.+|+++|++ +++++      |++|++++++|++|.+.|  +   |+++||+++++|++
T Consensus       110 ~~~~g----~~~~v~~~~~~~~~d~~~l~~~~i~~~------~k~v~~~~~~nptG~~~~--~---i~~~~~~~li~D~a  174 (360)
T 1w23_A          110 AKLLG----ETHIAASTKANSYQSIPDFSEFQLNEN------DAYLHITSNNTIYGTQYQ--N---FPEINHAPLIADMS  174 (360)
T ss_dssp             HHTTS----EEEEEEECGGGTSCSCCCGGGCCCCTT------EEEEEEESEETTTTEECS--S---CCCCCSSCEEEECT
T ss_pred             HHHhC----CeEEeecccccCcCCccchHhhccCCC------CCEEEEeCCCCCcceecc--c---ccccCCceEEEech
Confidence            44443    577888875 66789999988 77543      899999999999999865  2   33389999999999


Q ss_pred             ccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcccc
Q psy12303        263 WGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQ  342 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  342 (480)
                      |+.+..+.+.      .   ..|+++.++||+++ |.|+|++++++. .+.......+.++ ............      
T Consensus       175 ~~~~~~~~~~------~---~~di~~~s~sK~~~-~~G~G~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~------  236 (360)
T 1w23_A          175 SDILSRPLKV------N---QFGMIYAGAQKNLG-PSGVTVVIVKKD-LLNTKVEQVPTML-QYATHIKSDSLY------  236 (360)
T ss_dssp             TTTTSSCCCG------G---GCSEEEEETTTTTS-CTTCEEEEEEHH-HHCSCCTTCCGGG-CHHHHHHTTTCS------
T ss_pred             hhcCCCCcCc------c---cCCEEEEEcccccC-CCCcEEEEEcHH-HHhhcccCCcchh-hhhhhhhccCCC------
Confidence            9987654321      1   23899999999987 668999998654 3332221111111 000000000000      


Q ss_pred             CCCC-CCchHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCCe-EEecCC--cee-EEEEEeecCccCCCchhh
Q psy12303        343 CGRH-NDIFKLWLQWRAKGDE-GFEKQIDRLMELAEYMVKKIKSMPDKF-YLILEP--EMV-NVSFWYLPTRVRNMPHEK  416 (480)
Q Consensus       343 ~~r~-~~~l~~~~~l~~~g~~-~~~~~~~~~~~l~~~l~~~l~~~~~g~-~~~~~~--~~~-~v~f~~~~~~~~~~~~~~  416 (480)
                      .+.. ....++..+++.+... +++++.++..++++++.+.|++ ++++ ....+|  ..+ .+++.+ +..        
T Consensus       237 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~--------  306 (360)
T 1w23_A          237 NTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDE-SNGFYVGHAEKGSRSLMNVTFNL-RNE--------  306 (360)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT-TTTSSEESSCGGGBCSSEEEEEC-SSH--------
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-ccCcccccCCchhccCcEEEEEc-CCC--------
Confidence            0101 1223344445544333 6788899999999999999999 7765 553223  234 444432 211        


Q ss_pred             HHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        417 RLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       417 ~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                          .  ...++.+.|.+.|+.+ .+.. .. .+++|++ ++..++++++++++++|++++++
T Consensus       307 ----~--~~~~~~~~l~~~gi~~-~~~~-~~-~~~iRis-~~~~~~~~~i~~~~~~l~~~~~~  359 (360)
T 1w23_A          307 ----E--LNQQFLAKAKEQGFVG-LNGH-RS-VGGCRAS-IYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             ----H--HHHHHHHHHHHTTEES-CBCC-TT-TCSEEEE-CCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ----c--cHHHHHHHHHHCCeee-ecCC-CC-CCeEEEE-ecCCCCHHHHHHHHHHHHHHHhh
Confidence                0  0234666777788543 2211 11 4689999 77788999999999999988754

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.90  E-value=1.3e-22  Score=197.62  Aligned_cols=332  Identities=12%  Similarity=0.064  Sum_probs=202.3

Q ss_pred             CCCCccccccCCCChHHhHHHHHHHHc-CcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHH
Q psy12303         71 GHPMFMNQLSCGLDVVSMAGEWLIATA-NTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAA  149 (480)
Q Consensus        71 ~~p~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~  149 (480)
                      ++..|++....+..+ ..+.+++..+. ......|...+...+    +++++++++|.+.  .++++|||+|+..++.++
T Consensus        10 ~~~~~l~~~~~p~~~-~~~~~~~~~~~~~~~~~~y~~~~~~~~----l~~~la~~~~~~~--~i~~~~G~~a~~~al~~~   82 (357)
T 3lws_A           10 QQTTGQISGHGKRNV-GVLKTAFAAVADEMASDQYGTGAIIEP----FEQKFADVLGMDD--AVFFPSGTMAQQVALRIW   82 (357)
T ss_dssp             HTCSEESSBSSCCBH-HHHHHHHTTSCTTCBCEETTEETTHHH----HHHHHHHHHTCSE--EEEESCHHHHHHHHHHHH
T ss_pred             HhhcccccCCCCCCH-HHHHHHHHHhhcccCcccccCChHHHH----HHHHHHHHhCCCc--EEEecCcHHHHHHHHHHH
Confidence            344566655554433 33434444321 112233444444444    5566888899864  577789999999999888


Q ss_pred             HHhcCchhHhcCCCccCCce-EEEecCCCchhHHH---HHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCcc
Q psy12303        150 RHKMFPTYKEKGLSAIKGQL-VMFTSDQCHYSVRS---CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIP  225 (480)
Q Consensus       150 ~~~~~~~~~~~g~~~~~g~~-~vl~~~~~h~s~~~---~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~  225 (480)
                      ...              |+. +|+++...|++...   .+...|.   +++.+|. +++.+|+++|+++.  +      +
T Consensus        83 ~~~--------------gd~~~vi~~~~~~~~~~~~~~~~~~~g~---~~~~v~~-~~~~~d~~~l~~~~--~------~  136 (357)
T 3lws_A           83 SDE--------------TDNRTVAYHPLCHLEIHEQDGLKELHPI---ETILVGA-ADRLMTLDEIKALP--D------I  136 (357)
T ss_dssp             HHH--------------HTCCEEEECTTCHHHHSSTTHHHHHSSC---EEEECSC-TTSCCCHHHHHTCC--S------C
T ss_pred             hhc--------------CCCcEEEecccceeeeeccchhhhccCc---EEEEecC-CCCCcCHHHHhcCc--C------c
Confidence            763              232 78888888887654   3444555   6777774 46789999998871  1      7


Q ss_pred             EEEEeccCCCcc-ccccC---hHHHHHHHHHcCcEEEeecccccccccc-c-cccCcccCCCCCCccceeCccccCCCcc
Q psy12303        226 FFVNCTSGTTVL-GAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLS-K-KYRHPRLTGIERADSVTWNPHKLMGTLL  299 (480)
Q Consensus       226 ~~v~~~~~~~~~-G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~-~-~~~~~~~~~~~~~D~~~~s~hK~~~~p~  299 (480)
                      ++|++++++|++ |.+.+   +++|.++|++||+++|+|++|....... . .... ..   ..+|+++.++||++++|.
T Consensus       137 ~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~-~~---~~~d~~~~s~sK~~~~~~  212 (357)
T 3lws_A          137 ACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAE-IA---GLFDSIYISFYKGLGGIA  212 (357)
T ss_dssp             SEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHH-HH---TTSSEEEEESSSTTCCSS
T ss_pred             ceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHH-HH---hcCCEEEEeccccCCCCc
Confidence            789999999998 88765   8999999999999999999987322110 0 0000 11   257888999999997777


Q ss_pred             cceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q psy12303        300 QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMV  379 (480)
Q Consensus       300 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~  379 (480)
                      + |+++ .++++..........+- .           +.      +...... .+++..+  +...+.+++..++++++.
T Consensus       213 g-g~~~-~~~~~~~~~~~~~~~~~-~-----------~~------~~~~~~~-~~~~~~l--~~~~~~~~~~~~~~~~l~  269 (357)
T 3lws_A          213 G-AILA-GPAAFCQTARIWKRRYG-G-----------DL------ISLYPYI-VSADYYY--ELRKDRMGQYYEQAKQLA  269 (357)
T ss_dssp             C-EEEE-ECHHHHHHHHHHHHHTT-C-----------CC------SCCHHHH-HHHHHHH--HHHTTCHHHHHHHHHHHH
T ss_pred             e-EEEE-cCHHHHHHHHHHHHHhc-C-----------Cc------ccchHHH-HHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            6 6655 56655544321110000 0           00      0001111 1112221  123344555678899999


Q ss_pred             HHHhcCCCCeEEe-cCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeee-CCcccEEEEecc
Q psy12303        380 KKIKSMPDKFYLI-LEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPL-NDLPNFFRNIIS  457 (480)
Q Consensus       380 ~~l~~~~~g~~~~-~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~-~~~~~~~R~~~~  457 (480)
                      +.|++ ++++++. .++..+.+++.+.....           .  ...++.+.|.++|+++...... .+ ..++|+++.
T Consensus       270 ~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~l~~~Gi~v~~g~~~~~~-~~~~r~~i~  334 (357)
T 3lws_A          270 EQFNA-LPGVHTTPEVPVSNMFHLHFDGQAA-----------D--ISPKLEQVQEETGLGFVGYLVDKDG-YCSTEISVG  334 (357)
T ss_dssp             HHHHT-STTEEEESSSCSSSEEEEEEESCHH-----------H--HHHHHHHHHHHHCEESCSCCEECSS-EEEEEEEBC
T ss_pred             HHHHh-CCCCeeccCCCcceEEEEEecCChH-----------H--HHHHHHHHHHhcCeEEecccccCCC-ceEEEEEec
Confidence            99999 8999985 34555555444321100           0  0235667788888543322111 23 468999843


Q ss_pred             c--CCCCHHHHHHHHHHHHHhh
Q psy12303        458 S--AAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       458 ~--~~~t~~di~~~~~~l~~~~  477 (480)
                      .  ...+++++++.+++|.+.+
T Consensus       335 ~~~~~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          335 DAYGELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHC
T ss_pred             chhhhcCHHHHHHHHHHHHHhc
Confidence            2  3468999999999998764

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.90  E-value=1.2e-22  Score=202.71  Aligned_cols=303  Identities=13%  Similarity=0.083  Sum_probs=189.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchh-HHHHHH--Hc
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS-VRSCAA--VC  188 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s-~~~~~~--~~  188 (480)
                      .+++..++++++++|.+. ..++++|||+|+..++.++..              ||+ .|+++..+|.+ ....+.  ..
T Consensus        78 ~~~~~a~~~~~~~~~~~~-~~v~~~~Gs~a~~~al~~~~~--------------~gd-~Vi~~~~~~~~~~~~~~~~~~~  141 (425)
T 3ecd_A           78 EVEALAIERVKRLFNAGH-ANVQPHSGAQANGAVMLALAK--------------PGD-TVLGMSLDAGGHLTHGAKPALS  141 (425)
T ss_dssp             HHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHCC--------------TTC-EEEEECC---------------
T ss_pred             HHHHHHHHHHHHHhCCCC-ceeecCchHHHHHHHHHHccC--------------CCC-EEEEcccccccceecchhhhhc
Confidence            455556688999999876 234689999999999887743              556 78888889987 223332  33


Q ss_pred             CCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccc
Q psy12303        189 GLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGL  267 (480)
Q Consensus       189 g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~  267 (480)
                      |.+. .++.++.++ ++.+|+++|++++++.     ++++|+++++++  |...++++|.++|++||+++|+|++|+.+.
T Consensus       142 g~~~-~~~~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~--~~~~~l~~i~~l~~~~~~~li~De~~~~g~  213 (425)
T 3ecd_A          142 GKWF-NALQYGVSRDTMLIDYDQVEALAQQH-----KPSLIIAGFSAY--PRKLDFARFRAIADSVGAKLMVDMAHIAGV  213 (425)
T ss_dssp             ---C-EEEEECCCTTTSSCCHHHHHHHHHHH-----CCSEEEEECSCC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHH
T ss_pred             ccce-eeeecCCCcccCccCHHHHHHHHhhc-----CCcEEEEccccC--CCcCCHHHHHHHHHHcCCEEEEECcChHhh
Confidence            4322 344566653 4789999999999753     178888887765  788999999999999999999999987665


Q ss_pred             cccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC-
Q psy12303        268 LLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-  346 (480)
Q Consensus       268 ~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-  346 (480)
                      ........ .   +..+|+++.|+||++++|. .|+++.+++.+.............                  .+.. 
T Consensus       214 ~~~~~~~~-~---~~~~di~~~s~sK~l~g~~-~g~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~  270 (425)
T 3ecd_A          214 IAAGRHAN-P---VEHAHVVTSTTHKTLRGPR-GGFVLTNDEEIAKKINSAVFPGLQ------------------GGPLM  270 (425)
T ss_dssp             HHTTSSCC-G---GGTCSEEEEESSGGGCCCS-CEEEEESCHHHHHHHHHHHC-----------------------CCCH
T ss_pred             hhcccccC-c---hhcCcEEEecCCcccCCCC-cEEEEeCCHHHHHHHHhhhCcccc------------------CCccH
Confidence            53322111 1   2247899999999997664 577776655444332211000000                  0000 


Q ss_pred             CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC-ceeEEEEEeecCccCCCchhhHHHHhhhhh
Q psy12303        347 NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP-EMVNVSFWYLPTRVRNMPHEKRLNILGEIT  425 (480)
Q Consensus       347 ~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~  425 (480)
                      ....+++.++.....++++++.++..++++++.+.|.+  .|++++.++ ....+.+.+.+....              .
T Consensus       271 ~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~~~~~~~~~~~~~--------------~  334 (425)
T 3ecd_A          271 HVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKA--GGVDLVTGGTDNHLLLVDLRPKGLK--------------G  334 (425)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSCSSSEEEEECGGGTCC--------------H
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh--CCCeeccCCCCceEEEEEeCCCCCC--------------H
Confidence            12233444444444567788899999999999999999  689886533 333444433221111              2


Q ss_pred             HHHHHHHHhcccEEEeeeeeCC------cccEEEEecc---cCCCCHHHHHHHHHHHHHhhc
Q psy12303        426 PILKGRMMQAGTMMVGYQPLND------LPNFFRNIIS---SAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       426 ~~i~~~l~~~g~~~~~~~~~~~------~~~~~R~~~~---~~~~t~~di~~~~~~l~~~~~  478 (480)
                      ..+.+.|.+.|+.+... ...+      ..+.+|+++.   ....++++|+++++.|+++++
T Consensus       335 ~~~~~~l~~~gi~v~~~-~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~  395 (425)
T 3ecd_A          335 AQVEQALERAGITCNKN-GIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFE  395 (425)
T ss_dssp             HHHHHHHHHTTEECEEC-CCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCEeccc-ccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHh
Confidence            35567777778554421 1111      1358999832   233459999999999988765

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.90  E-value=3.3e-23  Score=216.58  Aligned_cols=324  Identities=17%  Similarity=0.129  Sum_probs=203.1

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH-HHHcCCCC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC-AAVCGLGT  192 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~-~~~~g~~~  192 (480)
                      -.++++.+++++|.+. .+++++|+|+||..++.+...              ||+ .|+++..+|.|+..+ +...|.  
T Consensus       175 i~e~e~~lA~~~gae~-~i~v~nGtt~an~~ai~al~~--------------pGD-~VLv~~~~H~S~~~~~~~l~Ga--  236 (730)
T 1c4k_A          175 AVAAEKHAARVYNADK-TYFVLGGSSNANNTVTSALVS--------------NGD-LVLFDRNNHKSVYNSALAMAGG--  236 (730)
T ss_dssp             HHHHHHHHHHHTTCSE-EEEESSHHHHHHHHHHHHHCC--------------TTC-EEEEETTCCHHHHHHHTTTTCC--
T ss_pred             HHHHHHHHHHHHCCCc-EEEECCHHHHHHHHHHHHhcC--------------CCC-EEEEcCCchHHHHHHHHHHCCC--
Confidence            4467788999999975 467788888999999888754              556 899999999999988 777676  


Q ss_pred             CCeEEeeCCCC-----CCCCHHHH-----HHHHHHH-HH--CCCcc-EEEEeccCCCccccccChHHHHHHHHHcCcEEE
Q psy12303        193 DNCVEVPSDKR-----GRLIPSEL-----ERLVLER-KA--KGDIP-FFVNCTSGTTVLGAFDPIEEIADICQKYNMWLH  258 (480)
Q Consensus       193 ~~v~~v~~~~~-----~~~d~~~L-----~~~i~~~-~~--~~~~~-~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~  258 (480)
                       ++++++.+.+     +.+|+++|     ++++++. .+  ....+ ++|+++++ |++|.+.|+++|+++|++||+++|
T Consensus       237 -~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~li  314 (730)
T 1c4k_A          237 -RPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIE  314 (730)
T ss_dssp             -EEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEE
T ss_pred             -EEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEE
Confidence             7777765432     34788888     7776542 11  01123 78899998 589999999999999999999999


Q ss_pred             eecccccccccccccc--CcccCCCCCCc----cceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCc
Q psy12303        259 VDAAWGGGLLLSKKYR--HPRLTGIERAD----SVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDV  332 (480)
Q Consensus       259 vD~a~~~~~~~~~~~~--~~~~~~~~~~D----~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  332 (480)
                      +|+||+.+..+.+..+  .+......++|    +++.|+||++++|.++|+++++++.+..     ...++.....  ..
T Consensus       315 vDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g-----~~~~i~~~~~--~~  387 (730)
T 1c4k_A          315 FDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKG-----QLRYCDHKHF--NN  387 (730)
T ss_dssp             EECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTT-----STTCCCHHHH--HH
T ss_pred             EEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcC-----cccccCHHHH--HH
Confidence            9999986544333221  10111011566    8999999999988888999888764311     0011100000  00


Q ss_pred             ccCCCCccccCCCCC--CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc--------------
Q psy12303        333 RYDTGDKVIQCGRHN--DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE--------------  396 (480)
Q Consensus       333 ~~~~~~~~~~~~r~~--~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~--------------  396 (480)
                      .+.    .++.+...  ...++-.+++.+..++..+.+++..++++++++.|++.++|++++.+..              
T Consensus       388 ~~~----~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~  463 (730)
T 1c4k_A          388 SFN----LFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDM  463 (730)
T ss_dssp             HHH----HHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHH
T ss_pred             HHH----HhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccc
Confidence            000    00111111  1122223444444433466788999999999999986348999865421              


Q ss_pred             ----------------------ee---E----EEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCC
Q psy12303        397 ----------------------MV---N----VSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLND  447 (480)
Q Consensus       397 ----------------------~~---~----v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~  447 (480)
                                            .+   +    +++.. |. +...+. ++ .....-...+.+.|.++|+ .+...   +
T Consensus       464 ~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~-pg-~~~~~g-~~-~~~g~~~~~l~~~L~e~GI-~v~~~---~  535 (730)
T 1c4k_A          464 ANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTT-PG-INPETG-DY-EDFGVPATIVANYLRDHGI-IPEKS---D  535 (730)
T ss_dssp             TTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEEC-SS-EETTTT-EE-CSSCCCHHHHHHHHHHTTC-CCSEE---C
T ss_pred             cccchhhccCccchhccccccCCcccccCCeEEEEEe-CC-cccccc-cc-cccCCCHHHHHHHHHHCCc-EEEEC---C
Confidence                                  00   0    22221 10 000000 00 0000013456778888874 33322   2


Q ss_pred             cccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        448 LPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       448 ~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                       ...+|++ ++..+|++++++++++|+++.+
T Consensus       536 -~~~ir~~-~s~g~t~e~i~~Ll~aL~~i~~  564 (730)
T 1c4k_A          536 -LNSILFL-MTPAETPAKMNNLITQLLQLQR  564 (730)
T ss_dssp             -SSEEEEE-CCTTCCHHHHHHHHHHHHHHHH
T ss_pred             -CCeEEEE-eCCCCCHHHHHHHHHHHHHHHH
Confidence             4689999 8999999999999999988764

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.90  E-value=1.5e-21  Score=196.60  Aligned_cols=319  Identities=13%  Similarity=0.117  Sum_probs=195.6

Q ss_pred             chhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCc-hhH
Q psy12303        103 TYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH-YSV  181 (480)
Q Consensus       103 ~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h-~s~  181 (480)
                      .|...+...+    +++.+++++|.+  ++++|+|||+|+..++.++.+              ||+   +++..+| .++
T Consensus        70 ~y~~~~~~~~----l~~~la~~~~~~--~~~~~~~gt~a~~~al~~l~~--------------~gd---i~~~~~~~~~~  126 (456)
T 2ez2_A           70 AYAGSENFYH----LERTVQELFGFK--HIVPTHQGRGAENLLSQLAIK--------------PGQ---YVAGNMYFTTT  126 (456)
T ss_dssp             CSSSCHHHHH----HHHHHHHHHCCS--EEEEESSHHHHHHHHHHHHCC--------------TTC---EEEESSCCHHH
T ss_pred             hcccChhHHH----HHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHhCC--------------CCC---Eeccccccchh
Confidence            3444444444    455678888876  599999999999999988743              556   4455677 887


Q ss_pred             HHHHHHcCCCCCCeEEeeCCC----------CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCC-ccccccC---hHHHH
Q psy12303        182 RSCAAVCGLGTDNCVEVPSDK----------RGRLIPSELERLVLERKAKGDIPFFVNCTSGTT-VLGAFDP---IEEIA  247 (480)
Q Consensus       182 ~~~~~~~g~~~~~v~~v~~~~----------~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~-~~G~~~~---l~~I~  247 (480)
                      ..++...|.   +++.+++++          ++.+|+++|++++++...  ..+++|++++++| ++|.+.+   +++|.
T Consensus       127 ~~~~~~~G~---~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~--~~~~~v~l~~p~n~ptG~~~~~~~l~~i~  201 (456)
T 2ez2_A          127 RYHQEKNGA---VFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGA--ENIAYICLAVTVNLAGGQPVSMANMRAVR  201 (456)
T ss_dssp             HHHHHHTTC---EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHHHHH
T ss_pred             HHHHHHcCC---EEEEecccccccccccccccCCCCHHHHHHHHHhccc--cceeEEEEeccCCCCCCccCCHHHHHHHH
Confidence            888888887   778888763          268999999999987510  1248999999988 9999876   99999


Q ss_pred             HHHHHcCcEEEeecccccc---------ccccccccCcc--cCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhh
Q psy12303        248 DICQKYNMWLHVDAAWGGG---------LLLSKKYRHPR--LTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCN  316 (480)
Q Consensus       248 ~i~~~~~~~l~vD~a~~~~---------~~~~~~~~~~~--~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~  316 (480)
                      ++|++||+++|+|++|+.+         .......-.+.  ..+ ...|++++|+||+++.| ..|+++.+++++.....
T Consensus       202 ~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~  279 (456)
T 2ez2_A          202 ELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMF-SYADGCTMSGKKDCLVN-IGGFLCMNDDEMFSSAK  279 (456)
T ss_dssp             HHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHH-TTCSEEEEETTTTTCCS-SCEEEEESCHHHHHHHH
T ss_pred             HHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhc-ccCCEEEEeCcccCCCC-ceeEEEECCHHHHHHHH
Confidence            9999999999999999874         11111100000  001 14688888899998754 46777765665544332


Q ss_pred             cCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHhcCCCCeEEecCC
Q psy12303        317 QMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGF-EKQIDRLMELAEYMVKKIKSMPDKFYLILEP  395 (480)
Q Consensus       317 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~-~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~  395 (480)
                      .....+. +. ..      .      .+.+...+.+ +++..  .+.+ ++..++..++++++.+.|++  .|++++. |
T Consensus       280 ~~~~~~~-~~-~~------~------~~~~~~~~~a-~a~~~--~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~-p  339 (456)
T 2ez2_A          280 ELVVVYE-GM-PS------Y------GGLAGRDMEA-MAIGL--REAMQYEYIEHRVKQVRYLGDKLKA--AGVPIVE-P  339 (456)
T ss_dssp             HHHHHHT-CC-TT------T------TTCCHHHHHH-HHHHH--HHHTCHHHHHHHHHHHHHHHHHHHH--TTCCBCS-S
T ss_pred             HHHhhcc-Cc-cc------c------cCcchhHHHH-HHHHH--HHHhHHHHHHHHHHHHHHHHHHHhc--CCCcccc-C
Confidence            1111110 00 00      0      0100111111 12211  1233 46667778889999999998  4887654 4


Q ss_pred             ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHH-HhcccEEEeeeee-------------CCcccEEEEecccCC-
Q psy12303        396 EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRM-MQAGTMMVGYQPL-------------NDLPNFFRNIISSAA-  460 (480)
Q Consensus       396 ~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~~~g~~~~~~~~~-------------~~~~~~~R~~~~~~~-  460 (480)
                      ..+.+++...+.-..+.+..+    +.  ...+.++| .+.|+..+..+..             .+ .+++|++ ++.. 
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~----~~--~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~-~~~iRis-~~~~~  411 (456)
T 2ez2_A          340 VGGHAVFLDARRFCEHLTQDE----FP--AQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPK-LETVRLT-IPRRV  411 (456)
T ss_dssp             CCSSEEEEEHHHHTTTSCGGG----CH--HHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCS-CCEEEEE-CCTTT
T ss_pred             CCceEEEEEhHHhcCCCChhh----cc--HHHHHHHHHHhcCeeeecccccccccCccccccccCC-CCeEEEE-eCCCC
Confidence            444444433210000111111    10  23345566 4667544332210             11 3689999 4444 


Q ss_pred             CCHHHHHHHHHHHHHhhcc
Q psy12303        461 VTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       461 ~t~~di~~~~~~l~~~~~~  479 (480)
                      ++++||++++++|++++++
T Consensus       412 ~t~e~i~~~~~~l~~~l~~  430 (456)
T 2ez2_A          412 YTYAHMDVVADGIIKLYQH  430 (456)
T ss_dssp             CCHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHhh
Confidence            8999999999999987653

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.90  E-value=3.6e-22  Score=196.66  Aligned_cols=217  Identities=16%  Similarity=0.063  Sum_probs=158.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH----HHH
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC----AAV  187 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~----~~~  187 (480)
                      ....++++++++++|.+  ..+++++|++|+..++.++..              +|+ .|+++...|.+....    +..
T Consensus        59 ~~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~~~~~--------------~gd-~vl~~~~~y~~~~~~~~~~~~~  121 (389)
T 3acz_A           59 PTVEQFEEMVCSIEGAA--GSAAFGSGMGAISSSTLAFLQ--------------KGD-HLIAGDTLYGCTVSLFTHWLPR  121 (389)
T ss_dssp             HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHTTTCC--------------TTC-EEEEESSCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHhC--------------CCC-EEEEeCCCchHHHHHHHHHHHH
Confidence            34456677799999987  477888899999888876532              445 788888899987766    466


Q ss_pred             cCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccc
Q psy12303        188 CGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGL  267 (480)
Q Consensus       188 ~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~  267 (480)
                      .|+   +++.++.+     |+++|+++++++      +++|++++++|++|.+.|+++|.++|+++|+++|+|++|+.+.
T Consensus       122 ~g~---~~~~v~~~-----d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~  187 (389)
T 3acz_A          122 FGI---EVDLIDTS-----DVEKVKAAWKPN------TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPC  187 (389)
T ss_dssp             TTC---EEEEECTT-----CHHHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred             cCC---EEEEECCC-----CHHHHHHhcCCC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccc
Confidence            677   78888864     899999988764      8999999999999999999999999999999999999998775


Q ss_pred             cccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCC
Q psy12303        268 LLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGR  345 (480)
Q Consensus       268 ~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r  345 (480)
                      ...+ ...       ++|+++.|+||++++|.+  +|+++.++.+........... .                    +.
T Consensus       188 ~~~~-~~~-------~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~-~--------------------g~  238 (389)
T 3acz_A          188 FLKP-LEL-------GADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKD-A--------------------GS  238 (389)
T ss_dssp             TCCG-GGT-------TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHH-H--------------------CC
T ss_pred             ccCc-ccc-------CCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHh-c--------------------CC
Confidence            4222 123       789999999999998866  588887663444332211000 0                    00


Q ss_pred             CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Q psy12303        346 HNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYL  391 (480)
Q Consensus       346 ~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~  391 (480)
                      .......|+.++.+  +.+..+.++..++++.+.+.|++ .+.+.-
T Consensus       239 ~~~~~~~~~~~~~l--~~l~~r~~~~~~~~~~l~~~l~~-~~~v~~  281 (389)
T 3acz_A          239 LMAPMDAFLCARGM--KTLPIRMQIHMENGLKVAKFLEQ-HEKIVK  281 (389)
T ss_dssp             CCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHH-CTTEEE
T ss_pred             CCCHHHHHHHHcCc--cHHHHHHHHHHHHHHHHHHHHHc-CCCeeE
Confidence            12334566665553  34455667777888888888888 665543

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.90  E-value=5.9e-22  Score=197.03  Aligned_cols=217  Identities=16%  Similarity=0.161  Sum_probs=157.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH----HH
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA----AV  187 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~----~~  187 (480)
                      ....++++.+++++|.+  ..+++++|++|+..++.++..              ||+ .|+++...|.++...+    ..
T Consensus       114 ~~~~~l~~~lA~l~g~~--~~v~~~sG~~Ai~~al~~l~~--------------~Gd-~Vi~~~~~y~~~~~~~~~~~~~  176 (445)
T 1qgn_A          114 PTTVVLEEKISALEGAE--STLLMASGMCASTVMLLALVP--------------AGG-HIVTTTDCYRKTRIFIETILPK  176 (445)
T ss_dssp             HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHSC--------------SSC-EEEEETTSCHHHHHHHHHTGGG
T ss_pred             hHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHhC--------------CCC-EEEEcCCCchhHHHHHHHHHHH
Confidence            44456677789999986  356666777999999887643              455 7888888898877653    34


Q ss_pred             cCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCcc-EEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccc
Q psy12303        188 CGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIP-FFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGG  266 (480)
Q Consensus       188 ~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~-~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~  266 (480)
                      .|+   ++++++.+     |+++|+++++++      + ++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+
T Consensus       177 ~G~---~v~~v~~~-----d~~~l~~ai~~~------tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~  242 (445)
T 1qgn_A          177 MGI---TATVIDPA-----DVGALELALNQK------KVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATP  242 (445)
T ss_dssp             GTC---EEEEECSS-----CHHHHHHHHHHS------CEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred             cCC---EEEEeCCC-----CHHHHHHHhccC------CCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccc
Confidence            465   78888875     899999999875      7 99999999999999999999999999999999999999876


Q ss_pred             ccccccccCcccCCCCCCccceeCccccCCCcc--cceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCC
Q psy12303        267 LLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL--QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCG  344 (480)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~--~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  344 (480)
                      ....+ ...       ++|+++.|+||+++++.  ..|+++.++ +++.....    +...                 .+
T Consensus       243 ~~~~~-~~~-------g~Div~~S~sK~~gg~gd~~~G~l~~~~-~l~~~l~~----~~~~-----------------~g  292 (445)
T 1qgn_A          243 LNQKA-LAL-------GADLVLHSATKFLGGHNDVLAGCISGPL-KLVSEIRN----LHHI-----------------LG  292 (445)
T ss_dssp             TTCCT-TTT-------TCSEEEECTTTTTTCSSSCCCEEEEECH-HHHHHHHH----HHHH-----------------HC
T ss_pred             ccCCc-ccc-------CCEEEEECCcccccccccceEEEEEECH-HHHHHHHH----HHHH-----------------hC
Confidence            54322 233       78999999999998543  278777654 44433211    0000                 01


Q ss_pred             CCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCe-EEe
Q psy12303        345 RHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKF-YLI  392 (480)
Q Consensus       345 r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~-~~~  392 (480)
                      .....+.+|..++.  .+.+..++++..++++++.+.|++ .|++ .+.
T Consensus       293 ~~~~~~~a~~~~~~--l~~l~~r~~~~~~~a~~l~~~L~~-~p~v~~v~  338 (445)
T 1qgn_A          293 GALNPNAAYLIIRG--MKTLHLRVQQQNSTALRMAEILEA-HPKVRHVY  338 (445)
T ss_dssp             CCCCHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHHHHT-CTTEEEEE
T ss_pred             CCCCHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHhc-CCCceEEE
Confidence            11234455665544  344566777888889999999999 8888 444

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.90  E-value=4e-22  Score=201.39  Aligned_cols=353  Identities=13%  Similarity=0.151  Sum_probs=199.6

Q ss_pred             CccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhc
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKM  153 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~  153 (480)
                      .|+++..+... +.+. +.+...+......|...+...    ++++++++++|.+  ++++|+|||+|+..++.+++...
T Consensus        44 ~ylD~~~~~~~-~~v~-~a~~~~~~~~~~~y~~~~~~~----~l~~~la~~~~~~--~v~~t~ggt~A~~~al~~~~~~~  115 (467)
T 1ax4_A           44 VYIDLLTDSGT-NAMS-DHQWAAMITGDEAYAGSRNYY----DLKDKAKELFNYD--YIIPAHQGRGAENILFPVLLKYK  115 (467)
T ss_dssp             CSEECSCSSSC-CCEE-HHHHHHHHTCCCCSSSCHHHH----HHHHHHHHHHCCC--EEEEESSHHHHHHHHHHHHHHHH
T ss_pred             eeeecccCcCC-HHHH-HHHHHHHhhcccccccCccHH----HHHHHHHHHcCCC--cEEEcCCcHHHHHHHHHHHHHhh
Confidence            47777554433 3333 322232222222344344433    4566688888874  59999999999999999987521


Q ss_pred             CchhHhcCCCccCCce--EEEecCCCc-hhHHHHHHHcCCCCCCeEEeeCC----------CCCCCCHHHHHHHHHHHHH
Q psy12303        154 FPTYKEKGLSAIKGQL--VMFTSDQCH-YSVRSCAAVCGLGTDNCVEVPSD----------KRGRLIPSELERLVLERKA  220 (480)
Q Consensus       154 ~~~~~~~g~~~~~g~~--~vl~~~~~h-~s~~~~~~~~g~~~~~v~~v~~~----------~~~~~d~~~L~~~i~~~~~  220 (480)
                          ..      ||+.  .|+++ ..| .++..++...|.   .++.++.+          .++.+|+++|++++++.. 
T Consensus       116 ----~~------~Gd~~~~viv~-~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~-  180 (467)
T 1ax4_A          116 ----QK------EGKAKNPVFIS-NFHFDTTAAHVELNGC---KAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG-  180 (467)
T ss_dssp             ----HH------TTCCSSCEEEE-SSCCHHHHHHHHHTTC---EEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC-
T ss_pred             ----cc------CCCccceEEEe-ccccchhhHHHhccCC---ceecccccccccccccCCcccccCHHHHHHHHHhcC-
Confidence                00      3342  15666 455 555667777776   55555432          146799999999998631 


Q ss_pred             CCCccEEEEeccCCCcc-ccc---cChHHHHHHHHHcCcEEEeeccccc-cccccc-----cccCcccCCC-----CCCc
Q psy12303        221 KGDIPFFVNCTSGTTVL-GAF---DPIEEIADICQKYNMWLHVDAAWGG-GLLLSK-----KYRHPRLTGI-----ERAD  285 (480)
Q Consensus       221 ~~~~~~~v~~~~~~~~~-G~~---~~l~~I~~i~~~~~~~l~vD~a~~~-~~~~~~-----~~~~~~~~~~-----~~~D  285 (480)
                       ..++++|++++++|++ |.+   +++++|.++|++||+++|+|++++. +..+..     .... ....+     +.+|
T Consensus       181 -~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d  258 (467)
T 1ax4_A          181 -ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNA-TIKEVIFDMYKYAD  258 (467)
T ss_dssp             -GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTC-CHHHHHHHHGGGCS
T ss_pred             -CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCC-chhhhhhhhccccc
Confidence             1138999999999999 776   4578999999999999999998765 221000     0000 00000     2578


Q ss_pred             cceeCccccCCCcccceEEEEeCc-hhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCc-hHHHHHHHHhcHHH
Q psy12303        286 SVTWNPHKLMGTLLQCSTIHFKQD-GLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI-FKLWLQWRAKGDEG  363 (480)
Q Consensus       286 ~~~~s~hK~~~~p~~~g~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~-l~~~~~l~~~g~~~  363 (480)
                      ++++++||+++.|.| |+++.+++ ++..........+  .....      +      .+..... .++..++...-.  
T Consensus       259 ~~~~s~sK~~g~~~G-g~~~~~d~~~l~~~~~~~~~~~--~~~~~------~------~~~~~~~~~a~~~~l~~~~~--  321 (467)
T 1ax4_A          259 ALTMSAKKDPLLNIG-GLVAIRDNEEIFTLARQRCVPM--EGFVT------Y------GGLAGRDMAAMVQGLEEGTE--  321 (467)
T ss_dssp             EEEEETTSTTCCSSC-EEEEESSCHHHHHHHHHHHHHH--TCSTT------T------TTCCHHHHHHHHHHHHHTTC--
T ss_pred             eEEEeccccCCCCcc-eEEEeCCHHHHHHHHHhhcccc--ccccc------c------CCccchHHHHHHHHHHHhhh--
Confidence            899999999987643 55555545 5544332111111  00000      0      0100111 111113332111  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHH-HhcccEEEee
Q psy12303        364 FEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRM-MQAGTMMVGY  442 (480)
Q Consensus       364 ~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~~~g~~~~~~  442 (480)
                       .+.+++..++++++.+.|++  ++++++. |..+.+++.............    .+.  ..++.++| .+.|+.+...
T Consensus       322 -~~~~~~~~~~~~~l~~~L~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~--~~~l~~~L~~~~gv~v~~~  391 (467)
T 1ax4_A          322 -EEYLHYRIGQVKYLGDRLRE--AGIPIQY-PTGGHAVFVDCKKLVPQIPGD----QFP--AQAVINALYLESGVRAVEI  391 (467)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHH--TTCCBCS-SCCSSEEEEESTTTCTTSCGG----GCH--HHHHHHHHHHHHCEECEEE
T ss_pred             -hhHHHHHHHHHHHHHHHHHh--CCCCccc-CCCceEEEEehhhhccccccC----CCC--HHHHHHHHHHhcCceeeec
Confidence             12444555778899999988  6887653 444444442211000000000    011  24566777 6777544431


Q ss_pred             eee-C------C-----cccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        443 QPL-N------D-----LPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       443 ~~~-~------~-----~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      +.. .      +     ..+++|++++...+|++||+++++.|+++++
T Consensus       392 g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~  439 (467)
T 1ax4_A          392 GSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKE  439 (467)
T ss_dssp             SHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHH
T ss_pred             CccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence            111 0      1     1379999954456899999999999998764

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.90  E-value=2.3e-21  Score=193.57  Aligned_cols=309  Identities=12%  Similarity=0.033  Sum_probs=190.8

Q ss_pred             HHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC-
Q psy12303        113 METVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG-  191 (480)
Q Consensus       113 ~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~-  191 (480)
                      ...++++.++++++.+.++++||+|||+|+..++++++..    .+.+|.   ||+.+|+.....|.+...++...|.. 
T Consensus        87 ~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~----~~~~g~---~~~~vi~~~~~yh~~~~~~~~~~~~~~  159 (429)
T 1s0a_A           87 PAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQY----WQAKGE---ARQRFLTFRNGYHGDTFGAMSVCDPDN  159 (429)
T ss_dssp             HHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHH----HHHHTC---CCCEEEEETTCCCCSSHHHHTTSCTTT
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHH----hcccCC---CCCeEEEECCCCCCCchhhhhhcCCch
Confidence            3456677899999887778999999999999999987632    011121   34534444445666555454433310 


Q ss_pred             ---------CCCeEEeeCCC-----C-CCCCHHHHHHHHHHHHHCCCccEEEEeccC-CCccccccC----hHHHHHHHH
Q psy12303        192 ---------TDNCVEVPSDK-----R-GRLIPSELERLVLERKAKGDIPFFVNCTSG-TTVLGAFDP----IEEIADICQ  251 (480)
Q Consensus       192 ---------~~~v~~v~~~~-----~-~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~-~~~~G~~~~----l~~I~~i~~  251 (480)
                               ...+..++.+.     . +.+|+++|++++++.   ...+++|+++.. +|++|.+.|    +++|.++|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~  236 (429)
T 1s0a_A          160 SMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAH---RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICD  236 (429)
T ss_dssp             TTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHH---TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHH
T ss_pred             hhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhC---CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHH
Confidence                     11355666542     2 358999999999753   123778887777 789998766    999999999


Q ss_pred             HcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCccccccccccc
Q psy12303        252 KYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLY  330 (480)
Q Consensus       252 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  330 (480)
                      +||+++|+|++|+++......... ...++ ..|++++  .|++++| .++|++++++ ++...........+..     
T Consensus       237 ~~~~~li~De~~~~~g~~g~~~~~-~~~~~-~~d~~t~--sK~l~~G~~~iG~~~~~~-~~~~~l~~~~~~~~~~-----  306 (429)
T 1s0a_A          237 REGILLIADEIATGFGRTGKLFAC-EHAEI-APDILCL--GKALTGGTMTLSATLTTR-EVAETISNGEAGCFMH-----  306 (429)
T ss_dssp             HHTCEEEEECTTTTTTTTSSSSGG-GGGTC-CCSEEEE--CGGGGTSSSCCEEEEECH-HHHHHHHTSTTSSCSC-----
T ss_pred             HcCCEEEEeehhhCCcccchHHHh-hhcCC-CCCEEEe--cccccCCCccceEEEeCH-HHHHHhhcCCCccccc-----
Confidence            999999999999864322111111 11223 5677764  5988877 7899998754 4444332210000000     


Q ss_pred             CcccCCCCccccCCCCCCchHHH---HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEecCCceeEEEEEe
Q psy12303        331 DVRYDTGDKVIQCGRHNDIFKLW---LQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP---DKFYLILEPEMVNVSFWY  404 (480)
Q Consensus       331 ~~~~~~~~~~~~~~r~~~~l~~~---~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~---~g~~~~~~~~~~~v~f~~  404 (480)
                           .+++      ..+.+...   ++++.+..   ++..++..++++++.+.|++ +   +++..+ ++....+.+.+
T Consensus       307 -----~~t~------~~n~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~-~~~g~~~~~~~  370 (429)
T 1s0a_A          307 -----GPTF------MGNPLACAAANASLAILES---GDWQQQVADIEVQLREQLAP-ARDAEMVADV-RVLGAIGVVET  370 (429)
T ss_dssp             -----CCTT------TTCHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHGG-GGGCTTEEEE-EEETTEEEEEE
T ss_pred             -----CCCC------CCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHH-HhcCCCEEEE-EEeeEEEEEEE
Confidence                 0001      11233333   33333211   24567778888999998887 4   566533 23333344433


Q ss_pred             ecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        405 LPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       405 ~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                       +....              ..++.+.|.++|++ +.+.     .+++|++ ++..+|++|+++++++|++++++
T Consensus       371 -~~~~~--------------~~~l~~~l~~~Gi~-v~~~-----~~~iRis-~~~~~t~e~i~~~~~~l~~~~~~  423 (429)
T 1s0a_A          371 -THPVN--------------MAALQKFFVEQGVW-IRPF-----GKLIYLM-PPYIILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             -SSCBC--------------HHHHHHHHHHTTEE-CCCB-----TTEEEEC-CCTTCCHHHHHHHHHHHHHHTSS
T ss_pred             -CCccc--------------HHHHHHHHHHCCCE-Eecc-----CCEEEEE-CCCCCCHHHHHHHHHHHHHHHHh
Confidence             21110              23566777788843 3331     3699999 88889999999999999988754

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.90  E-value=1.7e-22  Score=202.86  Aligned_cols=317  Identities=14%  Similarity=0.081  Sum_probs=193.0

Q ss_pred             chhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCc------------
Q psy12303        103 TYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQ------------  168 (480)
Q Consensus       103 ~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~------------  168 (480)
                      .|....+..++++++.+++.+.+|.  ++.++++|+|+|+|+..++.++..              ||+            
T Consensus        78 ~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~--------------~gd~~~~~~~~~~g~  143 (444)
T 3if2_A           78 NYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGG--------------AFVNEHSQDKESKSV  143 (444)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSE--------------EEECC-------CEE
T ss_pred             ccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhC--------------CCccccccccccccc
Confidence            3544555678888888888887765  567899999999999999987753              222            


Q ss_pred             -eEEEe-cCCCchhHHHHHH----HcCCCCCCeEEeeCCC-C----CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcc
Q psy12303        169 -LVMFT-SDQCHYSVRSCAA----VCGLGTDNCVEVPSDK-R----GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVL  237 (480)
Q Consensus       169 -~~vl~-~~~~h~s~~~~~~----~~g~~~~~v~~v~~~~-~----~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~  237 (480)
                       ..|++ ..++|..+..++.    ..+.+. .++.+++++ +    +.+|+++|+++++...   .++++|++++++|++
T Consensus       144 ~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~---~~~~~v~i~~p~npt  219 (444)
T 3if2_A          144 DKSILLPLTPEYIGYSDVHVEGQHFAAVLP-HIDEVTHDGEEGFFKYRVDFEALENLPALKE---GRIGAICCSRPTNPT  219 (444)
T ss_dssp             EEEEEESSSSCCGGGTTCCSSSCCEEECCC-EEEEEEETTEEEEEEEECCHHHHHTCHHHHT---TCEEEEEEESSCTTT
T ss_pred             cceEEEeCCCCccchhhcccccchhhccCc-eEEecccccccCccccCCCHHHHHHHHHhcC---CCceEEEeCCCCCCC
Confidence             03554 3677777655431    122222 677788775 2    4799999999864321   238999999999999


Q ss_pred             ccccC---hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHh
Q psy12303        238 GAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLIS  314 (480)
Q Consensus       238 G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~  314 (480)
                      |.+.|   +++|.++|++||+++|+|++|+.+........  ......+.++++.|+||++..+.++|+++. +..+...
T Consensus       220 G~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~-~~~l~~~  296 (444)
T 3if2_A          220 GNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSD--AHLNWDNNTILCFSLSKIGLPGMRTGIIVA-DAKVIEA  296 (444)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSC--CCCCCCTTEEEEEESTTTTCGGGCCEEEEC-CHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccccccc--ccccCCCCEEEEechhhccCCCCceEEEEE-CHHHHHH
Confidence            99988   88999999999999999999985432111100  111223567888999998655577888775 4444433


Q ss_pred             hhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--cH--HHHHH-HHHHHHHHHHHHHHHHhcCCC--
Q psy12303        315 CNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--GD--EGFEK-QIDRLMELAEYMVKKIKSMPD--  387 (480)
Q Consensus       315 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g~--~~~~~-~~~~~~~l~~~l~~~l~~~~~--  387 (480)
                      .......+...                     ...+...++...+  +.  ....+ +.++..++.+.+.+.|.+.++  
T Consensus       297 ~~~~~~~~~~~---------------------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  355 (444)
T 3if2_A          297 VSAMNAVVNLA---------------------PTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDY  355 (444)
T ss_dssp             HHHHHHHHHSS---------------------CCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHhccCC---------------------CChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            22111100000                     1122222222222  11  11122 344555566666666654234  


Q ss_pred             CeEEecCCceeEEEEEeecC-ccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC-C--------cccEEEEecc
Q psy12303        388 KFYLILEPEMVNVSFWYLPT-RVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN-D--------LPNFFRNIIS  457 (480)
Q Consensus       388 g~~~~~~~~~~~v~f~~~~~-~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~-~--------~~~~~R~~~~  457 (480)
                      ++.+. .|..+.+++...+. ...              ..++.+.|.+.|+.+.+...+. +        ..+++|++ +
T Consensus       356 ~~~~~-~~~~g~~~~~~~~~~~~~--------------~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis-~  419 (444)
T 3if2_A          356 PLMIH-KPEGAIFLWLWFKDLPIS--------------TLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMS-I  419 (444)
T ss_dssp             SEEEE-CCCBSSEEEEEETTCSSC--------------HHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEE-S
T ss_pred             CceEe-cCCccEEEEEEcCCCCCC--------------HHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEE-E
Confidence            56664 34445444433332 111              2456677878885443322111 1        13689999 4


Q ss_pred             cCCCCHHHHHHHHHHHHHhhcc
Q psy12303        458 SAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       458 ~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.  ++++|++++++|++++++
T Consensus       420 ~~--~~e~i~~~l~~l~~~~~~  439 (444)
T 3if2_A          420 AA--DEQTLIDGIKVIGEVVRE  439 (444)
T ss_dssp             SS--CHHHHHHHHHHHHHHHHH
T ss_pred             eC--CHHHHHHHHHHHHHHHHH
Confidence            43  899999999999987654

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.90  E-value=7.5e-22  Score=193.20  Aligned_cols=309  Identities=12%  Similarity=0.083  Sum_probs=199.9

Q ss_pred             ChhhHHHHHHHHHHH-HHHhCCCCCCeEECCChhHHHHHHHHHH-HHhcCchhHhcCCCccCCceEEEecCCCchhHHHH
Q psy12303        107 APVFILMETVVLEKM-RQIIGWQGGDSILAPGGSISNLYAFLAA-RHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC  184 (480)
Q Consensus       107 ~~~~~~~e~~~~~~l-a~~~g~~~~~~~~t~ggt~a~~~al~~~-~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~  184 (480)
                      .|...++|    +.+ ++++|. ...+++++|||+|+..++.++ .+              ||+ .|+++..+|+++..+
T Consensus        35 ~~~~~~l~----~~~~a~~~g~-~~~~v~~~sgt~al~~al~~l~~~--------------~Gd-~Vi~~~~~~~~~~~~   94 (377)
T 3ju7_A           35 GPINQRFE----QTIMSGFFQN-RGAVTTVANATLGLMAAIQLKKRK--------------KGK-YALMPSFTFPATPLA   94 (377)
T ss_dssp             CHHHHHHH----HHHHHHTSTT-CSEEEEESCHHHHHHHHHHHHSCT--------------TCC-EEEEESSSCTHHHHH
T ss_pred             CHHHHHHH----HHHHHHHhCC-CCeEEEeCCHHHHHHHHHHHcCCC--------------CcC-EEEECCCCcHHHHHH
Confidence            44444544    447 888882 235899999999999998876 22              556 888999999999999


Q ss_pred             HHHcCCCCCCeEEeeCC-CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccc
Q psy12303        185 AAVCGLGTDNCVEVPSD-KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       185 ~~~~g~~~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                      +...|.   ++++++++ +++.+|+++|++++....   .+|++|+   +++++|.+.|+++|.++|+ ||+++|+|++|
T Consensus        95 ~~~~G~---~~~~v~~~~~~~~~d~~~l~~~i~~~~---~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~  164 (377)
T 3ju7_A           95 AIWCGL---EPYFIDISIDDWYMDKTVLWDKIEELK---EEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAP  164 (377)
T ss_dssp             HHHTTC---EEEEECBCTTTCSBCHHHHHHHHHHHG---GGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTT
T ss_pred             HHHcCC---EEEEEecCCccCCcCHHHHHHHHhcCC---CCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCC
Confidence            999988   88999988 468999999999984321   1267776   4567899999999999999 99999999999


Q ss_pred             cccccccccccCccc-CCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcccc
Q psy12303        264 GGGLLLSKKYRHPRL-TGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQ  342 (480)
Q Consensus       264 ~~~~~~~~~~~~~~~-~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  342 (480)
                      +.+......    .. ....+++++++++||++++ ...|++++++.++..........-.   ...    ++  .....
T Consensus       165 a~g~~~~~~----~~g~~~~d~~~~S~~~~K~l~~-g~gG~~~~~~~~l~~~~~~~~~~g~---~~~----~~--~~~~g  230 (377)
T 3ju7_A          165 GFGLMNGGM----HYGQDFSGMIIYSFHATKPFGI-GEGGLIYSKNEEDIQRIKRMGNFGF---DTN----RE--CTMMG  230 (377)
T ss_dssp             CTTCEETTE----ETTTTCSSEEEEECBTTSSSCC-BSCEEEEESCHHHHHHHHHHTBTTB---CTT----SC--BCSSC
T ss_pred             ccCCeECCE----eccCCCCcEEEEECCCCCcCCC-CCcEEEEECCHHHHHHHHHHHhcCC---CCC----Cc--eeecc
Confidence            877542211    11 1112455666678899997 4567777777665443322111000   000    00  00111


Q ss_pred             CCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEE-ecCCce----eE-EEEEeecCccCCCchhh
Q psy12303        343 CGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYL-ILEPEM----VN-VSFWYLPTRVRNMPHEK  416 (480)
Q Consensus       343 ~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~-~~~~~~----~~-v~f~~~~~~~~~~~~~~  416 (480)
                      .+.+...+.++..+..  .+.+++..++..++++++.+.|++ ++++.+ +.++..    .. +.+. .+...   +   
T Consensus       231 ~~~~~~~~~aa~~~~~--l~~l~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~---  300 (377)
T 3ju7_A          231 FNCKMSEYAAAIGIAT--MKKWDDKLKERTRISEWYKQLLQS-NGLMKKGWQLQKTEAVIQQFMPIL-CPEEV---R---  300 (377)
T ss_dssp             CBCCCCHHHHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHH-TTTTTTTCBCCCCSCBCCSSEEEE-CCTTS---C---
T ss_pred             ccCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcC-CCCccccccCCCCCcceEEEEEEE-eCChh---h---
Confidence            1222345555555544  567788889999999999999998 765421 111111    11 1222 12110   0   


Q ss_pred             HHHHhhhhhHHHHHHHHhcccEEEeee--ee------C-----C-------cccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        417 RLNILGEITPILKGRMMQAGTMMVGYQ--PL------N-----D-------LPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       417 ~~~~l~~~~~~i~~~l~~~g~~~~~~~--~~------~-----~-------~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                              .+++.+.|.++|+......  +.      .     .       ....+|++ +++.+|++||+++++.|+++
T Consensus       301 --------~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp-~~~~~t~~di~~v~~~l~~~  371 (377)
T 3ju7_A          301 --------NKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLP-LWEGMTKEIVEQIVICLGQK  371 (377)
T ss_dssp             --------HHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEEC-CCTTCCHHHHHHHHHHHTC-
T ss_pred             --------HHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECC-CCCCCCHHHHHHHHHHHHHH
Confidence                    2467788888885422111  00      0     0       03689999 89999999999999999887


Q ss_pred             hc
Q psy12303        477 GH  478 (480)
Q Consensus       477 ~~  478 (480)
                      +.
T Consensus       372 ~~  373 (377)
T 3ju7_A          372 VV  373 (377)
T ss_dssp             --
T ss_pred             Hh
Confidence            64

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.89  E-value=1.9e-22  Score=199.41  Aligned_cols=339  Identities=10%  Similarity=-0.013  Sum_probs=210.9

Q ss_pred             CCCCCccccccCCCChHHhHHHHHHH-HcCc-CCcchhcChhhHHHHHHHHHHHHHHhCC--CCC--CeEECCChhHHHH
Q psy12303         70 TGHPMFMNQLSCGLDVVSMAGEWLIA-TANT-NMFTYEIAPVFILMETVVLEKMRQIIGW--QGG--DSILAPGGSISNL  143 (480)
Q Consensus        70 ~~~p~~~~~~~~~~~~~~~~~~~l~~-~~~~-~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~--~~~~t~ggt~a~~  143 (480)
                      .+...|++....++.++.+. +.+.. .+.. ....|....+..++.+++.+++....+.  +++  ++++|+|||+|+.
T Consensus        31 l~~g~y~d~~~~~~~~~~v~-~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~  109 (397)
T 3fsl_A           31 LSIGLYYNEDGIIPQLQAVA-EAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALK  109 (397)
T ss_dssp             CSSCCCCCTTSCCCCCHHHH-HHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHH
T ss_pred             EeeeEEECCCCCccCcHHHH-HHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHH
Confidence            34444544433444445555 44444 4443 3344554555667777766666544332  455  7899999999999


Q ss_pred             HHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeC--CCCCCCCHHHHHHHHHHHHHC
Q psy12303        144 YAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPS--DKRGRLIPSELERLVLERKAK  221 (480)
Q Consensus       144 ~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~  221 (480)
                      .++......            .||+ .|+++.++|.++...++..|.   +++.+|.  ++++.+|+++|++++++.   
T Consensus       110 ~~~~~~~~~------------~~gd-~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~---  170 (397)
T 3fsl_A          110 VGADFLKRY------------FPES-GVWVSDPTWENHVAIFAGAGF---EVSTYPWYDEATNGVRFNDLLATLKTL---  170 (397)
T ss_dssp             HHHHHHHHH------------CTTC-CEEEESSCCHHHHHHHHHTTC---CEEEECCEETTTTEECHHHHHHHHTTC---
T ss_pred             HHHHHHHhc------------CCCC-eEEEeCCCchhHHHHHHHcCC---ceEEEeeeeccCCcCcHHHHHHHHHhC---
Confidence            996543221            0445 788888999999999999988   8889998  457889999999999742   


Q ss_pred             CCccEEEEeccCCCccccccC---hHHHHHHHHHcCcEEEeeccccccccccccccCc--ccCCCCCCccceeCccccCC
Q psy12303        222 GDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHP--RLTGIERADSVTWNPHKLMG  296 (480)
Q Consensus       222 ~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~~D~~~~s~hK~~~  296 (480)
                      ..+++++++++++||||.+.+   +++|.++|++||+++|+|++|+.+.........+  .+.+.....+++.|++|.++
T Consensus       171 ~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  250 (397)
T 3fsl_A          171 QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFS  250 (397)
T ss_dssp             CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT
T ss_pred             CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEeccccccc
Confidence            123789999999999999954   6699999999999999999998876531100000  11112244577789999998


Q ss_pred             C-cccceEEEE--eCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhc--------HHHHH
Q psy12303        297 T-LLQCSTIHF--KQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG--------DEGFE  365 (480)
Q Consensus       297 ~-p~~~g~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g--------~~~~~  365 (480)
                      . +.++|++++  .+...+.........+.....            .  +   ...+...+....+.        .+.++
T Consensus       251 ~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~--~---~~~~~~~~~~~~l~~~~l~~~~~~~~~  313 (397)
T 3fsl_A          251 LYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNY------------S--S---PPNFGAQVVAAVLNDEALKASWLKEVE  313 (397)
T ss_dssp             CGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTT------------S--S---CCSHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             CcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhcc------------C--C---CCHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            4 466888875  343433322111000000000            0  0   11222222222221        45577


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCC---CeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEee
Q psy12303        366 KQIDRLMELAEYMVKKIKSMPD---KFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGY  442 (480)
Q Consensus       366 ~~~~~~~~l~~~l~~~l~~~~~---g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~  442 (480)
                      ++.++..++++++.+.|++ .+   ++++. .|..+.++|...    .              ...+...+.+.| +++.+
T Consensus       314 ~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~-~~~~~~~~~~~~----~--------------~~~~~~~l~~~g-i~v~~  372 (397)
T 3fsl_A          314 EMRTRILAMRQELVKVLST-EMPERNFDYL-LNQRGMFSYTGL----S--------------AAQVDRLREEFG-VYLIA  372 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HCTTSCCTHH-HHCCSSEEECCC----C--------------HHHHHHHHHTTC-EECCT
T ss_pred             HHHHHHHHHHHHHHHHHHh-cCCCCCceee-cCCceEEEecCC----C--------------HHHHHHHHHhCC-EEECC
Confidence            8888899999999999998 54   56653 455555555211    1              123445566677 44433


Q ss_pred             eeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        443 QPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       443 ~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                          +  +  |+++. . .++++|++++++|+++
T Consensus       373 ----g--~--Ris~~-~-~~~~~i~~~~~~l~~~  396 (397)
T 3fsl_A          373 ----S--G--RMCVA-G-LNTANVQRVAKAFAAV  396 (397)
T ss_dssp             ----T--C--EEEGG-G-CCTTTHHHHHHHHHHH
T ss_pred             ----C--C--eEEEE-e-cCHhhHHHHHHHHHhh
Confidence                2  2  99853 2 3567799999999875

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.89  E-value=1.4e-21  Score=196.43  Aligned_cols=314  Identities=11%  Similarity=-0.013  Sum_probs=198.0

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhH
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV  181 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~  181 (480)
                      ..|...++..++++++.+++..-++.+++++++|+|+++++..+ .+...              ||+ .|+++.++|.++
T Consensus       105 ~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~~l~~--------------~gd-~Vl~~~p~~~~~  168 (449)
T 3qgu_A          105 SGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARI-QMMFG--------------SKP-TVAVQDPSYPVY  168 (449)
T ss_dssp             CCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHHHC--------------SSS-CEEEEESCCTHH
T ss_pred             CCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-HHHhC--------------CCC-EEEEcCCCChhH
Confidence            34544445566776666665511144667899999999998877 44433              445 788889999999


Q ss_pred             HHHHHHcCCCC-------CCeEEeeCCCC--CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHH
Q psy12303        182 RSCAAVCGLGT-------DNCVEVPSDKR--GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADI  249 (480)
Q Consensus       182 ~~~~~~~g~~~-------~~v~~v~~~~~--~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i  249 (480)
                      ..++...|..+       .+++.+|++++  ...|++++           .++++|++++++||+|.+.+   +++|+++
T Consensus       169 ~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l  237 (449)
T 3qgu_A          169 VDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----------KRTDIIFFCSPNNPTGAAATRAQLTELVNF  237 (449)
T ss_dssp             HHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----------CCCSEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred             HHHHHHcCCcccccccccceeEEEecccccCCcCChhHc-----------CCCCEEEEeCCCCCCCCcCCHHHHHHHHHH
Confidence            99999998720       01888998764  34444321           23789999999999999976   7888889


Q ss_pred             HHHcCcEEEeeccccccccccccc-cCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHh-hhcCCccccccc
Q psy12303        250 CQKYNMWLHVDAAWGGGLLLSKKY-RHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLIS-CNQMSAEYLFMQ  326 (480)
Q Consensus       250 ~~~~~~~l~vD~a~~~~~~~~~~~-~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~-~~~~~~~~l~~~  326 (480)
                      |++||+++++|++|+++....... ....+.+..+.++++.+++|+++ .+.++|+++.++. .+.. .......+....
T Consensus       238 ~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~  316 (449)
T 3qgu_A          238 ARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKA-LKYANGEPVHADWNRVM  316 (449)
T ss_dssp             HHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTT-CBCTTSCBHHHHHHHHH
T ss_pred             HHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHH-HHhhhhhhHHHHHHHHh
Confidence            999999999999999865432110 00011222355788899999997 5577899887543 2211 000000000000


Q ss_pred             ccccCcccCCCCccccCCCCCCchHHHHHHHHh---cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEE
Q psy12303        327 DKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK---GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFW  403 (480)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~---g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~  403 (480)
                      ..              .......+...++...+   +.+.++++.++..++++++.+.|++ . |+++.. +..+.+++.
T Consensus       317 ~~--------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~-~~~~~~~~~  379 (449)
T 3qgu_A          317 TT--------------CFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTE-M-GFSVYG-GDDAPYIWV  379 (449)
T ss_dssp             HH--------------SCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCEEE-SSSSSEEEE
T ss_pred             hc--------------ccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCeeeC-CCCeeEEEE
Confidence            00              00002333444444444   3356788889999999999999999 4 888764 443444443


Q ss_pred             eecCccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeCC--cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        404 YLPTRVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPLND--LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       404 ~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~~--~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ..+ ...              ..++.+.|.++ |+ ++.++...+  ..+++|+++   ..++++|++++++|++++++
T Consensus       380 ~~~-~~~--------------~~~~~~~l~~~~gI-~v~pg~~f~~~~~~~iRis~---~~~~e~i~~~l~~l~~~~~~  439 (449)
T 3qgu_A          380 GFP-GKP--------------SWDVFAEILERCNI-VTTPGSGYGPAGEGFVRASA---FGSRENILEAVRRFKEAYGK  439 (449)
T ss_dssp             ECT-TSC--------------HHHHHHHHHHHHCE-ECEEGGGGCGGGTTEEEEEC---CSCHHHHHHHHHHHHHHHC-
T ss_pred             ECC-CCC--------------HHHHHHHHHHHCCE-EEecchHhCCCCCCeEEEEe---cCCHHHHHHHHHHHHHHHHh
Confidence            333 111              23566677766 64 444332221  157999993   34899999999999998753

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.89  E-value=3.3e-22  Score=197.80  Aligned_cols=221  Identities=14%  Similarity=0.114  Sum_probs=163.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH----
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV----  187 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~----  187 (480)
                      ....++++++++++|.+  .+++++||++|+..++.++..              ||+ .|+++...|.+....+..    
T Consensus        81 p~~~~l~~~la~~~g~~--~~~~~~sG~~Ai~~al~~l~~--------------~Gd-~Vi~~~~~y~~~~~~~~~~~~~  143 (414)
T 3ndn_A           81 PTVSVFEERLRLIEGAP--AAFATASGMAAVFTSLGALLG--------------AGD-RLVAARSLFGSCFVVCSEILPR  143 (414)
T ss_dssp             HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTCC--------------TTC-EEEEESCCCHHHHHHHHTHHHH
T ss_pred             hHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHhC--------------CCC-EEEEcCCccchHHHHHHHHHHH
Confidence            34456677799999975  489999999999888876643              556 788888899887776654    


Q ss_pred             cCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccc
Q psy12303        188 CGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGL  267 (480)
Q Consensus       188 ~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~  267 (480)
                      +|.   +++++|.+     |+++|+++++++      +++|++++++|++|.+.|+++|.++|+++|+++++|++|+.+.
T Consensus       144 ~g~---~~~~v~~~-----d~~~l~~ai~~~------t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~  209 (414)
T 3ndn_A          144 WGV---QTVFVDGD-----DLSQWERALSVP------TQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPL  209 (414)
T ss_dssp             TTC---EEEEECTT-----CHHHHHHHTSSC------CSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHH
T ss_pred             cCc---EEEEeCCC-----CHHHHHHhcCCC------CeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccc
Confidence            676   78888876     899999998764      8899999999999999999999999999999999999998665


Q ss_pred             cccccccCcccCCCCCCccceeCccccCCCcc--cceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCC
Q psy12303        268 LLSKKYRHPRLTGIERADSVTWNPHKLMGTLL--QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGR  345 (480)
Q Consensus       268 ~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~--~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r  345 (480)
                      ...+. ..       ++|+++.|++|+++++.  ..|+++.++........... ..                    .+.
T Consensus       210 ~~~~~-~~-------g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~-~~--------------------~g~  260 (414)
T 3ndn_A          210 LQQGF-PL-------GVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLM-RH--------------------TGP  260 (414)
T ss_dssp             HCCCG-GG-------TCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHH-HH--------------------HCC
T ss_pred             cCCch-hc-------CCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHH-HH--------------------cCC
Confidence            43322 33       68999999999998643  26777765432221211000 00                    011


Q ss_pred             CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC
Q psy12303        346 HNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP  395 (480)
Q Consensus       346 ~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~  395 (480)
                      ......+|+.++.  .+.+..+.++..++++++.+.|++ .|++..+..|
T Consensus       261 ~~~~~~a~~~~~~--l~~l~~r~~~~~~~a~~l~~~L~~-~p~v~~v~~p  307 (414)
T 3ndn_A          261 AMSAFNAWVLLKG--LETLAIRVQHSNASAQRIAEFLNG-HPSVRWVRYP  307 (414)
T ss_dssp             CCCHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHHHHT-CTTEEEEECT
T ss_pred             CCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhc-CCCEeEEECC
Confidence            1345566666654  455677788889999999999999 8888655433

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.89  E-value=1.9e-21  Score=192.16  Aligned_cols=285  Identities=12%  Similarity=0.114  Sum_probs=190.1

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHH----HcCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAA----VCGL  190 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~----~~g~  190 (480)
                      +++++.+++++|.+.  .++++||++|+..++.+...              ||+ .|+++...|.+....+.    ..|+
T Consensus        85 ~~le~~lA~l~g~~~--~i~~ssGt~Ai~~al~~l~~--------------~Gd-~Vi~~~~~y~~~~~~~~~~l~~~G~  147 (415)
T 2fq6_A           85 FSLQQAMCELEGGAG--CVLFPCGAAAVANSILAFIE--------------QGD-HVLMTNTAYEPSQDFCSKILSKLGV  147 (415)
T ss_dssp             HHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHTTCC--------------TTC-EEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred             HHHHHHHHHHhCCCe--EEEeCCHHHHHHHHHHHHhC--------------CCC-EEEEeCCCchHHHHHHHHHHHHcCc
Confidence            445566888899863  67789999999988876532              556 78888889988876653    2355


Q ss_pred             CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHH--cCcEEEeecccccccc
Q psy12303        191 GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQK--YNMWLHVDAAWGGGLL  268 (480)
Q Consensus       191 ~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~--~~~~l~vD~a~~~~~~  268 (480)
                         ++.+++.+     |+++|+++|+++      |++|++++++|++|.+.|+++|+++|++  +|+++|+|++|+.+..
T Consensus       148 ---~v~~v~~~-----d~~~le~ai~~~------tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~  213 (415)
T 2fq6_A          148 ---TTSWFDPL-----IGADIVKHLQPN------TKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVL  213 (415)
T ss_dssp             ---EEEEECTT-----CGGGGGGGCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTS
T ss_pred             ---EEEEECCC-----CHHHHHHhhccC------CcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCccccc
Confidence               77888765     889999998765      8999999999999999999999999999  9999999999987643


Q ss_pred             ccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC
Q psy12303        269 LSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH  346 (480)
Q Consensus       269 ~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~  346 (480)
                      ..+ ...       ++|+++.|+||+++++.+  .|+++.++ ..+......    ...                 .+..
T Consensus       214 ~~p-~~~-------g~Div~~S~sK~lg~~g~~~~G~l~~~~-~~~~~l~~~----~~~-----------------~G~~  263 (415)
T 2fq6_A          214 FKA-LDF-------GIDVSIQAATKYLVGHSDAMIGTAVCNA-RCWEQLREN----AYL-----------------MGQM  263 (415)
T ss_dssp             SCG-GGG-------TCSEEEEETTTTTTCSSSCCCEEEEECT-TTHHHHHHH----HHH-----------------TTCC
T ss_pred             CCc-ccc-------CCeEEEEeCccccCCCCCceEEEEEeCH-HHHHHHHHH----HHh-----------------cCCC
Confidence            222 133       789999999999997654  57777654 343332210    000                 0111


Q ss_pred             CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC-----------------ceeEEEEEeecCcc
Q psy12303        347 NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP-----------------EMVNVSFWYLPTRV  409 (480)
Q Consensus       347 ~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~-----------------~~~~v~f~~~~~~~  409 (480)
                      .....+|..++.  .+.+..+.++..+++..+.+.|++ .|.+.-+..|                 ..++++|.+... .
T Consensus       264 ~~~~~a~~~~~~--l~~l~~r~~~~~~n~~~l~~~L~~-~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~-~  339 (415)
T 2fq6_A          264 VDADTAYITSRG--LRTLGVRLRQHHESSLKVAEWLAE-HPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKK-L  339 (415)
T ss_dssp             CCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC-C
T ss_pred             CCHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCC-C
Confidence            223445555443  456677788888999999999999 7776533222                 245666654311 0


Q ss_pred             CCCchhhHHHHhhhhhHHHHHHHH------hccc---EEEe--e---ee-----eCCc-ccEEEEecccCCCCHHHHHHH
Q psy12303        410 RNMPHEKRLNILGEITPILKGRMM------QAGT---MMVG--Y---QP-----LNDL-PNFFRNIISSAAVTEGDIDFL  469 (480)
Q Consensus       410 ~~~~~~~~~~~l~~~~~~i~~~l~------~~g~---~~~~--~---~~-----~~~~-~~~~R~~~~~~~~t~~di~~~  469 (480)
                         +..+        ...+...+.      ..|.   +...  +   +.     ..+. .+.+|+| ....+++++|+.+
T Consensus       340 ---~~~~--------~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS-~G~e~~~d~i~~l  407 (415)
T 2fq6_A          340 ---NNEE--------LANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLH-IGLEDVDDLIADL  407 (415)
T ss_dssp             ---CHHH--------HHHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEE-CCSSCHHHHHHHH
T ss_pred             ---CHHH--------HHHHHHhCCcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEE-ecCCCHHHHHHHH
Confidence               0000        112222221      1121   1111  1   00     0121 4799999 8889999999999


Q ss_pred             HHHHHHh
Q psy12303        470 LTEMDRL  476 (480)
Q Consensus       470 ~~~l~~~  476 (480)
                      .++|+++
T Consensus       408 ~~al~~~  414 (415)
T 2fq6_A          408 DAGFARI  414 (415)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhh
Confidence            9999764

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.89  E-value=5.7e-22  Score=196.57  Aligned_cols=231  Identities=15%  Similarity=0.080  Sum_probs=164.4

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHH----HHHHcC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS----CAAVCG  189 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~----~~~~~g  189 (480)
                      ..++++++++++|.+.  .+++++|++|+..++.++..              ||+ .|+++...|.+...    .+...|
T Consensus        84 ~~~le~~lA~l~g~~~--~v~~~sG~~Ai~~al~al~~--------------~Gd-~Vi~~~~~y~~~~~~~~~~~~~~G  146 (430)
T 3ri6_A           84 VEDLEQRLKNLTGALG--VLALGSGMAAISTAILTLAR--------------AGD-SVVTTDRLFGHTLSLFQKTLPSFG  146 (430)
T ss_dssp             HHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHCC--------------TTC-EEEEETTCCHHHHHHHHTHHHHTT
T ss_pred             HHHHHHHHHHHHCCCc--EEEECCHHHHHHHHHHHHhC--------------CCC-EEEEcCCCchhHHHHHHHHHHHcC
Confidence            3445566888999865  77888899999999887743              556 78888899988877    556677


Q ss_pred             CCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccc
Q psy12303        190 LGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLL  269 (480)
Q Consensus       190 ~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~  269 (480)
                      +   +++.++.+     |+++|+++++++      +++|++++++|++|.+.|+++|.++|+++|+++|+|++|+.+...
T Consensus       147 ~---~~~~v~~~-----d~~~l~~ai~~~------t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~~  212 (430)
T 3ri6_A          147 I---EVRFVDVM-----DSLAVEHACDET------TKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLL  212 (430)
T ss_dssp             C---EEEEECTT-----CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTTC
T ss_pred             C---EEEEeCCC-----CHHHHHHhhCCC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccC
Confidence            7   78888876     899999999765      999999999999999999999999999999999999999977652


Q ss_pred             cccccCcccCCCCCCccceeCccccCCCcc--cceEEEEeCchhhHh---------hhcCCcccccccccccCcccCCCC
Q psy12303        270 SKKYRHPRLTGIERADSVTWNPHKLMGTLL--QCSTIHFKQDGLLIS---------CNQMSAEYLFMQDKLYDVRYDTGD  338 (480)
Q Consensus       270 ~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~--~~g~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~  338 (480)
                      . ....       ++|+++.|++|++++|.  -.|+++.+....+..         ... ...++.....         .
T Consensus       213 ~-~~~~-------g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g-~~~~i~~~~~---------~  274 (430)
T 3ri6_A          213 E-AKRL-------GVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAG-PMAFLYKARK---------E  274 (430)
T ss_dssp             C-GGGG-------TCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHG-GGHHHHHHHH---------T
T ss_pred             C-hHHc-------CCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhc-hhhHHHHHHH---------H
Confidence            2 2233       78999999999998752  345544433321100         000 0000000000         0


Q ss_pred             ccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc
Q psy12303        339 KVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE  396 (480)
Q Consensus       339 ~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~  396 (480)
                      +....+.......+|+.++  |.+.+..++++..+++.++.+.|++ .|+++.+..|.
T Consensus       275 ~~~~~g~~~~~~~a~l~l~--~l~~l~~r~~~~~~na~~la~~L~~-~p~v~~V~~P~  329 (430)
T 3ri6_A          275 VFQNLGPSLSPHNAYLQSL--GLETMALRIERSCQNAQELAHWLLS-IPQVKCVNHPS  329 (430)
T ss_dssp             HHHHHCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCEEEECTT
T ss_pred             HHHhcCCCCCHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHhC-CCCccEEECCC
Confidence            0000122235566676655  4677888889999999999999999 89988655444

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.89  E-value=4.8e-22  Score=199.44  Aligned_cols=307  Identities=12%  Similarity=0.031  Sum_probs=190.9

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchh-HHHH--H
Q psy12303        109 VFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS-VRSC--A  185 (480)
Q Consensus       109 ~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s-~~~~--~  185 (480)
                      ....+|...++++++++|.+. ..++++|||+||..++.++++              ||+ .|+++..+|.+ +...  .
T Consensus        88 ~~~~~e~~a~~~la~~~g~~~-~~v~~~sGs~a~~~a~~~~~~--------------~Gd-~Vl~~~~~~~~~~~~~~~~  151 (447)
T 3h7f_A           88 HVDVVENLARDRAKALFGAEF-ANVQPHSGAQANAAVLHALMS--------------PGE-RLLGLDLANGGHLTHGMRL  151 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHCC--------------TTC-EEEEECGGGTCCGGGTCTT
T ss_pred             HHHHHHHHHHHHHHHHcCCCc-eEEEeCCHHHHHHHHHHHhcC--------------CCC-EEEecCcccccccchhhhh
Confidence            334555544499999999976 233388899999999888754              556 78888878766 2111  1


Q ss_pred             HHcCCCCCCeEEeeCC-CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccc
Q psy12303        186 AVCGLGTDNCVEVPSD-KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWG  264 (480)
Q Consensus       186 ~~~g~~~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~  264 (480)
                      ...|... .++.++++ +++.+|+++|++++++.     ++++|+++.++++++.  ++++|.++|++||+++|+|++|+
T Consensus       152 ~~~g~~~-~~~~~~~~~~~~~~d~~~l~~~i~~~-----~~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~  223 (447)
T 3h7f_A          152 NFSGKLY-ENGFYGVDPATHLIDMDAVRATALEF-----RPKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHF  223 (447)
T ss_dssp             SHHHHSS-EEEEECCCTTTCSCCHHHHHHHHHHH-----CCSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTT
T ss_pred             hhcCCee-EEEEcCcCcccCCcCHHHHHHHHHhc-----CCeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCch
Confidence            1222211 44566666 46789999999999754     1678888888887766  99999999999999999999987


Q ss_pred             ccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCC
Q psy12303        265 GGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCG  344 (480)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  344 (480)
                      .+......... .   ++.+|+++.++||++++|.+ |+++.++ ++.........++..+                  +
T Consensus       224 ~g~~~~g~~~~-~---~~~~di~~~s~sK~l~G~~g-G~i~~~~-~~~~~l~~~~~~~~~~------------------~  279 (447)
T 3h7f_A          224 AGLVAAGLHPS-P---VPHADVVSTTVHKTLGGGRS-GLIVGKQ-QYAKAINSAVFPGQQG------------------G  279 (447)
T ss_dssp             HHHHHTTSSCC-S---TTTCSEEEEESSGGGCCCSC-EEEEECG-GGHHHHHHHHTTTTCS------------------S
T ss_pred             hhhhcCCCCCC-C---CCCCcEEEecCCcCCCCCCe-EEEEECH-HHHHHHhhhcCCcccC------------------C
Confidence            65443222111 1   13679999999999987655 7776543 4433322111111100                  0


Q ss_pred             CC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC----CCeEEecCC-ceeEEEEEeecCccCCCchhhHH
Q psy12303        345 RH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP----DKFYLILEP-EMVNVSFWYLPTRVRNMPHEKRL  418 (480)
Q Consensus       345 r~-~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~----~g~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~~  418 (480)
                      .. ....++.+++.....++++++.++..++++++.+.|.+ .    +|++++..+ ....+.+.+.+....        
T Consensus       280 ~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------  350 (447)
T 3h7f_A          280 PLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMA-PDVAKAGVSVVSGGTDVHLVLVDLRDSPLD--------  350 (447)
T ss_dssp             CCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTS-HHHHHTTCEEGGGSCSSSEEEEECTTSSCC--------
T ss_pred             ccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHh-ccccCCCeEEecCCCCCCEEEEEcCCCCCC--------
Confidence            00 11233444444444456788889999999999999988 4    489887533 333333333222111        


Q ss_pred             HHhhhhhHHHHHHHHhcccEEEe---ee--eeCCcccEEEEeccc---CCCCHHHHHHHHHHHHHhhc
Q psy12303        419 NILGEITPILKGRMMQAGTMMVG---YQ--PLNDLPNFFRNIISS---AAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       419 ~~l~~~~~~i~~~l~~~g~~~~~---~~--~~~~~~~~~R~~~~~---~~~t~~di~~~~~~l~~~~~  478 (480)
                            ...+.+.|.+.|+++..   +.  .......++|++...   ...+++||+++++.|+++++
T Consensus       351 ------~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~  412 (447)
T 3h7f_A          351 ------GQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALA  412 (447)
T ss_dssp             ------HHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence                  12344555555744320   11  001114689998322   23689999999999998764

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.89  E-value=9.1e-22  Score=192.92  Aligned_cols=289  Identities=12%  Similarity=0.084  Sum_probs=182.7

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCC-chhHHHHHHHcCCC-
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQC-HYSVRSCAAVCGLG-  191 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~-h~s~~~~~~~~g~~-  191 (480)
                      ..++++++++++|.+ .++++|+|||+|+..++.+++..     ...+   .||+..|+++..+ |.+...+....+.. 
T Consensus        72 ~~~l~~~la~~~g~~-~~v~~~~g~t~a~~~~~~~~~~~-----~~~~---~~g~~~vl~~~~~y~~~~~~~~~~~~~~~  142 (375)
T 2eh6_A           72 QEELAHKLVKHFWTE-GKVFFANSGTESVEAAIKLARKY-----WRDK---GKNKWKFISFENSFHGRTYGSLSATGQPK  142 (375)
T ss_dssp             HHHHHHHHHHTSSSC-EEEEEESSHHHHHHHHHHHHHHH-----HHHT---TCCCCEEEEEBTCCCCSSHHHHHHCBCGG
T ss_pred             HHHHHHHHHhhcCCC-CeEEEeCchHHHHHHHHHHHHHH-----hccC---CCCCCEEEEECCCcCCCchhhhhhcCCcc
Confidence            346678899999984 57999999999999999875321     0000   1442256666665 54444444433321 


Q ss_pred             ----C----CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEEEe
Q psy12303        192 ----T----DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWLHV  259 (480)
Q Consensus       192 ----~----~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l~v  259 (480)
                          .    ..+..+|.     .|+++|+++++++      +++|++++++|++|.+.|    +++|.++|++||+++|+
T Consensus       143 ~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~------~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~  211 (375)
T 2eh6_A          143 FHKGFEPLVPGFSYAKL-----NDIDSVYKLLDEE------TAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLII  211 (375)
T ss_dssp             GTTTTCSCCSSEEEECT-----TCHHHHHTTCCTT------EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEE
T ss_pred             ccCCCCCCCCCceeCCC-----chHHHHHHHhcCC------eEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEE
Confidence                0    01444443     4899999988753      899999999999999987    99999999999999999


Q ss_pred             eccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCc
Q psy12303        260 DAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDK  339 (480)
Q Consensus       260 D~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  339 (480)
                      |++|+++......... ...+. .+|++++|  |++++|.++|++++++ +..+....   ... .           ..+
T Consensus       212 De~~~~~~~~~~~~~~-~~~~~-~~d~~s~S--K~~~~g~~~G~~~~~~-~~~~~~~~---~~~-~-----------~~~  271 (375)
T 2eh6_A          212 DEVQTGIGRTGEFYAY-QHFNL-KPDVIALA--KGLGGGVPIGAILARE-EVAQSFTP---GSH-G-----------STF  271 (375)
T ss_dssp             ECTTTTTTTTSSSSGG-GGGTC-CCSEEEEC--GGGGTTSCCEEEEEEH-HHHTTCCT---TSC-C-----------CSS
T ss_pred             eccccCCCCCCcchhh-hhcCC-CCCEEEEc--ccccCCCCeEEEEEcH-HHHhhhcC---CCC-C-----------CCC
Confidence            9999953221111111 11122 47888766  8888888899999865 33332211   000 0           000


Q ss_pred             cccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHH
Q psy12303        340 VIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLN  419 (480)
Q Consensus       340 ~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~  419 (480)
                            ....+...+++..+.  .+.+..++..++++++.+.|++ .+...+  ++....+.+.+ +..           
T Consensus       272 ------~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~l~~~L~~-~~~~~~--~~~g~~~~~~~-~~~-----------  328 (375)
T 2eh6_A          272 ------GGNPLACRAGTVVVD--EVEKLLPHVREVGNYFKEKLKE-LGKGKV--KGRGLMLGLEL-ERE-----------  328 (375)
T ss_dssp             ------TTCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-TTSSEE--EEETTEEEEEC-SSC-----------
T ss_pred             ------CCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HhcCCc--eEEEEEEEEEE-cCc-----------
Confidence                  012333333333221  1226778888999999999998 654222  23333444432 211           


Q ss_pred             HhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        420 ILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       420 ~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                           ..++.+.|.+.|+.+ .+.   + .+++|++ ++..++++|+++++++|+++
T Consensus       329 -----~~~~~~~l~~~gi~~-~~~---~-~~~iRi~-~~~~~~~~~i~~~~~~l~~~  374 (375)
T 2eh6_A          329 -----CKDYVLKALEKGLLI-NCT---A-GKVLRFL-PPLIIQKEHIDRAISVLREI  374 (375)
T ss_dssp             -----CHHHHHHHHHTTEEC-EEE---T-TTEEEEC-CCTTCCHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHCCCEE-ecC---C-CCEEEEE-CCCCCCHHHHHHHHHHHHHh
Confidence                 135667777777443 332   2 4799999 77789999999999999876

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.89  E-value=9.3e-22  Score=191.00  Aligned_cols=281  Identities=9%  Similarity=0.016  Sum_probs=194.1

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCe
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNC  195 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v  195 (480)
                      ++++++++++|.++.++++|+|+|+|+..++.++.                |+ .|+++.++|.++...++..|.   ++
T Consensus        54 ~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~----------------gd-~Vi~~~p~~~~~~~~~~~~g~---~~  113 (350)
T 3fkd_A           54 TLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR----------------GS-RSLIAIPSFAEYEDACRMYEH---EV  113 (350)
T ss_dssp             HHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT----------------TC-EEEEEESCCHHHHHHHHHTTC---EE
T ss_pred             HHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC----------------CC-EEEEeCCCcHHHHHHHHHcCC---eE
Confidence            57788999999988899999999999998887663                14 788888999999999999998   88


Q ss_pred             EEeeC-CCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcC-cEEEeeccccccccccccc
Q psy12303        196 VEVPS-DKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYN-MWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       196 ~~v~~-~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~-~~l~vD~a~~~~~~~~~~~  273 (480)
                      +.+|. +++..+++        +      ++++|++++++||+|.+.|++++.++++.++ .++++|++|+.+.......
T Consensus       114 ~~v~~~~~~~~~~~--------~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~  179 (350)
T 3fkd_A          114 CFYPSNEDIGEADF--------S------NMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIR  179 (350)
T ss_dssp             EEEETTSCGGGSCC--------T------TCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCC
T ss_pred             EEEecCCccccCcc--------C------CCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchh
Confidence            99998 65444554        2      2789999999999999999999999999886 7999999998765422211


Q ss_pred             cCcccCCCCCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHH
Q psy12303        274 RHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL  352 (480)
Q Consensus       274 ~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~  352 (480)
                      .. ... ..+.++++.|++|+++ .+.++|++++ ++++..........+                       ....+..
T Consensus       180 ~~-~~~-~~~~~i~~~S~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~-----------------------~~~~~~~  233 (350)
T 3fkd_A          180 PA-DIK-GRKNLVMVYSFSHAYGIPGLRIGYIVA-NKDFMKRVAAFSTPW-----------------------AVNALAI  233 (350)
T ss_dssp             GG-GGT-TCSSEEEEEESHHHHSCGGGCCEEEEC-CHHHHHHHHTTCCTT-----------------------CSCHHHH
T ss_pred             hH-Hhh-cCCCEEEEecCchhccCcchheEeEEe-CHHHHHHHHHhCCCC-----------------------CCCHHHH
Confidence            11 111 1245578889999998 4467898887 555555443222111                       0123333


Q ss_pred             HHHHHHhcH-HHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHH
Q psy12303        353 WLQWRAKGD-EGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGR  431 (480)
Q Consensus       353 ~~~l~~~g~-~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~  431 (480)
                      +++...+.. +.+.+.+++..++++++.+.|++ +|++++. ++....+.+.+ +.. .              ..++.+.
T Consensus       234 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~-~~~~~~~~~~~-~~~-~--------------~~~l~~~  295 (350)
T 3fkd_A          234 EAAKFILIHPAQFTLPIRKWQRNTVDFITALNR-LDGVEVH-PSGTTFFLLRL-KKG-T--------------AAELKKY  295 (350)
T ss_dssp             HHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHH-STTEEEC-CCSSSEEEEEE-SSS-C--------------HHHHHHH
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc-CCCcEEC-CCCCcEEEEEC-CCC-C--------------HHHHHHH
Confidence            433333311 11333444555889999999999 8899984 45544444433 221 1              2456788


Q ss_pred             HHh-cccEEEeeeee-CCc-ccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        432 MMQ-AGTMMVGYQPL-NDL-PNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       432 l~~-~g~~~~~~~~~-~~~-~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      |.+ .|+. +.++.. .+. .+++|+++ .   +++++++++++|+++.++
T Consensus       296 L~~~~gi~-v~~g~~f~~~~~~~iRis~-~---~~~~~~~l~~al~~~~~~  341 (350)
T 3fkd_A          296 MLEEYNML-IRDASNFRGLDESYVRITT-Q---RPAQNQLFIKALETFLEK  341 (350)
T ss_dssp             HHHTTCEE-CEECTTSTTCCTTEEEEEC-C---CHHHHHHHHHHHHHHHTC
T ss_pred             HHHHCCEE-EEeCccCCCCCCCEEEEEc-C---CHHHHHHHHHHHHHHHHH
Confidence            888 7744 443322 111 57999994 3   789999999999988754

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.89  E-value=6.4e-22  Score=197.85  Aligned_cols=305  Identities=10%  Similarity=-0.021  Sum_probs=198.0

Q ss_pred             chhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH
Q psy12303        103 TYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR  182 (480)
Q Consensus       103 ~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~  182 (480)
                      .|.......++++++.+|+.+.++.++.++++|+|+++++.. +..+.+              ||+ .|+++.+.|+++.
T Consensus        93 ~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~-l~~l~~--------------~gd-~Vl~~~p~y~~~~  156 (432)
T 3ei9_A           93 GYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISR-LQVMFG--------------SNV-TIAVQDPSYPAYV  156 (432)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHH-HHHHHC--------------TTC-CEEEEESCCTHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHH-HHHHcC--------------CCC-EEEEeCCCCHHHH
Confidence            444445567888888888776567777899999999998875 444432              445 7888899999999


Q ss_pred             HHHHHcCCCC---------CCeEEeeCCCC--CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHH
Q psy12303        183 SCAAVCGLGT---------DNCVEVPSDKR--GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIAD  248 (480)
Q Consensus       183 ~~~~~~g~~~---------~~v~~v~~~~~--~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~  248 (480)
                      .++...|...         .+++.+|++.+  ...|++.           ..++++|++++++||+|.+.+   +++|++
T Consensus       157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~  225 (432)
T 3ei9_A          157 DSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----------VGRTDIIFFCSPNNPTGAAATREQLTQLVE  225 (432)
T ss_dssp             HHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----------CCCCSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----------CCCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            9999888532         26788888753  3444322           123788999999999999865   677777


Q ss_pred             HHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCC-CcccceEEEEeCchh-------hHhhhcCCc
Q psy12303        249 ICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHFKQDGL-------LISCNQMSA  320 (480)
Q Consensus       249 i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~-------~~~~~~~~~  320 (480)
                      +|++||+++++|++|+.+...........+.+..+.++++.|++|+++ .+.++|++++++...       ........ 
T Consensus       226 la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-  304 (432)
T 3ei9_A          226 FAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRII-  304 (432)
T ss_dssp             HHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHH-
T ss_pred             HHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHh-
Confidence            899999999999999986543211111012222345688889999997 556789988765431       22111000 


Q ss_pred             ccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh---cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCce
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK---GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEM  397 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~---g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~  397 (480)
                      ...                    ......+...+++..+   +.+.++++.++..++++++.+.|++ . |+++..+...
T Consensus       305 ~~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~  362 (432)
T 3ei9_A          305 CTC--------------------FNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTS-L-GYDVYGGKNA  362 (432)
T ss_dssp             HHS--------------------CCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCEEECSSS
T ss_pred             ccc--------------------cCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH-C-CceecCCCcc
Confidence            000                    0001233444444433   3456788889999999999999999 5 8887643333


Q ss_pred             eEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeCC--cccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        398 VNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPLND--LPNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       398 ~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~~--~~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                      . +++...+ ..   +           ..++...+.++ |+ ++.++...+  ..+++|+++   .+++++|++++++|+
T Consensus       363 ~-~~~~~~~-~~---~-----------~~~~~~~ll~~~gv-~v~~g~~f~~~~~~~iRis~---~~~~e~l~~~l~rl~  422 (432)
T 3ei9_A          363 P-YVWVHFP-NQ---S-----------SWDVFAEILEKTHV-VTTPGSGFGPGGEGFVRVSA---FGHRENILEACRRFK  422 (432)
T ss_dssp             S-EEEEECT-TS---C-----------HHHHHHHHHHHHCE-ECEEGGGGCGGGTTEEEEEC---CSCHHHHHHHHHHHH
T ss_pred             e-EEEEECC-CC---C-----------HHHHHHHHHHHCCE-EEeCchHhCCCCCCEEEEEe---cCCHHHHHHHHHHHH
Confidence            3 3332222 11   1           23455666655 64 444332221  157999993   458999999999998


Q ss_pred             Hhh
Q psy12303        475 RLG  477 (480)
Q Consensus       475 ~~~  477 (480)
                      +.-
T Consensus       423 ~~~  425 (432)
T 3ei9_A          423 QLY  425 (432)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            754

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.89  E-value=6.2e-21  Score=188.37  Aligned_cols=301  Identities=13%  Similarity=0.028  Sum_probs=185.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      .....++++++++++|.  .++++|+|||+|+..++++++...    ...|.   +++.+|+.+...|.+...+....+.
T Consensus        77 ~~~~~~l~~~la~~~~~--~~v~~~~gg~ea~~~al~~~~~~~----~~~g~---~~~~vi~~~~~yhg~~~~~~~~~~~  147 (395)
T 3nx3_A           77 NENIAAAAKNLAKASAL--ERVFFTNSGTESIEGAMKTARKYA----FNKGV---KGGQFIAFKHSFHGRTLGALSLTAN  147 (395)
T ss_dssp             CHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHHHH----HHTTC---TTCEEEEETTCCCCSSHHHHTTCCC
T ss_pred             CHHHHHHHHHHHHhcCC--CeEEEeCCHHHHHHHHHHHHHHHh----hccCC---CCCEEEEEcCCcCCCCHHHHhhcCC
Confidence            45667788889999984  469999999999999999887531    11221   2353555555555554444333221


Q ss_pred             ---------CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEE
Q psy12303        191 ---------GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWL  257 (480)
Q Consensus       191 ---------~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l  257 (480)
                               -...+..+|.+     |+++|++++++.      +++|+++..++++|.+.+    +++|.++|++||+++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~------~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~l  216 (395)
T 3nx3_A          148 EKYQKPFKPLISGVKFAKYN-----DISSVEKLVNEK------TCAIILESVQGEGGINPANKDFYKALRKLCDEKDILL  216 (395)
T ss_dssp             HHHHGGGCSCCSCEEEECTT-----CHHHHHTTCCTT------EEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEE
T ss_pred             cccccccCCCCCCcEEeCCC-----CHHHHHHhccCC------eEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence                     01256666654     799999998744      889999999999999977    999999999999999


Q ss_pred             EeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchh-hHhhhcCCcccccccccccCcccCC
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGL-LISCNQMSAEYLFMQDKLYDVRYDT  336 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~  336 (480)
                      |+|++|+++......... ...++ ..|++++  .|.++++.++|+++.++ +. .+.....    ...           
T Consensus       217 i~Dev~~~~g~~g~~~~~-~~~~~-~~d~~t~--sK~~~~G~~~G~~~~~~-~~~~~~~~~~----~~~-----------  276 (395)
T 3nx3_A          217 IADEIQCGMGRSGKFFAY-EHAQI-LPDIMTS--AKALGCGLSVGAFVINQ-KVASNSLEAG----DHG-----------  276 (395)
T ss_dssp             EEECTTTTTTTTSSSSGG-GGGTC-CCSEEEE--CGGGTTTSCCEEEEECH-HHHHHHSCTT----CCS-----------
T ss_pred             EEEecccCCCcCCcchhH-HhcCC-CCCEEEe--cccccCCCceEEEEEch-hhhhhhcCCc----ccC-----------
Confidence            999999865332221111 12233 4677764  58888778899888754 34 3332111    000           


Q ss_pred             CCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHh----cCCCCeEEecCCceeEEEEEeecCccCCC
Q psy12303        337 GDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIK----SMPDKFYLILEPEMVNVSFWYLPTRVRNM  412 (480)
Q Consensus       337 ~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~----~~~~g~~~~~~~~~~~v~f~~~~~~~~~~  412 (480)
                            .+.....+...+++..+..-.-++..++..++.+++++.|.    + ++.+..+ ++....+.+.+.... .  
T Consensus       277 ------~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~-~~~g~~~~~~~~~~~-~--  345 (395)
T 3nx3_A          277 ------STYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINE-FDFCKKR-KGLGFMQGLSLDKSV-K--  345 (395)
T ss_dssp             ------SCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH-CTTEEEE-EEETTEEEEEECTTS-C--
T ss_pred             ------CCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEE-EeEEEEEEEEeCCcc-h--
Confidence                  00012333333333332111112344455555555555444    4 4555443 233344444432110 0  


Q ss_pred             chhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        413 PHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       413 ~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                                  ..++.+.|.++|+++...    + .+++|++ ++..+|++|+++++++|+++++++
T Consensus       346 ------------~~~~~~~l~~~Gi~v~~~----~-~~~iRi~-~~~~~t~e~i~~~l~~l~~~l~~~  395 (395)
T 3nx3_A          346 ------------VAKVIQKCQENALLLISC----G-ENDLRFL-PPLILQKEHIDEMSEKLRKALKSF  395 (395)
T ss_dssp             ------------HHHHHHHHHHTTEECEEE----T-TTEEEEC-CCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             ------------HHHHHHHHHHCCCEEecC----C-CCEEEEE-CCCCCCHHHHHHHHHHHHHHHHhC
Confidence                        245677888888544332    2 5799999 889999999999999999987653

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.89  E-value=7.3e-21  Score=189.30  Aligned_cols=299  Identities=10%  Similarity=0.053  Sum_probs=190.3

Q ss_pred             HHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        112 LMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      ....++++.+++++|.+ ++++++|+||++|+..++++++..             +|+.+|+.....|.+...++...|.
T Consensus        86 ~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~-------------~~~~vi~~~p~yh~~~~~~~~~~~~  152 (419)
T 2eo5_A           86 IPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNT-------------GRKYIIAFLGGFHGRTFGSISLTAS  152 (419)
T ss_dssp             HHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTT-------------SCCEEEEETTCCCCSSHHHHHHCCS
T ss_pred             HHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHh-------------hCCcEEEECCCcCCCCHhhHhhcCC
Confidence            44566778899999987 668999999999999999988652             2353555555667666666654332


Q ss_pred             C----------CCCeEEeeCCCCCC----------------CCHHHHH-HHHHHHHHCCCccEEEEeccCCCccccccC-
Q psy12303        191 G----------TDNCVEVPSDKRGR----------------LIPSELE-RLVLERKAKGDIPFFVNCTSGTTVLGAFDP-  242 (480)
Q Consensus       191 ~----------~~~v~~v~~~~~~~----------------~d~~~L~-~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~-  242 (480)
                      .          ...++.+|.+++++                +|+++|+ +++++. ....++++|+++..++++|.+.+ 
T Consensus       153 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~-~~~~~~~~vi~~p~~~~tG~~~~~  231 (419)
T 2eo5_A          153 KAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNL-VPPEEVAGIFFEPIQGEGGYVIPP  231 (419)
T ss_dssp             CGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHT-CCGGGEEEEEECSSBTTTTSBCCC
T ss_pred             ccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhc-cCCCCEEEEEEeCccCCCCCccCC
Confidence            1          12578888865543                3688998 888742 00013677777766677898766 


Q ss_pred             ---hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcC
Q psy12303        243 ---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQM  318 (480)
Q Consensus       243 ---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~  318 (480)
                         +++|.++|++||+++|+|++|+++......... ...++ ..|+++  +.|.++++ .++|+++.++. .. .. . 
T Consensus       232 ~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~-~~~~~-~~d~~t--~sK~~~~G~~riG~~~~~~~-~~-~~-~-  303 (419)
T 2eo5_A          232 KNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAI-ENFNT-VPDVIT--LAKALGGGIMPIGATIFRKD-LD-FK-P-  303 (419)
T ss_dssp             TTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG-GGGTC-CCSEEE--ECGGGGTTTSCCEEEEEEGG-GC-CC---
T ss_pred             HHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhH-HhcCC-CCCEEE--ecccccCCccceEEEEEchH-hh-cC-C-
Confidence               999999999999999999999865432211111 11223 467665  56988877 88999997654 32 21 1 


Q ss_pred             CcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCcee
Q psy12303        319 SAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMV  398 (480)
Q Consensus       319 ~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~  398 (480)
                        ... .           +++      ....+...+++..+.  .+++..++..+++++|.+.|.+ +  +..+ ++...
T Consensus       304 --~~~-~-----------~t~------~~n~~~~~aa~aal~--~~~~~~~~~~~~~~~l~~~L~~-~--~~~~-~~~g~  357 (419)
T 2eo5_A          304 --GMH-S-----------NTF------GGNALACAIGSKVID--IVKDLLPHVNEIGKIFAEELQG-L--ADDV-RGIGL  357 (419)
T ss_dssp             -------------------CC------CCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTT-S--SSEE-EEETT
T ss_pred             --ccc-C-----------CCC------CCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-h--hhhe-EeeeE
Confidence              000 0           000      023333333333321  1223778888999999999988 5  2222 23333


Q ss_pred             EEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        399 NVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       399 ~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      .+.+.+.+..              .... +.+.|.+.|+++...    + .+++|++ ++..+|++++++++++|+++++
T Consensus       358 ~~~i~~~~~~--------------~~~~-~~~~l~~~Gv~v~~~----~-~~~lRis-~~~~~t~e~i~~~l~~l~~~l~  416 (419)
T 2eo5_A          358 AWGLEYNEKK--------------VRDR-IIGESFKRGLLLLPA----G-RSAIRVI-PPLVISEEEAKQGLDILKKVIK  416 (419)
T ss_dssp             EEEEECSCHH--------------HHHH-HHHHHHHTTEECEEE----T-TTEEEEC-CCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCc--------------cHHH-HHHHHHHCCCEEecC----C-CCEEEEE-CCCCCCHHHHHHHHHHHHHHHH
Confidence            4444321100              0123 667777888544332    2 4699998 8888999999999999998876


Q ss_pred             c
Q psy12303        479 D  479 (480)
Q Consensus       479 ~  479 (480)
                      +
T Consensus       417 ~  417 (419)
T 2eo5_A          417 V  417 (419)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.89  E-value=3.3e-21  Score=192.59  Aligned_cols=330  Identities=11%  Similarity=0.004  Sum_probs=183.8

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        110 FILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      ......+++++++++++.+..++++|+|||+|+..++++++...    ...|.   +++..|++.+..|+.....+..++
T Consensus        70 ~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~----~~~g~---~~~~~vi~~~~~yhg~~~~~~~~~  142 (430)
T 3i4j_A           70 SSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYH----VERGE---PGRFKVITRVPSYHGASLGSLAAS  142 (430)
T ss_dssp             EEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHH----HHTTC---TTCCEEEEETTC------------
T ss_pred             CCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHH----HhcCC---CCCcEEEEEeCCcCCCCccccccc
Confidence            34566778899999999877789999999999999999987531    12232   222255555555444333333222


Q ss_pred             CCC----------C--CeEEeeCCCC---CCCCHHHHHHHHHHHHHCCCccEEEEeccCCC-ccccccC----hHHHHHH
Q psy12303        190 LGT----------D--NCVEVPSDKR---GRLIPSELERLVLERKAKGDIPFFVNCTSGTT-VLGAFDP----IEEIADI  249 (480)
Q Consensus       190 ~~~----------~--~v~~v~~~~~---~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~-~~G~~~~----l~~I~~i  249 (480)
                      ...          .  .+..+|.+..   +..|+++|++++++..  ...+++|+++..++ ++|.+.+    +++|.++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l  220 (430)
T 3i4j_A          143 GMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREG--PETVAAFMAEPVVGASDAALAPAPGYYERVRDI  220 (430)
T ss_dssp             -------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHC--GGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHH
T ss_pred             CccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcC--CCCEEEEEEcCcccCcCCcccCCHHHHHHHHHH
Confidence            110          0  2344554432   2346789999997531  12377888888888 8998777    9999999


Q ss_pred             HHHcCcEEEeeccccccccccccccCcccC-CCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccc
Q psy12303        250 CQKYNMWLHVDAAWGGGLLLSKKYRHPRLT-GIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQD  327 (480)
Q Consensus       250 ~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  327 (480)
                      |++||+++|+|++|+++......... ... ++ ..|+++  +.|.++++ .++|+++. ++++.+........+.... 
T Consensus       221 ~~~~~~~li~DEv~~~~~~~g~~~~~-~~~~~~-~~di~t--~sK~l~~G~~r~G~~~~-~~~i~~~~~~~~~~~~~~~-  294 (430)
T 3i4j_A          221 CDEAGIIFIADEVMSGMGRCGSPLAL-SRWSGV-TPDIAV--LGKGLAAGYAPLAGLLA-APQVYETVMGGSGAFMHGF-  294 (430)
T ss_dssp             HHHHTCEEEEECTTTTTTTTSSSSGG-GGTTTC-CCSEEE--ECGGGTTTSSCCEEEEE-CHHHHHHHHHTTCBCCCCC-
T ss_pred             HHHcCCEEEEechhhCCCcccchhhh-hhhcCC-CCcEEE--EcccccCCccccEEEEE-CHHHHHHHhccCCcccccC-
Confidence            99999999999999876433222111 122 33 467776  45999876 77898886 4555444332111111110 


Q ss_pred             cccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH----HhcCCCCeEEecCCceeEEEEE
Q psy12303        328 KLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKK----IKSMPDKFYLILEPEMVNVSFW  403 (480)
Q Consensus       328 ~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~----l~~~~~g~~~~~~~~~~~v~f~  403 (480)
                                      +.....+...+++..+..-.-+++.++..++.+++++.    +.+ ++++..+ ++....+.+.
T Consensus       295 ----------------t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~-~~~g~~~~~~  356 (430)
T 3i4j_A          295 ----------------TYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQAR-FPQMMQV-RGTGLLLGVV  356 (430)
T ss_dssp             ----------------TTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH-CTTEEEE-EEETTEEEEE
T ss_pred             ----------------CCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHh-CCCeEEE-EEEEEEEEEE
Confidence                            00123333333333321100123344444444444444    445 5677654 3444455554


Q ss_pred             eecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeee-eeCC-cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        404 YLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQ-PLND-LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       404 ~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~-~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.......    ....  .....++.+.|.++|+++.... ...+ ..+++|++ ++...|++++++++++|++++++
T Consensus       357 ~~~~~~~~----~~~~--~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~-~~~~~t~e~i~~~l~~l~~~l~~  427 (430)
T 3i4j_A          357 LGDLATGQ----AFET--PGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLG-PPLSITAAEVDGLLALLAGALED  427 (430)
T ss_dssp             EC------------------CHHHHHHHHHHTTEECC-----------CEEEEC-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eccccccC----CCcc--HHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEE-CCCCCCHHHHHHHHHHHHHHHHH
Confidence            43111000    0000  0012467788888885543321 1111 15689999 88889999999999999988764

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.89  E-value=5.9e-21  Score=189.85  Aligned_cols=240  Identities=13%  Similarity=0.093  Sum_probs=164.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH----HH
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA----AV  187 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~----~~  187 (480)
                      ....++++.+++++|.+.  .+++++||+|+..++.++..              +|+ .|+++..+|.+....+    ..
T Consensus        58 ~~~~~l~~~la~~~g~~~--~v~~~sGt~A~~~~l~~~~~--------------~gd-~vi~~~~~~~~~~~~~~~~~~~  120 (421)
T 2ctz_A           58 PTVDVLEKRLAALEGGKA--ALATASGHAAQFLALTTLAQ--------------AGD-NIVSTPNLYGGTFNQFKVTLKR  120 (421)
T ss_dssp             HHHHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHCC--------------TTC-EEEECSCCCHHHHHHHHTHHHH
T ss_pred             hHHHHHHHHHHHHhCCCc--eEEecCHHHHHHHHHHHHhC--------------CCC-EEEEeCCCchHHHHHHHHHHHH
Confidence            334556677899999864  56777789999999987632              445 7889999999988776    56


Q ss_pred             cCCCCCCeEEe-eCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccc-cc
Q psy12303        188 CGLGTDNCVEV-PSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW-GG  265 (480)
Q Consensus       188 ~g~~~~~v~~v-~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~-~~  265 (480)
                      .|+   +++.+ +.+     |+++|+++++++      +++|++++++|++|.+.|+++|.++|++||+++|+|++| +.
T Consensus       121 ~g~---~~~~~~~~~-----d~~~l~~~i~~~------~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~  186 (421)
T 2ctz_A          121 LGI---EVRFTSREE-----RPEEFLALTDEK------TRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMG  186 (421)
T ss_dssp             TTC---EEEECCTTC-----CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGG
T ss_pred             cCC---EEEEECCCC-----CHHHHHHhhccC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccc
Confidence            676   77888 664     899999998764      899999999999999999999999999999999999999 76


Q ss_pred             cccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeC--chh----hHhhhcCCccccccccc-ccC-cc-cC
Q psy12303        266 GLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQ--DGL----LISCNQMSAEYLFMQDK-LYD-VR-YD  335 (480)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~--~~~----~~~~~~~~~~~l~~~~~-~~~-~~-~~  335 (480)
                      +. .......       ++|+++.|+||++++|. +.|++++.+  ..+    ..........+...... ... .. ..
T Consensus       187 g~-~~~~~~~-------~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~  258 (421)
T 2ctz_A          187 GY-LLRPLAW-------GAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIV  258 (421)
T ss_dssp             GT-SCCGGGG-------TCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHH
T ss_pred             cc-cCCcccc-------CCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHH
Confidence            53 2222223       68999999999999875 477777763  222    12221111111100000 000 00 00


Q ss_pred             -CC-CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        336 -TG-DKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       336 -~~-~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                       .. ......+.....+.+|+.+..  .+.+..++++..++++++.+.|++ +|+++.+.
T Consensus       259 ~~r~~~~~~~g~~~~~~~a~~~~~~--l~~l~~r~~~~~~~a~~l~~~L~~-~p~v~~v~  315 (421)
T 2ctz_A          259 KARVDGLRDQGQALGPFEAWVVLLG--METLSLRAERHVENTLHLAHWLLE-QPQVAWVN  315 (421)
T ss_dssp             HHHHTHHHHHCCCCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHT-CTTEEEEE
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHcC--cchHHHHHHHHHHhHHHHHHHHHh-CCCeeEEE
Confidence             00 000012233455666666554  445666778888999999999999 89998864

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.89  E-value=1.8e-20  Score=188.40  Aligned_cols=330  Identities=14%  Similarity=0.082  Sum_probs=192.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        110 FILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      ......+++++++++++.+.. ++||+|||+|+..++++++...    ...|..  +++.+|+.....|.....+....|
T Consensus        89 ~~~~~~~la~~l~~~~~~~~~-v~~~~ggseA~~~al~~~~~~~----~~~g~~--~~~~vi~~~~~yhg~~~~~~~~~~  161 (452)
T 3n5m_A           89 SHEPAIKLAEKLNEWLGGEYV-IFFSNSGSEANETAFKIARQYY----AQKGEP--HRYKFMSRYRGYHGNTMATMAATG  161 (452)
T ss_dssp             EEHHHHHHHHHHHHHHTSCEE-EEEESSHHHHHHHHHHHHHHHH----HTTTCT--TCCEEEEETTCCCCSSHHHHHSCC
T ss_pred             CCHHHHHHHHHHHHhCCCCce-EEEeCchHHHHHHHHHHHHHHH----HhcCCC--CCCEEEEECCCcCCCCHHHHhcCC
Confidence            456677889999999988665 9999999999999999998421    111110  224345455555555444444333


Q ss_pred             CC---------CCCeEEeeCCCCCCC---C---------HHHHHHHHHHHHHCCCccEEEEeccC-CCccccccC----h
Q psy12303        190 LG---------TDNCVEVPSDKRGRL---I---------PSELERLVLERKAKGDIPFFVNCTSG-TTVLGAFDP----I  243 (480)
Q Consensus       190 ~~---------~~~v~~v~~~~~~~~---d---------~~~L~~~i~~~~~~~~~~~~v~~~~~-~~~~G~~~~----l  243 (480)
                      ..         ...+..++.....+.   |         +++|++++++.  ...++++|+++.+ +| +|.+.|    +
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~~~vi~ep~~~n-~G~~~~~~~~l  238 (452)
T 3n5m_A          162 QAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWE--LSETIAAFIMEPIITG-GGILMAPQDYM  238 (452)
T ss_dssp             CGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHH--CGGGEEEEEECSSBTT-TTCBCCCTTHH
T ss_pred             chhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhc--CCCCEEEEEEccccCC-CCeeeCCHHHH
Confidence            21         013455554222111   2         89999999731  1223788899888 89 998876    9


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhc--CCc
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQ--MSA  320 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~--~~~  320 (480)
                      ++|.++|++||+++|+|++|.++......+.. ...++ ..|+++  +.|.++++ .+.|+++.+ +++.+....  ...
T Consensus       239 ~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~-~~~~~-~~di~t--~sK~l~~G~~~ig~~~~~-~~i~~~~~~~~~~~  313 (452)
T 3n5m_A          239 KAVHETCQKHGALLISDEVICGFGRTGKAFGF-MNYDV-KPDIIT--MAKGITSAYLPLSATAVK-REIYEAFKGKGEYE  313 (452)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG-GGTTC-CCSEEE--ECGGGGTTSSCCEEEEEE-HHHHGGGCSSSTTC
T ss_pred             HHHHHHHHHcCCEEEEecchhCCCcccccchh-hhcCC-CCCEEe--ecccccCCCcceEEEEEC-HHHHHHHhhccCCC
Confidence            99999999999999999999876433222222 22334 567777  45888877 788998874 444443321  001


Q ss_pred             ccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHh----cCCCCeEEecCCc
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIK----SMPDKFYLILEPE  396 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~----~~~~g~~~~~~~~  396 (480)
                      .++..                 .+.....+...+++..+..-.-+++.++..++.+++++.|.    + ++.+..+ ++.
T Consensus       314 ~~~~~-----------------~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~~-~~~  374 (452)
T 3n5m_A          314 FFRHI-----------------NTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGE-HPLVGDI-RGK  374 (452)
T ss_dssp             SCCCC-----------------CSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT-CTTEEEE-EES
T ss_pred             Ccccc-----------------CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-CCCeEEE-EEE
Confidence            11100                 01112334444444333211113344555555556555554    4 4555543 233


Q ss_pred             eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeee-CCcccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        397 MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPL-NDLPNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       397 ~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~-~~~~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                      ...+.+.+....... .  .+..   ....++.+.+.++|+++...... .+..+++|++ ++..+|+++|++++++|++
T Consensus       375 g~~~~i~~~~~~~~~-~--~~~~---~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~-~~~~~t~e~i~~~l~~l~~  447 (452)
T 3n5m_A          375 GLLVGIELVNDKETK-E--PIDN---DKIASVVNACKEKGLIIGRNGMTTAGYNNILTLA-PPLVISSEEIAFVIGTLKT  447 (452)
T ss_dssp             SSCEEEEEEEETTTT-E--ECCH---HHHHHHHHHHHHTTEECEECTTSSTTCCCEEEEC-CCTTCCHHHHHHHHHHHHH
T ss_pred             EEEEEEEEecCCccc-C--CCCH---HHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEE-CCCCCCHHHHHHHHHHHHH
Confidence            444444442211000 0  0000   01235778888898554433211 1114799999 8889999999999999999


Q ss_pred             hhccC
Q psy12303        476 LGHDL  480 (480)
Q Consensus       476 ~~~~l  480 (480)
                      +++++
T Consensus       448 ~l~~~  452 (452)
T 3n5m_A          448 AMERI  452 (452)
T ss_dssp             HHTTC
T ss_pred             HHHhC
Confidence            88764

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.88  E-value=2.1e-21  Score=191.85  Aligned_cols=282  Identities=12%  Similarity=0.045  Sum_probs=185.2

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH----HHcCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA----AVCGL  190 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~----~~~g~  190 (480)
                      .++++.+++++|.+  ..+++++|++|+..++. +..              ||+ .|+++...|.+....+    ...|+
T Consensus        70 ~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~-l~~--------------~gd-~Vl~~~~~y~~~~~~~~~~~~~~G~  131 (403)
T 3cog_A           70 NCLEKAVAALDGAK--YCLAFASGLAATVTITH-LLK--------------AGD-QIICMDDVYGGTNRYFRQVASEFGL  131 (403)
T ss_dssp             HHHHHHHHHHHTCS--EEEEESCHHHHHHHHHT-TSC--------------TTC-EEEEESSCCHHHHHHHHHTGGGGTC
T ss_pred             HHHHHHHHHHhCCC--cEEEECCHHHHHHHHHH-HhC--------------CCC-EEEEeCCCcchHHHHHHHHHHHcCC
Confidence            34556688888886  35556667888888876 422              445 7888888998866554    34565


Q ss_pred             CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcC-cEEEeeccccccccc
Q psy12303        191 GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYN-MWLHVDAAWGGGLLL  269 (480)
Q Consensus       191 ~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~-~~l~vD~a~~~~~~~  269 (480)
                         +++.++.+     |+++|+++++++      +++|++++++|++|.+.|+++|.++|+++| +++++|++|+.+...
T Consensus       132 ---~v~~v~~~-----d~~~l~~~i~~~------t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~  197 (403)
T 3cog_A          132 ---KISFVDCS-----KIKLLEAAITPE------TKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQ  197 (403)
T ss_dssp             ---EEEEECTT-----SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTC
T ss_pred             ---EEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccC
Confidence               78888876     899999988754      899999999999999999999999999999 999999999987642


Q ss_pred             cccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC
Q psy12303        270 SKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN  347 (480)
Q Consensus       270 ~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~  347 (480)
                      .+. ..       ++|+++.|+||++++|.+  +|+++.+++.+..........+                     +...
T Consensus       198 ~~~-~~-------~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~---------------------g~~~  248 (403)
T 3cog_A          198 RPL-AL-------GADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSL---------------------GAVP  248 (403)
T ss_dssp             CTT-TT-------TCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHH---------------------CCCC
T ss_pred             Ccc-cc-------CCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhc---------------------CCCC
Confidence            221 12       789999999999998765  5888876665544332110000                     0002


Q ss_pred             CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCe--------------EEecC---CceeEEEEEeecCccC
Q psy12303        348 DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKF--------------YLILE---PEMVNVSFWYLPTRVR  410 (480)
Q Consensus       348 ~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~--------------~~~~~---~~~~~v~f~~~~~~~~  410 (480)
                      ..+..|+.++.+  +.+..+.++..+++..+.+.+++ .+.+              ++..+   ...++++|.+....  
T Consensus       249 ~~~~~~~~~~~l--~~l~~r~~~~~~n~~~l~~~l~~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~--  323 (403)
T 3cog_A          249 SPIDCYLCNRGL--KTLHVRMEKHFKNGMAVAQFLES-NPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTL--  323 (403)
T ss_dssp             CHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCH--
T ss_pred             CHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCH--
Confidence            344566655543  33455566666677777777766 4433              22211   12566666532110  


Q ss_pred             CCchhhHHHHhhhhhHHHHHHHHhcccEEEe------------eeee------------CCc-ccEEEEecccCCCCHHH
Q psy12303        411 NMPHEKRLNILGEITPILKGRMMQAGTMMVG------------YQPL------------NDL-PNFFRNIISSAAVTEGD  465 (480)
Q Consensus       411 ~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~------------~~~~------------~~~-~~~~R~~~~~~~~t~~d  465 (480)
                                     ....+.+.+.+.+...            +...            .+. .+++|+| .+..+++++
T Consensus       324 ---------------~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlS-vg~e~~~d~  387 (403)
T 3cog_A          324 ---------------QHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLS-VGLEDEEDL  387 (403)
T ss_dssp             ---------------HHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEE-CCSSCHHHH
T ss_pred             ---------------HHHHHHHHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEE-eCCCCHHHH
Confidence                           1122333333432211            1000            021 4799999 777899999


Q ss_pred             HHHHHHHHHHhhc
Q psy12303        466 IDFLLTEMDRLGH  478 (480)
Q Consensus       466 i~~~~~~l~~~~~  478 (480)
                      |+.+.++|+++.+
T Consensus       388 i~~l~~al~~~~~  400 (403)
T 3cog_A          388 LEDLDQALKAAHP  400 (403)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999988765

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.88  E-value=1.3e-21  Score=194.98  Aligned_cols=308  Identities=8%  Similarity=-0.056  Sum_probs=191.1

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHH--HHHHHHHHhcCchhHhcCCC---ccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNL--YAFLAARHKMFPTYKEKGLS---AIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~--~al~~~~~~~~~~~~~~g~~---~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      ++++.++++++++++++++|+|+++++.  .++.++....      .|..   ..+|+ .|++..++|..+...+...|.
T Consensus        74 ~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~------~g~~~~~~~~gd-~Vlv~~p~y~~~~~~~~~~g~  146 (423)
T 3ez1_A           74 SARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGV------RGSTGPWLSQTP-KMIVTVPGYDRHFLLLQTLGF  146 (423)
T ss_dssp             HHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCC------TTCSSCGGGGCC-EEEEEESCCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccC------CCccccccCCCC-EEEEcCCCcHHHHHHHHHcCC
Confidence            4556688888998889999999999997  7777665410      0100   00024 788889999999999999998


Q ss_pred             CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEe-ccCCCccccccChH---HHHHHH-HHcCcEEEeeccccc
Q psy12303        191 GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNC-TSGTTVLGAFDPIE---EIADIC-QKYNMWLHVDAAWGG  265 (480)
Q Consensus       191 ~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~-~~~~~~~G~~~~l~---~I~~i~-~~~~~~l~vD~a~~~  265 (480)
                         +++.+|.++++ +|+++|++++++    ..++++|++ ++++||||.+.+.+   +|.++| ++||+++|+|++|+.
T Consensus       147 ---~~~~v~~~~~g-~d~~~l~~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~  218 (423)
T 3ez1_A          147 ---ELLTVDMQSDG-PDVDAVERLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRV  218 (423)
T ss_dssp             ---EEEEEEEETTE-ECHHHHHHHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSS
T ss_pred             ---EEEeccCCCCC-CCHHHHHHHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcch
Confidence               88899988765 999999999952    123888865 48999999998876   888888 899999999999985


Q ss_pred             ccccc-ccccCc-cc-----CCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCC
Q psy12303        266 GLLLS-KKYRHP-RL-----TGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGD  338 (480)
Q Consensus       266 ~~~~~-~~~~~~-~~-----~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  338 (480)
                      ..+.. .....+ ..     .+..+.++++.|++|+++.+.++|+++.++ .+..........+.               
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~-~~~~~~~~~~~~~~---------------  282 (423)
T 3ez1_A          219 HHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSE-DNIRWLSKYLGAQS---------------  282 (423)
T ss_dssp             CBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECH-HHHHHHHHHHHHSC---------------
T ss_pred             hhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCH-HHHHHHHHHHhhhc---------------
Confidence            43322 110000 00     012255688889999877678899888654 44433221110000               


Q ss_pred             ccccCCCCCCchHHHHHHHHhcH------HHHHHHHHHHH----HHHHHHHHHHhcCCC-CeEEecCCceeEEEEEeecC
Q psy12303        339 KVIQCGRHNDIFKLWLQWRAKGD------EGFEKQIDRLM----ELAEYMVKKIKSMPD-KFYLILEPEMVNVSFWYLPT  407 (480)
Q Consensus       339 ~~~~~~r~~~~l~~~~~l~~~g~------~~~~~~~~~~~----~l~~~l~~~l~~~~~-g~~~~~~~~~~~v~f~~~~~  407 (480)
                            .....+..+++...+..      +.+++..+...    .+.+.|.+.|.+ .. ++++. .|..+++++...+.
T Consensus       283 ------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~-~p~~g~~~~~~~~~  354 (423)
T 3ez1_A          283 ------IGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGE-GGEYATWT-LPKGGYFISLDTAE  354 (423)
T ss_dssp             ------SCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TTSSEEEC-CCSBSSCEEEEESS
T ss_pred             ------cCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-CCCceEEe-CCCccEEEEEECCC
Confidence                  00122222222222211      22333333333    344455555555 44 47764 55555554433332


Q ss_pred             ccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC-----CcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        408 RVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN-----DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       408 ~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~-----~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      . .              ...+.+.+.+.|+.+...+...     ...+++|++ .... ++++|++++++|++++++
T Consensus       355 ~-~--------------~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis-~~~~-~~~~i~~~~~~l~~~l~~  414 (423)
T 3ez1_A          355 P-V--------------ADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLA-PTRP-PVEEVRTAMQVVAACIRL  414 (423)
T ss_dssp             S-C--------------HHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEEC-CSSS-CHHHHHHHHHHHHHHHHH
T ss_pred             C-c--------------HHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEE-cCCC-CHHHHHHHHHHHHHHHHH
Confidence            1 0              2356677778885443312111     115799999 4433 999999999999987653

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.81  E-value=1.1e-24  Score=215.11  Aligned_cols=309  Identities=11%  Similarity=0.018  Sum_probs=206.0

Q ss_pred             hHHHHHHHHHHHHHHhC--CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH
Q psy12303        110 FILMETVVLEKMRQIIG--WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV  187 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g--~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~  187 (480)
                      ..++++++.+++++.+|  .++.++++|+|+++|+..++.++..              ||+ .|++..++|+++..++..
T Consensus        68 ~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~--------------~gd-~vl~~~p~~~~~~~~~~~  132 (392)
T 3b1d_A           68 SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTK--------------EGE-AVLINSPVYPPFARSVRL  132 (392)
Confidence            56788888888888888  4567899999999999999988754              334 788888999999998888


Q ss_pred             cCCCCCCeEEeeCC-C--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCcEEEeec
Q psy12303        188 CGLGTDNCVEVPSD-K--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMWLHVDA  261 (480)
Q Consensus       188 ~g~~~~~v~~v~~~-~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~  261 (480)
                      .|.   +++.+|.+ +  ++.+|+++|++++++.     ++++|++++++|++|.+.+   +++|.++|++||+++++|+
T Consensus       133 ~g~---~~~~~~~~~~~g~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De  204 (392)
T 3b1d_A          133 NNR---KLVSNSLKEENGLFQIDFEQLENDIVEN-----DVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDE  204 (392)
Confidence            887   67778874 3  3568999999998732     1778889999999999865   8999999999999999999


Q ss_pred             cccccccccccccCcccCCC----CCCccceeCccccCC-CcccceEEEEeCchhhHhhhcCCcccccccccccCcccCC
Q psy12303        262 AWGGGLLLSKKYRHPRLTGI----ERADSVTWNPHKLMG-TLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDT  336 (480)
Q Consensus       262 a~~~~~~~~~~~~~~~~~~~----~~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  336 (480)
                      +|+.+........  .+..+    .+.++++.+++|+++ .+..+|++++.++.+..........+...           
T Consensus       205 ~~~~~~~~g~~~~--~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-----------  271 (392)
T 3b1d_A          205 IHQDLTLFGHEHV--SFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHH-----------  271 (392)
Confidence            9998765321110  11111    244577889999997 55678998876654444332111111000           


Q ss_pred             CCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhh
Q psy12303        337 GDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEK  416 (480)
Q Consensus       337 ~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~  416 (480)
                            ........++..++.. +.+.+++..++..++++++.+.|++++|++++. ++..+.+.+...+..  +.+   
T Consensus       272 ------~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~i~~~~~--~~~---  338 (392)
T 3b1d_A          272 ------EVSSLGYIATETAYRY-GKPWLVALKAVLEENIQFAVEYFAQEAPRLKVM-KPQGTYLIWLDFSDY--GLT---  338 (392)
Confidence                  0001111222223332 345567778888889999999987624688764 455555543222210  000   


Q ss_pred             HHHHhhhhhHHHHHHHH-hcccEEEeeeeeC-CcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        417 RLNILGEITPILKGRMM-QAGTMMVGYQPLN-DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       417 ~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~-~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                              ..++.+.|. +.|+.+.....+. ...+++|+++.   .++++|++++++|+++++
T Consensus       339 --------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~---~~~e~i~~~l~~l~~~l~  391 (392)
T 3b1d_A          339 --------DDALFTLLHDQAKVILNRGSDYGSEGELHARLNIA---APKSLVEEICKRIVCCLP  391 (392)
Confidence                    134566675 5675443322221 11578999943   258999999999988764

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.88  E-value=8.6e-22  Score=195.94  Aligned_cols=315  Identities=12%  Similarity=0.062  Sum_probs=190.0

Q ss_pred             chhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCc----eEEEec-C
Q psy12303        103 TYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQ----LVMFTS-D  175 (480)
Q Consensus       103 ~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~----~~vl~~-~  175 (480)
                      .|....+..++.+.+.+++.+.+|.  +++++++|+|+|+|+..++.+++.              ||+    ..|+++ .
T Consensus        70 ~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~--------------~gd~~~~~~vi~~~~  135 (417)
T 3g7q_A           70 NYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAG--------------RRADGSTKKVLFPLA  135 (417)
T ss_dssp             STTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSB--------------C----CCBEEEESSC
T ss_pred             ccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcC--------------CCccCCcceEEEeCC
Confidence            4555556678888888888777765  567899999999999999988754              222    156776 7


Q ss_pred             CCchhHHHHHHHcC----CCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHH
Q psy12303        176 QCHYSVRSCAAVCG----LGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIA  247 (480)
Q Consensus       176 ~~h~s~~~~~~~~g----~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~  247 (480)
                      ++|+.+...+...+    .+. .+..++.+. ++.+|+++|+  ++++      +++|++++++||+|.+.|   +++|.
T Consensus       136 p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~l~--~~~~------~~~v~~~~p~NptG~~~~~~~~~~l~  206 (417)
T 3g7q_A          136 PEYIGYADSGLEDDLFVSARP-NIELLPEGQFKYHVDFEHLH--IGEE------TGMICVSRPTNPTGNVITDEELMKLD  206 (417)
T ss_dssp             CCHHHHHC-----CCEEECCC-EEEEEGGGEEEEECCGGGCC--CCTT------EEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             CccccchhhccchhhhccccC-cccccCCcccccccCHHHhc--cccC------ceEEEECCCCCCCCCccCHHHHHHHH
Confidence            78877766654332    211 344444432 3578998887  4333      899999999999999988   89999


Q ss_pred             HHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccc
Q psy12303        248 DICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQD  327 (480)
Q Consensus       248 ~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  327 (480)
                      ++|++||+++|+|++|+.+........  ......+.++++.|++|++..+.++|+++. ++.+..........+..   
T Consensus       207 ~~a~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~---  280 (417)
T 3g7q_A          207 RLANQHNIPLVIDNAYGVPFPGIIFSE--ARPLWNPNIILCMSLSKLGLPGSRCGIIIA-NDKTITAIANMNGIISL---  280 (417)
T ss_dssp             HHHHHTTCCEEEECTTCTTTTCCBCSC--CCCCCCTTEEEEEESGGGTCTTSCCEEEEC-CHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHcCCEEEEeCCCccccccccccc--cccCCCCCEEEEEechhccCCCcceEEEEe-CHHHHHHHHHhhcceee---
Confidence            999999999999999986422111111  111223567888899997666577898775 44444433211110000   


Q ss_pred             cccCcccCCCCccccCCCCCCchHHHHHHHHhcH-HHHHH-HHHHHHHHHHHHHHHHhcCCC--CeEEecCCceeEEEEE
Q psy12303        328 KLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGD-EGFEK-QIDRLMELAEYMVKKIKSMPD--KFYLILEPEMVNVSFW  403 (480)
Q Consensus       328 ~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~-~~~~~-~~~~~~~l~~~l~~~l~~~~~--g~~~~~~~~~~~v~f~  403 (480)
                                     ++.......+...+..... +...+ +.++..++.+++.+.|.+.++  ++++. .|..+.+++.
T Consensus       281 ---------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~g~~~~~  344 (417)
T 3g7q_A          281 ---------------APGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIH-KPEGAIFLWL  344 (417)
T ss_dssp             ---------------CCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEE-CCCBSSEEEE
T ss_pred             ---------------CCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceee-CCCcceEEEE
Confidence                           0000111122222222111 11222 445566677777777765234  47765 4555555543


Q ss_pred             eecC-ccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC-Cc-------ccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        404 YLPT-RVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN-DL-------PNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       404 ~~~~-~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~-~~-------~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                      ..+. ...              ..++.+.|.+.|+.+.....+. +.       .+++|+++ ..  ++++|++++++|+
T Consensus       345 ~~~~~~~~--------------~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~-~~--~~~~i~~~~~~l~  407 (417)
T 3g7q_A          345 WFKDLPIT--------------TELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNY-VP--EPDKIEAGVKILA  407 (417)
T ss_dssp             ECTTCSSC--------------HHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEES-CS--CHHHHHHHHHHHH
T ss_pred             EcCCCCCC--------------HHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEe-cC--CHHHHHHHHHHHH
Confidence            3332 111              2456677878885544322111 10       46999994 43  8999999999999


Q ss_pred             Hhhcc
Q psy12303        475 RLGHD  479 (480)
Q Consensus       475 ~~~~~  479 (480)
                      +++++
T Consensus       408 ~~l~~  412 (417)
T 3g7q_A          408 EEIER  412 (417)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87754

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.88  E-value=1.2e-21  Score=195.65  Aligned_cols=308  Identities=10%  Similarity=-0.069  Sum_probs=192.5

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHH--HHHHHHHHhcCchhHhcCC----CccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNL--YAFLAARHKMFPTYKEKGL----SAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~--~al~~~~~~~~~~~~~~g~----~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      ++++.++++++++++++++|+|+++++.  .++.++.+..      .|.    ...+|+ .|++..++|.++...++..|
T Consensus        82 ~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~------~g~~~~~~~~~gd-~V~v~~p~y~~~~~~~~~~g  154 (427)
T 3ppl_A           82 DIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGN------NDSVQPWSKEETV-KWICPVPGYDRHFSITERFG  154 (427)
T ss_dssp             HHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCC------TTCSSCGGGSSCC-EEEEEESCCHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccC------CcccccccCCCCC-EEEEcCCCcHHHHHHHHHcC
Confidence            3555677777998889999999999994  6666665410      000    000145 78889999999999999999


Q ss_pred             CCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEec-cCCCccccccChH---HHHHHH-HHcCcEEEeecccc
Q psy12303        190 LGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCT-SGTTVLGAFDPIE---EIADIC-QKYNMWLHVDAAWG  264 (480)
Q Consensus       190 ~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~-~~~~~~G~~~~l~---~I~~i~-~~~~~~l~vD~a~~  264 (480)
                      .   +++.+|+++++ +|+++|+++++.     .++++|+++ +++||||.+.|.+   +|.++| ++||+++|+|++|+
T Consensus       155 ~---~~~~v~~~~~g-~d~~~l~~~l~~-----~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~  225 (427)
T 3ppl_A          155 F---EMISVPMNEDG-PDMDAVEELVKN-----PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYA  225 (427)
T ss_dssp             C---EEEEEEEETTE-ECHHHHHHHTTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTT
T ss_pred             C---EEEEeCCCCCC-CCHHHHHHHHhc-----CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCc
Confidence            8   88999998776 999999999842     127888765 8899999998876   888888 99999999999998


Q ss_pred             ccccccccccC-ccc-----CCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCC
Q psy12303        265 GGLLLSKKYRH-PRL-----TGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGD  338 (480)
Q Consensus       265 ~~~~~~~~~~~-~~~-----~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  338 (480)
                      ...+....... +..     .+..+.++++.|++|+++.+.++|+++.. +.+............               
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~-~~l~~~~~~~~~~~~---------------  289 (427)
T 3ppl_A          226 VHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTS-AENRKWYTGHAGIRG---------------  289 (427)
T ss_dssp             TCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECC-HHHHHHHHHHHHHHC---------------
T ss_pred             ccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcC-HHHHHHHHHHhhccc---------------
Confidence            75442211000 001     11235678888999997766788988754 444433221100000               


Q ss_pred             ccccCCCCCCchHHHHHHHHhcH-----HHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeEEEEEeecCccC
Q psy12303        339 KVIQCGRHNDIFKLWLQWRAKGD-----EGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVNVSFWYLPTRVR  410 (480)
Q Consensus       339 ~~~~~~r~~~~l~~~~~l~~~g~-----~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~v~f~~~~~~~~  410 (480)
                            .....+..++....+..     +.+.+..+...+..+.+.+.|.++   .+++.+. .|..+.+++...+.. .
T Consensus       290 ------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~-~p~~g~~~~~~~~~~-~  361 (427)
T 3ppl_A          290 ------IGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWT-VPAGGYFISLDVVPG-T  361 (427)
T ss_dssp             ------SCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEC-CCSBSSCEEEECSTT-C
T ss_pred             ------CCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEe-CCCccEEEEEECCcc-h
Confidence                  00122233333333221     233444444444555555554331   3457764 455555554333221 0


Q ss_pred             CCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC-----CcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        411 NMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN-----DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       411 ~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~-----~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                                    ..++.+.|.+.|+.+...+...     ...+++|+++ ... ++++|++++++|.+++++
T Consensus       362 --------------~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~-~~~-~~~~i~~~~~~l~~~l~~  419 (427)
T 3ppl_A          362 --------------ASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAP-SLP-PVEELEVAMDGVATCVLL  419 (427)
T ss_dssp             --------------HHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECC-SSS-CHHHHHHHHHHHHHHHHH
T ss_pred             --------------HHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEEC-CCC-CHHHHHHHHHHHHHHHHH
Confidence                          2356677778885443312111     1257999994 333 899999999999887653

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.88  E-value=3.6e-22  Score=198.92  Aligned_cols=340  Identities=11%  Similarity=-0.020  Sum_probs=211.0

Q ss_pred             CCCCccccccCCCChHHhHHHHHHHHcCc-CCcchhcChhhHHHHHHHHHHHHHHhCC--CCC--CeEECCChhHHHHHH
Q psy12303         71 GHPMFMNQLSCGLDVVSMAGEWLIATANT-NMFTYEIAPVFILMETVVLEKMRQIIGW--QGG--DSILAPGGSISNLYA  145 (480)
Q Consensus        71 ~~p~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~--~~~~t~ggt~a~~~a  145 (480)
                      ....|++.....+.++.+. +.+...+.. ....|....+..++.+++.+++....+.  +++  ++++|+|||+|+..+
T Consensus        55 ~~G~y~d~~~~~~~~~~v~-~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~  133 (420)
T 4f4e_A           55 GVGVYTNEDGKIPLLRAVR-DAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIG  133 (420)
T ss_dssp             CCCSCCCTTSCCCCCHHHH-HHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHH
T ss_pred             eeeeeECCCCCccCcHHHH-HHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHH
Confidence            3344443333333335555 444443333 3344555556677777777766554432  345  789999999999999


Q ss_pred             HHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeC--CCCCCCCHHHHHHHHHHHHHCCC
Q psy12303        146 FLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPS--DKRGRLIPSELERLVLERKAKGD  223 (480)
Q Consensus       146 l~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~~~  223 (480)
                      +..+...            .||+ .|+++.++|.++...++..|.   +++.+|.  ++++.+|+++|++++++.   ..
T Consensus       134 ~~~~~~~------------~~gd-~Vlv~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~  194 (420)
T 4f4e_A          134 ADFLRTL------------NPKA-KVAISDPSWENHRALFDMAGF---EVVAYPYYDAKTNGVNFDGMLAALNGY---EP  194 (420)
T ss_dssp             HHHHHHH------------CTTC-CEEEEESCCHHHHHHHHHTTC---CEEEEECEETTTTEECHHHHHHHHTTC---CT
T ss_pred             HHHHHHh------------CCCC-EEEEeCCCcHhHHHHHHHcCC---eEEEeeeeccccCccCHHHHHHHHHhC---CC
Confidence            6533211            0445 788888999999999999998   8899998  346889999999999732   12


Q ss_pred             ccEEEEeccCCCccccccC---hHHHHHHHHHcCcEEEeecccccccccccc--ccCcccCCCCCCccceeCccccCCC-
Q psy12303        224 IPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKK--YRHPRLTGIERADSVTWNPHKLMGT-  297 (480)
Q Consensus       224 ~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~--~~~~~~~~~~~~D~~~~s~hK~~~~-  297 (480)
                      ++++|++++++||||.+.+   +++|+++|++||+++++|++|+.+....+.  .....+.+....++++.|++|.++. 
T Consensus       195 ~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  274 (420)
T 4f4e_A          195 GTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLY  274 (420)
T ss_dssp             TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCG
T ss_pred             CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCc
Confidence            3889999999999999955   678999999999999999999887653211  0000111222456788899999984 


Q ss_pred             cccceEEEE--eCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--c------HHHHHHH
Q psy12303        298 LLQCSTIHF--KQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--G------DEGFEKQ  367 (480)
Q Consensus       298 p~~~g~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g------~~~~~~~  367 (480)
                      +.++|++++  .+...................              .+   ...+..+++...+  +      .+.++++
T Consensus       275 G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  337 (420)
T 4f4e_A          275 GERVGALSIITDSKDEAARVLSQLKRVIRTNY--------------SN---PPTHGGAIVAAVLASPELRASWVQELGEM  337 (420)
T ss_dssp             GGCEEEEEEECSSHHHHHHHHHHHHHHHHTTT--------------SS---CCSHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEEcCCHHHHHHHHHHHHHHHhccc--------------CC---CCHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            466898864  334333221100000000000              00   1122222222111  1      3456788


Q ss_pred             HHHHHHHHHHHHHHHhcCC---CCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeee
Q psy12303        368 IDRLMELAEYMVKKIKSMP---DKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQP  444 (480)
Q Consensus       368 ~~~~~~l~~~l~~~l~~~~---~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~  444 (480)
                      .++..++++++.+.|++ .   +++.+. .|..+.++|...    .              ...+...+.+.|+ ++.+  
T Consensus       338 ~~~~~~~~~~l~~~L~~-~~~~~~~~~~-~~~~g~~~~~~~----~--------------~~~~~~~l~~~gI-~v~~--  394 (420)
T 4f4e_A          338 RDRIRAMRNGLVERLKA-AGIERDFSFI-NAQRGMFSYSGL----T--------------SAQVDRLREEFGI-YAVS--  394 (420)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTCSSCCTHH-HHSCSSEEECCC----C--------------HHHHHHHHHHHCE-ECCT--
T ss_pred             HHHHHHHHHHHHHHHHh-cCCCCCceeE-CCCccEEEEeCC----C--------------HHHHHHHHHhCCE-EecC--
Confidence            88899999999999998 5   366653 355666655211    1              1234455556673 3332  


Q ss_pred             eCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        445 LNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       445 ~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                        +    .|+++.  ..++++|++++++|+++++
T Consensus       395 --~----~Ris~~--~~~~~~i~~~~~~l~~~l~  420 (420)
T 4f4e_A          395 --T----GRICVA--ALNTRNLDVVANAIAAVLK  420 (420)
T ss_dssp             --T----SEEEGG--GCCTTTHHHHHHHHHHHHC
T ss_pred             --C----CeEEEe--cCCHHHHHHHHHHHHHHhC
Confidence              1    299953  2367779999999998753

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.88  E-value=9.7e-21  Score=189.04  Aligned_cols=305  Identities=11%  Similarity=0.077  Sum_probs=178.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC-ceEEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG-QLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g-~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .....++++.+++++|.  ..++|++|||+|+..++++++....   ..+|.  .|| +.+|+.....|.+...++...|
T Consensus       106 ~~~~~~l~~~la~~~g~--~~v~~~~sGseA~~~al~~a~~~~~---~~~g~--~~gr~~vi~~~~~yhg~~~~~~~~~g  178 (433)
T 1z7d_A          106 SVPLGICERYLTNLLGY--DKVLMMNTGAEANETAYKLCRKWGY---EVKKI--PENMAKIVVCKNNFSGRTLGCISAST  178 (433)
T ss_dssp             EHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHHHHH---HTSCC--CTTCCEEEEETTC-------------
T ss_pred             CHHHHHHHHHHHhhcCC--CeEEEeCCHHHHHHHHHHHHHHHhh---hccCC--CCCCCeEEEEeCCcCCcchhhhcccC
Confidence            45556677888888885  3599999999999999998874200   01121  134 4344444455666555555544


Q ss_pred             C-------C--CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc----ChHHHHHHHHHcCcE
Q psy12303        190 L-------G--TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD----PIEEIADICQKYNMW  256 (480)
Q Consensus       190 ~-------~--~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~----~l~~I~~i~~~~~~~  256 (480)
                      .       +  ...+..+|.+     |+++|+++++.     .++++|+++..++++|.+.    ++++|.++|++||++
T Consensus       179 ~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~l  248 (433)
T 1z7d_A          179 TKKCTSNFGPFAPQFSKVPYD-----DLEALEEELKD-----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVL  248 (433)
T ss_dssp             -------------CEEEECTT-----CHHHHHHHHTS-----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCE
T ss_pred             CccccccCCCCCCCeEEeCCC-----CHHHHHHHhCC-----CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCE
Confidence            1       0  0245666654     89999999851     1288888888878889865    699999999999999


Q ss_pred             EEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccC
Q psy12303        257 LHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYD  335 (480)
Q Consensus       257 l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  335 (480)
                      +|+|++|+++......... ...++ .+|+++  ++|+++++ .+.|++++++ ++.+....   ..  .          
T Consensus       249 lI~DEv~~g~g~~g~~~~~-~~~~~-~~di~t--~sK~l~~G~~~~G~v~~~~-~~~~~l~~---~~--~----------  308 (433)
T 1z7d_A          249 FVADEVQTGLGRTGKLLCV-HHYNV-KPDVIL--LGKALSGGHYPISAVLAND-DIMLVIKP---GE--H----------  308 (433)
T ss_dssp             EEEECTTTTTTTTSSSSGG-GGGTC-CCSEEE--ECGGGGTTSSCCEEEEECH-HHHTTCCT---TC--C----------
T ss_pred             EEEecCccCCCcCCcchhh-HhcCC-CCCEEE--ECccccCCCCCeEEEEECH-HHHhhhcc---cc--c----------
Confidence            9999999864332221111 12233 578775  66999976 5789988754 44332211   00  0          


Q ss_pred             CCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeEEEEEeecCccCCC
Q psy12303        336 TGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVNVSFWYLPTRVRNM  412 (480)
Q Consensus       336 ~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~v~f~~~~~~~~~~  412 (480)
                      ..++   .+......++.++++.+..   ++..++..++++++.+.|++.   .+.+..+ ++...++.+.+....   .
T Consensus       309 ~~t~---~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~~~g~~~~i~~~~~~---~  378 (433)
T 1z7d_A          309 GSTY---GGNPLAASICVEALNVLIN---EKLCENAEKLGGPFLENLKRELKDSKIVRDV-RGKGLLCAIEFKNEL---V  378 (433)
T ss_dssp             CCTT---TTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEE-EEETTEEEEEECTTT---C
T ss_pred             cccC---CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EeeeeEEEEEEccCh---h
Confidence            0000   1111122233333443322   245677778888888888750   2333322 233344444432110   0


Q ss_pred             chhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        413 PHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       413 ~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +           ..++.+.|.++|++ +.+.   + .+++|++ ++..+|++||++++++|++++++
T Consensus       379 ~-----------~~~~~~~l~~~Gv~-v~~~---~-~~~iRi~-~~~~~t~e~i~~~l~~l~~~l~~  428 (433)
T 1z7d_A          379 N-----------VLDICLKLKENGLI-TRDV---H-DKTIRLT-PPLCITKEQLDECTEIIVKTVKF  428 (433)
T ss_dssp             C-----------HHHHHHHHHHTTEE-CCEE---T-TTEEEEC-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             H-----------HHHHHHHHHHCCeE-EecC---C-CCEEEEE-CCcCCCHHHHHHHHHHHHHHHHH
Confidence            0           23577888888844 3332   2 4799999 78889999999999999987653

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.88  E-value=9.8e-22  Score=195.84  Aligned_cols=309  Identities=10%  Similarity=-0.041  Sum_probs=189.1

Q ss_pred             HHHHHHHHhCCCCCCeEECCChhHHH--HHHHHHHHHhcCchhHhcCCCcc-C-CceEEEecCCCchhHHHHHHHcCCCC
Q psy12303        117 VLEKMRQIIGWQGGDSILAPGGSISN--LYAFLAARHKMFPTYKEKGLSAI-K-GQLVMFTSDQCHYSVRSCAAVCGLGT  192 (480)
Q Consensus       117 ~~~~la~~~g~~~~~~~~t~ggt~a~--~~al~~~~~~~~~~~~~~g~~~~-~-g~~~vl~~~~~h~s~~~~~~~~g~~~  192 (480)
                      +++.+++++|++++++++|+|+++++  ..++.+.....     ..|.... . ....|++..++|+.+...++..|.  
T Consensus        81 lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~~~-----~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~--  153 (422)
T 3d6k_A           81 IRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGN-----NDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGF--  153 (422)
T ss_dssp             HHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHHCC-----TTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTC--
T ss_pred             HHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhcCcc-----cccccccccCCCCEEEEeCCccHHHHHHHHHcCC--
Confidence            45557777789888999999999987  34444443210     0010000 0 012688888999999999999988  


Q ss_pred             CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEE-eccCCCccccccChH---HHHHHHH-HcCcEEEeeccccccc
Q psy12303        193 DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVN-CTSGTTVLGAFDPIE---EIADICQ-KYNMWLHVDAAWGGGL  267 (480)
Q Consensus       193 ~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~-~~~~~~~~G~~~~l~---~I~~i~~-~~~~~l~vD~a~~~~~  267 (480)
                       +++.+|.++++ +|+++|++++++.     ++++|+ +++++||||.+.+.+   +|.++|+ +||+++|+|++|+...
T Consensus       154 -~~~~v~~~~~g-~d~~~l~~~l~~~-----~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~  226 (422)
T 3d6k_A          154 -EMINVPMTDEG-PDMGVVRELVKDP-----QVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHT  226 (422)
T ss_dssp             -EEEEEEEETTE-ECHHHHHHHHTST-----TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCB
T ss_pred             -EEEecCCCCCC-CCHHHHHHHHhcC-----CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccc
Confidence             88899987765 9999999998641     278877 789999999998876   7777787 9999999999998522


Q ss_pred             cccccccC-ccc-----CCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccc
Q psy12303        268 LLSKKYRH-PRL-----TGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVI  341 (480)
Q Consensus       268 ~~~~~~~~-~~~-----~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  341 (480)
                      +..+.... +..     .+..+.++++.|++|+++.+.++|+++++ ++++.........+.                  
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~-~~l~~~l~~~~~~~~------------------  287 (422)
T 3d6k_A          227 LSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASS-KENIEWYASHANVRG------------------  287 (422)
T ss_dssp             SSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECC-HHHHHHHHHHHHHHC------------------
T ss_pred             cCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeC-HHHHHHHHHHHHhhc------------------
Confidence            21111000 010     11224567888999995555678998865 444443321110000                  


Q ss_pred             cCCCCCCchHHHHHHHHhcH-----HHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeEEEEEeecCccCCCc
Q psy12303        342 QCGRHNDIFKLWLQWRAKGD-----EGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVNVSFWYLPTRVRNMP  413 (480)
Q Consensus       342 ~~~r~~~~l~~~~~l~~~g~-----~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~v~f~~~~~~~~~~~  413 (480)
                         .....+...++...+..     +.+++..++..+..+++.+.|.++   .+++++. .|..+++++...+..    +
T Consensus       288 ---~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~-~p~~g~~~~~~~~~~----~  359 (422)
T 3d6k_A          288 ---IGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWT-SPTGGYFISVDVVPG----T  359 (422)
T ss_dssp             ---SCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEC-CCSBSSCEEEEESTT----C
T ss_pred             ---CCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEe-CCCcceEEEEECCCC----C
Confidence               00123333344443322     334444555555555555555431   2346764 455555544333321    0


Q ss_pred             hhhHHHHhhhhhHHHHHHHHhcccEEEeeee-eC----CcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        414 HEKRLNILGEITPILKGRMMQAGTMMVGYQP-LN----DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       414 ~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~-~~----~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                                 ...+.+.+.+.|+.+...+. +.    ...+++|++ ... ++++++++++++|++++++
T Consensus       360 -----------~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis-~~~-~~~e~i~~~~~~l~~~l~~  417 (422)
T 3d6k_A          360 -----------ASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLA-PSL-PPVAELEVAMDGFATCVLM  417 (422)
T ss_dssp             -----------HHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEEC-CSS-SCHHHHHHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEe-cCC-CCHHHHHHHHHHHHHHHHH
Confidence                       13455677778854433122 21    114799999 444 7999999999999987653

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.88  E-value=3.4e-21  Score=192.96  Aligned_cols=318  Identities=14%  Similarity=0.029  Sum_probs=191.1

Q ss_pred             hhHHHHHHHHHHHHHHhCCCC-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH
Q psy12303        109 VFILMETVVLEKMRQIIGWQG-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV  187 (480)
Q Consensus       109 ~~~~~e~~~~~~la~~~g~~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~  187 (480)
                      .......+++++++++++... ..++||+|||+|+..++++++...            +++.+|+.....|.+...++..
T Consensus        83 ~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~------------~~~~vi~~~~~yhg~~~~~~~~  150 (439)
T 3dxv_A           83 ASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKAT------------GRSGVIAFAGAYHGCTVGSMAF  150 (439)
T ss_dssp             SEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHH------------SCCEEEEETTCCCCSSHHHHCC
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHh------------CCCEEEEECCCCCCCcHHHHhh
Confidence            345677788999999997654 579999999999999999886421            1243666677777776666554


Q ss_pred             cCCCC--C---------CeEEeeCCCCCCC-----CHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHH
Q psy12303        188 CGLGT--D---------NCVEVPSDKRGRL-----IPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIA  247 (480)
Q Consensus       188 ~g~~~--~---------~v~~v~~~~~~~~-----d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~  247 (480)
                      .+...  .         .+..+|.+..+.-     |+++|++++++  .....+++|+++..++++|.+.|    +++|.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~  228 (439)
T 3dxv_A          151 SGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAA--VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFA  228 (439)
T ss_dssp             -------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHT--SCTTCEEEEEECSSBSTTTSBCCCTTHHHHHH
T ss_pred             cCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHh--cCCCCEEEEEEccccCCCCCccCCHHHHHHHH
Confidence            44311  0         0233444332222     68999999851  11234889999999999999988    99999


Q ss_pred             HHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccc
Q psy12303        248 DICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQD  327 (480)
Q Consensus       248 ~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  327 (480)
                      ++|++||+++|+|++|+++......... ...++ ..|+++  ++|.+++++++|+++.+. +........    ...  
T Consensus       229 ~l~~~~~~~li~DE~~~g~g~~g~~~~~-~~~~~-~~di~s--~sK~~~~G~riG~~~~~~-~~~~~~~~~----~~~--  297 (439)
T 3dxv_A          229 DICRAHGILVVCDEVKVGLARSGRLHCF-EHEGF-VPDILV--LGKGLGGGLPLSAVIAPA-EILDCASAF----AMQ--  297 (439)
T ss_dssp             HHHHHTTCEEEEECTTTCTTTTSSSSGG-GGTTC-CCSEEE--ECGGGGTTSCCEEEEEEH-HHHTSCSSS----SCC--
T ss_pred             HHHHHcCCEEEEeccccCCCcCchhhHH-HhcCC-CCCEEE--EcchhcCCcceEEEEECH-HHHhhhcCC----CcC--
Confidence            9999999999999999864322211111 12233 467764  669998777789888653 343322110    000  


Q ss_pred             cccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeEEEEEe
Q psy12303        328 KLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVNVSFWY  404 (480)
Q Consensus       328 ~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~v~f~~  404 (480)
                                     .+. ...+.+.+++..+..-.-+++.++..++.+++.+.|.+.   .+.+..+ ++....+.+.+
T Consensus       298 ---------------~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~  360 (439)
T 3dxv_A          298 ---------------TLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDI-RGRGLACGMEL  360 (439)
T ss_dssp             ---------------TTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEE
T ss_pred             ---------------CCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEE
Confidence                           011 123333333333211111344556666666666655540   4555543 34444455544


Q ss_pred             ecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        405 LPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       405 ~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ............       ...++.+.|.++|+++... . .. .+++|++ ++..+|++++++++++|++++++
T Consensus       361 ~~~~~~~~~~~~-------~~~~~~~~l~~~Gv~v~~~-~-~~-~~~iRi~-~~~~~t~e~i~~~l~~l~~~l~~  424 (439)
T 3dxv_A          361 VCDRQSREPARA-------ETAKLIYRAYQLGLVVYYV-G-MN-GNVLEFT-PPLTITETDIHKALDLLDRAFSE  424 (439)
T ss_dssp             EEETTTTEECHH-------HHHHHHHHHHHHTEECEEE-S-TT-SCEEEEC-CCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ecCccccCCCHH-------HHHHHHHHHHHCCcEEeec-C-CC-CCEEEEE-CCCCCCHHHHHHHHHHHHHHHHH
Confidence            321100000000       1245677888888544332 2 11 4799999 88899999999999999988764

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.88  E-value=1.5e-21  Score=194.24  Aligned_cols=302  Identities=14%  Similarity=0.054  Sum_probs=190.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCc-eEEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQ-LVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~-~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .....++++++++++|.  ..+++|+|||+|+..++++++...    ..+|.   ||+ .+|+.....|.+...++...|
T Consensus        98 ~~~~~~l~~~la~~~g~--~~v~~~~ggteA~~~al~~~~~~~----~~~~~---~g~~~vi~~~~~yh~~~~~~~~~~g  168 (420)
T 2pb2_A           98 NEPALRLGRKLIDATFA--ERVLFMNSGTEANETAFKLARHYA----CVRHS---PFKTKIIAFHNAFHGRSLFTVSVGG  168 (420)
T ss_dssp             CHHHHHHHHHHHHHSSC--SEEEEESSHHHHHHHHHHHHHHHH----HHHTC---TTCCEEEEETTCCCCSSHHHHHHSS
T ss_pred             CHHHHHHHHHHHhhCCC--CeEEEeCCHHHHHHHHHHHHHHHh----hhccC---CCCCEEEEEeCCcCCcCHHHHHhcC
Confidence            45666788889999885  469999999999999999987521    11121   333 344455556666666666665


Q ss_pred             CC---------CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccc----ccChHHHHHHHHHcCcE
Q psy12303        190 LG---------TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGA----FDPIEEIADICQKYNMW  256 (480)
Q Consensus       190 ~~---------~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~----~~~l~~I~~i~~~~~~~  256 (480)
                      ..         ...+..+|.+     |+++|+++++++      +++|+++.+++++|.    .+++++|.++|++||++
T Consensus       169 ~~~~~~~~~p~~~~~~~~~~~-----d~~~le~~i~~~------~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~  237 (420)
T 2pb2_A          169 QPKYSDGFGPKPADIIHVPFN-----DLHAVKAVMDDH------TCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQAL  237 (420)
T ss_dssp             CHHHHTTSSSCCSCEEEECTT-----CHHHHHHHCCTT------EEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCE
T ss_pred             CccccccCCCCCCCeEEecCC-----CHHHHHHHhccC------ceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCE
Confidence            31         0125666653     899999998753      899999999887776    35799999999999999


Q ss_pred             EEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCC
Q psy12303        257 LHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDT  336 (480)
Q Consensus       257 l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  336 (480)
                      +|+|++|.++......... ...++ .+|+++  ++|+++++.++|+++++++ +.+...   .... .           
T Consensus       238 lI~Dev~~g~~~~g~~~~~-~~~~~-~~diit--~sK~l~~G~~iG~~~~~~~-l~~~l~---~~~~-~-----------  297 (420)
T 2pb2_A          238 LVFDEVQCGMGRTGDLFAY-MHYGV-TPDILT--SAKALGGGFPVSAMLTTQE-IASAFH---VGSH-G-----------  297 (420)
T ss_dssp             EEEECTTTTTTTTSSSSHH-HHHTC-CCSEEE--ECGGGGTTSCCEEEEECHH-HHTTCC--------C-----------
T ss_pred             EEEEcCCcCcccCCcHHHH-HhcCC-CCCeEE--ecccccCCCceEEEEEhHH-HHHhhc---CCCc-C-----------
Confidence            9999999764332211111 11233 478775  5799997778999998653 333211   1000 0           


Q ss_pred             CCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC----CCeEEecCCceeEEEEEeecCccCCC
Q psy12303        337 GDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP----DKFYLILEPEMVNVSFWYLPTRVRNM  412 (480)
Q Consensus       337 ~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~----~g~~~~~~~~~~~v~f~~~~~~~~~~  412 (480)
                      .  ++ .+......++..+++.+..   +++.++..++++++.+.|++ .    +.+..+ ++...++.+.+....  ..
T Consensus       298 ~--t~-~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~-~~~g~~~~v~~~~~~--~~  367 (420)
T 2pb2_A          298 S--TY-GGNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQA-IDEQFDIFSDI-RGMGLLIGAELKPKY--KG  367 (420)
T ss_dssp             C--EE-CCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHH-HHHHHCCEEEE-EEETTEEEEEECGGG--TT
T ss_pred             c--cc-CcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHH-HHhcCCCeEEE-EecceEEEEEECCCc--hH
Confidence            0  00 1111122233344444332   35667778888888888876 4    433322 234444555432110  00


Q ss_pred             chhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        413 PHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       413 ~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                                 ...++.+.|.+.|+++ .+.   + .+++|++ ++..+|++|+++++++|++++++
T Consensus       368 -----------~~~~l~~~l~~~Gi~v-~~~---~-~~~iRl~-~~~~~t~eei~~~~~~l~~~l~~  417 (420)
T 2pb2_A          368 -----------RARDFLYAGAEAGVMV-LNA---G-ADVMRFA-PSLVVEEADIHEGMQRFAQAVGK  417 (420)
T ss_dssp             -----------CHHHHHHHHHHTTEEC-EES---S-TTEEEEC-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHCCCEE-EeC---C-CCEEEEE-CCCCCCHHHHHHHHHHHHHHHHH
Confidence                       0245777888888443 332   2 4799999 77889999999999999987754

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.88  E-value=3.6e-21  Score=190.16  Aligned_cols=299  Identities=15%  Similarity=0.096  Sum_probs=190.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC-ceEEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG-QLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g-~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .....++++.+++++|.  .++++|+|||+|+..++.+++...     ..|   .|| +.+|+.+...|.+...++...|
T Consensus        81 ~~~~~~l~~~la~~~g~--~~v~~~~gg~~a~~~al~~~~~~~-----~~~---~~~~~~vi~~~~~yh~~~~~~~~~~g  150 (397)
T 2ord_A           81 NRPQMELAELLSKNTFG--GKVFFANTGTEANEAAIKIARKYG-----KKK---SEKKYRILSAHNSFHGRTLGSLTATG  150 (397)
T ss_dssp             EHHHHHHHHHHHHTTTS--CEEEEESSHHHHHHHHHHHHHHHH-----HHH---CTTCCEEEEEBTCCCCSSHHHHHHSB
T ss_pred             CHHHHHHHHHHHHhcCC--CeEEEeCCHHHHHHHHHHHHHHHh-----hcC---CCCCceEEEEcCCcCCCchhhhhccC
Confidence            35566778889999884  469999999999999999876420     000   022 3355555666777777777777


Q ss_pred             CC---------CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccc----ccChHHHHHHHHHcCcE
Q psy12303        190 LG---------TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGA----FDPIEEIADICQKYNMW  256 (480)
Q Consensus       190 ~~---------~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~----~~~l~~I~~i~~~~~~~  256 (480)
                      ..         ...++.+|.+     |+++|+++++++      +++|++++++|++|.    .+++++|.++|++||++
T Consensus       151 ~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~  219 (397)
T 2ord_A          151 QPKYQKPFEPLVPGFEYFEFN-----NVEDLRRKMSED------VCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDAL  219 (397)
T ss_dssp             CHHHHGGGCSCCTTEEEECTT-----CHHHHHHHCCTT------EEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCE
T ss_pred             ChhhccccCCCCCCeeEecCC-----CHHHHHHHhhcC------eEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence            52         0126677764     899999988753      899999999999999    36799999999999999


Q ss_pred             EEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCC
Q psy12303        257 LHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDT  336 (480)
Q Consensus       257 l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  336 (480)
                      +++|++|++.......... ...+. .+|+++  ++|+++++.++|+++++++ .. ...   ...  .          .
T Consensus       220 li~De~~~~~~~~g~~~~~-~~~~~-~~d~~s--~sK~~~~G~r~G~~~~~~~-~~-~l~---~~~--~----------~  278 (397)
T 2ord_A          220 LVFDEVQCGMGRTGKLFAY-QKYGV-VPDVLT--TAKGLGGGVPIGAVIVNER-AN-VLE---PGD--H----------G  278 (397)
T ss_dssp             EEEECTTTTTTTTSSSSHH-HHHTC-CCSEEE--ECGGGGTTSCCEEEEECST-TC-CCC---TTS--S----------C
T ss_pred             EEEEecccCCccCccchhh-hhhCC-CCCeee--eccccCCCcCeEEEEEchH-hc-ccC---CCC--c----------C
Confidence            9999999854322111110 11122 367765  5799997788999998664 22 211   000  0          0


Q ss_pred             CCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC----CCeEEecCCceeEEEEEeecCccCCC
Q psy12303        337 GDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP----DKFYLILEPEMVNVSFWYLPTRVRNM  412 (480)
Q Consensus       337 ~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~----~g~~~~~~~~~~~v~f~~~~~~~~~~  412 (480)
                      ..+   ........++..+++.+..   ++..++..++++++.+.|++ .    +.+... ++....+.+.+. ....  
T Consensus       279 ~~~---~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~-~~~g~~~~~~~~-~~~~--  347 (397)
T 2ord_A          279 TTF---GGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQE-MKEEYDVVADV-RGMGLMIGIQFR-EEVS--  347 (397)
T ss_dssp             CSS---TTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHH-HHHHCTTEEEE-EEETTEEEEEEC-TTSC--
T ss_pred             CCC---CCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHH-HHHhCCceEEE-EEEeEEEEEEEC-ChHH--
Confidence            000   0000122223333433322   35667778888888888876 3    322221 233444555432 1100  


Q ss_pred             chhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        413 PHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       413 ~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                                  ..++.+.|.+.|+. +.+.   + .+++|++ ++..++++|+++++++|+++++++
T Consensus       348 ------------~~~l~~~l~~~gi~-v~~~---~-~~~iRis-~~~~~~~e~i~~~~~~l~~~l~~~  397 (397)
T 2ord_A          348 ------------NREVATKCFENKLL-VVPA---G-NNTIRFL-PPLTVEYGEIDLAVETLKKVLQGI  397 (397)
T ss_dssp             ------------HHHHHHHHHHTTEE-CEEE---T-TTEEEEC-CCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             ------------HHHHHHHHHHCCCE-EccC---C-CCEEEEE-CCcCCCHHHHHHHHHHHHHHHhhC
Confidence                        23567778788844 3332   2 4799999 777899999999999999987653

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.88  E-value=3.6e-21  Score=185.68  Aligned_cols=271  Identities=14%  Similarity=0.085  Sum_probs=189.1

Q ss_pred             HHHHHHHHHHhC---CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC
Q psy12303        115 TVVLEKMRQIIG---WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG  191 (480)
Q Consensus       115 ~~~~~~la~~~g---~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~  191 (480)
                      .++++.++++++   .+++++++|+|+|+|+..++.++ .                + .|+++ ++|.++...+...|. 
T Consensus        59 ~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~~-g----------------d-~Vl~~-p~y~~~~~~~~~~g~-  118 (335)
T 1uu1_A           59 EELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF-D----------------R-SVFFP-PTYSCYRIFAKAVGA-  118 (335)
T ss_dssp             HHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHHS-S----------------E-EEECS-SSCHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHHh-C----------------C-cEEEC-CCcHHHHHHHHHcCC-
Confidence            346666888888   77778999999999999888765 2                4 68888 999999999998888 


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                        +++.+|.++++.+|+++|     +      ++++|++++++|++|.+.|.+++.++++.+| ++++|++|+.+... +
T Consensus       119 --~~~~v~~~~~~~~d~~~l-----~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~-~  183 (335)
T 1uu1_A          119 --KFLEVPLTKDLRIPEVNV-----G------EGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGE-S  183 (335)
T ss_dssp             --EEEECCCCTTSCCCCCCC-----C------TTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCC-C
T ss_pred             --eEEEeccCCCCCCCHHHc-----C------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcch-h
Confidence              788899887778888877     2      2889999999999999999999999999999 99999999865321 1


Q ss_pred             cccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCch
Q psy12303        272 KYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIF  350 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l  350 (480)
                      ...  ... ..+.++++.|++|+++.| .++|++++ +++...........|                       ....+
T Consensus       184 ~~~--~~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~-----------------------~~~~~  236 (335)
T 1uu1_A          184 YVD--FLK-KYENLAVIRTFSKAFSLAAQRVGYVVA-SEKFIDAYNRVRLPF-----------------------NVSYV  236 (335)
T ss_dssp             CGG--GGG-TCSSEEEEEESTTTTTCGGGCCEEEEE-CHHHHHHHHHHSCTT-----------------------CSCHH
T ss_pred             HHH--Hhh-hCCCEEEEecchhhcCCcccCeEEEEe-CHHHHHHHHHhcCCC-----------------------CcCHH
Confidence            111  111 124578888999999743 46899887 455544332211111                       01223


Q ss_pred             HHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHH
Q psy12303        351 KLWLQWRAKG-DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILK  429 (480)
Q Consensus       351 ~~~~~l~~~g-~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~  429 (480)
                      ..+++...+. .+.+++..++..++++++.+.|++ . |+++. ++....+.+.+ +. .            +  ..++.
T Consensus       237 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~~~~~~~~~-~~-~------------~--~~~~~  297 (335)
T 1uu1_A          237 SQMFAKVALDHREIFEERTKFIVEERERMKSALRE-M-GYRIT-DSRGNFVFVFM-EK-E------------E--KERLL  297 (335)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBC-CCCSSEEEEEC-CT-H------------H--HHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH-C-CcEEc-CCCCeEEEEEC-CC-C------------C--HHHHH
Confidence            3333333321 346778888899999999999998 5 77653 44433333322 11 0            0  23566


Q ss_pred             HHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        430 GRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       430 ~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      +.|.++|+.+ .+    . .+++|+++ +   +++|+++++++|+++
T Consensus       298 ~~l~~~gi~v-~~----~-~~~iRis~-~---~~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          298 EHLRTKNVAV-RS----F-REGVRITI-G---KREENDMILRELEVF  334 (335)
T ss_dssp             HHHHHHTEEE-EE----E-TTEEEEEC-C---CHHHHHHHHHHHHCC
T ss_pred             HHHHHCCEEE-EE----C-CCeEEEEe-C---CHHHHHHHHHHHHhh
Confidence            7777888544 33    2 46999994 2   478899999999864

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.88  E-value=2.8e-21  Score=188.25  Aligned_cols=296  Identities=14%  Similarity=0.123  Sum_probs=186.9

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCce-EEEecCCCchhHHHH---HHHcC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQL-VMFTSDQCHYSVRSC---AAVCG  189 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~-~vl~~~~~h~s~~~~---~~~~g  189 (480)
                      ..++++++++++|.+.  .++++|||+|+..++.++...              |+. +|+++...|++....   +...|
T Consensus        50 ~~~l~~~la~~~~~~~--~i~~~~g~~a~~~a~~~~~~~--------------g~~~vvi~~~~~~~~~~~~~~~~~~~g  113 (359)
T 3pj0_A           50 IEDFETKIAKILGKQS--AVFFPSGTMAQQIALRIWADR--------------KENRRVAYHPLSHLEIHEQDGLKELQQ  113 (359)
T ss_dssp             HHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHHHH--------------HTCCEEEECTTCHHHHSSTTHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHHHhc--------------CCCcEEEEeccceeeehhcchHHHhcC
Confidence            4456677999999876  477799999999999988763              232 577777777765432   24456


Q ss_pred             CCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcc-ccccChHHH---HHHHHHcCcEEEeeccccc
Q psy12303        190 LGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVL-GAFDPIEEI---ADICQKYNMWLHVDAAWGG  265 (480)
Q Consensus       190 ~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~-G~~~~l~~I---~~i~~~~~~~l~vD~a~~~  265 (480)
                      .   +++.+|. +++.+|+++|+++ .+      ++++|++++++|++ |.+.|.+++   .++|++||+++|+|++|..
T Consensus       114 ~---~~~~v~~-~~~~~d~~~l~~~-~~------~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~  182 (359)
T 3pj0_A          114 I---TPLLLGT-ANQLLTIDDIKSL-RE------PVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLW  182 (359)
T ss_dssp             C---EEEECSC-TTSCCCHHHHHTC-SS------CCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCG
T ss_pred             c---eEEecCC-cCCCcCHHHHHhc-cC------CceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchh
Confidence            6   7788887 5678999999887 22      38899999998888 688775555   9999999999999999875


Q ss_pred             cccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCC
Q psy12303        266 GLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGR  345 (480)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r  345 (480)
                      +...........+.  ..+|+++.++||++++|.+ |++ +.++++.+........+- ..           .++    .
T Consensus       183 ~~~~~~~~~~~~~~--~~~d~~~~s~sK~~~~~~g-g~~-~~~~~l~~~~~~~~~~~~-~~-----------~~~----~  242 (359)
T 3pj0_A          183 EITPFYQKSAEEIC--ALFDSVYVSFYKGIGGIAG-AIL-AGNDDFVQEAKIWKRRYG-GD-----------LIS----L  242 (359)
T ss_dssp             GGHHHHTCCHHHHH--TTCSEEEEESSSTTCCSSC-EEE-EECHHHHHHHHHHHHHTT-CC-----------CSC----C
T ss_pred             cchhhhCCCHHHhh--ccCCEEEEeccccCCCcce-EEE-ECCHHHHHHHHHHHHHhC-CC-----------cch----h
Confidence            54211100000011  2678999999999988755 444 456665544321100000 00           000    0


Q ss_pred             CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe-cCCceeEEEEEeecCccCCCchhhHHHHhhhh
Q psy12303        346 HNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI-LEPEMVNVSFWYLPTRVRNMPHEKRLNILGEI  424 (480)
Q Consensus       346 ~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~-~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~  424 (480)
                      ...+.+...++.     ...+.+++..++++++.+.|++ ++++++. .++..+.+.+++.....           .  .
T Consensus       243 ~~~~~a~~~~l~-----~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~-----------~--~  303 (359)
T 3pj0_A          243 YPYILSADYYFE-----KRIGKMAEYFEAAKGLAERFNS-CSGVKTVPEVPVSNMFHVYFENSAD-----------E--I  303 (359)
T ss_dssp             HHHHHHHHHHHH-----HHGGGHHHHHHHHHHHHHHHHT-STTEEEESSSCSSSEEEEEESSCHH-----------H--H
T ss_pred             HHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHhh-CCCceeeccCCcceEEEEEecCccc-----------h--h
Confidence            001111222222     1234556678889999999999 8999985 34445555554421110           0  0


Q ss_pred             hHHHHHHHHhcccEEEeee--eeCCcccEEEEecc--cCCCCHHHHHHHHHHHHHh
Q psy12303        425 TPILKGRMMQAGTMMVGYQ--PLNDLPNFFRNIIS--SAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       425 ~~~i~~~l~~~g~~~~~~~--~~~~~~~~~R~~~~--~~~~t~~di~~~~~~l~~~  476 (480)
                      ...+.+.|.+.|+.+....  ...+ ..++|+++.  ....+.+++++.+++|.+.
T Consensus       304 ~~~l~~~l~~~GV~v~~g~~~~~~~-~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          304 GAILTKIQDETGVGISGYLQEKSAD-VCAFEVSVGDAFAEIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             HHHHHHHHHHHCEECCSCCEEEETT-EEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcEecCCccccCCC-ceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence            2456788888885543321  1233 578999843  2346889999999988765

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.88  E-value=9.1e-22  Score=193.80  Aligned_cols=285  Identities=12%  Similarity=0.095  Sum_probs=186.6

Q ss_pred             HHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH----HHc
Q psy12303        113 METVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA----AVC  188 (480)
Q Consensus       113 ~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~----~~~  188 (480)
                      ...++++.+++++|.+  ..+++++||+|+..++. ...              ||+ .|+++...|.+....+    +..
T Consensus        56 ~~~~lr~~la~~~g~~--~~i~~~sGt~a~~~al~-~~~--------------~gd-~Vi~~~~~y~~~~~~~~~~~~~~  117 (393)
T 1n8p_A           56 NRENLERAVAALENAQ--YGLAFSSGSATTATILQ-SLP--------------QGS-HAVSIGDVYGGTHRYFTKVANAH  117 (393)
T ss_dssp             HHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHH-TSC--------------SSC-EEEEESSCCHHHHHHHHHTSTTT
T ss_pred             hHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHH-HcC--------------CCC-EEEEeCCCchHHHHHHHHHHHHc
Confidence            3456677799999987  36777777999999987 432              455 6777778888665544    333


Q ss_pred             CCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHc----CcEEEeecccc
Q psy12303        189 GLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY----NMWLHVDAAWG  264 (480)
Q Consensus       189 g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~----~~~l~vD~a~~  264 (480)
                      |.   +++.+|.+     | ++|+++++++      +++|++++++|++|.+.|+++|.++|+++    |+++|+|++|+
T Consensus       118 G~---~v~~v~~~-----d-~~l~~~i~~~------t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~  182 (393)
T 1n8p_A          118 GV---ETSFTNDL-----L-NDLPQLIKEN------TKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFL  182 (393)
T ss_dssp             CS---CCEEESSH-----H-HHHHHHSCSS------EEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTT
T ss_pred             Cc---EEEEeCCC-----h-HHHHHhcccC------ceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCcc
Confidence            44   78888876     6 8888888653      89999999999999999999999999999    99999999999


Q ss_pred             ccccccccccCcccCCCCCCccceeCccccCCCcc-cc-eEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcccc
Q psy12303        265 GGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QC-STIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQ  342 (480)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~-g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  342 (480)
                      .+... +....       ++|+++.|+||+++++. .. |+++.+++............                     
T Consensus       183 ~~~~~-~~~~~-------~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~---------------------  233 (393)
T 1n8p_A          183 SPYIS-NPLNF-------GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA---------------------  233 (393)
T ss_dssp             HHHHC-CGGGG-------TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH---------------------
T ss_pred             ccccC-CHHHc-------CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHh---------------------
Confidence            88653 22223       68999999999998542 25 77776555554433211000                     


Q ss_pred             CCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC-eEEecCC------------------c-eeEEEE
Q psy12303        343 CGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDK-FYLILEP------------------E-MVNVSF  402 (480)
Q Consensus       343 ~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g-~~~~~~~------------------~-~~~v~f  402 (480)
                      .+.......+++.+..  .+.+....++..++++.+.+.|++ .+. +.-+..|                  . .+++.|
T Consensus       234 ~g~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~l~~~L~~-~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~  310 (393)
T 1n8p_A          234 IGAIPSPFDAWLTHRG--LKTLHLRVRQAALSANKIAEFLAA-DKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISF  310 (393)
T ss_dssp             HCCCCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTS-CTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEE
T ss_pred             cCCCCCHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHh-CCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEE
Confidence            0011223445544443  234566677778888899999988 666 5432111                  2 445666


Q ss_pred             EeecCccCCCchhhHHHHhhhhhHHHHHHHHh------cccE---EEeee--ee----------CCc-ccEEEEecccCC
Q psy12303        403 WYLPTRVRNMPHEKRLNILGEITPILKGRMMQ------AGTM---MVGYQ--PL----------NDL-PNFFRNIISSAA  460 (480)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~------~g~~---~~~~~--~~----------~~~-~~~~R~~~~~~~  460 (480)
                      .+....      .+        ...+...+..      .|..   ...+.  ..          .+. .+.+|+| .+..
T Consensus       311 ~l~~~~------~~--------~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS-~g~~  375 (393)
T 1n8p_A          311 RIKGGA------EA--------ASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRIS-VGIE  375 (393)
T ss_dssp             EESSCH------HH--------HHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEE-CCSS
T ss_pred             EeCCcH------HH--------HHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEE-EccC
Confidence            542110      00        1223333322      2211   11100  00          011 4799999 8899


Q ss_pred             CCHHHHHHHHHHHHHhh
Q psy12303        461 VTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       461 ~t~~di~~~~~~l~~~~  477 (480)
                      +++++|+.+.++|+++.
T Consensus       376 ~~~~~i~~l~~al~~~~  392 (393)
T 1n8p_A          376 DTDDLLEDIKQALKQAT  392 (393)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999998764

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.88  E-value=6.6e-21  Score=192.45  Aligned_cols=352  Identities=15%  Similarity=0.160  Sum_probs=195.1

Q ss_pred             CccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhc
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKM  153 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~  153 (480)
                      .|+++..+... +.+. +.+...+......|...+...    ++++++++++|.+  .+++|+|||+||..++.++++..
T Consensus        42 ~ylD~~~~~~~-~~v~-~a~~~~l~~~~~~y~~~~~~~----~l~~~la~~~~~~--~v~~t~~gt~A~~~al~~~~~~~  113 (467)
T 2oqx_A           42 VFIDLLTDSGT-GAVT-QSMQAAMMRGDEAYSGSRSYY----ALAESVKNIFGYQ--YTIPTHQGRGAEQIYIPVLIKKR  113 (467)
T ss_dssp             CSEECSCCSSC-SCCC-HHHHHHTTSCCCCSSSCHHHH----HHHHHHHHHHCCS--EEEEEC--CCSHHHHHHHHHHHH
T ss_pred             eeEecccCCCc-HHHH-HHHHHHhccCcceeccCchhH----HHHHHHHHHhCcC--cEEEcCCcHHHHHHHHHHHhccc
Confidence            57777554443 3333 334444433333454444444    4456688888875  59999999999999999987520


Q ss_pred             CchhHhcCCCccCC-ceEEEecCCCchhHH-HHHHHcCCCCCCeEEe------eCC----CCCCCCHHHHHHHHHHHHHC
Q psy12303        154 FPTYKEKGLSAIKG-QLVMFTSDQCHYSVR-SCAAVCGLGTDNCVEV------PSD----KRGRLIPSELERLVLERKAK  221 (480)
Q Consensus       154 ~~~~~~~g~~~~~g-~~~vl~~~~~h~s~~-~~~~~~g~~~~~v~~v------~~~----~~~~~d~~~L~~~i~~~~~~  221 (480)
                         ....|.   ++ + .|+++ ..|+... ......|.   .++..      +.+    .++.+|+++|++++++..  
T Consensus       114 ---~~~~G~---~~~d-~Ii~~-~~h~~t~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~--  180 (467)
T 2oqx_A          114 ---EQEKGL---DRSK-MVAFS-NYFFDTTQGHSQINGC---TVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG--  180 (467)
T ss_dssp             ---HHHHCC---CTTT-CEEEE-SSCCHHHHHHHHHTTC---EEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC--
T ss_pred             ---cccCCC---Cccc-eEEec-ccccccchhhhhccCc---ceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC--
Confidence               000121   11 4 36666 5775533 33333443   22221      222    356789999999998631  


Q ss_pred             CCccEEEEeccCCCcc-ccc---cChHHHHHHHHHcCcEEEeeccccc-ccc--------ccccccCcccC--CCCCCcc
Q psy12303        222 GDIPFFVNCTSGTTVL-GAF---DPIEEIADICQKYNMWLHVDAAWGG-GLL--------LSKKYRHPRLT--GIERADS  286 (480)
Q Consensus       222 ~~~~~~v~~~~~~~~~-G~~---~~l~~I~~i~~~~~~~l~vD~a~~~-~~~--------~~~~~~~~~~~--~~~~~D~  286 (480)
                      ..++++|++++++|++ |.+   +++++|.++|++||+|+|+|++++. +..        ....... .+.  ..+.+|+
T Consensus       181 ~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~-~~~~~~~~~~d~  259 (467)
T 2oqx_A          181 PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIE-QITRETYKYADM  259 (467)
T ss_dssp             GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHH-HHHHHHGGGCSE
T ss_pred             CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHH-HHhhhhhccCCe
Confidence            1138899999999998 765   4588999999999999999988766 321        1110000 000  0125788


Q ss_pred             ceeCccccCCCcccceEEEEeCc---hhhHhhhcCCcccc-cccccccCcccCCCCccccCCCCCCchHHHHHHHHhc-H
Q psy12303        287 VTWNPHKLMGTLLQCSTIHFKQD---GLLISCNQMSAEYL-FMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG-D  361 (480)
Q Consensus       287 ~~~s~hK~~~~p~~~g~~~~~~~---~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g-~  361 (480)
                      +++++||+++.|.| |+++.++.   +.+....    .+. .....     .       +.+. ..+..+ .++.. + .
T Consensus       260 ~~~s~sK~~g~~~G-g~~~~~~~~~~~~~~~~~----~~~~~~~~~-----~-------~~~~-~~~~~~-~al~~-~l~  319 (467)
T 2oqx_A          260 LAMSAKKDAMVPMG-GLLCMKDDSFFDVYTECR----TLCVVQEGF-----P-------TYGG-LEGGAM-ERLAV-GLY  319 (467)
T ss_dssp             EEEESSSTTCCSSC-EEEEECSGGGHHHHHHHH----HHHHHTTSS-----C-------CCCC-CCHHHH-HHHHH-HHH
T ss_pred             EEEecccccCCCCc-eEEEecChhHHHHHHHHH----HhhhccCCc-----c-------cccc-hhhhHH-HHHHH-hhH
Confidence            89999999987644 55555544   2222211    110 00000     0       0000 111111 12211 1 1


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHH-HhcccEE
Q psy12303        362 EGF-EKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRM-MQAGTMM  439 (480)
Q Consensus       362 ~~~-~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~~~g~~~  439 (480)
                      +.+ ++.+++..++++++.+.|++ . ++++. +.....+.+.+.. ...+.+..+    +.  ...+.+.| .+.|+.+
T Consensus       320 ~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~~----~~--~~~l~~~L~~~~gv~~  389 (467)
T 2oqx_A          320 DGMNLDWLAYRIAQVQYLVDGLEE-I-GVVCQ-QAGGHAAFVDAGK-LLPHIPADQ----FP--AQALACELYKVAGIRA  389 (467)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHH-T-TCCEE-EECSSCEEEEHHH-HSTTSCGGG----CH--HHHHHHHHHHHHCEEC
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHH-C-CCeee-cCCceEEEEechh-hcccCCccc----cc--HHHHHHHHHHhcCcee
Confidence            112 23456667889999999999 6 88776 3333333343211 000111111    10  23556777 6777544


Q ss_pred             Eeeeee-CC-----------cccEEEEecccCC-CCHHHHHHHHHHHHHhhc
Q psy12303        440 VGYQPL-ND-----------LPNFFRNIISSAA-VTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       440 ~~~~~~-~~-----------~~~~~R~~~~~~~-~t~~di~~~~~~l~~~~~  478 (480)
                      ...+.. .+           ..+++|++ ++.. +|++||++++++|+++++
T Consensus       390 ~~~~~~~~~~~~~~g~~~~~~~~~iRl~-~~~~~~t~e~i~~~~~~l~~~l~  440 (467)
T 2oqx_A          390 VEIGSFLLGRDPKTGKQLPCPAELLRLT-IPRATYTQTHMDFIIEAFKHVKE  440 (467)
T ss_dssp             EEESHHHHCBCTTTCSBCCCSCCEEEEC-CCTTTSCHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccCccCeEEEE-ecCCCCCHHHHHHHHHHHHHHHh
Confidence            332210 00           02699999 7777 999999999999998765

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.88  E-value=2.4e-21  Score=191.68  Aligned_cols=342  Identities=9%  Similarity=-0.026  Sum_probs=208.7

Q ss_pred             CCCCCccccccCCCChHHhHHHHHHHHcC-cCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEE--CCChhHHHHH
Q psy12303         70 TGHPMFMNQLSCGLDVVSMAGEWLIATAN-TNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSIL--APGGSISNLY  144 (480)
Q Consensus        70 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~--t~ggt~a~~~  144 (480)
                      .+...|+++...+...+.+. +.+..... .....|....+..++.+.+.+++....|.  ++.++++  |+|||+|+..
T Consensus        33 l~~g~~~d~~~~~~~~~~v~-~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~  111 (401)
T 7aat_A           33 LGVGAYRDDNGKPYVLNCVR-KAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRV  111 (401)
T ss_dssp             CCCCSCCCTTSCCCCCHHHH-HHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHH
T ss_pred             eeeeeEECCCCCEechHHHH-HHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHH
Confidence            44455555554444434343 33333322 23344554455667777777776655553  3668877  9999999999


Q ss_pred             HHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCC--CCCCCCHHHHHHHHHHHHHCC
Q psy12303        145 AFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD--KRGRLIPSELERLVLERKAKG  222 (480)
Q Consensus       145 al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~  222 (480)
                      ++.+++...           .||+ .|+++.++|.++...++..|.   +++.+|.+  +++.+|++++++.+++.   .
T Consensus       112 ~~~~l~~~~-----------~~gd-~Vlv~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~---~  173 (401)
T 7aat_A          112 GANFLQRFF-----------KFSR-DVYLPKPSWGNHTPIFRDAGL---QLQAYRYYDPKTCSLDFTGAMEDISKI---P  173 (401)
T ss_dssp             HHHHHHHHC-----------TTCC-EEEEEESCCTTHHHHHHHTTC---EEEEEECEETTTTEECHHHHHHHHTTS---C
T ss_pred             HHHHHHHhc-----------cCCC-EEEEcCCCchhHHHHHHHcCC---eeEeeeeeccccCccCHHHHHHHHHhC---C
Confidence            988765310           1556 788888999999999999988   78889875  36889999998888652   2


Q ss_pred             CccEEEEeccCCCccccccC---hHHHHHHHHHcCcEEEeeccccccccccc---cccCcccCCCCCCccceeCccccCC
Q psy12303        223 DIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSK---KYRHPRLTGIERADSVTWNPHKLMG  296 (480)
Q Consensus       223 ~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~---~~~~~~~~~~~~~D~~~~s~hK~~~  296 (480)
                      .++++|++++++||||.+.+   +++|+++|++||+++++|++|..+.....   ......+.....-.+++.|++|.++
T Consensus       174 ~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~  253 (401)
T 7aat_A          174 EKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMG  253 (401)
T ss_dssp             TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC
T ss_pred             CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccc
Confidence            34889999999999997754   78899999999999999999987654211   0000001111134567889999998


Q ss_pred             Cc-ccceEEEEe--CchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--c------HHHHH
Q psy12303        297 TL-LQCSTIHFK--QDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--G------DEGFE  365 (480)
Q Consensus       297 ~p-~~~g~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g------~~~~~  365 (480)
                      .| ..+|++++.  ++..................               .+  ..+.....+...+  +      .+.++
T Consensus       254 ~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~  316 (401)
T 7aat_A          254 LYGERAGAFTVICRDAEEAKRVESQLKILIRPMY---------------SN--PPMNGARIASLILNTPELRKEWLVEVK  316 (401)
T ss_dssp             CGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHH---------------SS--CCHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             cccCceEEEEEEeCCHHHHHHHHHHHHHHHHhcc---------------CC--CChHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            54 458888862  33321111000000000000               00  1122222222222  1      34467


Q ss_pred             HHHHHHHHHHHHHHHHHhcCC---CCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEee
Q psy12303        366 KQIDRLMELAEYMVKKIKSMP---DKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGY  442 (480)
Q Consensus       366 ~~~~~~~~l~~~l~~~l~~~~---~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~  442 (480)
                      +..++..++++++.+.|++ .   +++++. +|..+.++|...    .              .+.+...+.+.| +++.+
T Consensus       317 ~~~~~~~~~r~~l~~~L~~-~~~~~~~~~~-~~~~~~~~~~~~----~--------------~~~~~~ll~~~g-i~v~~  375 (401)
T 7aat_A          317 GMADRIISMRTQLVSNLKK-EGSSHNWQHI-TDQIGMFCFTGL----K--------------PEQVERLTKEFS-IYMTK  375 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TTCCSCCHHH-HHCCSSEEECCC----C--------------HHHHHHHHHHHC-EECCT
T ss_pred             HHHHHHHHHHHHHHHHHHh-cCCCCCCcee-cCCcceEEecCC----C--------------HHHHHHHHHhCC-EeccC
Confidence            7788888999999999988 4   235442 455666665211    1              112222334556 33321


Q ss_pred             eeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        443 QPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       443 ~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                              .+|+++ +.. ++++|+++++.|+++++
T Consensus       376 --------~~Ris~-~~~-~~~~i~~~~~~l~~~~~  401 (401)
T 7aat_A          376 --------DGRISV-AGV-ASSNVGYLAHAIHQVTK  401 (401)
T ss_dssp             --------TCEEEG-GGC-CTTTHHHHHHHHHHHHC
T ss_pred             --------CCeEEe-ccC-ChhhHHHHHHHHHHHhC
Confidence                    369994 443 44559999999998753

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.88  E-value=7.7e-21  Score=190.07  Aligned_cols=305  Identities=10%  Similarity=0.050  Sum_probs=189.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC-ceEEEecCCCchhHHHHHHHcCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG-QLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g-~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      ....++.+++++++|.  +.+++++|||+|+..++++++....   ..+|.  .|| +.+|+.....|.+...++...|.
T Consensus       118 ~~~~~l~~~la~~~g~--~~v~~~~sGseA~~~al~~~~~~~~---~~~g~--~~g~~~vi~~~~~yhg~~~~~~~~~g~  190 (439)
T 2oat_A          118 NVLGEYEEYITKLFNY--HKVLPMNTGVEAGETACKLARKWGY---TVKGI--QKYKAKIVFAAGNFWGRTLSAISSSTD  190 (439)
T ss_dssp             SSHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHHHHH---HTTCC--CTTCCEEEEETTCCCCSSHHHHTTCCC
T ss_pred             HHHHHHHHHHHHhcCC--CEEEEeCCHHHHHHHHHHHHHHHhh---hccCC--CCCCCeEEEEcCCCCCCCHhHhhcCCC
Confidence            3445667778888875  3599999999999999999874210   01121  133 43555555667776666665441


Q ss_pred             -------CC--CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccccc----ChHHHHHHHHHcCcEE
Q psy12303        191 -------GT--DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD----PIEEIADICQKYNMWL  257 (480)
Q Consensus       191 -------~~--~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~----~l~~I~~i~~~~~~~l  257 (480)
                             ++  ..+..+|.+     |+++|+++++.     .++++|+++..++++|.+.    ++++|.++|++||+++
T Consensus       191 ~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gill  260 (439)
T 2oat_A          191 PTSYDGFGPFMPGFDIIPYN-----DLPALERALQD-----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLF  260 (439)
T ss_dssp             HHHHTTSCSCCTTEEEECSS-----CHHHHHHHTTS-----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEE
T ss_pred             hhcccCCCCCCCCeEEeCCC-----CHHHHHHHhCC-----CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence                   10  266777764     89999999852     1278888888878889765    6999999999999999


Q ss_pred             EeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccCC
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDT  336 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  336 (480)
                      |+|++|.++......... ...++ .+|+++  ++|+++++ .+.|++++++ +..+....   ..  .          .
T Consensus       261 I~DEv~~g~g~~g~~~~~-~~~~~-~~Di~t--~sK~l~~G~~~~G~v~~~~-~~~~~l~~---~~--~----------~  320 (439)
T 2oat_A          261 IADEIQTGLARTGRWLAV-DYENV-RPDIVL--LGKALSGGLYPVSAVLCDD-DIMLTIKP---GE--H----------G  320 (439)
T ss_dssp             EEECTTTTTTTTSSSSGG-GGGTC-CCSEEE--ECGGGGTTSSCCEEEEECH-HHHTTSCT---TS--S----------C
T ss_pred             EEeccccCCccCCcchhH-HHhCC-CCcEEE--ecccccCCCCCeEEEEECH-HHHhccCC---CC--c----------c
Confidence            999999764332221111 12233 568774  67999876 6789988764 44332211   00  0          0


Q ss_pred             CCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe--cCCceeEEEEEeecCccCCCch
Q psy12303        337 GDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI--LEPEMVNVSFWYLPTRVRNMPH  414 (480)
Q Consensus       337 ~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~--~~~~~~~v~f~~~~~~~~~~~~  414 (480)
                      .++   .+......++.++++.+..   ++..++..++++++.+.|++ + ++.++  .++...++.+.+....  +.+ 
T Consensus       321 ~t~---~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~-l-~~~~~~~~~~~g~~~~v~l~~~~--~~~-  389 (439)
T 2oat_A          321 STY---GGNPLGCRVAIAALEVLEE---ENLAENADKLGIILRNELMK-L-PSDVVTAVRGKGLLNAIVIKETK--DWD-  389 (439)
T ss_dssp             CSS---TTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTT-S-CTTTEEEEEEETTEEEEEECCCS--SCC-
T ss_pred             cCC---CcCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHH-h-cCCCcEEEEeeeeEEEEEEecCc--cHH-
Confidence            000   1111122233334443322   35678888999999999988 4 33211  1223334444332110  000 


Q ss_pred             hhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        415 EKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       415 ~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                                ..++.+.|.++|++ +.+   .+ .+++|++ ++..+|++||++++++|+++++++
T Consensus       390 ----------~~~l~~~l~~~Gv~-v~~---~~-~~~iRi~-~~~~~t~e~i~~~l~~l~~~l~~~  439 (439)
T 2oat_A          390 ----------AWKVCLRLRDNGLL-AKP---TH-GDIIRFA-PPLVIKEDELRESIEIINKTILSF  439 (439)
T ss_dssp             ----------HHHHHHHHHHTTEE-CCB---SS-SSEEEEC-CCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             ----------HHHHHHHHHHCCeE-Eec---CC-CCEEEEE-CccCCCHHHHHHHHHHHHHHHHhC
Confidence                      23567788888844 333   12 4799999 788899999999999999987654

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.88  E-value=1e-21  Score=195.13  Aligned_cols=325  Identities=10%  Similarity=-0.006  Sum_probs=202.7

Q ss_pred             HHHHHHHHc--CcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEE--CCChhHHHHHHHHHHHHhcCchhHhcCC
Q psy12303         89 AGEWLIATA--NTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSIL--APGGSISNLYAFLAARHKMFPTYKEKGL  162 (480)
Q Consensus        89 ~~~~l~~~~--~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~--t~ggt~a~~~al~~~~~~~~~~~~~~g~  162 (480)
                      +.+.+....  ......|...++..++++.+.+++....|.  +++++++  |+|||+|+..++..++..          
T Consensus        53 v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~----------  122 (412)
T 1ajs_A           53 VRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARW----------  122 (412)
T ss_dssp             HHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHh----------
Confidence            335555544  222334544445556666655555333332  4568999  999999999997654321          


Q ss_pred             CccCC-----ceEEEecCCCchhHHHHHHHcCCCCCC-eEEeeCC--CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCC
Q psy12303        163 SAIKG-----QLVMFTSDQCHYSVRSCAAVCGLGTDN-CVEVPSD--KRGRLIPSELERLVLERKAKGDIPFFVNCTSGT  234 (480)
Q Consensus       163 ~~~~g-----~~~vl~~~~~h~s~~~~~~~~g~~~~~-v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~  234 (480)
                        .||     + .|+++.++|+++...+...|.   + ++.+|.+  +++.+|+++|++++++.   +.++++|++++++
T Consensus       123 --~~g~~~~~d-~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~~~~p~  193 (412)
T 1ajs_A          123 --YNGTNNKDT-PVYVSSPTWENHNGVFTTAGF---KDIRSYRYWDTEKRGLDLQGFLSDLENA---PEFSIFVLHACAH  193 (412)
T ss_dssp             --SSSSSCCCS-CEEEEESCCTHHHHHHHHTTC---SCEEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEEESSSC
T ss_pred             --CcCcCCCCC-eEEEcCCCcHHHHHHHHHcCC---ceeEEEeeecCCCCccCHHHHHHHHHhC---CCCcEEEEECCCC
Confidence              044     4 678888899999999999887   7 8888884  56789999999999752   2237888899999


Q ss_pred             CccccccC---hHHHHHHHHHcCcEEEeecccccccccc---ccccCcccCCCCCCccceeCccccCCC-cccceEEEEe
Q psy12303        235 TVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLS---KKYRHPRLTGIERADSVTWNPHKLMGT-LLQCSTIHFK  307 (480)
Q Consensus       235 ~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~---~~~~~~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~  307 (480)
                      |+||.+.+   +++|.++|++||+++|+|++|.++....   +......+.....-++++.+++|.++. +.++|++++.
T Consensus       194 nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~  273 (412)
T 1ajs_A          194 NPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVV  273 (412)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcceEEEEEe
Confidence            99999955   6789999999999999999998765421   100000011111223778899999986 4568999872


Q ss_pred             --CchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--c------HHHHHHHHHHHHHHHHH
Q psy12303        308 --QDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--G------DEGFEKQIDRLMELAEY  377 (480)
Q Consensus       308 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g------~~~~~~~~~~~~~l~~~  377 (480)
                        +++.+.........+....              ..+   ...+..+++...+  +      .+.+++..++..+++++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~--------------~~~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (412)
T 1ajs_A          274 AKEPDSILRVLSQMQKIVRVT--------------WSN---PPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSE  336 (412)
T ss_dssp             CSSHHHHHHHHHHHHHHHHTT--------------TSS---CCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhcc--------------cCC---CChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHH
Confidence              4442221100000000000              000   1222333332222  1      23667888899999999


Q ss_pred             HHHHHhcCCC---CeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEE
Q psy12303        378 MVKKIKSMPD---KFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRN  454 (480)
Q Consensus       378 l~~~l~~~~~---g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~  454 (480)
                      +.+.|++ ..   +++++ .|..+.+.|...    .              ...+...+.+.|+ .+.+        .+|+
T Consensus       337 l~~~L~~-~~~~~~~~~~-~~~~~~~~~~~~----~--------------~~~~~~~l~~~gv-~v~~--------~~Ri  387 (412)
T 1ajs_A          337 LRARLEA-LKTPGTWNHI-TDQIGMFSFTGL----N--------------PKQVEYLINQKHI-YLLP--------SGRI  387 (412)
T ss_dssp             HHHHHHH-TTCSSCCHHH-HHCCSSEEECCC----C--------------HHHHHHHHHTTCE-ECCT--------TSEE
T ss_pred             HHHHHHh-hCCCCCeeEE-cCCCceEEEeCC----C--------------HHHHHHHHHhCCE-EecC--------CcEE
Confidence            9999998 53   36653 355555555211    1              1123344556673 3332        2699


Q ss_pred             ecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        455 IISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       455 ~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      ++. . .+++++++++++|+++++++
T Consensus       388 s~~-~-~~~~~i~~~~~~l~~~l~~~  411 (412)
T 1ajs_A          388 NMC-G-LTTKNLDYVATSIHEAVTKI  411 (412)
T ss_dssp             EGG-G-CCTTTHHHHHHHHHHHHHHC
T ss_pred             Eee-e-CCHHHHHHHHHHHHHHHHhc
Confidence            944 2 48999999999999887653

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.87  E-value=2.3e-20  Score=188.04  Aligned_cols=324  Identities=15%  Similarity=0.096  Sum_probs=195.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC-ceEEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG-QLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g-~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .....++.+.++++++.+...++|++|||+||..|+++++...    ...|.   |+ +.+|+.....|.....+....+
T Consensus        98 ~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~----~~~g~---~~~~~ii~~~~~yHg~t~~~~~~~~  170 (472)
T 3hmu_A           98 HVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYW----QNKGQ---PEKTVIISRKNAYHGSTVASSALGG  170 (472)
T ss_dssp             CHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHH----HHTTC---TTCCEEEEETTCCCCSSHHHHHHSC
T ss_pred             CHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHH----HhcCC---CCCCEEEEEcCcCCCccHHhhhccC
Confidence            4556677888999987765689999999999999999998741    22232   22 3344455555655544444333


Q ss_pred             C--------CCCCeEEeeCCC-----CCCCC--------HHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hH
Q psy12303        190 L--------GTDNCVEVPSDK-----RGRLI--------PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IE  244 (480)
Q Consensus       190 ~--------~~~~v~~v~~~~-----~~~~d--------~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~  244 (480)
                      .        ....+..+|...     ++ .|        +++|++++++..  ...+++|+++..+++.|.+.+    ++
T Consensus       171 ~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~epv~~~gG~~~~~~~~l~  247 (472)
T 3hmu_A          171 MAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELG--ENRVAAFIAEPVQGAGGVIVAPDSYWP  247 (472)
T ss_dssp             CHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTCBCCCTTHHH
T ss_pred             ChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCcccCCHHHHH
Confidence            1        111455666432     12 34        788888887431  123789999999899999887    99


Q ss_pred             HHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccc
Q psy12303        245 EIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYL  323 (480)
Q Consensus       245 ~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l  323 (480)
                      +|.++|++||+++|+|++|.++......+.. ...++ ..|++++  .|.++++ .+.|+++.+ +++.+... .  ..+
T Consensus       248 ~l~~l~~~~gillI~DEv~~gfgr~G~~~a~-~~~~v-~pdi~t~--sK~l~gg~~plG~v~~~-~~i~~~~~-~--~~~  319 (472)
T 3hmu_A          248 EIQRICDKYDILLIADEVICGFGRTGNWFGT-QTMGI-RPHIMTI--AKGLSSGYAPIGGSIVC-DEVAHVIG-K--DEF  319 (472)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTTTSSSCHH-HHHTC-CCSEEEE--CGGGTTTSSCCEEEEEE-HHHHHHHT-T--SCB
T ss_pred             HHHHHHHHcCCEEEEEccccCCcccCccchh-HHhCC-CCceeee--chhhhcCCcceEEEEEC-HHHHHhcc-c--CCc
Confidence            9999999999999999999976443322211 22234 5788875  4998876 588988875 44444331 1  111


Q ss_pred             cccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHH-HHHHHHHHHHhcC--CCCeEEecCCceeEE
Q psy12303        324 FMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLM-ELAEYMVKKIKSM--PDKFYLILEPEMVNV  400 (480)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~-~l~~~l~~~l~~~--~~g~~~~~~~~~~~v  400 (480)
                      .+.                .+.....+++.+++..+..-.-+++.++.. ++.+++++.|++.  .+.+..+ ++...++
T Consensus       320 ~~~----------------~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~G~~~  382 (472)
T 3hmu_A          320 NHG----------------YTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEA-KIVGMMA  382 (472)
T ss_dssp             CCC----------------CTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGGGSTTEEEE-EEETTEE
T ss_pred             ccc----------------CCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecCceE
Confidence            010                011123344444444332111134556666 6777777777550  3445443 2344455


Q ss_pred             EEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        401 SFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       401 ~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+.+.+.......   +..........+.+.|.++|+++...      .+++|++ ++..+|+++|++++++|++++++
T Consensus       383 ~i~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~Gv~v~~~------g~~iRi~-p~~~~t~e~i~~~l~~l~~~l~~  451 (472)
T 3hmu_A          383 SIALTPNKASRAK---FASEPGTIGYICRERCFANNLIMRHV------GDRMIIS-PPLVITPAEIDEMFVRIRKSLDE  451 (472)
T ss_dssp             EEEECSCGGGTCC---BSSCTTHHHHHHHHHHHHTTBCCEEE------TTEEEEC-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCcccccc---ccchhHHHHHHHHHHHHHCCcEEEec------CCEEEEE-CCCCCCHHHHHHHHHHHHHHHHH
Confidence            5544322100000   00000011346778888999655443      2699999 88999999999999999987653

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.87  E-value=4.7e-22  Score=197.53  Aligned_cols=353  Identities=10%  Similarity=0.004  Sum_probs=215.1

Q ss_pred             HHHHHHHHhhccC-CccCCCCCccccccCCCChHHhHHHHHHH-HcCc-CCcchhcChhhHHHHHHHHHHHHHHhCC--C
Q psy12303         54 QKLIDDCFTTLKY-QVRTGHPMFMNQLSCGLDVVSMAGEWLIA-TANT-NMFTYEIAPVFILMETVVLEKMRQIIGW--Q  128 (480)
Q Consensus        54 ~~i~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~l~~-~~~~-~~~~~~~~~~~~~~e~~~~~~la~~~g~--~  128 (480)
                      ..+.+.+++.-.. -+......|+++......++.+. +.+.. .+.. ....|....+..++.+.+.+++....|.  +
T Consensus        17 ~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~-~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~   95 (412)
T 1yaa_A           17 FGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVK-AAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQ   95 (412)
T ss_dssp             HHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHH-HHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHhcCCCCCeEEEeeeeeeCCCCCCCCcHHHH-HHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCC
Confidence            3445555433111 12345555555543333444444 55555 4432 2234544455667777766666554442  4


Q ss_pred             CCCeEE--CCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeC-CC-CC
Q psy12303        129 GGDSIL--APGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPS-DK-RG  204 (480)
Q Consensus       129 ~~~~~~--t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~-~~-~~  204 (480)
                      ++++++  |+|||+|+..++..++..            .||+ .|+++.++|+++...++..|.   +++.+|. ++ ++
T Consensus        96 ~~~i~~~~t~g~~~a~~~~~~~~~~~------------~~gd-~Vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~  159 (412)
T 1yaa_A           96 EDRVISVQSLSGTGALHISAKFFSKF------------FPDK-LVYLSKPTWANHMAIFENQGL---KTATYPYWANETK  159 (412)
T ss_dssp             TTCEEEEEEEHHHHHHHHHHHHHHHH------------CTTC-CEEEEESCCTTHHHHHHTTTC---CEEEEECEETTTT
T ss_pred             cceEEEEeccchHhHHHHHHHHHHHh------------CCCC-EEEEeCCCCccHHHHHHHcCc---eEEEEeeecCCCC
Confidence            568999  999999999886544321            0445 678888899999999998887   8888988 43 67


Q ss_pred             CCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCcEEEeecccccccccc---ccccCccc
Q psy12303        205 RLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLS---KKYRHPRL  278 (480)
Q Consensus       205 ~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~---~~~~~~~~  278 (480)
                      .+|+++|++++++.   ...+.++++++++||||.+.+   +++|.++|++||+++++|++|+.+....   +......+
T Consensus       160 ~~d~~~l~~~l~~~---~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  236 (412)
T 1yaa_A          160 SLDLNGFLNAIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLG  236 (412)
T ss_dssp             EECHHHHHHHHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHH
T ss_pred             ccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHH
Confidence            89999999999753   112566677999999999965   6678999999999999999997654321   10000001


Q ss_pred             CCCCC---CccceeCccccCCC-cccceEEE--E----eCch----hhHhhhcC-CcccccccccccCcccCCCCccccC
Q psy12303        279 TGIER---ADSVTWNPHKLMGT-LLQCSTIH--F----KQDG----LLISCNQM-SAEYLFMQDKLYDVRYDTGDKVIQC  343 (480)
Q Consensus       279 ~~~~~---~D~~~~s~hK~~~~-p~~~g~~~--~----~~~~----~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~  343 (480)
                      .....   -++++.|++|.++. +.++|+++  .    +++.    +....... ...+.                   +
T Consensus       237 ~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-------------------~  297 (412)
T 1yaa_A          237 VEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVS-------------------N  297 (412)
T ss_dssp             HHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTS-------------------S
T ss_pred             HhcCCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccC-------------------C
Confidence            10101   35678899999985 34578887  4    1443    33322110 00000                   0


Q ss_pred             CCCCCchHHHHHHHHh--c------HHHHHHHHHHHHHHHHHHHHHHhcCCC---CeEEecCCceeEEEEEeecCccCCC
Q psy12303        344 GRHNDIFKLWLQWRAK--G------DEGFEKQIDRLMELAEYMVKKIKSMPD---KFYLILEPEMVNVSFWYLPTRVRNM  412 (480)
Q Consensus       344 ~r~~~~l~~~~~l~~~--g------~~~~~~~~~~~~~l~~~l~~~l~~~~~---g~~~~~~~~~~~v~f~~~~~~~~~~  412 (480)
                         ...+...++...+  +      .+.++++.++..++++++.+.|++ ..   ++++. .|..+.++|.    .+.  
T Consensus       298 ---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~-~~~~~~~~~~----~~~--  366 (412)
T 1yaa_A          298 ---PPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVK-LGTPGNWDHI-VNQCGMFSFT----GLT--  366 (412)
T ss_dssp             ---CCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCSSCCTHH-HHCCSSEEEC----CCC--
T ss_pred             ---CChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCeeee-ccCceEEEee----CCC--
Confidence               1222222222222  1      246788888899999999999988 54   36654 4555555552    111  


Q ss_pred             chhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        413 PHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       413 ~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                                  ...+...+.+.|+ .+.+        ++|+++. . .+++++++++++|+++++.
T Consensus       367 ------------~~~~~~~l~~~gi-~v~~--------~~Ris~~-~-~~~~~i~~~~~~l~~~~~~  410 (412)
T 1yaa_A          367 ------------PQMVKRLEETHAV-YLVA--------SGRASIA-G-LNQGNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             ------------HHHHHHHHHHHCE-ECCT--------TSEEEGG-G-CCTTTHHHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHhCCE-Eecc--------CcEEEEc-c-CCHhHHHHHHHHHHHHHHh
Confidence                        1234334445663 3332        5799944 3 5899999999999988764

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.87  E-value=6.6e-22  Score=198.21  Aligned_cols=161  Identities=12%  Similarity=0.057  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH----HHc
Q psy12303        113 METVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA----AVC  188 (480)
Q Consensus       113 ~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~----~~~  188 (480)
                      ..+++++++++++|.+  ++++++||++|+..++. ..              .||+ .|+++...|.++...+    ...
T Consensus       134 ~~~~l~~~la~~~g~~--~~i~~~sGt~al~~~l~-~~--------------~~Gd-~Vi~~~~~y~~~~~~~~~~~~~~  195 (464)
T 1ibj_A          134 TRDALESLLAKLDKAD--RAFCFTSGMAALSAVTH-LI--------------KNGE-EIVAGDDVYGGSDRLLSQVVPRS  195 (464)
T ss_dssp             HHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHT-TS--------------CTTC-EEEEESSCCHHHHHHHHHTSGGG
T ss_pred             HHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHH-Hh--------------CCCC-EEEEECCCchhHHHHHHHHHHHc
Confidence            5667889999999986  57888999998876653 21              1556 7888888998887653    344


Q ss_pred             CCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccc
Q psy12303        189 GLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLL  268 (480)
Q Consensus       189 g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~  268 (480)
                      |.   +++.+|.+     |+++|+++++++      +++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+..
T Consensus       196 G~---~v~~v~~~-----d~~~l~~~i~~~------tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~  261 (464)
T 1ibj_A          196 GV---VVKRVNTT-----KLDEVAAAIGPQ------TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVL  261 (464)
T ss_dssp             TC---EEEEECTT-----SHHHHHHHCCSS------EEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTT
T ss_pred             CC---EEEEeCCC-----CHHHHHHHhccC------ceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCccccc
Confidence            55   78888875     899999988754      89999999999999999999999999999999999999987643


Q ss_pred             ccccccCcccCCCCCCccceeCccccCCCcccc--eEEEEeCchhhH
Q psy12303        269 LSKKYRHPRLTGIERADSVTWNPHKLMGTLLQC--STIHFKQDGLLI  313 (480)
Q Consensus       269 ~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~--g~~~~~~~~~~~  313 (480)
                      ..+. ..       ++|+++.|+||++++|.|+  |+++++++.+..
T Consensus       262 ~~~~-~~-------~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~  300 (464)
T 1ibj_A          262 SRPL-EL-------GADIVMHSATKFIAGHSDVMAGVLAVKGEKLAK  300 (464)
T ss_dssp             CCGG-GT-------TCSEEEEETTTTTTCSSCCCCEEEEECSHHHHH
T ss_pred             CChh-hc-------CCEEEEECCcccccCCCCCcEEEEEEChHHHHH
Confidence            2221 12       7899999999999987654  888887655443

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.87  E-value=3e-20  Score=187.05  Aligned_cols=324  Identities=14%  Similarity=0.090  Sum_probs=190.0

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC-ceEEEecCCCchhHHHHHHHc
Q psy12303        110 FILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG-QLVMFTSDQCHYSVRSCAAVC  188 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g-~~~vl~~~~~h~s~~~~~~~~  188 (480)
                      ......+++++++++++.+...++|++|||+|+..++++++...    ...|.   |+ +.+|+.....|.....+....
T Consensus        92 ~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~----~~~g~---~~~~~vi~~~~~yhg~~~~~~~~~  164 (459)
T 4a6r_A           92 THPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYW----DVQGK---PEKKTLIGRWNGYHGSTIGGASLG  164 (459)
T ss_dssp             CCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHH----HHTTC---TTCCEEEEETTCCCCSSHHHHHHS
T ss_pred             CCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHH----HhcCC---CCCCEEEEECCCcCCccHHHHhhc
Confidence            34666788899999998776789999999999999999998731    22232   22 434444555555554444443


Q ss_pred             CCCC---------CCeEEeeCCC-----CCCCC--------HHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----
Q psy12303        189 GLGT---------DNCVEVPSDK-----RGRLI--------PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----  242 (480)
Q Consensus       189 g~~~---------~~v~~v~~~~-----~~~~d--------~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----  242 (480)
                      +...         ..+..++...     ++ +|        +++|++++++..  ...+++|+++..+++.|.+.+    
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~--~~~~~~vi~ep~~~~~G~~~~~~~~  241 (459)
T 4a6r_A          165 GMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIG--ADKVAAFVGEPIQGAGGVIVPPATY  241 (459)
T ss_dssp             CCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTCBCCCTTH
T ss_pred             CChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcC--CCCEEEEEECCccCCCCcccCCHHH
Confidence            3211         1344555322     12 45        788888887521  123788888888888888877    


Q ss_pred             hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcc
Q psy12303        243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAE  321 (480)
Q Consensus       243 l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~  321 (480)
                      +++|.++|++||+++|+|++|.++......+.. ...++ ..|++++  .|.++++ .++|+++.+ +++.+..... ..
T Consensus       242 l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~-~~~~~-~pdi~t~--sK~l~gg~~~lg~v~~~-~~i~~~~~~~-~~  315 (459)
T 4a6r_A          242 WPEIERICRKYDVLLVADEVICGFGRTGEWFGH-QHFGF-QPDLFTA--AKGLSSGYLPIGAVFVG-KRVAEGLIAG-GD  315 (459)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHH-HHHTC-CCSEEEE--CGGGGTTSSCCEEEEEC-HHHHHHHHHH-CT
T ss_pred             HHHHHHHHHHcCCEEEEeccccCCCcccccchH-hhcCC-CCCeeeh--hhhhcCCCCCccceeeC-HHHHHHhhcC-CC
Confidence            999999999999999999999876443222111 12233 5688775  4988766 588988864 4444433210 00


Q ss_pred             cccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHH-HHHHHHH----HHHhcCCCCeEEecCCc
Q psy12303        322 YLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLM-ELAEYMV----KKIKSMPDKFYLILEPE  396 (480)
Q Consensus       322 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~-~l~~~l~----~~l~~~~~g~~~~~~~~  396 (480)
                      +....                 +.....+...+++..+..-.-++..++.. ++.++++    +.|.+ .+.+..+ ++.
T Consensus       316 ~~~~~-----------------t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~-~~~  376 (459)
T 4a6r_A          316 FNHGF-----------------TYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSR-FEHVDDV-RGV  376 (459)
T ss_dssp             THHHH-----------------HHCSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTT-CTTEEEE-EEE
T ss_pred             cccCC-----------------CCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEE-EEE
Confidence            00000                 00012333333333321100123344444 4444444    44455 5666554 344


Q ss_pred             eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        397 MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       397 ~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      ...+.+.+.......... ..   -.....++.+.+.++|+++...      .+++|++ ++..+|++++++++++|+++
T Consensus       377 g~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~l~~~Gv~v~~~------g~~iRi~-~~~~~t~e~i~~~l~~l~~~  445 (459)
T 4a6r_A          377 GMVQAFTLVKNKAKRELF-PD---FGEIGTLCRDIFFRNNLIMRAC------GDHIVSA-PPLVMTRAEVDEMLAVAERC  445 (459)
T ss_dssp             TTEEEEEECSBTTTTBCC-SS---TTHHHHHHHHHHHHTTEECEEE------TTEEEEC-CCTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEecCccccccc-cc---hHHHHHHHHHHHHHCCeEEecC------CCEEEEE-CCCCCCHHHHHHHHHHHHHH
Confidence            444455443221000000 00   0011346778888898554433      2699999 88999999999999999987


Q ss_pred             hcc
Q psy12303        477 GHD  479 (480)
Q Consensus       477 ~~~  479 (480)
                      +++
T Consensus       446 l~~  448 (459)
T 4a6r_A          446 LEE  448 (459)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.87  E-value=1.4e-21  Score=193.31  Aligned_cols=303  Identities=11%  Similarity=-0.017  Sum_probs=183.7

Q ss_pred             chhcChhhHHHHHHHHHHHHHH--hC-CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCch
Q psy12303        103 TYEIAPVFILMETVVLEKMRQI--IG-WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHY  179 (480)
Q Consensus       103 ~~~~~~~~~~~e~~~~~~la~~--~g-~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~  179 (480)
                      .|...++..++++.    ++++  .| .+++++++|+|+++++..++.. ..              ||+ .|++..++|+
T Consensus        70 ~y~~~~g~~~lr~~----la~~l~~g~~~~~~v~~~~G~~~al~~~~~~-~~--------------~gd-~Vl~~~p~y~  129 (400)
T 3asa_A           70 GYGPDFGLPALRQK----LSEDFYRGFVDAKEIFISDGAKVDLFRLLSF-FG--------------PNQ-TVAIQDPSYP  129 (400)
T ss_dssp             CCCCTTCCHHHHHH----HHHTTSTTSSCGGGEEEESCHHHHHHHHHHH-HC--------------SSC-EEEEEESCCH
T ss_pred             CCCCCCCCHHHHHH----HHHHHHcCCCCHHHEEEccChHHHHHHHHHH-cC--------------CCC-EEEECCCCcH
Confidence            34333344455544    5665  57 6667899999999998875432 22              445 7888888999


Q ss_pred             hHHHHHHHcCCCCCC-eEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCc
Q psy12303        180 SVRSCAAVCGLGTDN-CVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNM  255 (480)
Q Consensus       180 s~~~~~~~~g~~~~~-v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~  255 (480)
                      ++..++...|.   + ++.+|.++++.++.+ +++.        .++++|++++++||||.+.|   +++|.++|+++|+
T Consensus       130 ~~~~~~~~~g~---~~~~~~~~~~~~~~~~~-l~~~--------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~  197 (400)
T 3asa_A          130 AYLDIARLTGA---KEIIALPCLQENAFFPE-FPED--------THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEI  197 (400)
T ss_dssp             HHHHHHHHTTC---SEEEEEECCGGGTTCCC-CCTT--------CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCC---cceEecccchhcCcccC-hhhc--------cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCC
Confidence            99999988887   7 888998754322221 2211        23788999999999999987   6678899999999


Q ss_pred             EEEeeccccccccccccccCcccCCCC---CCccceeCccccCC-CcccceEEEEeCchh------hHhhhcCCcccccc
Q psy12303        256 WLHVDAAWGGGLLLSKKYRHPRLTGIE---RADSVTWNPHKLMG-TLLQCSTIHFKQDGL------LISCNQMSAEYLFM  325 (480)
Q Consensus       256 ~l~vD~a~~~~~~~~~~~~~~~~~~~~---~~D~~~~s~hK~~~-~p~~~g~~~~~~~~~------~~~~~~~~~~~l~~  325 (480)
                      ++++|++|+.+...... .. .+..++   +.++++.+++|+++ .+.++|++++++...      +............ 
T Consensus       198 ~li~De~~~~~~~~~~~-~~-~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  274 (400)
T 3asa_A          198 LILFDAAYSTFISDPSL-PK-SIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTF-  274 (400)
T ss_dssp             EEEEECTTGGGCCCTTS-CS-SGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHC-
T ss_pred             EEEEEchhhhhhcCCCC-CC-chhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhccchhhhHHHHHHHHhccCc-
Confidence            99999999965432110 01 111221   23477889999997 445689988755431      2211100000000 


Q ss_pred             cccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEee
Q psy12303        326 QDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYL  405 (480)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~  405 (480)
                                       .+  ...+...++...+....+++..++..++++++.+.|++ . ++++..+.....+.+.+.
T Consensus       275 -----------------~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~  333 (400)
T 3asa_A          275 -----------------NG--ASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLA-T-GFEVFGGEHAPYLWVKPT  333 (400)
T ss_dssp             -----------------CC--CCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH-T-TCEEEECSSSSEEEEECC
T ss_pred             -----------------cC--CChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH-C-CCeeeCCCCceEEEEecc
Confidence                             00  12222223323221114667778888999999999999 5 888764333333433313


Q ss_pred             cCccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeCC--cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        406 PTRVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPLND--LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       406 ~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~~--~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +....              ..++.+.|.++ |+. +.++...+  ..+++|++ .  .+++++|++++++|++++++
T Consensus       334 ~~~~~--------------~~~~~~~l~~~~gv~-v~~g~~f~~~~~~~iRis-~--~~~~e~i~~~l~~l~~~~~~  392 (400)
T 3asa_A          334 QANIS--------------DRDLFDFFLREYHIA-ITPGIGFGRSGSGFVRFS-S--LGKREDILAACERLQMAPAL  392 (400)
T ss_dssp             CTTCC--------------TTTHHHHHHHHHSEE-CEEGGGGCGGGTTCEEEE-C--CSCHHHHHHHHHHHHC----
T ss_pred             CCCCC--------------HHHHHHHHHHhCCEE-EeChhHhCCCCCCEEEEE-e--eCCHHHHHHHHHHHHHHHHh
Confidence            32211              11345566554 644 44322111  14689998 3  56899999999999988764

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.87  E-value=9.6e-21  Score=190.12  Aligned_cols=315  Identities=12%  Similarity=0.032  Sum_probs=193.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEE-ecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMF-TSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl-~~~~~h~s~~~~~~~~g  189 (480)
                      .....+++++++++++.+.+.++|++|||+||..|+++++...    ...|.   ||+..|+ .....|.....+....+
T Consensus       117 ~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~----~~~g~---~g~~~ii~~~~~yhg~~~~~~~~~~  189 (457)
T 3tfu_A          117 HEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYW----RGRGL---PGKRRLMTWRGGYHGDTFLAMSICD  189 (457)
T ss_dssp             CHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHH----HHTTC---TTCCEEEEETTCCCCSSHHHHTTSC
T ss_pred             CHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHH----HhcCC---CCCceEEEEcCCcCCccHHhhcccC
Confidence            3455678888999998765689999999999999999998631    11222   3343444 45555555444433311


Q ss_pred             -C---------CCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEecc-CCCccccccC----hHHHHHHHHH
Q psy12303        190 -L---------GTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTS-GTTVLGAFDP----IEEIADICQK  252 (480)
Q Consensus       190 -~---------~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~-~~~~~G~~~~----l~~I~~i~~~  252 (480)
                       .         ....+..+|...  ....|+++|++++++..   .++++|+++. +++++|.+.+    +++|.++|++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~---~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~  266 (457)
T 3tfu_A          190 PHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHA---GELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRR  266 (457)
T ss_dssp             CC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHG---GGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHH
T ss_pred             CcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCC---CCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHH
Confidence             0         001334444432  22358899999998531   2388999999 8999998876    9999999999


Q ss_pred             cCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccC
Q psy12303        253 YNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYD  331 (480)
Q Consensus       253 ~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  331 (480)
                      ||+++|+|++|.++......+.. ...++ ..|+++  +.|.++++ .+.|+++.++ +..+.........+.+.     
T Consensus       267 ~gillI~DEv~~g~gr~G~~~a~-~~~~~-~pdiit--~sK~l~gG~~~lG~v~~~~-~i~~~~~~~~~~~~~~~-----  336 (457)
T 3tfu_A          267 YEVLLIFDEIATGFGRTGALFAA-DHAGV-SPDIMC--VGKALTGGYLSLAATLCTA-DVAHTISAGAAGALMHG-----  336 (457)
T ss_dssp             HTCEEEEECTTTTTTTTSSSSTH-HHHTC-CCSEEE--ECGGGGTTSSCCEEEEEEH-HHHHHHHHSSSCSCCCC-----
T ss_pred             cCCEEEEEcCccCCccccchhHh-HhcCC-CceEEE--EChhhhCCCcceEEEEEcH-HHHHHhhccCCCceeEe-----
Confidence            99999999999875432222211 12233 578776  55988876 3789888754 34433321111100000     


Q ss_pred             cccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC--CCCeEEecCCceeEEEEEeecCcc
Q psy12303        332 VRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM--PDKFYLILEPEMVNVSFWYLPTRV  409 (480)
Q Consensus       332 ~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~--~~g~~~~~~~~~~~v~f~~~~~~~  409 (480)
                                 .+.....+++.+++..+..-.-++..++..++.+++++.|++.  .+++..+ ++...++.+.+. ...
T Consensus       337 -----------~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~G~~~~i~l~-~~~  403 (457)
T 3tfu_A          337 -----------PTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDV-RVCGAIGVIECD-RPV  403 (457)
T ss_dssp             -----------CTTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGGGSTTEEEE-EECSSCEEEEES-SCC
T ss_pred             -----------cCCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCCeeee-ecCCeEEEEEEC-Ccc
Confidence                       0111234444444433321111345677778888888888761  2455443 233344444332 111


Q ss_pred             CCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        410 RNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       410 ~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .              ..++.++|.++|+++...      .+++|++ ++...|++||++++++|++++++
T Consensus       404 ~--------------~~~~~~~l~~~Gv~v~~~------~~~lRi~-p~~~~t~eei~~~l~~L~~~l~~  452 (457)
T 3tfu_A          404 D--------------LAVATPAALDRGVWLRPF------RNLVYAM-PPYICTPAEITQITSAMVEVARL  452 (457)
T ss_dssp             C--------------HHHHHHHHHHTTEECCCB------TTEEEEC-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             c--------------HHHHHHHHHHCCeEEEec------CCEEEEE-CCCCCCHHHHHHHHHHHHHHHHH
Confidence            0              245778888888543321      4699998 88889999999999999998764

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.87  E-value=1.6e-20  Score=186.06  Aligned_cols=300  Identities=11%  Similarity=0.037  Sum_probs=184.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC-ceEEEecCCCchhHHHHHHHcCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG-QLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g-~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      ....++++++++++|.+  ++++|+|||+|+..++.+++...    ...|.   +| +.+|+.+...|.+...+....+.
T Consensus        81 ~~~~~l~~~la~~~~~~--~v~~~~gg~~a~~~al~~~~~~~----~~~~~---~g~~~vi~~~~~y~~~~~~~~~~~~~  151 (406)
T 4adb_A           81 EPVLRLAKKLIDATFAD--RVFFCNSGAEANEAALKLARKFA----HDRYG---SHKSGIVAFKNAFHGRTLFTVSAGGQ  151 (406)
T ss_dssp             HHHHHHHHHHHHHSSCS--EEEEESSHHHHHHHHHHHHHHHH----HHHTC---TTCCEEEEETTCCCCSSHHHHHHSSC
T ss_pred             HHHHHHHHHHHhhCCCC--eEEEeCcHHHHHHHHHHHHHHHH----HhcCC---CCCcEEEEECCCcCCCcHHHhhccCC
Confidence            44567788899999876  69999999999999999886521    11111   23 43555555566665555555442


Q ss_pred             CC---------CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccc-----cChHHHHHHHHHcCcE
Q psy12303        191 GT---------DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAF-----DPIEEIADICQKYNMW  256 (480)
Q Consensus       191 ~~---------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~-----~~l~~I~~i~~~~~~~  256 (480)
                      ..         ..+..+|.+     |+++|+++++++      +++|+++ |+|++|.+     .++++|.++|++||++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~------~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~  219 (406)
T 4adb_A          152 PAYSQDFAPLPADIRHAAYN-----DINSASALIDDS------TCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNAL  219 (406)
T ss_dssp             GGGTGGGCSCCSSEEEECTT-----CHHHHHTTCSTT------EEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCE
T ss_pred             ccccccCCCCCCCceEeCCC-----cHHHHHHHhcCC------eEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence            11         244555543     899999988744      8999999 88999865     4699999999999999


Q ss_pred             EEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCC
Q psy12303        257 LHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDT  336 (480)
Q Consensus       257 l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  336 (480)
                      +|+|++|+++......... ...++ ..|+++  ++|+++++.++|+++.+ ++..+.......    .           
T Consensus       220 li~De~~~~~~~~g~~~~~-~~~~~-~~d~~t--~sK~~~~G~r~G~~~~~-~~~~~~~~~~~~----~-----------  279 (406)
T 4adb_A          220 LIFDEVQTGVGRTGELYAY-MHYGV-TPDLLT--TAKALGGGFPVGALLAT-EECARVMTVGTH----G-----------  279 (406)
T ss_dssp             EEEECTTTTTTTTSSSSHH-HHHTC-CCSEEE--ECGGGGTTSCCEEEEEC-HHHHHTCCTTSS----C-----------
T ss_pred             EEEeccccCCCccchhHHH-HhcCC-CCCEEE--echhhcCCCCeEEEEEc-HHHHhhhccCCc----C-----------
Confidence            9999999854332221111 11222 467776  58999966678987764 444433211100    0           


Q ss_pred             CCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC----CeEEecCCceeEEEEEeecCccCCC
Q psy12303        337 GDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD----KFYLILEPEMVNVSFWYLPTRVRNM  412 (480)
Q Consensus       337 ~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~----g~~~~~~~~~~~v~f~~~~~~~~~~  412 (480)
                      ..+      ....+...+++..+..-..++..++..++++++.+.|++ ..    .+.-. ......+.+.+. ....  
T Consensus       280 ~~~------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~-~~~g~~~~~~~~-~~~~--  348 (406)
T 4adb_A          280 TTY------GGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNT-INHRYGLFSEV-RGLGLLIGCVLN-ADYA--  348 (406)
T ss_dssp             CSS------TTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHH-HHHHHCCEEEE-EEETTEEEEEEC-TTTT--
T ss_pred             CCC------CCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhCCCceEE-EEEEEEEEEEEe-CCcH--
Confidence            000      112333333333221111156677778888888888876 31    12111 112233344332 1100  


Q ss_pred             chhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        413 PHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       413 ~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                                ....++.+.|.++|+.+...    + .+++|++ ++..+|++||++++++|++++++
T Consensus       349 ----------~~~~~~~~~l~~~gi~v~~~----~-~~~iRi~-~~~~~~~e~i~~~~~~l~~~l~~  399 (406)
T 4adb_A          349 ----------GQAKQISQEAAKAGVMVLIA----G-GNVVRFA-PALNVSEEEVTTGLDRFAAACEH  399 (406)
T ss_dssp             ----------TCHHHHHHHHHHTTEECEES----S-TTEEEEC-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHHCCcEEeec----C-CCeEEEE-CCCCCCHHHHHHHHHHHHHHHHH
Confidence                      00246778888888543332    2 5799998 88899999999999999987753

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.87  E-value=5.6e-20  Score=185.50  Aligned_cols=326  Identities=14%  Similarity=0.053  Sum_probs=198.6

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC-ceEEEecCCCchhHHHHHHHc
Q psy12303        110 FILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG-QLVMFTSDQCHYSVRSCAAVC  188 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g-~~~vl~~~~~h~s~~~~~~~~  188 (480)
                      ..+...++.++++++++.+...++|++|||+||..|+++++...    ...|.   +| +.+|+.....|.....+....
T Consensus        95 ~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~----~~~g~---~~~~~vi~~~~~yHg~~~~~~~~~  167 (476)
T 3i5t_A           95 ATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYN----NVLGR---PQKKRIIVRYDGYHGSTALTAACT  167 (476)
T ss_dssp             BCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHH----HHTTC---TTCCEEEEETTCCCCSSHHHHHTC
T ss_pred             CCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHH----HhcCC---CCCCEEEEEcCCcCcCChhhcccc
Confidence            35667788899999997666689999999999999999998641    22332   22 334555555666655555443


Q ss_pred             CCC---------CCCeEEeeCCCC--C-CCC--------HHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hH
Q psy12303        189 GLG---------TDNCVEVPSDKR--G-RLI--------PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IE  244 (480)
Q Consensus       189 g~~---------~~~v~~v~~~~~--~-~~d--------~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~  244 (480)
                      |..         ...+..++....  . ..|        +++|++++++..  ...+++|+++.++++.|.+.+    ++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~ep~~~~~G~~~~~~~~L~  245 (476)
T 3i5t_A          168 GRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLG--PDTIAAFLAEPILASGGVIIPPAGYHA  245 (476)
T ss_dssp             CCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTSBCCCTTHHH
T ss_pred             CChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCcccCCHHHHH
Confidence            321         113445543221  1 122        788998887531  123789999999999998665    99


Q ss_pred             HHHHHHHHcCcEEEeeccccccccccccccCcc-cCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCC---
Q psy12303        245 EIADICQKYNMWLHVDAAWGGGLLLSKKYRHPR-LTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMS---  319 (480)
Q Consensus       245 ~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~---  319 (480)
                      +|.++|++||+++|+|++|+++......+.. . ..++ ..|++++  .|.++++ .+.|+++.+ +++.+......   
T Consensus       246 ~l~~lc~~~gillI~DEv~~g~gr~G~~~~~-~~~~~v-~pdi~t~--sK~l~~G~~plg~v~~~-~~i~~~~~~~~~~~  320 (476)
T 3i5t_A          246 RFKAICEKHDILYISDEVVTGFGRCGEWFAS-EKVFGV-VPDIITF--AKGVTSGYVPLGGLAIS-EAVLARISGENAKG  320 (476)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTTTSSSCHH-HHTTCC-CCSEEEE--CGGGGTTSSCCEEEEEC-HHHHHTTSGGGCTT
T ss_pred             HHHHHHHHcCCEEEEEecccCCccccCceee-ecccCC-Ccchhhh--hhhhcCCCcCeEEEEEC-HHHHHHHhcCCccc
Confidence            9999999999999999999976443322222 2 3344 5788875  4999887 688988874 44444322110   


Q ss_pred             cccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEecCCc
Q psy12303        320 AEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP---DKFYLILEPE  396 (480)
Q Consensus       320 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~---~g~~~~~~~~  396 (480)
                      ..+...                 .+.....+++.+++..+..-.-+++.++..++.+++.+.|++ +   |.+..+ ++.
T Consensus       321 ~~~~~~-----------------~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~-l~~~~~v~~v-~~~  381 (476)
T 3i5t_A          321 SWFTNG-----------------YTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALAS-LRDLPGVAET-RSV  381 (476)
T ss_dssp             CEECCC-----------------CTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHT-TTTSTTEEEE-EEE
T ss_pred             cccccc-----------------CCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhcCCCeEEE-Eec
Confidence            001100                 111123444444444332111145667777888888888775 4   444443 233


Q ss_pred             eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        397 MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       397 ~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      ..++.+.+........   .+.. .......+.+.+.++|.++...      .+++|++ ++..+|+++|++++++|+++
T Consensus       382 G~~~~i~~~~~~~~~~---~~~~-~~~~~~~~~~~l~~~Gv~v~~~------g~~iRi~-p~l~~t~e~i~~~l~~l~~~  450 (476)
T 3i5t_A          382 GLVGCVQCLLDPTRAD---GTAE-DKAFTLKIDERCFELGLIVRPL------GDLCVIS-PPLIISRAQIDEMVAIMRQA  450 (476)
T ss_dssp             TTEEEEEECCC--------CCHH-HHHHHHHHHHHHHHTTEECEEE------TTEEEEC-CCTTCCHHHHHHHHHHHHHH
T ss_pred             CceeEEEEecCccccc---cccc-hhHHHHHHHHHHHHCCCEEEec------CCEEEEE-CCCCCCHHHHHHHHHHHHHH
Confidence            4444454432210000   0000 0012346778888898554432      2699999 88999999999999999987


Q ss_pred             hcc
Q psy12303        477 GHD  479 (480)
Q Consensus       477 ~~~  479 (480)
                      +++
T Consensus       451 l~~  453 (476)
T 3i5t_A          451 ITE  453 (476)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.87  E-value=1.1e-21  Score=192.03  Aligned_cols=293  Identities=13%  Similarity=0.071  Sum_probs=181.6

Q ss_pred             HHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCC---chhHHHHHH
Q psy12303        111 ILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQC---HYSVRSCAA  186 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~---h~s~~~~~~  186 (480)
                      ..+++++.+++++++|.+ +.++++++|||+|+..++.++  .              |+ .|+++...   |+++...+.
T Consensus        57 ~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~--~--------------gd-~Vl~~~~~y~~~~~~~~~~~  119 (374)
T 2aeu_A           57 SYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL--K--------------PK-KVIHYLPELPGHPSIERSCK  119 (374)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH--C--------------CS-EEEEECSSSSCCTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC--C--------------CC-EEEEecCCCCccHHHHHHHH
Confidence            355677888889999983 356899999999999998865  2              35 67777773   555555677


Q ss_pred             HcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEE-EEeccCCCccc-cccChHHHHHHHHHcCcEEEeecccc
Q psy12303        187 VCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFF-VNCTSGTTVLG-AFDPIEEIADICQKYNMWLHVDAAWG  264 (480)
Q Consensus       187 ~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~-v~~~~~~~~~G-~~~~l~~I~~i~~~~~~~l~vD~a~~  264 (480)
                      ..|.   +++.+       .|+++|+++ ++      ++++ |++++++|++| ...++++|.++|++||+++|+|++|+
T Consensus       120 ~~g~---~~~~v-------~d~~~l~~~-~~------~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~  182 (374)
T 2aeu_A          120 IVNA---KYFES-------DKVGEILNK-ID------KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASG  182 (374)
T ss_dssp             HTTC---EEEEE-------SCHHHHHTT-CC------TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTH
T ss_pred             HcCc---EEEEe-------CCHHHHHhc-CC------CccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcc
Confidence            7777   66666       388888876 32      3889 99999999999 88999999999999999999999998


Q ss_pred             cccc-cc-c--cccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcc
Q psy12303        265 GGLL-LS-K--KYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKV  340 (480)
Q Consensus       265 ~~~~-~~-~--~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  340 (480)
                      .+.. +. .  ....       ++|+++.|+||++++ .+.|+++.++ +..+...... ...                 
T Consensus       183 ~~~~~~~~~~~~~~~-------~~di~~~S~sK~l~g-~~~G~~~~~~-~~~~~l~~~~-~~~-----------------  235 (374)
T 2aeu_A          183 ARVRLLFNQPPALKL-------GADLVVTSTDKLMEG-PRGGLLAGKK-ELVDKIYIEG-TKF-----------------  235 (374)
T ss_dssp             HHHHHHTTCCCHHHH-------TCSEEEEETTSSSSS-CSCEEEEEEH-HHHHHHHHHH-HTT-----------------
T ss_pred             cccccccccCCcccc-------CCcEEEecCcccccC-cceEEEEECH-HHHHHHHHhh-ccc-----------------
Confidence            7641 11 1  1112       579999999999876 4788887654 4444332111 000                 


Q ss_pred             ccCCCCCCchH---HHHHHHHhcHHHHHHHHHHHHHH----HHHHHHHHhcCC---CCeEEecCCceeEEEEEeecCccC
Q psy12303        341 IQCGRHNDIFK---LWLQWRAKGDEGFEKQIDRLMEL----AEYMVKKIKSMP---DKFYLILEPEMVNVSFWYLPTRVR  410 (480)
Q Consensus       341 ~~~~r~~~~l~---~~~~l~~~g~~~~~~~~~~~~~l----~~~l~~~l~~~~---~g~~~~~~~~~~~v~f~~~~~~~~  410 (480)
                         +.....+.   +..++..+..+.++...++...+    .+.+.+.|.. .   +|+.+...|....+.+ .....  
T Consensus       236 ---~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~g~~~~~~~~g~~~~~-~~~~~--  308 (374)
T 2aeu_A          236 ---GLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKA-IDDNINIVYERTPTGFVIKR-VYKDD--  308 (374)
T ss_dssp             ---TCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTT-TCTTEEEEEEECSSEEEEEE-EESSH--
T ss_pred             ---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhccCcceeeCCceEEEEe-ecccc--
Confidence               00012223   33334433333344444444444    4666666665 4   4666644454433332 11110  


Q ss_pred             CCchhhHHHHhhhhhHHHHHH-HHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        411 NMPHEKRLNILGEITPILKGR-MMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       411 ~~~~~~~~~~l~~~~~~i~~~-l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                            ... .. ...++... +.+.|+++.....+.+..+++|++++....++.+++++++.|++.+++
T Consensus       309 ------~~~-~~-~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~  370 (374)
T 2aeu_A          309 ------TIN-IK-KLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKM  370 (374)
T ss_dssp             ------HHH-HH-HHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHH
T ss_pred             ------ccc-cc-chHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHH
Confidence                  000 00 01123333 345674443322222224689999655555666699999999887764

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.87  E-value=3.4e-20  Score=186.21  Aligned_cols=326  Identities=13%  Similarity=0.075  Sum_probs=192.2

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      .....++++.++++++.+...+++|+|||+|+..++++++...    +.+|.+  +++.+|+.+...|.+...++...|.
T Consensus        92 ~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~----~~~g~~--~~~~vi~~~~~yhg~~~~~~~~~g~  165 (449)
T 3a8u_X           92 HPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYW----RLKGQA--TKTKMIGRARGYHGVNIAGTSLGGV  165 (449)
T ss_dssp             CHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHH----HHTTCT--TCCEEEEETTCCCCSSHHHHHHCCC
T ss_pred             CHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHH----HhcCCC--CCCEEEEECCCcCCCChhhhhccCC
Confidence            3455677888999988766789999999999999999887521    112210  2243454566667666666666542


Q ss_pred             -------C--CCCeEEeeCCCCC-----CCC--------HHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hH
Q psy12303        191 -------G--TDNCVEVPSDKRG-----RLI--------PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IE  244 (480)
Q Consensus       191 -------~--~~~v~~v~~~~~~-----~~d--------~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~  244 (480)
                             +  ...+..++.+..+     .+|        +++|++++++..  ..++++|+++..++++|.+.|    ++
T Consensus       166 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~tG~~~~~~~~l~  243 (449)
T 3a8u_X          166 NGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHD--ASNIAAVFVEPLAGSAGVLVPPEGYLK  243 (449)
T ss_dssp             HHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTCBCCCTTHHH
T ss_pred             hhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCCccCCHHHHH
Confidence                   1  1145566654321     256        999999997531  013788888877778999888    99


Q ss_pred             HHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccc
Q psy12303        245 EIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYL  323 (480)
Q Consensus       245 ~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l  323 (480)
                      +|.++|++||+++|+|++|+++......... ...++ ..|+++  ++|+++++ .++|++++++ ++.+.......+  
T Consensus       244 ~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~-~~~~~-~~di~s--~sK~l~~G~~~~G~~~~~~-~~~~~l~~~~~~--  316 (449)
T 3a8u_X          244 RNREICNQHNILLVFDEVITGFGRTGSMFGA-DSFGV-TPDLMC--IAKQVTNGAIPMGAVIAST-EIYQTFMNQPTP--  316 (449)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTTTSSSSHH-HHHTC-CCSEEE--ECGGGGTTSSCCEEEEEEH-HHHHHHHTCSSC--
T ss_pred             HHHHHHHHhCCEEEEeccccCccccCcchhh-hhcCC-CCCEEE--EcccccCCCCceEEEEECH-HHHHHhhccCcc--
Confidence            9999999999999999999654322111111 11222 467765  56999864 5689988764 444443321100  


Q ss_pred             cccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec--CCceeEEE
Q psy12303        324 FMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVS  401 (480)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~--~~~~~~v~  401 (480)
                         ...  ..+..     ..+.....+.+.+++..+..-.-++..++..++.+++.+.|++ +.++.++.  ++...++.
T Consensus       317 ---~~~--~~~~~-----~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~~~~g~~~~  385 (449)
T 3a8u_X          317 ---EYA--VEFPH-----GYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHG-IKGAKNVIDIRNFGLAGA  385 (449)
T ss_dssp             ---TTS--CSSCC-----CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHT-TTTSTTEEEEEEETTEEE
T ss_pred             ---ccc--ccccc-----cCCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HhcCCCeEEEeeeEEEEE
Confidence               000  00000     0011123333333333221100124677888888999999887 43332111  23333444


Q ss_pred             EEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        402 FWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       402 f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.+.... ...   .    ..  ..++.+.|.++|++ +.+.   +  +++|++ ++..+|+++|++++++|++++++
T Consensus       386 i~~~~~~-~~~---~----~~--~~~~~~~l~~~Gv~-v~~~---g--~~iRis-~~~~~t~~~i~~~l~~l~~~l~~  446 (449)
T 3a8u_X          386 IQIAPRD-GDA---I----VR--PFEAGMALWKAGFY-VRFG---G--DTLQFG-PTFNSKPQDLDRLFDAVGEVLNK  446 (449)
T ss_dssp             EEECCBT-TBS---S----HH--HHHHHHHHHHHTEE-CEEE---T--TEEEEC-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCc-ccc---c----cc--HHHHHHHHHHCCcE-EecC---C--CEEEEE-CCCcCCHHHHHHHHHHHHHHHHH
Confidence            4332111 000   0    00  12466777788844 3332   2  689999 77889999999999999988764

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.87  E-value=1.2e-20  Score=189.39  Aligned_cols=350  Identities=11%  Similarity=0.020  Sum_probs=211.1

Q ss_pred             HHHHHHHHhhccCC-ccCCCCCccccccCCCChHHhHHHHHHHHc---CcCCcchhcChhhHHHHHHHHHHHHHHhCCC-
Q psy12303         54 QKLIDDCFTTLKYQ-VRTGHPMFMNQLSCGLDVVSMAGEWLIATA---NTNMFTYEIAPVFILMETVVLEKMRQIIGWQ-  128 (480)
Q Consensus        54 ~~i~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~-  128 (480)
                      -.+.+.++..-.+. +......|+++...+...+++. +......   ......|....+..++.+++.+++   +|.+ 
T Consensus        37 ~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~-~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l---~g~~~  112 (448)
T 3meb_A           37 LNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVK-EAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLM---FGKDS  112 (448)
T ss_dssp             HHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHH-HHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHH---HCTTC
T ss_pred             HHHHHHHHhCCCCCeEEeecccccCCCCCEechHHHH-HHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHh---cCCCc
Confidence            34444454433222 3345556666554444444444 4333332   122334444445555555544444   3776 


Q ss_pred             ----CCCeEE--CCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHH----HcCCCCCCeEEe
Q psy12303        129 ----GGDSIL--APGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAA----VCGLGTDNCVEV  198 (480)
Q Consensus       129 ----~~~~~~--t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~----~~g~~~~~v~~v  198 (480)
                          ++++++  |+|||+|+..++......            .||+ .|+++.++|.++...++    ..|.   +++.+
T Consensus       113 ~~~~~~~i~~~~t~ggt~al~l~~~~~~~~------------~~gd-~Vlv~~p~~~~~~~~~~~~~~~~G~---~v~~~  176 (448)
T 3meb_A          113 KAAQEGRIASCQSLSGTGSLHIGFEFLHLW------------MPKA-EFYMPSTTWPNHYGIYDKVFNKLKV---PYKEY  176 (448)
T ss_dssp             HHHHTTCEEEEEESHHHHHHHHHHHHHHHH------------CTTC-CEEEESSCCTHHHHHHHHHHCTTTS---CCEEE
T ss_pred             cccCcCcEEEEECCcHHHHHHHHHHHHHHh------------CCCC-EEEECCCCCHhHHHHHHhhHHhCCC---eEEEE
Confidence                578999  999999998754432211            1445 78888999999999999    8887   78889


Q ss_pred             eC-CCC--CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCcEEEeeccccccccccc-
Q psy12303        199 PS-DKR--GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSK-  271 (480)
Q Consensus       199 ~~-~~~--~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~-  271 (480)
                      |+ +++  +.+|+++|++++++.   ...++++++++++||||.+.+   +++|+++|++||+++++|++|+++..... 
T Consensus       177 ~~~~~~~~~~~d~e~l~~~l~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~  253 (448)
T 3meb_A          177 TYLRKDGELEIDFSNTKKDIQSA---PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFE  253 (448)
T ss_dssp             CCBCTTSCSSBCHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHH
T ss_pred             eccccccCCCcCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcc
Confidence            98 654  899999999999752   123788999999999999977   55699999999999999999987654320 


Q ss_pred             --cccCcccCCCCCCccceeCccccCCCc-ccceEE--EE--------eCc----hhhHhhhcC-CcccccccccccCcc
Q psy12303        272 --KYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTI--HF--------KQD----GLLISCNQM-SAEYLFMQDKLYDVR  333 (480)
Q Consensus       272 --~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~--~~--------~~~----~~~~~~~~~-~~~~l~~~~~~~~~~  333 (480)
                        ......+.....-.+++.|++|.++.| .++|++  +.        .++    .+....... ...+.          
T Consensus       254 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~----------  323 (448)
T 3meb_A          254 ADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWS----------  323 (448)
T ss_dssp             HHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTS----------
T ss_pred             cCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccC----------
Confidence              000000101112235688999999853 567887  54        333    222211100 00000          


Q ss_pred             cCCCCccccCCCCCCchHHHHHHHHhcH--------HHHHHHHHHHHHHHHHHHHHHhcCC--CC------eEEecCCce
Q psy12303        334 YDTGDKVIQCGRHNDIFKLWLQWRAKGD--------EGFEKQIDRLMELAEYMVKKIKSMP--DK------FYLILEPEM  397 (480)
Q Consensus       334 ~~~~~~~~~~~r~~~~l~~~~~l~~~g~--------~~~~~~~~~~~~l~~~l~~~l~~~~--~g------~~~~~~~~~  397 (480)
                                  ....+..+++...+..        +.++++.++..++++++.+.|++ .  ++      +... .|+.
T Consensus       324 ------------~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~~~~~~~-~~~~  389 (448)
T 3meb_A          324 ------------MSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAK-RKTPGPGSKGTWDHI-LTAI  389 (448)
T ss_dssp             ------------SCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCSTTTCCCTHH-HHCC
T ss_pred             ------------CccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCcCccccccee-CCCc
Confidence                        0122333333333211        44677888889999999999998 5  44      4432 3556


Q ss_pred             eEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHH-HhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        398 VNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRM-MQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       398 ~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      +.++|...+                   .+...++ .+.| +++.++     .  .|+++.  ..++++|++++++|+++
T Consensus       390 g~~~~~~~~-------------------~~~~~~ll~~~g-V~v~~G-----~--gRis~a--~~~~~~i~~~~~~l~~~  440 (448)
T 3meb_A          390 GMFTFTGLT-------------------PEHVDYLKEKWS-IYLVKA-----G--GRMSMC--GLTESNCDYVAEAIHDA  440 (448)
T ss_dssp             SSEEECCCC-------------------HHHHHHHHHHHC-EEECSG-----G--GEEEGG--GCCTTTHHHHHHHHHHH
T ss_pred             eEEEecCCC-------------------HHHHHHHHHhCC-EEEeCC-----C--cEEEEe--cCCHHHHHHHHHHHHHH
Confidence            666662211                   1233444 3456 444431     1  299953  23566799999999988


Q ss_pred             hcc
Q psy12303        477 GHD  479 (480)
Q Consensus       477 ~~~  479 (480)
                      +++
T Consensus       441 l~~  443 (448)
T 3meb_A          441 VTK  443 (448)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            754

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.87  E-value=6.4e-20  Score=184.70  Aligned_cols=328  Identities=11%  Similarity=0.027  Sum_probs=192.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC-ceEEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG-QLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g-~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .+...+++++++++++.+.+.++||+|||+|+..++++++...    ...|.   || +.+|+.....|.....+....|
T Consensus        94 ~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~----~~~g~---~~~~~vi~~~~~yhg~~~~~~~~~~  166 (460)
T 3gju_A           94 TEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYN----NVLGR---PEKKKIISRWRGYHGSGVMTGSLTG  166 (460)
T ss_dssp             CHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHH----HHTTC---TTCCEEEEETTCCCCSSHHHHHHCC
T ss_pred             CHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHH----HhcCC---CCCCEEEEECCCcCCCCHHHhhccC
Confidence            4566778888999987666689999999999999999998631    12222   22 4344445555665555554433


Q ss_pred             CC---------CCCeEEeeCCC-----CCCCC--------HHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----h
Q psy12303        190 LG---------TDNCVEVPSDK-----RGRLI--------PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----I  243 (480)
Q Consensus       190 ~~---------~~~v~~v~~~~-----~~~~d--------~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l  243 (480)
                      ..         ...+..+|...     +..++        +++|++++++.  ...++++|+++..++++|.+.+    +
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~--~~~~~aaii~ep~~~~~G~~~~~~~~l  244 (460)
T 3gju_A          167 LDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAE--GPETIAAFIGEPILGTGGIVPPPAGYW  244 (460)
T ss_dssp             CGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHH--CGGGEEEEEECSSBSTTTSBCCCTTHH
T ss_pred             CcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhc--CCCCEEEEEECCccCCCCCccCCHHHH
Confidence            21         12456666432     11233        58888888742  1123789999998888888766    9


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcC--Cc
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQM--SA  320 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~--~~  320 (480)
                      ++|.++|++||+++|+|++|+++......+.. ...++ ..|++++  .|.++++ .+.|+++.++ ++.+.....  ..
T Consensus       245 ~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~-~~~~~-~pdi~t~--sK~l~gG~~~lg~v~~~~-~i~~~~~~~~~~~  319 (460)
T 3gju_A          245 EKIQAVLKKYDVLLVADEVVTGFGRLGTMFGS-DHYGI-KPDLITI--AKGLTSAYAPLSGVIVAD-RVWQVLVQGSDKL  319 (460)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTTTSSSCHH-HHHTC-CCSEEEE--CGGGTTTSSCCEEEEEEH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCcccccchH-hhcCC-CCCeeee--ehhhcCCCCCeEEEEECH-HHHHHHhcccccc
Confidence            99999999999999999999976433222111 12233 5677774  5999877 5889888754 343332110  00


Q ss_pred             ccccccccccCcccCCCCccccCCCCCCchHHHHH---HHHhcHHH-HHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQ---WRAKGDEG-FEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE  396 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~---l~~~g~~~-~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~  396 (480)
                      ..+.+.                .+.....+...++   ++.+..+. ++...+....+.+.|.+.+.+ .+.+..+ ++.
T Consensus       320 ~~~~~~----------------~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~-~~~  381 (460)
T 3gju_A          320 GSLGHG----------------WTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGG-HKNVGEV-RGD  381 (460)
T ss_dssp             CSCSCC----------------CTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT-STTEEEE-EEE
T ss_pred             cccccC----------------CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-CCCeEEE-eee
Confidence            000000                0011233333333   33322222 233333333445555555566 5666554 333


Q ss_pred             eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        397 MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       397 ~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      ...+.+.+........   .+.. -.....++.+.+.++|+++... .  . .+++|++ ++..+|+++|++++++|+++
T Consensus       382 g~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~l~~~Gv~v~~~-~--~-~~~iRi~-~~~~~t~e~i~~~l~~l~~~  452 (460)
T 3gju_A          382 GMLAAVEFVADKDDRV---FFDA-SQKIGPQVATALAASGVIGRAM-P--Q-GDILGFA-PPLCLTREQADIVVSKTADA  452 (460)
T ss_dssp             TTEEEEEECSBTTTTB---CCCG-GGCHHHHHHHHHHHTTEECEEC-S--S-SCEEEEC-CCTTCCHHHHHHHHHHHHHH
T ss_pred             eEEEEEEEccCccccc---cccc-hHHHHHHHHHHHHHCCeEEecC-C--C-CCEEEEE-CCCCCCHHHHHHHHHHHHHH
Confidence            4444454432210000   0000 0011346778888998544432 2  2 4799999 88899999999999999987


Q ss_pred             hcc
Q psy12303        477 GHD  479 (480)
Q Consensus       477 ~~~  479 (480)
                      +++
T Consensus       453 l~~  455 (460)
T 3gju_A          453 VKS  455 (460)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.87  E-value=8.9e-20  Score=183.06  Aligned_cols=325  Identities=11%  Similarity=0.032  Sum_probs=182.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCC-chhHHHHHHHc
Q psy12303        110 FILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQC-HYSVRSCAAVC  188 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~-h~s~~~~~~~~  188 (480)
                      ......+++++++++++.+...++||+|||+|+..|+++++...    ...|..  .++ .|++.+.. |.+...+....
T Consensus        85 ~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~----~~~G~~--~~~-~vi~~~~~yhg~~~~~~~~~  157 (448)
T 3dod_A           85 TNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYW----KNIGKP--EKQ-KFIAMKNGYHGDTIGAVSVG  157 (448)
T ss_dssp             EEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHH----HHTTCT--TCC-EEEEEC--------------
T ss_pred             CCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHH----HhhCCC--CCC-EEEEECCCCCCccHHHHHhc
Confidence            34566778899999987655679999999999999999998631    112210  014 55555444 54443333332


Q ss_pred             CCC---------CCCeEEeeCCCCCCC-----------CHHHHHHHHHHHHHCCCccEEEEeccCC-CccccccC----h
Q psy12303        189 GLG---------TDNCVEVPSDKRGRL-----------IPSELERLVLERKAKGDIPFFVNCTSGT-TVLGAFDP----I  243 (480)
Q Consensus       189 g~~---------~~~v~~v~~~~~~~~-----------d~~~L~~~i~~~~~~~~~~~~v~~~~~~-~~~G~~~~----l  243 (480)
                      |..         ...+..+|.+..++.           |+++|+++++...   .++++|+++..+ ++.|.+.+    +
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~a~vi~ep~~~~~~G~~~~~~~~l  234 (448)
T 3dod_A          158 SIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHH---EEIAALSIESMVQGASGMIVMPEGYL  234 (448)
T ss_dssp             ---------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHG---GGEEEEEEESSEESTTTCEECCTTHH
T ss_pred             CCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCC---CCEEEEEEeCcccCCCCeecCCHHHH
Confidence            211         113455665544443           4889999997321   237888888887 88887766    9


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcC---C
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQM---S  319 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~---~  319 (480)
                      ++|.++|++||+++|+|++|+++......+.. ...++ ..|++++  .|.+++++ ++|+++.++ ++.+.....   .
T Consensus       235 ~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~-~~~~~-~~di~t~--sK~l~~G~~~ig~v~~~~-~~~~~~~~~~~~~  309 (448)
T 3dod_A          235 AGVRELCTTYDVLMIVDEVATGFGRTGKMFAC-EHENV-QPDLMAA--GKGITGGYLPIAVTFATE-DIYKAFYDDYENL  309 (448)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTTTSSSSGG-GGGTC-CCSEEEE--CGGGGTTSSCCEEEEEEH-HHHHTTCSCGGGC
T ss_pred             HHHHHHHHHhCCEEEEeccccCCCcccchhhh-hhcCC-CCCEEEe--cccccCCcCceEEEEECH-HHHHHhhhccccC
Confidence            99999999999999999999975433222222 22333 4677764  59998774 889888654 444332210   0


Q ss_pred             cccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHh---cCCCCeEEecCCc
Q psy12303        320 AEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIK---SMPDKFYLILEPE  396 (480)
Q Consensus       320 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~---~~~~g~~~~~~~~  396 (480)
                      ..+...                 .+.....+.+.+++..+..-.-+++.++..++.+++++.|.   + .+.+..+ .+.
T Consensus       310 ~~~~~~-----------------~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~-~~~  370 (448)
T 3dod_A          310 KTFFHG-----------------HSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHA-LPHVGDI-RQL  370 (448)
T ss_dssp             CCCCCC-----------------CTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT-STTEEEE-EEE
T ss_pred             Cccccc-----------------CCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhc-CCCeEEE-Eee
Confidence            001000                 01112333344433333110112344555555555555554   4 4444432 233


Q ss_pred             eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        397 MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       397 ~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      ..++.+.+.... ....  ...... ....++.+.|.++|+++ .+.     .+++|++ ++..+|+++|++++++|+++
T Consensus       371 g~~~~~~~~~~~-~~~~--~~~~~~-~~~~~~~~~l~~~Gv~~-~~~-----~~~iRi~-~~~~~t~e~i~~~l~~l~~~  439 (448)
T 3dod_A          371 GFMCGAELVRSK-ETKE--PYPADR-RIGYKVSLKMRELGMLT-RPL-----GDVIAFL-PPLASTAEELSEMVAIMKQA  439 (448)
T ss_dssp             TTEEEEEECSBT-TTTB--CCCGGG-CHHHHHHHHHHHTTEEC-CEE-----TTEEEEC-CCTTCCHHHHHHHHHHHHHH
T ss_pred             eEEEEEEEccCc-cccc--ccchhh-HHHHHHHHHHHHCCcEE-ecc-----CCEEEEE-CCCCCCHHHHHHHHHHHHHH
Confidence            334444443211 0000  000000 01246778888888544 332     3699999 88999999999999999987


Q ss_pred             hcc
Q psy12303        477 GHD  479 (480)
Q Consensus       477 ~~~  479 (480)
                      +++
T Consensus       440 l~~  442 (448)
T 3dod_A          440 IHE  442 (448)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.86  E-value=6.7e-20  Score=182.81  Aligned_cols=317  Identities=12%  Similarity=0.052  Sum_probs=186.9

Q ss_pred             HHHHHHHHHHHHHh-CCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        112 LMETVVLEKMRQII-GWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~-g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      ....++++.+++++ |-.+.++++|+||++|+..++..++...       +    + +.+|+.+...|.+...++...|.
T Consensus        84 ~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~-------~----~-~~vi~~~p~y~~~~~~~~~~~g~  151 (426)
T 1sff_A           84 EPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT-------K----R-SGTIAFSGAYHGRTHYTLALTGK  151 (426)
T ss_dssp             HHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH-------T----C-CEEEEETTCCCCSSHHHHHHSSC
T ss_pred             HHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhh-------C----C-CeEEEECCCcCCCchHhhhhcCC
Confidence            44456777788888 5122679999999999999998554310       0    3 33555566666666677777664


Q ss_pred             C--------C--CCeEEeeCCC-----CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHH
Q psy12303        191 G--------T--DNCVEVPSDK-----RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQ  251 (480)
Q Consensus       191 ~--------~--~~v~~v~~~~-----~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~  251 (480)
                      .        .  ..++.+|.+.     ++.+|+++|++++++.. .+.++++|+++...+++|.+.+    +++|.++|+
T Consensus       152 ~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~  230 (426)
T 1sff_A          152 VNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDA-APEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCD  230 (426)
T ss_dssp             CTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTC-CGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHH
T ss_pred             ccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhcc-CCCceEEEEEecccCCCCcccCCHHHHHHHHHHHH
Confidence            2        0  1267788753     23478999999997410 0113778887654444997777    999999999


Q ss_pred             HcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccC
Q psy12303        252 KYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYD  331 (480)
Q Consensus       252 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  331 (480)
                      +||+++|+|++|+++......... ...++ .+|++  +++|+++.+.++|++++++ ++......   ... .      
T Consensus       231 ~~~~~li~De~~~~~~~~g~~~~~-~~~~~-~~di~--s~sK~~~~GlriG~~~~~~-~~~~~l~~---~~~-~------  295 (426)
T 1sff_A          231 EHGIMLIADEVQSGAGRTGTLFAM-EQMGV-APDLT--TFAKSIAGGFPLAGVTGRA-EVMDAVAP---GGL-G------  295 (426)
T ss_dssp             HHTCEEEEECTTTTTTTTSSSSGG-GGTTS-CCSEE--EECGGGGTSSCCEEEEEEH-HHHTTSCT---TSB-C------
T ss_pred             HcCCEEEEechhhccCcccchhhh-hhcCC-CCCEE--EEcccccCCCceEEEEEcH-HHHhhhcc---CCc-C------
Confidence            999999999999964322211111 11222 46766  4679998656689999765 33332211   000 0      


Q ss_pred             cccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeEEEEEeecCc
Q psy12303        332 VRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVNVSFWYLPTR  408 (480)
Q Consensus       332 ~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~v~f~~~~~~  408 (480)
                           .++   ........++..+++.+..   .+..++..++++++.+.|++.   .+.+..+ ++....+.+.+.+..
T Consensus       296 -----~~~---~~~~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~  363 (426)
T 1sff_A          296 -----GTY---AGNPIACVAALEVLKVFEQ---ENLLQKANDLGQKLKDGLLAIAEKHPEIGDV-RGLGAMIAIELFEDG  363 (426)
T ss_dssp             -----CSS---SSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEE-EEETTEEEEEEBGGG
T ss_pred             -----cCC---CCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCc
Confidence                 000   0001122233334444322   234566777777777777650   3434332 234445555443110


Q ss_pred             cCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        409 VRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       409 ~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .......     .  ...++.+.|.++|+.+ .+... . .+++|++ ++..+++++|++++++|++++++
T Consensus       364 ~~~~~~~-----~--~~~~l~~~l~~~gi~v-~~~~~-~-~~~iRi~-~~~~~~~~~i~~~~~~l~~~l~~  423 (426)
T 1sff_A          364 DHNKPDA-----K--LTAEIVARARDKGLIL-LSCGP-Y-YNVLRIL-VPLTIEDAQIRQGLEIISQCFDE  423 (426)
T ss_dssp             CTTSBCH-----H--HHHHHHHHHHHTTEEC-EEEST-T-SCEEEEC-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCh-----H--HHHHHHHHHHHCCcEE-ecCCC-C-CCEEEEE-CCccCCHHHHHHHHHHHHHHHHH
Confidence            0000000     0  1245677888888544 33222 1 4799999 77789999999999999987653

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.86  E-value=4.8e-20  Score=184.25  Aligned_cols=320  Identities=13%  Similarity=0.080  Sum_probs=189.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC-
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL-  190 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~-  190 (480)
                      ....++++.+++++|.+..++++|+||++|+..++++++..       .|     ++.+|+.....|.+...+....+. 
T Consensus        85 ~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~-------~~-----~~~vi~~~~~yhg~~~~~~~~~~~~  152 (433)
T 1zod_A           85 RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLV-------TG-----KYEIVGFAQSWHGMTGAAASATYSA  152 (433)
T ss_dssp             HHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHH-------HT-----CCEEEEETTCCCCSSHHHHHTCCSS
T ss_pred             HHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHh-------hC-----CCeEEEECCCcCCCChhHHhhcCCc
Confidence            45567778899999987778999999999999999987642       11     133444555566666555544321 


Q ss_pred             -------CCCCeEEeeCCCCC------------CCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHH
Q psy12303        191 -------GTDNCVEVPSDKRG------------RLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIA  247 (480)
Q Consensus       191 -------~~~~v~~v~~~~~~------------~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~  247 (480)
                             ....+..++.+...            .+|+++|++++++.  ....+++|+++..++++|.+.+    +++|.
T Consensus       153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~  230 (433)
T 1zod_A          153 GRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ--SSGNLAAFIAEPILSSGGIIELPDGYMAALK  230 (433)
T ss_dssp             CCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHH--CCSCEEEEEECSEETTTTCEECCTTHHHHHH
T ss_pred             cccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhc--CCCCeEEEEEccccCCCCcccCCHHHHHHHH
Confidence                   01245566553211            23689999998753  1123778887766688997765    99999


Q ss_pred             HHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccc
Q psy12303        248 DICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQD  327 (480)
Q Consensus       248 ~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  327 (480)
                      ++|++||+++|+|++|+++......... ...++ ..|+++  +.|+++++.++|++++++ ++.+.....  .+...  
T Consensus       231 ~l~~~~~~~li~DEv~~~~g~~g~~~~~-~~~~~-~~di~s--~sK~~~~G~~ig~~~~~~-~~~~~~~~~--~~~~~--  301 (433)
T 1zod_A          231 RKCEARGMLLILDEAQTGVGRTGTMFAC-QRDGV-TPDILT--LSKTLGAGLPLAAIVTSA-AIEERAHEL--GYLFY--  301 (433)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSTH-HHHTC-CCSEEE--ECHHHHTTSSCEEEEECH-HHHHHHHHT--TCCCC--
T ss_pred             HHHHHhCCEEEEeccccCCCcCchHhHH-hhcCC-CCCEEE--ecccccCCCCeeEEEEhH-HHHHhhccC--CCCCC--
Confidence            9999999999999999965432221111 11123 467665  569998778899998764 444433221  01000  


Q ss_pred             cccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeEEEEEe
Q psy12303        328 KLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVNVSFWY  404 (480)
Q Consensus       328 ~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~v~f~~  404 (480)
                               .++   ++..+...++.++++.+..   ++..++..++++++.+.|++.   .+.+..+ ++....+.+.+
T Consensus       302 ---------~t~---~~~~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~-~~~g~~~~i~~  365 (433)
T 1zod_A          302 ---------TTH---VSDPLPAAVGLRVLDVVQR---DGLVARANVMGDRLRRGLLDLMERFDCIGDV-RGRGLLLGVEI  365 (433)
T ss_dssp             ---------CTT---TTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEE
T ss_pred             ---------CCC---CcCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEE
Confidence                     000   0111112222333333222   234566777777777777650   2444432 33444454544


Q ss_pred             ecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        405 LPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       405 ~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ...........       ....++.+.|.+.|++ +.+....+..+++|++ ++..+|+++|++++++|++++++
T Consensus       366 ~~~~~~~~~~~-------~~~~~~~~~l~~~Gv~-v~~~~~~~~~~~lRi~-~~~~~t~~~i~~~l~~l~~~l~~  431 (433)
T 1zod_A          366 VKDRRTKEPAD-------GLGAKITRECMNLGLS-MNIVQLPGMGGVFRIA-PPLTVSEDEIDLGLSLLGQAIER  431 (433)
T ss_dssp             EEETTTTEECT-------THHHHHHHHHHHTTEE-CCEECCTTSCCEEEEC-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ecCccccCCCh-------HHHHHHHHHHHHCCCe-EeccCCCCCCCEEEEE-CCcCCCHHHHHHHHHHHHHHHHH
Confidence            32110000000       0124567788888854 3333222213799998 88889999999999999987754

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.86  E-value=3.7e-21  Score=189.90  Aligned_cols=308  Identities=13%  Similarity=-0.036  Sum_probs=193.4

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHhCCCCCCeEE--CCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCch
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQIIGWQGGDSIL--APGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHY  179 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~--t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~  179 (480)
                      ..|....+..++++.+.+++... +.+++++++  |+|||+|+..++.+++...            ||+ .|+++.++|+
T Consensus        63 ~~y~~~~g~~~lr~~la~~~~~~-~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~------------~gd-~vl~~~p~~~  128 (394)
T 2ay1_A           63 KTYAGLSGEPEFQKAMGELILGD-GLKSETTATLATVGGTGALRQALELARMAN------------PDL-RVFVSDPTWP  128 (394)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHGG-GCCGGGEEEEEEEHHHHHHHHHHHHHHHHC------------TTC-CEEEEESCCH
T ss_pred             CCCCCCCCcHHHHHHHHHHHhCC-CCCcccEEEEecCCchhHHHHHHHHHHhcC------------CCC-EEEEcCCCCh
Confidence            34544444556666655554221 225667888  9999999999998876420            345 6778888999


Q ss_pred             hHHHHHHHcCCCCCCeEEeeCC--CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcC
Q psy12303        180 SVRSCAAVCGLGTDNCVEVPSD--KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYN  254 (480)
Q Consensus       180 s~~~~~~~~g~~~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~  254 (480)
                      ++...+...|.   +++.+|.+  +++.+|+++|++++++.   ...++++++++++|+||.+.+   +++|.++|++||
T Consensus       129 ~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~  202 (394)
T 2ay1_A          129 NHVSIMNFMGL---PVQTYRYFDAETRGVDFEGMKADLAAA---KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTG  202 (394)
T ss_dssp             HHHHHHHHHTC---CEEEEECEETTTTEECHHHHHHHHHTC---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHcCC---ceEEEecccccCCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCC
Confidence            99999999888   78889885  56789999999998752   123678888999999999976   568899999999


Q ss_pred             cEEEeecccccccccc--ccccCcccCCCCCCccceeCccccCCC-cccceEEEE--eCchhhHhhhcCCcccccccccc
Q psy12303        255 MWLHVDAAWGGGLLLS--KKYRHPRLTGIERADSVTWNPHKLMGT-LLQCSTIHF--KQDGLLISCNQMSAEYLFMQDKL  329 (480)
Q Consensus       255 ~~l~vD~a~~~~~~~~--~~~~~~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~--~~~~~~~~~~~~~~~~l~~~~~~  329 (480)
                      +++++|++|+.+....  +......+.....-.+++.|++|+++. +.++|++++  .+++.+..............   
T Consensus       203 ~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~---  279 (394)
T 2ay1_A          203 ALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQT---  279 (394)
T ss_dssp             CEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTT---
T ss_pred             CEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhh---
Confidence            9999999998765421  000000011110123567789999984 456799887  34433221110000000000   


Q ss_pred             cCcccCCCCccccCCCCCCchHHHHHHHHh--c------HHHHHHHHHHHHHHHHHHHHHHhcCCC---CeEEecCCcee
Q psy12303        330 YDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--G------DEGFEKQIDRLMELAEYMVKKIKSMPD---KFYLILEPEMV  398 (480)
Q Consensus       330 ~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g------~~~~~~~~~~~~~l~~~l~~~l~~~~~---g~~~~~~~~~~  398 (480)
                               +  .+   ...+..+++...+  +      .+.++++.++..++++++.+.|++ ..   ++++. .|..+
T Consensus       280 ---------~--~~---~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~-~~~~g  343 (394)
T 2ay1_A          280 ---------Y--SF---PPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRD-LSGSDRFGFV-AEHRG  343 (394)
T ss_dssp             ---------T--SS---CCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTSSTTTHH-HHCCS
T ss_pred             ---------c--CC---CChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCeeEE-cCCce
Confidence                     0  00   1222333333222  1      246777888888999999999987 43   35543 34445


Q ss_pred             EEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        399 NVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       399 ~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      +++|...+                  ...+...+.+.|+ .+.+        .+|++ ++ .++++++++++++|+++.
T Consensus       344 ~~~~~~~~------------------~~~~~~~l~~~gi-~v~~--------~~Ris-~~-~~~~~~i~~~~~~l~~~~  393 (394)
T 2ay1_A          344 MFSRLGAT------------------PEQVKRIKEEFGI-YMVG--------DSRIN-IA-GLNDNTIPILARAIIEVG  393 (394)
T ss_dssp             SEEECCCC------------------HHHHHHHHHHHCE-ECCT--------TCEEE-GG-GCCTTTHHHHHHHHHHHT
T ss_pred             EEEeeCCC------------------HHHHHHHHHhCCE-EecC--------CCeEE-ee-cCCHhhHHHHHHHHHHcc
Confidence            55442111                  1234455556673 3332        36999 44 478999999999998763

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.86  E-value=1.4e-19  Score=181.66  Aligned_cols=317  Identities=13%  Similarity=0.053  Sum_probs=186.3

Q ss_pred             hHHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHc
Q psy12303        110 FILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVC  188 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~  188 (480)
                      ..+...+++++++++++.+ ...++||+|||+||..|+++++..       .|     ++.+|......|.....+....
T Consensus       102 ~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~-------~g-----~~~ii~~~~~yhG~~~~~~~~~  169 (451)
T 3oks_A          102 PYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSH-------TH-----KPAVVAFDHAYHGRTNLTMALT  169 (451)
T ss_dssp             CCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHH-------HC-----CCEEEEETTCCCCSSHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHh-------cC-----CCeEEEEcCCcCCccHHHHHhc
Confidence            3456677889999998753 357999999999999999998863       11     1334444555565555554443


Q ss_pred             CCC----------CCCeEEeeCCCCC-----CC--------CHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---
Q psy12303        189 GLG----------TDNCVEVPSDKRG-----RL--------IPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---  242 (480)
Q Consensus       189 g~~----------~~~v~~v~~~~~~-----~~--------d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---  242 (480)
                      +..          ...+..+|....+     .+        +++.+++.+++.. .+..+++|+++..+++.|.+.+   
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~-~~~~~aavi~ep~~~~gG~~~~~~~  248 (451)
T 3oks_A          170 AKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQI-GADNLAAVVIEPIQGEGGFIVPADG  248 (451)
T ss_dssp             CCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHT-CGGGEEEEEECSSBTTTTCBCCCTT
T ss_pred             CCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhc-CCCCEEEEEEcCCcCCCCccCCCHH
Confidence            321          1145667665211     01        2444555555321 1234778888887777777766   


Q ss_pred             -hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcc
Q psy12303        243 -IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAE  321 (480)
Q Consensus       243 -l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~  321 (480)
                       +++|.++|++||+++|+|++|+++......... ...++ ..|+++  +.|.++++.++|+++.+ +++.+......  
T Consensus       249 ~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~-~~~~~-~pdi~t--~sK~l~~G~~iG~v~~~-~~~~~~~~~~~--  321 (451)
T 3oks_A          249 FLPTLLDWCRKNDVVFIADEVQTGFARTGAMFAC-EHEGI-DPDLIV--TAKGIAGGLPLSAVTGR-AEIMDSPHVSG--  321 (451)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGG-GGGTC-CCSEEE--ECGGGGTTSSCEEEEEE-HHHHTCSCTTS--
T ss_pred             HHHHHHHHHHHcCCEEEEEecccCCCccccchhh-hhcCC-CCCeee--ehhhhhCCcceEEEEEC-HHHHhhhcCCC--
Confidence             999999999999999999999875433222222 22233 567776  45999888889988764 34433221100  


Q ss_pred             cccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHh----cCCCCeEEecCCce
Q psy12303        322 YLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIK----SMPDKFYLILEPEM  397 (480)
Q Consensus       322 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~----~~~~g~~~~~~~~~  397 (480)
                       . .                 .+-....+...+++..+..-.-+++.++..++.+++++.|.    + .+.+..+ ++..
T Consensus       322 -~-~-----------------~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~~-~~~G  380 (451)
T 3oks_A          322 -L-G-----------------GTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAE-DDRIGDV-RGRG  380 (451)
T ss_dssp             -B-C-----------------CSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH-CTTEEEE-EEET
T ss_pred             -c-C-----------------CCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh-CCCeEEE-EEee
Confidence             0 0                 01112334444444333110012344555555555555544    4 4555543 2334


Q ss_pred             eEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        398 VNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       398 ~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      ..+.+.+.... .......       ...++.+.+.++|+++... ...  .+++|++ ++..+|+++|++++++|++++
T Consensus       381 ~~~~~~~~~~~-~~~~~~~-------~~~~~~~~l~~~Gv~v~~~-~~~--~~~iRi~-~~~~~t~e~i~~~l~~l~~~l  448 (451)
T 3oks_A          381 AMIAMELVKAG-TTEPDAD-------LTKALCAGAHAAGVIVLSC-GTY--GNVVRFL-PPLSIGDDLLNEGLDVLEEVL  448 (451)
T ss_dssp             TEEEEEEBSTT-SCCBCHH-------HHHHHHHHHHHTTEECEEE-CTT--SCEEEEC-CCTTCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCc-cCCCCHH-------HHHHHHHHHHhCCcEEecC-CCC--CCEEEEE-CCCCCCHHHHHHHHHHHHHHH
Confidence            44555443211 0000000       1246778888999554443 211  3689999 888999999999999999987


Q ss_pred             cc
Q psy12303        478 HD  479 (480)
Q Consensus       478 ~~  479 (480)
                      ++
T Consensus       449 ~~  450 (451)
T 3oks_A          449 RG  450 (451)
T ss_dssp             HC
T ss_pred             hh
Confidence            64

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.86  E-value=1.5e-21  Score=192.91  Aligned_cols=303  Identities=11%  Similarity=-0.008  Sum_probs=194.0

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHhC--CCCCCeEE--CCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCC
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQIIG--WQGGDSIL--APGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQC  177 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~--t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~  177 (480)
                      ..|...++..++.+.+.+++.+..+  ++++++++  |+|||+|+..++.+++..            .||+ .|++..++
T Consensus        63 ~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~------------~~gd-~Vl~~~p~  129 (396)
T 2q7w_A           63 KNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKN------------TSVK-RVWVSNPS  129 (396)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH------------SCCC-EEEEEESC
T ss_pred             cCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHh------------CCCC-EEEEcCCC
Confidence            3454445556666665555533222  23567888  999999999998876531            0445 78888889


Q ss_pred             chhHHHHHHHcCCCCCCeEEeeCC--CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHH
Q psy12303        178 HYSVRSCAAVCGLGTDNCVEVPSD--KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQK  252 (480)
Q Consensus       178 h~s~~~~~~~~g~~~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~  252 (480)
                      |+++...++..|.   +++.+|.+  +++.+|+++|++++++.   ..+++++++++++||||.+.+   +++|.++|++
T Consensus       130 y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~  203 (396)
T 2q7w_A          130 WPNHKSVFNSAGL---EVREYAYYDAENHTLDFDALINSLNEA---QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVE  203 (396)
T ss_dssp             CTHHHHHHHHTTC---EEEEEECEETTTTEECHHHHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHcCC---ceEEEecccCCCCCcCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999887   78889885  56789999999998642   123788899999999999865   5689999999


Q ss_pred             cCcEEEeecccccccccc--ccccCcccCCCCCCccceeCccccCCC-cccceEEEE--eCch----hhHhhhcC-Cccc
Q psy12303        253 YNMWLHVDAAWGGGLLLS--KKYRHPRLTGIERADSVTWNPHKLMGT-LLQCSTIHF--KQDG----LLISCNQM-SAEY  322 (480)
Q Consensus       253 ~~~~l~vD~a~~~~~~~~--~~~~~~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~--~~~~----~~~~~~~~-~~~~  322 (480)
                      ||+++++|++|+.+....  +......+......++++.|++|.++. +.++|++++  .+++    +....... ...+
T Consensus       204 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (396)
T 2q7w_A          204 KGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANY  283 (396)
T ss_dssp             HTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhcc
Confidence            999999999998765421  100000011111235778899999984 355799886  2442    22211100 0000


Q ss_pred             ccccccccCcccCCCCccccCCCCCCchHHHHHHHHhc--------HHHHHHHHHHHHHHHHHHHHHHhcCCC---CeEE
Q psy12303        323 LFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG--------DEGFEKQIDRLMELAEYMVKKIKSMPD---KFYL  391 (480)
Q Consensus       323 l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g--------~~~~~~~~~~~~~l~~~l~~~l~~~~~---g~~~  391 (480)
                      .                   +   ...+...++...+.        .+.+++..++..++++++.+.|++ ..   ++++
T Consensus       284 ~-------------------~---~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~  340 (396)
T 2q7w_A          284 S-------------------N---PPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQE-KGANRDFSF  340 (396)
T ss_dssp             S-------------------S---CCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH-TTCCSCCTH
T ss_pred             C-------------------C---CCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcce
Confidence            0                   0   12333333333331        246677788888999999999998 53   3665


Q ss_pred             ecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHH
Q psy12303        392 ILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLT  471 (480)
Q Consensus       392 ~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~  471 (480)
                      . .|..+.++|...    .              ...+...+.+.|+ ++.+        .+|+++. . .++++++++++
T Consensus       341 ~-~~~~~~~~~~~~----~--------------~~~~~~~l~~~gv-~v~~--------~~Ris~~-~-~~~e~i~~~~~  390 (396)
T 2q7w_A          341 I-IKQNGMFSFSGL----T--------------KEQVLRLREEFGV-YAVA--------SGRVNVA-G-MTPDNMAPLCE  390 (396)
T ss_dssp             H-HHCCSSEEECCC----C--------------HHHHHHHHHHHCE-ECCT--------TCEEEGG-G-CCTTTHHHHHH
T ss_pred             e-cCCCceEEEecC----C--------------HHHHHHHHHhcCe-eecC--------CceEEEe-e-cCHHHHHHHHH
Confidence            3 355555554211    0              1134455556673 3332        2699944 3 38999999999


Q ss_pred             HHHHh
Q psy12303        472 EMDRL  476 (480)
Q Consensus       472 ~l~~~  476 (480)
                      +|+++
T Consensus       391 ~l~~~  395 (396)
T 2q7w_A          391 AIVAV  395 (396)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99875

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.85  E-value=9e-19  Score=175.78  Aligned_cols=318  Identities=12%  Similarity=0.034  Sum_probs=182.8

Q ss_pred             hHHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHc
Q psy12303        110 FILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVC  188 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~  188 (480)
                      ..+...+++++++++++.+ ...++||+|||+||..|+++++..       .|     ++.+|+.....|.....+....
T Consensus       105 ~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~-------~g-----~~~ii~~~~~yhg~~~~~~~~~  172 (453)
T 4ffc_A          105 PYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLA-------TG-----RPAVVAFDNAYHGRTNLTMALT  172 (453)
T ss_dssp             CCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH-------HC-----CCEEEEETTCCCCSSHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHh-------cC-----CCEEEEEcCccCCcchHHHhhc
Confidence            3466678889999999754 357999999999999999998753       11     1334555555666655555543


Q ss_pred             CCC----------CCCeEEeeCCC----CCCCC-HHHHHHHHHHHHH--CCCccEEEEeccCCCccccccC----hHHHH
Q psy12303        189 GLG----------TDNCVEVPSDK----RGRLI-PSELERLVLERKA--KGDIPFFVNCTSGTTVLGAFDP----IEEIA  247 (480)
Q Consensus       189 g~~----------~~~v~~v~~~~----~~~~d-~~~L~~~i~~~~~--~~~~~~~v~~~~~~~~~G~~~~----l~~I~  247 (480)
                      +..          ...+..+|...    ...++ .+.++..++.-.+  ....+++|+++..++..|.+.+    +++|.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~  252 (453)
T 4ffc_A          173 AKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLT  252 (453)
T ss_dssp             CCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHH
T ss_pred             CCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHH
Confidence            321          11456666642    11233 2333322222111  1223677777777666677765    99999


Q ss_pred             HHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccc
Q psy12303        248 DICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQD  327 (480)
Q Consensus       248 ~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  327 (480)
                      ++|++||+++|+|++|.++......... ...++ ..|++++  .|.++++.++|+++.+ +++.+......   . .  
T Consensus       253 ~l~~~~~~llI~DEv~~g~g~~g~~~a~-~~~~~-~pdi~t~--sK~~~~G~~~G~~~~~-~~i~~~~~~~~---~-~--  321 (453)
T 4ffc_A          253 AWASENGVVFIADEVQTGFARTGAWFAS-EHEGI-VPDIVTM--AKGIAGGMPLSAVTGR-AELMDAVYAGG---L-G--  321 (453)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSTH-HHHTC-CCSEEEE--CGGGGTTSSCEEEEEE-HHHHTTSCTTS---S-C--
T ss_pred             HHHHHcCCEEEEecCccCCCcccccchh-hhcCC-CcchHhh--hhhhcCCcCeEEEEEC-HHHHhhhcccC---c-C--
Confidence            9999999999999999876433222111 12233 5677764  5999877889998764 44443221100   0 0  


Q ss_pred             cccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH----hcCCCCeEEecCCceeEEEEE
Q psy12303        328 KLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKI----KSMPDKFYLILEPEMVNVSFW  403 (480)
Q Consensus       328 ~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l----~~~~~g~~~~~~~~~~~v~f~  403 (480)
                                     .+-....+...+++..+..-.-+++.++..++.+++++.|    .+ ++.+..+ ++....+.+.
T Consensus       322 ---------------~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~-~~~g~~~~~~  384 (453)
T 4ffc_A          322 ---------------GTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEE-VDIIGEV-RGRGAMLAIE  384 (453)
T ss_dssp             ---------------CSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH-CSSEEEE-EEETTEEEEE
T ss_pred             ---------------CCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh-CCCeEEE-EeeceEEEEE
Confidence                           0011233444444333311111234445555555555544    44 5655543 2334444454


Q ss_pred             eecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        404 YLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       404 ~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.... .......       ...++.+.+.++|+++.. ....  .+++|++ ++..+|+++|++++++|++++++
T Consensus       385 ~~~~~-~~~~~~~-------~~~~~~~~l~~~Gv~v~~-~~~~--~~~iRi~-~~~~~t~e~i~~~l~~l~~~l~~  448 (453)
T 4ffc_A          385 IVKPG-TLEPDAA-------LTKSIAAEALSQGVLILT-CGTF--GNVIRLL-PPLVIGDDLLDEGITALSDIIRA  448 (453)
T ss_dssp             EBCTT-SCCBCHH-------HHHHHHHHHHHTTEECCE-ECTT--SCEEEEC-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EecCc-ccCCCHH-------HHHHHHHHHHhCCCEEec-CCCC--CCEEEEE-CCCCCCHHHHHHHHHHHHHHHHH
Confidence            43211 0000000       134677888889854433 2222  3699999 88899999999999999988754

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.85  E-value=1.2e-20  Score=192.93  Aligned_cols=361  Identities=11%  Similarity=0.054  Sum_probs=214.3

Q ss_pred             hHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhC--CC---CCCeEECCChhHHHHHHHHHHHHhcCchhHh
Q psy12303         85 VVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIG--WQ---GGDSILAPGGSISNLYAFLAARHKMFPTYKE  159 (480)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g--~~---~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~  159 (480)
                      ++.++.++.......  ..+....+..++++++.+++.+..+  .+   +.++++|+|+|+|+..++.++..+.+     
T Consensus       117 ~~~~v~a~~~~~~~~--~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l-----  189 (533)
T 3f6t_A          117 RDKVVAEWVNGAVAN--NYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHL-----  189 (533)
T ss_dssp             HHHHHHHHHHHHHTC--SCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTS-----
T ss_pred             CcHHHHHHHHHHHhC--CCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhc-----
Confidence            556665665555432  1122445667888998888877733  22   35799999999999999887432211     


Q ss_pred             cCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCC----CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCC
Q psy12303        160 KGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD----KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTT  235 (480)
Q Consensus       160 ~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~----~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~  235 (480)
                          ..||+ .|+++.++|.++..++...|.   +++.++++    .++.+|+++|++++++.      +++|++++++|
T Consensus       190 ----~~~gd-~Viv~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~d~~~l~~~l~~~------~k~v~l~~p~N  255 (533)
T 3f6t_A          190 ----LKKGD-KIAINEPIFTPYLRIPELKDY---ELVEVDLHSYEKNDWEIEPNEIEKLKDPS------IKALIVVNPTN  255 (533)
T ss_dssp             ----SCTTC-EEEEESSCCHHHHTSGGGGGS---EEEEECCCEETTTTSEECHHHHHHHSCTT------EEEEEEESSCT
T ss_pred             ----cCCcC-EEEEcCCCcHHHHHHHHHcCC---eEEEEEecCCcccCCCCCHHHHHHHhCCC------CeEEEEeCCCC
Confidence                01556 889999999999988888887   77888875    35789999999988654      89999999999


Q ss_pred             ccccccChH---HHHHHHH-HcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCch
Q psy12303        236 VLGAFDPIE---EIADICQ-KYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDG  310 (480)
Q Consensus       236 ~~G~~~~l~---~I~~i~~-~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~  310 (480)
                      |+|.+.+.+   +|+++|+ +||+++++|++|+.+......    ......+.++++.|++|.++.| ..+|++++++..
T Consensus       256 PtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~----~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~  331 (533)
T 3f6t_A          256 PTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKS----IYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNEKN  331 (533)
T ss_dssp             TTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCC----HHHHSGGGEEEEEESHHHHTCGGGCEEEEEEESSC
T ss_pred             CCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccC----HhhcCCCCEEEEecCcccCCCcccceEEEEECcHH
Confidence            999998765   7888888 689999999999976542111    1111124568888999999843 568999987764


Q ss_pred             hhHhhhcCCcc---------cc--cccccccC-------cccCCCCccccCCCCCCchHHHH----HHHHh--------c
Q psy12303        311 LLISCNQMSAE---------YL--FMQDKLYD-------VRYDTGDKVIQCGRHNDIFKLWL----QWRAK--------G  360 (480)
Q Consensus       311 ~~~~~~~~~~~---------~l--~~~~~~~~-------~~~~~~~~~~~~~r~~~~l~~~~----~l~~~--------g  360 (480)
                      .........++         |-  ........       .......... .  ........+    ++..+        .
T Consensus       332 ~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~-~--~~~~~~q~a~a~~a~~~L~~~~g~~~~  408 (533)
T 3f6t_A          332 VFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHT-A--GLSTPQQIMEALFSMTHLLTSTNGGSD  408 (533)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGG-C--SCCHHHHHHHHHHHHHHHTTCBGGGTB
T ss_pred             HHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcc-c--CCChHHHHHHHHHHHHHHhhhccccch
Confidence            33222111110         00  00000000       0000000000 0  011111111    23322        2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhh--hhhHHHHHHHH-hccc
Q psy12303        361 DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILG--EITPILKGRMM-QAGT  437 (480)
Q Consensus       361 ~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~--~~~~~i~~~l~-~~g~  437 (480)
                      ...++++.++..+.++++.+.|.-   ++.+ ..|..+.+++...+.........++...+.  ....++..++. +.|+
T Consensus       409 ~~~~~~~~~~~~~r~~~l~~~L~~---~~~~-~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV  484 (533)
T 3f6t_A          409 DPYIDIARKLVSERYDQLHDAMQA---PKDE-TDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGV  484 (533)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTC---CCCC-STTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC---Cccc-cCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCE
Confidence            356677788888889999998852   4543 356666666543221000000000000000  00123444444 5575


Q ss_pred             EEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        438 MMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       438 ~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+.+...+....+++|+++.+  .++++|++++++|.+++++
T Consensus       485 ~v~pg~~f~~~~~~iRls~a~--~~~e~i~~~i~~L~~~l~~  524 (533)
T 3f6t_A          485 VLVDGVGFGAKPGELRVSQAN--LPTEDYALIGKQVLELLKE  524 (533)
T ss_dssp             SSCTTEEECSSTTEEEEESSS--SCHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCcccCCCCCEEEEEEee--CCHHHHHHHHHHHHHHHHH
Confidence            443322222225799999533  5799999999999988754

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.85  E-value=5.1e-20  Score=181.32  Aligned_cols=217  Identities=14%  Similarity=0.080  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH-----cC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV-----CG  189 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~-----~g  189 (480)
                      .++.+.++++.|.+  .+++++||++|+..+ .....              ||+ .|+++...|.+....+..     .|
T Consensus        70 ~~l~~~la~l~g~~--~~~~~~sG~~Ai~~~-~~l~~--------------~gd-~Vi~~~~~y~~~~~~~~~~~~~~~g  131 (400)
T 3nmy_A           70 FAYERCVAALEGGT--RAFAFASGMAATSTV-MELLD--------------AGS-HVVAMDDLYGGTFRLFERVRRRTAG  131 (400)
T ss_dssp             HHHHHHHHHHHTCS--EEEEESSHHHHHHHH-HTTSC--------------TTC-EEEEESSCCHHHHHHHHHTHHHHHC
T ss_pred             HHHHHHHHHHhCCC--CEEEecCHHHHHHHH-HHHcC--------------CCC-EEEEeCCCchHHHHHHHHhhHhhcC
Confidence            34555688888886  478888889988763 22211              456 788888888866665443     47


Q ss_pred             CCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccc
Q psy12303        190 LGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLL  269 (480)
Q Consensus       190 ~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~  269 (480)
                      +   +++.++.+     |+++|+++++++      +++|++++++|++|.+.|+++|.++|++||+++++|++|+.+...
T Consensus       132 ~---~~~~v~~~-----d~~~l~~~i~~~------~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~  197 (400)
T 3nmy_A          132 L---DFSFVDLT-----DPAAFKAAIRAD------TKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQ  197 (400)
T ss_dssp             C---EEEEECTT-----SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHC
T ss_pred             e---EEEEECCC-----CHHHHHHHhccC------CCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccC
Confidence            6   78888876     899999998765      899999999999999999999999999999999999999866543


Q ss_pred             cccccCcccCCCCCCccceeCccccCCCcc-cc-e-EEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC
Q psy12303        270 SKKYRHPRLTGIERADSVTWNPHKLMGTLL-QC-S-TIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH  346 (480)
Q Consensus       270 ~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~-g-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~  346 (480)
                      .+. ..       ++|+++.|++|++++|. .. | +++++++.+......... .                    .+..
T Consensus       198 ~~~-~~-------g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~-~--------------------~g~~  248 (400)
T 3nmy_A          198 RPL-SL-------GADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQN-S--------------------IGGV  248 (400)
T ss_dssp             CGG-GG-------TCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHH-H--------------------HCCB
T ss_pred             Chh-hc-------CCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHH-h--------------------cCCC
Confidence            222 23       78999999999999773 33 4 455556554443221100 0                    1111


Q ss_pred             CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC
Q psy12303        347 NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP  395 (480)
Q Consensus       347 ~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~  395 (480)
                      ...+.+|+.++.  .+.+..+.++..+++.++.+.|++ .|.+.-+..|
T Consensus       249 ~~~~~a~~~l~~--l~~l~~r~~~~~~~a~~l~~~L~~-~p~v~~V~~p  294 (400)
T 3nmy_A          249 QGPFDSFLALRG--LKTLPLRMRAHCENALALAQWLET-HPAIEKVIYP  294 (400)
T ss_dssp             CCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTT-CTTEEEEECT
T ss_pred             CCHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHc-CCCEeEEECC
Confidence            345667777665  455677888999999999999999 8888765433

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.84  E-value=6.6e-20  Score=180.84  Aligned_cols=222  Identities=12%  Similarity=0.086  Sum_probs=160.0

Q ss_pred             HHHHHHHHHHhCCCCCCeEE---CCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecC-CCchhHHHHH-----
Q psy12303        115 TVVLEKMRQIIGWQGGDSIL---APGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSD-QCHYSVRSCA-----  185 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~---t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~-~~h~s~~~~~-----  185 (480)
                      .++.+.+++++|.+.  .++   ++|||+||..++.+..+              ||+ .|+++. ..|......+     
T Consensus        76 ~~Le~~lA~l~g~e~--alv~p~~~sGt~Ai~~al~all~--------------pGD-~Vl~~~~~~y~~~~~~~g~~~~  138 (427)
T 3i16_A           76 DSLDAVYARVFNTES--ALVRPHFVNGTHALGAALFGNLR--------------PGN-TMLSVCGEPYDTLHDVIGITEN  138 (427)
T ss_dssp             HHHHHHHHHHHTCSE--EEEETTCCSHHHHHHHHHHHHCC--------------TTC-EEEESSSSCCGGGHHHHTCSCC
T ss_pred             HHHHHHHHHHhCCcc--eEEeCCCccHHHHHHHHHHHHhC--------------CCC-EEEEeCCCccHHHHHHHhcccc
Confidence            344566999999976  355   89999999988887643              556 777776 7787666433     


Q ss_pred             ------HHcCCCCCCeEEeeCCCCCCCCHHHHHHHHH--HHHHCCCccEEEEecc----CCCccccccChHHHHHHHHH-
Q psy12303        186 ------AVCGLGTDNCVEVPSDKRGRLIPSELERLVL--ERKAKGDIPFFVNCTS----GTTVLGAFDPIEEIADICQK-  252 (480)
Q Consensus       186 ------~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~--~~~~~~~~~~~v~~~~----~~~~~G~~~~l~~I~~i~~~-  252 (480)
                            ...|+   +++.++.+++|.+|+++|+++++  ++      |++|++++    ++|++|.+.|+++|+++|++ 
T Consensus       139 ~~~~~l~~~G~---~~~~v~~~~~g~~D~e~l~~~l~~~~~------tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~  209 (427)
T 3i16_A          139 SNMGSLKEFGI---NYKQVDLKEDGKPNLEEIEKVLKEDES------ITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNI  209 (427)
T ss_dssp             CSSCCTGGGTC---EEEECCCCTTSSCCHHHHHHHHHTCTT------EEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHcCC---EEEEecCccCCCcCHHHHHHHhhCCCC------CEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHh
Confidence                  33455   78899998889999999999998  44      89999999    99999999999999999999 


Q ss_pred             -cCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc--cceEEEEeCchhhHhhhcC-Cccccccccc
Q psy12303        253 -YNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL--QCSTIHFKQDGLLISCNQM-SAEYLFMQDK  328 (480)
Q Consensus       253 -~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~--~~g~~~~~~~~~~~~~~~~-~~~~l~~~~~  328 (480)
                       +|+++++|++|+.+.........       ++|+++.|+||+++++.  ..|+++ .++++.+..... ....+..   
T Consensus       210 ~~g~~livD~a~~~~~~~~~p~~~-------gaDiv~~S~sK~lgg~g~~~gG~i~-~~~~li~~l~~~~~~~~~g~---  278 (427)
T 3i16_A          210 RKDIICFVDNCYGEFMDTKEPTDV-------GADLIAGSLIKNIGGGIAPTGGYLA-GTKDCIEKTSYRLTVPGIGG---  278 (427)
T ss_dssp             CTTSEEEEECTTTTTSSSSCGGGG-------TCSEEEEETTSGGGTTTCCSCEEEE-ECHHHHHHHHHHHSCTTTGG---
T ss_pred             CCCCEEEEECCCccccccCCcccc-------CCeEEEecCcccCCCCCCceEEEEE-ECHHHHHHHHHhcccCccCc---
Confidence             99999999999877643332233       78999999999998642  235555 456555544321 1111100   


Q ss_pred             ccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        329 LYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       329 ~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                                   ..+-.+.  ..|+.++.  ......+.++..+++.++.+.|++ + ++++.
T Consensus       279 -------------~~~~~~~--~a~~~l~g--l~~~~~r~~~~~~~a~~la~~L~~-~-g~~V~  323 (427)
T 3i16_A          279 -------------ECGSTFG--VVRSMYQG--LFLAPHISMEALKGAILCSRIMEL-A-GFEVM  323 (427)
T ss_dssp             -------------GCCCCTT--CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEE
T ss_pred             -------------cCCccHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh-C-CCeec
Confidence                         0010011  14555443  455678889999999999999999 4 66774

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.84  E-value=3.9e-20  Score=181.94  Aligned_cols=223  Identities=9%  Similarity=0.020  Sum_probs=160.1

Q ss_pred             HHHHHHHHHHhCCCCCCeEE---CCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecC-CCchhHHHHH-----
Q psy12303        115 TVVLEKMRQIIGWQGGDSIL---APGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSD-QCHYSVRSCA-----  185 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~---t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~-~~h~s~~~~~-----  185 (480)
                      .++.+.+++++|.+.  .++   ++|||+||..++.+...              ||+ .|+++. ..|......+     
T Consensus        62 ~~Le~~lA~l~g~e~--alv~p~~~sGt~Ai~~al~all~--------------~GD-~Vl~~~~~~y~~~~~~~~~~g~  124 (409)
T 3jzl_A           62 DTLERVYATVFKTEA--ALVRPQIISGTHAISTVLFGILR--------------PDD-ELLYITGQPYDTLEEIVGIRKQ  124 (409)
T ss_dssp             HHHHHHHHHHHTCSE--EEEETTSCSHHHHHHHHHHHHCC--------------TTC-EEEECSSSCCTTHHHHHTSSSS
T ss_pred             HHHHHHHHHHhCCCc--EEEECCCccHHHHHHHHHHHhcC--------------CCC-EEEEeCCCCcHhHHHHHhcccc
Confidence            345566899999875  455   89999999998887643              556 777776 7888777544     


Q ss_pred             -----HHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEecc----CCCccccccChHHHHHHHHH--cC
Q psy12303        186 -----AVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTS----GTTVLGAFDPIEEIADICQK--YN  254 (480)
Q Consensus       186 -----~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~----~~~~~G~~~~l~~I~~i~~~--~~  254 (480)
                           ...|+   +++.++.+++|.+|+++|+++++++      |++|++++    ++|++|.+.|+++|.++|++  +|
T Consensus       125 ~~~~l~~~G~---~~~~v~~~~~g~~d~e~l~~ai~~~------tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~  195 (409)
T 3jzl_A          125 GQGSLKDFHI---GYSSVPLLENGDVDFPRIAKKMTPK------TKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPE  195 (409)
T ss_dssp             SSSCTGGGTC---EEEECCCCTTSCCCHHHHHHHCCTT------EEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTT
T ss_pred             hhhHHHHcCC---EEEEeCCCCCCCcCHHHHHHhccCC------CeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCC
Confidence                 33455   7889999888999999999999764      89999999    99999999999999999999  99


Q ss_pred             cEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc-cceEEEEeCchhhHhhhcC-CcccccccccccCc
Q psy12303        255 MWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL-QCSTIHFKQDGLLISCNQM-SAEYLFMQDKLYDV  332 (480)
Q Consensus       255 ~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~-~~g~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~  332 (480)
                      +++|+|++|+.+.........       ++|+++.|+||+++++. ..|.+++.++++.+..... ..+++...      
T Consensus       196 ~~livD~a~~~~~~~~~p~~~-------g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~------  262 (409)
T 3jzl_A          196 VIVFVDNCYGEFVEYQEPPEV-------GADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGRE------  262 (409)
T ss_dssp             CEEEEECTTCTTTSSCCSGGG-------TCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGG------
T ss_pred             CEEEEeCCcccccccCCcccc-------CCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhcccccccc------
Confidence            999999999877633222233       78999999999998753 2334444566665544321 11111000      


Q ss_pred             ccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        333 RYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       333 ~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                                .+.....  .++.++.  ......++++..+++.++.+.|++  .|+++.
T Consensus       263 ----------~g~~~~~--~~~~l~g--l~~~~~r~~~~~~~a~~la~~L~~--~g~~v~  306 (409)
T 3jzl_A          263 ----------AGASLYS--LLEMYQG--FFLAPHVTAQAIKGARFTAAMLAE--FGVEAD  306 (409)
T ss_dssp             ----------CCCCTTC--HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH--TTCEEE
T ss_pred             ----------ccccHHH--HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHh--CCCccc
Confidence                      0100111  2333333  455677888999999999999999  467774

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.84  E-value=4.8e-20  Score=183.95  Aligned_cols=315  Identities=14%  Similarity=0.068  Sum_probs=180.5

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        110 FILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      ......+++++++++++ +...++|++|||+|+..+++.++..       .|    + +.+|+.....|.....+....+
T Consensus        90 ~~~~~~~la~~l~~~~~-~~~~v~~~~ggsea~~~al~~a~~~-------~~----~-~~vi~~~~~yhg~~~~~~~~~~  156 (427)
T 3fq8_A           90 PCALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAY-------TG----R-DKIIKFEGCYHGHADMFLVKAG  156 (427)
T ss_dssp             CCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHH-------HC----C-CEEEEEETCCCCSCGGGCSSCC
T ss_pred             CCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHh-------hC----C-CEEEEECCCcCCCCHHHHHhcC
Confidence            34666788899999987 5568999999999999999888753       11    1 3245555555543332221111


Q ss_pred             CC-----------C-----CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHH
Q psy12303        190 LG-----------T-----DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADI  249 (480)
Q Consensus       190 ~~-----------~-----~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i  249 (480)
                      .+           .     ..+..+|.+     |+++|++++++.   +..+++|+++..++++|.+.+    +++|.++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l  228 (427)
T 3fq8_A          157 SGVATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKALFAEN---PGEIAGVILEPIVGNSGFIVPDAGFLEGLREI  228 (427)
T ss_dssp             THHHHHTCCSCSSSCHHHHTTEEEEETT-----CHHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHH
T ss_pred             CcccccCCCCCCCCCCcccCceeecCCC-----CHHHHHHHHHhC---CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHH
Confidence            10           0     124455544     899999999763   123889999999999999988    9999999


Q ss_pred             HHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccc
Q psy12303        250 CQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKL  329 (480)
Q Consensus       250 ~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  329 (480)
                      |++||+++|+|++|+++ ........ ...++ ..|++++  .|.++++.++|+++. ++++++...... .+...    
T Consensus       229 ~~~~~~~li~DEv~~g~-~~g~~~~~-~~~~~-~~di~t~--sK~~~~G~~~G~~~~-~~~~~~~~~~~~-~~~~~----  297 (427)
T 3fq8_A          229 TLEHDALLVFDEVITGF-RIAYGGVQ-EKFGV-TPDLTTL--GKIIGGGLPVGAYGG-KREIMQLVAPAG-PMYQA----  297 (427)
T ss_dssp             HHHTTCEEEEECTTTBT-TTBTTHHH-HHTTC-CCSEEEE--CGGGGTTSSCEEEEE-CHHHHTTBTTTS-SBCCC----
T ss_pred             HHHcCCEEEEecccccc-ccCcchhh-HhcCC-CCChhhh--hhhhhCCcceEEEEE-cHHHHHhhccCC-Ccccc----
Confidence            99999999999999965 32221111 12233 4677665  499987777898875 455444322110 01100    


Q ss_pred             cCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEecCCceeEEEEEeec
Q psy12303        330 YDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP---DKFYLILEPEMVNVSFWYLP  406 (480)
Q Consensus       330 ~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~---~g~~~~~~~~~~~v~f~~~~  406 (480)
                                   .+.....+.+.+++..+..-.-+++.++..++.+++++.|++ .   .++....+.....+.+.+..
T Consensus       298 -------------~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~g~~~~~~~~~  363 (427)
T 3fq8_A          298 -------------GTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLA-IAQETGHAACGGQVSGMFGFFFTE  363 (427)
T ss_dssp             -------------CTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHH-HHHHTTCCCEEEEETTEEEEESSS
T ss_pred             -------------CCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhCCCCeEEEEeeeEEEEEEec
Confidence                         011123344444443321100034455666666666666554 2   12211111223344444322


Q ss_pred             CccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        407 TRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       407 ~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      ....+.  ......-.....++.+.|.++|+++ .+.   +   ..|++ .+..+|++||++++++|+++++++
T Consensus       364 ~~~~~~--~~~~~~~~~~~~~l~~~l~~~Gi~v-~~~---~---~~r~~-~~~~~t~e~i~~~l~~l~~~l~~~  427 (427)
T 3fq8_A          364 GPVHNY--EDAKKSDLQKFSRFHRGMLEQGIYL-APS---Q---FEAGF-TSLAHTEEDIDATLAAARTVMSAL  427 (427)
T ss_dssp             CCCCSH--HHHTTSCHHHHHHHHHHHHHTTEEC-CSS---T---TSCEE-CCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             Cccccc--cccccccHHHHHHHHHHHHHCCcEE-ecC---C---CCCEE-eeCcCCHHHHHHHHHHHHHHHHhC
Confidence            111100  0000000001246778888888443 321   1   12555 567889999999999999987653

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.84  E-value=1.7e-19  Score=180.29  Aligned_cols=312  Identities=12%  Similarity=0.090  Sum_probs=178.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG  191 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~  191 (480)
                      ....+++++++++++ +...++|++|||+|+..++++++..       .     +++.+|+.....|.....+....|.+
T Consensus        95 ~~~~~l~~~la~~~~-~~~~v~~~~sGsea~~~ai~~a~~~-------~-----~~~~vi~~~~~yhg~~~~~~~~~g~~  161 (434)
T 3l44_A           95 ALEVKFAKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVARAY-------T-----GRTKIMKFAGCYHGHSDLVLVAAGSG  161 (434)
T ss_dssp             HHHHHHHHHHHHHCT-TCSEEEEESSHHHHHHHHHHHHHHH-------H-----CCCEEEEETTCCCCSSGGGGBC----
T ss_pred             HHHHHHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHHHHh-------h-----CCCEEEEEcCccCCCcHHHHhhcCCc
Confidence            445567778888887 4568999999999999999998763       1     12434444444454433332222211


Q ss_pred             C----------------CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHH
Q psy12303        192 T----------------DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQ  251 (480)
Q Consensus       192 ~----------------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~  251 (480)
                      .                ..+..+|.+     |+++|++++++..   ..+++|+++..++++|.+.|    +++|.++|+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~  233 (434)
T 3l44_A          162 PSTLGTPDSAGVPQSIAQEVITVPFN-----NVETLKEALDKWG---HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVH  233 (434)
T ss_dssp             ---CCCBSSTTCCHHHHTTEEEECTT-----CHHHHHHHHHHHG---GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHH
T ss_pred             ccccCCCCcCCCCCcCCCceEecCcc-----cHHHHHHHHHhCC---CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHH
Confidence            0                033444433     8999999998642   12788899888888888887    999999999


Q ss_pred             HcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccC
Q psy12303        252 KYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYD  331 (480)
Q Consensus       252 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  331 (480)
                      +||++||+|++|.++ ........ ...++ ..|+++  +.|.++++.++|+++. ++++.+........+..       
T Consensus       234 ~~~illI~DEv~~g~-~~g~~~~~-~~~~~-~~di~t--~sK~~~~G~~iG~~~~-~~~i~~~~~~~~~~~~~-------  300 (434)
T 3l44_A          234 EAGALVIYDEVITAF-RFMYGGAQ-DLLGV-TPDLTA--LGKVIGGGLPIGAYGG-KKEIMEQVAPLGPAYQA-------  300 (434)
T ss_dssp             TTTCEEEEECTTTTT-TSSSSCHH-HHHTC-CCSEEE--EEGGGGTTSSCEEEEE-CHHHHTTBTTTSSBCCC-------
T ss_pred             HcCCEEEEeccccce-eccccHHH-HHcCC-CCCeee--hhhhhcCCcCeeeEEE-cHHHHHhhccCCCcccC-------
Confidence            999999999999876 32221111 12233 467666  5699888889999865 44444332211001110       


Q ss_pred             cccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeEEEEEeecCc
Q psy12303        332 VRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVNVSFWYLPTR  408 (480)
Q Consensus       332 ~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~v~f~~~~~~  408 (480)
                                 .+.....+.+.+++..+..-.-+++.++..++.+++++.|++.   .+.+..+ ++....+.+.+....
T Consensus       301 -----------~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~~~~  368 (434)
T 3l44_A          301 -----------GTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITL-NRLKGALTVYFTTNT  368 (434)
T ss_dssp             -----------CTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEE-EEETTEEEEEESSSC
T ss_pred             -----------CCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEE-EeeccEEEEEEecCc
Confidence                       0111233344433333211000344556666666666666540   2322222 233444555443222


Q ss_pred             cCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        409 VRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       409 ~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ..+.  ......-.....++.+.|.++|++ +.+.   + ...+|++   ..+|++|+++++++|++++++
T Consensus       369 ~~~~--~~~~~~~~~~~~~~~~~l~~~Gv~-v~~~---~-~~~~rl~---~~~t~e~i~~~l~~l~~~l~~  429 (434)
T 3l44_A          369 IEDY--DAAQDTDGEMFGKFFKLMLQEGVN-LAPS---K-YEAWFLT---TEHTKEDIEYTIEAVGRAFAA  429 (434)
T ss_dssp             CCSH--HHHHHSCHHHHHHHHHHHHHTTEE-CCSS---T-TCCEECC---TTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccch--hhccccCHHHHHHHHHHHHHCCeE-Eeec---C-CCcEEEe---cccCHHHHHHHHHHHHHHHHH
Confidence            1110  000000001124577888888844 3331   2 3467865   567999999999999988753

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.83  E-value=1.9e-19  Score=180.48  Aligned_cols=319  Identities=11%  Similarity=0.062  Sum_probs=184.7

Q ss_pred             HHHHHHHHHHHHHHhC-CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIG-WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g-~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      .+...++.+.++++++ .+.++++|++|||+||..++++++..........|....+|+.+|+.....|.....+....|
T Consensus       100 ~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~  179 (449)
T 2cjg_A          100 SVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTN  179 (449)
T ss_dssp             CHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCC
T ss_pred             CHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcC
Confidence            3455667788889887 455689999999999999999886321000000111111135344444445654333222222


Q ss_pred             --------CC--CCCeEEeeCCC--CC--------CCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHH
Q psy12303        190 --------LG--TDNCVEVPSDK--RG--------RLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEE  245 (480)
Q Consensus       190 --------~~--~~~v~~v~~~~--~~--------~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~  245 (480)
                              ..  ...+..+|.++  ..        ..++++|++++++.   +.++++|+++..++++|.+.+    +++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~  256 (449)
T 2cjg_A          180 TKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETR---PHDIACFVAEPIQGEGGDRHFRPEFFAA  256 (449)
T ss_dssp             SCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS---TTTEEEEEECSEETTTTCEECCHHHHHH
T ss_pred             CchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhc---CCceEEEEEeCcCCCCCCccCCHHHHHH
Confidence                    21  12566777654  11        24566688888642   234889998888889998766    999


Q ss_pred             HHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccc
Q psy12303        246 IADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFM  325 (480)
Q Consensus       246 I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~  325 (480)
                      |.++|++||+++|+|++|++.......+.. ...++ ..|+++  +.|++    ++|++++++ ++......   .++..
T Consensus       257 l~~l~~~~g~lli~DEv~~g~g~~g~~~~~-~~~~~-~~di~t--~sK~l----~iG~~~~~~-~~~~~l~~---~~~~~  324 (449)
T 2cjg_A          257 MRELCDEFDALLIFDEVQTGCGLTGTAWAY-QQLDV-APDIVA--FGKKT----QVCGVMAGR-RVDEVADN---VFAVP  324 (449)
T ss_dssp             HHHHHHHTTCEEEEECTTTTTTTTSSSSTH-HHHTC-CCSEEE--ECGGG----SSEEEEECG-GGGGSTTC---TTTST
T ss_pred             HHHHHHHCCcEEEEeccccCCCccCcceee-cccCC-CceEEE--ecCcc----cEEEEEECH-HHhhhhhh---cccCC
Confidence            999999999999999999965332221111 11233 568776  45988    478888754 44432110   01000


Q ss_pred             cccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCC-eEEecCCceeEEE
Q psy12303        326 QDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDK-FYLILEPEMVNVS  401 (480)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g-~~~~~~~~~~~v~  401 (480)
                      . .      ...++   ++..+...++.++++.+..   +++.++..++.+++.+.|++.   .+. +..+ ++...++.
T Consensus       325 ~-~------~~~t~---~~n~~~~~aa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~~~g~~~~  390 (449)
T 2cjg_A          325 S-R------LNSTW---GGNLTDMVRARRILEVIEA---EGLFERAVQHGKYLRARLDELAADFPAVVLDP-RGRGLMCA  390 (449)
T ss_dssp             T-S------SCCSS---SSCHHHHHHHHHHHHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEE-EEETTEEE
T ss_pred             c-c------cccCC---CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeE-eeccEEEE
Confidence            0 0      00000   1111122233333433222   345677778888888888750   344 5433 23444444


Q ss_pred             EEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        402 FWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       402 f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +.+. ..       .       ...++.+.|.++|+++ .+.   + .+++|++ ++..+|+++|++++++|++++++
T Consensus       391 ~~~~-~~-------~-------~~~~~~~~l~~~Gv~v-~~~---g-~~~iRi~-~~~~~t~e~i~~~l~~l~~~l~~  447 (449)
T 2cjg_A          391 FSLP-TT-------A-------DRDELIRQLWQRAVIV-LPA---G-ADTVRFR-PPLTVSTAEIDAAIAAVRSALPV  447 (449)
T ss_dssp             EECS-SH-------H-------HHHHHHHHHHHTTEEC-EEE---T-TTEEEEC-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEC-Ch-------H-------HHHHHHHHHHHCCeEE-ecC---C-CCEEEEE-CCCCCCHHHHHHHHHHHHHHHHH
Confidence            4321 10       0       0245777888888444 332   2 4799999 88899999999999999988754

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.83  E-value=1.8e-19  Score=178.74  Aligned_cols=308  Identities=10%  Similarity=0.082  Sum_probs=193.1

Q ss_pred             cCcCCcchhcChhhHHHHHHHHHHHHHHhCCC-----CCCeE--ECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCce
Q psy12303         97 ANTNMFTYEIAPVFILMETVVLEKMRQIIGWQ-----GGDSI--LAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQL  169 (480)
Q Consensus        97 ~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~-----~~~~~--~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~  169 (480)
                      .......|...++..++++++.+++   .|..     +.++.  .|.+|++|+..+..+++...           .+|+ 
T Consensus        68 ~~~~~~~y~~~~g~~~lr~~ia~~~---~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~-----------~~gd-  132 (409)
T 4eu1_A           68 TLGTNMDYAPVTGIASFVEEAQKLC---FGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFV-----------ANCN-  132 (409)
T ss_dssp             CCCSCCCCCCTTCCHHHHHHHHHHH---HCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTS-----------SSCC-
T ss_pred             CccccccCCCCCCcHHHHHHHHHHH---cCCCchhhccCceeeeecccchHHHHHHHHHHHHhc-----------CCCC-
Confidence            3334445555555566766665555   3554     45664  49999999887765443210           1445 


Q ss_pred             EEEecCCCchhHHHHHHHcCCCCCCeEEeeC--CCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hH
Q psy12303        170 VMFTSDQCHYSVRSCAAVCGLGTDNCVEVPS--DKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IE  244 (480)
Q Consensus       170 ~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~  244 (480)
                      .|+++.++|.++...++..|.   +++.+|.  ++++.+|+++|++++++.   ...++++++++++||||.+.+   ++
T Consensus       133 ~Vlv~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~~~~p~NPtG~~~~~~~l~  206 (409)
T 4eu1_A          133 RIYGPDVGYPNHESIFAKAGM---ELTPYSYYDPATKGLNLAGMLECLDKA---PEGSVILVHACAHNPTGVDPTHDDWR  206 (409)
T ss_dssp             EEEEESSCCTHHHHHHHHTTC---EEEEECCEETTTTEECHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHH
T ss_pred             EEEEeCCCcHhHHHHHHHcCC---eEEEEEeecCcCCcCcHHHHHHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHH
Confidence            888999999999999999998   7888987  346789999999999752   123678888999999999977   55


Q ss_pred             HHHHHHHHcCcEEEeeccccccccccc---cccCcccCCCCCCccceeCccccCCCc-ccceEE--EEeCch----hhHh
Q psy12303        245 EIADICQKYNMWLHVDAAWGGGLLLSK---KYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTI--HFKQDG----LLIS  314 (480)
Q Consensus       245 ~I~~i~~~~~~~l~vD~a~~~~~~~~~---~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~--~~~~~~----~~~~  314 (480)
                      +|.++|++||+++++|++|+.+.....   ......+.+...-.+++.|++|.++.| .++|++  ++.++.    +...
T Consensus       207 ~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~  286 (409)
T 4eu1_A          207 QVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQ  286 (409)
T ss_dssp             HHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHH
T ss_pred             HHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHH
Confidence            599999999999999999988664321   000001111112235667899999854 568887  666665    3222


Q ss_pred             hhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhc--------HHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy12303        315 CNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG--------DEGFEKQIDRLMELAEYMVKKIKSMP  386 (480)
Q Consensus       315 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g--------~~~~~~~~~~~~~l~~~l~~~l~~~~  386 (480)
                      ..........                  +   ...+..+++...+.        .+.++++.++..++++++.+.|++ .
T Consensus       287 ~~~~~~~~~~------------------~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~  344 (409)
T 4eu1_A          287 LALLIRPMYN------------------N---PPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKA-C  344 (409)
T ss_dssp             HHHHHHHHHS------------------S---CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHhhhcC------------------C---CChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence            1110000000                  0   11223333333221        344677888899999999999998 4


Q ss_pred             C--C-eEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCCcccEEEEecccCCCC
Q psy12303        387 D--K-FYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLNDLPNFFRNIISSAAVT  462 (480)
Q Consensus       387 ~--g-~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~~~~~~R~~~~~~~~t  462 (480)
                      .  + +++. +|..+.+.|.    .+.               .+...++. +.| +++.+    +    .|+++. . .+
T Consensus       345 g~~~~~~~~-~~~~~~~~~~----~~~---------------~~~~~~ll~~~g-v~v~p----~----~Ri~~~-~-~~  393 (409)
T 4eu1_A          345 GSVHDWSHI-ERQVGMMAYT----GLT---------------REQVELLRSEYH-IYMTL----N----GRAAVS-G-LN  393 (409)
T ss_dssp             TCCSCCHHH-HHSCSSEEEC----CCC---------------HHHHHHHHHHHC-EECCT----T----CEEEGG-G-CC
T ss_pred             CCCCCccee-cCCceEEEEe----CCC---------------HHHHHHHHHcCC-EEEcC----C----CEEEEE-e-cC
Confidence            2  1 5543 4556666552    110               12334444 446 44443    1    388843 2 45


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy12303        463 EGDIDFLLTEMDRLGH  478 (480)
Q Consensus       463 ~~di~~~~~~l~~~~~  478 (480)
                      +++|++++++|+++++
T Consensus       394 ~~~i~~~~~~l~~~l~  409 (409)
T 4eu1_A          394 STNVEYVSQAIHNVTK  409 (409)
T ss_dssp             TTTHHHHHHHHHHHHC
T ss_pred             HhhHHHHHHHHHHHhC
Confidence            6779999999998753

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.83  E-value=2.5e-19  Score=178.82  Aligned_cols=312  Identities=12%  Similarity=0.050  Sum_probs=182.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG  191 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~  191 (480)
                      ....++++.++++++ +...++|++|||+|+..++++++..       .     +++.+|+.....|.....++...|.+
T Consensus        93 ~~~~~l~~~la~~~~-~~~~v~~~~~Gsea~~~ai~~a~~~-------~-----~~~~vi~~~~~yhg~~~~~~~~~g~~  159 (429)
T 3k28_A           93 EIENKLAKLVIERVP-SIEIVRMVNSGTEATMSALRLARGY-------T-----GRNKILKFIGCYHGHGDSLLIKAGSG  159 (429)
T ss_dssp             HHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHH-------H-----TCCEEEEEETCCCCSCGGGCSSCCTT
T ss_pred             HHHHHHHHHHHHhCC-CCCEEEEeCChHHHHHHHHHHHHHh-------h-----CCCEEEEECCCcCCCcHHHHHhcCCc
Confidence            344566777888886 4567999999999999999998763       1     11434555555665544443333321


Q ss_pred             C----------------CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHH
Q psy12303        192 T----------------DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQ  251 (480)
Q Consensus       192 ~----------------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~  251 (480)
                      .                ..++.+|.+     |+++|++++++..   ..+++|+++..++++|.+.+    +++|.++|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~  231 (429)
T 3k28_A          160 VATLGLPDSPGVPEGVAKNTITVAYN-----DLESVKYAFEQFG---DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTE  231 (429)
T ss_dssp             C-----CCCTTCCHHHHTTEEEEETT-----CHHHHHHHHHHHG---GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHH
T ss_pred             ccccCCCCcCCCCCcccCceeecCCC-----CHHHHHHHHHhCC---CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHH
Confidence            1                023333332     8999999998532   13788999888888898888    999999999


Q ss_pred             HcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccC
Q psy12303        252 KYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYD  331 (480)
Q Consensus       252 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  331 (480)
                      +||+++|+|++|.++ ........ ...++ ..|+++  +.|.++++.++|+++.+ +++.+........+..       
T Consensus       232 ~~~~~li~DEv~~g~-~~g~~~~~-~~~~~-~~di~t--~sK~~~~G~~iG~~~~~-~~~~~~~~~~~~~~~~-------  298 (429)
T 3k28_A          232 QNGALLIFDEVMTGF-RVAYNCGQ-GYYGV-TPDLTC--LGKVIGGGLPVGAYGGK-AEIMRQVAPSGPIYQA-------  298 (429)
T ss_dssp             HHTCEEEEECTTTTT-TSSTTHHH-HHHTC-CCSEEE--ECGGGGTTSCCEEEEEC-HHHHTTBTTTSSBCCC-------
T ss_pred             HcCCEEEEecccccc-ccCcchHH-HHhCC-CCceeh--hhhhhcCCCCeEEEEEc-HHHHhhhccCCCcccc-------
Confidence            999999999999865 32211111 11233 467766  55999877889988764 4444332211100100       


Q ss_pred             cccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEecCCceeEEEEEeecCc
Q psy12303        332 VRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDKFYLILEPEMVNVSFWYLPTR  408 (480)
Q Consensus       332 ~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g~~~~~~~~~~~v~f~~~~~~  408 (480)
                                 .+.....+.+.+++..+.... ++..++..++.+++.+.|++.   .+.+..+ ++....+.+.+....
T Consensus       299 -----------~t~~~~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~~~~  365 (429)
T 3k28_A          299 -----------GTLSGNPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHI-NRAGSMIGIFFTDEP  365 (429)
T ss_dssp             -----------CTTTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEE-EEETTEEEEESSSSC
T ss_pred             -----------CCCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEE-EeeccEEEEEEecCC
Confidence                       011123444444443331101 456667777777777776650   2332222 233344445443221


Q ss_pred             cCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        409 VRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       409 ~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      ..+.  ......-.....++.+.|.++|++ +.+.   + .+.+|++   ..+|++|+++++++|+++++++
T Consensus       366 ~~~~--~~~~~~~~~~~~~~~~~l~~~Gv~-v~~~---~-~~~~r~~---~~~t~e~i~~~l~~l~~~l~~~  427 (429)
T 3k28_A          366 VINY--DAAKSSNLQFFAAYYREMVEQGVF-LPPS---Q-FEGLFLS---TVHSDADIEATIAAAEIAMSKL  427 (429)
T ss_dssp             CCSH--HHHTTSCHHHHHHHHHHHHHTTEE-CCSS---T-TSCBCCC---TTCCHHHHHHHHHHHHHHHHTC
T ss_pred             cccc--cccccccHHHHHHHHHHHHHCCeE-EecC---C-CCCEEEE---CCCCHHHHHHHHHHHHHHHHHH
Confidence            1100  000000000124677888888844 3331   2 3567765   5789999999999999987653

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.82  E-value=3.1e-19  Score=176.06  Aligned_cols=223  Identities=12%  Similarity=0.053  Sum_probs=156.8

Q ss_pred             HHHHHHHHHHhCCCCCCeEE---CCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecC-CCchhHHHH------
Q psy12303        115 TVVLEKMRQIIGWQGGDSIL---APGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSD-QCHYSVRSC------  184 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~---t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~-~~h~s~~~~------  184 (480)
                      .++.+.+++++|.+.  .++   ++|||+||..++.+..+              ||| .|+++. ..|......      
T Consensus        77 ~~Le~~lA~l~g~e~--alv~p~~~sGt~A~~~al~all~--------------pGD-~Vl~~~~~~y~~~~~~~g~~~~  139 (427)
T 3hvy_A           77 DSLDRVYANIFNTES--AFVRPHFVNGTHAIGAALFGNLR--------------PND-TMMSICGMPYDTLHDIIGMDDS  139 (427)
T ss_dssp             HHHHHHHHHHHTCSE--EEEETTCCSHHHHHHHHHHHTCC--------------TTC-EEEECSSSCCGGGHHHHTCCTT
T ss_pred             HHHHHHHHHHhCCCc--eEEeCCCCcHHHHHHHHHHHhcC--------------CCC-EEEEeCCCCchhHHHHhccccc
Confidence            345566999999976  455   89999999988877643              666 677776 677665533      


Q ss_pred             -----HHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEecc----CCCccccccChHHHHHHHHH--c
Q psy12303        185 -----AAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTS----GTTVLGAFDPIEEIADICQK--Y  253 (480)
Q Consensus       185 -----~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~----~~~~~G~~~~l~~I~~i~~~--~  253 (480)
                           +...|+   +++.++. +++.+|+++|++++++.    .+|++|++++    ++|++|.+.|+++|.++|++  +
T Consensus       140 ~~~~~l~~~G~---~~~~v~~-~~~~~d~e~l~~~i~~~----~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~  211 (427)
T 3hvy_A          140 KKVGSLREYGV---KYKMVDL-KDGKVDINTVKEELKKD----DSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNE  211 (427)
T ss_dssp             CCSCCTGGGTC---EEEECCC-BTTBCCHHHHHHHHHHC----TTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCS
T ss_pred             hhhhHHHHcCC---EEEEecC-CCCCcCHHHHHHHhhCC----CCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCC
Confidence                 333455   7888888 67899999999999831    1289999999    99999999999999999999  8


Q ss_pred             CcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcc--cceEEEEeCchhhHhhhcC-Cccccccccccc
Q psy12303        254 NMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL--QCSTIHFKQDGLLISCNQM-SAEYLFMQDKLY  330 (480)
Q Consensus       254 ~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~--~~g~~~~~~~~~~~~~~~~-~~~~l~~~~~~~  330 (480)
                      |+++++|+||+.+.........       ++|+++.|+||+++++.  ..|+++ .++++.+..... ....+..     
T Consensus       212 g~~livD~a~~~~~~~~~p~~~-------gaDiv~~S~sK~lgg~g~~~GG~i~-~~~~li~~l~~~~~~~~~g~-----  278 (427)
T 3hvy_A          212 NVIVFVDNCYGEFVEEKEPTDV-------GADIIAGSLIKNIGGGIATTGGYIA-GKEEYVTQATFRVTVPGIGG-----  278 (427)
T ss_dssp             SSEEEEECTTCTTTSSSCGGGG-------TCSEEEEETTSGGGTTTCCSCEEEE-ECHHHHHHHHHHHSCTTTGG-----
T ss_pred             CCEEEEECCccccccCCCCccc-------CCeEEEECCcccccccccceEEEEE-ECHHHHHHHHHHhhcCCccc-----
Confidence            9999999999887643222233       78999999999998642  235555 456555544321 1111100     


Q ss_pred             CcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        331 DVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       331 ~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                                 ..+-.+.  .+|+.++.  ......+.++..+++.++.+.|++  .|+++.
T Consensus       279 -----------~~~~~~~--~a~~~~~g--l~~~~~r~~~~~~~a~~la~~L~~--~g~~V~  323 (427)
T 3hvy_A          279 -----------ECGSTFG--VMRSLYEG--LFMAPHVTIEAVKGAVFCARIMEL--AGFDVL  323 (427)
T ss_dssp             -----------GCCCCTT--CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH--TTCEEE
T ss_pred             -----------ccCCCHH--HHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHh--CCCeec
Confidence                       0111011  13444433  445567888999999999999999  466774

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.82  E-value=5.4e-19  Score=183.27  Aligned_cols=315  Identities=16%  Similarity=0.124  Sum_probs=193.8

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCC
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD  193 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~  193 (480)
                      -.++.+.+|+++|.+. ..++++|+|.||..++.+..+              ||+ .|+++..+|.|+..++...|.   
T Consensus       197 i~eaE~~lA~~fGa~~-a~~v~nGts~An~~ai~al~~--------------pGD-~VLv~r~~H~S~~~~l~lsGa---  257 (715)
T 3n75_A          197 HKEAEQYIARVFNADR-SYMVTNGTSTANKIVGMYSAP--------------AGS-TILIDRNCHKSLTHLMMMSDV---  257 (715)
T ss_dssp             HHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHCC--------------TTC-EEEEESSCCHHHHHHHHHSCC---
T ss_pred             HHHHHHHHHHHhCCCC-ceEECcHHHHHHHHHHHHhCC--------------CCC-EEEECCCccHHHHHHHHHcCC---
Confidence            3456677999999975 345566667999888887754              556 899999999999999999988   


Q ss_pred             CeEEeeCCCC-CC----C-----CHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccc
Q psy12303        194 NCVEVPSDKR-GR----L-----IPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       194 ~v~~v~~~~~-~~----~-----d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                      ++++++.+.+ +.    +     |+++|++++++... ...|++|+++++ |++|.+.|+++|.++|+++  ++++|+||
T Consensus       258 ~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~-~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~--~livDEAH  333 (715)
T 3n75_A          258 TPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGLLYNTDFIKKTLDVK--SIHFDSAW  333 (715)
T ss_dssp             EEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTT-CCSCSEEEEESS-CTTSEEECHHHHHHHCCCS--EEEEECTT
T ss_pred             EEEEEeccccccccccCcccccCCHHHHHHHHhhCcC-ccCceEEEEECC-CCCCccCCHHHHHHHhCcC--cEEEcccc
Confidence            7778876532 32    4     89999999986421 112458999999 8999999999999999876  38999999


Q ss_pred             ccccccccccc-CcccCCCCCCccc---eeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCc
Q psy12303        264 GGGLLLSKKYR-HPRLTGIERADSV---TWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDK  339 (480)
Q Consensus       264 ~~~~~~~~~~~-~~~~~~~~~~D~~---~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  339 (480)
                      +.+..+.+... ...+..-..+|.+   +.|+||+++++.++|++++++........ ....++..+...          
T Consensus       334 ~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~-~~~~~~~STSps----------  402 (715)
T 3n75_A          334 VPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFN-EAYMMHTTTSPH----------  402 (715)
T ss_dssp             CTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHH-HHHHHTSCSSCC----------
T ss_pred             ccccccCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHH-HHHHhhcCCCch----------
Confidence            98765444332 1011111136776   89999999998889999987652111111 001111110000          


Q ss_pred             cccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC------eEEecCCcee-EEEEEe--------
Q psy12303        340 VIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDK------FYLILEPEMV-NVSFWY--------  404 (480)
Q Consensus       340 ~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g------~~~~~~~~~~-~v~f~~--------  404 (480)
                       +     ....++-.+++.+..+.-.++.++..++++++++.|++ +++      ++++.+.... .-||..        
T Consensus       403 -y-----~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~g  475 (715)
T 3n75_A          403 -Y-----GIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKR-LRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHG  475 (715)
T ss_dssp             -H-----HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTC
T ss_pred             -H-----HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH-hhhhcccceeeccCcccccchhhhccCccccccc
Confidence             0     01112222333333222255778999999999999988 654      5666433211 111211        


Q ss_pred             -----------ecCcc----CCCchh-hH-HHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHH
Q psy12303        405 -----------LPTRV----RNMPHE-KR-LNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDID  467 (480)
Q Consensus       405 -----------~~~~~----~~~~~~-~~-~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~  467 (480)
                                 .|.++    .+.+.+ .+ ...+.  ...+.+.|.+.| +.+..+.    .+.+-+. .++..|+++++
T Consensus       476 f~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~--g~~~~~~L~~~~-I~~E~~d----~~~vl~l-~s~g~~~~~~~  547 (715)
T 3n75_A          476 FKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIP--ASIVAKYLDEHG-IVVEKTG----PYNLLFL-FSIGIDKTKAL  547 (715)
T ss_dssp             CTTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCC--HHHHHHHHHHTT-CCCSEEE----TTEEEEE-CCTTCCHHHHH
T ss_pred             ccccccCcccCCCeEEEEEcCCCCCCCccccCCCc--HHHHHHHHHHCC-CEEEecC----CCcEEEE-eCCCCCHHHHH
Confidence                       11110    000000 00 00010  124556666665 4444332    3455555 77889999999


Q ss_pred             HHHHHHHHhh
Q psy12303        468 FLLTEMDRLG  477 (480)
Q Consensus       468 ~~~~~l~~~~  477 (480)
                      +++++|.++.
T Consensus       548 ~L~~aL~~~~  557 (715)
T 3n75_A          548 SLLRALTDFK  557 (715)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.82  E-value=2.9e-18  Score=171.11  Aligned_cols=314  Identities=11%  Similarity=0.078  Sum_probs=173.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG  191 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~  191 (480)
                      ....+++++++++++ ....++|++|||+|+..++++++..       .|     ++.+|+.....|.....++...+.+
T Consensus        93 ~~~~~la~~l~~~~~-~~~~v~~~~sGsea~~~al~~a~~~-------~~-----~~~ii~~~~~yhg~~~~~~~~~~~~  159 (429)
T 4e77_A           93 EMEVKMAQLVTDLVP-TMDMVRMVNSGTEATMSAIRLARGY-------TG-----RDKIIKFEGCYHGHADCLLVKAGSG  159 (429)
T ss_dssp             HHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHH-------HC-----CCEEEEETTCCCC------------
T ss_pred             HHHHHHHHHHHhhCC-CCCEEEEeCcHHHHHHHHHHHHHHh-------hC-----CCEEEEEcCccCCCChhhhhhcCCc
Confidence            555677888999887 4567999999999999999988753       11     1335555556666655333222211


Q ss_pred             C----------------CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHH
Q psy12303        192 T----------------DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQ  251 (480)
Q Consensus       192 ~----------------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~  251 (480)
                      .                ..+..++.+     |+++|++++++.   +..+++|+++..+++.|.+.|    +++|.++|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~  231 (429)
T 4e77_A          160 ALTLGQPNSPGVPTDFAKHTLTCTYN-----DLASVRQAFEQY---PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCD  231 (429)
T ss_dssp             ------CCCTTSCGGGGTTEEEECTT-----CHHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHH
T ss_pred             ccccCCCCcCCCCCccCCceeecCCC-----CHHHHHHHHHhc---CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHH
Confidence            0                022333332     899999999752   223788888877777888877    999999999


Q ss_pred             HcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccC
Q psy12303        252 KYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYD  331 (480)
Q Consensus       252 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  331 (480)
                      +||+++|+|++|+++ ........ ...++ ..|+++  +.|.++++.+.|+++. +++..+........+..       
T Consensus       232 ~~~~lli~DEv~~g~-r~g~~~~~-~~~~~-~pdi~t--~sK~~~~G~~~G~~~~-~~~~~~~l~~~~~~~~~-------  298 (429)
T 4e77_A          232 EFGALLIIDEVMTGF-RVALAGAQ-DYYHV-IPDLTC--LGKIIGGGMPVGAFGG-RREVMNALAPTGPVYQA-------  298 (429)
T ss_dssp             HHTCEEEEEETTTBT-TTBTTCHH-HHTTC-CCSEEE--EEGGGGTTSCCEEEEE-CHHHHTTBTTTSSBCC--------
T ss_pred             HcCCEEEEeccccCc-ccCcchHH-HhcCC-CCCeee--ecccccCCCCeEEEEE-CHHHHHHhccCCCcccc-------
Confidence            999999999999966 32222111 22233 457765  5699987788898775 44444332211100110       


Q ss_pred             cccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEecCCceeEEEEEeecCc
Q psy12303        332 VRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP---DKFYLILEPEMVNVSFWYLPTR  408 (480)
Q Consensus       332 ~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~---~g~~~~~~~~~~~v~f~~~~~~  408 (480)
                           +      +.....+.+.+++..+..-.-+++.++..++.+++++.|++ .   .++....+....++.+.+....
T Consensus       299 -----~------t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~g~~~~~~~~~~~  366 (429)
T 4e77_A          299 -----G------TLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRH-AAKEENIPLVVNHVGGMFGLFFTNAD  366 (429)
T ss_dssp             ------------CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHH-HHHHTTCCCEEEEETTEEEEECCSSS
T ss_pred             -----C------CCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhCCCceEEEEeeeEEEEEEccCc
Confidence                 0      11123334443333321100134455566666666666554 2   1222111223334444432210


Q ss_pred             cCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        409 VRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       409 ~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      . ..+-......-.....++.+.|.++|++ +.+.   + ...+|+   +..+|++|+++++++|+++++++
T Consensus       367 ~-~~~~~~~~~~~~~~~~~~~~~l~~~Gi~-v~~~---~-~~~~~~---~~~~t~e~i~~~l~~l~~~l~~~  429 (429)
T 4e77_A          367 T-VTCYQDVMNCDVERFKRFFHLMLEEGVY-LAPS---A-FEAGFM---SLAHSNEDIQKTVNAARRCFAKL  429 (429)
T ss_dssp             C-CCSHHHHHTSCHHHHHHHHHHHHHTTEE-CCSS---T-TSCEEC---CTTCCHHHHHHHHHHHHHHHTTC
T ss_pred             c-cccccccccccHHHHHHHHHHHHHCCeE-Eeec---C-CCCEEE---eccCCHHHHHHHHHHHHHHHHhC
Confidence            0 0000000000001124677888888844 3331   1 234454   46789999999999999988754

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.81  E-value=9.5e-19  Score=174.90  Aligned_cols=310  Identities=13%  Similarity=0.108  Sum_probs=180.1

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH---
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV---  187 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~---  187 (480)
                      .....+++++++++++ ....++|++|||+|+..+++++|..       .     +++.+|+.....|.....+...   
T Consensus        95 ~~~~~~l~~~la~~~~-~~~~v~~~~sgseA~~~al~~ar~~-------~-----~~~~vi~~~~~yhg~~~~~~~~~~~  161 (434)
T 2epj_A           95 GEAEVLLAEKILGYVK-RGGMIRFVNSGTEATMTAIRLARGY-------T-----GRDLILKFDGCYHGSHDAVLVAAGS  161 (434)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCEEEEESSHHHHHHHHHHHHHHH-------H-----CCCEEEEEETCCCCSSGGGSEECC-
T ss_pred             CHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHh-------h-----CCCeEEEEcCCcCCCCHHHHHhcCC
Confidence            4556678888999885 3457999999999999999987642       1     1143555554455433222111   


Q ss_pred             ----------cCCC---CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHH
Q psy12303        188 ----------CGLG---TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADIC  250 (480)
Q Consensus       188 ----------~g~~---~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~  250 (480)
                                .|+.   ...+..+|.+     |+++|++++++..   .++++|+++..++++|.+.|    +++|.++|
T Consensus       162 ~~~~~~~p~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~  233 (434)
T 2epj_A          162 AAAHYGVPTSAGVPEAVARLTLVTPYN-----DVEALERVFAEYG---DRIAGVIVEPVIANAGVIPPRREFLAALQRLS  233 (434)
T ss_dssp             -----CEESSTTCCHHHHTTEEEEETT-----CHHHHHHHHHHHG---GGEEEEEECSSBCSSSCBCCCHHHHHHHHHHH
T ss_pred             CccccCCCCCCCCCCcccCceEecCCC-----CHHHHHHHHHhCC---CCEEEEEEeCCcCCCCccCCCHHHHHHHHHHH
Confidence                      1221   0135666653     8999999997531   13788888888788999888    99999999


Q ss_pred             HHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccccccc
Q psy12303        251 QKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLY  330 (480)
Q Consensus       251 ~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  330 (480)
                      ++||+++|+|++|+++ ........ ...++ .+|+++  ++|+++++.++|+++.++ +.++........+.       
T Consensus       234 ~~~g~~lI~DEv~~g~-~~g~~~~~-~~~~~-~~di~s--~sK~l~~G~~~G~v~~~~-~~~~~l~~~~~~~~-------  300 (434)
T 2epj_A          234 RESGALLILDEVVTGF-RLGLEGAQ-GYFNI-EGDIIV--LGKIIGGGFPVGAVAGSR-EVMSLLTPQGKVFN-------  300 (434)
T ss_dssp             HHHTCEEEEEETTTTT-TSSTTHHH-HHHTC-CCSEEE--EEGGGGTTSSCEEEEECH-HHHTTBTTTSSBCC-------
T ss_pred             HHcCCEEEEEcchhce-eCCcchhh-HHhCC-CCCeee--ecchhcCCcceeeeeecH-HHHHhhccCCCccc-------
Confidence            9999999999999965 32221111 11233 467765  569998777889988754 44432211000000       


Q ss_pred             CcccCCCCccccCCCCCCchHHHH---HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEecCCceeEEEEEe
Q psy12303        331 DVRYDTGDKVIQCGRHNDIFKLWL---QWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP---DKFYLILEPEMVNVSFWY  404 (480)
Q Consensus       331 ~~~~~~~~~~~~~~r~~~~l~~~~---~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~---~g~~~~~~~~~~~v~f~~  404 (480)
                           .+++      ..+.+.+.+   +++.+..   ++..++..++++++.+.|++ +   .++....++...++.+.+
T Consensus       301 -----~~t~------~~~~~~~aa~~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~g~~~~i~~  365 (434)
T 2epj_A          301 -----AGTF------NAHPITMAAGLATLKALEE---EPVYSVSREAAKALEEAASE-VLDRTGLPYTINRVESMMQLFI  365 (434)
T ss_dssp             -----CCTT------TTCHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHH-HHHHHTCCEEEEEETTEEEEEE
T ss_pred             -----CCCC------CcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHH-HHhhCCCcEEEEEeeeEEEEEE
Confidence                 0000      122333333   3333211   34667777888888888876 4   133211123334444443


Q ss_pred             ecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        405 LPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       405 ~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ...............  .....++.+.|.++|+ ++.+.   + ...+|+   +..+|++|+++++++|++++++
T Consensus       366 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~Gv-~v~~~---~-~~~~~~---~~~~t~e~i~~~l~~l~~~l~~  430 (434)
T 2epj_A          366 GVEEVSNAAQARKAD--KKFYVKLHEEMLRRGV-FIAPS---N-LEAVFT---GLPHQGEALEIAVEGLRSSLKT  430 (434)
T ss_dssp             TCSCCSSHHHHTTSC--HHHHHHHHHHHHHTTE-ECCSS---T-TSCEEC---CTTCSHHHHHHHHHHHHHHHHH
T ss_pred             eCCCcccchhccccC--HHHHHHHHHHHHHCCe-EEecc---C-CCcEEE---eccCCHHHHHHHHHHHHHHHHH
Confidence            221110000000000  0012467788888884 34332   1 223454   4678999999999999987654

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.80  E-value=3.6e-18  Score=168.91  Aligned_cols=308  Identities=13%  Similarity=0.079  Sum_probs=181.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG  191 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~  191 (480)
                      ..+.++.+.++++++. ...+.|+++||+||+.|++.+|..       .|.     +..|......|.........-+-.
T Consensus       127 ~~~~~lae~l~~~~p~-~~~v~f~~SGsEA~e~AiklAr~~-------tgr-----~~ii~~~~~yHG~t~~~~~~~~~~  193 (454)
T 4ao9_A          127 LLEGRLARLICERFPQ-IEQLRFTNSGTEANLMALTAALHF-------TGR-----RKIVVFSGGYHGGVLGFGARPSPT  193 (454)
T ss_dssp             SSHHHHHHHHHHHSTT-CSEEEEESSHHHHHHHHHHHHHHH-------HTC-----CEEEEETTCBCSTTCBBSSSBCTT
T ss_pred             HHHHHHHHHHHHhCCC-CCEEEEeCchHHHHHHHHHHHHhc-------ccC-----CeEEEEeCCcCCccccccccccCc
Confidence            3455677778888753 246999999999999999999875       222     324555566666432211111111


Q ss_pred             --CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEEEeeccccc
Q psy12303        192 --TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWLHVDAAWGG  265 (480)
Q Consensus       192 --~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l~vD~a~~~  265 (480)
                        ...+..+|.+     |++++++.+++.   +..+++|++.......|.+.|    +++|.++|++||++||+|+++.|
T Consensus       194 ~~~~~~~~~p~n-----d~~~l~~~l~~~---~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG  265 (454)
T 4ao9_A          194 TVPFDFLVLPYN-----DAQTARAQIERH---GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS  265 (454)
T ss_dssp             SCCSEEEEECTT-----CHHHHHHHHHHT---GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG
T ss_pred             cCCCCcccCCCc-----hHHHHHHHHhhc---CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC
Confidence              1123445554     899999999764   234899999999999999877    99999999999999999999984


Q ss_pred             cccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCC
Q psy12303        266 GLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGR  345 (480)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r  345 (480)
                        .....+.. ...|+ .+|+++  +.|.++++++.|++..+. ++++........+...           +++   .+.
T Consensus       266 --R~G~~~a~-e~~gv-~PDi~t--~gK~lggG~Piga~~~~~-ei~~~~~~~~~~~~h~-----------~T~---~gn  324 (454)
T 4ao9_A          266 --RLAPHGLA-NKLGI-RSDLTT--LGKYIGGGMSFGAFGGRA-DVMALFDPRTGPLAHS-----------GTF---NNN  324 (454)
T ss_dssp             --GGSTTCHH-HHHTC-CCSEEE--EEGGGGTTSSCEEEEECH-HHHGGGCTTTCSCCCC-----------CTT---TTC
T ss_pred             --CCccccch-hccCC-CCcEEE--eccccCCCCcceeeeeHH-HHHHHHhhccCCcccc-----------CCC---CCC
Confidence              32222222 33455 689988  569888888899988654 4444322111111100           111   111


Q ss_pred             CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCC-eEEecCCceeEEEEEeecCccCCCchh-hHHHH
Q psy12303        346 HNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDK-FYLILEPEMVNVSFWYLPTRVRNMPHE-KRLNI  420 (480)
Q Consensus       346 ~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g-~~~~~~~~~~~v~f~~~~~~~~~~~~~-~~~~~  420 (480)
                      +....+..++|+.+-.+   +..++..++.++|++.|++.   .+- .++-  -...++.+.+........... .....
T Consensus       325 Pla~AAala~L~~l~~~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vr--g~G~m~gi~f~~~~~~~~~~~~~~d~~  399 (454)
T 4ao9_A          325 VMTMAAGYAGLTKLFTP---EAAGALAERGEALRARLNALCANEGVAMQFT--GIGSLMNAHFVQGDVRSSEDLAAVDGR  399 (454)
T ss_dssp             HHHHHHHHHHHHHTSCH---HHHHHHHHHHHHHHHHHHHHHHHHTBSCEEE--EETTEEEEESCCSCCCSGGGGTTCCHH
T ss_pred             HHHHHHHHHHHHHHhcc---ChhHHHHHHHHHHHHHHHHHHhhCCCCEEEe--eeceEEEEEEecCCCCCHHHHHhhhHH
Confidence            12233344445554333   33455556666666665540   221 1221  123344555544332221111 11111


Q ss_pred             hhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        421 LGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       421 l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                         +...+...|.++|+ ++.+      .+.+.   ++..+|++|||+++++|++++.+
T Consensus       400 ---~~~~~~~~ll~~Gv-~~~p------~~~~~---~s~~~T~~dId~~l~al~~~l~~  445 (454)
T 4ao9_A          400 ---LRQLLFFHLLNEDI-YSSP------RGFVV---LSLPLTDADIDRYVAAIGSFIGG  445 (454)
T ss_dssp             ---HHHHHHHHHHHTTE-ECCT------TCEEE---CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHCCE-EEcC------CCCEE---EeCCCCHHHHHHHHHHHHHHHHh
Confidence               22456778889984 3332      12333   34557999999999999998754

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.80  E-value=2.9e-18  Score=172.29  Aligned_cols=313  Identities=11%  Similarity=0.062  Sum_probs=174.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH--
Q psy12303        110 FILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV--  187 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~--  187 (480)
                      ..+++.+++++++++++ +.+.+++++|||+|+..++++++..       .+    + +.+|+.....|.....+...  
T Consensus        95 ~~~~~~~la~~l~~~~~-~~~~v~~~~gg~eA~~~al~~ar~~-------~~----~-~~vi~~~~~yhg~~~~~~~~~~  161 (453)
T 2cy8_A           95 SHPLEVRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVARAF-------TG----R-RMILRFEGHYHGWHDFSASGYN  161 (453)
T ss_dssp             SCHHHHHHHHHHHHHCT-TCSEEEEESCHHHHHHHHHHHHHHH-------HC----C-CEEEEECC--------------
T ss_pred             CCHHHHHHHHHHHhhCC-CCCEEEEeCCHHHHHHHHHHHHHHh-------hC----C-CEEEEEcCCcCCCchhhHhhcC
Confidence            46788899999999986 5567999999999999999987642       11    1 32455544445333322221  


Q ss_pred             --------cCCCC---CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHH
Q psy12303        188 --------CGLGT---DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQK  252 (480)
Q Consensus       188 --------~g~~~---~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~  252 (480)
                              .|+..   ..+..+|.     .|+++|++++++..   .++++|+++..++++|.+.|    +++|.++|++
T Consensus       162 ~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~---~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~  233 (453)
T 2cy8_A          162 SHFDGQPAPGVLPETTANTLLIRP-----DDIEGMREVFANHG---SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQ  233 (453)
T ss_dssp             --------------CGGGEEEECT-----TCHHHHHHHHHHHG---GGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHH
T ss_pred             CccCCCcCCCCCccccCceeecCC-----CCHHHHHHHHHhcC---CCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHH
Confidence                    12210   12444544     38999999998531   13788888887788998877    9999999999


Q ss_pred             cCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCc
Q psy12303        253 YNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDV  332 (480)
Q Consensus       253 ~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  332 (480)
                      ||+++++|++|+++ ........ ...++ ..|+++  ++|+++++.++|+++.++ ++.+............       
T Consensus       234 ~g~~lI~DEv~~g~-~~g~~~~~-~~~~~-~~di~s--~sK~l~~G~~~G~v~~~~-~~~~~l~~~~~~~~~~-------  300 (453)
T 2cy8_A          234 YGALFILDEVISGF-RVGNHGMQ-ALLDV-QPDLTC--LAKASAGGLPGGILGGRE-DVMGVLSRGSDRKVLH-------  300 (453)
T ss_dssp             TTCEEEEECTTTTT-TTCTTHHH-HHHTC-CCSEEE--EEGGGGTTSSCEEEEECH-HHHTTSSSCC-------------
T ss_pred             cCCEEEEecCcccc-ccCchhhh-HHhCC-CCcEEE--EChhhhCCcceEEEechH-HHHHHhccccCCCcee-------
Confidence            99999999999965 32211111 11233 467664  669998777899988754 4443221100000000       


Q ss_pred             ccCCCCccccCCCCCCchHHHHHHHHhcH-HHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEecCCceeEEEEEeec--
Q psy12303        333 RYDTGDKVIQCGRHNDIFKLWLQWRAKGD-EGFEKQIDRLMELAEYMVKKIKSMP---DKFYLILEPEMVNVSFWYLP--  406 (480)
Q Consensus       333 ~~~~~~~~~~~~r~~~~l~~~~~l~~~g~-~~~~~~~~~~~~l~~~l~~~l~~~~---~g~~~~~~~~~~~v~f~~~~--  406 (480)
                         .+      +-....+.+.+++..+.. - .++..++..++++++.+.|++ .   .++....++...++.+.+.+  
T Consensus       301 ---~~------t~~~n~~~~aa~~aal~~~~-~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~g~~~~i~~~~~~  369 (453)
T 2cy8_A          301 ---QG------TFTGNPITAAAAIAAIDTIL-EDDVCAKINDLGQFAREAMNH-LFARKGLNWLAYGRFSGFHLMPGLPP  369 (453)
T ss_dssp             ------------CCCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHH-HHHHTTCCEEEECCTTEEEEEETSCT
T ss_pred             ---CC------CCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHH-HHhhCCCcEEEEEeeeEEEEEEeccc
Confidence               00      001233333333333221 1 244567777788888887765 3   13321123444455554421  


Q ss_pred             ---C-ccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        407 ---T-RVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       407 ---~-~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                         . ...+.........  ....++.+.|.++|+++ .+    .  +.+|+   +..+++++|++++++|++++++
T Consensus       370 ~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~Gv~v-~~----~--~~~~l---~~~~t~~~i~~~l~~l~~~l~~  434 (453)
T 2cy8_A          370 NTTDTGSITRAEVARPDV--KMIAAMRMALILEGVDI-GG----R--GSVFL---SAQHEREHVEHLVTTFDRVLDR  434 (453)
T ss_dssp             TCCCCHHHHTTCSCCCCH--HHHHHHHHHHHHTTEEC-BT----T--TEEEC---CTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccH--HHHHHHHHHHHHCCeEE-eC----C--CCEEe---eccCCHHHHHHHHHHHHHHHHH
Confidence               0 0000000000000  01245777888888443 22    2  23553   4778999999999999987653

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.79  E-value=2e-17  Score=166.58  Aligned_cols=314  Identities=16%  Similarity=0.096  Sum_probs=182.1

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCC-------------CccCC---ceEEEec
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGL-------------SAIKG---QLVMFTS  174 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~-------------~~~~g---~~~vl~~  174 (480)
                      .++++++.+.++++++.+...++|++|||+||..|+++++....  .+.+|.             ...||   +.+|...
T Consensus       109 ~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~--~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~  186 (472)
T 1ohv_A          109 ENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYR--SKERGQSAFSKEELETCMINQAPGCPDYSILSFM  186 (472)
T ss_dssp             TTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHH--HHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEET
T ss_pred             HHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhh--hhccCcccccccccccccccccccCCCCeEEEEC
Confidence            56677777767777654455799999999999999999974210  000010             00123   4355556


Q ss_pred             CCCchhHHHHHHHcCCC--------CCCeEEeeCCC-CC-------------CCCHHHHHHHHHHHHHCCCccEEEEecc
Q psy12303        175 DQCHYSVRSCAAVCGLG--------TDNCVEVPSDK-RG-------------RLIPSELERLVLERKAKGDIPFFVNCTS  232 (480)
Q Consensus       175 ~~~h~s~~~~~~~~g~~--------~~~v~~v~~~~-~~-------------~~d~~~L~~~i~~~~~~~~~~~~v~~~~  232 (480)
                      ...|.+...++...|..        ...+..++... .+             ..|+++|+++|++....+.++++|+++.
T Consensus       187 ~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~  266 (472)
T 1ohv_A          187 GAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEP  266 (472)
T ss_dssp             TCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             CCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcC
Confidence            66777766666655431        00111223211 01             1268899999987433222489999998


Q ss_pred             CCCccccccC----hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCC-CCccceeCccccC-CCcccceEEEE
Q psy12303        233 GTTVLGAFDP----IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIE-RADSVTWNPHKLM-GTLLQCSTIHF  306 (480)
Q Consensus       233 ~~~~~G~~~~----l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~-~~D~~~~s~hK~~-~~p~~~g~~~~  306 (480)
                      .++++|.+.|    +++|.++|++||+++|+|++|+++......+.. ...++. .+|+++++  |++ ++    |+++ 
T Consensus       267 v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~-~~~gv~~~~Di~t~s--K~~l~G----G~~~-  338 (472)
T 1ohv_A          267 IQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAH-EHWGLDDPADVMTFS--KKMMTG----GFFH-  338 (472)
T ss_dssp             SBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGG-GGGCCSSCCSEEEEC--GGGSSE----EEEE-
T ss_pred             CcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhc-cccCCCCCCCEEEEc--cccccC----CccC-
Confidence            8899999877    999999999999999999999864332111111 122331 27887654  984 42    4443 


Q ss_pred             eCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy12303        307 KQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP  386 (480)
Q Consensus       307 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~  386 (480)
                       .+.+ .   .......            .+++   ++......++.++++.+..   .++.++..+++++|.+.|++ +
T Consensus       339 -~~~~-~---~~~~~~~------------~~T~---~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~-l  394 (472)
T 1ohv_A          339 -KEEF-R---PNAPYRI------------FNTW---LGDPSKNLLLAEVINIIKR---EDLLSNAAHAGKVLLTGLLD-L  394 (472)
T ss_dssp             -CGGG-S---CSSSSSS------------CCSS---SSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHH-H
T ss_pred             -chhh-c---ccccccc------------cCcc---CccHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHH-H
Confidence             3222 1   0011000            0110   1111122233334443322   34567777888888888765 3


Q ss_pred             ----CC-eEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCC
Q psy12303        387 ----DK-FYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAV  461 (480)
Q Consensus       387 ----~g-~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~  461 (480)
                          |+ +..+ .+...++.+.+ +..       .       ....+.+.|.++|+++. +.   + .+++|++ ++..+
T Consensus       395 ~~~~~~~v~~~-~~~g~~~~~~~-~~~-------~-------~~~~~~~~l~~~Gv~~~-~~---g-~~~iRi~-~~~~~  452 (472)
T 1ohv_A          395 QARYPQFISRV-RGRGTFCSFDT-PDE-------S-------IRNKLISIARNKGVMLG-GC---G-DKSIRFR-PTLVF  452 (472)
T ss_dssp             HHHCTTTCEEE-EEETTEEEEEC-SSH-------H-------HHHHHHHHHHHTTEECE-EE---T-TTEEEEC-CCTTC
T ss_pred             HhhCCCcEEee-cCCceEEEEEe-CCh-------h-------HHHHHHHHHHHCCeEEe-cC---C-CCEEEEE-CCCCC
Confidence                43 3322 23333444422 110       0       12457778888885443 31   2 4699999 88999


Q ss_pred             CHHHHHHHHHHHHHhhccC
Q psy12303        462 TEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       462 t~~di~~~~~~l~~~~~~l  480 (480)
                      |++||++++++|+++++++
T Consensus       453 t~e~i~~~~~~l~~~l~~~  471 (472)
T 1ohv_A          453 RDHHAHLFLNIFSDILADF  471 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHHhc
Confidence            9999999999999987653

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.79  E-value=4.6e-18  Score=167.35  Aligned_cols=290  Identities=10%  Similarity=0.007  Sum_probs=182.4

Q ss_pred             cchhcChhh-----HHHHHHHHHHHHHHhCC--CC-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCc---eE
Q psy12303        102 FTYEIAPVF-----ILMETVVLEKMRQIIGW--QG-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQ---LV  170 (480)
Q Consensus       102 ~~~~~~~~~-----~~~e~~~~~~la~~~g~--~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~---~~  170 (480)
                      ..|....+.     .++++.+.+++. ..|.  .+ .++++|+|+++++..++.+..+              ||+   ..
T Consensus        57 ~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~--------------~Gd~~~~~  121 (391)
T 3bwn_A           57 SYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRYIVVGTGSTQLCQAAVHALSS--------------LARSQPVS  121 (391)
T ss_dssp             SSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSEEEEEEHHHHHHHHHHHHHHH--------------TSSSSSEE
T ss_pred             hcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCeEEEeCChHHHHHHHHHHhcC--------------CCCCCcce
Confidence            345444454     677777777665 3454  23 5799999999999999988865              333   27


Q ss_pred             EEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHH
Q psy12303        171 MFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADIC  250 (480)
Q Consensus       171 vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~  250 (480)
                      |+++.++|+++...++..|.   +++.++.|.++ +.        .      .++++|++++++||||.+.+  +|++  
T Consensus       122 Vlv~~P~y~~~~~~~~~~g~---~~~~~~~d~~~-l~--------~------~~~k~v~l~~p~NPtG~~~~--~l~~--  179 (391)
T 3bwn_A          122 VVAAAPFYSTYVEETTYVRS---GMYKWEGDAWG-FD--------K------KGPYIELVTSPNNPDGTIRE--TVVN--  179 (391)
T ss_dssp             EEECSSCCTHHHHHHHTTCB---TTEEEEEESTT-CC--------C------CSCEEEEEESSCTTTCCCCC--CCC---
T ss_pred             EEEcCCCchhHHHHHHHcCC---eEEEecCCHHH-cC--------C------CCCEEEEECCCCCCCchhHH--HHHH--
Confidence            88999999999999999887   66778876542 11        0      23889999999999999975  5544  


Q ss_pred             HHcC--cEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccc
Q psy12303        251 QKYN--MWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQD  327 (480)
Q Consensus       251 ~~~~--~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  327 (480)
                      ++++  +++++|++|.....      . .+....+.++++.|++|.++.| ..+|++++.++.+......... +...  
T Consensus       180 ~~~~~~~~ii~De~y~~~~~------~-~l~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~-~~~~--  249 (391)
T 3bwn_A          180 RPDDDEAKVIHDFAYYWPHY------T-PITRRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYII-VNSI--  249 (391)
T ss_dssp             ----CCCEEEEECTTCSTTT------S-CCCCCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHH-HHHS--
T ss_pred             HhhcCCCEEEEeCCCCCCCC------C-ccccCCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhc-cccc--
Confidence            2255  99999999974210      0 1111225678899999999744 5679988756555443321110 0000  


Q ss_pred             cccCcccCCCCccccCCCCCCchHHHHHHHHh--c----------HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC
Q psy12303        328 KLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--G----------DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP  395 (480)
Q Consensus       328 ~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--g----------~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~  395 (480)
                                     +   ...+...++...+  +          .+.++++.++..++++++.+.|++ .+++++..+.
T Consensus       250 ---------------~---~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~p~  310 (391)
T 3bwn_A          250 ---------------G---VSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKE-SDAFTLPKYP  310 (391)
T ss_dssp             ---------------S---CCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHT-CSSEECCCCC
T ss_pred             ---------------C---CCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHh-CCCcccccCC
Confidence                           0   1222222222222  1          235677888889999999999999 7888764321


Q ss_pred             ------------ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCc-ccEEEEecccCCCC
Q psy12303        396 ------------EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDL-PNFFRNIISSAAVT  462 (480)
Q Consensus       396 ------------~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~-~~~~R~~~~~~~~t  462 (480)
                                  ..+.+.+.-.+..                 ..+...+.+.|+.+... ...+. .+++|+++.   ++
T Consensus       311 ~~~~~f~~~~~~~~g~~~~~~~~~~-----------------~~~~~~l~~~gV~v~pg-~~fg~~~~~iRis~~---~~  369 (391)
T 3bwn_A          311 EAFCNYFGKSLESYPAFAWLGTKEE-----------------TDLVSELRRHKVMSRAG-ERCGSDKKHVRVSML---SR  369 (391)
T ss_dssp             CEEETTTTEEECCCCSEEEEEESSS-----------------CCHHHHHHHTTEECEEG-GGGTCCTTEEEEESC---SC
T ss_pred             ccccccccccCCCcceEEEecCCcH-----------------HHHHHHHHHCCEEEccC-CCCCCCCCEEEEEec---CC
Confidence                        1122333222211                 12345566777544432 22222 579999944   38


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy12303        463 EGDIDFLLTEMDRLGH  478 (480)
Q Consensus       463 ~~di~~~~~~l~~~~~  478 (480)
                      ++++++++++|+++++
T Consensus       370 ~e~i~~~~~~L~~~~~  385 (391)
T 3bwn_A          370 EDVFNVFLERLANMKL  385 (391)
T ss_dssp             HHHHHHHHHHHHSCC-
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998765

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.79  E-value=2.1e-17  Score=158.41  Aligned_cols=310  Identities=16%  Similarity=0.138  Sum_probs=195.1

Q ss_pred             hcChhhHHHHHHHHHHHHHHhCCCCCC---eEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCC---c
Q psy12303        105 EIAPVFILMETVVLEKMRQIIGWQGGD---SILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQC---H  178 (480)
Q Consensus       105 ~~~~~~~~~e~~~~~~la~~~g~~~~~---~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~---h  178 (480)
                      .......++|.-.++..+++||++...   -+-.-||+.||+.+..++.+              ||| .|+..+..   |
T Consensus        93 gGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~--------------PGD-~ilg~~l~~GGH  157 (490)
T 3ou5_A           93 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ--------------PHD-RIMGLDLPDGGH  157 (490)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC---------------CC-CEECBC------
T ss_pred             CCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcC--------------CCC-EEEecccCCCCc
Confidence            344556789999999999999998752   25566889999999988865              667 66666655   4


Q ss_pred             hhHH-----HHHHHcCCCCCCeEEeeCC-CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHH
Q psy12303        179 YSVR-----SCAAVCGLGTDNCVEVPSD-KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQK  252 (480)
Q Consensus       179 ~s~~-----~~~~~~g~~~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~  252 (480)
                      .++.     +.....|.-. +.+..++| +++.+|.+++++..++.+     |++|++  |.+..-...|++++.+||++
T Consensus       158 ltHg~~~~~~~v~~sg~~~-~~~~Y~vd~~t~~IDyd~~~~~A~~~k-----PklIi~--G~SaY~r~id~~~~reIAd~  229 (490)
T 3ou5_A          158 LTHGYMSDVKRISATSIFF-ESMPYKLNPKTGLIDYNQLALTARLFR-----PRLIIA--GTSAYARLIDYARMREVCDE  229 (490)
T ss_dssp             -----------------------CBCEETTTTEECHHHHHHHHHHHC-----CSEEEE--CCSSCCSCCCHHHHHHHHHH
T ss_pred             ccccccCCCcccccccccc-cccccccCCCCCcccHHHHHHHHhhcC-----CCeEEE--CCccCccccCHHHHHHHHhh
Confidence            3333     2223333311 33444555 468999999999998863     889887  55556667899999999999


Q ss_pred             cCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCch--------------hhHhhhcC
Q psy12303        253 YNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDG--------------LLISCNQM  318 (480)
Q Consensus       253 ~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~--------------~~~~~~~~  318 (480)
                      .|++|++|.||-.|.+....+..| +   +.+|+++.+.||.+.+|. .|++++++..              +.......
T Consensus       230 vGA~Lm~DmAHiaGLVA~g~~psP-~---~~ADvVTtTTHKTLrGPr-GG~Il~~~~~~~~~~k~~~~~~~~~~kkin~a  304 (490)
T 3ou5_A          230 VKAHLLADMAHISGLVAAKVIPSP-F---KHADIVTTTTHKTLRGAR-SGLIFYRKGVKAVDPKTGREIPYTFEDRINFA  304 (490)
T ss_dssp             HTCEEEEECGGGHHHHHTTSSCCG-G---GTCSEEEEESSSTTCSCS-CEEEEEECSEEEECC--CCEEECCCHHHHHHH
T ss_pred             cccEEEechhhhhhhhcccccCCc-c---ccceEEeccccccccCCC-ceEEEeccccccccccccchhHHHHHHHHHhh
Confidence            999999999999988876665553 2   368999999999999876 5777777631              11111100


Q ss_pred             CcccccccccccCcccCCCCccccCCCCCCch-HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-Cc
Q psy12303        319 SAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIF-KLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-PE  396 (480)
Q Consensus       319 ~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l-~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~~  396 (480)
                          .+.              +++++-....+ +...+++..-...+.++.++..++++.|.+.|.+  .|+.++.. ..
T Consensus       305 ----VFP--------------g~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~--~G~~vvsGgTd  364 (490)
T 3ou5_A          305 ----VFP--------------SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE--RGYSLVSGGTD  364 (490)
T ss_dssp             ----HTT--------------TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSCS
T ss_pred             ----cCc--------------cccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh--CCCeeecCCCC
Confidence                000              11222222222 2223343322445688899999999999999999  79999863 33


Q ss_pred             eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCC-----cccEEEEec---ccCCCCHHHHHH
Q psy12303        397 MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLND-----LPNFFRNII---SSAAVTEGDIDF  468 (480)
Q Consensus       397 ~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~-----~~~~~R~~~---~~~~~t~~di~~  468 (480)
                      ...+.+...+..+.              .++..+.|-+.|+. +.....++     ....+|+..   ......++|+++
T Consensus       365 nHlvLvDl~~~g~t--------------G~~ae~~Le~agIt-vNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~  429 (490)
T 3ou5_A          365 NHLVLVDLRPKGLD--------------GARAERVLELVSIT-ANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRR  429 (490)
T ss_dssp             SSEEEEECGGGTCC--------------HHHHHHHHHHTTEE-CEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHH
T ss_pred             ceEEEEeccccCCC--------------HHHHHHHHHHcCcE-ECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHH
Confidence            44455543333222              23444555566643 32211111     145799984   345678899999


Q ss_pred             HHHHHHHhh
Q psy12303        469 LLTEMDRLG  477 (480)
Q Consensus       469 ~~~~l~~~~  477 (480)
                      +.+.|.+++
T Consensus       430 IA~~I~~~l  438 (490)
T 3ou5_A          430 VVDFIDEGV  438 (490)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887754

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.79  E-value=4.7e-16  Score=154.47  Aligned_cols=382  Identities=14%  Similarity=0.078  Sum_probs=222.1

Q ss_pred             CCCCCCCCCHHHHHHHHHhhccCCccCCCC-----------------CccccccC------CCChHHhHHHHHHHHcCcC
Q psy12303         44 LDIPEKGLPLQKLIDDCFTTLKYQVRTGHP-----------------MFMNQLSC------GLDVVSMAGEWLIATANTN  100 (480)
Q Consensus        44 ~~~p~~~~~~~~i~~~~~~~~~~~~~~~~p-----------------~~~~~~~~------~~~~~~~~~~~l~~~~~~~  100 (480)
                      -.+|  |....++++..++.++.+.....|                 +|+++..+      +...+.+.. .+...+..-
T Consensus        20 t~iP--GP~s~~l~~r~~~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~-Ai~~q~~~~   96 (456)
T 4atq_A           20 GAFP--GPKSQALAERRSAVVAAGVASGVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVA-AVQEAAAHF   96 (456)
T ss_dssp             SSSS--CHHHHHHHHHHHHHBCTTCCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHH-HHHHHHHHC
T ss_pred             CCCC--ChHHHHHHHHHHHhCCCCCCCCCCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHH-HHHHHHhhc
Confidence            3445  334678888888888766533323                 35554322      444555553 332222211


Q ss_pred             CcchhcChhhHHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCch
Q psy12303        101 MFTYEIAPVFILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHY  179 (480)
Q Consensus       101 ~~~~~~~~~~~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~  179 (480)
                      .+... .....+.+.++.+.+++++..+ ...++|+++||+||..|++.||..       .|.     +..|......|.
T Consensus        97 ~~~~~-~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~-------t~r-----~~ii~~~~~yHG  163 (456)
T 4atq_A           97 THTCF-MVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLA-------TGR-----DAVVAFDHAYHG  163 (456)
T ss_dssp             SCCTT-TTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH-------HCC-----CEEEEETTCCCC
T ss_pred             cCccc-CccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhh-------hcC-----CeEEEEecccCC
Confidence            11100 0111244456778888888653 245889999999999999999875       221     324555566677


Q ss_pred             hHHHHHHHcCCC----------CCCeEEeeCCCC------CCCCHHHHHHHHHHHH--HCCCccEEEEeccCCCcccccc
Q psy12303        180 SVRSCAAVCGLG----------TDNCVEVPSDKR------GRLIPSELERLVLERK--AKGDIPFFVNCTSGTTVLGAFD  241 (480)
Q Consensus       180 s~~~~~~~~g~~----------~~~v~~v~~~~~------~~~d~~~L~~~i~~~~--~~~~~~~~v~~~~~~~~~G~~~  241 (480)
                      ....+....+..          ...+..+|....      ..-+.+.+++.++...  ..+..+++|++...+...|.+.
T Consensus       164 ~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~  243 (456)
T 4atq_A          164 RTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIV  243 (456)
T ss_dssp             SSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBC
T ss_pred             ccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccc
Confidence            766666554421          124566665421      1224555555554322  1344589999999998888885


Q ss_pred             C----hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhc
Q psy12303        242 P----IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQ  317 (480)
Q Consensus       242 ~----l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~  317 (480)
                      |    +++|.++|++||+++|+|+++.|+......+.+ ...|+ ..|+++++  |.+++.++.|.++.+++ .....  
T Consensus       244 p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~-e~~gv-~PDivt~g--K~lggg~P~~av~~~~~-i~~~~--  316 (456)
T 4atq_A          244 PAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAV-DHEGV-VPDIITMA--KGIAGGLPLSAITGRAD-LLDAV--  316 (456)
T ss_dssp             CCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG-GGTTC-CCSEEEEC--GGGGTTSSCEEEEEEHH-HHTTS--
T ss_pred             cchhhhHHHHHHHhhcCCceEecccccccCCccccccc-cccCC-CCchhhhh--hcccCcCCceeeEecHH-HHhcc--
Confidence            5    899999999999999999999997666555555 55667 68999964  88887888999987654 32221  


Q ss_pred             CCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCC--eEEe
Q psy12303        318 MSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDK--FYLI  392 (480)
Q Consensus       318 ~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g--~~~~  392 (480)
                       .+....            +++   .+.+....++.++|+.+-.++   +.++..++.++|.+.|++.   .+.  ..++
T Consensus       317 -~~~~~~------------~Tf---~gnpla~aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v  377 (456)
T 4atq_A          317 -HPGGLG------------GTY---GGNPVACAAALAAIDTMEQHD---LNGRARHIEELALGKLRELAAELSAGGGSVV  377 (456)
T ss_dssp             -CTTSSC------------CSS---SSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCC-----CE
T ss_pred             -cccCCC------------CCC---CCChHHHHhhHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHhcccccCCce
Confidence             111100            001   111122333334444443333   4455666666666655540   221  1222


Q ss_pred             cCC--ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHH
Q psy12303        393 LEP--EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLL  470 (480)
Q Consensus       393 ~~~--~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~  470 (480)
                      .+.  .+.++.+.+..+... ...       .+...++.+.+.++|.++... ...  .+.+|++ +....|+++||+++
T Consensus       378 ~~VRG~Gl~~giel~~~~~~-~~~-------~~~~~~v~~~~~~~Gvl~~~~-g~~--~~~irl~-PpL~it~~~id~~l  445 (456)
T 4atq_A          378 GDIRGRGAMLAIELVQPGSK-EPN-------AELTKAVAAACLKEGVIILTC-GTY--GNVIRLL-PPLVISDELLIDGL  445 (456)
T ss_dssp             EEEEEETTEEEEEEBCTTSC-CBC-------HHHHHHHHHHHHHTTEECEEE-CTT--SCEEEEC-CCTTCCHHHHHHHH
T ss_pred             EEeeecceEEEEEEecCCCC-CcC-------HHHHHHHHHHHHHCCCEEEec-CCC--CCEEEEE-CCCCCCHHHHHHHH
Confidence            221  122334444322211 011       112356788899999654432 211  4689999 98999999999999


Q ss_pred             HHHHHhhcc
Q psy12303        471 TEMDRLGHD  479 (480)
Q Consensus       471 ~~l~~~~~~  479 (480)
                      +.|++.++.
T Consensus       446 ~~l~~al~a  454 (456)
T 4atq_A          446 EVLAAAIKA  454 (456)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988763

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.79  E-value=6.6e-18  Score=168.45  Aligned_cols=326  Identities=12%  Similarity=0.060  Sum_probs=195.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEE-ecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMF-TSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl-~~~~~h~s~~~~~~~~g  189 (480)
                      .+.+.++.+.|+++.+.+-..+.|++|||+||..|++++|..    ...+|.   +++..|+ .....|.....++...|
T Consensus       110 ~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~----~~~~g~---~~r~~ii~~~~~yHG~t~~a~s~tg  182 (473)
T 4e3q_A          110 SDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFL----HAAEGK---PQKRKILTRWNAYHGVTAVSASMTG  182 (473)
T ss_dssp             EHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHH----HHHTTC---TTCCEEEEETTCCCCSSHHHHHHSC
T ss_pred             CHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHH----HHhcCC---CCcceEEEeeceECCCccccccccc
Confidence            344556788899998766567999999999999999999864    123443   3333444 45556776666665544


Q ss_pred             C--------CCCCeEEeeCCC------CCCCC-------HHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hH
Q psy12303        190 L--------GTDNCVEVPSDK------RGRLI-------PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IE  244 (480)
Q Consensus       190 ~--------~~~~v~~v~~~~------~~~~d-------~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~  244 (480)
                      .        ....+..++...      .+..+       .+++++.+.+.  ....+++|++...+...|.+.|    ++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAavi~EPiqg~gG~~~p~~~fl~  260 (473)
T 4e3q_A          183 KPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQRE--GADTIAGFFAEPVMGAGGVIPPAKGYFQ  260 (473)
T ss_dssp             CGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHH--CGGGEEEEEECSSBSTTTSBCCCTTHHH
T ss_pred             cccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhh--CCCceEEEEeCCccCCCCceeCCHHHHH
Confidence            2        112344444321      11111       23455555432  2234889999999998898855    89


Q ss_pred             HHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCC---c
Q psy12303        245 EIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMS---A  320 (480)
Q Consensus       245 ~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~---~  320 (480)
                      +|.++|++||++||+|+++.|+......+.. ...++ ..|++++  .|.++++ .+.|+++++++ +.+......   .
T Consensus       261 ~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~-e~~gv-~PDi~t~--~K~l~gG~~Pl~av~~~~~-i~~~~~~~~~~~~  335 (473)
T 4e3q_A          261 AILPILRKYDIPVISDEVICGFGRTGNTWGC-VTYDF-TPDAIIS--SKNLTAGFFPMGAVILGPE-LSKRLETAIEAIE  335 (473)
T ss_dssp             HHHHHHHHTTCCEEEECTTTSSSTTSSSCHH-HHTTC-CCSEEEE--CGGGGTTSSCCEEEEECHH-HHHHHHHHHHHHS
T ss_pred             HHHHHhcccceEEeccCccccCCcccchhHH-HhcCC-CCChHHh--cccccCCCCCcccccccHH-HHHHhcccccccc
Confidence            9999999999999999999998765555444 45566 6899984  5988777 78999987654 333221100   0


Q ss_pred             ccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC--CCCeEEecCCcee
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM--PDKFYLILEPEMV  398 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~--~~g~~~~~~~~~~  398 (480)
                      .+. +.                .+.....+++.+++..+..-.-+.+.++..++.++|.+.|++.  .|.+.-+ .-.+.
T Consensus       336 ~~~-hg----------------~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~v-RG~Gl  397 (473)
T 4e3q_A          336 EFP-HG----------------FTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEY-RGIGF  397 (473)
T ss_dssp             CCC-CC----------------CTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSTTEEEE-EEETT
T ss_pred             ccc-cC----------------CCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhcCCCeeEE-eecce
Confidence            111 00                1111234444444433221111334566667777777777651  2443211 11122


Q ss_pred             EEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        399 NVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       399 ~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      ++.+.+.......... +..   ..+...+.+.+.++|.++...      .+.+|++ +....|++|||++++.+++.++
T Consensus       398 ~~gielv~~~~~~~~~-~~~---~~~~~~~~~~~~~~Gll~~~~------g~~i~l~-PPL~it~~eid~~~~~l~~al~  466 (473)
T 4e3q_A          398 MWALEAVKDKASKTPF-DGN---LSVSERIANTCTDLGLICRPL------GQSVVLC-PPFILTEAQMDEMFDKLEKALD  466 (473)
T ss_dssp             EEEEEECSBTTTTBCC-CGG---GCHHHHHHHHHHHTTEECEEE------TTEEEEC-CCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCccccccc-ccc---HHHHHHHHHHHHHCCcEEEec------CCEEEEe-CCCCCCHHHHHHHHHHHHHHHH
Confidence            3334333221110000 000   112356788899999654332      3689998 8899999999999999988765


Q ss_pred             c
Q psy12303        479 D  479 (480)
Q Consensus       479 ~  479 (480)
                      +
T Consensus       467 ~  467 (473)
T 4e3q_A          467 K  467 (473)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.79  E-value=1.1e-18  Score=173.13  Aligned_cols=224  Identities=11%  Similarity=0.049  Sum_probs=156.8

Q ss_pred             HHHHHHHHHHHhCCCCCCe-EECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecC-CCchhHHHHHHH----
Q psy12303        114 ETVVLEKMRQIIGWQGGDS-ILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSD-QCHYSVRSCAAV----  187 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~-~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~-~~h~s~~~~~~~----  187 (480)
                      .+++.+++++++|.+.... ++++|||+||..++.++..              ||+ .|+++. ..|.++...+..    
T Consensus        67 ~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~--------------~Gd-~Vl~~~~~~y~~~~~~~~l~g~~  131 (431)
T 3ht4_A           67 RDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILR--------------PGD-ELLYITGKPYDTLEEIVGVRGKG  131 (431)
T ss_dssp             HHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCC--------------TTC-EEEECSSSCCTTHHHHTTSSSCS
T ss_pred             HHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCC--------------CCC-EEEEeCCCCchhHHHHHhhcccc
Confidence            5667888999999975322 1245889999988876543              556 677776 889888876643    


Q ss_pred             ------cCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEecc----CCCccccccChHHHHHHHHH--cCc
Q psy12303        188 ------CGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTS----GTTVLGAFDPIEEIADICQK--YNM  255 (480)
Q Consensus       188 ------~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~----~~~~~G~~~~l~~I~~i~~~--~~~  255 (480)
                            .|.   +++.++.++++.+|+++|+++++++      |++|++++    +++++|...++++|.++|++  +|+
T Consensus       132 ~~~~~~~G~---~~~~v~~~~~~~~d~e~l~~~l~~~------tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~  202 (431)
T 3ht4_A          132 VGSFKEYNI---GYNAVPLTEGGLVDFEAVAAAIHSN------TKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDV  202 (431)
T ss_dssp             SSCSGGGTC---EEEECCBCTTSSBCHHHHHHHCCTT------EEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTC
T ss_pred             cchHHHcCC---EEEEeCCCCCCCcCHHHHHhhcCCC------CeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCC
Confidence                  455   7899999888999999999999764      89999997    77777778899999999999  999


Q ss_pred             EEEeeccccccccccccccCcccCCCCCCccceeCccccCCC---cccceEEEEeCchhhHhhhcC-CcccccccccccC
Q psy12303        256 WLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGT---LLQCSTIHFKQDGLLISCNQM-SAEYLFMQDKLYD  331 (480)
Q Consensus       256 ~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~---p~~~g~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~  331 (480)
                      ++++|++|+.+.........       ++|+++.|++|++++   |.| |+++. ++++.+..... ....+..      
T Consensus       203 ~livDea~~~~~~~~~~~~~-------g~Di~~~S~sK~lgg~~~~~G-G~v~~-~~~li~~l~~~~~~~~~g~------  267 (431)
T 3ht4_A          203 VVFVDNCYGEFIEEQEPCHV-------GADLMAGSLIKNPGGGIVKTG-GYIVG-KEQYVEACAYRLTSPGIGA------  267 (431)
T ss_dssp             EEEEECTTCTTSSSCCGGGT-------TCSEEEEETTSGGGTTTCSSC-EEEEE-CHHHHHHHHHHHSCTTTTT------
T ss_pred             EEEEeCCChhhccCCCcccc-------CCeEEEcCccccCCCCCCCce-EEEEe-cHHHHHHHHHHhccCCccc------
Confidence            99999999988753333333       689999999999765   344 66665 45554443210 1110100      


Q ss_pred             cccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        332 VRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       332 ~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                                ..+..+..  .++.++  +......++++..++++++.+.|++  .|+++.
T Consensus       268 ----------~~~~~~~~--~~~~~~--~l~~~~~~~~~~~~~a~~l~~~L~~--~g~~v~  312 (431)
T 3ht4_A          268 ----------EAGASLYS--LQEMYQ--GFFLAPHVAGQALKGAIFTAAFLEK--LGMNTS  312 (431)
T ss_dssp             ----------SCSCCCSC--SHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH--HTCCEE
T ss_pred             ----------ccCccHHH--HHHHHh--HhhhHHHHHHHHHHHHHHHHHHHHh--CcCEec
Confidence                      01111111  122222  2344577788899999999999998  466664

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.78  E-value=1.2e-17  Score=166.47  Aligned_cols=309  Identities=13%  Similarity=0.113  Sum_probs=176.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      ..+..++.++++++++ +.+.+++++|||+|+..+++++|...            +++.+|+.....|.....+....|.
T Consensus        91 ~~~~~~l~~~l~~~~~-~~~~v~~~~~g~ea~~~al~~ar~~~------------~~~~vi~~~~~yhg~~~~~~~~~~~  157 (424)
T 2e7u_A           91 SPLEVALAKKVKRAYP-FVDLVRFVNSGTEATMSALRLARGYT------------GRPYIVKFRGNYHGHADGLLVEAGS  157 (424)
T ss_dssp             CHHHHHHHHHHHHHCT-TCCEEEEESSHHHHHHHHHHHHHHHH------------CCCEEEEETTCCCCCCGGGSEECCS
T ss_pred             CHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhh------------CCCEEEEECCCcCCCcHHHHHhcCC
Confidence            4566778888999886 45679999999999999999876421            1143555555555433322221111


Q ss_pred             -----------CC-----CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHH
Q psy12303        191 -----------GT-----DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADIC  250 (480)
Q Consensus       191 -----------~~-----~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~  250 (480)
                                 +.     ..++.+|.+     |+++|++++++..   ..+++|+++..++++|.+.|    +++|.++ 
T Consensus       158 ~~~~~~~p~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-  228 (424)
T 2e7u_A          158 GALTLGVPSSAGVPEEYAKLTLVLEYN-----DPEGLREVLKRRG---EEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-  228 (424)
T ss_dssp             SSCCBCEESSTTCCHHHHTTEEEECTT-----CHHHHHHHHHHHG---GGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-
T ss_pred             cccccCCCCCCCCCCccCCceEeCCCC-----CHHHHHHHHHhCC---CCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-
Confidence                       10     135555543     8999999997531   12778887776666898877    9999999 


Q ss_pred             HHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccccccc
Q psy12303        251 QKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLY  330 (480)
Q Consensus       251 ~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  330 (480)
                      ++||+++++|++|+++ ........ ...++ ..|++  +++|+++++.++|+++.++ ++.+........+.       
T Consensus       229 ~~~g~~lI~DEv~~g~-~~g~~~~~-~~~~~-~~di~--s~sK~l~~G~~~G~~~~~~-~~~~~~~~~~~~~~-------  295 (424)
T 2e7u_A          229 KAYGVLLIADEVMTGF-RLAFGGAT-ELLGL-KPDLV--TLGKILGGGLPAAAYAGRR-EIMEKVAPLGPVYQ-------  295 (424)
T ss_dssp             GGGTCEEEEECTTTTT-TSSTTHHH-HHHTC-CCSEE--EECGGGGTTSSCEEEEECH-HHHTTBTTTSSBCC-------
T ss_pred             HHcCCEEEEecCcccc-ccchhHHH-HHhCC-Ccchh--hhhhhhhCCcceEEEEEcH-HHHhhhcccCCccc-------
Confidence            9999999999999965 32221111 12233 46766  4679999777889988754 44433221000000       


Q ss_pred             CcccCCCCccccCCCCCCchHHHHHHHHhcH-HHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEecCCceeEEEEEeec
Q psy12303        331 DVRYDTGDKVIQCGRHNDIFKLWLQWRAKGD-EGFEKQIDRLMELAEYMVKKIKSMP---DKFYLILEPEMVNVSFWYLP  406 (480)
Q Consensus       331 ~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~-~~~~~~~~~~~~l~~~l~~~l~~~~---~g~~~~~~~~~~~v~f~~~~  406 (480)
                           .+++      ..+.+.+.+++..+.. +..+++.++..++.+++.+.|++ .   .++....++...++.+.+..
T Consensus       296 -----~~t~------~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~g~~~~i~~~~  363 (424)
T 2e7u_A          296 -----AGTL------SGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKE-VLKEKGLPHTVNRVGSMITVFFTE  363 (424)
T ss_dssp             -----CCTT------CSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHH-HHHHTTCCCEEEEETTEEEEESSS
T ss_pred             -----CCCC------CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-HHHhCCCceEEEeeceEEEEEEeC
Confidence                 0000      1223333333333211 11245677778888888888876 4   13321112333444443321


Q ss_pred             CccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        407 TRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       407 ~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      .............  .....++.+.|.++|+ ++.+..    ...+|+   +..+|++++++++++|+++
T Consensus       364 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~Gv-~v~~~~----~~~~~~---~~~~t~~~i~~~l~~l~~~  423 (424)
T 2e7u_A          364 GPVVTFQDARRTD--TELFKRFFHGLLDRGI-YWPPSN----FEAAFL---SVAHREEDVEKTLEALRKA  423 (424)
T ss_dssp             SCCCSHHHHTTSC--HHHHHHHHHHHHTTTE-ECCSSS----SSCEEC---CTTCCHHHHHHHHHHHHHH
T ss_pred             CCCcchhhhcccC--HHHHHHHHHHHHHCCe-EEeccC----CCceEe---eccCCHHHHHHHHHHHHHh
Confidence            1110000000000  0012467788888884 443321    123453   4678999999999999875

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.78  E-value=2e-17  Score=162.86  Aligned_cols=306  Identities=11%  Similarity=-0.012  Sum_probs=197.7

Q ss_pred             CCcchhcChhhHHHHHHHHHHHHHHhCC--CCCC--eEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecC
Q psy12303        100 NMFTYEIAPVFILMETVVLEKMRQIIGW--QGGD--SILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSD  175 (480)
Q Consensus       100 ~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~--~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~  175 (480)
                      ....|....+..++.+.+.+|+.+..+.  ++++  +++|+|+++|+..++.+..+.            .| + .|+++.
T Consensus        64 ~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~------------~~-d-~Vlv~~  129 (405)
T 3k7y_A           64 KEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKML------------NV-E-TLYVTN  129 (405)
T ss_dssp             CCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTT------------TC-C-EEEEES
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhc------------CC-C-EEEEeC
Confidence            3456766777888888888888554443  2343  589999999999998877642            04 4 889999


Q ss_pred             CCchhHHHHHHHcCCCCCCeEEeeC-CC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccC-CCccccccC---hHHHHHH
Q psy12303        176 QCHYSVRSCAAVCGLGTDNCVEVPS-DK-RGRLIPSELERLVLERKAKGDIPFFVNCTSG-TTVLGAFDP---IEEIADI  249 (480)
Q Consensus       176 ~~h~s~~~~~~~~g~~~~~v~~v~~-~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~-~~~~G~~~~---l~~I~~i  249 (480)
                      ++++.+...++..|.   +++.+|+ ++ ++.+|+++|++++++.    .++++|+++.+ +||||.+.+   +++|+++
T Consensus       130 P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~----~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~  202 (405)
T 3k7y_A          130 PPYINHVNMIESRGF---NLKYINFFDYNLIDINYDLFLNDLRNI----PNGSSVILQISCYNPCSVNIEEKYFDEIIEI  202 (405)
T ss_dssp             SCCHHHHHHHHTTTC---EEEEECCEETTTTEECHHHHHHHHHHS----CSSCEEEECCSSCTTTCCCCCHHHHHHHHHH
T ss_pred             CCCHhHHHHHHHcCC---eEEEEeccccccCCcCHHHHHHHHHhC----CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHH
Confidence            999999999999998   8888987 33 5889999999999752    12567777654 899999966   6778899


Q ss_pred             HHHcCcEEEeecccccccccc-ccc--cCcccCCCCCCccceeCccccCC-CcccceEEEE--eCchhhHhhhcC-----
Q psy12303        250 CQKYNMWLHVDAAWGGGLLLS-KKY--RHPRLTGIERADSVTWNPHKLMG-TLLQCSTIHF--KQDGLLISCNQM-----  318 (480)
Q Consensus       250 ~~~~~~~l~vD~a~~~~~~~~-~~~--~~~~~~~~~~~D~~~~s~hK~~~-~p~~~g~~~~--~~~~~~~~~~~~-----  318 (480)
                      |++|++++++|++|....... +..  ....+.....--+++.|++|.++ .+..+|++++  .+++........     
T Consensus       203 ~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~  282 (405)
T 3k7y_A          203 VLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIV  282 (405)
T ss_dssp             HHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             HHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHH
Confidence            999999999999998765321 100  00011111112355679999998 5578999864  444433221100     


Q ss_pred             CcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh-----c---HHHHHHHHHHHHHHHHHHHHHHh----cCC
Q psy12303        319 SAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK-----G---DEGFEKQIDRLMELAEYMVKKIK----SMP  386 (480)
Q Consensus       319 ~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~-----g---~~~~~~~~~~~~~l~~~l~~~l~----~~~  386 (480)
                      ...+..                      ...+...++...+     +   .+.+.++.++..+.++++.+.|+    + .
T Consensus       283 ~~~~~~----------------------~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~-~  339 (405)
T 3k7y_A          283 RKFYSS----------------------PVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKK-Y  339 (405)
T ss_dssp             HTTTSS----------------------CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG-G
T ss_pred             hcccCC----------------------CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-c
Confidence            001100                      1122222222111     1   23345666778888999999998    7 4


Q ss_pred             C---CeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCH
Q psy12303        387 D---KFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTE  463 (480)
Q Consensus       387 ~---g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~  463 (480)
                      .   ++++ .+|+.++++|.-.+.                   +..++|.+.| +++.+    +  +  |+++..  .++
T Consensus       340 g~~~~~~~-~~p~gg~f~~~~l~~-------------------~~~~~L~~~g-V~v~p----~--~--Ris~a~--~~~  388 (405)
T 3k7y_A          340 NLNYDWNV-YKKQRGLFSFVPLLA-------------------KIAEHLKTHH-IYIIN----N--G--RINVSG--ITK  388 (405)
T ss_dssp             TCCCCGGG-GSSCCSSEEECGGGG-------------------GGTTTTTTTT-EECCT----T--S--EEEGGG--CCT
T ss_pred             CCCCCCcc-ccCCceEEEecCCCH-------------------HHHHHHHHCC-EeecC----C--C--eEEEec--cCH
Confidence            2   1454 367788777632211                   1123454555 44443    2  2  998543  468


Q ss_pred             HHHHHHHHHHHHhhccC
Q psy12303        464 GDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       464 ~di~~~~~~l~~~~~~l  480 (480)
                      ++|++++++|+++++.+
T Consensus       389 ~~i~~~~~~i~~~~~~~  405 (405)
T 3k7y_A          389 NNVDYIADKICLSLSQI  405 (405)
T ss_dssp             THHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhhC
Confidence            99999999999987653

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.77  E-value=3.2e-18  Score=175.06  Aligned_cols=349  Identities=10%  Similarity=0.055  Sum_probs=195.2

Q ss_pred             chhcChhhHHHHHH-HHHHHHHHhCC-----CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCC
Q psy12303        103 TYEIAPVFILMETV-VLEKMRQIIGW-----QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQ  176 (480)
Q Consensus       103 ~~~~~~~~~~~e~~-~~~~la~~~g~-----~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~  176 (480)
                      .|....+...+.++ +..++.+..+.     +++++++|+|+++++..++.++..+.+         ..||+ .|+++.+
T Consensus       133 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~~l---------~~~Gd-~Vlv~~P  202 (546)
T 2zy4_A          133 NYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGL---------LKAGD-KVAIGMP  202 (546)
T ss_dssp             SCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTS---------SCTTC-EEEEEES
T ss_pred             CCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhc---------CCCCC-EEEEeCC
Confidence            45444444455544 44555665432     246899999999999998877532110         01556 7888889


Q ss_pred             CchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHH-
Q psy12303        177 CHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADIC-  250 (480)
Q Consensus       177 ~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~-  250 (480)
                      +|+.+..++...+.+. +++.+|.++  ++.+|+++|++++++.      +++|++++++||||.+.+   +++|.++| 
T Consensus       203 ~y~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~  275 (546)
T 2zy4_A          203 VFTPYIEIPELAQYAL-EEVAINADPSLNWQYPDSELDKLKDPA------IKIFFCVNPSNPPSVKMDQRSLERVRNIVA  275 (546)
T ss_dssp             CCHHHHHHHHSTTSCC-EEEEEECBGGGTTBCCHHHHGGGGSTT------EEEEEEESSCSSSCBCCCHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHcCCCc-EEEEEecCcccCCCCCHHHHHHhhCCC------CeEEEEECCCCCCCccCCHHHHHHHHHHHH
Confidence            9999988877665443 778888865  3579999998876433      899999999999999976   56678888 


Q ss_pred             -HHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCc--------
Q psy12303        251 -QKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSA--------  320 (480)
Q Consensus       251 -~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~--------  320 (480)
                       +++|+++++|++|+.+......    ......+.++++.|++|+++.| ..+|+++..+..+........+        
T Consensus       276 ~~~~~~~ii~De~y~~~~~~~~s----~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~  351 (546)
T 2zy4_A          276 EHRPDLMILTDDVYGTFADDFQS----LFAICPENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALD  351 (546)
T ss_dssp             HTCTTCEEEEECTTGGGSTTCCC----HHHHCGGGEEEEEESTTTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHH
T ss_pred             hccCCcEEEEeCcchhhcccCcC----HHHhCCCCEEEEEeCccccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHH
Confidence             7899999999999976531111    1111113567788999999744 6789999876534333211110        


Q ss_pred             -ccccccccccCcc----c--CCCCccccCCCCCCchHHHH----HH-HHh--cHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy12303        321 -EYLFMQDKLYDVR----Y--DTGDKVIQCGRHNDIFKLWL----QW-RAK--GDEGFEKQIDRLMELAEYMVKKIKSMP  386 (480)
Q Consensus       321 -~~l~~~~~~~~~~----~--~~~~~~~~~~r~~~~l~~~~----~l-~~~--g~~~~~~~~~~~~~l~~~l~~~l~~~~  386 (480)
                       .|...........    +  +........+.........+    ++ ..+  +....++..+...+..+.+.+.|..  
T Consensus       352 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~~--  429 (546)
T 2zy4_A          352 HRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELGM--  429 (546)
T ss_dssp             HHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGTS--
T ss_pred             HHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence             0000000000000    0  00000000000011111111    11 111  2344556666666677777776643  


Q ss_pred             CCeEEecCCceeEEEEEeecCccCCCchhhHHHHhh---hhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCH
Q psy12303        387 DKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILG---EITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTE  463 (480)
Q Consensus       387 ~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~---~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~  463 (480)
                       ++.. .++..+.+++...+.-........+...+.   .-...+.+.+.+.|+.+.+...+....+++|+++.  ..++
T Consensus       430 -~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~--~~~~  505 (546)
T 2zy4_A          430 -PPLR-DENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLA--NLNE  505 (546)
T ss_dssp             -SCCC-CTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTCSSCEEEEESS--SSCH
T ss_pred             -Cccc-CCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCCCCCeEEEEec--cCCH
Confidence             2332 345666554432211000000000000010   00123566777888665543333222568999953  3479


Q ss_pred             HHHHHHHHHHHHhhc
Q psy12303        464 GDIDFLLTEMDRLGH  478 (480)
Q Consensus       464 ~di~~~~~~l~~~~~  478 (480)
                      +++++++++|+++++
T Consensus       506 e~i~~~~~~l~~~l~  520 (546)
T 2zy4_A          506 YEYAAIGRALRKMAD  520 (546)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.77  E-value=2.3e-18  Score=171.32  Aligned_cols=291  Identities=8%  Similarity=-0.053  Sum_probs=183.8

Q ss_pred             hHHHHHHHHHHHHHHhC--CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH
Q psy12303        110 FILMETVVLEKMRQIIG--WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV  187 (480)
Q Consensus       110 ~~~~e~~~~~~la~~~g--~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~  187 (480)
                      ..++++.+++++.+..+  +++.++++|+|+++++..++.+.....      .+....||+ .|+++.+.|+.+...++.
T Consensus       102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~------~~~~~~~Gd-~Vlv~~P~y~~~~~~~~~  174 (427)
T 2hox_A          102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNM------TATPDAPES-KVVAHAPFYPVFREQTKY  174 (427)
T ss_dssp             CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCT------TTCTTSCCE-EEEECSSCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhcc------ccccCCCCC-EEEEeCCCcccHHHHHHH
Confidence            57778887777776544  466789999999999999988771000      000001555 899999999999999999


Q ss_pred             cCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccc
Q psy12303        188 CGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGL  267 (480)
Q Consensus       188 ~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~  267 (480)
                      .|.   +++.      +.+|+++|++++++.      +++|++++++||||.+.+ +.    ++  +++.+.|+++....
T Consensus       175 ~g~---~~~~------~~~d~~~l~~~~~~~------~k~v~l~~p~NPtG~~~~-~~----l~--~~~~i~d~~~~~~~  232 (427)
T 2hox_A          175 FDK---KGYV------WAGNAANYVNVSNPE------QYIEMVTSPNNPEGLLRH-AV----IK--GCKSIYDMVYYWPH  232 (427)
T ss_dssp             SCB---TTEE------EEEEGGGGTTCSCGG------GEEEEEESSCTTTCCCCC-CS----ST--TCEEEEECTTCSTT
T ss_pred             cCC---eeee------ecCCHHHHHHhhcCC------ceEEEEcCCCCCcccccH-HH----Hc--CCCEEEeecccCCC
Confidence            987   4433      345778888877654      889999999999999988 42    33  56788888764211


Q ss_pred             cccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC
Q psy12303        268 LLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH  346 (480)
Q Consensus       268 ~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~  346 (480)
                      .  +..   .+.  .+.++++.|++|.++.| ..+|+++++++.+.............                     .
T Consensus       233 ~--s~~---~~~--~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~---------------------~  284 (427)
T 2hox_A          233 Y--TPI---KYK--ADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTE---------------------G  284 (427)
T ss_dssp             T--SCC---CSC--BCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTS---------------------S
T ss_pred             C--Ccc---ccC--CCceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhcCC---------------------C
Confidence            0  000   011  36789999999999744 56899998666655443321110000                     0


Q ss_pred             CCchHHHHHHHHh--cH-----------HHHHHHHHHHHHHHHHHHHHHhcCCCCeEE--ec-----------CCceeEE
Q psy12303        347 NDIFKLWLQWRAK--GD-----------EGFEKQIDRLMELAEYMVKKIKSMPDKFYL--IL-----------EPEMVNV  400 (480)
Q Consensus       347 ~~~l~~~~~l~~~--g~-----------~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~--~~-----------~~~~~~v  400 (480)
                      ...+...++...+  +.           +.+++..++..++.+++.+.|++ .+|+.+  +.           .|..+++
T Consensus       285 ~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~p~~g~f  363 (427)
T 2hox_A          285 TPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQ-SDRFSYQELPQSEYCNYFRRMRPPSPSY  363 (427)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTT-SSSEECCCCCSCEEETTTTEEECCCCSE
T ss_pred             CCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHh-CcCccccccccccccccccccCCCCceE
Confidence            1222222222222  11           23445667788889999999999 788876  21           2334555


Q ss_pred             EEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        401 SFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       401 ~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      +|.-.+..                ..++.+++. +.|+. +.++...+ ..+++|+++.   ++++++++++++|+++++
T Consensus       364 ~~~~~~~~----------------~~~~~~~ll~~~gI~-v~pg~~f~~~~~~~Ris~~---~~~e~l~~~l~~l~~~~~  423 (427)
T 2hox_A          364 AWVKCEWE----------------EDKDCYQTFQNGRIN-TQNGVGFEASSRYVRLSLI---KTQDDFDQLMYYLKDMVK  423 (427)
T ss_dssp             EEEEECSG----------------GGCSHHHHHHHTTEE-CEEGGGGTSCTTEEEEECS---SCHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCc----------------HHHHHHHHHHHCCEE-EcCCCccCCCCCEEEEEec---CCHHHHHHHHHHHHHHHh
Confidence            55333321                012344544 56644 44322222 1579999954   389999999999998765

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.67  E-value=4.1e-15  Score=146.44  Aligned_cols=338  Identities=10%  Similarity=0.032  Sum_probs=198.7

Q ss_pred             CccccccCCCChHHhHHHHHHHHcCcC-CcchhcChhhHHHHHHHHHHHHHHhCC--CC--CCeEECCChhHHHHHHHHH
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIATANTN-MFTYEIAPVFILMETVVLEKMRQIIGW--QG--GDSILAPGGSISNLYAFLA  148 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~e~~~~~~la~~~g~--~~--~~~~~t~ggt~a~~~al~~  148 (480)
                      -|.+--.-++.++++. ++.....+.+ ...|....+..++.+.+.+++   +|-  +.  ...+-|.|||.|+..++..
T Consensus        53 ~y~d~~g~~~vl~~Vk-~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~---~g~~~~~~~~~~~qt~ggtga~~~a~~~  128 (420)
T 4h51_A           53 AYRDEQGRPYPLRVVR-KAEQLLLDMNLDYEYLPISGYQPFIDEAVKII---YGNTVELENLVAVQTLSGTGAVSLGAKL  128 (420)
T ss_dssp             CCBCTTSCBCCCHHHH-HHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHH---HC---CGGGEEEEEEEHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCCHHHH-HHHHHHhcCCCCCCCCCcCChHHHHHHHHHHh---cCCCccccccceeeecCchHHHHHHHHH
Confidence            3444333344445443 3333333333 234766677777777765554   343  22  2345689999999888876


Q ss_pred             HHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCC--CCCCCCHHHHHHHHHHHHHCCCccE
Q psy12303        149 ARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD--KRGRLIPSELERLVLERKAKGDIPF  226 (480)
Q Consensus       149 ~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~  226 (480)
                      +....          ..||+ .|++++++++++...++..|..  .|...+..  +++.+|.+.+.+.++..   ..+++
T Consensus       129 l~~~~----------~~pgd-~V~ip~P~w~~y~~i~~~aG~~--~V~~~~~~~~~~~~~d~~~~~~~l~~~---~~~~~  192 (420)
T 4h51_A          129 LTRVF----------DAETT-PIYLSDPTWPNHYGVVKAAGWK--NICTYAYYDPKTVSLNFEGMKKDILAA---PDGSV  192 (420)
T ss_dssp             HTTTS----------CTTTS-CEEEEESCCTHHHHHHHHTTCC--CEEEEECEEGGGTEECHHHHHHHHHHS---CSSCE
T ss_pred             HHHhc----------CCCCC-EEEEecCCchhHHHHHHHcCCe--EEEeeccccccccCCCHHHHHHHHhcc---CCCcE
Confidence            65421          11556 7899999999999999999873  24444432  35678988888887653   33478


Q ss_pred             EEEeccCCCccccccC---hHHHHHHHHHcCcEEEeecccccccccccc-ccCc--ccCCCCCCccceeCccccCCCc-c
Q psy12303        227 FVNCTSGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKK-YRHP--RLTGIERADSVTWNPHKLMGTL-L  299 (480)
Q Consensus       227 ~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~-~~~~--~~~~~~~~D~~~~s~hK~~~~p-~  299 (480)
                      +++.+.++||||...+   +++|.++|++++++++.|++|.++...... ....  .......--+++.|++|.++.+ .
T Consensus       193 vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~  272 (420)
T 4h51_A          193 FILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSE  272 (420)
T ss_dssp             EEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGG
T ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccC
Confidence            8899999999999854   788999999999999999999887542111 0000  0000001124566899987754 6


Q ss_pred             cceEEEEeCchhhH--hhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--------cHHHHHHHHH
Q psy12303        300 QCSTIHFKQDGLLI--SCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--------GDEGFEKQID  369 (480)
Q Consensus       300 ~~g~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--------g~~~~~~~~~  369 (480)
                      .+|++.+.......  ....... .+....           ++  +   ............+        -.+.++.+.+
T Consensus       273 RvG~~~~~~~~~~~~~~~~~~l~-~~~r~~-----------~s--~---~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~  335 (420)
T 4h51_A          273 RAGTLSLLLKDKTKRADVKSVMD-SLIREE-----------YT--C---PPAHGARLAHLILSNNELRKEWEAELSAMAE  335 (420)
T ss_dssp             CEEEEEEECSCHHHHHHHHHHHH-HHHHTT-----------TS--S---CCHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEecccCHHHHHHHHHHHH-Hhhhcc-----------cC--c---chHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            78998876552211  1100000 000000           00  0   1111222222211        1345667778


Q ss_pred             HHHHHHHHHHHHHhcCC--CC-eEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC
Q psy12303        370 RLMELAEYMVKKIKSMP--DK-FYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN  446 (480)
Q Consensus       370 ~~~~l~~~l~~~l~~~~--~g-~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~  446 (480)
                      +..++++.|.+.|++ .  ++ +..+ .++.++|+|.    ++               +.+..++|.+.|+ ++.+    
T Consensus       336 r~~~~R~~l~~~L~~-~g~~~~~~~i-~~q~GmF~~~----gl---------------s~e~v~~L~e~~V-y~~~----  389 (420)
T 4h51_A          336 RIRTMRRTVYDELLR-LQTPGSWEHV-INQIGMFSFL----GL---------------SKAQCEYCQNHNI-FITV----  389 (420)
T ss_dssp             HHHHHHHHHHHHHHH-TTCSSCCTHH-HHCCSSEEEC----CC---------------CHHHHHHHHHTTE-ECCT----
T ss_pred             HHHHHHHHHHHHHHH-hCCCCCCCee-cCCCceEEec----Cc---------------CHHHHHHHHhCCE-EEcC----
Confidence            888899999999988 3  11 2222 3455666652    11               1233456666764 3322    


Q ss_pred             CcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        447 DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       447 ~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      +  +  |+++..  .+++.|++++++|.++++++
T Consensus       390 ~--g--Ris~Ag--l~~~ni~~~a~aI~~vvr~i  417 (420)
T 4h51_A          390 S--G--RANMAG--LTHETALMLAQTINDAVRNV  417 (420)
T ss_dssp             T--C--EEEGGG--CCHHHHHHHHHHHHHHHC--
T ss_pred             C--C--EEEecc--CCHHHHHHHHHHHHHHHHHh
Confidence            2  2  998654  58999999999999988763

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.47  E-value=8.6e-18  Score=167.40  Aligned_cols=311  Identities=11%  Similarity=0.031  Sum_probs=177.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH---HH
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA---AV  187 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~---~~  187 (480)
                      ...+.++.+.++++++ ....++|++|||+||+.|++++|..       .|     ++.+|......|.+...++   ..
T Consensus       139 ~~~~~~Lae~L~~~~p-~~~~v~~~nSGseA~~~Aik~ar~~-------tg-----r~~ii~~~~~yHG~~~~~~sg~~~  205 (465)
T 2yky_A          139 TENEALFAEAVCDRFP-SIDLVRFTNSGTEANLMALATATAI-------TG-----RKTVLAFDGGYHGGLLNFASGHAP  205 (465)
Confidence            4556677788888884 2346999999999999999998742       11     1324444555566554443   11


Q ss_pred             cCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEEEeeccc
Q psy12303        188 CGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       188 ~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l~vD~a~  263 (480)
                      .|+.. .++.+|.+     |+++|++++++.   +.++++|+++..++++|.+.|    +++|.++|++||+++++|++|
T Consensus       206 ~g~~~-~~~~~~~~-----d~~~l~~~l~~~---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~  276 (465)
T 2yky_A          206 TNAPY-HVVLGVYN-----DVEGTADLLKRH---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVM  276 (465)
Confidence            12211 23334432     788999999742   123888888877777998766    999999999999999999999


Q ss_pred             cccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccC
Q psy12303        264 GGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQC  343 (480)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  343 (480)
                      + + ........ ...++ .+|+++  +.|+++++.++|+++.+. ++++.........+..          .+++   +
T Consensus       277 ~-~-r~g~~~a~-~~~gv-~pDi~t--~sK~lg~G~piG~v~~~~-~i~~~l~~~~~g~~~~----------~~T~---~  336 (465)
T 2yky_A          277 T-S-RLSGGGAQ-EMLGI-SADLTT--LGKYIGGGMSFGAFGGRR-DLMERFDPARDGAFAH----------AGTF---N  336 (465)
Confidence            9 5 22222111 22233 467765  679999878889887654 3443322100000000          0000   1


Q ss_pred             CCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEe--cCCceeEEEEEeecCccCCCchhhHHHH
Q psy12303        344 GRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD-KFYLI--LEPEMVNVSFWYLPTRVRNMPHEKRLNI  420 (480)
Q Consensus       344 ~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~-g~~~~--~~~~~~~v~f~~~~~~~~~~~~~~~~~~  420 (480)
                      +.+....++.++|+.+..   +.+.++..++.+++++.|++ .. ...+.  .+..+.++.+.+......+.......+ 
T Consensus       337 ~npla~aAa~aaL~~l~~---~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d-  411 (465)
T 2yky_A          337 NNILTMSAGHAALTQIYT---RQAASDLSASGDRFRANLNR-IAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAAD-  411 (465)
Confidence            112233333444554433   24567777888888888876 31 22221  123344444443321111000000000 


Q ss_pred             hhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        421 LGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       421 l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                       ......+.+.|.++|+++... .. +   .     ++..+|++||++++++|++++++
T Consensus       412 -~~~~~~~~~~ll~~GV~v~p~-~~-~---~-----~s~~~t~edid~~l~~l~~~l~~  459 (465)
T 2yky_A          412 -QQLKELFFFHMLRKGIYLAPR-GM-Y---A-----LSLEIADAGRDAFAEALADFIGE  459 (465)
Confidence             011246778888888554332 21 1   1     33568999999999999987764

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.59  E-value=2.8e-14  Score=151.76  Aligned_cols=324  Identities=11%  Similarity=0.002  Sum_probs=181.6

Q ss_pred             HHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCc-----cCCce-EEEecCCCchhHHHHHH
Q psy12303        114 ETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSA-----IKGQL-VMFTSDQCHYSVRSCAA  186 (480)
Q Consensus       114 e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~-----~~g~~-~vl~~~~~h~s~~~~~~  186 (480)
                      ..++.+.|+++++-+ -..++|++|||+||..||++++.++   ....|...     .|++. .|......|.....++.
T Consensus       426 ~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~---~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals  502 (831)
T 4a0g_A          426 ALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKF---CVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAME  502 (831)
T ss_dssp             HHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHH---HHTTTC---------CCEEEEEETTCCCCSSHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHH---HhhcCCCccccccccCccEEEEecCCcccCceeeee
Confidence            345677788887643 3469999999999999999994211   11223210     01233 45556667888888887


Q ss_pred             HcCCCC-----------C--------------CeEEeeCCCCCC---------CC------------------HHHHHHH
Q psy12303        187 VCGLGT-----------D--------------NCVEVPSDKRGR---------LI------------------PSELERL  214 (480)
Q Consensus       187 ~~g~~~-----------~--------------~v~~v~~~~~~~---------~d------------------~~~L~~~  214 (480)
                      ..|...           .              .+..++....++         -+                  .++|++.
T Consensus       503 ~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~  582 (831)
T 4a0g_A          503 AQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKH  582 (831)
T ss_dssp             TSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHH
T ss_pred             ccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHH
Confidence            766310           0              011222221100         01                  2566666


Q ss_pred             HHHHH--HCCCccEEEEeccC-CCccccccC----hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccc
Q psy12303        215 VLERK--AKGDIPFFVNCTSG-TTVLGAFDP----IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSV  287 (480)
Q Consensus       215 i~~~~--~~~~~~~~v~~~~~-~~~~G~~~~----l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~  287 (480)
                      |++..  ..+..+++|++... +...|.+.+    +++|.++|++||+++|+|+++.++......+.. ...|+ ..|++
T Consensus       583 l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~-e~~gv-~PDii  660 (831)
T 4a0g_A          583 LQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTT-ELLGC-KPDIA  660 (831)
T ss_dssp             C---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTH-HHHSS-CCSEE
T ss_pred             HHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhh-HhcCC-CCcEE
Confidence            65421  22345889999886 788888765    899999999999999999999987554443333 33455 67988


Q ss_pred             eeCccccCCCc-ccceEEEEeCchhhHhhhcCCcc-cccccccccCcccCCCCccccCCCCCCchHHHHHHHH---hcHH
Q psy12303        288 TWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAE-YLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA---KGDE  362 (480)
Q Consensus       288 ~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~---~g~~  362 (480)
                      +  +.|.++++ .+.|+++++++ +.+........ .+.+                ..+.....+++.+++..   +..+
T Consensus       661 t--lsK~L~gG~~Plgav~~~~~-i~~~~~~~~~~~~~~h----------------g~T~~g~Pla~Aaala~L~~i~~~  721 (831)
T 4a0g_A          661 C--FAKLLTGGMVPLAVTLATDA-VFDSFSGDSKLKALLH----------------GHSYSAHAMGCATAAKAIQWFKDP  721 (831)
T ss_dssp             E--ECGGGGTTSSCCEEEEECHH-HHHTTCSSCGGGSCCC----------------CCTTTTCHHHHHHHHHHHHHHHCT
T ss_pred             E--EecccccCccCcEEEEECHH-HHHHHhccccccccee----------------ecCCcccHHHHHHHHHHHHHHHhh
Confidence            7  56999876 47898887543 33322111000 0000                01111234444444433   2111


Q ss_pred             HHHHHHHHHHHH--------HHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh
Q psy12303        363 GFEKQIDRLMEL--------AEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ  434 (480)
Q Consensus       363 ~~~~~~~~~~~l--------~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~  434 (480)
                      .+   .++..++        .+.+.+.+.+ .|.+.-+. ..+.++.+.+.......    ...   .....++.+.+.+
T Consensus       722 ~l---~~~~~~~~~~l~~~l~~~l~~~l~~-~~~v~~vr-g~Gl~~~iel~~~~~~~----~~~---~~~a~~~~~~l~e  789 (831)
T 4a0g_A          722 ET---NHNITSQGKTLRELWDEELVQQISS-HSAVQRVV-VIGTLFALELKADASNS----GYA---SLYAKSLLIMLRE  789 (831)
T ss_dssp             TT---CTTBCTTSSBBCCCSCHHHHHHHHH-STTEEEEE-EETTEEEEEEC----------------CHHHHHHHHHHHH
T ss_pred             HH---HHHHHHHHHHHHHHHHHHHHHHHhh-CCCceeEe-ecccEEEEEEecCcccc----ccc---hHHHHHHHHHHHH
Confidence            11   1222111        2235556667 67665432 33344444443211000    000   0113467788889


Q ss_pred             cccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        435 AGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       435 ~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      +|.++...      .+.+|++ +++.+|++||++++++|+++++++
T Consensus       790 ~Gv~v~p~------g~~lrl~-pp~~~t~e~id~~~~~l~~~l~~l  828 (831)
T 4a0g_A          790 DGIFTRPL------GNVIYLM-CGPCTSPEICRRLLTKLYKRLGEF  828 (831)
T ss_dssp             TTEECCCB------TTEEEEE-CCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred             CCcEEEec------CCEEEEE-CCCCCCHHHHHHHHHHHHHHHHHh
Confidence            98544321      4699999 888999999999999999987753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	480
d1js3a_	476	c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa)	1e-100
d1pmma_	450	c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {	5e-43
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	2e-35
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	3e-32
d1c4ka2	462	c.67.1.5 (A:108-569) Ornithine decarboxylase major	1e-18
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	3e-10
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	6e-10
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	7e-09

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  306 bits (785), Expect = e-100
 Identities = 110/488 (22%), Positives = 195/488 (39%), Gaps = 36/488 (7%)

Query: 7   FLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKY 66
             K++V+ + +Y++    R  +V     P  ++ ++    P++    + ++ D    +  
Sbjct: 9   RGKEMVDYMADYLEGIEGR--QVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMP 66

Query: 67  QV-RTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQII 125
            V     P F           +M  + L        F++  +P    +ETV+++ + +++
Sbjct: 67  GVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKML 126

Query: 126 GWQGG---------DSILAPGGSISNLYAFLAARHKMFPTYKEKGLS----AIKGQLVMF 172
                           ++    S + L A LAAR K+    +         A+  +LV +
Sbjct: 127 QLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAY 186

Query: 173 TSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTS 232
            SDQ H SV     + G+       +PSD +  +  S L+  +   KA G IPFFV  T 
Sbjct: 187 ASDQAHSSVERAGLIGGV---KLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATL 243

Query: 233 GTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPH 292
           GTT   +FD + E+  IC + ++WLHVDAA+ G   +  ++RH  L G+E ADS  +NPH
Sbjct: 244 GTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRH-LLNGVEFADSFNFNPH 302

Query: 293 KLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL 352
           K +     CS +  K+   L    ++   YL    +   +  D     +  GR     K+
Sbjct: 303 KWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKM 362

Query: 353 WLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNM 412
           W  +R  G +G +  I + ++L+      +   P  F +  E  +  V F    +     
Sbjct: 363 WFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPR-FEVCAEVTLGLVCFRLKGS----- 416

Query: 413 PHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTE 472
                      +   L  R+  A  + +    L       R  I S  V  G +      
Sbjct: 417 ---------DGLNEALLERINSARKIHLVPCRLRGQF-VLRFAICSRKVESGHVRLAWEH 466

Query: 473 MDRLGHDL 480
           +  L  +L
Sbjct: 467 IRGLAAEL 474

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

 Score =  155 bits (393), Expect = 5e-43
 Identities = 49/396 (12%), Positives = 104/396 (26%), Gaps = 37/396 (9%)

Query: 89  AGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDS-----ILAPGGSISNL 143
             + +  + N N    E  P    ++   +  +  +       +         G S + +
Sbjct: 70  VHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACM 129

Query: 144 YAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKR 203
              +A + +     +  G                       A    +            +
Sbjct: 130 LGGMAMKWRWRKRMEAAGKP---TDKPNLVCGPVQICWHKFARYWDVELREIP--MRPGQ 184

Query: 204 GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW 263
             + P  +     E        F V  T             +        ++ +H+DAA 
Sbjct: 185 LFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAAS 244

Query: 264 GGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYL 323
           GG L             + R  S++ + HK     L C  + ++ +  L      + +YL
Sbjct: 245 GGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYL 304

Query: 324 FMQDKLYDVRYDTGDKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKI 382
                        G   I   R    +   + ++   G EG+ K  +   ++A Y+  +I
Sbjct: 305 ---------GGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEI 355

Query: 383 KSMPDKFYLIL---EPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMM 439
             +    ++     +  +  V F                         L  R+   G  +
Sbjct: 356 AKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYD-----------LSERLRLRGWQV 404

Query: 440 VGYQ--PLNDLPNFFRNIISSAAVTEGDIDFLLTEM 473
             +            R I+          + LL + 
Sbjct: 405 PAFTLGGEATDIVVMR-IMCRRGFEMDFAELLLEDY 439

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score =  134 bits (338), Expect = 2e-35
 Identities = 45/372 (12%), Positives = 104/372 (27%), Gaps = 51/372 (13%)

Query: 109 VFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQ 168
           +   +   +LE   + +G             +S      AAR K                
Sbjct: 110 IMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNV----------- 158

Query: 169 LVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFV 228
             +      H S     +  G+       V    R  +   ++E  + +    G+ P  V
Sbjct: 159 --VIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPC-V 215

Query: 229 NCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVT 288
             T         D I EIA IC+ Y++   ++ A+        +          R D+V 
Sbjct: 216 LSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKK--AFKYRVDAVV 273

Query: 289 WNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHND 348
            +  K + T +    ++      +   +                                
Sbjct: 274 SSSDKNLLTPIGGGLVYSTDAEFIKEISLSYP---------------------GRASATP 312

Query: 349 IFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL----EPEMVNVSFWY 404
           +    +   + G + + + +       + + + +  +  K          P    +S   
Sbjct: 313 VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNS 372

Query: 405 LPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEG 464
            P  +       +L  L    P    +    G   +G    +     +  + ++  V   
Sbjct: 373 DPVEIA-----AKLYNLRVTGPRGIKKTDHFGNCYLGTYTHD-----YIVMNAAIGVRTE 422

Query: 465 DIDFLLTEMDRL 476
           DI   +++++++
Sbjct: 423 DIVNSVSKLEKI 434

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  126 bits (316), Expect = 3e-32
 Identities = 44/381 (11%), Positives = 107/381 (28%), Gaps = 47/381 (12%)

Query: 107 APVFILMETVVLEKMRQIIG-WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAI 165
           + +   +   ++  + ++ G        + P  +  +L           P  K       
Sbjct: 89  SSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKY------ 142

Query: 166 KGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIP 225
                +        S        G        V      R     +E     ++   +  
Sbjct: 143 -----IIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAK--IQELGPEHI 195

Query: 226 FFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERAD 285
             ++ T+        D +EE+A IC  Y++   V+ A+G            +   + R D
Sbjct: 196 LCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQ-QGARVGRID 254

Query: 286 SVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGR 345
           +   +  K     +  + I    +  +   ++M                           
Sbjct: 255 AFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMY---------------------PGRAS 293

Query: 346 HNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKF--YLILEPEMVNVSFW 403
            +    + +   + G  G+ K +    E+  Y+  ++K + +     L+  P        
Sbjct: 294 ASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAM 353

Query: 404 YLPTRVRNMPHE--------KRLNILG-EITPILKGRMMQAGTMMVGYQPLNDLPNFFRN 454
            L T   +                + G    P+   + +   T        ++ P  + N
Sbjct: 354 TLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLN 413

Query: 455 IISSAAVTEGDIDFLLTEMDR 475
             ++  +   D+D  +  +D+
Sbjct: 414 AAAAIGMKMQDVDLFIKRLDK 434

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

 Score = 85.8 bits (211), Expect = 1e-18
 Identities = 51/353 (14%), Positives = 96/353 (27%), Gaps = 43/353 (12%)

Query: 170 VMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLE-----------R 218
           ++      H SV + A     G    ++   +  G +          +            
Sbjct: 108 LVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPE 167

Query: 219 KAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRL 278
           +AK   PF +      T  G      E+         ++  D+AW G        R+   
Sbjct: 168 RAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSP 227

Query: 279 TGIER------ADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQM------SAEYLFMQ 326
             I+          V  + HK      Q S IH K   +             ++  LFM 
Sbjct: 228 LLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMS 287

Query: 327 DKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP 386
              +   Y   D            KLW        E   K++ +   +    V  + +  
Sbjct: 288 TSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIE-ARKKLIKAGSMFRPFVPPVVNGK 346

Query: 387 DKFYLILEPEMVNVSFWYLPTRVRN-----MPHEKRLNILGEITPILKGRMMQAGTMMVG 441
                  E    N+ +W      +          +      +      G   + G     
Sbjct: 347 KWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDF 406

Query: 442 YQPLNDLPNFFRN--------------IISSAAVTEGDIDFLLTEMDRLGHDL 480
             P   + N+ R+               + + A T   ++ L+T++ +L   +
Sbjct: 407 GVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRLI 459

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score = 59.4 bits (143), Expect = 3e-10
 Identities = 45/350 (12%), Positives = 94/350 (26%), Gaps = 34/350 (9%)

Query: 133 ILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGT 192
           +    G  +       A                    + FT+ + H        V  +  
Sbjct: 94  VPTHQGRGAENLLSQLAIKP----------GQYVAGNMYFTTTRFHQEKNGATFVDIVRD 143

Query: 193 DNCVEVPSDKRGRLI-PSELERLVLERKAK--GDIPFFVNCTSGTTVLGAFDPIEEIADI 249
           +      +      I  ++L  L+ E+ A+    I   V          +   +  + ++
Sbjct: 144 EAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEM 203

Query: 250 CQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQD 309
              Y + +  DA          K +          +    +    M +     T+  K+D
Sbjct: 204 ASTYGIKIFYDATRCVENAYFIKEQEA-----GYENVSIKDIVHEMFSYADGCTMSGKKD 258

Query: 310 GLLI--SCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQ 367
            L+       M+ E +F   K   V Y+           +          A   E  E +
Sbjct: 259 CLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHR 318

Query: 368 IDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHE--KRLNILGEIT 425
           + ++  L + + +           I+EP   +  F        ++  +     ++   I 
Sbjct: 319 VKQVRYLGDKLREAG-------VPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIY 371

Query: 426 PILKGRMMQAGTMMVGYQPLNDL-----PNFFRNIISSAAVTEGDIDFLL 470
                R M+ G +  G                R  I     T   +D + 
Sbjct: 372 METGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVA 421

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score = 58.8 bits (141), Expect = 6e-10
 Identities = 49/375 (13%), Positives = 114/375 (30%), Gaps = 37/375 (9%)

Query: 119 EKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
           +K +++  +     I A  G  +    F                   K +  +F S+   
Sbjct: 82  DKAKELFNYDYI--IPAHQGRGAENILFPVLLKY--------KQKEGKAKNPVFISNFHF 131

Query: 179 YSVRSCAAVCGLGTDNCV-------EVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCT 231
            +  +   + G    N V       E   D +G     +L+  + +  A   +      T
Sbjct: 132 DTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVT 191

Query: 232 SGTTVLGAFDP--IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVT- 288
             +          ++E+ +I +++ +++ +D+A         K R P+       + +  
Sbjct: 192 CNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFD 251

Query: 289 WNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHND 348
              +    T+           GL+   +    E +F   +   V  +           + 
Sbjct: 252 MYKYADALTMSAKKDPLLNIGGLVAIRD---NEEIFTLARQRCVPMEGFVTYGGLAGRDM 308

Query: 349 IFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTR 408
              +        +E    +I ++  L + +        +    I  P   +  F      
Sbjct: 309 AAMVQGLEEGTEEEYLHYRIGQVKYLGDRLR-------EAGIPIQYPTGGHAVFVDCKKL 361

Query: 409 VRNMPHEKRLNILGEITPILKG--RMMQAGTMMVGYQPLNDL-----PNFFRNIISSAAV 461
           V  +P ++           L+   R ++ G+ ++G  P           F R  I+    
Sbjct: 362 VPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVY 421

Query: 462 TEGDIDFLLTEMDRL 476
           T   +D++   +  L
Sbjct: 422 TNDHMDYIADALIGL 436

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 55.7 bits (133), Expect = 7e-09
 Identities = 51/382 (13%), Positives = 109/382 (28%), Gaps = 48/382 (12%)

Query: 119 EKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
           E ++ I G+Q   +I    G  +          K     +EKGL   K    +  S+   
Sbjct: 81  ESVKNIFGYQ--YTIPTHQGRGAEQIYIPVLIKKR---EQEKGLDRSKM---VAFSNYFF 132

Query: 179 YSVRSCAAVCG-----LGTDNCVEVPSD--KRGRLIPSELERLVLERKAKGDIPFFVNCT 231
            + +  + + G     +      +       +G      LER + E             T
Sbjct: 133 DTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATIT 192

Query: 232 --SGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTG--------- 280
             S      +   ++ +  I +KY++ + +D+A         K R               
Sbjct: 193 SNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRE 252

Query: 281 -IERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDK 339
             + AD +  +  K     +          G L+     S   ++ + +   V  +    
Sbjct: 253 TYKYADMLAMSAKKDAMVPM----------GGLLCMKDDSFFDVYTECRTLCVVQEGFPT 302

Query: 340 VIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVN 399
                           +     +    +I ++  L + + +                 V+
Sbjct: 303 YGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAA---FVD 359

Query: 400 VSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDL-----PNFFRN 454
                        P +     L ++  I   R ++ G+ ++G  P             R 
Sbjct: 360 AGKLLPHIPADQFPAQALACELYKVAGI---RAVEIGSFLLGRDPKTGKQLPCPAELLRL 416

Query: 455 IISSAAVTEGDIDFLLTEMDRL 476
            I  A  T+  +DF++     +
Sbjct: 417 TIPRATYTQTHMDFIIEAFKHV 438

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	480
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	100.0
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	100.0
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	100.0
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	100.0
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	100.0
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	100.0
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	100.0
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	100.0
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.97
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.96
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.96
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.96
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.95
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.94
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.93
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.92
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.92
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.92
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.92
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.92
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.92
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.92
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.91
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.91
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.91
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.91
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.9
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.9
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.9
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.9
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.89
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.89
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.89
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.89
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.88
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.88
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.88
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	99.88
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.88
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.87
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.86
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.86
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.86
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.85
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.84
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.84
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.84
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.83
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.83
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.82
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.81
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.81
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.81
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.8
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.8
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.79
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.78
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.77
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.76
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.76
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.76
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.76
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.75
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.74
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.73
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.73
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.72
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.71
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.71
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.71
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.7
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.7
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.68
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.67
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.67
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.65
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.65
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.65
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.65
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.63
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.63
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.62
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.62
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.61
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.58
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.57

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.3e-75  Score=584.03  Aligned_cols=455  Identities=24%  Similarity=0.375  Sum_probs=402.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCcccCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHhhcc-CCccCCCCCccccccCC
Q psy12303          4 TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLK-YQVRTGHPMFMNQLSCG   82 (480)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~-~~~~~~~p~~~~~~~~~   82 (480)
                      -|+.+++|+|+++||++++.++  ||.+..+|+++++.++..+|++|.+.+++++++++.+. ...+|+||+|++|++++
T Consensus         6 fr~~~~~~~d~i~d~~~~~~~~--~v~~~~~p~~l~~~~~~~~P~~g~~~~~~l~~~~~~i~~~~~~~~~P~f~~~~~~~   83 (476)
T d1js3a_           6 FRRRGKEMVDYMADYLEGIEGR--QVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPTA   83 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHTGGGS--CSSCCCCTTCSGGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHhhccC--CCCCCCChHHHHHhcCcccCcCCCCHHHHHHHHHHHHhCCCCCCCCCCeeEeCCCC
Confidence            4688999999999999998864  88899999999999999999999999999999987654 55679999999999999


Q ss_pred             CChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCC---------CCeEECCChhHHHHHHHHHHHHhc
Q psy12303         83 LDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQG---------GDSILAPGGSISNLYAFLAARHKM  153 (480)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~---------~~~~~t~ggt~a~~~al~~~~~~~  153 (480)
                      ..+++++++++.+.+|+|...|+.+|..+++|.++.+|+++++|+|+         .++++|+|||+||++++++||++.
T Consensus        84 ~~~~~~l~~~~~~~~n~n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~  163 (476)
T d1js3a_          84 SSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKV  163 (476)
T ss_dssp             CCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhcccccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999974         468999999999999999999987


Q ss_pred             CchhHhcCC--Cc--cCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEE
Q psy12303        154 FPTYKEKGL--SA--IKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVN  229 (480)
Q Consensus       154 ~~~~~~~g~--~~--~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~  229 (480)
                      +++.+..+.  ..  ...+.+|++|+.+|+|+.|++.++|+   .++.||+|++++||+++|+++|+++.++|..|++|+
T Consensus       164 ~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl---~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~Vv  240 (476)
T d1js3a_         164 VRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGV---KLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVV  240 (476)
T ss_dssp             HHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTC---EEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHhhcccccCcccccccCceEEEecccccHHHHHHHHhcCc---eEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEe
Confidence            665443322  10  01156899999999999999999999   578999999999999999999999999999999999


Q ss_pred             eccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCc
Q psy12303        230 CTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQD  309 (480)
Q Consensus       230 ~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~  309 (480)
                      +++|||.+|.+||+++|+++|++||+|+|||||||++..+++.++. .+.|++.+||+++|+|||+++|++||++++|++
T Consensus       241 ataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~-~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~  319 (476)
T d1js3a_         241 ATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRH-LLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRR  319 (476)
T ss_dssp             EEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGG-GGTTGGGCSEEEECHHHHSSCCSSCEEEEESCH
T ss_pred             ecCCCccceeeccHHHHHHHHHhcCcEEEEecccchhhhhhcchhh-hhcCCcccceeeecCccccccCCcceeecccch
Confidence            9999999999999999999999999999999999999999999888 999999999999999999999999999999998


Q ss_pred             hhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCe
Q psy12303        310 GLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKF  389 (480)
Q Consensus       310 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~  389 (480)
                      ..+.......+.|+..........+++++++++++|+++++++|++++.+|.+|+++++++..+++++|.+.|++ .|++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~-~~~f  398 (476)
T d1js3a_         320 TDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQ-DPRF  398 (476)
T ss_dssp             HHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTTE
T ss_pred             HHHHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCCe
Confidence            877776666677776554444445678889999999999999999999999999999999999999999999999 8999


Q ss_pred             EEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHH
Q psy12303        390 YLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFL  469 (480)
Q Consensus       390 ~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~  469 (480)
                      +++.+|.++++||++.+..              .+++++.+++.++|.++++++...+ ..++|++++++.+|++||+.+
T Consensus       399 el~~~p~l~iV~Fr~~~~d--------------~~n~~l~~~l~~~G~~~~s~t~~~g-~~~lR~~i~n~~Tt~~did~~  463 (476)
T d1js3a_         399 EVCAEVTLGLVCFRLKGSD--------------GLNEALLERINSARKIHLVPCRLRG-QFVLRFAICSRKVESGHVRLA  463 (476)
T ss_dssp             EECSCCCSSEEEEEESSCH--------------HHHHHHHHHHHHHTSCBCEEEEETT-EEEEEEECCCTTCCHHHHHHH
T ss_pred             EEECCCceEEEEEEccCCh--------------HHHHHHHHHHHhcCCEEEeeeeECC-EEEEEEEeCCCCCCHHHHHHH
Confidence            9999999999999986432              1246788899999999888888888 689999988999999999999


Q ss_pred             HHHHHHhhccC
Q psy12303        470 LTEMDRLGHDL  480 (480)
Q Consensus       470 ~~~l~~~~~~l  480 (480)
                      ++.|++++++|
T Consensus       464 ~~~i~~~a~~l  474 (476)
T d1js3a_         464 WEHIRGLAAEL  474 (476)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988763

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-51  Score=406.03  Aligned_cols=397  Identities=15%  Similarity=0.099  Sum_probs=318.4

Q ss_pred             CCCCCCCCCHHHHHHHHHhhc--cCCccCCCCCccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHH
Q psy12303         44 LDIPEKGLPLQKLIDDCFTTL--KYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKM  121 (480)
Q Consensus        44 ~~~p~~~~~~~~i~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~l  121 (480)
                      .++|+++.+.+++.+.+.+.+  .++.+.   ++..++.+...+  .+.+++...+|.|...++.+|..+++|.++.+|+
T Consensus        28 ~~~p~~~~~~~~~~~~i~d~l~~dg~~~~---n~asf~~t~~~~--~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~l  102 (450)
T d1pmma_          28 KRFPLHEMRDDVAFQIINDELYLDGNARQ---NLATFCQTWDDE--NVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMV  102 (450)
T ss_dssp             SSCCCSCCCHHHHHHHHHHHGGGSCCGGG---BCSCCSCCCCCH--HHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHH
T ss_pred             ccCCccCCCHHHHHHHHHHHhccCCCccc---cccccccCCCCH--HHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHH
Confidence            568999999999999986643  222111   233444444433  4569999999999999999999999999999999


Q ss_pred             HHHhCCCC-----CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeE
Q psy12303        122 RQIIGWQG-----GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCV  196 (480)
Q Consensus       122 a~~~g~~~-----~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~  196 (480)
                      ++++|+|.     ..|++|+|||+||++|+.++|+++.+..+..|...   +..++++..+|+|+.++++++|+   +++
T Consensus       103 a~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~---~~~~~~~~~~H~s~~Kaa~~~gi---~~~  176 (450)
T d1pmma_         103 ADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPT---DKPNLVCGPVQICWHKFARYWDV---ELR  176 (450)
T ss_dssp             HHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCC---SCCEEEESSCCHHHHHHHHHTTC---EEE
T ss_pred             HHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCC---CCceEEecccHHHHHHHHHHcCC---Cce
Confidence            99999864     34899999999999999999998766655555532   33677788899999999999999   788


Q ss_pred             EeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHH------HHcCcEEEeeccccccccc
Q psy12303        197 EVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADIC------QKYNMWLHVDAAWGGGLLL  269 (480)
Q Consensus       197 ~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~------~~~~~~l~vD~a~~~~~~~  269 (480)
                      .||+++ +++||+++|+++++++      |++|++++|+|.+|.+||+++|.++|      +++|+|+|||||++++..+
T Consensus       177 ~v~~~~~~~~~d~~~L~~~i~~~------t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p  250 (450)
T d1pmma_         177 EIPMRPGQLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAP  250 (450)
T ss_dssp             ECCCBTTBCSCCHHHHHHHCCTT------EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHH
T ss_pred             EeeecCCCCcCcHHHHHHHhhhC------ceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceee
Confidence            999886 5999999999999887      99999999999999999999888885      5579999999999998775


Q ss_pred             cccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC-C
Q psy12303        270 SKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN-D  348 (480)
Q Consensus       270 ~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~-~  348 (480)
                      +.....+...+++++||+++|+|||+++|+|||++++|++..+.......+.|+..         ++++++++++|++ .
T Consensus       251 ~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~---------~~~~~~~~~sr~~~~  321 (450)
T d1pmma_         251 FVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGG---------QIGTFAINFSRPAGQ  321 (450)
T ss_dssp             HHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEEETTE---------EEEECCSCCSCBSHH
T ss_pred             eechhhhhhhcccceeEeecChhhccCCCCCeeEEEecChhhhhhhcccccCcCCC---------CcCCCcccCccchHH
Confidence            44322225778889999999999999999999999999987766555455566533         2345678889986 5


Q ss_pred             chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC----CceeEEEEEeecCccCCCchhhHHHHhhhh
Q psy12303        349 IFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE----PEMVNVSFWYLPTRVRNMPHEKRLNILGEI  424 (480)
Q Consensus       349 ~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~----~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~  424 (480)
                      ++++|+.++.+|.+|+++.+++..+++++|.+.|++ .++++++.+    +...+|||++.+....+.+           
T Consensus       322 ~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~-~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~~~-----------  389 (450)
T d1pmma_         322 VIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK-LGPYEFICTGRPDEGIPAVCFKLKDGEDPGYT-----------  389 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCEEEEEECCTTTBSSEEEEEECTTCCCSSC-----------
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEeCCCCCCceEEEEEecCCcccCCCC-----------
Confidence            678999999999999999999999999999999999 899999853    4567899998765422211           


Q ss_pred             hHHHHHHHHhcccEEEeeeeeC--CcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        425 TPILKGRMMQAGTMMVGYQPLN--DLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       425 ~~~i~~~l~~~g~~~~~~~~~~--~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ..++..+|.++|..+..+....  ....++|++ +...+|++++|.+++.|++.+++
T Consensus       390 ~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvv-v~~~~t~e~~d~lv~dl~~~v~~  445 (450)
T d1pmma_         390 LYDLSERLRLRGWQVPAFTLGGEATDIVVMRIM-CRRGFEMDFAELLLEDYKASLKY  445 (450)
T ss_dssp             HHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEE-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeeeccCcCCCcCCcEEEEEE-ccCCCCHHHHHHHHHHHHHHHHH
Confidence            1356788889997644432211  114689999 77889999999999999998765

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.7e-37  Score=304.61  Aligned_cols=386  Identities=13%  Similarity=0.104  Sum_probs=259.4

Q ss_pred             CCCCCCCCCHHHHHHHHHhhccCCccCCCCCccccccCCCChHHhHHHHHHHHcCcCCcch-------------hcChhh
Q psy12303         44 LDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTY-------------EIAPVF  110 (480)
Q Consensus        44 ~~~p~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------~~~~~~  110 (480)
                      .++|++|.+.++|++.++++...+    +++|.++...+..+..+..+++........+++             ..++..
T Consensus        17 ~~lP~~G~~~~~i~~~l~~~~~~d----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (445)
T d3bc8a1          17 GKCPEDGWDESTLELFLHELAVMD----SNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLL   92 (445)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHTB----GGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCBCC-------CCSBHHHHHH
T ss_pred             CCCCcCCCCHHHHHHHHHHHHhcc----CCcccCcccccccCccccHHHHHHHHHhhccccccCcchhhhhhhhccchHH
Confidence            578999999999999998765422    233444433332222222233333222221111             112345


Q ss_pred             HHHHHHHHHHHHHHhCCCC-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcC
Q psy12303        111 ILMETVVLEKMRQIIGWQG-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG  189 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g  189 (480)
                      ..+|.++.+|+++++|.+. ..+++|+|||+++.+++.+++..+       +    ++..+|++|..+|+|+.+++..+|
T Consensus        93 ~~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~-------~----~~~~~vi~~~~~H~s~~~a~~~~g  161 (445)
T d3bc8a1          93 NKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK-------R----PKAKYIIWPRIDQKSCFKSMVTAG  161 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHH-------C----TTCCEEEEECCCCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHh-------C----CCCCEEEEcCcccHHHHHHHHHcC
Confidence            7899999999999999965 678899999976666655554321       1    223489999999999999999999


Q ss_pred             CCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccc
Q psy12303        190 LGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLL  269 (480)
Q Consensus       190 ~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~  269 (480)
                      ++...|..++.++++.+|+++|+++|++....  .+.+|++++|++++|.++|+++|+++|++||+|+|+|+||+++..+
T Consensus       162 ~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~--~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~  239 (445)
T d3bc8a1         162 FEPVVIENVLEGDELRTDLKAVEAKIQELGPE--HILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSK  239 (445)
T ss_dssp             CEEEEECCEEETTEEECCHHHHHHHHHHHCGG--GEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHH
T ss_pred             CeeEEEEeeccCcccccCHHHHHHHHHhcccc--CeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhh
Confidence            94322223345677999999999999876332  3889999999999999999999999999999999999999988765


Q ss_pred             cccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCc
Q psy12303        270 SKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI  349 (480)
Q Consensus       270 ~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~  349 (480)
                      +..... ...++.++|++++++||++++|.|+|++++++..........   +..                  .+.....
T Consensus       240 ~~~~~~-~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~---~~~------------------~~~~~~~  297 (445)
T d3bc8a1         240 CMHLIQ-QGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKM---YPG------------------RASASPS  297 (445)
T ss_dssp             HHHHHH-HHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHH---SCS------------------CBCSHHH
T ss_pred             ccccch-hccCcCCcceEEecCccccccCCCCceeeeCChHHHHHHHHH---Hhh------------------cccCcch
Confidence            433221 222344789999999999999999999999988766543211   110                  1112356


Q ss_pred             hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC---CeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhH
Q psy12303        350 FKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD---KFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITP  426 (480)
Q Consensus       350 l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~---g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~  426 (480)
                      +.+|+++..+|.+++.+..++...+++++.+.|.+ +.   +..++..+......+..... .......+    .    .
T Consensus       298 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~-l~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~~----~----~  367 (445)
T d3bc8a1         298 LDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKK-LAEAHNERLLQTPHNPISLAMTLKT-IDGHHDKA----V----T  367 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCBCCCTTCSSEEEEECTT-TSSSSSCH----H----H
T ss_pred             HHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH-HHhhcCceeecCCCCCcceEEEeee-ccccCCCC----H----H
Confidence            78999999999999999999999999999998876 43   55554444433333322211 11111001    1    1


Q ss_pred             HHHHHHHhcccE---EE--------------eeeeeCC--cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        427 ILKGRMMQAGTM---MV--------------GYQPLND--LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       427 ~i~~~l~~~g~~---~~--------------~~~~~~~--~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ++...|.+.|+.   +.              .+.....  ...++|++ ++..+|++|||++++.|++++++
T Consensus       368 ~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~-~~~~~T~eDID~~v~~L~kilk~  438 (445)
T d3bc8a1         368 QLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAA-AAIGMKMQDVDLFIKRLDKCLNI  438 (445)
T ss_dssp             HHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEE-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcceeeccccccchhhhhhhhcCCCCccCCCCeEEEe-CcCCCCHHHHHHHHHHHHHHHHH
Confidence            233344444421   11              1000000  03568999 88999999999999999998864

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=100.00  E-value=5.7e-35  Score=290.25  Aligned_cols=398  Identities=12%  Similarity=0.053  Sum_probs=271.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCcccCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHhhccCCcc-CCCCCccccccCC
Q psy12303          4 TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVR-TGHPMFMNQLSCG   82 (480)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~-~~~p~~~~~~~~~   82 (480)
                      .++..+.+++...+.++++.+                  ..++|++|.+.+++.+.++++...+.. +.+....+.....
T Consensus        14 ~~~~~~~~~~~~~~~~~~l~~------------------~~~lP~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~g~~~~~   75 (434)
T d2z67a1          14 MEKRGELVLNEYLKEIEDVFN------------------HRKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGEREAR   75 (434)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHH------------------HCSCCSSCCCHHHHHHHHHHHHTTBGGGCTTCEECSSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHh------------------cccCCCCCCCHHHHHHHHHHHHhcCcccccccccccceecc
Confidence            455666666666665555442                  135788899999999999887654432 3222222111111


Q ss_pred             CChHHhHHHHHHH---HcCcCC--cch--h--cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhc
Q psy12303         83 LDVVSMAGEWLIA---TANTNM--FTY--E--IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKM  153 (480)
Q Consensus        83 ~~~~~~~~~~l~~---~~~~~~--~~~--~--~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~  153 (480)
                       .+...+......   ....+.  ..+  .  .+.....+|.++..++++++|.+.....+..|+++++..++.+.|...
T Consensus        76 -~~~~~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~  154 (434)
T d2z67a1          76 -TYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKY  154 (434)
T ss_dssp             -CSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             -cchhHHhhcccccccccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhh
Confidence             111222111111   111111  111  0  122446788889999999999987655666666677777777665431


Q ss_pred             CchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccC
Q psy12303        154 FPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSG  233 (480)
Q Consensus       154 ~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~  233 (480)
                                  + +.+|++|...|+|+.+++..+|++...+..++.++++.+|+++|+++|+++.+.+. +.+|+++++
T Consensus       155 ------------~-~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~-~~~v~~~~~  220 (434)
T d2z67a1         155 ------------G-SNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGN-RPCVLSTLT  220 (434)
T ss_dssp             ------------C-CCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTC-CEEEEEESS
T ss_pred             ------------c-CceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHhhhhcCC-ceEEEeccC
Confidence                        2 33899999999999999999998432333334466789999999999998766553 568999999


Q ss_pred             CCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhH
Q psy12303        234 TTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLI  313 (480)
Q Consensus       234 ~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~  313 (480)
                      ++..|.++|+++|+++|++||+|+|||+||+++....+....  ..+..++|++++|+||++++|.|+|+++++++..++
T Consensus       221 ~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~--~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~  298 (434)
T d2z67a1         221 FFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLK--KAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIK  298 (434)
T ss_dssp             CCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHH--HHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHH
T ss_pred             cCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhcccccc--ccccCCcceEEEcCccccccCCCccccccCcHHHHH
Confidence            999999999999999999999999999999987654332211  112238999999999999999999999999887766


Q ss_pred             hhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CCeE
Q psy12303        314 SCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP---DKFY  390 (480)
Q Consensus       314 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~---~g~~  390 (480)
                      ........                     ++....+..+|+++..++.+++.+..++..++++++++.|++ +   .+..
T Consensus       299 ~~~~~~~~---------------------~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~-l~~~~g~~  356 (434)
T d2z67a1         299 EISLSYPG---------------------RASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLND-LSKKTGGK  356 (434)
T ss_dssp             HHHTTSCS---------------------CBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSSCC
T ss_pred             HHHhhccc---------------------ccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH-hhhhcCce
Confidence            54321110                     122246778899999999999999999999999999998876 4   4677


Q ss_pred             EecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccE---EEeeee-----eC--CcccEEEEecccCC
Q psy12303        391 LILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTM---MVGYQP-----LN--DLPNFFRNIISSAA  460 (480)
Q Consensus       391 ~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~---~~~~~~-----~~--~~~~~~R~~~~~~~  460 (480)
                      ++..+....+++.+...                 ..++...|.+.|+.   +..+..     ..  ...+++|++ ++..
T Consensus       357 ll~~~~~~~~~~~~~~~-----------------~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~-~s~~  418 (434)
T d2z67a1         357 FLDVESPIASCISVNSD-----------------PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMN-AAIG  418 (434)
T ss_dssp             BCCCCCSSEEEEECSSC-----------------HHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEE-CCTT
T ss_pred             ecCCCCCceeeeecCCC-----------------HHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEe-cCCC
Confidence            76666555555543211                 13455666677642   111100     00  114689999 8999


Q ss_pred             CCHHHHHHHHHHHHHh
Q psy12303        461 VTEGDIDFLLTEMDRL  476 (480)
Q Consensus       461 ~t~~di~~~~~~l~~~  476 (480)
                      +|+||||+++++|+++
T Consensus       419 ~T~edID~~i~~L~kI  434 (434)
T d2z67a1         419 VRTEDIVNSVSKLEKI  434 (434)
T ss_dssp             CCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHhcC
Confidence            9999999999999874

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=100.00  E-value=9.2e-34  Score=276.81  Aligned_cols=354  Identities=13%  Similarity=0.125  Sum_probs=244.7

Q ss_pred             CCCccccccCCCChHHhHH---HHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHH
Q psy12303         72 HPMFMNQLSCGLDVVSMAG---EWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLA  148 (480)
Q Consensus        72 ~p~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~  148 (480)
                      +-.||++...++.|..++.   +.+....+.....+..+....++..++++.+++++|+++++++||+|+|+|+..++.+
T Consensus         7 ~~~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~   86 (381)
T d1elua_           7 NKTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWG   86 (381)
T ss_dssp             TSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHH
T ss_pred             CCEEeeCCcccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchh
Confidence            3459999988888877664   3333333333344444555667777889999999999888999999999999988876


Q ss_pred             HHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH----cCCCCCCeEEeeCCCCCCCC--HHHHHHHHHHHHHCC
Q psy12303        149 ARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV----CGLGTDNCVEVPSDKRGRLI--PSELERLVLERKAKG  222 (480)
Q Consensus       149 ~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~----~g~~~~~v~~v~~~~~~~~d--~~~L~~~i~~~~~~~  222 (480)
                      ++.+             +|+ .|+++..+|+++..++..    .|+   +++.+|.+.+...+  .+.++++++++    
T Consensus        87 l~~~-------------~g~-~i~~~~~~~~s~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~l~~~i~~~----  145 (381)
T d1elua_          87 LDWH-------------QGD-EILLTDCEHPGIIAIVQAIAARFGI---TYRFFPVAATLNQGDAAAVLANHLGPK----  145 (381)
T ss_dssp             SCCC-------------TTC-EEEEETTCCHHHHHHHHHHHHHHCC---EEEEECCGGGSSSSCHHHHHHTTCCTT----
T ss_pred             hhhc-------------CCc-eEEEeccccceeeeccccccccccc---cccccccccccccchHHHHHHhhhccc----
Confidence            5332             445 788899999987776554    465   78888876544332  44555555544    


Q ss_pred             CccEEEEeccCCCccccccChHHHHHHHHHc----CcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc
Q psy12303        223 DIPFFVNCTSGTTVLGAFDPIEEIADICQKY----NMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL  298 (480)
Q Consensus       223 ~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~----~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p  298 (480)
                        |++|++++++|++|.+.|+++|.++||+|    ++++++|++|+.+..+.+...+       ++|++++++|||+++|
T Consensus       146 --t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~-------~~D~~~~s~~K~~~~p  216 (381)
T d1elua_         146 --TRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRL-------EVDYYAFTGHKWFAGP  216 (381)
T ss_dssp             --EEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTS-------CCSEEEEESSSTTCCC
T ss_pred             --ccccccccccccccccchhhHHHHHHhhccccccccccccccccccccccccccc-------cccccccccccccccc
Confidence              99999999999999999999999999985    6999999999999887776666       8999999999999999


Q ss_pred             ccceEEEEeCchhhHhhhcCCcccccccccccC--cccCCCCccccCCCCC--CchHHHHHHHHhcHHHH-HHHHHHHHH
Q psy12303        299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYD--VRYDTGDKVIQCGRHN--DIFKLWLQWRAKGDEGF-EKQIDRLME  373 (480)
Q Consensus       299 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~r~~--~~l~~~~~l~~~g~~~~-~~~~~~~~~  373 (480)
                      .|+|++++++... ....+....+.........  ..+......+..+.+.  ..+++..++..+...+. +.+.++..+
T Consensus       217 ~G~g~l~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~  295 (381)
T d1elua_         217 AGVGGLYIHGDCL-GEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQ  295 (381)
T ss_dssp             TTCEEEEECTTTG-GGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             chhhHHHhhHHHH-HhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhh
Confidence            9999999876643 2222111111100000000  0000000011111111  22344455554444443 455688889


Q ss_pred             HHHHHHHHHhcCCCCeEEecC--CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccE
Q psy12303        374 LAEYMVKKIKSMPDKFYLILE--PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNF  451 (480)
Q Consensus       374 l~~~l~~~l~~~~~g~~~~~~--~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~  451 (480)
                      +++++.+.|++ +++++++.+  +..++++|...... .              .+.+.+.|.+.|+. +..  ... +++
T Consensus       296 ~~~~l~~~L~~-~~~~~~~~~~~~~~~~vsf~~~~~~-~--------------~~~i~~~L~~~gi~-v~~--~~~-~~~  355 (381)
T d1elua_         296 RSEFLWRGLNQ-LPHVHCLATSAPQAGLVSFTVDSPL-G--------------HRAIVQKLEEQRIY-LRT--IAD-PDC  355 (381)
T ss_dssp             HHHHHHHHHHH-STTEEESCSSCCSSSEEEEEECSSS-C--------------HHHHHHHHHHTTEE-CEE--ETT-TTE
T ss_pred             HHHHHHHHHhc-CCCeEecCCCCccccEEEEEcCCCC-C--------------HHHHHHHHHhCCcE-EEe--cCC-CCE
Confidence            99999999999 999999853  56778888643211 0              23566788888843 321  223 679


Q ss_pred             EEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        452 FRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       452 ~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      +|+| +++++|++|||++++.|++++
T Consensus       356 lRis-~~~~nt~edid~ll~~l~e~~  380 (381)
T d1elua_         356 IRAC-CHYITDEEEINHLLARLADFG  380 (381)
T ss_dssp             EEEE-CCTTCCHHHHHHHHHHHTTCC
T ss_pred             EEEe-cCCCCCHHHHHHHHHHHHhhC
Confidence            9999 889999999999999998864

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.3e-33  Score=272.93  Aligned_cols=358  Identities=13%  Similarity=0.081  Sum_probs=252.9

Q ss_pred             CccccccCCCChHHhHHHHHHHH----cCcCCcchhcChhhHHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHH
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIAT----ANTNMFTYEIAPVFILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLA  148 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~  148 (480)
                      .||++..+++.|..++..+....    .|++...+..+...++..+++++.+++++|.. +.+++|++|+|+|+..++..
T Consensus        24 iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~  103 (405)
T d1jf9a_          24 AYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANS  103 (405)
T ss_dssp             EECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHH
T ss_pred             EEEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhc
Confidence            59999988888888875433322    23332233333334555667899999999974 47899999999999988876


Q ss_pred             HHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH----cCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCc
Q psy12303        149 ARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV----CGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDI  224 (480)
Q Consensus       149 ~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~----~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~  224 (480)
                      ......          .+|+ .|+++..+|++...+++.    .|+   +++.+|+++++.+|++.++++++++      
T Consensus       104 ~~~~~~----------~~g~-~il~~~~e~~s~~~~~~~~a~~~g~---~v~~~~~~~~g~~~~~~~~~~i~~~------  163 (405)
T d1jf9a_         104 WGNSNV----------RAGD-NIIISQMEHHANIVPWQMLCARVGA---ELRVIPLNPDGTLQLETLPTLFDEK------  163 (405)
T ss_dssp             HHHHHC----------CTTC-EEEEETTCCGGGTHHHHHHHHHHTC---EEEEECBCTTSCBCGGGHHHHCCTT------
T ss_pred             cccccc----------CCCC-EEEEEeCcccchHHHHHHHHHHcCc---EEEEECCCCCCcCCHHHHHHhccCC------
Confidence            443211          1435 889999999996666644    466   8999999999999999999988876      


Q ss_pred             cEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEE
Q psy12303        225 PFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTI  304 (480)
Q Consensus       225 ~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~  304 (480)
                      |++|++++.+|.+|.+.|+++|+++||++|++++||++|+.+.++.+...+       ++|++++|+|||+ +|.|+|++
T Consensus       164 t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~-------~~D~~~~s~hK~~-Gp~G~g~l  235 (405)
T d1jf9a_         164 TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQAL-------DCDFYVFSGHKLY-GPTGIGIL  235 (405)
T ss_dssp             EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH-------TCSEEEEEGGGTT-SCSSCEEE
T ss_pred             cEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccchhhc-------CCceeeccccccc-cCCCceee
Confidence            999999999999999999999999999999999999999999998887777       8999999999996 59999999


Q ss_pred             EEeCchhhHhhhcCCcccccccccc--cCcccCCCCccccCCCC-C-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q psy12303        305 HFKQDGLLISCNQMSAEYLFMQDKL--YDVRYDTGDKVIQCGRH-N-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVK  380 (480)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~r~-~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~  380 (480)
                      ++++. .+.........+.......  ....+......++.|.+ + ..+++..+++.+...+++...++...+.+++.+
T Consensus       236 ~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~  314 (405)
T d1jf9a_         236 YVKEA-LLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALS  314 (405)
T ss_dssp             EECHH-HHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             eechh-hhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh
Confidence            98754 3332211111111000000  00011111112222222 1 344555666655566778888889999999999


Q ss_pred             HHhcCCCCeEEecCC-ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeee--------CCcccE
Q psy12303        381 KIKSMPDKFYLILEP-EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPL--------NDLPNF  451 (480)
Q Consensus       381 ~l~~~~~g~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~--------~~~~~~  451 (480)
                      .++. .+.+.+..+. ..++++|......                ..++...|.+.| +.++.+..        .+..++
T Consensus       315 ~l~~-~~~~~~~~~~~r~~ivsf~~~~~~----------------~~~~~~~L~~~g-I~v~~G~~c~~~~~~~~~~~g~  376 (405)
T d1jf9a_         315 QLES-VPDLTLYGPQNRLGVIAFNLGKHH----------------AYDVGSFLDNYG-IAVRTGHHCAMPLMAYYNVPAM  376 (405)
T ss_dssp             HHTT-STTEEEESCTTCCSEEEEEETTCC----------------HHHHHHHHHHTT-EECEEECTTCHHHHHHTTCSCE
T ss_pred             hhhc-CCcccccCCcCcCcEEEEEcCCCC----------------HHHHHHHHHHCC-cEEEccchhhhhHHHhcCCCCE
Confidence            9999 8888876543 3567777542111                234556666677 44432211        122578


Q ss_pred             EEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        452 FRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       452 ~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +|+| +++++|++|||+++++|+++.+-
T Consensus       377 iRiS-~~~ynt~eDid~l~~~l~~i~r~  403 (405)
T d1jf9a_         377 CRAS-LAMYNTHEEVDRLVTGLQRIHRL  403 (405)
T ss_dssp             EEEE-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHHHHHHh
Confidence            9999 99999999999999999998763

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=100.00  E-value=4.3e-32  Score=266.69  Aligned_cols=354  Identities=14%  Similarity=0.053  Sum_probs=252.6

Q ss_pred             CccccccCCCChHHhHHHHHHHHc----CcCCcchhcChhhHHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHH
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIATA----NTNMFTYEIAPVFILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLA  148 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~  148 (480)
                      .||++..+++.|..++..+...+.    |++...+..+....++-+++++.+++++|++ +..+++++++|+++..++..
T Consensus        24 iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~  103 (408)
T d1t3ia_          24 VYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYS  103 (408)
T ss_dssp             EECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHH
T ss_pred             EEeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhh
Confidence            599999999888888754433332    2222333334444556667899999999996 46788999999998887766


Q ss_pred             HHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHH----HcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCc
Q psy12303        149 ARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAA----VCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDI  224 (480)
Q Consensus       149 ~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~----~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~  224 (480)
                      .....+          .+|+ +|+++..+|++...+++    ..|.   .++.+|.+.++..+.+.|+++++++      
T Consensus       104 ~~~~~~----------~~g~-~il~s~~e~~s~~~~~~~~~~~~g~---~v~~~~~~~~~~~~~~~l~~~~~~~------  163 (408)
T d1t3ia_         104 WGMNNL----------KAGD-EIITTVMEHHSNLVPWQMVAAKTGA---VLKFVQLDEQESFDLEHFKTLLSEK------  163 (408)
T ss_dssp             THHHHC----------CTTC-EEEEETTCCGGGTHHHHHHHHHHCC---EEEEECBCTTSSBCHHHHHHHCCTT------
T ss_pred             cccccc----------CCCC-EEEeecccchhhhhhhhhhhhccCc---eEeeeeccccccccHHHhhhccCCC------
Confidence            433211          1445 88899999998766554    3466   8899999999999999999998776      


Q ss_pred             cEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEE
Q psy12303        225 PFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTI  304 (480)
Q Consensus       225 ~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~  304 (480)
                      |++|++++.++.+|.+.|+++|.++|+++|+++|+|++|+.+.++.+...+       ++|++++|+|||+ +|.|+|++
T Consensus       164 t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~-------~~D~~~~s~hK~~-gp~G~g~l  235 (408)
T d1t3ia_         164 TKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLI-------DCDWLVASGHKMC-APTGIGFL  235 (408)
T ss_dssp             EEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH-------TCSEEEEEGGGTT-SCTTCEEE
T ss_pred             ceEEEEecccccccccCcHHHHhhhhhccCceeeeccceeccccccccccc-------CCceEEecccccc-CCCCcccc
Confidence            999999999999999999999999999999999999999999999888777       8999999999995 58999999


Q ss_pred             EEeCchhhHhhhcCCcccccccccc-----cCcccCCCCccccCCCC-C-CchHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q psy12303        305 HFKQDGLLISCNQMSAEYLFMQDKL-----YDVRYDTGDKVIQCGRH-N-DIFKLWLQWRAKGDEGFEKQIDRLMELAEY  377 (480)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~r~-~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~  377 (480)
                      ++++... ...    +++..+....     ....+......++.|.. + ..+++..+++.+...|++++.++...+.++
T Consensus       236 ~v~~~~~-~~~----~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~  310 (408)
T d1t3ia_         236 YGKEEIL-EAM----PPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHY  310 (408)
T ss_dssp             EECHHHH-HHS----CCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ccchhhh-hcC----CceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhH
Confidence            9886543 222    2222211100     00001111112222222 1 334455556655556777888888999999


Q ss_pred             HHHHHhcCCCCeEEecCC-----ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeee--------
Q psy12303        378 MVKKIKSMPDKFYLILEP-----EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQP--------  444 (480)
Q Consensus       378 l~~~l~~~~~g~~~~~~~-----~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~--------  444 (480)
                      +.+.+.+ .+++.++++.     ..++++|......                ..++...|.+.|+ .++.+.        
T Consensus       311 l~~~~~~-~~~~~~~~~~~~~~~~~~iv~f~~~~~~----------------~~~v~~~L~~~gI-~v~~G~~c~~~~~~  372 (408)
T d1t3ia_         311 LWQGLGQ-IPQLRLYGPNPKHGDRAALASFNVAGLH----------------ASDVATMVDQDGI-AIRSGHHCTQPLHR  372 (408)
T ss_dssp             HHHHHHT-CTTEEEESCCGGGSCBCSEEEEEETTBC----------------HHHHHHHHHTTTE-ECBCSCTTCHHHHH
T ss_pred             Hhhhhcc-CccccccCCCccccCcceEEEEEeCCCC----------------HHHHHHHHhhCCc-EEecCcccccHHHH
Confidence            9999999 8999988642     3467777542211                2356677777774 343211        


Q ss_pred             eCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        445 LNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       445 ~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ..+..+++|+| +++++|++|||++++.|+++++.
T Consensus       373 ~~~~~g~vRiS-~~~ynt~~did~li~~L~~~~~~  406 (408)
T d1t3ia_         373 LFDASGSARAS-LYFYNTKEEIDLFLQSLQATIRF  406 (408)
T ss_dssp             HTTCCCCEEEE-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCccEEEE-CCCCCCHHHHHHHHHHHHHHHHH
Confidence            11225689999 99999999999999999998764

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-31  Score=261.48  Aligned_cols=350  Identities=15%  Similarity=0.152  Sum_probs=235.2

Q ss_pred             CCccccccCCCChHHhHHHHHHHHcCc-------CCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHH
Q psy12303         73 PMFMNQLSCGLDVVSMAGEWLIATANT-------NMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYA  145 (480)
Q Consensus        73 p~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~a  145 (480)
                      |-|+++..+++.++.++ +.+..++..       ....+..+...+++.+++++.+++++|+++++++||+|+|+++..+
T Consensus         3 ~iYlD~aa~~p~~~~v~-ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~   81 (391)
T d1p3wa_           3 PIYLDYSATTPVDPRVA-EKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLA   81 (391)
T ss_dssp             SEECBTTTCCCCCHHHH-HHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHH
T ss_pred             eEEeeCccccCCCHHHH-HHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHH
Confidence            67999988888888777 444444321       1112223334456666789999999999999999999999999988


Q ss_pred             HHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCcc
Q psy12303        146 FLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIP  225 (480)
Q Consensus       146 l~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~  225 (480)
                      +.++....+          .+|+ +|++++.+|+++...++.+...+.+++.+|.++++.+|+++++++++++      |
T Consensus        82 ~~~~~~~~~----------~~gd-~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~~~------T  144 (391)
T d1p3wa_          82 IKGAANFYQ----------KKGK-HIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDD------T  144 (391)
T ss_dssp             HHHHHHHHG----------GGCC-EEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTT------E
T ss_pred             Hhhhhhhhc----------CCCC-EEEEeccccchHHHHHHHHHHcCCEEEEeCCCCCCeEcHHHHHHhCCCC------c
Confidence            887654211          1445 8999999999987776654222228999999999999999999999876      9


Q ss_pred             EEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEE
Q psy12303        226 FFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIH  305 (480)
Q Consensus       226 ~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~  305 (480)
                      ++|++++++|+||.+.|+++|+++||+||+++++|++|+.+..+.+....       ++|++++++|||+ +|.++|+++
T Consensus       145 ~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~-------~~D~~~~s~~k~~-g~~g~g~~~  216 (391)
T d1p3wa_         145 ILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQL-------KVDLMSFSGHKIY-GPKGIGALY  216 (391)
T ss_dssp             EEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTS-------CCSEEEEESTTTT-SCSSCEEEE
T ss_pred             EEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCccccchhc-------ccccccccccccc-CCCceEEEE
Confidence            99999999999999999999999999999999999999999888777666       8999999999996 578999999


Q ss_pred             EeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12303        306 FKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM  385 (480)
Q Consensus       306 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~  385 (480)
                      ++..... ..   .+.+. +....  ..+..+....     ....++...+.. ..+...+..++..++..++.+.|.+ 
T Consensus       217 ~~~~~~~-~~---~~~~~-gg~~~--~~~~~~~~~~-----~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~-  282 (391)
T d1p3wa_         217 VRRKPRV-RI---EAQMH-GGGHE--RGMRSGTLPV-----HQIVGMGEAYRI-AKEEMATEMERLRGLRNRLWNGIKD-  282 (391)
T ss_dssp             ECBTTBC-CC---CCSSC-SSCTT--TTTSCSCCCH-----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred             Eecchhc-cc---CCccc-CCccc--cCcccCcchh-----hhhhhhhhhhhH-HHHHhhHHHHHHHHHHHHHHHHHHh-
Confidence            8775322 11   11111 11000  0011111100     011122222222 2344566677888899999999999 


Q ss_pred             CCCeEEecCCc---eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHH----HhcccEEEeeeeeC-------C----
Q psy12303        386 PDKFYLILEPE---MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRM----MQAGTMMVGYQPLN-------D----  447 (480)
Q Consensus       386 ~~g~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l----~~~g~~~~~~~~~~-------~----  447 (480)
                      +++..+.....   ..++.|...  ..   ..           ..+...|    ...|..+.......       +    
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~--~~---~~-----------~~~~~~l~~i~v~~G~~c~~~~~~~~~~l~~~g~~~~  346 (391)
T d1p3wa_         283 IEEVYLNGDLEHGAPNILNVSFN--YV---EG-----------ESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDE  346 (391)
T ss_dssp             STTEEECSCTTTSCTTEEEEEET--TS---CH-----------HHHHHHTTTEECBCCCC------CCCHHHHHHTCCHH
T ss_pred             hcCeeecccccccCceEEEEEeC--CC---Ch-----------HHHHHHhCCCEEEccccccCCccchhHHHHHcCCCcc
Confidence            77877643221   223333321  11   11           1222222    22232221111000       0    


Q ss_pred             -cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        448 -LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       448 -~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                       ..+++|+| +++++|++|||+++++|++++++
T Consensus       347 ~~~g~iRiS-~~~~nt~edid~l~~~l~~~l~~  378 (391)
T d1p3wa_         347 LAHSSIRFS-LGRFTTEEEIDYTIELVRKSIGR  378 (391)
T ss_dssp             HHHTEEEEE-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEe-cCCCCCHHHHHHHHHHHHHHHHH
Confidence             03589999 89999999999999999998764

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.97  E-value=7.5e-29  Score=240.13  Aligned_cols=312  Identities=16%  Similarity=0.227  Sum_probs=208.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCC
Q psy12303        113 METVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGT  192 (480)
Q Consensus       113 ~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~  192 (480)
                      +.+.+.+.+|+++|.+.  +++|+|||+||+.++.+..+              ||+ +|+++..+|+|+..++...|.  
T Consensus        48 l~~~~~~~~A~~~g~e~--~~~t~g~t~a~~~~~~al~~--------------~gd-~Vi~~~~~h~s~~~~~~~~g~--  108 (364)
T d2e7ja1          48 IHDFIHNQLPKFLGCDV--ARVTNGAREAKFAVMHSLAK--------------KDA-WVVMDENCHYSSYVAAERAGL--  108 (364)
T ss_dssp             HHHHHHTHHHHHTTSSE--EEEESSHHHHHHHHHHHHCC--------------TTC-EEEEETTCCHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHhCcCE--EEEECcHHHHHHHHHHHHhC--------------CCc-EEEeecccccccchHHHhccc--
Confidence            34456677999999875  89999999999999988754              556 899999999999999999998  


Q ss_pred             CCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccc
Q psy12303        193 DNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLS  270 (480)
Q Consensus       193 ~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~  270 (480)
                       +++.+|+++  ++.+|++++++++++..+. ..+.+|++++++|++|.+.|+++|.++|++||+++|+|+||+.+.++.
T Consensus       109 -~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~-~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~  186 (364)
T d2e7ja1         109 -NIALVPKTDYPDYAITPENFAQTIEETKKR-GEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPV  186 (364)
T ss_dssp             -EEEEECCCCTTTCCCCHHHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCC
T ss_pred             -eEEEeeeccccccccCHHHHHhhhhhhccc-CCceEEEeecCCCCCceeecchhheeccccccchhhccccchhhhhhh
Confidence             888999864  5789999999999887543 346789999999999999999999999999999999999999888776


Q ss_pred             ccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC-Cc
Q psy12303        271 KKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN-DI  349 (480)
Q Consensus       271 ~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~-~~  349 (480)
                      +....       ++|++++|+||++++|.++|+++.++. ...........+......           ...+.... ..
T Consensus       187 ~~~~~-------g~D~~~~S~~K~~~~~g~~g~l~~~~~-~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~  247 (364)
T d2e7ja1         187 SLKEI-------GADFIVGSGHKSMAASGPIGVMGMKEE-WAEIVLRRSEKYKNKEVE-----------LLGCTARGATI  247 (364)
T ss_dssp             CHHHH-------TCSEEEEEHHHHSSCCSSCEEEEECTT-TTTTTTCBCSSCTTSBGG-----------GTTCCCCSHHH
T ss_pred             ccccc-------ccceeeeccccccCCCCCEEEEEECHH-HHHHHHhhccccCccccc-----------ccccccchhHH
Confidence            65555       789999999999998888898887654 332222111122111000           00011101 11


Q ss_pred             hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-CceeEEEEEeecCccCCCchhhHHHHhhhhhHHH
Q psy12303        350 FKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPIL  428 (480)
Q Consensus       350 l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i  428 (480)
                      ..+..++... .+.+ +..++..++++++.+.|.+  .|+.++.. |....+.|...+..      .+............
T Consensus       248 ~~~~~~l~~~-~~~~-~~~~~~~~~~~~~~~~l~~--~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  317 (364)
T d2e7ja1         248 ITLMASFPHV-RERI-KRWDEEVEKARRFAAEMEK--LGIKQLGDNPHNHDLMFFHAEVL------YEISKKAKGGRFFL  317 (364)
T ss_dssp             HHHHHHHHHH-HHHG-GGHHHHHHHHHHHHHHHHH--TTCEEESSSSCCSSEEEEECHHH------HHHHHHSSSGGGHH
T ss_pred             HHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHH--cCCeecCCCCCCcceEEEeccch------HHHHHHhhccchHH
Confidence            2222222221 1222 2234445678889999998  47766543 33333444322211      01111111111223


Q ss_pred             HHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        429 KGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       429 ~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      ...+...+...+    ..+....+|++  ++.+|++||++++++|++++++.
T Consensus       318 ~~~l~~~~~~~~----~~g~~~~~~~~--~~~~t~edid~~~~~l~ei~~~y  363 (364)
T d2e7ja1         318 YRELKSRKIHGI----KPGLTRYFKLS--TYGLSDEEVDYVLNAFKEIIEKY  363 (364)
T ss_dssp             HHHHHHTTEECS----CTTCCSEEEEE--CTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhcCCcee----cCCCcceEEEe--ccCCCHHHHHHHHHHHHHHHHHh
Confidence            445555553221    12324567765  35679999999999999998763

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.96  E-value=3.1e-29  Score=246.46  Aligned_cols=357  Identities=13%  Similarity=0.078  Sum_probs=230.0

Q ss_pred             CCCccccccCCCChHHhHHHHHHHHcCc--CC--cchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHH
Q psy12303         72 HPMFMNQLSCGLDVVSMAGEWLIATANT--NM--FTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFL  147 (480)
Q Consensus        72 ~p~~~~~~~~~~~~~~~~~~~l~~~~~~--~~--~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~  147 (480)
                      +..||++...++.|..+...+...+.+.  +.  ..|... ...++.+++++.+++++|+++.+++||+++|+++..++.
T Consensus        27 ~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~-~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~  105 (404)
T d1qz9a_          27 GVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSA-GWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLS  105 (404)
T ss_dssp             TCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHT-SGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHH
T ss_pred             CCEEcCCcccccCCHHHHHHHHHHHHHHhcccCcccccch-hHHHHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhh
Confidence            4569999988888887775444333232  11  122222 223556678999999999999999999999999988776


Q ss_pred             HHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEE
Q psy12303        148 AARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFF  227 (480)
Q Consensus       148 ~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~  227 (480)
                      ......    ...+    +++ .+++++..|++........+.   ++..++.+.++..+++.++++++++      |++
T Consensus       106 ~~~~~~----~~~~----~~~-~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~------T~l  167 (404)
T d1qz9a_         106 AALRVQ----ATRS----PER-RVIVTETSNFPTDLYIAEGLA---DMLQQGYTLRLVDSPEELPQAIDQD------TAV  167 (404)
T ss_dssp             HHHHHH----HHHS----TTC-CEEEEETTSCHHHHHHHHHHH---HHHCSSCEEEEESSGGGHHHHCSTT------EEE
T ss_pred             hhhhhh----cccC----CCc-EEEEeccccchHHHHHHhhhh---eeeeeceeccccccchhHHHhcCCC------ceE
Confidence            543210    0011    334 444555566655444443333   2233344445566888899988776      999


Q ss_pred             EEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCccc-ceEEEE
Q psy12303        228 VNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ-CSTIHF  306 (480)
Q Consensus       228 v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~-~g~~~~  306 (480)
                      |++++.+|.+|.+.|+++|+++|+++|++++||++|+.+..+.+....       ++|++++++|||+++|.+ +|+++.
T Consensus       168 V~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~-------~~d~~~~s~~K~~~~~~g~~g~~~~  240 (404)
T d1qz9a_         168 VMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQA-------GADYAIGCTYKYLNGGPGSQAFVWV  240 (404)
T ss_dssp             EEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHH-------TCSEEEECSSSTTCCCTTCCCEEEE
T ss_pred             EEEecccccccceecHHHHhccccccccceeEEeeccccccccccccc-------cceEEEEechhhcccCCceEEEEEe
Confidence            999999999999999999999999999999999999999998887777       899999999999977666 555554


Q ss_pred             eCchhhHhhhcCCcccccccccc---cCcccCCCCccccCCCCC--CchHHHHHHH---HhcHHHHHHHHHHHHHHHHHH
Q psy12303        307 KQDGLLISCNQMSAEYLFMQDKL---YDVRYDTGDKVIQCGRHN--DIFKLWLQWR---AKGDEGFEKQIDRLMELAEYM  378 (480)
Q Consensus       307 ~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~r~~--~~l~~~~~l~---~~g~~~~~~~~~~~~~l~~~l  378 (480)
                      + ...+.........+.......   .......+......+...  ........+.   ..+.+.+.+...........+
T Consensus       241 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  319 (404)
T d1qz9a_         241 S-PQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIEL  319 (404)
T ss_dssp             C-TTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             c-hhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHH
Confidence            4 443332211111111110000   000000000011111111  1122222222   346666776666777777777


Q ss_pred             HHHHhcCCCCeEEecCCc----eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEE
Q psy12303        379 VKKIKSMPDKFYLILEPE----MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRN  454 (480)
Q Consensus       379 ~~~l~~~~~g~~~~~~~~----~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~  454 (480)
                      .+.+.. .++++++++..    .++++|...  +                ..++.+.|.++|++ ++.   .. ++++|+
T Consensus       320 ~~~~~~-~~~~~i~~p~~~~~r~~~vsf~~~--~----------------~~~v~~~L~~~gi~-~~~---r~-~~~lRi  375 (404)
T d1qz9a_         320 VEQRCA-AHELTLVTPREHAKRGSHVSFEHP--E----------------GYAVIQALIDRGVI-GDY---RE-PRIMRF  375 (404)
T ss_dssp             HHHHHT-TSCCEECSCSSGGGBCSEEEEECT--T----------------HHHHHHHHHTTTEE-CEE---ET-TTEEEE
T ss_pred             HHhhcc-CCCEEEECCCCccceeeEEEEecC--C----------------HHHHHHHHHHCCCE-Eee---cC-CCeEEE
Confidence            777777 79999987532    466777532  1                24577888888843 222   12 469999


Q ss_pred             ecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        455 IISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       455 ~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      |+.+.++|++||++++++|++++++
T Consensus       376 S~~h~ynt~~did~~~~~L~~vl~~  400 (404)
T d1qz9a_         376 GFTPLYTTFTEVWDAVQILGEILDR  400 (404)
T ss_dssp             ECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHh
Confidence            9446789999999999999998864

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=1e-27  Score=233.10  Aligned_cols=344  Identities=15%  Similarity=0.138  Sum_probs=230.2

Q ss_pred             CccccccCCCChHHhHHHHHHHHcCc--CCc-chhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHH
Q psy12303         74 MFMNQLSCGLDVVSMAGEWLIATANT--NMF-TYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAAR  150 (480)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~-~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~  150 (480)
                      .||++..+++.|+.++..+.+.+.+.  |+. .+..+....++-+++++.+++++|+++++++|++|+|+++..++....
T Consensus         3 iyld~a~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~   82 (376)
T d1eg5a_           3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVA   82 (376)
T ss_dssp             EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHH
T ss_pred             EEEECcccccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhccc
Confidence            48999888888888885544433222  111 112233344555577999999999999999999999999988887654


Q ss_pred             HhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHc---CCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEE
Q psy12303        151 HKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVC---GLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFF  227 (480)
Q Consensus       151 ~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~---g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~  227 (480)
                      ....          .+|+ .|+++...|++.....+.+   |.   +++.+|+++++.+|+++++++++++      |++
T Consensus        83 ~~~~----------~~g~-~v~~~~~~~~~~~~~~~~~~~~g~---~v~~vp~~~~~~id~~~l~~~i~~~------t~l  142 (376)
T d1eg5a_          83 ETFE----------KRKR-TIITTPIEHKAVLETMKYLSMKGF---KVKYVPVDSRGVVKLEELEKLVDED------TFL  142 (376)
T ss_dssp             HHTT----------TTCC-EEEECTTSCHHHHHHHHHHHHTTC---EEEECCBCTTSCBCHHHHHHHCCTT------EEE
T ss_pred             cccc----------ccCc-ccccccccchhhHHHHHHHHhcCC---EEEEEcCCCCCeECHHHHHHhcCCC------ceE
Confidence            3211          1324 7888888888877766555   55   8999999999999999999999876      999


Q ss_pred             EEeccCCCccccccChHHHHHHHHHc--CcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEE
Q psy12303        228 VNCTSGTTVLGAFDPIEEIADICQKY--NMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIH  305 (480)
Q Consensus       228 v~~~~~~~~~G~~~~l~~I~~i~~~~--~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~  305 (480)
                      |+++++++++|.+.|++++.++++++  ++.++||++|+.+..+.+....       ++|++++++|||+ +|.|+|+++
T Consensus       143 v~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~-------~~D~~~~s~~K~~-gp~G~~~l~  214 (376)
T d1eg5a_         143 VSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKL-------EVDYASFSAHKFH-GPKGVGITY  214 (376)
T ss_dssp             EEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTT-------CCSEEEEEGGGGT-SCTTCEEEE
T ss_pred             EEEECCccccceeeeehhhhhhhhhcccCceeEEEeeecccccccccccc-------Cccceecccceee-cCCCceeEE
Confidence            99999999999999999999998766  8999999999999998877666       8999999999996 589999999


Q ss_pred             EeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12303        306 FKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM  385 (480)
Q Consensus       306 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~  385 (480)
                      ++....+      .+.+. +....  ..+..+..      ............................+.+++.+.|.. 
T Consensus       215 ~~~~~~~------~p~~~-g~~~~--~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-  278 (376)
T d1eg5a_         215 IRKGVPI------RPLIH-GGGQE--RGLRSGTQ------NVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN-  278 (376)
T ss_dssp             ECTTSCC------CCSBC-SSCTT--TTTBCSCC------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             eccCccc------CCccc-CCCCc--ccccCCcc------cchhhhhHHHHhhccccchhhhhhhhhhhhhhhcccccc-
Confidence            8765321      12211 11100  00111110      011111111111122334455666777788889999988 


Q ss_pred             CCCeEEecC--CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeee------ee--------CCc-
Q psy12303        386 PDKFYLILE--PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQ------PL--------NDL-  448 (480)
Q Consensus       386 ~~g~~~~~~--~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~------~~--------~~~-  448 (480)
                      .....+...  .....+.+.+.  ...              ...+...|.+.|+. +..+      ..        .+. 
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~--~~~--------------~~~~~~~L~~~gI~-vr~G~~c~~~~~~~~~~l~~~gi~  341 (376)
T d1eg5a_         279 LGAHIITPLEISLPNTLSVSFP--NIR--------------GSTLQNLLSGYGIY-VSTSSACTSKDERLRHVLDAMGVD  341 (376)
T ss_dssp             TTCEECSCTTSBCTTEEEEECT--TCC--------------HHHHHHHHHHTTEE-CBC------------CHHHHTTCC
T ss_pred             ccccccccccccccceeeeccC--CCC--------------HHHHHHHHhhCCeE-EeCcchhcCCccchhHHHHHcCCC
Confidence            444433221  22333444321  111              23445555566632 2111      00        010 


Q ss_pred             ----ccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        449 ----PNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       449 ----~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                          .+++|+| +++++|++|||+++++|++++.-
T Consensus       342 ~~~~~~~iRiS-~~~ynt~edid~l~~~L~~iv~~  375 (376)
T d1eg5a_         342 RRIAQGAIRIS-LCKYNTEEEVDYFLKKIEEILSF  375 (376)
T ss_dssp             HHHHHHEEEEE-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEe-cCCCCCHHHHHHHHHHHHHHHhh
Confidence                3579999 88999999999999999998763

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.1e-28  Score=236.99  Aligned_cols=353  Identities=13%  Similarity=0.128  Sum_probs=232.9

Q ss_pred             CCccccccCCCChH-HhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCC-CeEECCChhHHHHHHHHHHH
Q psy12303         73 PMFMNQLSCGLDVV-SMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGG-DSILAPGGSISNLYAFLAAR  150 (480)
Q Consensus        73 p~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~-~~~~t~ggt~a~~~al~~~~  150 (480)
                      |+++-+.|+|...+ .++    .++... ...+ .++-+.++.+++++.+++++|.++. .++|+.|||+++..++....
T Consensus        18 ~~~~l~~pGP~~~~~~Vl----~am~~~-~i~H-Rs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~   91 (388)
T d1h0ca_          18 PNQLLLGPGPSNLPPRIM----AAGGLQ-MIGS-MSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVL   91 (388)
T ss_dssp             CCCEECSSSCCCCCHHHH----HHHTCC-CCCT-TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC
T ss_pred             CcCccccCCCCCCCHHHH----HHhCcC-CCCC-CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhh
Confidence            55555666654433 333    222222 2222 3667788888999999999999754 68899999999999988775


Q ss_pred             HhcCchhHhcCCCccCCceEEEecCCCchhHHHHH--HHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEE
Q psy12303        151 HKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA--AVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFV  228 (480)
Q Consensus       151 ~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~--~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v  228 (480)
                      .              +|+ .+++....|++.....  ...+.   .+..++.+....+|.+.+++.+....     +++|
T Consensus        92 ~--------------~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v  148 (388)
T d1h0ca_          92 E--------------PGD-SFLVGANGIWGQRAVDIGERIGA---RVHPMTKDPGGHYTLQEVEEGLAQHK-----PVLL  148 (388)
T ss_dssp             C--------------SSC-CEEECBSSHHHHHHHHHHHHHC-----CBCCBCCTTCCCCHHHHHHHHHHHC-----CSEE
T ss_pred             c--------------cCC-ceeeecccceeeeeccccccccc---cccccccCCccccchHHHHHHhccCC-----cceE
Confidence            4              334 5666666777654443  33344   55566677778899999888877642     7899


Q ss_pred             EeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeC
Q psy12303        229 NCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQ  308 (480)
Q Consensus       229 ~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~  308 (480)
                      ++++.+|.+|.+.|+++|.++|++||+++++|++++.+..+.+...+       ++|++++++|||+++|.|+|+++++.
T Consensus       149 ~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~-------~~D~~~~s~~K~~~gp~g~~~~~~~~  221 (388)
T d1h0ca_         149 FLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQ-------GIDILYSGSQKALNAPPGTSLISFSD  221 (388)
T ss_dssp             EEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTT-------TCSEEEEESSSTTCCCTTCEEEEECH
T ss_pred             EEeeeeeccccccCHHHHHHHhhcccccceecccccccccccccccc-------ccceecccccccccCCCceEEEeecH
Confidence            99999999999999999999999999999999999999998887777       89999999999999999999988765


Q ss_pred             chhhHhhhcCCc----cccccccc-ccCcccCCCCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q psy12303        309 DGLLISCNQMSA----EYLFMQDK-LYDVRYDTGDKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKI  382 (480)
Q Consensus       309 ~~~~~~~~~~~~----~~l~~~~~-~~~~~~~~~~~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l  382 (480)
                      .. ++.......    .|+..... .+....+. ......+-.. ...++..++..+...|++.+.++..++.+++++.+
T Consensus       222 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~  299 (388)
T d1h0ca_         222 KA-KKKMYSRKTKPFSFYLDIKWLANFWGCDDQ-PRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRL  299 (388)
T ss_dssp             HH-HHHHTTCSSCCSCSTTCHHHHHHHTTCSSS-CCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHhhhhccccccccccccchhhhhhhhccc-cccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHH
Confidence            43 332221111    11110000 00000000 0000111111 22234444555555677888889999999999999


Q ss_pred             hcCCCCeEEec-CCc---eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEeccc
Q psy12303        383 KSMPDKFYLIL-EPE---MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISS  458 (480)
Q Consensus       383 ~~~~~g~~~~~-~~~---~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~  458 (480)
                      .+  .++.++. ++.   .++++|.+ |...+              ..++...|.++..+.+..+......+.+|++.++
T Consensus       300 ~~--~g~~~~~~~~~~rs~~i~~~~~-p~~~~--------------~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g  362 (388)
T d1h0ca_         300 QA--LGLQLFVKDPALRLPTVTTVAV-PAGYD--------------WRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLG  362 (388)
T ss_dssp             HH--HTCCBSSCSGGGBCTTEEEEEC-CTTCC--------------HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCG
T ss_pred             hh--cCcccccCCHHHcCCeEEEEEC-CCCCC--------------HHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCC
Confidence            88  4655543 221   23556643 32221              2456667766633544432211124689998557


Q ss_pred             CCCCHHHHHHHHHHHHHhhccC
Q psy12303        459 AAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       459 ~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      +++|++|||+++++|++++++|
T Consensus       363 ~~~t~edid~li~aL~~~L~~l  384 (388)
T d1h0ca_         363 CNATRENVDRVTEALRAALQHC  384 (388)
T ss_dssp             GGCSHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHh
Confidence            8899999999999999998764

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=6.5e-27  Score=226.12  Aligned_cols=322  Identities=14%  Similarity=0.140  Sum_probs=203.6

Q ss_pred             hhhHHHHHHHHHHHHHHhCCCCCC--eEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH-HH
Q psy12303        108 PVFILMETVVLEKMRQIIGWQGGD--SILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR-SC  184 (480)
Q Consensus       108 ~~~~~~e~~~~~~la~~~g~~~~~--~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~-~~  184 (480)
                      +.+.++.+++++.+++++|++++.  +++|+|||+++..++.....              +++.+++++...+.+.. ..
T Consensus        29 ~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~--------------~~~~~~~~~~~~~~~~~~~~   94 (361)
T d1m32a_          29 DYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALG--------------PQDKVLIVSNGAYGARMVEM   94 (361)
T ss_dssp             HHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCC--------------TTCCEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhh--------------hccccceeeehhhhhhHHHH
Confidence            334555678899999999998755  77889999999888765532              22436666655544433 33


Q ss_pred             HHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccc
Q psy12303        185 AAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWG  264 (480)
Q Consensus       185 ~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~  264 (480)
                      +...+.   ....+........+.+..+.....    ..++++|.+++.+|.+|.+.|+++|.++|++||+++++|++++
T Consensus        95 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs  167 (361)
T d1m32a_          95 AGLMGI---AHHAYDCGEVARPDVQAIDAILNA----DPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSS  167 (361)
T ss_dssp             HHHHTC---CEEEEECCTTSCCCHHHHHHHHHH----CTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTT
T ss_pred             hhhhhc---ccccccccccCCccchhhHHHHHh----ccCccceEEEeeecccccchhhhhhhhhhcccceeeEeecccc
Confidence            333444   445555544444444333332222    1238899999999999999999999999999999999999999


Q ss_pred             ccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCC
Q psy12303        265 GGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCG  344 (480)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  344 (480)
                      .+..+.+..+.       ++|++++++|||+++|.|.|+++++++... ........+........ ............+
T Consensus       168 ~G~~~~d~~~~-------~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~t  238 (361)
T d1m32a_         168 FGGIPMDIAAL-------HIDYLISSANKCIQGVPGFAFVIAREQKLA-ACKGHSRSLSLDLYAQW-RCMEDNHGKWRFT  238 (361)
T ss_dssp             TTTSCCCTTTT-------TCSEEEEESSSTTCCCSSEEEEEEEHHHHT-TCTTCCSCSTTCHHHHH-HHHHHTTTCCSSC
T ss_pred             cCccccccccc-------ccceEEeeecccccCCCCceEEEechhhhh-hhccccccccccchhhh-ccccccccccCCC
Confidence            99998888777       999999999999999999999999865332 22111111110000000 0000000001111


Q ss_pred             CC-CCchHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc--e-eEEEEEeecCccCCCchhhHHH
Q psy12303        345 RH-NDIFKLWLQWRAKGDEG-FEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE--M-VNVSFWYLPTRVRNMPHEKRLN  419 (480)
Q Consensus       345 r~-~~~l~~~~~l~~~g~~~-~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~--~-~~v~f~~~~~~~~~~~~~~~~~  419 (480)
                      .. .....+..++..+..++ .....++...+++.+.+.++.  .++.+..++.  + .+++|. .|.... ..      
T Consensus       239 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~~~~~~rs~~v~~~~-~p~~~~-~~------  308 (361)
T d1m32a_         239 SPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRA--LGFNTLLDDELHSPIITAFY-SPEDPQ-YR------  308 (361)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH--TTCCBSSCGGGBCSSEEEEE-CCCCTT-CC------
T ss_pred             CCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhh--cCCcccCChhhcCCcEEEEE-CCCCCC-CC------
Confidence            11 12333444444433443 445556777788899999988  5666554432  2 334453 332211 10      


Q ss_pred             HhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        420 ILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       420 ~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                           ..++.+.|.++|.+. ..+.... .+++|++ ...++|++||++++++|++++
T Consensus       309 -----~~~~~~~l~~~gi~i-~~G~~~~-~~~~Ris-~~g~~~~~di~~lv~al~~~L  358 (361)
T d1m32a_         309 -----FSEFYRRLKEQGFVI-YPGKVSQ-SDCFRIG-NIGEVYAADITALLTAIRTAM  358 (361)
T ss_dssp             -----HHHHHHHHHHTTEEC-EECCCSS-SCEEEEE-CCSSCCHHHHHHHHHHHHHHC
T ss_pred             -----HHHHHHHHHHCCcEE-ECCCcCC-CCEEEEe-CCCCCCHHHHHHHHHHHHHHc
Confidence                 246778888898543 3222222 5799999 555679999999999999875

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.94  E-value=2.9e-25  Score=216.23  Aligned_cols=325  Identities=11%  Similarity=0.097  Sum_probs=226.0

Q ss_pred             HHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC
Q psy12303         90 GEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG  167 (480)
Q Consensus        90 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g  167 (480)
                      .+.+...+......|....+..++.+.+.+++.+..|.  +++++++|+|+++|+..++.+..+              ||
T Consensus        49 ~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~--------------~g  114 (388)
T d1j32a_          49 VEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIE--------------PG  114 (388)
T ss_dssp             HHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCC--------------TT
T ss_pred             HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHhC--------------CC
Confidence            35565555554456766677788888999999998876  557899999999999999887754              55


Q ss_pred             ceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---
Q psy12303        168 QLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---  242 (480)
Q Consensus       168 ~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---  242 (480)
                      + .|+++.++|+.+...+...|.   .++.++.+.  ++.+|+++|++++++.      ++++++++|+||||.+.+   
T Consensus       115 d-~Vlv~~P~y~~~~~~~~~~~~---~~v~~~~~~~~~~~~d~~~l~~~~~~~------~~~~~~~~P~NPTG~~~~~~~  184 (388)
T d1j32a_         115 D-EVIIPAPFWVSYPEMVKLAEG---TPVILPTTVETQFKVSPEQIRQAITPK------TKLLVFNTPSNPTGMVYTPDE  184 (388)
T ss_dssp             C-EEEEESSCCTHHHHHHHHTTC---EEEEECCCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHH
T ss_pred             C-EEEEcCCCcHHHHHHHHHhcC---eEEEEecccccccCCCHHHHHHhCCCC------CeEEEECCCCCCCCcccchhh
Confidence            6 888999999999999998887   677777653  4689999999988765      889999999999999966   


Q ss_pred             hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCC---CCccceeCccccCCCc-ccceEEEEeCchhhHhhhcC
Q psy12303        243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIE---RADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQM  318 (480)
Q Consensus       243 l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~---~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~  318 (480)
                      +++|.++|+++|+++++|++|+......+.... .....+   .-.+++.|++|.++.| ..+|+++. +...+......
T Consensus       185 ~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s-~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~-~~~~~~~~~~~  262 (388)
T d1j32a_         185 VRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLS-IGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAG-PVPLVKAATKI  262 (388)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCC-GGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEEC-CHHHHHHHHHH
T ss_pred             hhhhhcccccCCeEEEchhhhhcccccCCCCCC-HHHhCcccccceeEecCChhhhhcchhHeEEEEE-CHHHHHHHHHh
Confidence            678888899999999999999876654332221 111110   1235677899998744 77999875 44444332211


Q ss_pred             CcccccccccccCcccCCCCccccCCCCCCchHHHHHHHH--hcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc
Q psy12303        319 SAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA--KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE  396 (480)
Q Consensus       319 ~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~--~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~  396 (480)
                      .. +...                    .......+++...  .+.+.+++..++..+..+.+.+.|++ .+++++ .+|+
T Consensus       263 ~~-~~~~--------------------~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~~-~~p~  319 (388)
T d1j32a_         263 QG-HSTS--------------------NVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNA-MPGLEC-PKPD  319 (388)
T ss_dssp             HH-TTTC--------------------SCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHT-CTTCBC-CCCC
T ss_pred             hh-hccc--------------------cccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-CCCCEe-cCCC
Confidence            10 0000                    0112222222222  25677888889999999999999999 889887 4677


Q ss_pred             eeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        397 MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       397 ~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                      .+.++|.-.+....  +           ..++.++|.+ .|+.+++...+ +..+++|+++.   ++++++++.+++|++
T Consensus       320 gg~~l~~~l~~~~~--~-----------~~~~~~~ll~~~gV~v~pG~~F-~~~~~~Rls~~---~~~e~l~~al~rl~~  382 (388)
T d1j32a_         320 GAFYMFPSIAKTGR--S-----------SLDFCSELLDQHQVATVPGAAF-GADDCIRLSYA---TDLDTIKRGMERLEK  382 (388)
T ss_dssp             BTTEECCBCGGGTC--C-----------HHHHHHHHHHHHCEECEEGGGG-TCTTBEEEECC---SCHHHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCC--C-----------HHHHHHHHHHhCCEEEEecccc-CCCCeEEEEEe---CCHHHHHHHHHHHHH
Confidence            77777643332211  1           1245555554 46444443333 33689999943   578999999999999


Q ss_pred             hhccC
Q psy12303        476 LGHDL  480 (480)
Q Consensus       476 ~~~~l  480 (480)
                      +++.|
T Consensus       383 ~l~~l  387 (388)
T d1j32a_         383 FLHGI  387 (388)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88753

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.93  E-value=1.4e-24  Score=210.85  Aligned_cols=326  Identities=14%  Similarity=0.146  Sum_probs=211.3

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCC-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH
Q psy12303        107 APVFILMETVVLEKMRQIIGWQG-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA  185 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~  185 (480)
                      ++.+.++.+++++.+++++|+++ ..++|++|||+++..++.....              +++ .+++....|++.....
T Consensus        46 ~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~~~~~  110 (377)
T d1vjoa_          46 DPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVE--------------PGD-VVLIGVAGYFGNRLVD  110 (377)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC--------------TTC-EEEEEESSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhccc--------------ccc-ccceeeechhhhhhhh
Confidence            66778888999999999999965 4677788899999988877644              234 4555555766644333


Q ss_pred             HHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccc
Q psy12303        186 AVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGG  265 (480)
Q Consensus       186 ~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~  265 (480)
                      .....+. ....+....+...+.+..+....+.     .+.+|++++.+|.+|.+.|+++|.++||++|+.+++|++++.
T Consensus       111 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~  184 (377)
T d1vjoa_         111 MAGRYGA-DVRTISKPWGEVFSLEELRTALETH-----RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSL  184 (377)
T ss_dssp             HHHHTTC-EEEEEECCTTCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTT
T ss_pred             hhhhhcc-cccccccCCCCcccchhhhhhhhcC-----cceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhh
Confidence            2222221 4445555445555666665555443     278999999999999999999999999999999999999999


Q ss_pred             cccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccc-ccccCcccCCCCccccCC
Q psy12303        266 GLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQ-DKLYDVRYDTGDKVIQCG  344 (480)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~  344 (480)
                      +..+.+...+       ++|+++++.|||+++|.++|++++++. .++........+.... ..................
T Consensus       185 g~~~~~~~~~-------~~d~~~~s~~K~~~gp~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (377)
T d1vjoa_         185 GGVPIFLDAW-------GVDLAYSCSQKGLGCSPGASPFTMSSR-AIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHT  256 (377)
T ss_dssp             TTSCCCTTTT-------TCSEEECCSSSTTCSCSSCEEEEECHH-HHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSC
T ss_pred             hhhhhccccc-------ccceeeecccccccCCCEEEEecchhh-HHhhhhccCCCCcceeeccchhhhccCcccccccc
Confidence            9988887777       899999999999999999999887654 3333222221111100 000000000011111111


Q ss_pred             CCCCc-hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc---eeEEEEEeecCccCCCchhhHHHH
Q psy12303        345 RHNDI-FKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE---MVNVSFWYLPTRVRNMPHEKRLNI  420 (480)
Q Consensus       345 r~~~~-l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~  420 (480)
                      ..... ..+..........+.+...++..++++++.+.+.+  .++.++.++.   .++++|.. |..+.          
T Consensus       257 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~rs~~v~~~~~-p~~~~----------  323 (377)
T d1vjoa_         257 APINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLED--IGLSLHVEKEYRLPTLTTVCI-PDGVD----------  323 (377)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--TTCCBSSCGGGBCSSEEEEEC-CTTCC----------
T ss_pred             cceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhc--cCceeecChHhcCCeEEEEEC-CCCCC----------
Confidence            11111 11222233345667788888999999999999998  5766654432   23455543 33221          


Q ss_pred             hhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        421 LGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       421 l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                          ..++.+.|.++..+.+..+...-..++||++.+++++|+|||++++++|+++++
T Consensus       324 ----~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~  377 (377)
T d1vjoa_         324 ----GKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR  377 (377)
T ss_dssp             ----HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             ----HHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence                245666665553354443221111468999855788899999999999999874

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.92  E-value=7.1e-24  Score=206.61  Aligned_cols=325  Identities=15%  Similarity=0.102  Sum_probs=211.3

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCCC-eEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH-
Q psy12303        107 APVFILMETVVLEKMRQIIGWQGGD-SILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC-  184 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~~~-~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~-  184 (480)
                      ++-+.++.+++++.+++++|.++.. ++|+.|||.++..++..+..              +|+ .+++....|++.... 
T Consensus        45 ~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~--------------~~~-~vl~~~~g~~~~~~~~  109 (388)
T d2ch1a1          45 HAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLE--------------EGD-RVLIAVNGIWAERAVE  109 (388)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC--------------TTC-EEEEEESSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhcc--------------ccc-cccccccccccccchh
Confidence            5677788889999999999997655 55678899999988877754              234 555555677665444 


Q ss_pred             -HHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccc
Q psy12303        185 -AAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       185 -~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                       +...+.   ..+.++..+....+.+..++++...     .++++++++.+|.+|...|+++|.++||++|++++||+++
T Consensus       110 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~s  181 (388)
T d2ch1a1         110 MSERYGA---DVRTIEGPPDRPFSLETLARAIELH-----QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVA  181 (388)
T ss_dssp             HHHHTTC---EEEEEECCTTSCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTT
T ss_pred             hhhhhcc---cccccccccccccchhhhhhhhccC-----Ccceeeeeecccccccccchhhhcchhccccceeeeeeee
Confidence             344444   5666777666677888777776554     2789999999999999999999999999999999999999


Q ss_pred             cccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccccc--ccCcccCC--CCc
Q psy12303        264 GGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDK--LYDVRYDT--GDK  339 (480)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~--~~~  339 (480)
                      +.+..+.+...+       ++|+++++.|||+++|.|+|+++++...+ ........+.......  .....+..  ...
T Consensus       182 s~g~~pid~~~~-------~~d~~~~s~~K~~~gp~G~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (388)
T d2ch1a1         182 SLCGVPFYMDKW-------EIDAVYTGAQKVLGAPPGITPISISPKAL-DVIRNRRTKSKVFYWDLLLLGNYWGCYDEPK  253 (388)
T ss_dssp             TBTTBCCCTTTT-------TCCEEECCCC-CCCCCSSCEEEEECHHHH-HHHHTCSSCCSCGGGCHHHHHHHTTCSSSCC
T ss_pred             cccccccchhcc-------CceEEEEccccccCCCCeEEEEeccHHHH-HhhhcccCccccccccchhhhhhhccccccc
Confidence            999999888777       99999999999999999999999876543 2222111111100000  00000000  000


Q ss_pred             cccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe-cCC---ceeEEEEEeecCccCCCch
Q psy12303        340 VIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI-LEP---EMVNVSFWYLPTRVRNMPH  414 (480)
Q Consensus       340 ~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~-~~~---~~~~v~f~~~~~~~~~~~~  414 (480)
                      ....+-.. ....+...++.+...+.....++...+..++...+..  .++... .++   ...+++|.+. ..+.    
T Consensus       254 ~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~rs~~v~~~~~p-~g~~----  326 (388)
T d2ch1a1         254 RYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGK--MGLDIFVKDPRHRLPTVTGIMIP-KGVD----  326 (388)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--HTCCBSSCSGGGBCTTEEEEECC-TTCC----
T ss_pred             ccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh--cccccccCCHHHhCCeEEEEECC-CCCC----
Confidence            00000001 2223344445555566677777777777777777766  333332 222   1235566543 2221    


Q ss_pred             hhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        415 EKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       415 ~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                                ..++...|.++..+.+..+......+.||++.++..+|+|||++++++|+++++.
T Consensus       327 ----------~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~  381 (388)
T d2ch1a1         327 ----------WWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKA  381 (388)
T ss_dssp             ----------HHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHh
Confidence                      2355666655533433332211114689999557788999999999999998763

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=6.3e-24  Score=206.35  Aligned_cols=304  Identities=16%  Similarity=0.151  Sum_probs=215.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC
Q psy12303        112 LMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG  191 (480)
Q Consensus       112 ~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~  191 (480)
                      .+..++.+.+++++|.+.  ++++++|++||..++.++..              +++ .|++....|.|+..++...+. 
T Consensus        90 ~~~~~lE~~lA~~~g~e~--al~~~SG~~An~~~i~~l~~--------------~~d-~i~~d~~~h~s~~~G~~~~~a-  151 (401)
T d1fc4a_          90 DSHKELEQKLAAFLGMED--AILYSSCFDANGGLFETLLG--------------AED-AIISDALNHASIIDGVRLCKA-  151 (401)
T ss_dssp             HHHHHHHHHHHHHHTCSE--EEEESCHHHHHHTTHHHHCC--------------TTC-EEEEETTCCHHHHHHHHTSCS-
T ss_pred             HHHHHHHHHHHHhhcCCc--eEEecchhhhhHHHHHHhcC--------------CCc-EEEeCCcchHHHHccccccCc-
Confidence            444556667899999876  89999999999999987754              334 899999999999999988776 


Q ss_pred             CCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccc
Q psy12303        192 TDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSK  271 (480)
Q Consensus       192 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~  271 (480)
                        ++..++.+     |.+++++++++..+.+....+|++....++.|.+.||++|.++|++||+++++|++|+++.+...
T Consensus       152 --~~~~~~~~-----d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~  224 (401)
T d1fc4a_         152 --KRYRYANN-----DMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGEN  224 (401)
T ss_dssp             --EEEEECTT-----CHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTT
T ss_pred             --eEEEEcCC-----ChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCC
Confidence              66666654     89999999988877777788999999988999999999999999999999999999999876432


Q ss_pred             ccc-CcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCch
Q psy12303        272 KYR-HPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIF  350 (480)
Q Consensus       272 ~~~-~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l  350 (480)
                      ... .........+|+++.++.|.++++.  |.++..+.+..........+|.+.....                +..+.
T Consensus       225 G~G~~~~~~~~~~~dii~~tl~Ka~gg~~--Gg~v~g~~~~~~~l~~~~~~~~~s~~l~----------------p~~~~  286 (401)
T d1fc4a_         225 GRGSHEYCDVMGRVDIITGTLGKALGGAS--GGYTAARKEVVEWLRQRSRPYLFSNSLA----------------PAIVA  286 (401)
T ss_dssp             SCCHHHHTTCTTCCSEEEEESSSTTCSSS--CEEEEECHHHHHHHHHHCHHHHHSCCCC----------------HHHHH
T ss_pred             CCccchhccCCCCCeEEEeecccccccCC--cccccCCHHHHHHHHcCChhhhhcCCCC----------------HHHHH
Confidence            111 0011223468999999999997533  4445566666655443444454332110                01122


Q ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHH
Q psy12303        351 KLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKG  430 (480)
Q Consensus       351 ~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~  430 (480)
                      ++..+++.  ....+++.++..++.++|++.+.+  .++.+. .....++.+... ..       .       ...++.+
T Consensus       287 aa~~~l~~--~~~~~~~~~~l~~~~~~~~~~l~~--~g~~~~-~~~~pIv~v~~~-~~-------~-------~a~~~~~  346 (401)
T d1fc4a_         287 ASIKVLEM--VEAGSELRDRLWANARQFREQMSA--AGFTLA-GADHAIIPVMLG-DA-------V-------VAQKFAR  346 (401)
T ss_dssp             HHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHHH--TTCCBC-CSSSSEEEEEEE-CH-------H-------HHHHHHH
T ss_pred             HHHhhhcc--cccCHHHHHHHHHHHHHHHhhhcc--cCCccC-CCCCCEEEEEEC-CH-------H-------HHHHHHH
Confidence            22233332  223467788999999999999998  577664 344444433221 11       0       1245778


Q ss_pred             HHHhcccEEEe---eeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        431 RMMQAGTMMVG---YQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       431 ~l~~~g~~~~~---~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      .|.++|+++..   |+...+ ...+|++ ++..+|++|||+++++|+++.+++
T Consensus       347 ~L~~~Gi~v~~i~~PtVp~g-~~~lRi~-~~a~hT~edId~~v~al~ev~~~l  397 (401)
T d1fc4a_         347 ELQKEGIYVTGFFYPVVPKG-QARIRTQ-MSAAHTPEQITRAVEAFTRIGKQL  397 (401)
T ss_dssp             HHHHTTEECCEECTTSSCTT-CEEEEEE-CCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCceEEeECCCCCCCC-CceEEEE-ECCCCCHHHHHHHHHHHHHHHHHh
Confidence            89999854322   122233 4679999 899999999999999999998764

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=4.7e-24  Score=207.32  Aligned_cols=324  Identities=13%  Similarity=0.071  Sum_probs=219.7

Q ss_pred             HHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccC
Q psy12303         89 AGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIK  166 (480)
Q Consensus        89 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~  166 (480)
                      +.+.+...+......|....+..++.+++.+++.+..|.  +++++++|+|+++|+..++.+..+              |
T Consensus        49 i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~--------------~  114 (382)
T d1b5pa_          49 VKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILD--------------P  114 (382)
T ss_dssp             HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCC--------------T
T ss_pred             HHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhCC--------------C
Confidence            335565555555566777777788999999999888775  568899999999999999888764              5


Q ss_pred             CceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC--
Q psy12303        167 GQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP--  242 (480)
Q Consensus       167 g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~--  242 (480)
                      |+ .|++..++|+.+...++..|.   +++.+|.++  ++.+|++++++++++.      ++++++++|+||||.+.+  
T Consensus       115 gd-~vl~~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~P~NPTG~~~s~~  184 (382)
T d1b5pa_         115 GD-EVIVLSPYWVSYPEMVRFAGG---VVVEVETLPEEGFVPDPERVRRAITPR------TKALVVNSPNNPTGAVYPKE  184 (382)
T ss_dssp             TC-EEEEEESCCTHHHHHHHHTTC---EEEEEECCGGGTTCCCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHH
T ss_pred             CC-EEEECCCCcHHHHHHHHHhcC---eEEEEecccccccCCCHHHHHHhCCCC------CeEEEECCCCCCcchhCCHH
Confidence            56 788888999999999999998   788888764  4688999999988665      889999999999999965  


Q ss_pred             -hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCc
Q psy12303        243 -IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSA  320 (480)
Q Consensus       243 -l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~  320 (480)
                       +++|.++|++||++++.|++|+...+......  .......-.++..|++|.++.| ..+|+++. +.+.++.......
T Consensus       185 ~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~--~~~~~~~~~i~~~s~SK~~~~~GlR~G~~~~-~~~~i~~~~~~~~  261 (382)
T d1b5pa_         185 VLEALARLAVEHDFYLVSDEIYEHLLYEGEHFS--PGRVAPEHTLTVNGAAKAFAMTGWRIGYACG-PKEVIKAMASVSR  261 (382)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCC--GGGTCTTTEEEEEESTTTTTCGGGCCEEEEC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCeEEEEEccccceecCCCCCC--HHHcCCCCEEEEecchhhccCcHhheEEEEE-CHHHHHHHHHHHH
Confidence             78899999999999999999997665332211  1111223345667899999855 78999886 4444433221110


Q ss_pred             ccccccccccCcccCCCCccccCCCCCCchHHHHHHH--HhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCcee
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWR--AKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMV  398 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~--~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~  398 (480)
                      .....                  ........+...+.  ......+....+......+.+.+.+.+  .|+++ .+|+.+
T Consensus       262 ~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~-~~p~gg  320 (382)
T d1b5pa_         262 QSTTS------------------PDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTA--LGLKA-VRPSGA  320 (382)
T ss_dssp             TTTCS------------------CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCCB-CCCSBT
T ss_pred             hcccC------------------cccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhh--cCCeE-ecCCce
Confidence            00000                  00001111111121  112334455556666677788888888  57776 467777


Q ss_pred             EEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        399 NVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       399 ~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      .++|.-.++...  +           ...+.+.|.+.|+++.+...+.+ .+++|+++   .+++++|++.+++|++++
T Consensus       321 ~~~~~~~~~~~~--~-----------~~~~~~~l~e~gV~v~PG~~F~~-~~~iRis~---~~~~e~l~~al~rl~~~L  382 (382)
T d1b5pa_         321 FYVLMDTSPIAP--D-----------EVRAAERLLEAGVAVVPGTDFAA-FGHVRLSY---ATSEENLRKALERFARVL  382 (382)
T ss_dssp             TEEEEECTTTCS--S-----------HHHHHHHHHHTTEECEESGGGTC-TTEEEEEC---CSCHHHHHHHHHHGGGGC
T ss_pred             EEEeEeCCCCCC--C-----------HHHHHHHHHHCCEEEEeCcccCC-CCeEEEEE---cCCHHHHHHHHHHHHHhC
Confidence            776643322110  0           23456778888865554434434 68999994   347899999999888763

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.4e-24  Score=208.46  Aligned_cols=325  Identities=13%  Similarity=0.078  Sum_probs=216.6

Q ss_pred             ChhhHHHHHHHHHHHHHHhCC----CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHH
Q psy12303        107 APVFILMETVVLEKMRQIIGW----QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVR  182 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~----~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~  182 (480)
                      ++.+.++..++.+.++++++.    +...++||+|||+|+..++..+....           .||+ .|++....|++..
T Consensus        31 ~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~-----------~~gd-~vlv~~~~~~~~~   98 (382)
T d2bkwa1          31 SPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSK-----------APNK-NVLVVSTGTFSDR   98 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTT-----------CSCC-EEEEECSSHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhc-----------CCCC-ceEEEEechhhhh
Confidence            456677777888888898885    34568999999999999988764321           1556 6666777777754


Q ss_pred             HH--HHHcCCCCCCeEEeeC-CCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcC--cEE
Q psy12303        183 SC--AAVCGLGTDNCVEVPS-DKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYN--MWL  257 (480)
Q Consensus       183 ~~--~~~~g~~~~~v~~v~~-~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~--~~l  257 (480)
                      ..  +...|.   .+..+.. +.....+.+.+++++.+.     +++++++++.+|.+|...|++++.++|++++  +++
T Consensus        99 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~  170 (382)
T d2bkwa1          99 FADCLRSYGA---QVDVVRPLKIGESVPLELITEKLSQN-----SYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFF  170 (382)
T ss_dssp             HHHHHHHTTC---EEEEECCSSTTSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEE
T ss_pred             hhhhcccccc---ccccccccCCCCccchhHHHHHhhhc-----cchheeeeeccccccccccchhhhhhccccccceee
Confidence            33  344454   4444443 334567888888887653     2789999999999999999999999998875  999


Q ss_pred             EeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhh----hcCCcccccccccccCc-
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISC----NQMSAEYLFMQDKLYDV-  332 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~-  332 (480)
                      |||++++.+..+++...+       ++|++++++|||+++|.|+|+++++++......    ......|.......... 
T Consensus       171 ~vDa~qs~g~~pid~~~~-------giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (382)
T d2bkwa1         171 VVDAVCSIGCEEFEFDEW-------GVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIM  243 (382)
T ss_dssp             EEECTTTTTTSCCCTTTT-------TCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHH
T ss_pred             eeeccccccccccccccc-------CeeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhh
Confidence            999999999999998888       999999999999999999999999876432210    11111221110000000 


Q ss_pred             -ccCCCCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC--C---ceeEEEEEee
Q psy12303        333 -RYDTGDKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE--P---EMVNVSFWYL  405 (480)
Q Consensus       333 -~~~~~~~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~--~---~~~~v~f~~~  405 (480)
                       ...........+-.. ...++..+++.+..+|++...++..++++++++.+.+ .+++..+..  +   ...+++|.. 
T Consensus       244 ~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~s~~v~~~~~-  321 (382)
T d2bkwa1         244 ENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVN-GLQLTSVSRYPSNMSAHGLTAVYV-  321 (382)
T ss_dssp             HHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-TTCCEESSCSSSTTBCSSCEEEEC-
T ss_pred             hcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhh-cccccccccCchhccCCcEEEEcC-
Confidence             000000000111111 2344555677777788888889999999999999988 777776542  1   123344533 


Q ss_pred             cCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCC-cccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        406 PTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLND-LPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       406 ~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~-~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      +.                 ..++.+.|.+.|+ .+..+.... ..+++|++.+.+.++++||+++++.|+.+.+
T Consensus       322 ~~-----------------~~~~~~~L~~~gi-~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~  377 (382)
T d2bkwa1         322 AD-----------------PPDVIAFLKSHGV-VIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKL  377 (382)
T ss_dssp             SC-----------------HHHHHHHHHHTTE-ECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHH
T ss_pred             CC-----------------HHHHHHHHHHCCe-EEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH
Confidence            21                 1345667777774 344322211 1578999966677788888888888776544

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.92  E-value=2.2e-23  Score=203.06  Aligned_cols=327  Identities=13%  Similarity=0.107  Sum_probs=216.4

Q ss_pred             hHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC---CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCc
Q psy12303         88 MAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW---QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSA  164 (480)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~---~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~  164 (480)
                      .+.+.+...++.....|....+..++.+++.+++.+..+.   ++.++++|+|+++++..++.+..+             
T Consensus        42 ~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~~-------------  108 (388)
T d1gdea_          42 HIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLK-------------  108 (388)
T ss_dssp             HHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCC-------------
T ss_pred             HHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHhcC-------------
Confidence            3445566555544455766667788888888888876664   456799999999999888876654             


Q ss_pred             cCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC
Q psy12303        165 IKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP  242 (480)
Q Consensus       165 ~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~  242 (480)
                       ||+ .|++..++|+.+...+..+|.   +++.+|.++  ++.+|+++|++++++.      ++++++++|+||||.+.+
T Consensus       109 -~gd-~vlv~~P~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~P~NPtG~~~s  177 (388)
T d1gdea_         109 -DGE-EVLIPTPAFVSYAPAVILAGG---KPVEVPTYEEDEFRLNVDELKKYVTDK------TRALIINSPCNPTGAVLT  177 (388)
T ss_dssp             -TTC-EEEEEESCCTTHHHHHHHHTC---EEEEEECCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCC
T ss_pred             -CCC-EEEECCCCcHHHHHHHHHcCC---EEEEeecccccCCCCCHHHHHHhCccC------CeEEEECCCcCCCCCcCC
Confidence             556 788889999999999999998   888999864  5689999999988765      899999999999999965


Q ss_pred             ---hHHHHHHHHHcCcEEEeeccccccccccccccC-cccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhc
Q psy12303        243 ---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH-PRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQ  317 (480)
Q Consensus       243 ---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~  317 (480)
                         +++|.++|++|++++++|++|+........... ..+.+...-.+++.|++|.++.| ..+|+++..+. .......
T Consensus       178 ~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~~~~-~~~~~~~  256 (388)
T d1gdea_         178 KKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSW-IIERMVK  256 (388)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEeecc-chhhhhh
Confidence               788889999999999999999876543222111 01111112236677999998744 78999886543 3332211


Q ss_pred             CCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhc----HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        318 MSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG----DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       318 ~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g----~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                      ........                     ............+.    .+.+....++..+....+.+.|.+  .++.. .
T Consensus       257 ~~~~~~~~---------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~-~  312 (388)
T d1gdea_         257 FQMYNATC---------------------PVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNE--MGLPT-V  312 (388)
T ss_dssp             HHHTTTCS---------------------CCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCC-C
T ss_pred             cccccccc---------------------ccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhh--ccccc-c
Confidence            11000000                     11112222222221    233455566667778888888887  46665 3


Q ss_pred             CCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCc--ccEEEEecccCCCCHHHHHHHHH
Q psy12303        394 EPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDL--PNFFRNIISSAAVTEGDIDFLLT  471 (480)
Q Consensus       394 ~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~--~~~~R~~~~~~~~t~~di~~~~~  471 (480)
                      .|+.+.++|.-.+..  +.+           ..++.+++.++..+.+.++...+.  .+++|+++.   ++++++++.++
T Consensus       313 ~p~gg~fl~~~l~~~--~~~-----------~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~---~~~e~l~~al~  376 (388)
T d1gdea_         313 KPKGAFYIFPRIRDT--GLT-----------SKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA---TAYEKLEEAMD  376 (388)
T ss_dssp             CCCBTTEECCBCGGG--TCC-----------HHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC---SCHHHHHHHHH
T ss_pred             CCCceEEEEEECCCC--CCC-----------HHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEec---CCHHHHHHHHH
Confidence            577776665333221  111           234556655543344444332221  579999943   47899999999


Q ss_pred             HHHHhhcc
Q psy12303        472 EMDRLGHD  479 (480)
Q Consensus       472 ~l~~~~~~  479 (480)
                      +|++++++
T Consensus       377 rL~~~l~e  384 (388)
T d1gdea_         377 RMERVLKE  384 (388)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998875

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=7.9e-24  Score=201.89  Aligned_cols=329  Identities=17%  Similarity=0.143  Sum_probs=209.6

Q ss_pred             cCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHh
Q psy12303         80 SCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKE  159 (480)
Q Consensus        80 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~  159 (480)
                      +++.+| .++. .+..........|..+    ...+++++++++++|.+. .++||+|||+||..++.+++..       
T Consensus        12 ~~g~~P-~v~~-A~~~a~~~~~~~~~~~----~~~~~l~~~la~~~g~~~-~v~f~~sGt~An~~a~~~~~~~-------   77 (345)
T d1v72a1          12 IAGASP-EVAQ-ALVKHSSGQAGPYGTD----ELTAQVKRKFCEIFERDV-EVFLVPTGTAANALCLSAMTPP-------   77 (345)
T ss_dssp             GCCCCH-HHHH-HHHHTTSSCCCSTTCS----HHHHHHHHHHHHHHTSCC-EEEEESCHHHHHHHHHHTSCCT-------
T ss_pred             CCCCCH-HHHH-HHHHHhccCccccCCC----HHHHHHHHHHHHHHCCCc-EEEECCchHHHHHHHHHHHHhc-------
Confidence            444444 4553 4444333333444433    455677888999999864 6889999999999999877542       


Q ss_pred             cCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCcc--EEEEeccCCCcc
Q psy12303        160 KGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIP--FFVNCTSGTTVL  237 (480)
Q Consensus       160 ~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~--~~v~~~~~~~~~  237 (480)
                              ...+++....|+++...+...+.....+..++.+.++.++++.+++.+.+.......+  .++..+.. +..
T Consensus        78 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~  148 (345)
T d1v72a1          78 --------WGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQA-TEV  148 (345)
T ss_dssp             --------TEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESS-CTT
T ss_pred             --------CCccccccccceeeechhhHHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeecc-ccc
Confidence                    2367778888998877665554444367777777788999999999987654332223  33343333 334


Q ss_pred             cc---ccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHh
Q psy12303        238 GA---FDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLIS  314 (480)
Q Consensus       238 G~---~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~  314 (480)
                      |.   +++++++.++|++||+++|+|++++++..................+.++...+|.+  +...+.+..........
T Consensus       149 ~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  226 (345)
T d1v72a1         149 GSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNG--VLAAEAIVLFNTSLATE  226 (345)
T ss_dssp             SCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGT--CSSCEEEEESSGGGHHH
T ss_pred             cccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccc--cccccccccchhhhhhh
Confidence            43   35688899999999999999999998766444332201111113344454444444  33444444444433221


Q ss_pred             hhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC
Q psy12303        315 CNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE  394 (480)
Q Consensus       315 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~  394 (480)
                      ....   +...                ..+.......++.....+......+...+...+..++.+.+.+ .+++.+..+
T Consensus       227 ~~~~---~~~~----------------~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~~~~p  286 (345)
T d1v72a1         227 MSYR---RKRA----------------GHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEG-LGGVEVLGG  286 (345)
T ss_dssp             HHHH---HHHT----------------TCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTT-CTTEEEESC
T ss_pred             cccc---cccc----------------ccccchhhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHh-cCCcEeccC
Confidence            1100   0000                0111123445555566666667777888888999999999999 899999766


Q ss_pred             CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        395 PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       395 ~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                      +..+++++. .+                   .++.++|.++|..+ .. ...+ .+.+|++ ++..+|+||||++++.|+
T Consensus       287 ~~~niv~~~-~~-------------------~~~~~~L~~~gi~v-~~-~~~~-~~~lR~~-~~~~~T~edid~~le~lr  342 (345)
T d1v72a1         287 TEANILFCR-LD-------------------SAMIDALLKAGFGF-YH-DRWG-PNVVRFV-TSFATTAEDVDHLLNQVR  342 (345)
T ss_dssp             CCSSEEEEE-EC-------------------HHHHHHHHHTTCBC-BC-SSSS-TTEEEEE-CCTTCCHHHHHHHHHHHH
T ss_pred             CCccEEEEE-cC-------------------HHHHHHHHHcCCCc-cc-cCCC-CCEEEEE-CCCCCCHHHHHHHHHHHH
Confidence            666655543 21                   24557788888543 22 2223 5799999 899999999999999999


Q ss_pred             Hhh
Q psy12303        475 RLG  477 (480)
Q Consensus       475 ~~~  477 (480)
                      +.+
T Consensus       343 ~aa  345 (345)
T d1v72a1         343 LAA  345 (345)
T ss_dssp             HTC
T ss_pred             HhC
Confidence            763

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.92  E-value=4.1e-23  Score=203.46  Aligned_cols=327  Identities=11%  Similarity=0.076  Sum_probs=217.3

Q ss_pred             hhcChhhHHHHHHHHHHHHHHhCC----CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCch
Q psy12303        104 YEIAPVFILMETVVLEKMRQIIGW----QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHY  179 (480)
Q Consensus       104 ~~~~~~~~~~e~~~~~~la~~~g~----~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~  179 (480)
                      |....+..++.+++.+++.+.+|.    +++++++|+|+++++..++.+..+              ||+ .|+++.++|+
T Consensus        79 Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~--------------~Gd-~Vlv~~P~y~  143 (428)
T d1iaya_          79 FQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLAD--------------PGD-AFLVPSPYYP  143 (428)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCC--------------TTC-EEEEESSCCT
T ss_pred             CcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCC--------------CCC-EEEEccCCch
Confidence            444445678888999999998874    467899999999999999887754              556 7888889999


Q ss_pred             hHHHHHHHc-CCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHc
Q psy12303        180 SVRSCAAVC-GLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKY  253 (480)
Q Consensus       180 s~~~~~~~~-g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~  253 (480)
                      ++...+... |+   +++.++++.  ++.+|+++++++++.....+.++++|++++|+||||.+.+   +++|.++|++|
T Consensus       144 ~~~~~~~~~~g~---~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~  220 (428)
T d1iaya_         144 AFNRDLRWRTGV---QLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQH  220 (428)
T ss_dssp             THHHHTTTTTCC---EEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCC---eEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccC
Confidence            888877654 55   788888764  5789999999999888888888999999999999999866   78899999999


Q ss_pred             CcEEEeeccccccccccccccC----c----ccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCccccc
Q psy12303        254 NMWLHVDAAWGGGLLLSKKYRH----P----RLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLF  324 (480)
Q Consensus       254 ~~~l~vD~a~~~~~~~~~~~~~----~----~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~  324 (480)
                      |+++++|++|+...+..+.+..    +    .......-.+++.+++|.++.| ..+|+++..++...............
T Consensus       221 ~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~~~~~  300 (428)
T d1iaya_         221 NIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLV  300 (428)
T ss_dssp             TCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTSCC
T ss_pred             cEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhhccccc
Confidence            9999999999876553222111    0    0000001235677999987654 68999887666554432211000000


Q ss_pred             ccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEe
Q psy12303        325 MQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWY  404 (480)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~  404 (480)
                      ..                  ....++.+.........+.+++..++..+..+.+.+.|+.  +|+++. +|+.+.++|.-
T Consensus       301 ~~------------------~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~--~gi~~~-~p~gg~f~w~~  359 (428)
T d1iaya_         301 ST------------------QTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEV--VGIKCL-KNNAGLFCWMD  359 (428)
T ss_dssp             CH------------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCBC-CCSSSSEEEEE
T ss_pred             cc------------------ccccchhhhhhhhccccccccccccccchhHHHHHHHHHh--CCCEEe-cCCcceEEEEE
Confidence            00                  0000111111111112344566667777788889999988  799874 67777777754


Q ss_pred             ecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCC--cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        405 LPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLND--LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       405 ~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~--~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .+..+...   ....     ..++.++|.++..+++.++...+  ..+++|+++.  ..++++|+..+++|++++..
T Consensus       360 l~~~~~~~---~~~~-----~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a--~~~~~~l~~al~Rl~~~l~~  426 (428)
T d1iaya_         360 LRPLLRES---TFDS-----EMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA--NMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             CGGGCSSS---SHHH-----HHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS--SSCHHHHHHHHHHHHHHHHT
T ss_pred             CccccccC---CCCC-----HHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeC--CCCHHHHHHHHHHHHHHHhh
Confidence            44332211   1111     12456777665335554433322  1689999953  34678899999999997753

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.91  E-value=3.2e-23  Score=204.49  Aligned_cols=326  Identities=12%  Similarity=0.120  Sum_probs=217.7

Q ss_pred             hhcChhhHHHHHHHHHHHHHHhCC----CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCch
Q psy12303        104 YEIAPVFILMETVVLEKMRQIIGW----QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHY  179 (480)
Q Consensus       104 ~~~~~~~~~~e~~~~~~la~~~g~----~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~  179 (480)
                      |....+..++.+++.+++.+.+|.    +++++++|+|+|+++..++.+..+              ||+ .|+++.+.|+
T Consensus        80 Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~--------------pGd-~Vlv~~P~y~  144 (431)
T d1m7ya_          80 FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLAD--------------PGE-AVLIPTPYYP  144 (431)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCC--------------TTC-EEEEEESCCT
T ss_pred             CcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcC--------------CCC-EEEEeCCCch
Confidence            444445568888899999998873    467899999999999999988754              666 7888888998


Q ss_pred             hHHHHHHHc-CCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHc
Q psy12303        180 SVRSCAAVC-GLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKY  253 (480)
Q Consensus       180 s~~~~~~~~-g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~  253 (480)
                      .+...+... |+   +++.++.++  ++.+|++++++++++....+.+++++++++|+||||.+.+   +++|.++|++|
T Consensus       145 ~~~~~~~~~~g~---~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~  221 (431)
T d1m7ya_         145 GFDRDLKWRTGV---EIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDK  221 (431)
T ss_dssp             THHHHTTTTTCC---EEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhcCc---eeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCcccccccccccccccccccccccc
Confidence            888887654 45   778888765  4689999999999998888888999999999999999966   78889999999


Q ss_pred             CcEEEeeccccccccccccccCc--ccCC------CC--CCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCccc
Q psy12303        254 NMWLHVDAAWGGGLLLSKKYRHP--RLTG------IE--RADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEY  322 (480)
Q Consensus       254 ~~~l~vD~a~~~~~~~~~~~~~~--~~~~------~~--~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~  322 (480)
                      |+++++|++|+...+..+.+...  ....      ..  .--+++.+++|.++.| ..+|+++..+........ ....+
T Consensus       222 ~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~-~~~~~  300 (431)
T d1m7ya_         222 GIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT-KMSSF  300 (431)
T ss_dssp             TCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHH-HHGGG
T ss_pred             CcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHH-HHhcc
Confidence            99999999998765532211110  0000      00  1125566899999855 678998876543322211 11111


Q ss_pred             ccccccccCcccCCCCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEE
Q psy12303        323 LFMQDKLYDVRYDTGDKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVS  401 (480)
Q Consensus       323 l~~~~~~~~~~~~~~~~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~  401 (480)
                      ...                  +... .++.+.........+.+.+..++..+..+.+.+.|++  +|+++. +|+.+.++
T Consensus       301 ~~~------------------~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~gi~~~-~p~gg~f~  359 (431)
T d1m7ya_         301 GLV------------------SSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK--SGISCL-NGNAGLFC  359 (431)
T ss_dssp             SCC------------------CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TTCEEC-CCCSSSEE
T ss_pred             ccc------------------cccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhc--CCcEEe-cCCceeEE
Confidence            000                  0000 1111111112223445677777778888899999988  899985 67777777


Q ss_pred             EEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCC--cccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        402 FWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLND--LPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       402 f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~--~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      |.-.+.......   ...     ..++.++|.++..+++.++...+  ..+++|+++.  ..++++++..+++|++++++
T Consensus       360 w~~l~~~~~~~~---~~~-----~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a--~~~e~~l~~al~rL~~~l~~  429 (431)
T d1m7ya_         360 WVDMRHLLRSNT---FEA-----EMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFA--NLPERTLDLAMQRLKAFVGE  429 (431)
T ss_dssp             EEECGGGSSSSS---HHH-----HHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECS--SSCHHHHHHHHHHHHHHHHH
T ss_pred             EEECccccccCc---ccC-----HHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeC--cCCHHHHHHHHHHHHHHHHH
Confidence            654443322111   101     13456666655335444433222  1579999953  24678999999999998764

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.8e-23  Score=201.97  Aligned_cols=298  Identities=16%  Similarity=0.128  Sum_probs=207.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      ..+..++.+.+++++|.+.  ++++++|+.||..++.+...              +++ .|++....|.++..+++..+.
T Consensus        82 ~~~~~~lE~~LA~~~g~e~--al~~~SG~~an~~~i~al~~--------------~~d-~v~~d~~~h~si~~g~~~~~~  144 (383)
T d1bs0a_          82 SVVHQALEEELAEWLGYSR--ALLFISGFAANQAVIAAMMA--------------KED-RIAADRLSHASLLEAASLSPS  144 (383)
T ss_dssp             CHHHHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHCC--------------TTC-EEEEETTCCHHHHHHHHTSSS
T ss_pred             chHHHHHHHHHHHhcCCCc--eEEecccchhhHHHHHhhcC--------------CCc-eEEeeccccHHHhhccccCCC
Confidence            4555566667999999875  89999999999999988764              334 899999999999999988776


Q ss_pred             CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccccc
Q psy12303        191 GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLS  270 (480)
Q Consensus       191 ~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~  270 (480)
                         +++.++.+     |+++|++.+.+.   .....+|+++...+++|.+.|+++|.++|++||++++||+||+.+.+..
T Consensus       145 ---~~~~~~hn-----d~~~le~~l~~~---~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~  213 (383)
T d1bs0a_         145 ---QLRRFAHN-----DVTHLARLLASP---CPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGE  213 (383)
T ss_dssp             ---EEEEECTT-----CHHHHHHHHHSC---CSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSG
T ss_pred             ---cceEecch-----HHHHHHHHhccc---CCCceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCC
Confidence               77778776     999999988653   3346789999999999999999999999999999999999999987743


Q ss_pred             ccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCch
Q psy12303        271 KKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIF  350 (480)
Q Consensus       271 ~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l  350 (480)
                      .........++ ..|+++.++.|.++.+   |.++.......+.......+|.+.....                +..+.
T Consensus       214 ~g~G~~~~~~~-~~~~~~~t~~ka~g~~---Gg~v~~~~~~~~~l~~~~~~~~~s~~~~----------------p~~~a  273 (383)
T d1bs0a_         214 QGRGSCWLQKV-KPELLVVTFGKGFGVS---GAAVLCSSTVADYLLQFARHLIYSTSMP----------------PAQAQ  273 (383)
T ss_dssp             GGCCHHHHTTC-CCSEEEEESSSTTSSC---CEEEEECHHHHHHHHHHCHHHHSSBCCC----------------HHHHH
T ss_pred             cccchHHHcCC-cccccccccccccccc---ccccccchhHHHHHHhhchhhhhccccc----------------chHHH
Confidence            32111012233 5677777888988863   3334455555555444444554332110                01112


Q ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHH
Q psy12303        351 KLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKG  430 (480)
Q Consensus       351 ~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~  430 (480)
                      ++..+++.+-....+...++..++..++.+.|.+  .|+.+. +..+.++.+.. +..       +       ...++.+
T Consensus       274 a~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~--~g~~~~-~~~s~Ii~v~~-g~~-------~-------~a~~~~~  335 (383)
T d1bs0a_         274 ALRASLAVIRSDEGDARREKLAALITRFRAGVQD--LPFTLA-DSCSAIQPLIV-GDN-------S-------RALQLAE  335 (383)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT--SSCEEC-SCCSSBCCEEE-ESH-------H-------HHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh--cCCccC-CCCCCEEEEEE-CCH-------H-------HHHHHHH
Confidence            3333444433345567778888999999999998  678774 33334333321 111       0       1246778


Q ss_pred             HHHhcccEEEe---eeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        431 RMMQAGTMMVG---YQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       431 ~l~~~g~~~~~---~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      +|.++|+++..   |++..+ ...+|++ ++..+|++|||+++++|+.+
T Consensus       336 ~L~~~Gi~v~~~~~PtVp~g-~~~lRi~-~~a~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         336 KLRQQGCWVTAIRPPTVPAG-TARLRLT-LTAAHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             HHHHTTEECCEECTTSSCTT-CEEECCB-CCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHCCceEEEEcCCCCCCC-CceEEEE-eCCCCCHHHHHHHHHHHHhc
Confidence            89999854222   222234 4679999 99999999999999999875

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.91  E-value=4.6e-23  Score=198.03  Aligned_cols=341  Identities=13%  Similarity=0.041  Sum_probs=226.3

Q ss_pred             cCCCCCccccccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHH
Q psy12303         69 RTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLA  148 (480)
Q Consensus        69 ~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~  148 (480)
                      .+.+..|++....+. ......+.+..+-.... .-....+...+..++.+.+++++|.+.  .+++++|..||..++.+
T Consensus        49 ~FsSndYLGL~~~p~-v~~a~~~al~~yG~gs~-~Sr~~~G~~~~h~~LE~~lA~~~g~e~--all~~sG~~An~~~i~~  124 (396)
T d2bwna1          49 VWCGNDYLGMGQHPV-VLAAMHEALEAVGAGSG-GTRNISGTTAYHRRLEAEIAGLHQKEA--ALVFSSAYNANDATLST  124 (396)
T ss_dssp             ECSCSCTTSGGGCHH-HHHHHHHHHHHHCSCCC-SBTTTBCCBHHHHHHHHHHHHHTTCSE--EEEESCHHHHHHHHHHH
T ss_pred             EEEcccccCcCCCHH-HHHHHHHHHHHhCCCcc-ccccccCCchHHHHHHHHHHHHhCCCc--eeeeecchHHHHHHHHH
Confidence            367788888754432 22222244444322111 111122234555566677999999976  89999999999999987


Q ss_pred             HHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEE
Q psy12303        149 ARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFV  228 (480)
Q Consensus       149 ~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v  228 (480)
                      ....        +    +++ +|+.+...|.|+..+++..+.   +++.++.+     |++++++.++...  ...+++|
T Consensus       125 l~~~--------~----~~d-~i~~D~~~Hasi~~g~~ls~a---~~~~f~Hn-----d~~~l~~l~~~~~--~~~~~~i  181 (396)
T d2bwna1         125 LRVL--------F----PGL-IIYSDSLNHASMIEGIKRNAG---PKRIFRHN-----DVAHLRELIAADD--PAAPKLI  181 (396)
T ss_dssp             HHHH--------S----TTC-EEEEETTCCHHHHHHHHHSCC---CEEEECTT-----CHHHHHHHHHHSC--TTSCEEE
T ss_pred             Hhcc--------c----CCC-ceeehhhhhhccchhhhcccc---CceEeecc-----hHHHhhhHHhhhc--ccCceeE
Confidence            6431        1    324 899999999999999999987   77888876     8889988876542  3346789


Q ss_pred             EeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcc-cCCCCCCccceeCccccCCCcccceEEEEe
Q psy12303        229 NCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPR-LTGIERADSVTWNPHKLMGTLLQCSTIHFK  307 (480)
Q Consensus       229 ~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~  307 (480)
                      ++....++.|.+.|+++|.++|++||++++||+||+.|.+--....... ..-...+|+++.++.|.+++   .|.+++.
T Consensus       182 v~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~---~Gg~v~~  258 (396)
T d2bwna1         182 AFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGV---FGGYIAA  258 (396)
T ss_dssp             EEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCS---CCEEEEE
T ss_pred             EEEeeccCcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccc---cccccch
Confidence            9999999999999999999999999999999999999987322111100 11123679999999999987   4455666


Q ss_pred             CchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12303        308 QDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD  387 (480)
Q Consensus       308 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~  387 (480)
                      ++...+.......+|.+.....                +..+.++..+++.+..+...++.++...+.+++.+.+.+  .
T Consensus       259 ~~~~i~~l~~~~~~~ifStalp----------------p~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~--~  320 (396)
T d2bwna1         259 SARMVDAVRSYAPGFIFSTSLP----------------PAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKA--L  320 (396)
T ss_dssp             CHHHHHHHHHHCHHHHTSBCCC----------------HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred             hHHHHHHHHhhcchhhhcccCc----------------HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh--c
Confidence            7766666554455555443211                011222333344433344456677788899999999988  5


Q ss_pred             CeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEee----eeeCCcccEEEEecccCCCC
Q psy12303        388 KFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGY----QPLNDLPNFFRNIISSAAVT  462 (480)
Q Consensus       388 g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~----~~~~~~~~~~R~~~~~~~~t  462 (480)
                      |+.+. +..+.++.+.. +..       .       .+..+.++|. +.|.+ +..    ++..+ ...+|++ .+..+|
T Consensus       321 g~~~~-~~~spIvpv~i-g~~-------~-------~~~~~a~~lL~e~Gi~-v~~i~~PtVp~g-~~rlRi~-lsa~ht  381 (396)
T d2bwna1         321 GMPII-DHGSHIVPVVI-GDP-------V-------HTKAVSDMLLSDYGVY-VQPINFPTVPRG-TERLRFT-PSPVHD  381 (396)
T ss_dssp             TCCBC-CCSSSCEEEEC-CCH-------H-------HHHHHHHHHHHHHCEE-CCEECTTTSCTT-CCEEEEC-CCTTSC
T ss_pred             CCCcC-CCCCCEEEEEe-CCH-------H-------HHHHHHHHHHHhCCEE-EEEECCCcCCCC-CeeEEEE-eCccCC
Confidence            77764 34455554432 111       0       0234556655 46743 332    22234 4689999 899999


Q ss_pred             HHHHHHHHHHHHHh
Q psy12303        463 EGDIDFLLTEMDRL  476 (480)
Q Consensus       463 ~~di~~~~~~l~~~  476 (480)
                      ++|||+++++|+++
T Consensus       382 ~edId~l~~~L~~i  395 (396)
T d2bwna1         382 LKQIDGLVHAMDLL  395 (396)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999875

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=5.7e-23  Score=198.11  Aligned_cols=329  Identities=8%  Similarity=-0.055  Sum_probs=211.1

Q ss_pred             HHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCc
Q psy12303         91 EWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQ  168 (480)
Q Consensus        91 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~  168 (480)
                      +.+...+......|....+ .++.+.+++++.+.+|.  +++++++|+|+++++..++.+..+              ||+
T Consensus        19 eal~~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~--------------~gd   83 (361)
T d1d2fa_          19 EALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSE--------------TGE   83 (361)
T ss_dssp             HHHHHHHTTCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSC--------------TTC
T ss_pred             HHHHHHHhCCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhccc--------------ccc
Confidence            5555554444445654444 56788889999998886  457899999999998888777643              556


Q ss_pred             eEEEecCCCchhHHHHHHHcCCCCCCeEEeeCC---CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---
Q psy12303        169 LVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD---KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---  242 (480)
Q Consensus       169 ~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~---~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---  242 (480)
                       .|++..+.|+.+...++..|.   .++.++.+   +++.+|++.+++.+.+.     ++++|++++++||||.+.+   
T Consensus        84 -~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~~~~~~~~~~~-----~~~~i~l~~p~NPTG~~~s~~~  154 (361)
T d1d2fa_          84 -GVVIHTPAYDAFYKAIEGNQR---TVMPVALEKQADGWFCDMGKLEAVLAKP-----ECKIMLLCSPQNPTGKVWTCDE  154 (361)
T ss_dssp             -EEEEEESCCHHHHHHHHHTTC---EEEEEECEECSSSEECCHHHHHHHHTST-----TEEEEEEESSCTTTCCCCCTTH
T ss_pred             -ccccccccccchhHHHHhhcc---eEEeecccccccccccccccchhhcccC-----CceeEEecccccccccccchhh
Confidence             788888999999999999888   66777664   34568999999888542     3889999999999998866   


Q ss_pred             hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcc
Q psy12303        243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAE  321 (480)
Q Consensus       243 l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~  321 (480)
                      +++|+++|+++|+++++|++|+...+....... .......-.++..++.|.++.| .++|++++...............
T Consensus       155 ~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~-~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~  233 (361)
T d1d2fa_         155 LEIMADLCERHGVRVISDEIHMDMVWGEQPHIP-WSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKG  233 (361)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCC-GGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhhhheeeeecccccccccccccccc-cccccccccccccccccccccccccceeeecchhHHHHHHhhhccc
Confidence            778999999999999999999876543221111 1111112235666788877644 67888887665433321110000


Q ss_pred             cccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEE
Q psy12303        322 YLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVS  401 (480)
Q Consensus       322 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~  401 (480)
                      ....                 .+....+..+.........+..++......+.++.+.+.+.+..+++.+ .+|+.+.++
T Consensus       234 ~~~~-----------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~p~gg~~~  295 (361)
T d1d2fa_         234 RDGL-----------------SSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNW-QIPQSTYLA  295 (361)
T ss_dssp             TSCC-----------------CSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCC-CCCSBCSEE
T ss_pred             cccc-----------------ccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhcccccc-cccCceeEE
Confidence            0000                 0000111111111122245556666677777777777776552567765 357777666


Q ss_pred             EEeec-CccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeCCc--ccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        402 FWYLP-TRVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPLNDL--PNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       402 f~~~~-~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~~~--~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      |.-.+ ...+              ..++..+|.++ |+.+ .++...+.  .+++|+|+   .++++++++.+++|.+++
T Consensus       296 ~~~l~~~~~~--------------~~~~~~~Ll~~~gv~v-~pG~~F~~~~~~~vRis~---~~~~e~l~~al~rl~~~l  357 (361)
T d1d2fa_         296 WLDLRPLNID--------------DNALQKALIEQEKVAI-MPGYTYGEEGRGFVRLNA---GCPRSKLEKGVAGLINAI  357 (361)
T ss_dssp             EEECGGGCCC--------------HHHHHHHHHHTTCEEC-EEGGGGCGGGTTEEEEEC---CSCHHHHHHHHHHHHHHH
T ss_pred             EEEccCCCCC--------------HHHHHHHHHHhCCEEE-EeccccCCCCCCEEEEEE---cCCHHHHHHHHHHHHHHH
Confidence            54322 1111              24566777665 6444 43332221  57999994   357899999999999887


Q ss_pred             ccC
Q psy12303        478 HDL  480 (480)
Q Consensus       478 ~~l  480 (480)
                      ++|
T Consensus       358 ~~l  360 (361)
T d1d2fa_         358 RAV  360 (361)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            753

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=3.5e-22  Score=192.61  Aligned_cols=401  Identities=13%  Similarity=0.097  Sum_probs=261.8

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCcccCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHhhccCCccCCCCCccccccCCCC
Q psy12303          5 ETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLD   84 (480)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~   84 (480)
                      .+..++|++.|-  ++++.    ..+..+ |++++ ..+.++| ++.+..++++.+.++...+....+ .|++...+...
T Consensus         8 ~~d~~~mL~~iG--~~s~~----dl~~~I-P~~~~-~~~~~lp-~~~sE~e~~r~~~~ls~kN~~~~~-~fig~G~~~~~   77 (437)
T d1wyua1           8 EEEIREMLRRVG--AASLE----DLFAHL-PKEIL-SPPIDLP-EPLPEWKVLEELRRLAAQNLPAHK-AFLGGGVRSHH   77 (437)
T ss_dssp             HHHHHHHHHHHT--CSSTG----GGGTTS-CGGGS-SCCCCCC-CCCCHHHHHHHHHHHHHTSCCCTT-CCCCSSCCCCC
T ss_pred             HHHHHHHHHHcC--CCCHH----HHHHhc-cHHHh-cCCCCCC-CCCCHHHHHHHHHHHHhCCCCcCc-cccCcccCCce
Confidence            445566766654  11222    222333 66664 4467788 467999999999998776643322 46666555555


Q ss_pred             hHHhHHHHHH--HHcCc-CCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcC
Q psy12303         85 VVSMAGEWLI--ATANT-NMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKG  161 (480)
Q Consensus        85 ~~~~~~~~l~--~~~~~-~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g  161 (480)
                      .++++.+++.  .+++. .++..+.+.+.-++-.++.++++++.|++..+.....|++. ...++.+++...       +
T Consensus        78 ~p~~i~~~~~~~~~~t~ytPyqpE~sQG~Lq~l~e~q~~l~eltGmd~~n~s~~~ga~a-~~~~~~~~~~~~-------~  149 (437)
T d1wyua1          78 VPPVVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIANASMYDGATA-LAEGVLLALRET-------G  149 (437)
T ss_dssp             CCHHHHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHH-HHHHHHHHHHHH-------T
T ss_pred             eCHHHHHHHhChhhhhhCCCcchHHHHHHHHHHHHHHHHHHHhhCCCccccCchHHHHH-HHHHHHHHHhhh-------c
Confidence            5666655544  23333 24555778888888899999999999999877777776665 445565655431       1


Q ss_pred             CCccCCceEEEecCCCchhHHHH----HHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcc
Q psy12303        162 LSAIKGQLVMFTSDQCHYSVRSC----AAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVL  237 (480)
Q Consensus       162 ~~~~~g~~~vl~~~~~h~s~~~~----~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~  237 (480)
                            +..++++...|++....    +...|+   +++.+|.++.+..+ ++    +.++      +++|++++|+ ..
T Consensus       150 ------~~~~~v~~~~~p~~~~v~~t~a~~~g~---~vv~v~~~~~~~~~-~~----~~~~------~Aavmi~~Pn-t~  208 (437)
T d1wyua1         150 ------RMGVLVSQGVHPEYRAVLRAYLEAVGA---KLLTLPLEGGRTPL-PE----VGEE------VGAVVVQNPN-FL  208 (437)
T ss_dssp             ------CCEEEEETTSCHHHHHHHHHHHHHTTC---EEEEECCBTTBCCC-CC----CCTT------EEEEEEESSC-TT
T ss_pred             ------ccccccccccChHHhhhhhhhccccee---eEEeeecccccchh-hh----hccc------eeEEEEcccc-cc
Confidence                  22677888899875543    445576   88889886544332 22    2333      9999999995 57


Q ss_pred             ccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCccc-----ceEEEEeCchhh
Q psy12303        238 GAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ-----CSTIHFKQDGLL  312 (480)
Q Consensus       238 G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~-----~g~~~~~~~~~~  312 (480)
                      |.+.++++|.+++++.|..+++|+..-......+...+       ++|+++.+ ||.++.|.+     .|.+.++++ +.
T Consensus       209 G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~-------GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~~~-l~  279 (437)
T d1wyua1         209 GALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAY-------GADIAVGD-GQSLGLPMGFGGPHFGFLATKKA-FV  279 (437)
T ss_dssp             SBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHH-------TCSEEEEE-CTTTTCCCGGGCSCCEEEEECGG-GG
T ss_pred             ccccchHHHHHHhhhccceEEeeechhhhhcccccccc-------ccceEeec-cceeccccCCCcCccccccccch-hh
Confidence            99999999999999999999888755433333333344       89999999 666666654     477777653 32


Q ss_pred             HhhhcCCcccccccccccC---------------cccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q psy12303        313 ISCNQMSAEYLFMQDKLYD---------------VRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEY  377 (480)
Q Consensus       313 ~~~~~~~~~~l~~~~~~~~---------------~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~  377 (480)
                      +    ..++.+.+......               .+.+..+.++-.+....++.+|+.+..+|.+|+++..++...+++|
T Consensus       280 r----~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~y  355 (437)
T d1wyua1         280 R----QLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHK  355 (437)
T ss_dssp             G----GCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c----cccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHH
Confidence            2    23333332111100               0111122222112222456777888889999999999999999999


Q ss_pred             HHHHHhcCCCCeEEecC-CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEee-eeeCCcccEEEEe
Q psy12303        378 MVKKIKSMPDKFYLILE-PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGY-QPLNDLPNFFRNI  455 (480)
Q Consensus       378 l~~~l~~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~-~~~~~~~~~~R~~  455 (480)
                      +.+.|.+ ++|++++.+ +....+++.. +..                ..++.++|.+.|...-.. ..+.. .+.+.++
T Consensus       356 l~~~L~~-~~g~~~~~~~~~f~ef~v~~-~~~----------------~~~i~k~L~d~G~~~~~~~~~~~~-~~~lli~  416 (437)
T d1wyua1         356 LHALLLE-VPGVRPFTPKPFFNEFALAL-PKD----------------PEAVRRALAERGFHGATPVPREYG-ENLALFA  416 (437)
T ss_dssp             HHHHHTT-STTCEECSCSSBCSEEEEEC-SSC----------------HHHHHHHHHHTTCCCCEECCTTSC-SSEEEEE
T ss_pred             HHHHhhh-cCCeeccCCCCeeeEEEEEC-CCC----------------HHHHHHHHHhCCCCCCcccccCCC-CCeEEEe
Confidence            9999999 899987643 3344454432 111                246788899998532111 12223 5789999


Q ss_pred             cccCCCCHHHHHHHHHHHHHhh
Q psy12303        456 ISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       456 ~~~~~~t~~di~~~~~~l~~~~  477 (480)
                       +...+|++|||+++++|++++
T Consensus       417 -~TE~~tkeeiD~~v~al~eil  437 (437)
T d1wyua1         417 -ATELHEEEDLLALREALKEVL  437 (437)
T ss_dssp             -CCTTCCHHHHHHHHHHHHHHC
T ss_pred             -cCCCCCHHHHHHHHHHHHHhC
Confidence             889999999999999999874

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.90  E-value=1e-22  Score=198.50  Aligned_cols=333  Identities=11%  Similarity=0.049  Sum_probs=220.8

Q ss_pred             hHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCcc
Q psy12303         88 MAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAI  165 (480)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~  165 (480)
                      .+.+.+...+......|....+..++.+++.+++.+.+|.  +++++++|+|+++++..++.+..+              
T Consensus        50 ~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~--------------  115 (395)
T d1xi9a_          50 HMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLD--------------  115 (395)
T ss_dssp             HHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCC--------------
T ss_pred             HHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhcC--------------
Confidence            3445555555444445776777889999999999999887  457899999999999888877754              


Q ss_pred             CCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCC--CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC-
Q psy12303        166 KGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD--KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP-  242 (480)
Q Consensus       166 ~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~-  242 (480)
                      ||+ .|++..++|+.+...++..|.   +++.+|..  .++.+|++++++.+.+.      +++|++++|+||||.+.+ 
T Consensus       116 ~Gd-~vlv~~P~y~~~~~~~~~~g~---~~v~v~~~~~~~~~~d~~~~~~~~~~~------~~~v~l~~P~NPTG~~~s~  185 (395)
T d1xi9a_         116 PGD-EILVPGPSYPPYTGLVKFYGG---KPVEYRTIEEEDWQPDIDDIRKKITDR------TKAIAVINPNNPTGALYDK  185 (395)
T ss_dssp             TTC-EEEEEESCCHHHHHHHHHTTC---EEEEEEEEGGGTSEECHHHHHHHCCTT------EEEEEEESSCTTTCCCCCH
T ss_pred             CCC-EEEEcCCccccchhhhhhcCC---EEEEEeccccccccchHHHHHHhhccc------ccEEEecCCCCCccchhhH
Confidence            556 788888999999999999998   77778754  35789999999888665      899999999999999966 


Q ss_pred             --hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCch-hhHhhhcC
Q psy12303        243 --IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDG-LLISCNQM  318 (480)
Q Consensus       243 --l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~-~~~~~~~~  318 (480)
                        +++|+++|++|+++++.|++|.......+.........- .--+++.|++|.++.| ..+|++++.+.. .+......
T Consensus       186 ~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~  264 (395)
T d1xi9a_         186 KTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKD-VPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREA  264 (395)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSS-SCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHH
T ss_pred             HHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCC-CCEEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHH
Confidence              688899999999999999999876542221110011111 1125566899988754 678988765432 11111100


Q ss_pred             CcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCcee
Q psy12303        319 SAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMV  398 (480)
Q Consensus       319 ~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~  398 (480)
                      . ..+.....              +.......++...+. -+.+.+++..+...+.++.+.+.|.+ .+++.+ .+|+.+
T Consensus       265 ~-~~~~~~~~--------------~~~~~~q~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~-~~p~gg  326 (395)
T d1xi9a_         265 I-DRLARIRL--------------CPNTPAQFAAIAGLT-GPMDYLKEYMKKLKERRDYIYKRLNE-IPGIST-TKPQGA  326 (395)
T ss_dssp             H-HHHHHHTC--------------CSCSHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHHHHHHHT-STTEEC-CCCCBS
T ss_pred             H-HHhhcCCC--------------CcCHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHh-CCCcee-cCCCee
Confidence            0 00000000              000011112222222 24567788888889999999999999 777775 577777


Q ss_pred             EEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCCc--ccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        399 NVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLNDL--PNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       399 ~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~~--~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                      .+.|.-.+.... .+           ..++...+. +.|++ +.++...+.  .+++|+++   .++++++++.+++|++
T Consensus       327 ~~~~~~l~~~~~-~~-----------~~~~~~~ll~~~gV~-v~PG~~Fg~~~~~~~Ris~---~~~~e~l~eal~rl~~  390 (395)
T d1xi9a_         327 FYIFPKIEVGPW-KN-----------DKEFVLDVLHNAHVL-FVHGSGFGEYGAGHFRAVF---LPPIEILEEAMDRFEK  390 (395)
T ss_dssp             SEECCEECSCSC-SS-----------HHHHHHHHHHHHCEE-CEEGGGGCGGGTTBEEEEC---CSCHHHHHHHHHHHHH
T ss_pred             EEEeEECCCCCC-CC-----------HHHHHHHHHHhCCEE-EEcChhhCCCCCCEEEEEe---cCCHHHHHHHHHHHHH
Confidence            776643332211 11           123344444 45644 444333222  57899994   3578999999999999


Q ss_pred             hhcc
Q psy12303        476 LGHD  479 (480)
Q Consensus       476 ~~~~  479 (480)
                      ++++
T Consensus       391 ~l~e  394 (395)
T d1xi9a_         391 FMKE  394 (395)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8764

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.90  E-value=3.4e-22  Score=199.08  Aligned_cols=327  Identities=16%  Similarity=0.103  Sum_probs=191.6

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCC
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDN  194 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~  194 (480)
                      .++.+.+|+++|++.  .+|+++||+++..++..+.-+             ||+ +|+++..+|.|+..++..++.....
T Consensus        69 ~eae~~~A~~~ga~~--a~f~~~Gtt~~n~a~i~a~~~-------------~gd-~Vi~~~~~H~Sv~~~~~~l~~~~~~  132 (462)
T d1c4ka2          69 VAAEKHAARVYNADK--TYFVLGGSSNANNTVTSALVS-------------NGD-LVLFDRNNHKSVYNSALAMAGGRPV  132 (462)
T ss_dssp             HHHHHHHHHHTTCSE--EEEESSHHHHHHHHHHHHHCC-------------TTC-EEEEETTCCHHHHHHHTTTTCCEEE
T ss_pred             HHHHHHHHHHhCCCe--EEEECCchHHHHHHHHHHhcC-------------CCC-eEEecccchHHHHHHHHHHhcCCce
Confidence            345677999999975  788777776655554444322             656 8999999999999888777543324


Q ss_pred             eEEeeCCCCC--------CCCHHHHHHHHH---HHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccc
Q psy12303        195 CVEVPSDKRG--------RLIPSELERLVL---ERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       195 v~~v~~~~~~--------~~d~~~L~~~i~---~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                      +..+++++.+        .++.+.+++.+.   .....+.++..+++.+.+|..|.+.|+++|+++|+++|+++|+|+||
T Consensus       133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~  212 (462)
T d1c4ka2         133 YLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAW  212 (462)
T ss_dssp             EECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTT
T ss_pred             eeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechh
Confidence            4455556544        234444443322   12233444666666677789999999999999999999999999999


Q ss_pred             cccccccccccCcc-cCC-----CCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCC
Q psy12303        264 GGGLLLSKKYRHPR-LTG-----IERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       264 ~~~~~~~~~~~~~~-~~~-----~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  337 (480)
                      +.+..+.+..+... ..+     ..++|++++|+||+++++.+++++..++..............+.....         
T Consensus       213 ~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~---------  283 (462)
T d1c4ka2         213 VGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFN---------  283 (462)
T ss_dssp             CCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHH---------
T ss_pred             hccccccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhhHHHHHHhhh---------
Confidence            99988776543311 111     124699999999999988887777776643321100000000000000         


Q ss_pred             CccccCCCCC--CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCcee-----------------
Q psy12303        338 DKVIQCGRHN--DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMV-----------------  398 (480)
Q Consensus       338 ~~~~~~~r~~--~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~-----------------  398 (480)
                        ..+.+.+.  ....+-.+...+..+...++.++..++++++++.+.+ ..+......+...                 
T Consensus       284 --~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  360 (462)
T d1c4ka2         284 --LFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIK-AGSMFRPFVPPVVNGKKWEDGDTEDMANNI  360 (462)
T ss_dssp             --HHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSEESSCSEETTEEGGGSCHHHHTTCG
T ss_pred             --hcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-hhhhhhcccccccccccccccchHhhhccc
Confidence              00001111  1111222223333455677788889999999999988 6554221111000                 


Q ss_pred             --------------------E-------EEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccE
Q psy12303        399 --------------------N-------VSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNF  451 (480)
Q Consensus       399 --------------------~-------v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~  451 (480)
                                          .       +.+.. + .+...........+.  ...+.+.|.+.|+ .+..   .+ .+.
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~-~-gi~~~~g~~~~~G~~--~~~~~~~L~~~gI-~~e~---~~-~~~  431 (462)
T d1c4ka2         361 DYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTT-P-GINPETGDYEDFGVP--ATIVANYLRDHGI-IPEK---SD-LNS  431 (462)
T ss_dssp             GGGBCCTTCTTTCCTTCCTTCEEECTTEEEEEC-S-SEETTTTEECSSCCC--HHHHHHHHHHTTC-CCSE---EC-SSE
T ss_pred             chhccCCcchhccccccCccceecccceeEEec-C-CccccccchhhcCCc--HHHHHHHHHHcCC-eeec---cC-CCe
Confidence                                0       00100 0 000000000000000  2345666767773 2221   12 468


Q ss_pred             EEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        452 FRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       452 ~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      +|++ +++.+|++|||+++++|+++.+.
T Consensus       432 i~~~-~s~~~T~edid~li~aL~ei~r~  458 (462)
T d1c4ka2         432 ILFL-MTPAETPAKMNNLITQLLQLQRL  458 (462)
T ss_dssp             EEEE-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEE-ecCCCCHHHHHHHHHHHHHHHHH
Confidence            9999 88999999999999999998764

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.90  E-value=5.2e-22  Score=194.73  Aligned_cols=330  Identities=11%  Similarity=0.042  Sum_probs=219.2

Q ss_pred             HHHHHHc-CcCCcchhcChhhHHHHHHHHHHHHHHhC--------CCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcC
Q psy12303         91 EWLIATA-NTNMFTYEIAPVFILMETVVLEKMRQIIG--------WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKG  161 (480)
Q Consensus        91 ~~l~~~~-~~~~~~~~~~~~~~~~e~~~~~~la~~~g--------~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g  161 (480)
                      +.+...+ ......|....+..++.+.+.+|+.+.++        .+++++++|+|+++|+..++.+..+          
T Consensus        54 ~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~----------  123 (412)
T d1bw0a_          54 KKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICD----------  123 (412)
T ss_dssp             HHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCC----------
T ss_pred             HHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhc----------
Confidence            4444433 33334576667778899999999998764        3456899999999999999988754          


Q ss_pred             CCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccc
Q psy12303        162 LSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGA  239 (480)
Q Consensus       162 ~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~  239 (480)
                          ||+ .|+++.++|+.+...++..|.   +++.+|+++  ++..++++|++.+.+.      ++++++++++||||.
T Consensus       124 ----~Gd-~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~~~~~l~~~~~~~------~~~~~l~np~NPtG~  189 (412)
T d1bw0a_         124 ----AGD-YALVPQPGFPHYETVCKAYGI---GMHFYNCRPENDWEADLDEIRRLKDDK------TKLLIVTNPSNPCGS  189 (412)
T ss_dssp             ----TTC-EEEEEESCCTHHHHHHHHTTC---EEEEEEEEGGGTTEECHHHHHHHCCTT------EEEEEEESSCTTTCC
T ss_pred             ----ccc-ceeeeeccchhhhhhhhccCc---cccccccccccccchhhHHHHhhhhcc------ccccccccccccccc
Confidence                556 788888999999999999998   788888764  4678999998877665      899999999999999


Q ss_pred             ccC---hHHHHHHHHHcCcEEEeeccccccccccccccC--cccCCCCCCc--cceeCccccCCCc-ccceEEEEeCchh
Q psy12303        240 FDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH--PRLTGIERAD--SVTWNPHKLMGTL-LQCSTIHFKQDGL  311 (480)
Q Consensus       240 ~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~--~~~~~~~~~D--~~~~s~hK~~~~p-~~~g~~~~~~~~~  311 (480)
                      +.+   +++|.++|++|++++++|++|+...+.......  ......+...  ++..+++|.++.| ..+|++++.+...
T Consensus       190 ~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~  269 (412)
T d1bw0a_         190 NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHG  269 (412)
T ss_dssp             CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTC
T ss_pred             cchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCCCCcccccccchhh
Confidence            855   788888899999999999999876653221111  0111111111  3344678977654 7899998765421


Q ss_pred             h-----HhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy12303        312 L-----ISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP  386 (480)
Q Consensus       312 ~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~  386 (480)
                      .     ...... ..+....                 . ......+...+.....+.+.+..++..+.++.+.+.|.+ .
T Consensus       270 ~~~~~~~~~~~~-~~~~~~~-----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~-~  329 (412)
T d1bw0a_         270 NGPSFLEGLKRV-GMLVCGP-----------------C-TVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE-C  329 (412)
T ss_dssp             SCHHHHHHHHHH-HHHHTCS-----------------C-HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred             cchhhhhhhccc-cccccCC-----------------c-hhhhhhcccccccccccccccccchhHHHHHHHHHHHHH-h
Confidence            1     110000 0000000                 0 000111111222224667788889999999999999998 8


Q ss_pred             CCeEEecCCceeEEEEEeecCc-cCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeCCcccEEEEecccCCCCHH
Q psy12303        387 DKFYLILEPEMVNVSFWYLPTR-VRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPLNDLPNFFRNIISSAAVTEG  464 (480)
Q Consensus       387 ~g~~~~~~~~~~~v~f~~~~~~-~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~~~~~~~R~~~~~~~~t~~  464 (480)
                      +|+.+. .|+.+.++|.-.+.. ..+...          ..++.++|.++ |+++++...+ +..+++|++++   .+++
T Consensus       330 ~g~~~~-~p~gg~~l~~~~~~~~~~~~~~----------~~~~~~~ll~~~gV~v~PG~~F-g~~g~iRis~~---~~~e  394 (412)
T d1bw0a_         330 IGLAPT-MPRGAMYLMSRIDLEKYRDIKT----------DVEFFEKLLEEENVQVLPGTIF-HAPGFTRLTTT---RPVE  394 (412)
T ss_dssp             TTEEEC-CCCBTTEEEEEECGGGBSSCCS----------HHHHHHHHHHHHCEECEEGGGG-TCTTEEEEECC---SCHH
T ss_pred             cCceec-CCCCceEEEEeCChhhcCCCCC----------HHHHHHHHHHhCCEEEEecccc-CCCCeEEEEEc---CCHH
Confidence            899974 677777766443321 111111          13455666554 6544443333 33689999953   4789


Q ss_pred             HHHHHHHHHHHhhcc
Q psy12303        465 DIDFLLTEMDRLGHD  479 (480)
Q Consensus       465 di~~~~~~l~~~~~~  479 (480)
                      ++++.+++|++++++
T Consensus       395 ~l~eal~Rl~~~l~~  409 (412)
T d1bw0a_         395 VYREAVERIKAFCQR  409 (412)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988753

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.89  E-value=1.1e-22  Score=198.30  Aligned_cols=329  Identities=12%  Similarity=-0.009  Sum_probs=213.4

Q ss_pred             HHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCc
Q psy12303         91 EWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQ  168 (480)
Q Consensus        91 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~  168 (480)
                      +.+...++.+...|..  ...++.+++++|+.+..|.  +++++++|+|+++++..++.+..+              ||+
T Consensus        51 ~al~~~~~~~~~~Y~~--g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~~--------------pgd  114 (394)
T d1c7na_          51 EGLKKYLDETVLGYTG--PTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTK--------------PGD  114 (394)
T ss_dssp             HHHHHHHHHCCCSSBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCC--------------TTC
T ss_pred             HHHHHHHhCCCcCCCC--CCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhccccc--------------ccc
Confidence            4555444444445532  3468888999999998887  567899999999999999988765              556


Q ss_pred             eEEEecCCCchhHHHHHHHcCCCCCCeEEeeCC---CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---
Q psy12303        169 LVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD---KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---  242 (480)
Q Consensus       169 ~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~---~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---  242 (480)
                       .|++..+.++.........|.   ..+.++..   ..+.+|.+.++.++..     ..++++++++|+||||.+.+   
T Consensus       115 -~vi~~~p~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~d~~~~~~~~~~-----~~~~~i~l~~P~NPTG~v~s~~~  185 (394)
T d1c7na_         115 -GVIIITPVYYPFFMAIKNQER---KIIECELLEKDGYYTIDFQKLEKLSKD-----KNNKALLFCSPHNPVGRVWKKDE  185 (394)
T ss_dssp             -EEEECSSCCTHHHHHHHTTTC---EEEECCCEEETTEEECCHHHHHHHHTC-----TTEEEEEEESSBTTTTBCCCHHH
T ss_pred             -ccccccCcccchhhHHhhhhh---cccccccccccccccchhhhhhhhhcc-----ccceEEEecccccccceeccHHH
Confidence             677787888999999998887   55666543   3356888888776642     23899999999999999966   


Q ss_pred             hHHHHHHHHHcCcEEEeeccccccccccccccCc--ccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCC
Q psy12303        243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHP--RLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMS  319 (480)
Q Consensus       243 l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~  319 (480)
                      +++|+++|+++++++++|++|....+........  ........-+++.|+.|.++.| ..+|++++.+..+........
T Consensus       186 l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~  265 (394)
T d1c7na_         186 LQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSR  265 (394)
T ss_dssp             HHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHH
T ss_pred             hhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccccccChhhhhhhhhhh
Confidence            6778889999999999999998766532221110  0011112235566889988754 678999887765544322111


Q ss_pred             cccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeE
Q psy12303        320 AEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVN  399 (480)
Q Consensus       320 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~  399 (480)
                       .....                 +........+.........+..++..+...+..+.+.+.++...+++.+ ..|+++.
T Consensus       266 -~~~~~-----------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~p~g~~  326 (394)
T d1c7na_         266 -DATSG-----------------MPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKA-PLIEGTY  326 (394)
T ss_dssp             -HHTTC-----------------CCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBC-CCCSBSS
T ss_pred             -hhccc-----------------cccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhccccceee-cCCCcee
Confidence             00000                 0000011111112222245667777777777777888877752467765 4677777


Q ss_pred             EEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeCCc--ccEEEEecccCCCCHHHHHHHHHHHHHh
Q psy12303        400 VSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPLNDL--PNFFRNIISSAAVTEGDIDFLLTEMDRL  476 (480)
Q Consensus       400 v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~~~--~~~~R~~~~~~~~t~~di~~~~~~l~~~  476 (480)
                      ++|.-.+..  +.+           ..++.++|.++ |+++++ +...+.  .+++|+++.   +++++|++.+++|+++
T Consensus       327 ~~~~~~~~~--~~~-----------~~~~~~~Ll~~~gV~v~p-G~~Fg~~~~~~iRis~~---~~~e~i~eal~rl~~~  389 (394)
T d1c7na_         327 LQWIDFRAL--KMD-----------HKAMEEFMIHKAQIFFDE-GYIFGDGGIGFERINLA---APSSVIQESLERLNKA  389 (394)
T ss_dssp             EEEEECGGG--CCC-----------HHHHHHHHHHTTCCCCEE-GGGGCGGGTTEEEEECC---SCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCC--CCC-----------HHHHHHHHHHhCCEEEEc-chhhCCCCCCEEEEEEe---CCHHHHHHHHHHHHHH
Confidence            766433321  111           23566666655 654443 333222  579999943   4789999999999998


Q ss_pred             hccC
Q psy12303        477 GHDL  480 (480)
Q Consensus       477 ~~~l  480 (480)
                      +++|
T Consensus       390 l~~L  393 (394)
T d1c7na_         390 LKDL  393 (394)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8764

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=9.6e-22  Score=193.33  Aligned_cols=338  Identities=11%  Similarity=0.017  Sum_probs=215.7

Q ss_pred             HHhHHHHHHHHcCcC---CcchhcChhhHHHHHHHHHHHHHHhCC---CCCCeEECCChhHHHHHHHHHHHHhcCchhHh
Q psy12303         86 VSMAGEWLIATANTN---MFTYEIAPVFILMETVVLEKMRQIIGW---QGGDSILAPGGSISNLYAFLAARHKMFPTYKE  159 (480)
Q Consensus        86 ~~~~~~~l~~~~~~~---~~~~~~~~~~~~~e~~~~~~la~~~g~---~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~  159 (480)
                      ...+.+.+...+...   ...|....+..++.+.+++++.+..|.   +++++++|+|+++|+..++.+..+        
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~--------  126 (420)
T d1vp4a_          55 RKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLD--------  126 (420)
T ss_dssp             HHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhhc--------
Confidence            344445554443322   234666677788999999999999886   457899999999999988887654        


Q ss_pred             cCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCC---CccEEEEeccCCCc
Q psy12303        160 KGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKG---DIPFFVNCTSGTTV  236 (480)
Q Consensus       160 ~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~---~~~~~v~~~~~~~~  236 (480)
                            ||+ .|+++.+.|+.+...++..|.   +++.+|.+++ .+|++.++..+.+.....   ...+++++++++||
T Consensus       127 ------~Gd-~Vlv~~P~y~~~~~~~~~~g~---~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NP  195 (420)
T d1vp4a_         127 ------DES-YCVLDDPAYLGAINAFRQYLA---NFVVVPLEDD-GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNP  195 (420)
T ss_dssp             ------TTC-EEEEEESCCHHHHHHHHTTTC---EEEEEEEETT-EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTT
T ss_pred             ------ccc-ccccccccccchhHHHHHHhh---hccccccccc-ccccchhhhhhhhhHHHhhccccceeeEecCCCCc
Confidence                  556 788888999999999999987   7888888765 479999988887654432   23556778899999


Q ss_pred             cccccC---hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhH
Q psy12303        237 LGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLI  313 (480)
Q Consensus       237 ~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~  313 (480)
                      ||.+.+   +++|.++|++|++++++|++|....+..+.........-.+.-++..++.|+++.+..+|+++. ++..++
T Consensus       196 tG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~~G~RiG~~~~-~~~~i~  274 (420)
T d1vp4a_         196 AGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAG-SKEFIR  274 (420)
T ss_dssp             TCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEEC-CHHHHH
T ss_pred             cchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEeccccccccccccccccc-cchhhh
Confidence            999865   6899999999999999999998765533221110111111334566788999887788999875 555544


Q ss_pred             hhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh-cHHHHHHHHHHHH----HHHHHHHHHHhcCCCC
Q psy12303        314 SCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK-GDEGFEKQIDRLM----ELAEYMVKKIKSMPDK  388 (480)
Q Consensus       314 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~-g~~~~~~~~~~~~----~l~~~l~~~l~~~~~g  388 (480)
                      ........+....                  .......+...+... ..+.+++..+...    .+.+.|.+.+.+ .+|
T Consensus       275 ~l~~~~~~~~~~~------------------~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~g  335 (420)
T d1vp4a_         275 KIVQAKQSADLCS------------------PAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSD-IPG  335 (420)
T ss_dssp             HHHHHHHHHHSSC------------------CHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTT-STT
T ss_pred             hhhhhhhhccccC------------------chhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhcc-CCC
Confidence            3321111111000                  000111111112211 1222333333333    444555555556 689


Q ss_pred             eEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC--C-cccEEEEecccCCCCHHH
Q psy12303        389 FYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN--D-LPNFFRNIISSAAVTEGD  465 (480)
Q Consensus       389 ~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~--~-~~~~~R~~~~~~~~t~~d  465 (480)
                      +++. +|..+.++|.-.+...+.              .++.+.|.+.|+++.+...+.  + ..+++|+|+..  .++++
T Consensus       336 ~~~~-~p~gg~f~~~~~~~~~d~--------------~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~~--~~~e~  398 (420)
T d1vp4a_         336 VKWV-KSEGGLFIWLTLPEGFDT--------------WEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCL--PPDEK  398 (420)
T ss_dssp             CEEC-CCSBSSEEEEECCTTCCT--------------TTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSS--SCHHH
T ss_pred             cEEe-cCCceEEEEEECCCCCCH--------------HHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeCc--CCHHH
Confidence            9884 677777776544443221              234466777885554432221  1 14699999532  47889


Q ss_pred             HHHHHHHHHHhhcc
Q psy12303        466 IDFLLTEMDRLGHD  479 (480)
Q Consensus       466 i~~~~~~l~~~~~~  479 (480)
                      +++.+++|++++++
T Consensus       399 l~~a~~rL~~~l~~  412 (420)
T d1vp4a_         399 IVEGIKRLREVVLE  412 (420)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887754

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=2.6e-22  Score=193.92  Aligned_cols=314  Identities=12%  Similarity=0.045  Sum_probs=202.8

Q ss_pred             HHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCce
Q psy12303         90 GEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQL  169 (480)
Q Consensus        90 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~  169 (480)
                      .+.+...+... ..|....+..+    +++.+++.++.+++++++|+|+++++..++.+...              +|+ 
T Consensus        44 ~~al~~~l~~~-~~Y~~~~G~~e----lr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~~--------------~~d-  103 (368)
T d1v2da_          44 LEAVRRALGRQ-DQYAPPAGLPA----LREALAEEFAVEPESVVVTSGATEALYVLLQSLVG--------------PGD-  103 (368)
T ss_dssp             HHHHHHHTTTS-CSCCCTTCCHH----HHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCC--------------TTC-
T ss_pred             HHHHHHHhhcc-cCCCCCcCCHH----HHHHHHhhcccCCcceeeccchHHHHHHHhhcccc--------------ccc-
Confidence            35555555432 34544444444    45567888899988999999999999999887754              445 


Q ss_pred             EEEecCCCchhHHHHHHHcCCCCCCeEEeeCC---CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---h
Q psy12303        170 VMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD---KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---I  243 (480)
Q Consensus       170 ~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~---~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l  243 (480)
                      .|+++.++|+.+...+...|.   +++.++++   .++.+|++.+++++++.      ++++++++++||||.+.+   +
T Consensus       104 ~v~~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~p~NPtG~~~~~~~l  174 (368)
T d1v2da_         104 EVVVLEPFFDVYLPDAFLAGA---KARLVRLDLTPEGFRLDLSALEKALTPR------TRALLLNTPMNPTGLVFGEREL  174 (368)
T ss_dssp             EEEEEESCCTTHHHHHHHTTC---EEEEEECEEETTEEECCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHH
T ss_pred             cccccCCcchhhhhHHHhcCC---ccceeccccccccccCCHHHHHHhhccC------ceEEEEcCCCCcccccCCHHHH
Confidence            788888899999999999988   66666654   34689999999998776      889999999999999976   7


Q ss_pred             HHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCccc
Q psy12303        244 EEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEY  322 (480)
Q Consensus       244 ~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~  322 (480)
                      ++|+++|++||+++++|++|+......+.... ..... ....+..++.|.++.| ..+|+++..+ +...........+
T Consensus       175 ~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~sk~~~~~G~R~g~~~~~~-~~~~~~~~~~~~~  251 (368)
T d1v2da_         175 EAIARLARAHDLFLISDEVYDELYYGERPRRL-REFAP-ERTFTVGSAGKRLEATGYRVGWIVGPK-EFMPRLAGMRQWT  251 (368)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTCBSSSCCCCH-HHHCT-TTEEEEEEHHHHTTCGGGCCEEEECCT-TTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCeeeechhhhhhccccccccc-ccccc-cccceeecccccccccccccccccccc-cccchhhhhhhcc
Confidence            88999999999999999999876543332211 11111 2334445566555444 6788877544 3333222111110


Q ss_pred             ccccccccCcccCCCCccccCCCCCCchHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEE
Q psy12303        323 LFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVS  401 (480)
Q Consensus       323 l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~  401 (480)
                      ...                  ........+...+... -.+.++...+...+.++++.+.|++  .|+++. .|+.+.++
T Consensus       252 ~~~------------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~g~~~~-~p~g~~~~  310 (368)
T d1v2da_         252 SFS------------------APTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRA--MGLRVY-VPEGTYFL  310 (368)
T ss_dssp             TSS------------------CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH--TTCCEE-CCSBSSEE
T ss_pred             ccc------------------cccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHh--cCcEEe-cCCceeEE
Confidence            000                  0000111112222211 1235677777788889999999999  599875 56666665


Q ss_pred             EEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC---CcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        402 FWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN---DLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       402 f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~---~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      |.-.+..                  +..+.|.+.|+++.+...+.   ...+++|+++.   +++++|++.+++|++++
T Consensus       311 ~~~l~~~------------------~~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~---~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         311 MAELPGW------------------DAFRLVEEARVALIPASAFYLEDPPKDLFRFAFC---KTEEELHLALERLGRVV  368 (368)
T ss_dssp             EEECTTC------------------CHHHHHHHTCEECEEGGGGCSSSCCTTEEEEECC---SCHHHHHHHHHHHHHHC
T ss_pred             EEeCCcc------------------HHHHHHHhCCEEEEechhhCCCCCCCCEEEEEec---CCHHHHHHHHHHHHHhC
Confidence            5433311                  11234556775544322221   11579999943   57899999999998864

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.89  E-value=1.9e-21  Score=190.11  Aligned_cols=337  Identities=11%  Similarity=0.062  Sum_probs=214.9

Q ss_pred             HhHHHHHHHHcCcC---CcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcC
Q psy12303         87 SMAGEWLIATANTN---MFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKG  161 (480)
Q Consensus        87 ~~~~~~l~~~~~~~---~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g  161 (480)
                      ..+.+.+...+...   ...|....+..++.+.+.+++.+.+|.  ++.++++|+|+++++..++.+..+          
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~----------  116 (403)
T d1wsta1          47 ETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLN----------  116 (403)
T ss_dssp             HHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCC----------
T ss_pred             HHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhh----------
Confidence            34444444443222   234666677888999999999998885  568899999999999999887754          


Q ss_pred             CCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHH-HCCCccEEEEeccCCCccccc
Q psy12303        162 LSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERK-AKGDIPFFVNCTSGTTVLGAF  240 (480)
Q Consensus       162 ~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~-~~~~~~~~v~~~~~~~~~G~~  240 (480)
                          ||+ .|++..++|+.+...+..+|.   +++.||.++++ .+...+........ .....+.+++.++++||||.+
T Consensus       117 ----~gd-~v~~~~P~y~~~~~~~~~~g~---~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~  187 (403)
T d1wsta1         117 ----PGD-PIVVEAPTYLAAIQAFKYYDP---EFISIPLDDKG-MRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVT  187 (403)
T ss_dssp             ----TTC-EEEEEESCCHHHHHHHHTTCC---EEEEEEEETTE-ECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCC
T ss_pred             ----cCC-ccccCCCcchhhhHHHhhccc---cceeEeecccC-CccccccccchhhhhccccccccccccccCCCCCcc
Confidence                446 788888999999999999988   78888887643 23333433333322 223457788999999999998


Q ss_pred             cC---hHHHHHHHHHcCcEEEeeccccccccccccccC-cccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhh
Q psy12303        241 DP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH-PRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCN  316 (480)
Q Consensus       241 ~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~  316 (480)
                      .+   +++|+++|++||+++++|++|+........... ...... +..+++.|++|+++.+..+|+++.. +..+....
T Consensus       188 ~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~~~G~RiG~~i~~-~~~i~~~~  265 (403)
T d1wsta1         188 MSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDY-GRVIYLGTFSKILAPGFRIGWVAAH-PHLIRKME  265 (403)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSS-SCEEEEEESTTTTCGGGCCEEEEEC-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCC-CcEEEEccccceecCcccccccccc-hHHHHHHH
Confidence            66   678888999999999999999876543222111 011111 3446777999999866889998864 44433222


Q ss_pred             cCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHHhcCC-CCeEEecC
Q psy12303        317 QMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA-KGDEGFEKQIDRLMELAEYMVKKIKSMP-DKFYLILE  394 (480)
Q Consensus       317 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~-~g~~~~~~~~~~~~~l~~~l~~~l~~~~-~g~~~~~~  394 (480)
                      .........                  ............+.. .....+++..+......+.+.+.|.+.. .++.. ..
T Consensus       266 ~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~-~~  326 (403)
T d1wsta1         266 IAKQSIDLC------------------TNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEW-TK  326 (403)
T ss_dssp             HHHHHHHSS------------------CCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEE-CC
T ss_pred             HHHhhhccc------------------cccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEE-eC
Confidence            110000000                  000001111111111 1234456667777777788888887622 35665 46


Q ss_pred             CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeC---CcccEEEEecccCCCCHHHHHHHHH
Q psy12303        395 PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLN---DLPNFFRNIISSAAVTEGDIDFLLT  471 (480)
Q Consensus       395 ~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~---~~~~~~R~~~~~~~~t~~di~~~~~  471 (480)
                      |..+.++|...|....              ...+.+.|.++|+++++...+.   +..+++|+++..  .++++|++.++
T Consensus       327 p~gg~~~~~~~~~~~~--------------~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~--~~~~~l~~al~  390 (403)
T d1wsta1         327 PEGGMFVRVTLPEGID--------------TKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTY--VPEETIREGVR  390 (403)
T ss_dssp             CSBSSEEEEECCTTCC--------------TTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS--SCHHHHHHHHH
T ss_pred             CCceeEEEEECCCCCC--------------HHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEecC--CCHHHHHHHHH
Confidence            7777777755554322              1235567778886554432221   125799999432  47899999888


Q ss_pred             HHHHhhcc
Q psy12303        472 EMDRLGHD  479 (480)
Q Consensus       472 ~l~~~~~~  479 (480)
                      +|++.+++
T Consensus       391 rl~~~l~~  398 (403)
T d1wsta1         391 RLAETIKE  398 (403)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887653

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=1.6e-21  Score=188.85  Aligned_cols=319  Identities=11%  Similarity=0.063  Sum_probs=213.1

Q ss_pred             HHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCC
Q psy12303         90 GEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKG  167 (480)
Q Consensus        90 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g  167 (480)
                      .+.+...++.....|....+..++.+++.+++.+..|.  ++.++++|+|+++|+..++.+..+              ||
T Consensus        47 ~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--------------~g  112 (375)
T d1o4sa_          47 VEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLD--------------PG  112 (375)
T ss_dssp             HHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCC--------------TT
T ss_pred             HHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHHhC--------------CC
Confidence            35555555544556766677889999999999988886  467899999999999999888865              55


Q ss_pred             ceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---
Q psy12303        168 QLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---  242 (480)
Q Consensus       168 ~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---  242 (480)
                      + .|++..++++.+...+...|.   .+..++.+.  ++.+|.+.++....+.      ++++++++|+||||.+.+   
T Consensus       113 d-~vlv~~P~y~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~nP~NPTG~~~s~~~  182 (375)
T d1o4sa_         113 D-EVIVFSPVWVSYIPQIILAGG---TVNVVETFMSKNFQPSLEEVEGLLVGK------TKAVLINSPNNPTGVVYRREF  182 (375)
T ss_dssp             C-EEEEEESCCTTHHHHHHHTTC---EEEEEECCGGGTTCCCHHHHHHTCCTT------EEEEEEESSCTTTCCCCCHHH
T ss_pred             C-EEEEccCccccchhhhhcccc---ccccccccccccccchhHHHHHhhccC------ccEEEEeCCCCCccCCCCHHH
Confidence            6 778888899999888888887   566666654  5677888877665554      889999999999999965   


Q ss_pred             hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCC-cccceEEEEeCchhhHhhhcCCcc
Q psy12303        243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGT-LLQCSTIHFKQDGLLISCNQMSAE  321 (480)
Q Consensus       243 l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~~~~~~~  321 (480)
                      +++|.++|++|+++|+.|++|+...............+...--+++.|++|.++. +..+|+++..+. ...........
T Consensus       183 ~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~-~~~~~~~~~~~  261 (375)
T d1o4sa_         183 LEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEK-VATAVSKIQSH  261 (375)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHH-HHHHHHHHHHH
T ss_pred             HHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCcccccccccccc-chhhhhhhhcc
Confidence            6788888999999999999998765532221110111111234667799999874 478999886543 33322211111


Q ss_pred             cccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEE
Q psy12303        322 YLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVS  401 (480)
Q Consensus       322 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~  401 (480)
                      ....                     ............+ ........+...+..+.+.+.|++  .|+++. +|+.+.++
T Consensus       262 ~~~~---------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~l~~--~g~~~~-~p~gg~f~  316 (375)
T d1o4sa_         262 TTSC---------------------INTVAQYAALKAL-EVDNSYMVQTFKERKNFVVERLKK--MGVKFV-EPEGAFYL  316 (375)
T ss_dssp             HTCS---------------------CCHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHHHH--TTCCCC-CCSBSSEE
T ss_pred             cccc---------------------ccccchhhhhhhc-ccchhhhHHHHHHHHHHHHHHHHh--cCceEe-cCCccEEE
Confidence            0000                     1122222222222 223344556677778888899988  688874 67777776


Q ss_pred             EEeecCccCCCchhhHHHHhhhhhHHHHHHHH-hcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        402 FWYLPTRVRNMPHEKRLNILGEITPILKGRMM-QAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       402 f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      |...+..                ..++..++. +.|+++++. ...+.++++|+++.   ++++++++.+++|+++++
T Consensus       317 ~~~~~~~----------------~~~~~~~ll~~~gV~v~pG-~~F~~~g~iRis~~---~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         317 FFKVRGD----------------DVKFCERLLEEKKVALVPG-SAFLKPGFVRLSFA---TSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             EEECSSC----------------HHHHHHHHHHHHCEECEEG-GGGTCTTEEEEECC---SCHHHHHHHHHHHHHHHT
T ss_pred             EEECCCC----------------HHHHHHHHHHhCCEEEEEc-cccCCCCeEEEEEc---CCHHHHHHHHHHHHHHhc
Confidence            6443321                123344444 557554443 33344789999943   479999999999999875

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=3.2e-21  Score=185.12  Aligned_cols=286  Identities=11%  Similarity=0.074  Sum_probs=196.7

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCe
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNC  195 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v  195 (480)
                      ++++++++++|.+++++++|+|+++++..++.+..+              ||+.+|+++.++++.+...++..|.   ++
T Consensus        60 ~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~--------------pgd~~Vl~~~P~y~~~~~~~~~~g~---~v  122 (354)
T d1fg7a_          60 AVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCE--------------PGKDAILYCPPTYGMYSVSAETIGV---EC  122 (354)
T ss_dssp             HHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCC--------------TTTCEEEECSSSCTHHHHHHHHHTC---EE
T ss_pred             HHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhc--------------cccccccccccccccchhhhhccCc---ee
Confidence            578889999999999999999999999999988754              5666788999999999999999998   88


Q ss_pred             EEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHH--HcCcEEEeeccccccccccccc
Q psy12303        196 VEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQ--KYNMWLHVDAAWGGGLLLSKKY  273 (480)
Q Consensus       196 ~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~--~~~~~l~vD~a~~~~~~~~~~~  273 (480)
                      +.++.++++.+|++++++++. .      +++|++++++||+|.+.+-+++..++.  +++.++++|++|..+...... 
T Consensus       123 ~~~~~~~~~~~d~~~l~~~~~-~------~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~-  194 (354)
T d1fg7a_         123 RTVPTLDNWQLDLQGISDKLD-G------VKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASL-  194 (354)
T ss_dssp             EECCCCTTSCCCHHHHHTSCT-T------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCS-
T ss_pred             eccccccccccchhhhhhccc-c------cceeeccCCCccceeEeeecccccccccccccccccccccchhhcccccc-
Confidence            889998899999999987663 2      899999999999999977544443332  356778888887654321111 


Q ss_pred             cCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHH
Q psy12303        274 RHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL  352 (480)
Q Consensus       274 ~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~  352 (480)
                       . .......--++..|++|.++.| ..+|+++. +++.+........++.                       ......
T Consensus       195 -~-~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~-~~~~i~~l~~~~~~~~-----------------------~~~~~~  248 (354)
T d1fg7a_         195 -A-GWLAEYPHLAILRTLSKAFALAGLRCGFTLA-NEEVINLLMKVIAPYP-----------------------LSTPVA  248 (354)
T ss_dssp             -G-GGTTTCTTEEEEEESSSTTCCGGGCCEEEEE-CHHHHHHHHHHSCSSC-----------------------SCHHHH
T ss_pred             -c-hhhcccccceEEeCCccccCCCccccccccc-cchhhhhhhhhcCccc-----------------------hhhHHH
Confidence             1 1111112335567999999844 78999875 5555544332222221                       111122


Q ss_pred             HHHHHHhc---HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHH
Q psy12303        353 WLQWRAKG---DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILK  429 (480)
Q Consensus       353 ~~~l~~~g---~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~  429 (480)
                      ..+...+.   .......+++..+.++++.+.+.+ ++++..+. |..++++|...+.                 ..++.
T Consensus       249 ~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~-~~~~~~~~-p~~~~f~~~~~~~-----------------~~~~~  309 (354)
T d1fg7a_         249 DIAAQALSPQGIVAMRERVAQIIAEREYLIAALKE-IPCVEQVF-DSETNYILARFKA-----------------SSAVF  309 (354)
T ss_dssp             HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTEEEEC-CCSSSEEEEEETT-----------------HHHHH
T ss_pred             HHHHHHHhhhccccccccchhhhhHHHHHHHHHHh-CCCcceeC-CCCceEEEEeCCC-----------------HHHHH
Confidence            22222222   233455666777888899999999 88876554 4444444432221                 23577


Q ss_pred             HHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        430 GRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       430 ~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                      +.|.++|+++.......+..+++|+++.    |++++++++++|+.
T Consensus       310 ~~L~~~gIlvr~~~~~~~~~~~lRisig----t~ee~~~~l~aLka  351 (354)
T d1fg7a_         310 KSLWDQGIILRDQNKQPSLSGCLRITVG----TREESQRVIDALRA  351 (354)
T ss_dssp             HHHHHTTEECEECTTSTTCTTEEEEECC----CHHHHHHHHHHHHT
T ss_pred             HHHHHCCcEEecCCCCCCCCCEEEEEeC----CHHHHHHHHHHHhh
Confidence            8888999665554444444689999943    78999999999974

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=3.6e-21  Score=183.22  Aligned_cols=313  Identities=11%  Similarity=-0.024  Sum_probs=202.7

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchh--HHHH
Q psy12303        107 APVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS--VRSC  184 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s--~~~~  184 (480)
                      ++.+.++.+++++.++++++.+...+++++|||.++..++.....              ||+ .+++....+++  +...
T Consensus        28 ~~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~--------------~g~-~vlv~~~G~f~~~~~~~   92 (348)
T d1iuga_          28 TEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFA--------------PGE-RVLVPVYGKFSERFYEI   92 (348)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCC--------------TTC-EEEEEECSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhccc--------------ccc-cceeecchHHHHHHHHH
Confidence            566778888999999999999777788999999999888877643              345 44444445555  4444


Q ss_pred             HHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcC--cEEEeecc
Q psy12303        185 AAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYN--MWLHVDAA  262 (480)
Q Consensus       185 ~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~--~~l~vD~a  262 (480)
                      ++.+|.   ++..++.+.....++++..         ...+..|++++..|.+|.+.|+++|.++|++|+  .++++|++
T Consensus        93 a~~~~~---~~~~~~~~~g~~~~~~~~~---------~~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDav  160 (348)
T d1iuga_          93 ALEAGL---VVERLDYPYGDTPRPEDVA---------KEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMV  160 (348)
T ss_dssp             HHHTTC---EEEEEECCTTCCCCTTTSC---------CSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECT
T ss_pred             HHhcCc---ccccccccCCCcccccccc---------ccCCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhh
Confidence            555565   5666665544334433321         233778999999999999999999999999985  79999999


Q ss_pred             ccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcccc
Q psy12303        263 WGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQ  342 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  342 (480)
                      ++.+..+.+...+       ++|+++++.||++++|.|+|+++++++. ++.... ...|+...... . ....+  ...
T Consensus       161 ss~g~~~i~~d~~-------~iD~~~~~sqK~l~gppG~~~v~~s~~~-le~~~~-~~~~~dl~~~~-~-~~~~~--~~~  227 (348)
T d1iuga_         161 TSLLVGEVALEAM-------GVDAAASGSQKGLMCPPGLGFVALSPRA-LERLKP-RGYYLDLAREL-K-AQKEG--ESA  227 (348)
T ss_dssp             TTBTTBCCCSGGG-------TCSEEEEESSSTTCCCSCEEEEEECHHH-HHTCCC-CSSTTCHHHHH-H-HHTTT--CCS
T ss_pred             hcccccccccccc-------cCCEEEeccccceecCCceeeeeechHH-Hhhhcc-cccccchhhhh-h-hhccC--ccc
Confidence            9999988888777       8999999999999999999999987653 333321 12222111000 0 00000  011


Q ss_pred             CCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCcee-EEEEEeecCccCCCchhhHHHH
Q psy12303        343 CGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMV-NVSFWYLPTRVRNMPHEKRLNI  420 (480)
Q Consensus       343 ~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~-~v~f~~~~~~~~~~~~~~~~~~  420 (480)
                      .+-+. ...++-.+|+.+-.++ .+..++.....+.+++.+++  .|++...+..+. .++|++ |..+.          
T Consensus       228 ~Tp~v~~i~~l~~aL~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~gl~~~~~~~s~~v~~~~~-P~g~~----------  293 (348)
T d1iuga_         228 WTPAINLVLAVAAVLEEVLPRL-EEHLALKAWQNALLYGVGEE--GGLRPVPKRFSPAVAAFYL-PEGVP----------  293 (348)
T ss_dssp             SCCCHHHHHHHHHHHHHHGGGH-HHHHHHHHHHHHHHHHHHHH--TTCEESCSSBCTTCEEEEC-CTTCC----------
T ss_pred             ccccchHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhhh--hhhccChhhcCCeEEEEEC-CCCCC----------
Confidence            11111 2223334444432233 34444445455566666666  688876443332 345543 43322          


Q ss_pred             hhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        421 LGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       421 l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                          ..++.+.|.+.|. .+..+...-....+|++ .....+.+||+++++.|++++++
T Consensus       294 ----~~~~~~~l~~~gi-~i~~G~~~l~~~~~RIg-~mG~~~~~d~~~~~~~l~~~l~~  346 (348)
T d1iuga_         294 ----YARVKEAFAQRGA-VIAGGQGPLKGKVFRLS-LMGAYDRYEALGVAGMFREVLEE  346 (348)
T ss_dssp             ----HHHHHHHHHTTTE-ECEECCGGGTTTEEEEC-CCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHCCe-EEEcCccccCCCEEEEe-CCCCCCHHHHHHHHHHHHHHHHH
Confidence                2456778888884 44432211113589999 44567899999999999998875

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=2e-20  Score=182.69  Aligned_cols=392  Identities=16%  Similarity=0.084  Sum_probs=248.7

Q ss_pred             HHHHHhcCCCCCCCCCCHHHHHHHHHhhccCCccC-CCCCccccccCCCChHHhHHHHHHHHcC-cCCcch-hcChhhHH
Q psy12303         36 AEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRT-GHPMFMNQLSCGLDVVSMAGEWLIATAN-TNMFTY-EIAPVFIL  112 (480)
Q Consensus        36 ~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~-~~~~~~~~  112 (480)
                      ++++...+.++|  +.+..++++.++++...+... .+..+++.. .....+++. +.+.+++. -.++.. +.+.+.-+
T Consensus        31 ~~~~~~~~l~LP--~~sE~El~r~~~~la~kN~~~~~~~~~lG~~-~~hy~P~v~-~~~~~~~TaYTPYQPaEiSQG~LQ  106 (471)
T d1wyub1          31 KEHLREVPPRLP--EVDELTLVRHYTGLSRRQVGVDTTFYPLGSC-TMKYNPKLH-EEAARLFADLHPYQDPRTAQGALR  106 (471)
T ss_dssp             GGGBCSSCCCCC--CCCHHHHHHHHHHHHTTCCCTTTSCCCBTTT-CCCCCCHHH-HHHHHTTSSCCTTSCGGGCHHHHH
T ss_pred             HHHHcCCCCCCC--CCCHHHHHHHHHHHHhCCCCccccccCCccc-cCccCcchh-hhHHHHHhccCCCCCHHHHHHHHH
Confidence            344434456777  379999999999998877643 233333322 112334444 33444432 234452 56888888


Q ss_pred             HHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCC
Q psy12303        113 METVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGT  192 (480)
Q Consensus       113 ~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~  192 (480)
                      .-.+...++++++|++-.+..+..|+|.+-. |+.+++..    .+++|....  ...++.+...|..........+.  
T Consensus       107 alfEfQtmi~eLTGMdvaNaS~yDGatA~ae-A~~ma~r~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--  177 (471)
T d1wyub1         107 LMWELGEYLKALTGMDAITLEPAAGAHGELT-GILIIRAY----HEDRGEGRT--RRVVLVPDSAHGSNPATASMAGY--  177 (471)
T ss_dssp             HHHHHHHHHHHHHTCSEEECCCSSHHHHHHH-HHHHHHHH----HHHTTCTTT--CCEEEEETTSCTHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHhCCCccccccchHHHHHHH-HHHHHHHH----hhhcccccc--cccccCCcccccceeeeeecccc--
Confidence            8888999999999999877778888775433 33333321    111222111  22455666666666666666665  


Q ss_pred             CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccccc-ccc
Q psy12303        193 DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLL-LSK  271 (480)
Q Consensus       193 ~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~-~~~  271 (480)
                       .++.++.+..+..+.+.+++...++      +.+++++.+++.-+..++.+++.+++++++..+++|.+...... ..+
T Consensus       178 -~~~~~~~~~~~~~~~~~~~~~~~~~------~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~  250 (471)
T d1wyub1         178 -QVREIPSGPEGEVDLEALKRELGPH------VAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWAR  250 (471)
T ss_dssp             -EEEEECBCTTSSBCHHHHHHHCSTT------EEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCC
T ss_pred             -eeecccccccccccchhhhhhhhcc------ccceeeccCCCcccccchhhhhHHHHHhccccccccccchhhhhhccc
Confidence             7778888888889999888877665      88999999966544445699999999999999999987554433 222


Q ss_pred             cccCcccCCCCCCccceeCccccCCCcc-----cceEEEEeCchhhHhhhcCCcccccccccccC-----cccCCCCccc
Q psy12303        272 KYRHPRLTGIERADSVTWNPHKLMGTLL-----QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYD-----VRYDTGDKVI  341 (480)
Q Consensus       272 ~~~~~~~~~~~~~D~~~~s~hK~~~~p~-----~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~  341 (480)
                      ....       ++|.++...|+.++.|.     ++|++.++++ +.+.    .|..+........     ..-.++....
T Consensus       251 p~~~-------g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~-~~R~----~PGRiV~~~~~~~~~~~~REqhIrRe~a  318 (471)
T d1wyub1         251 PGDM-------GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH-LAPY----LPVPLVERGEEGFYLDFDRPKSIGRVRS  318 (471)
T ss_dssp             HHHH-------TCSEEECCTTTTTCCCCTTSCCCCCCEEECGG-GGGG----CCSCEEEECSSCEEEECCCTTCCCCSSS
T ss_pred             cCcc-------cccccccccccccccccccccccccceeehhh-hhcc----CCCceecCCCccccccCCCcccccchhh
Confidence            2122       78888888888877763     3566665543 3322    2222221111100     0001111111


Q ss_pred             cCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-CceeEEEEEeecCccCCCchhhHHH
Q psy12303        342 QCGRH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-PEMVNVSFWYLPTRVRNMPHEKRLN  419 (480)
Q Consensus       342 ~~~r~-~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~  419 (480)
                       |+.. ..++.++..+..+|.+|+++..+.+..++.|+++.|+.  +|+++..+ |....+++.+ +..+.         
T Consensus       319 -ctnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~--~G~~~~~~~~ff~EFvv~~-~~~~~---------  385 (471)
T d1wyub1         319 -FYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE--KGYRVPYDGPSMHEFVAQP-PEGFR---------  385 (471)
T ss_dssp             -TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCBCSSCSSCCSCEEEBC-STTCC---------
T ss_pred             -hhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh--cCceeccCcceeeEEeecC-CCCCC---------
Confidence             2222 24566777788889999999999999999999999977  89997543 4445554432 21111         


Q ss_pred             HhhhhhHHHHHHHHhcccEEEeeeeeCCc-ccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        420 ILGEITPILKGRMMQAGTMMVGYQPLNDL-PNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       420 ~l~~~~~~i~~~l~~~g~~~~~~~~~~~~-~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                           ..++.++|.+.|..... ..++.. .+.+-+| ....+|++|||+++++|++++++
T Consensus       386 -----~~~i~k~L~~~G~~~~~-~~~p~~~~~~llv~-vTE~~tkedID~lv~aL~~i~~e  439 (471)
T d1wyub1         386 -----ALDLAKGLLELGFHPPT-VYFPLIVKEALMVE-PTETEAKETLEAFAEAMGALLKK  439 (471)
T ss_dssp             -----HHHHHHHHHHTTCCCCE-ESCSTTSTTCEEEC-CCTTSCHHHHHHHHHHHHHHHTS
T ss_pred             -----HHHHHHHHHHcCCCCCc-ccCcCCCCCeEEEe-cCCCCCHHHHHHHHHHHHHHHHh
Confidence                 23567888888853211 122221 5688899 88999999999999999999875

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.88  E-value=5.3e-21  Score=183.67  Aligned_cols=287  Identities=10%  Similarity=0.036  Sum_probs=188.3

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCe
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNC  195 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v  195 (480)
                      ++++++++.+|.++.++++++|+++++..++....               +++..|.  .+.+..+.......+.   .+
T Consensus        61 ~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~~~---------------~~~~~v~--~p~~~~~~~~~~~~~~---~~  120 (355)
T d1lc5a_          61 HLHQALARHHQVPASWILAGNGETESIFTVASGLK---------------PRRAMIV--TPGFAEYGRALAQSGC---EI  120 (355)
T ss_dssp             HHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC---------------CSEEEEE--ESCCTHHHHHHHHTTC---EE
T ss_pred             HHHHHHHHHhCCCHHHEEecccHHHHHHHHHhhhc---------------ccccccc--CCccceeccccccccc---cc
Confidence            46777899999998889999999988776655431               2132333  3455566677777777   67


Q ss_pred             EEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHHcCcEEEeecccccccccc
Q psy12303        196 VEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLS  270 (480)
Q Consensus       196 ~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~  270 (480)
                      +.+|++.  ++.++ +++++++.++      +++|++++|+||||.+.+   +.+|.++|++|++++++|++|..+....
T Consensus       121 ~~v~~~~~~~~~~~-~~~~~~~~~~------~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~  193 (355)
T d1lc5a_         121 RRWSLREADGWQLT-DAILEALTPD------LDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHE  193 (355)
T ss_dssp             EEEECCGGGTTCCC-TTHHHHCCTT------CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTC
T ss_pred             eeeeeeccCCccce-eeeeeccccc------cceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeec
Confidence            7888764  34444 4455554443      889999999999999976   6778888899999999999998754322


Q ss_pred             ccccCcccCCCCCCccceeCccccCCC-cccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCc
Q psy12303        271 KKYRHPRLTGIERADSVTWNPHKLMGT-LLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI  349 (480)
Q Consensus       271 ~~~~~~~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~  349 (480)
                      ....  .......-.+++.|++|+++. +..+|+++..+............++.                       ...
T Consensus       194 ~~~~--~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~~~~~-----------------------~~~  248 (355)
T d1lc5a_         194 TGFI--PALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWS-----------------------VNA  248 (355)
T ss_dssp             CCSG--GGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCTTC-----------------------SCH
T ss_pred             cccc--ccccccccceeecccccccccccccccceeccchhhhHHHHhhcCCcc-----------------------ccc
Confidence            2111  111111334677799999874 47789988765543332221111111                       123


Q ss_pred             hHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHH
Q psy12303        350 FKLWLQWRAK-GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPIL  428 (480)
Q Consensus       350 l~~~~~l~~~-g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i  428 (480)
                      +...++...+ ..+.+.+.+++.++..+++.+.|.+ .+++++.  |..+++.|...+..                ..++
T Consensus       249 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~--p~~~~f~~~~~~~~----------------~~~~  309 (355)
T d1lc5a_         249 LAALAGEVALQDSAWQQATWHWLREEGARFYQALCQ-LPLLTVY--PGRANYLLLRCERE----------------DIDL  309 (355)
T ss_dssp             HHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHT-STTEEEC--CCSSSEEEEEESCT----------------TCCH
T ss_pred             cccccccccccccchhHHHHHHHHHHHHHHHHHHhh-cCCcEEC--CCCCEEEEEECCCC----------------HHHH
Confidence            3444444443 3556777888888899999999999 8899874  44444444322221                1246


Q ss_pred             HHHHHhcccEEEeeeeeCCc-ccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        429 KGRMMQAGTMMVGYQPLNDL-PNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       429 ~~~l~~~g~~~~~~~~~~~~-~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      .++|.++|+++.....+.+. .+++|+++.    +++|+++++++|++++
T Consensus       310 ~~~L~~~gv~vr~~~~f~~~~~~~iRis~~----~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         310 QRRLLTQRILIRSCANYPGLDSRYYRVAIR----SAAQNERLLAALRNVL  355 (355)
T ss_dssp             HHHHHTTTEECEECTTSTTCCTTEEEEECC----CHHHHHHHHHHHHHHC
T ss_pred             HHHHHHCCcEEEeCccCCCCCCCEEEEEeC----CHHHHHHHHHHHHHhC
Confidence            67888898655444333332 579999942    7899999999999874

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.87  E-value=3.2e-21  Score=186.80  Aligned_cols=325  Identities=13%  Similarity=0.069  Sum_probs=205.6

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA  185 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~  185 (480)
                      .+|...++|+.    +++++|.+.  ++++++||.|+..++.++.-+             ||+ +|+++..+|.+...++
T Consensus        29 ~G~~v~~~E~~----la~~~g~~~--ai~~~sgt~Al~~al~al~~~-------------~gd-eVi~~~~~~~~~~~ai   88 (376)
T d1mdoa_          29 TGPKNQELEAA----FCRLTGNQY--AVAVSSATAGMHIALMALGIG-------------EGD-EVITPSMTWVSTLNMI   88 (376)
T ss_dssp             SSHHHHHHHHH----HHHHHCCSE--EEEESCHHHHHHHHHHHTTCC-------------TTC-EEEEESSSCHHHHHHH
T ss_pred             CCHHHHHHHHH----HHHHHCcCe--EEEeCCHHHHHHHHHHHhCCC-------------CCC-EEEEecccccccccch
Confidence            46666666654    999999875  899999999999999875221             556 8999999999999999


Q ss_pred             HHcCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccc
Q psy12303        186 AVCGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWG  264 (480)
Q Consensus       186 ~~~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~  264 (480)
                      ...|.   +.++++++. ++.+|+++|++++++.      |++|++++   ..|...|+++|.++|+++|++++.|+||+
T Consensus        89 ~~~g~---~pv~~d~~~~~~~~d~~~l~~~i~~~------tkaIi~~h---~~G~~~~~~~i~~i~~~~~i~vIeD~a~a  156 (376)
T d1mdoa_          89 VLLGA---NPVMVDVDRDTLMVTPEHIEAAITPQ------TKAIIPVH---YAGAPADLDAIYALGERYGIPVIEDAAHA  156 (376)
T ss_dssp             HHTTC---EEEEECBCTTTCCBCHHHHHHHCCTT------EEEECCBC---GGGCCCCHHHHHHHHHHHTCCBCEECTTC
T ss_pred             hcccc---ceeeecccccccCCCHHHHHHhcCCC------CeEEEEeC---CCCCccchhHHHHHHHhcCceEEeccchh
Confidence            99998   778898886 4789999999999875      89998765   58999999999999999999999999999


Q ss_pred             ccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcc-cCCCCccccC
Q psy12303        265 GGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVR-YDTGDKVIQC  343 (480)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~  343 (480)
                      .+......     ..|..+...+++.++|.+.+ ...|++++++..+...................... ..........
T Consensus       157 ~g~~~~~~-----~~g~~g~~~~Sf~~~K~l~~-g~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  230 (376)
T d1mdoa_         157 TGTSYKGR-----HIGARGTAIFSFHAIKNITC-AEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAP  230 (376)
T ss_dssp             TTCEETTE-----ETTSSSEEEEECCTTSSSCS-SSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSC
T ss_pred             ccCeeCCe-----ecccccCccccCCCcCCCCC-CCCCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhc
Confidence            88654322     11222455677778899986 44577888877655443221111110000000000 0000000111


Q ss_pred             CCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhh
Q psy12303        344 GRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGE  423 (480)
Q Consensus       344 ~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~  423 (480)
                      +.......+-+++.......+++.+++..++++++.+.|.+ .+...+..........+......+.     ......+ 
T Consensus       231 g~n~~~~~~~Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-  303 (376)
T d1mdoa_         231 GYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMAD-LPFQPLSLPSWEHIHAWHLFIIRVD-----EARCGIT-  303 (376)
T ss_dssp             CCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT-SSCEECCCCSSCEECCCSCEEEECC-----HHHHSSC-
T ss_pred             ccccccchhhhhhhhhhhhhhhHHHHHHhhhhhhhhhhccc-ccccccccccccccccccccccccc-----cccchhh-
Confidence            22222222223333233566788889999999999999999 7776654322211111100000000     0000000 


Q ss_pred             hhHHHHHHHHhcccEEEe-eeee-----------CC--------cccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        424 ITPILKGRMMQAGTMMVG-YQPL-----------ND--------LPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       424 ~~~~i~~~l~~~g~~~~~-~~~~-----------~~--------~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                       ..++.+.|.+.|+-... +.+.           .+        ....+.+. +++..|++||+++++.|++++
T Consensus       304 -Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP-~~~~lt~~ei~~I~~~i~~i~  375 (376)
T d1mdoa_         304 -RDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLP-LFPDMTESDFDRVITALHQIA  375 (376)
T ss_dssp             -HHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEEC-CCTTCCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEcc-CCCCCCHHHHHHHHHHHHHHh
Confidence             13566777777743210 0000           00        03458887 788999999999999999875

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.86  E-value=1.6e-20  Score=184.26  Aligned_cols=339  Identities=12%  Similarity=0.057  Sum_probs=216.7

Q ss_pred             hHHHHHHHHcCcC---CcchhcChhhHHHHHHHHHHHHHHhCCC---CCCeEECCChhHHHHHHHHHHHHhcCchhHhcC
Q psy12303         88 MAGEWLIATANTN---MFTYEIAPVFILMETVVLEKMRQIIGWQ---GGDSILAPGGSISNLYAFLAARHKMFPTYKEKG  161 (480)
Q Consensus        88 ~~~~~l~~~~~~~---~~~~~~~~~~~~~e~~~~~~la~~~g~~---~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g  161 (480)
                      .+.+.+...+...   ...|....+..++.+.+++|+.+.+|.+   .+++++|+|+++|+..++.+..+          
T Consensus        43 ~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~----------  112 (418)
T d2r5ea1          43 YALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVD----------  112 (418)
T ss_dssp             HHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCC----------
T ss_pred             HHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhccc----------
Confidence            3445555544322   2346666778899999999999999874   36899999999999999988865          


Q ss_pred             CCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCC----------CCCCHHHHHHHHHHHHHCCCccEEEEec
Q psy12303        162 LSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKR----------GRLIPSELERLVLERKAKGDIPFFVNCT  231 (480)
Q Consensus       162 ~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~----------~~~d~~~L~~~i~~~~~~~~~~~~v~~~  231 (480)
                          ||+ .|+++.+.|+.+...+...|.   +++.|+++.+          +..+.+++.+.....      +++++++
T Consensus       113 ----~gd-~vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~  178 (418)
T d2r5ea1         113 ----EGD-EVIIIEPFFDCYEPMVKAAGG---IPRFIPLKPNKTGGTISSADWVLDNNELEALFNEK------TKMIIIN  178 (418)
T ss_dssp             ----TTC-EEEEEESCCTTHHHHHHHTTC---EEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTT------EEEEEEE
T ss_pred             ----ccc-ceeccccccchhhHHHHHcCC---eEEEEEecccccccchhhhhhhhhHHHHhhhhhcc------ccceecC
Confidence                556 788889999999999999988   7788887543          346777776665544      8999999


Q ss_pred             cCCCccccccC---hHHHHHHHHHcCcEEEeeccccccccccccccC-cccCCCCCCccceeCccccCCCc-ccceEEEE
Q psy12303        232 SGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH-PRLTGIERADSVTWNPHKLMGTL-LQCSTIHF  306 (480)
Q Consensus       232 ~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~  306 (480)
                      +++||||.+.+   +++|+++|++|+++++.|++|............ ..+.+...--+++.|+.|.++.| ..+|+++.
T Consensus       179 ~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~  258 (418)
T d2r5ea1         179 TPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYG  258 (418)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEES
T ss_pred             CcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCcccccccc
Confidence            99999999966   677888999999999999999876653221111 01122112224556889998744 78999886


Q ss_pred             eCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHH------hcHHHHHHHHHHHHHHHHHHHH
Q psy12303        307 KQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA------KGDEGFEKQIDRLMELAEYMVK  380 (480)
Q Consensus       307 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~------~g~~~~~~~~~~~~~l~~~l~~  380 (480)
                      .+ ..+.............                 ++. ....++...+..      ...+.+.++.++....++.+.+
T Consensus       259 ~~-~~i~~~~~~~~~~~~~-----------------~~~-~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~  319 (418)
T d2r5ea1         259 PE-ALLKNLQMVHQNCVYT-----------------CAT-PIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMAS  319 (418)
T ss_dssp             CH-HHHHHHHHHHTTTTCS-----------------CCH-HHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred             cc-hhhhhhhhcccccccc-----------------ccc-chhhhccccccccccccccchhhHHHHHHHHHHhhhhHHh
Confidence            44 4433322111000000                 000 000111111111      1234567777888889999999


Q ss_pred             HHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhc-ccEEEeeeeeCC-------cccEE
Q psy12303        381 KIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQA-GTMMVGYQPLND-------LPNFF  452 (480)
Q Consensus       381 ~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~-g~~~~~~~~~~~-------~~~~~  452 (480)
                      .|++  .|+++. .|+.+.++|.-.+.-.............  ...++.+.|.++ | +.+.++...+       ..+++
T Consensus       320 ~L~~--~g~~~~-~P~gg~f~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~g-V~v~PG~~F~~~~~~~~g~~~i  393 (418)
T d2r5ea1         320 FLAE--VGMNPT-VPQGGYFMVADWSSLDSKVDLTQETDAR--KDYRFTKWMTKSVG-LQGIPPSAFYSEPNKHLGEDFV  393 (418)
T ss_dssp             HHHH--TTCEEE-ECSBSSEEEEECGGGSTTCCGGGCCCSS--HHHHHHHHHHHHHS-EECBCGGGGSCGGGHHHHTTEE
T ss_pred             hHhh--cCCccc-CCCceeEEEEEcccccccccchhccccc--CHHHHHHHHHHHCC-EEEeCchhhCCCCCccCCCCEE
Confidence            9999  588874 6888887775433211111100000000  023455666554 6 4444332211       03689


Q ss_pred             EEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        453 RNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       453 R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      |+|+.   .++++|++.+++|++++.
T Consensus       394 Ris~~---~~~e~l~~a~~rl~~~lg  416 (418)
T d2r5ea1         394 RYCFF---KKDENLQKAAEILRKWKG  416 (418)
T ss_dssp             EEECC---SCHHHHHHHHHHHHHHHT
T ss_pred             EEEec---CCHHHHHHHHHHHHHHHc
Confidence            99953   478999999999999864

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.7e-20  Score=181.90  Aligned_cols=327  Identities=12%  Similarity=0.048  Sum_probs=218.5

Q ss_pred             hHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCC--C-CCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCc
Q psy12303         88 MAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQ--G-GDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSA  164 (480)
Q Consensus        88 ~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~--~-~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~  164 (480)
                      .+.+.+...+......|....+..++.+.+.+++.+.+|.+  + .++++|+|+++++..++++..+             
T Consensus        43 ~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~-------------  109 (382)
T d1u08a_          43 YLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVR-------------  109 (382)
T ss_dssp             HHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCC-------------
T ss_pred             HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhccc-------------
Confidence            44466666566666678778888899999999999999874  3 3599999999999999988765             


Q ss_pred             cCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC-
Q psy12303        165 IKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP-  242 (480)
Q Consensus       165 ~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~-  242 (480)
                       +|+ .|+++.+.++.+...+...|.   .+..++.++ .+.+|+++++++++++      ++++++++|+||||.+.+ 
T Consensus       110 -~gd-~vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~l~~P~NPtG~v~~~  178 (382)
T d1u08a_         110 -NGD-EVICFDPSYDSYAPAIALSGG---IVKRMALQPPHFRVDWQEFAALLSER------TRLVILNTPHNPSATVWQQ  178 (382)
T ss_dssp             -TTC-EEEEEESCCTTHHHHHHHTTC---EEEEEECCTTTCCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCH
T ss_pred             -ccc-eEEEecccccchhhhhhhccc---cceecccccccccCCHHHHhhhhccC------ccEEEECCCCccccccccc
Confidence             446 788888899999999999987   667777765 4678999998877765      899999999999999976 


Q ss_pred             --hHHHHHHHHHcCcEEEeeccccccccccccccCcc-cCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcC
Q psy12303        243 --IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPR-LTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQM  318 (480)
Q Consensus       243 --l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~  318 (480)
                        +++|.++|++++++++.|+.|............+. ......--++..++.|.++.| ..+|+++. +..........
T Consensus       179 ~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~-~~~~~~~~~~~  257 (382)
T d1u08a_         179 ADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVA-PAPISAEIRKV  257 (382)
T ss_dssp             HHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEEC-CHHHHHHHHHH
T ss_pred             ccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhhc-cchhHHHHHhh
Confidence              56777778899999999999887654322211100 000001225666788887755 78999886 44444332111


Q ss_pred             CcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCcee
Q psy12303        319 SAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMV  398 (480)
Q Consensus       319 ~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~  398 (480)
                      . .....                 +.......++...+.. +.+.+.++.++..+.++.+.+.+..  .|+.+ .+|+++
T Consensus       258 ~-~~~~~-----------------~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~-~~p~gg  315 (382)
T d1u08a_         258 H-QYLTF-----------------SVNTPAQLALADMLRA-EPEHYLALPDFYRQKRDILVNALNE--SRLEI-LPCEGT  315 (382)
T ss_dssp             H-HHHTS-----------------SCCHHHHHHHHHHHHH-CTHHHHTHHHHHHHHHHHHHHHTTS--SSCEE-CCCCBS
T ss_pred             h-ccccc-----------------cccccccccccccccc-chHHHHHHHHHHHhhhhhhhhhhcc--CCcEE-ecCCce
Confidence            0 00000                 0000112222333332 4567788888888899999988877  78987 468888


Q ss_pred             EEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh-cccEEEeeeeeC---CcccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        399 NVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ-AGTMMVGYQPLN---DLPNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       399 ~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~-~g~~~~~~~~~~---~~~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                      .++|.-.+.. ...+           ..++.++|.+ .|+++++...+.   ...+++|+|+.   .+++++++.+++|+
T Consensus       316 ~~~~~~~~~~-~~~d-----------~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~---~~~e~l~~al~RL~  380 (382)
T d1u08a_         316 YFLLVDYSAV-STLD-----------DVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA---KKESTLLAAAERLR  380 (382)
T ss_dssp             SEEEEECTTT-CCSC-----------HHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC---SCHHHHHHHHHHHT
T ss_pred             EEEEEecCCC-CCCC-----------HHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEe---CCHHHHHHHHHHHh
Confidence            7776544321 1111           1345555544 565444332221   11579999953   47899999999887


Q ss_pred             Hh
Q psy12303        475 RL  476 (480)
Q Consensus       475 ~~  476 (480)
                      ++
T Consensus       381 ~l  382 (382)
T d1u08a_         381 QL  382 (382)
T ss_dssp             TC
T ss_pred             CC
Confidence            64

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=1.2e-20  Score=183.65  Aligned_cols=322  Identities=13%  Similarity=0.112  Sum_probs=212.5

Q ss_pred             HHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccC
Q psy12303         89 AGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIK  166 (480)
Q Consensus        89 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~  166 (480)
                      +.+.+.+.. .....|....+..++.+.+++++.+..|.  +++++++|+|+++++..++.+..+              |
T Consensus        46 ~~~al~~~~-~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~~--------------~  110 (389)
T d2gb3a1          46 FFERIYENK-PEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIAN--------------P  110 (389)
T ss_dssp             HHHHHHHTC-CSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCC--------------T
T ss_pred             HHHHHHhcC-CCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEeccccccccccccccccc--------------C
Confidence            335555543 33456766777789999999999998886  567899999999999988887764              4


Q ss_pred             CceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCC-CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---
Q psy12303        167 GQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKR-GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---  242 (480)
Q Consensus       167 g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~-~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---  242 (480)
                      |+ .|++..+.++.+...+...|.   .++.++.+.+ +..+.+.+.+.+.+.      ++++++++|+||||.+.+   
T Consensus       111 gd-~V~i~~P~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~nP~NPtG~~~s~~~  180 (389)
T d2gb3a1         111 GD-EILVLEPFYANYNAFAKIAGV---KLIPVTRRMEEGFAIPQNLESFINER------TKGIVLSNPCNPTGVVYGKDE  180 (389)
T ss_dssp             TC-EEEEEESCCTHHHHHHHHHTC---EEEEEECCGGGTSCCCTTGGGGCCTT------EEEEEEESSCTTTCCCCCHHH
T ss_pred             CC-eEEEeCCCCccccccccccCc---cccccccccccccchhhhhhhhcccC------ccEEEeCCCCccccccchHHH
Confidence            45 788888899999999999998   7778888754 444444455444443      899999999999999865   


Q ss_pred             hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcc
Q psy12303        243 IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAE  321 (480)
Q Consensus       243 l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~  321 (480)
                      +++|.++|++|+++++.|++|+..........  .......-..++.++.|.++.| ..+|+++..+.............
T Consensus       181 ~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~--~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~~~~~  258 (389)
T d2gb3a1         181 MRYLVEIAERHGLFLIVDEVYSEIVFRGEFAS--ALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQG  258 (389)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTCBCSSCCCC--GGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccCCEEEEEecccccccccccccc--ccccccccccccccccccccCcccceeeeeccchhHHHHHhhhhhc
Confidence            78899999999999999999987655332211  1222223345556777777665 78999987665443322211111


Q ss_pred             cccccccccCcccCCCCccccCCCCCCchHHHHHHHH--hcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeE
Q psy12303        322 YLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA--KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVN  399 (480)
Q Consensus       322 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~--~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~  399 (480)
                      +..                      ...+...++...  ...+.+++..++..+.++.+.+.|++ + ++.....|..+.
T Consensus       259 ~~~----------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~~p~~g~  314 (389)
T d2gb3a1         259 RLA----------------------PPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEE-H-GLKRFTKPSGAF  314 (389)
T ss_dssp             SCC----------------------CCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCBCCCSBSS
T ss_pred             ccc----------------------ccccccccccccccccchhcccccccccccchhhhhhhhh-h-ccccccCCCceE
Confidence            110                      011122222222  24567788888899999999999999 5 444345677777


Q ss_pred             EEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHh------cccEEEeeeeeC---Cc-ccEEEEecccCCCCHHHHHHH
Q psy12303        400 VSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQ------AGTMMVGYQPLN---DL-PNFFRNIISSAAVTEGDIDFL  469 (480)
Q Consensus       400 v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~------~g~~~~~~~~~~---~~-~~~~R~~~~~~~~t~~di~~~  469 (480)
                      ++|.-.|..    +.           .++.++|.+      .|+.++....+.   +. .+++|+++.   .+++++++.
T Consensus       315 ~~~~~lp~~----~~-----------~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~---~~~~~l~~a  376 (389)
T d2gb3a1         315 YITAELPVE----DA-----------EEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV---LEKDLLSRA  376 (389)
T ss_dssp             EEEEECSSS----CH-----------HHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC---SCHHHHHHH
T ss_pred             EEEEeCCCC----CH-----------HHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEc---CCHHHHHHH
Confidence            766544322    11           233344433      343333322111   11 579999943   578999998


Q ss_pred             HHHHHHhhcc
Q psy12303        470 LTEMDRLGHD  479 (480)
Q Consensus       470 ~~~l~~~~~~  479 (480)
                      +++|++.+++
T Consensus       377 ~~~L~~~lk~  386 (389)
T d2gb3a1         377 IDVLMEGLKM  386 (389)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9888887764

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.85  E-value=2.1e-20  Score=176.53  Aligned_cols=329  Identities=16%  Similarity=0.128  Sum_probs=193.9

Q ss_pred             ccCCCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhH
Q psy12303         79 LSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYK  158 (480)
Q Consensus        79 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~  158 (480)
                      .+.+.. |.++ +.+..........|.    ..+..+++++.+++++|.++.+++||+|||+||..++..+..       
T Consensus         8 ~~~g~~-P~v~-eAl~~~~~~~~~~y~----~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~-------   74 (340)
T d1svva_           8 YSVGMH-PKIL-DLMARDNMTQHAGYG----QDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR-------   74 (340)
T ss_dssp             CSSCCC-HHHH-HHHHHHTTCCCCSTT----CSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC-------
T ss_pred             CCCCCC-HHHH-HHHHHHhhcCCCCCC----CCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhh-------
Confidence            344444 4455 444443333333343    235566789999999999988999999999999999987754       


Q ss_pred             hcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccc
Q psy12303        159 EKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG  238 (480)
Q Consensus       159 ~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G  238 (480)
                             +++ .++.....|.++.......+.+. ....+.. .....+.+....+..........+..+++....++.|
T Consensus        75 -------~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (340)
T d1svva_          75 -------PWE-AVIATQLGHISTHETGAIEATGH-KVVTAPC-PDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVG  144 (340)
T ss_dssp             -------TTE-EEEEETTSHHHHSSTTHHHHTTC-CEEEECC-TTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTS
T ss_pred             -------hcc-ccccccccceeeeecccccccce-eeeeccc-ccccccchhHHHHhhhhhcccCCcceeeeeccccccc
Confidence                   324 66777778887765554444332 2222222 2334455555555544333333344455555556666


Q ss_pred             ccc---ChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhh
Q psy12303        239 AFD---PIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISC  315 (480)
Q Consensus       239 ~~~---~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~  315 (480)
                      .+.   ++..+.++|+++|.++|+|++++++....+....+........++...++.|.++.+  .+.............
T Consensus       145 ~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  222 (340)
T d1svva_         145 TQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMF--GEALIILNDALKPNA  222 (340)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSS--CEEEEECSGGGCTTH
T ss_pred             ccccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccc--cccccccchhhhhhh
Confidence            664   467778999999999999999988776554432200000012344555555555442  333333333222111


Q ss_pred             hcCCcccccccccccCcccCCCCccccCCCCCCchHHHHH-HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC
Q psy12303        316 NQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQ-WRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE  394 (480)
Q Consensus       316 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~-l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~  394 (480)
                      .... .+.                   .+.......++++ +..+.........++...++.++.+.|++  +|++++.+
T Consensus       223 ~~~~-~~~-------------------~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~~p  280 (340)
T d1svva_         223 RHLI-KQR-------------------GALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEA--CGIRLAWP  280 (340)
T ss_dssp             HHHH-HHT-------------------TCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHH--TTCCBSSC
T ss_pred             hhhc-ccc-------------------cCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhc--CCCeeecC
Confidence            0000 000                   0001112222222 23344556677788889999999999999  79998766


Q ss_pred             CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHH
Q psy12303        395 PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMD  474 (480)
Q Consensus       395 ~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~  474 (480)
                      +..+.+ |...+                   ......|.+++..........+ .+++|+| +++.+|++|||+++++|+
T Consensus       281 ~~~~~v-~~~~~-------------------~~~~~~l~~~~~~~~~~~~~~~-~~~vR~s-~~~~~t~edid~~l~~l~  338 (340)
T d1svva_         281 SASNQL-FPILE-------------------NTMIAELNNDFDMYTVEPLKDG-TCIMRLC-TSWATEEKECHRFVEVLK  338 (340)
T ss_dssp             CSSSEE-CBEEE-------------------HHHHHHHTTTEECEEEEEETTT-EEEEEEE-CCTTCCHHHHHHHHHHHH
T ss_pred             CCceEE-EEeCC-------------------HHHHHHHHHhhhhhcccccCCC-CcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence            555544 43222                   1234556666654444444445 7899999 899999999999999998


Q ss_pred             Hh
Q psy12303        475 RL  476 (480)
Q Consensus       475 ~~  476 (480)
                      ++
T Consensus       339 ~l  340 (340)
T d1svva_         339 RL  340 (340)
T ss_dssp             HC
T ss_pred             cC
Confidence            74

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=3.1e-21  Score=183.68  Aligned_cols=311  Identities=14%  Similarity=0.115  Sum_probs=183.9

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhH
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV  181 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~  181 (480)
                      ..|...|...++|++    +++++|.+.  +++++|||+||+.++.+++.              +|+ .+++....|+++
T Consensus        28 ~~yg~~p~~~~le~~----lA~~~G~~~--~~~~~sGt~A~~~al~a~~~--------------~g~-~~~~~~~~~~~~   86 (343)
T d1m6sa_          28 DVYGEDPTINELERL----AAETFGKEA--ALFVPSGTMGNQVSIMAHTQ--------------RGD-EVILEADSHIFW   86 (343)
T ss_dssp             GGGTCCHHHHHHHHH----HHHHTTCSE--EEEESCHHHHHHHHHHHHCC--------------TTC-EEEEETTCHHHH
T ss_pred             cccCCCHHHHHHHHH----HHHHHCCCe--EEEeCCHHHHHHHHHHHHhc--------------cCC-ceecccccccee
Confidence            446667777766655    888999875  89999999999999988765              335 666667787776


Q ss_pred             HHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEecc-CCCcccccc---ChHHHHHHHHHcCcEE
Q psy12303        182 RSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTS-GTTVLGAFD---PIEEIADICQKYNMWL  257 (480)
Q Consensus       182 ~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~-~~~~~G~~~---~l~~I~~i~~~~~~~l  257 (480)
                      .......+.....+..++. ..+..|++.+++.+.....+...+..++.+. .+++.|.+.   ++++|.++|++||+++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~  165 (343)
T d1m6sa_          87 YEVGAMAVLSGVMPHPVPG-KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINV  165 (343)
T ss_dssp             SSTTHHHHHTCCEEEEECE-ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEE
T ss_pred             eecccccccccceeecccc-ccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEE
Confidence            5544433322213333433 3567899999999987665555565555554 445555554   4677888889999999


Q ss_pred             EeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCC
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  337 (480)
                      |+|++++++.........  .......+..+++.+|..++..+ +.+. ...+...........+...            
T Consensus       166 ~~D~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~-~~~~-~~~~~~~~~~~~~~~~~~~------------  229 (343)
T d1m6sa_         166 HIDGARIFNASIASGVPV--KEYAGYADSVMFCLSKGLCAPVG-SVVV-GDRDFIERARKARKMLGGG------------  229 (343)
T ss_dssp             EEEETTHHHHHHHHCCCH--HHHHHTCSEEEEESSSTTCCSSC-EEEE-ECHHHHHHHHHHHHHHTCC------------
T ss_pred             Eeccccccccccccccch--hhhcccccccccccccccccccc-cccc-ccHHHHhhhHhhCcccccc------------
Confidence            999999887653322111  11111445666777777665443 3333 3343332221110000000            


Q ss_pred             CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhH
Q psy12303        338 DKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKR  417 (480)
Q Consensus       338 ~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~  417 (480)
                           ........+++...    ........+...++..++.+.+.+ +.+.....+...+.+++........       
T Consensus       230 -----~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-------  292 (343)
T d1m6sa_         230 -----MRQAGVLAAAGIIA----LTKMVDRLKEDHENARFLALKLKE-IGYSVNPEDVKTNMVILRTDNLKVN-------  292 (343)
T ss_dssp             -----CSSTHHHHHHHHHH----HHHSSTTHHHHHHHHHHHHHHHHH-HTCBCCGGGCCSSEEEEECTTSSSC-------
T ss_pred             -----cchhHHHHHhhhhh----hhhhHHHHHHHHHHHHHhhhHHHH-hccCccCCCCCceEEEEEeCCCccc-------
Confidence                 00001111111111    112223334455566666666666 5555544444445555533221211       


Q ss_pred             HHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        418 LNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       418 ~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                             ..++.+.|.++|+.+...    + .+.+|++ ++..+|+||||+++++|+++++++
T Consensus       293 -------a~~l~~~L~~~Gi~v~~~----~-~~~iRi~-~~~~~t~edid~~v~~l~~v~~~~  342 (343)
T d1m6sa_         293 -------AHGFIEALRNSGVLANAV----S-DTEIRLV-THKDVSRNDIEEALNIFEKLFRKF  342 (343)
T ss_dssp             -------HHHHHHHHHHHTEECEEE----E-TTEEEEE-CCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHCCCEEecC----C-CCEEEEE-CCCCCCHHHHHHHHHHHHHHHHHh
Confidence                   346788888999544332    2 4689999 889999999999999999998864

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=8.2e-20  Score=179.12  Aligned_cols=342  Identities=12%  Similarity=0.118  Sum_probs=214.9

Q ss_pred             HhHHHHHHHHcCcC--CcchhcChhhHHHHHHHHHHHHHHhCCCC---CCeEECCChhHHHHHHHHHHHHhcCchhHhcC
Q psy12303         87 SMAGEWLIATANTN--MFTYEIAPVFILMETVVLEKMRQIIGWQG---GDSILAPGGSISNLYAFLAARHKMFPTYKEKG  161 (480)
Q Consensus        87 ~~~~~~l~~~~~~~--~~~~~~~~~~~~~e~~~~~~la~~~g~~~---~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g  161 (480)
                      ..+.+.+...+...  ...|....+..++.+.+++++.+.+|.+-   .++++|+|+++|+..++.++.+          
T Consensus        41 ~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~----------  110 (418)
T d1w7la_          41 DFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVD----------  110 (418)
T ss_dssp             HHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCC----------
T ss_pred             HHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhcc----------
Confidence            34446666655432  23476677788999999999999999853   4799999999999999888765          


Q ss_pred             CCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCC------------CCCCCCHHHHHHHHHHHHHCCCccEEEE
Q psy12303        162 LSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD------------KRGRLIPSELERLVLERKAKGDIPFFVN  229 (480)
Q Consensus       162 ~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~------------~~~~~d~~~L~~~i~~~~~~~~~~~~v~  229 (480)
                          ||+ .|++..+.++.+...+...|.   +++.++.+            .++.+|.+++.....+.      +++++
T Consensus       111 ----~g~-~vlv~~p~~~~y~~~~~~~g~---~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~------~~~i~  176 (418)
T d1w7la_         111 ----EGD-EVIIIEPFFDCYEPMTMMAGG---RPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSR------TKALV  176 (418)
T ss_dssp             ----TTC-EEEEEESCCTTHHHHHHHTTC---EEEEEECEECC---CCSEEGGGEECCHHHHHHHCCTT------EEEEE
T ss_pred             ----CCc-eeeccccccchhHHHHHHcCC---EeeccccccccccccccccccCcccchhhhhcccccc------cccee
Confidence                545 788888999999999999998   56666543            23456766666555444      89999


Q ss_pred             eccCCCccccccC---hHHHHHHHHHcCcEEEeeccccccccccccccC-cccCCCCCCccceeCccccCCCc-ccceEE
Q psy12303        230 CTSGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH-PRLTGIERADSVTWNPHKLMGTL-LQCSTI  304 (480)
Q Consensus       230 ~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~  304 (480)
                      +++++||||.+.+   +++|.++|++++++++.|++|....+....... ..+.+...-.+++.|++|.++.| ..+|++
T Consensus       177 ~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~  256 (418)
T d1w7la_         177 LNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWV  256 (418)
T ss_dssp             EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEE
T ss_pred             ccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCCccccc
Confidence            9999999999865   788889999999999999999887653222111 01111112245677899987755 789999


Q ss_pred             EEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHH---h---cHHHHHHHHHHHHHHHHHH
Q psy12303        305 HFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA---K---GDEGFEKQIDRLMELAEYM  378 (480)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~---~---g~~~~~~~~~~~~~l~~~l  378 (480)
                      +..+ ..+.............                 .+. .....+...+..   +   ..+.+....++..+.++.+
T Consensus       257 v~~~-~~~~~l~~~~~~~~~~-----------------~~~-~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l  317 (418)
T d1w7la_         257 LGPD-HIMKHLRTVHQNSVFH-----------------CPT-QSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHM  317 (418)
T ss_dssp             ECCH-HHHHHHHHHHHTTTSC-----------------CCH-HHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHH
T ss_pred             ccch-hhhhhhcccccccccc-----------------ccc-hhhHHHHHHhhhccccccccccccccchhhhhhhhhhh
Confidence            8644 3333221110000000                 000 011111111111   1   1245667778888899999


Q ss_pred             HHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhh-hhhHHHHHHHH-hcccEEEeeeeeC------Cccc
Q psy12303        379 VKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILG-EITPILKGRMM-QAGTMMVGYQPLN------DLPN  450 (480)
Q Consensus       379 ~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~-~~~~~i~~~l~-~~g~~~~~~~~~~------~~~~  450 (480)
                      .+.|.+  .|+++. +|+.+.++|...+.......  +...... ....++.++|. +.|+++++...+.      ...+
T Consensus       318 ~~~L~~--~g~~~~-~P~gg~f~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~  392 (418)
T d1w7la_         318 IRSLQS--VGLKPL-IPQGSYFLITDISDFKRKMP--DLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDH  392 (418)
T ss_dssp             HHHHHT--TTCEEE-ECSBSSEEEEECHHHHHHCC--CCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCS
T ss_pred             hhhhhh--cCCccc-CCCceeEEEEECcccccccc--hhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCC
Confidence            999998  588874 67777777644321100000  0000000 00134445544 4564444332221      1147


Q ss_pred             EEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        451 FFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       451 ~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ++|+|+.   .+++++++.+++|+++..|
T Consensus       393 ~iRis~~---~~~~~l~~a~~rl~~~~~~  418 (418)
T d1w7la_         393 YIRFCFV---KDEATLQAMDEKLRKWKVE  418 (418)
T ss_dssp             EEEEECC---CCHHHHHHHHHHHHHHHCC
T ss_pred             EEEEEEc---CCHHHHHHHHHHHHHHhcC
Confidence            9999943   5889999999999998654

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.84  E-value=2.2e-19  Score=176.68  Aligned_cols=326  Identities=13%  Similarity=0.131  Sum_probs=192.3

Q ss_pred             cCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCc
Q psy12303         99 TNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH  178 (480)
Q Consensus        99 ~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h  178 (480)
                      .....|..+|...++|+.    +++++|.+.  ++++++||+||..++.+..+              ||+ +|+.... .
T Consensus        66 ~GDd~Y~~dpt~~~lE~~----~a~l~G~e~--al~~~SGt~An~~a~~~l~~--------------~Gd-~Vi~~~~-f  123 (456)
T d1c7ga_          66 IGDEAYAGSENFYHLEKT----VKELFGFKH--IVPTHQGRGAENLLSQLAIK--------------PGQ-YVAGNMY-F  123 (456)
T ss_dssp             SCCCCSSSCHHHHHHHHH----HHHHHCCSE--EEEESSHHHHHHHHHHHHCC--------------TTE-EEEESSC-C
T ss_pred             ccchhccCCchHHHHHHH----HHHHhCCCe--EEECCCHHHHHHHHHHHhcC--------------CCC-eEecCcc-h
Confidence            444668888988888877    788999986  89999999999999988754              555 6766543 3


Q ss_pred             hhHHHHHHHcCCCCCCeEEeeC----------CCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccc----ccChH
Q psy12303        179 YSVRSCAAVCGLGTDNCVEVPS----------DKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGA----FDPIE  244 (480)
Q Consensus       179 ~s~~~~~~~~g~~~~~v~~v~~----------~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~----~~~l~  244 (480)
                      .+........|.   ..+.+..          ..++.+|+++|+++|++...  ..+.+++++.++|..|.    .++++
T Consensus       124 ~~~~~~i~~~g~---~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~--~~~~~i~~e~~~n~~gG~~~~~~~l~  198 (456)
T d1c7ga_         124 TTTRFHQEKNGA---TFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGA--ENIAYICLAVTVNLAGGQPVSMANMR  198 (456)
T ss_dssp             HHHHHHHHHTTE---EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHH
T ss_pred             HHHHHHHHHcCc---eeeeccccccccccccCCccccCCHHHHHHHhhhcCC--ccceeEEeeecccccccceecHHHHH
Confidence            334444455554   2222222          13578999999999987632  23678888888888763    35689


Q ss_pred             HHHHHHHHcCcEEEeeccccccccccc-----cccCccc-----CCCCCCccceeCccccCCCcccceEEEEeCchhhHh
Q psy12303        245 EIADICQKYNMWLHVDAAWGGGLLLSK-----KYRHPRL-----TGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLIS  314 (480)
Q Consensus       245 ~I~~i~~~~~~~l~vD~a~~~~~~~~~-----~~~~~~~-----~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~  314 (480)
                      +|.++|++||+.+|+|+|+..+.....     .+....+     .....+|++++++||.+++|.| |+++.++..+...
T Consensus       199 ~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~G-G~i~~~~~~l~~~  277 (456)
T d1c7ga_         199 AVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG-GFLCMNDEEMFSA  277 (456)
T ss_dssp             HHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC-EEEEESCHHHHHH
T ss_pred             HHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccce-eEEEcCCHHHHHH
Confidence            999999999999999999876432111     0000000     0012589999999999998554 7777777765544


Q ss_pred             hhcCCcccccccccccCcccCCCCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        315 CNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       315 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                      .......+.  ....      +      .+... .+.++...+....  . .+..++..+++++|.+.|.+  -|+.++.
T Consensus       278 ~r~~~~~~~--g~~~------~------g~~~~~~~~a~a~~l~e~~--~-~~~l~~r~~~~~~L~e~L~~--~g~~vv~  338 (456)
T d1c7ga_         278 AKELVVVYE--GMPS------Y------GGLAGRDMEAMAIGLREAM--Q-YEYIEHRVKQVRYLGDKLRE--AGVPIVE  338 (456)
T ss_dssp             HHHHHHHHT--CCTT------T------TTCCHHHHHHHHHHHHHHT--C-HHHHHHHHHHHHHHHHHHHH--TTCCBCS
T ss_pred             HHHhccccC--CCcc------c------chhhHHHHHHHHHHHHHhc--C-HHHHHHHHHHHHHHHHHHHh--ccCCccc
Confidence            322111100  0000      0      01000 1122222232211  1 23455667788899999998  5777764


Q ss_pred             CCceeEEEEEeecCccCCCchhhHHHHhhhhhHHH-HHHHHhcccEEEeeee-------eCC-----cccEEEEecccCC
Q psy12303        394 EPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPIL-KGRMMQAGTMMVGYQP-------LND-----LPNFFRNIISSAA  460 (480)
Q Consensus       394 ~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i-~~~l~~~g~~~~~~~~-------~~~-----~~~~~R~~~~~~~  460 (480)
                       |.....++.+............    +.  ...+ ...+.+.|+-......       ..+     ....+|++++...
T Consensus       339 -p~g~~~v~vda~~~~~~i~~~~----~~--~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~  411 (456)
T d1c7ga_         339 -PTGGHAVFLDARRFCPHLTQDQ----FP--AQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRV  411 (456)
T ss_dssp             -SCCSSEEEEEHHHHCTTSCGGG----CH--HHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTS
T ss_pred             -CCCCcceeEechhhccCCCccc----cc--HHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCccc
Confidence             4344444433211111111000    00  1122 2333455543222110       001     1346999976566


Q ss_pred             CCHHHHHHHHHHHHHhhc
Q psy12303        461 VTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       461 ~t~~di~~~~~~l~~~~~  478 (480)
                      .|++|||+++++|+++.+
T Consensus       412 ~T~e~iD~Vae~i~~v~~  429 (456)
T d1c7ga_         412 YTYAHMDVVADGIIKLYQ  429 (456)
T ss_dssp             CCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            799999999999998865

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.83  E-value=2.2e-19  Score=173.62  Aligned_cols=331  Identities=14%  Similarity=0.067  Sum_probs=214.7

Q ss_pred             HHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceE
Q psy12303         91 EWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLV  170 (480)
Q Consensus        91 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~  170 (480)
                      +.+...++.+......+|....+|++    +++++|.+.  ++++++||.|+..|++++--+             +|+ +
T Consensus        17 ~~~~~~l~~g~~~~~~g~~v~~fE~~----~a~~~g~~~--~v~~~SGt~Al~lal~~l~~~-------------~gd-e   76 (384)
T d1b9ha_          17 NGLVRALEQGQWWRMGGDEVNSFERE----FAAHHGAAH--ALAVTNGTHALELALQVMGVG-------------PGT-E   76 (384)
T ss_dssp             HHHHHHHHTSCCBTTTCSHHHHHHHH----HHHHTTCSE--EEEESCHHHHHHHHHHHTTCC-------------TTC-E
T ss_pred             HHHHHHHHcCCeeecCCHHHHHHHHH----HHHHHCcCe--EEEeCCHHHHHHHHHHHcCCC-------------CCC-E
Confidence            34444555443333456777777766    888999986  899999999999999765221             556 8


Q ss_pred             EEecCCCchhHHHHHHHcCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHH
Q psy12303        171 MFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADI  249 (480)
Q Consensus       171 vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i  249 (480)
                      |+++..++++...++...|.   +++++++++ ++.+|++.+++.+.+.      +++|++   ++..|...++++|.++
T Consensus        77 Vi~p~~t~~a~~~ai~~~g~---~p~~~d~~~~~~~~d~~~~~~~i~~~------tk~i~~---~~~~g~~~d~~~i~~~  144 (384)
T d1b9ha_          77 VIVPAFTFISSSQAAQRLGA---VTVPVDVDAATYNLDPEAVAAAVTPR------TKVIMP---VHMAGLMADMDALAKI  144 (384)
T ss_dssp             EEEESSSCTHHHHHHHHTTC---EEEEECBCTTTCCBCHHHHHHHCCTT------EEEECC---BCGGGCCCCHHHHHHH
T ss_pred             EEEecccccccccccccccc---ccccccccccccccchhhhccccccc------cccccc---ccccccccccccchhh
Confidence            99999999999999999998   778888876 5889999999988776      888765   4668899999999999


Q ss_pred             HHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccc
Q psy12303        250 CQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKL  329 (480)
Q Consensus       250 ~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  329 (480)
                      |++++++++.|+|++.+.......    ......+.++++++.|.+.+ ...|++++++++.................  
T Consensus       145 ~~~~~i~lieD~a~a~ga~~~g~~----~g~~g~~~~~Sf~~~K~i~~-g~GG~i~t~~~~~~~~~~~~~~~g~~~~~--  217 (384)
T d1b9ha_         145 SADTGVPLLQDAAHAHGARWQGKR----VGELDSIATFSFQNGKLMTA-GEGGAVVFPDGETEKYETAFLRHSCGRPR--  217 (384)
T ss_dssp             HHHHTCCBCEECTTCTTCEETTEE----GGGSSSCEEEECCTTSSSCS-SSCEEEEECTTCHHHHHHHHHHTBTTCCT--
T ss_pred             hhhhhhhhhhhhceecccccCCEe----cCcccccceecccccccccc-cccchhhhhhHHHHHHHHHHHhcCCCCcc--
Confidence            999999999999999887543221    11122455677778899876 44577777877655433211100000000  


Q ss_pred             cCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCc----ee--EEEEE
Q psy12303        330 YDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE----MV--NVSFW  403 (480)
Q Consensus       330 ~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~----~~--~v~f~  403 (480)
                      ....+...  .+...-+...+.+...+..  .+.+++.+++.+++++++.+.|.+ ++++.....+.    ..  .+.|.
T Consensus       218 ~~~~~~~~--~~G~n~rms~l~Aaig~~q--L~~ld~~~~~R~~~~~~y~~~L~~-~~~i~~~~~~~~~~~~~~~~~~~~  292 (384)
T d1b9ha_         218 DDRRYFHK--IAGSNMRLNEFSASVLRAQ--LARLDEQIAVRDERWTLLSRLLGA-IDGVVPQGGDVRADRNSHYMAMFR  292 (384)
T ss_dssp             TCSSCCCC--SCCCBCBCBHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHT-STTCEECCCCTTCCBCCCSEEEEE
T ss_pred             cccccccc--ccccccccccchhhhhhhh--hhhcccchhhhhhhhhhhhhhhhc-ccccccccccccccccccccccce
Confidence            00011110  1111222344444444444  456788889999999999999999 88886643221    11  12222


Q ss_pred             eecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEE-eeeeeC--------C-------------------cccEEEEe
Q psy12303        404 YLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMV-GYQPLN--------D-------------------LPNFFRNI  455 (480)
Q Consensus       404 ~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~-~~~~~~--------~-------------------~~~~~R~~  455 (480)
                       .+...    . +.       -.++.+.|.+.|+-.. .+.+..        +                   ....+.+.
T Consensus       293 -~~~~~----~-~~-------Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP  359 (384)
T d1b9ha_         293 -IPGLT----E-ER-------RNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLH  359 (384)
T ss_dssp             -CTTCC----H-HH-------HHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEE
T ss_pred             -ecccc----c-cc-------HHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEcc
Confidence             11110    0 00       1356788888885322 111100        0                   02467887


Q ss_pred             cccCCCC-HHHHHHHHHHHHHhhcc
Q psy12303        456 ISSAAVT-EGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       456 ~~~~~~t-~~di~~~~~~l~~~~~~  479 (480)
                       +++..| ++||+++++.|+++++.
T Consensus       360 -~~~~Lt~e~ei~~I~~~i~~~l~~  383 (384)
T d1b9ha_         360 -HRVLLAGEPELHATAEIIADAVAR  383 (384)
T ss_dssp             -GGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCCCCHHHHHHHHHHHHHHHhh
Confidence             777777 68999999999997753

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=2.2e-19  Score=168.85  Aligned_cols=310  Identities=16%  Similarity=0.146  Sum_probs=211.0

Q ss_pred             hcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCC---chhH
Q psy12303        105 EIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQC---HYSV  181 (480)
Q Consensus       105 ~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~---h~s~  181 (480)
                      .......++|.-..+...++||+...+ +-..||+.||+.++.+..+              ||+ .|+..+..   |.+.
T Consensus        65 ~G~~~iD~iE~la~~ra~~lF~a~~an-Vqp~SGs~AN~av~~All~--------------pGD-~Il~l~l~~GGHlsh  128 (416)
T d1dfoa_          65 GGCEYVDIVEQLAIDRAKELFGADYAN-VQPHSGSQANFAVYTALLE--------------PGD-TVLGMNLAHGGHLTH  128 (416)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHTCSEEE-CCCSSHHHHHHHHHHHHCC--------------TTC-EEEEECTTTTCCGGG
T ss_pred             CCChhHHHHHHHHHHHHHHHhCCCcce-eecccCccHHHHHHHHhcC--------------CCC-eeeeccccccccccc
Confidence            334566889998999999999997644 3346788999999988865              667 56655554   5554


Q ss_pred             HHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeec
Q psy12303        182 RSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDA  261 (480)
Q Consensus       182 ~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~  261 (480)
                      ...+...|... +.+..++++++.+|.+++++..++.+     |++|++  |.+......|++++.+||++.|+++++|.
T Consensus       129 g~~~~~~g~~~-~~~~y~~d~~~~IDyd~l~~~a~~~k-----PklIi~--G~S~y~r~~d~~~~reiad~vga~l~~D~  200 (416)
T d1dfoa_         129 GSPVNFSGKLY-NIVPYGIDATGHIDYADLEKQAKEHK-----PKMIIG--GFSAYSGVVDWAKMREIADSIGAYLFVDM  200 (416)
T ss_dssp             TCTTSHHHHHS-EEEEECBCSSSSBCHHHHHHHHHHHC-----CSEEEE--ECSSCCSCCCHHHHHHHHHHTTCEEEEEC
T ss_pred             cccccccCceE-EEEecccCCccCccHHHHHHHHHHhc-----cceEEe--cccccccccCHHHHHHHHHhcCceEEcch
Confidence            44333333322 45666778888999999999998763     889887  45667788899999999999999999999


Q ss_pred             cccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCc--hhhHhhhcCCcccccccccccCcccCCCCc
Q psy12303        262 AWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQD--GLLISCNQMSAEYLFMQDKLYDVRYDTGDK  339 (480)
Q Consensus       262 a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  339 (480)
                      +|-.|.+....+..|    ++.+|+++.+.||.+.+|. .|++++++.  +.........-+.+                
T Consensus       201 aH~~GLIa~g~~~sP----~~~aDvvt~tThKtlrGPr-ggiI~~~~~~~~~~~~i~~avfPg~----------------  259 (416)
T d1dfoa_         201 AHVAGLVAAGVYPNP----VPHAHVVTTTTHKTLAGPR-GGLILAKGGSEELYKKLNSAVFPGG----------------  259 (416)
T ss_dssp             TTTHHHHHHTSSCCC----TTTSSEEEEESSSTTCCCS-CEEEEESSCCHHHHHHHHHHHTTTT----------------
T ss_pred             hhhhcceeccccCCc----ccccceeeeehhhcccCCC-ceEEEeccchHhHHHHHHhhhCccc----------------
Confidence            999988866665442    2368999999999999875 577777643  33222221111111                


Q ss_pred             cccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-CceeEEEEEeecCccCCCchhhH
Q psy12303        340 VIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-PEMVNVSFWYLPTRVRNMPHEKR  417 (480)
Q Consensus       340 ~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~  417 (480)
                        +++... ...+...+++..-...+.++.++..++++.|.+.|.+  .|++++.. .+..++.+...+..+.       
T Consensus       260 --qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~--~G~~iv~ggTdnHlvlvdl~~~~~~-------  328 (416)
T d1dfoa_         260 --QGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLE--RGYKVVSGGTDNHLFLVDLVDKNLT-------  328 (416)
T ss_dssp             --CSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSCSSSEEEEECGGGTCC-------
T ss_pred             --ccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHh--CCcccccCCCCCceeEEEecccCCC-------
Confidence              112112 2233444555544566789999999999999999999  79999853 4455555544332221       


Q ss_pred             HHHhhhhhHHHHHHHHhcccEEEeeeeeCC------cccEEEEec---ccCCCCHHHHHHHHHHHHHhhc
Q psy12303        418 LNILGEITPILKGRMMQAGTMMVGYQPLND------LPNFFRNII---SSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       418 ~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~------~~~~~R~~~---~~~~~t~~di~~~~~~l~~~~~  478 (480)
                             .++..+.|-+-|+. +.....++      .+..+|+..   ......++|++++.+.|.++++
T Consensus       329 -------G~~a~~~Le~~gI~-~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~  390 (416)
T d1dfoa_         329 -------GKEADAALGRANIT-VNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLD  390 (416)
T ss_dssp             -------HHHHHHHHHHTTEE-CEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHcCeE-EeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence                   23455566666743 32222111      146899984   3456688999999999887764

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=2e-18  Score=163.79  Aligned_cols=298  Identities=13%  Similarity=0.035  Sum_probs=190.4

Q ss_pred             HHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCcc
Q psy12303         86 VSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAI  165 (480)
Q Consensus        86 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~  165 (480)
                      +.++ +.+...++.....|...++..++.+++.+++... +.+++++++|+|+++++..++.                  
T Consensus        35 ~~i~-~~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~~-~v~~d~I~it~G~~~~l~~l~~------------------   94 (334)
T d2f8ja1          35 EDLV-DEVFRRLNSDALRIYYDSPDEELIEKILSYLDTD-FLSKNNVSVGNGADEIIYVMML------------------   94 (334)
T ss_dssp             HHHH-HHHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTCS-SCCGGGEEEEEHHHHHHHHHHH------------------
T ss_pred             HHHH-HHHHHHhhcchhcCCCCCCcHHHHHHHHHHhccc-CCCcceEEecCcchhHHHHHhh------------------
Confidence            4444 4444445554444434445555555544444321 3566789999999997765543                  


Q ss_pred             CCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHH
Q psy12303        166 KGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEE  245 (480)
Q Consensus       166 ~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~  245 (480)
                      +++ .|++..++|+.+...+..+|.   +++.+|.++++..+..           ...+++++++++|+||+|.+.+.++
T Consensus        95 ~~d-~v~i~~P~y~~~~~~~~~~g~---~~v~v~~~~~~~~~~~-----------~~~~~~~l~l~nP~NPtG~~~s~~~  159 (334)
T d2f8ja1          95 MFD-RSVFFPPTYSCYRIFAKAVGA---KFLEVPLTKDLRIPEV-----------NVGEGDVVFIPNPNNPTGHVFEREE  159 (334)
T ss_dssp             HSS-EEEECSSCCHHHHHHHHHHTC---CEEECCCCTTSCCCCC-----------CCCTTEEEEEESSCTTTCCCCCHHH
T ss_pred             hcc-ccccccccccccccchhccCC---cccccccccccccccc-----------ccccceEEEecccccccceeecHHH
Confidence            224 677888899999999999998   8999999887655411           1123789999999999999999888


Q ss_pred             HHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCccccc
Q psy12303        246 IADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLF  324 (480)
Q Consensus       246 I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~  324 (480)
                      |.+++ ++++++++|++|...........   ... ..--+++.|++|.++.| ..+|+++. ++............+. 
T Consensus       160 l~~~~-~~~~~ii~Dd~~~~~~~~~~~~~---~~~-~~~~i~~~S~SK~~~~~G~R~G~~~~-~~~~i~~l~~~~~~~~-  232 (334)
T d2f8ja1         160 IERIL-KTGAFVALDEAYYEFHGESYVDF---LKK-YENLAVIRTFSKAFSLAAQRVGYVVA-SEKFIDAYNRVRLPFN-  232 (334)
T ss_dssp             HHHHH-TTTCEEEEECTTGGGTCCCCGGG---GGT-CSSEEEEEESTTTSSCTTTCEEEEEE-CHHHHHHHHHHSCTTC-
T ss_pred             hhccc-cceeEEeecccchhhcccccccc---ccc-CceEEEEecCccccchhhhhhhhccc-chHHHHHHHHhhcccc-
Confidence            87764 57899999998865433221111   111 12336677999987754 68899886 4544444322111100 


Q ss_pred             ccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEe
Q psy12303        325 MQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWY  404 (480)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~  404 (480)
                                        .+. .....+...+.  ..+.+++..++..+.++++.+.|++  .|+++. +++++.+.++ 
T Consensus       233 ------------------~s~-~~~~~a~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~--~g~~~~-~~~g~f~~~~-  287 (334)
T d2f8ja1         233 ------------------VSY-VSQMFAKVALD--HREIFEERTKFIVEERERMKSALRE--MGYRIT-DSRGNFVFVF-  287 (334)
T ss_dssp             ------------------SCH-HHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHHHHHH--HTCEEC-CCCSSEEEEE-
T ss_pred             ------------------cch-hhhhhcccccc--cccchhhHHHHHHHHHHHHHHHHHH--CCCeEC-CCCceEEEEE-
Confidence                              000 11112222222  3566778888888999999999999  489875 5665533332 


Q ss_pred             ecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        405 LPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       405 ~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                      .+..               ...++.+.|.++|+++...      .+++|+++.    +.+|+++++++|++
T Consensus       288 ~~~~---------------~~~~~~~~L~~~GI~vr~~------~~~vRis~g----~~ee~~~l~~~l~~  333 (334)
T d2f8ja1         288 MEKE---------------EKERLLEHLRTKNVAVRSF------REGVRITIG----KREENDMILRELEV  333 (334)
T ss_dssp             CCHH---------------HHHHHHHHHHHTTEECEEE------TTEEEEECC----CHHHHHHHHHHHHH
T ss_pred             CCCC---------------CHHHHHHHHHHCCCEECCC------CCeEEEEcC----CHHHHHHHHHHHhc
Confidence            2111               0246778888888543222      479999943    67889999999886

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.81  E-value=2.1e-19  Score=172.64  Aligned_cols=167  Identities=16%  Similarity=0.099  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEec-CCCchhHHHHHHHcCC
Q psy12303        113 METVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTS-DQCHYSVRSCAAVCGL  190 (480)
Q Consensus       113 ~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~-~~~h~s~~~~~~~~g~  190 (480)
                      .+.++++..++.++.+ ..++++|+||++|++.++.++.               |++.+|+++ .++|+++..+++..|.
T Consensus        51 ~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~---------------~~~~vi~~~~~~~~~~~~~~~~l~g~  115 (366)
T d2aeua1          51 FAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK---------------PKKVIHYLPELPGHPSIERSCKIVNA  115 (366)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHC---------------CSEEEEECSSSSCCTHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhC---------------CCCEEEEecCCCcchhHHHHHHhcCC
Confidence            4456666777777764 4578999999999999887653               335456655 4789999999999887


Q ss_pred             CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCc-cccccChHHHHHHHHHcCcEEEeeccccccccc
Q psy12303        191 GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTV-LGAFDPIEEIADICQKYNMWLHVDAAWGGGLLL  269 (480)
Q Consensus       191 ~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~-~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~  269 (480)
                         +  +++.+     |+++|+++|+++      |++|++++++|+ ++.+.++++|+++|++||+|+++|++|+.+.+.
T Consensus       116 ---~--~v~~~-----d~e~l~~~i~~~------tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~  179 (366)
T d2aeua1         116 ---K--YFESD-----KVGEILNKIDKD------TLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRL  179 (366)
T ss_dssp             ---E--EEEES-----CHHHHHTTCCTT------EEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHH
T ss_pred             ---e--EECCC-----CHHHHHHhcCCC------ceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccc
Confidence               3  34444     899999999876      999999999776 456789999999999999999999999876553


Q ss_pred             cccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhh
Q psy12303        270 SKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISC  315 (480)
Q Consensus       270 ~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~  315 (480)
                      ......+...   ++|++++|.||++++ ++.|+++.+ ++++...
T Consensus       180 ~~~~~~~~~~---~~di~~~S~sK~~~g-~~~G~i~~~-~~~i~~~  220 (366)
T d2aeua1         180 LFNQPPALKL---GADLVVTSTDKLMEG-PRGGLLAGK-KELVDKI  220 (366)
T ss_dssp             HTTCCCHHHH---TCSEEEEETTSSSSS-CSCEEEEEE-HHHHHHH
T ss_pred             cccCCCHhhc---CceEEEecccccccc-cceeEEEec-HHHHHHH
Confidence            2211110111   689999999999875 567877754 4554443

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.81  E-value=8.4e-19  Score=164.05  Aligned_cols=309  Identities=13%  Similarity=0.146  Sum_probs=210.4

Q ss_pred             hcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecC---CCchhH
Q psy12303        105 EIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSD---QCHYSV  181 (480)
Q Consensus       105 ~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~---~~h~s~  181 (480)
                      .......++|....+.+.++||+...+ +-.-+||.||+.++.+..+              ||| .|+..+   ..|.++
T Consensus        62 ~G~~~id~iE~la~~ra~~lF~a~~an-Vqp~SGs~An~av~~all~--------------pGD-~im~l~l~~GGHlsh  125 (405)
T d1kl1a_          62 GGCEYVDIVEELARERAKQLFGAEHAN-VQPHSGAQANMAVYFTVLE--------------HGD-TVLGMNLSHGGHLTH  125 (405)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHCCSEEE-CCCSSHHHHHHHHHHHHCC--------------TTC-EEEEECGGGTCCGGG
T ss_pred             CCchhHHHHHHHHHHHHHHHhCCCcce-eeccCchHHHHHHHHHhcC--------------CCC-EEEEeeccccccccc
Confidence            344567889999999999999997644 3445688999988888765              667 555544   346665


Q ss_pred             HHHHHHcCCCCCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEee
Q psy12303        182 RSCAAVCGLGTDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVD  260 (480)
Q Consensus       182 ~~~~~~~g~~~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD  260 (480)
                      .......|... +++..++|+ ++.+|.+++++.+++.+     |++|++  |.+..-...|++++.+||++.|+++++|
T Consensus       126 g~~~~~~g~~~-~~~~y~~d~~~~~ID~d~l~~~a~~~k-----PklIi~--G~S~y~r~~d~~~~reIad~vga~l~~D  197 (405)
T d1kl1a_         126 GSPVNFSGVQY-NFVAYGVDPETHVIDYDDVREKARLHR-----PKLIVA--AASAYPRIIDFAKFREIADEVGAYLMVD  197 (405)
T ss_dssp             TCTTSHHHHHS-EEEEECBCTTTCSBCHHHHHHHHHHHC-----CSEEEE--CCSSCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred             CccccccceEE-EEEEeccchhcccccHHHHHHHHHhhC-----cceEEe--cccccccccChHHHHHHHhhhCCEEecc
Confidence            44444433322 566678875 57899999999998763     888887  5555666778999999999999999999


Q ss_pred             ccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcc
Q psy12303        261 AAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKV  340 (480)
Q Consensus       261 ~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  340 (480)
                      .+|-.|.+....+..|    ++.+|+++++.||.+.+|. .|++++++ +.........-+.+                 
T Consensus       198 ~aH~~GLIa~g~~~~P----~~~aDvvt~tThKtlrGPr-gg~I~~~~-~~~~~i~~avfPg~-----------------  254 (405)
T d1kl1a_         198 MAHIAGLVAAGLHPNP----VPYAHFVTTTTHKTLRGPR-GGMILCQE-QFAKQIDKAIFPGI-----------------  254 (405)
T ss_dssp             CTTTHHHHHTTSSCCS----TTTCSEEEEESSSTTCCCS-CEEEEECH-HHHHHHHHHHTTTT-----------------
T ss_pred             hhhHhhhhhhhhcCCh----hhhhhheeccccccccCCC-CceEEecc-hhHHHHHhhhCccc-----------------
Confidence            9999998877766553    2478999999999999876 46666654 44333322211211                 


Q ss_pred             ccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-CceeEEEEEeecCccCCCchhhHH
Q psy12303        341 IQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-PEMVNVSFWYLPTRVRNMPHEKRL  418 (480)
Q Consensus       341 ~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~~  418 (480)
                       +++-.. ...+...+++......+.++.++..++++.|.+.|.+  .|+.++.. .+..++.....+..+.        
T Consensus       255 -qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~--~G~~vv~ggTd~H~vlvdl~~~~~~--------  323 (405)
T d1kl1a_         255 -QGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQN--EGFTLVSGGTDNHLLLVDLRPQQLT--------  323 (405)
T ss_dssp             -CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSCSSSEEEEECGGGTCC--------
T ss_pred             -ccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc--CCceeecCCCccceeeccccccCCc--------
Confidence             122112 2223333444433456788999999999999999999  79999854 4455565544332221        


Q ss_pred             HHhhhhhHHHHHHHHhcccEEEeeeeeCC------cccEEEEec---ccCCCCHHHHHHHHHHHHHhhc
Q psy12303        419 NILGEITPILKGRMMQAGTMMVGYQPLND------LPNFFRNII---SSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       419 ~~l~~~~~~i~~~l~~~g~~~~~~~~~~~------~~~~~R~~~---~~~~~t~~di~~~~~~l~~~~~  478 (480)
                            .....+.|-+.|+ .+.....++      ....+|+..   ......++|+.++.+.|.++++
T Consensus       324 ------g~~ae~~Le~agI-~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~  385 (405)
T d1kl1a_         324 ------GKTAEKVLDEVGI-TVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK  385 (405)
T ss_dssp             ------HHHHHHHHHHHTE-ECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred             ------HHHHHHHHHHcCe-EEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence                  2233445656664 333222221      146899984   3456688999999999988775

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=8e-19  Score=174.52  Aligned_cols=340  Identities=13%  Similarity=0.072  Sum_probs=194.0

Q ss_pred             cCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCc
Q psy12303         99 TNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH  178 (480)
Q Consensus        99 ~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h  178 (480)
                      .....|..+|...++|+.    +++++|.+.  ++++++||+||..++.+++.+.    ....... . ...+..+...|
T Consensus        65 ~gd~~Y~~~~~~~~le~~----~a~l~G~~~--~~~~~sGt~A~~~a~~~~~~~g----~~~~~~~-~-~~~i~~~~~~~  132 (467)
T d2v1pa1          65 RGDEAFSGSRSYYALAES----VKNIFGYQY--TIPTHQGRGAEQIYIPVLIKKR----EQEKGLD-R-SKMVAFSNYFF  132 (467)
T ss_dssp             SCCCCSSSCHHHHHHHHH----HHHHTCCSE--EEEECSSTTTHHHHHHHHHHHH----HHHHCCC-T-TTCEEEESSCC
T ss_pred             ccchhhcCCchHHHHHHH----HHHHHCCCE--EEECCCCHHHHHHHHHHHhhcc----ceEecCC-C-CcEEEEecccc
Confidence            334567777877777765    889999976  8999999999999999998641    0001100 1 22466666778


Q ss_pred             hhHHHHHHHcCCCCCCeEEeeCCC----------CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccc----cChH
Q psy12303        179 YSVRSCAAVCGLGTDNCVEVPSDK----------RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAF----DPIE  244 (480)
Q Consensus       179 ~s~~~~~~~~g~~~~~v~~v~~~~----------~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~----~~l~  244 (480)
                      +....++...|.   .++.++.+.          .+.+|+++|++.+++...  ..+++|+++..++..|..    ++++
T Consensus       133 ~~~~~~~~~~G~---~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~--~~~~~i~~e~~~~~~gg~~~~~~~l~  207 (467)
T d2v1pa1         133 DTTQGHSQINGC---TVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGP--NNVPYIVATITSNSAGGQPVSLANLK  207 (467)
T ss_dssp             HHHHHHHHHTTC---EEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCG--GGCCCEEEESSBCGGGCBCCCHHHHH
T ss_pred             cccHHHHHHcCC---eeeecccccccccccccccccCCCHHHHHHHHhhcCc--cccceeeecceeeccccccCCHHHHH
Confidence            888888888887   666666542          467999999999987532  225677777776666533    4689


Q ss_pred             HHHHHHHHcCcEEEeeccccccccccccccCcccC----------CCCCCccceeCccccCCCcccceEEEEeCchhhHh
Q psy12303        245 EIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLT----------GIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLIS  314 (480)
Q Consensus       245 ~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~----------~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~  314 (480)
                      +|.++|++||++||+|+|+..+.......+.+...          ....+|+++++.||.+++|. .|++..++......
T Consensus       208 ~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~-gg~i~~~~~~~~~~  286 (467)
T d2v1pa1         208 AMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM-GGLLCMKDDSFFDV  286 (467)
T ss_dssp             HHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSS-CEEEEECSGGGHHH
T ss_pred             HHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCC-ceeEEecchhhhhH
Confidence            99999999999999999987654321111100000          12268999999999999754 46666565543322


Q ss_pred             hhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC
Q psy12303        315 CNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE  394 (480)
Q Consensus       315 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~  394 (480)
                      ............ .            ...........+.+....+......+..++..+++++|.+.|.+  .++.+. +
T Consensus       287 ~~~~~~~~~~~~-~------------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~~~~v~-~  350 (467)
T d2v1pa1         287 YTECRTLCVVQE-G------------FPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEE--IGVVCQ-Q  350 (467)
T ss_dssp             HHHHHHHHHHTT-S------------SCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH--TTCCEE-E
T ss_pred             HHhhcccccccc-c------------CcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHh--cCCccc-C
Confidence            110000000000 0            00000011222222222222222245667778899999999998  354443 2


Q ss_pred             CceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeee-------e-----eCCcccEEEEecccCCCC
Q psy12303        395 PEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQ-------P-----LNDLPNFFRNIISSAAVT  462 (480)
Q Consensus       395 ~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~-------~-----~~~~~~~~R~~~~~~~~t  462 (480)
                      +....+...... ........++..     .....+.+.+.|+..+..+       .     .......+|++++....|
T Consensus       351 ~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T  424 (467)
T d2v1pa1         351 AGGHAAFVDAGK-LLPHIPADQFPA-----QALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYT  424 (467)
T ss_dssp             ECSSCEEEEHHH-HSTTSCGGGCHH-----HHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCC
T ss_pred             CCccceeecchh-hcCCcchhhhhh-----HHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCC
Confidence            222222221110 000000001100     0112233445554322111       0     001146899996666779


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy12303        463 EGDIDFLLTEMDRLGH  478 (480)
Q Consensus       463 ~~di~~~~~~l~~~~~  478 (480)
                      ++|||+++++|+++.+
T Consensus       425 ~eeiD~vv~~l~~v~~  440 (467)
T d2v1pa1         425 QTHMDFIIEAFKHVKE  440 (467)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998875

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.80  E-value=1.5e-18  Score=167.26  Aligned_cols=319  Identities=11%  Similarity=0.058  Sum_probs=212.0

Q ss_pred             hhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHH
Q psy12303        104 YEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRS  183 (480)
Q Consensus       104 ~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~  183 (480)
                      +..+|....+|++    +++++|.+.  ++++++||.|+..+++++...       .|    . +.+|+++..++++...
T Consensus        27 ~~~G~~v~~fE~~----~~~~~g~k~--ai~~~Sgt~Al~~al~al~~~-------~~----~-~~eVi~p~~t~~a~~~   88 (371)
T d2fnua1          27 LTQGKRSLLFEEA----LCEFLGVKH--ALVFNSATSALLTLYRNFSEF-------SA----D-RNEIITTPISFVATAN   88 (371)
T ss_dssp             CSSSHHHHHHHHH----HHHHHTCSE--EEEESCHHHHHHHHHHHSSCC-------CT----T-SCEEEECSSSCTHHHH
T ss_pred             ccCCHHHHHHHHH----HHHHHCcCe--EEEEecHHHHHHHHHHHhccc-------CC----C-CCeeecccccccccce
Confidence            3446777777765    888999986  899999999999999876432       11    1 2379999999999999


Q ss_pred             HHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccc
Q psy12303        184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       184 ~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                      ++...|.   +.++++++++..++.+++++++.+.      +++|++++   ..|...++++|.++|+++|++++.|+||
T Consensus        89 ai~~~G~---~pv~vDi~~~~~~~~~~~~~~~~~~------t~avi~vh---~~G~~~~~~~i~~~~~~~~i~lIEDaaq  156 (371)
T d2fnua1          89 MLLESGY---TPVFAGIKNDGNIDELALEKLINER------TKAIVSVD---YAGKSVEVESVQKLCKKHSLSFLSDSSH  156 (371)
T ss_dssp             HHHHTTC---EEEECCBCTTSSBCGGGSGGGCCTT------EEEEEEEC---GGGCCCCHHHHHHHHHHHTCEEEEECTT
T ss_pred             eeeccCc---ccccccccccccccchhhhhhccch------hhcccccc---ccccccccccccccccccchhhccchhh
Confidence            9999998   8899999988888888887777665      88888765   5799999999999999999999999999


Q ss_pred             cccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccC
Q psy12303        264 GGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQC  343 (480)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  343 (480)
                      +.|.......    ......+.++++.+.|.+.+ .+.|++++++.+..+.+...........   ....++.  ..+..
T Consensus       157 a~Ga~~~~~~----~G~~g~~~~~Sf~~~K~l~~-g~GG~i~t~~~~~~~~~~~~~~~g~~~~---~~~~~~~--~~~G~  226 (371)
T d2fnua1         157 ALGSEYQNKK----VGGFALASVFSFHAIKPITT-AEGGAVVTNDSELHEKMKLFRSHGMLKK---DFFEGEV--KSIGH  226 (371)
T ss_dssp             CTTCEETTEE----TTSSSSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHTBTTEEES---SSSCEEE--SSCCC
T ss_pred             ccCceecccc----CCcccccccccccccccccc-ccceEEEeechhhhhhcccccccccccc---ccccccc--ccccc
Confidence            9987643321    11222456677777899887 4568888888766554432211111000   0000000  01112


Q ss_pred             CCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCce-----eEEEEEeecCccCCCchhhHH
Q psy12303        344 GRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEM-----VNVSFWYLPTRVRNMPHEKRL  418 (480)
Q Consensus       344 ~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~-----~~v~f~~~~~~~~~~~~~~~~  418 (480)
                      ..+..-+.+...+..  .+.+++.+++..++++++.+.|.. .+++.+..++..     ..+.+.+.....         
T Consensus       227 n~r~sel~Aaigl~q--L~~l~~~~~~R~~~~~~y~~~l~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------  294 (371)
T d2fnua1         227 NFRLNEIQSALGLSQ--LKKAPFLMQKREEAALTYDRIFKD-NPYFTPLHPLLKDKSSNHLYPILMHQKFF---------  294 (371)
T ss_dssp             BCCCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTT-CSSEEESGGGCSSCCCCSCEEEEECGGGG---------
T ss_pred             cccccchhhhhhhhh--hhhccchhhhhhhhhhhhcccccc-cccccccccccccccccccccccccccch---------
Confidence            233444455455544  456788889999999999999999 888887543211     112222111000         


Q ss_pred             HHhhhhhHHHHHHHHhcccEEEe-eee-----------eCCc--------ccEEEEecccCCCCHHHHHHHHHHHHHhhc
Q psy12303        419 NILGEITPILKGRMMQAGTMMVG-YQP-----------LNDL--------PNFFRNIISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       419 ~~l~~~~~~i~~~l~~~g~~~~~-~~~-----------~~~~--------~~~~R~~~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                        .  .-+++.+.|.+.|+-... +.+           ..+.        ...+.+. +++..|++||+++++.|.+..+
T Consensus       295 --~--~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP-~~~~lt~~di~~I~~~i~~~~~  369 (371)
T d2fnua1         295 --T--CKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLP-CHANLNLESVQNIAHSVLKTFE  369 (371)
T ss_dssp             --G--GHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEEC-CCTTCCHHHHHHHHHHHHHHHH
T ss_pred             --h--HHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECc-CCCCCCHHHHHHHHHHHHHHHH
Confidence              0  013466777777742110 000           0010        2467777 7899999999999999998876


Q ss_pred             c
Q psy12303        479 D  479 (480)
Q Consensus       479 ~  479 (480)
                      .
T Consensus       370 ~  370 (371)
T d2fnua1         370 S  370 (371)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.80  E-value=4.3e-18  Score=169.17  Aligned_cols=332  Identities=13%  Similarity=0.111  Sum_probs=187.2

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhH
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV  181 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~  181 (480)
                      ..|..++...++|+.    +++++|.+.  +++++|||+||..+++++++..    .+.|.   . +..++.+...|.+.
T Consensus        69 ~~y~~~~~~~~le~~----~a~l~g~~~--~~~~~sGt~A~~~a~~~~~~~g----~~~~~---~-~~~~i~~~~h~~t~  134 (465)
T d1ax4a_          69 EAYAGSRNYYDLKDK----AKELFNYDY--IIPAHQGRGAENILFPVLLKYK----QKEGK---A-KNPVFISNFHFDTT  134 (465)
T ss_dssp             CCSSSCHHHHHHHHH----HHHHHCCCE--EEEESSHHHHHHHHHHHHHHHH----HHTTC---C-SSCEEEESSCCHHH
T ss_pred             hhhccChHHHHHHHH----HHHHHCCCE--EEECCCcHHHHHHHHHHHHHHH----HhcCC---C-CCeEEeccchhhhh
Confidence            456667777676655    788899875  8999999999999999998741    12222   2 22445555445555


Q ss_pred             HHHHHHcCCCCCCeEEee---------C-CCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccc----cChHHHH
Q psy12303        182 RSCAAVCGLGTDNCVEVP---------S-DKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAF----DPIEEIA  247 (480)
Q Consensus       182 ~~~~~~~g~~~~~v~~v~---------~-~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~----~~l~~I~  247 (480)
                      .......|.   ..+.++         . ..++.+|+++|+++|++...  ..+.+++++..++..|..    +++++|.
T Consensus       135 ~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~l~~i~  209 (465)
T d1ax4a_         135 AAHVELNGC---KAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGA--DNIVAIVSTVTCNSAGGQPVSMSNLKEVY  209 (465)
T ss_dssp             HHHHHHTTC---EEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHHHHH
T ss_pred             HHHHHHcCC---eeecccccccCCCCCCCCccCccCHHHHHHHHHhhcc--ccccceeeccccccCceecCCHHHHHHHH
Confidence            555555565   333322         1 23578999999999987532  235666666665555432    3588999


Q ss_pred             HHHHHcCcEEEeeccccccccccccccCcccC----------CCCCCccceeCccccCCCcccceEEEEeCchhhHhhh-
Q psy12303        248 DICQKYNMWLHVDAAWGGGLLLSKKYRHPRLT----------GIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCN-  316 (480)
Q Consensus       248 ~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~----------~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~-  316 (480)
                      ++|++||+++|+|+|+..+.......+.+...          ....+|+++++.||.+++|. .|++++++........ 
T Consensus       210 ~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~-~g~l~~~~~~~~~~~~~  288 (465)
T d1ax4a_         210 EIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI-GGLVAIRDNEEIFTLAR  288 (465)
T ss_dssp             HHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSS-CEEEEESSCHHHHHHHH
T ss_pred             HHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCccccc-ceeEeecchHHHHHhhh
Confidence            99999999999999987543321110000000          01147899999999988654 5777777653322111 


Q ss_pred             cCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCC
Q psy12303        317 QMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDE-GFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP  395 (480)
Q Consensus       317 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~-~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~  395 (480)
                      .....+...                 .+....+.....++.....+ ...+..++..+++++|.+.|++  .++.++.++
T Consensus       289 ~~~~~~~~~-----------------~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~--~g~~~v~~~  349 (465)
T d1ax4a_         289 QRCVPMEGF-----------------VTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLRE--AGIPIQYPT  349 (465)
T ss_dssp             HHHHHHTCS-----------------TTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH--TTCCBCSSC
T ss_pred             ccccccccC-----------------CCcchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHh--hcCccccCC
Confidence            000000000                 00001122222222211111 1234556677788999999998  577766443


Q ss_pred             ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeee------------eCCcccEEEEecccCCCCH
Q psy12303        396 EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQP------------LNDLPNFFRNIISSAAVTE  463 (480)
Q Consensus       396 ~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~------------~~~~~~~~R~~~~~~~~t~  463 (480)
                       ....++.....-........+..     .......+.+.|+.......            .....+.+|++.+....|+
T Consensus       350 -~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~  423 (465)
T d1ax4a_         350 -GGHAVFVDCKKLVPQIPGDQFPA-----QAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTN  423 (465)
T ss_dssp             -CSSEEEEESTTTCTTSCGGGCHH-----HHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCH
T ss_pred             -CcceeeeehhhhcCCCccccchh-----HHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCH
Confidence             33333332211111111111100     11233445566643222110            0001357999855566799


Q ss_pred             HHHHHHHHHHHHhhc
Q psy12303        464 GDIDFLLTEMDRLGH  478 (480)
Q Consensus       464 ~di~~~~~~l~~~~~  478 (480)
                      +|||+++++|+++.+
T Consensus       424 eeiD~vv~~l~~v~~  438 (465)
T d1ax4a_         424 DHMDYIADALIGLKE  438 (465)
T ss_dssp             HHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998764

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.79  E-value=5.9e-19  Score=169.61  Aligned_cols=342  Identities=11%  Similarity=0.015  Sum_probs=197.0

Q ss_pred             CccccccCCCC-hHHhHHHHHHHHcCcC---Ccchh---cChhhHHHHHHHHHHHHHHhCCCCC-CeEECCChhHHHHHH
Q psy12303         74 MFMNQLSCGLD-VVSMAGEWLIATANTN---MFTYE---IAPVFILMETVVLEKMRQIIGWQGG-DSILAPGGSISNLYA  145 (480)
Q Consensus        74 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~---~~~~~---~~~~~~~~e~~~~~~la~~~g~~~~-~~~~t~ggt~a~~~a  145 (480)
                      +-+||.|+|.. |..++..+...+.+..   ....+   .++-+.++.+++++.+++++|.+++ .++|++|++++++.+
T Consensus         3 ~~~~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea   82 (361)
T d2c0ra1           3 RAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAM   82 (361)
T ss_dssp             CCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHH
T ss_pred             CCcccCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHH
Confidence            55677777755 4555544433443321   11111   2677888999999999999999653 688888888877766


Q ss_pred             HHHHHHhcCchhHhcCCCccCCceEEEecCCCchh--HHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCC
Q psy12303        146 FLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYS--VRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGD  223 (480)
Q Consensus       146 l~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s--~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~  223 (480)
                      +......             +++.++++. ..+++  +...+...|.   .+..++.+.....+++.+++.++..     
T Consensus        83 ~~~~l~~-------------~~~~~l~~~-~g~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~-----  140 (361)
T d2c0ra1          83 IPMNFLK-------------EGQTANYVM-TGSWASKALKEAKLIGD---THVAASSEASNYMTLPKLQEIQLQD-----  140 (361)
T ss_dssp             HHHHHCC-------------TTCEEEEEE-CSHHHHHHHHHHHHHSC---EEEEEECGGGTTCSCCCGGGCCCCT-----
T ss_pred             HHhcccc-------------CCCceEEEe-echhhhhhhhhhhhcCc---eeeeeccccccccchhhhhhhcccC-----
Confidence            6544322             334333333 22222  4455566676   7777777777778888887766543     


Q ss_pred             ccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceE
Q psy12303        224 IPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCST  303 (480)
Q Consensus       224 ~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~  303 (480)
                       +.    ++.+|.||.+.|+.+|.++|+++|++++||++++.+..+.+..++       ++|+  +++||.++.|.+.++
T Consensus       141 -~~----~~v~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~~id~~~~-------di~~--~s~~k~~~~~~~~~~  206 (361)
T d2c0ra1         141 -NA----AYLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFDLNQF-------GLVY--AGAQKNLGPSGVTVV  206 (361)
T ss_dssp             -TE----EEEEEESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCCCGGGC-------SEEE--EETTTTTCCSSCEEE
T ss_pred             -cc----eEEEEecccceecceEEEeeccCCceEEEEeeccccccccccccc-------eeEE--EecccccccccCcEE
Confidence             32    223467899999999999999999999999999999998887666       5554  557888886555444


Q ss_pred             EEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHH-HhcHHHHHHHHHHHHHHHHHHHHHH
Q psy12303        304 IHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWR-AKGDEGFEKQIDRLMELAEYMVKKI  382 (480)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~-~~g~~~~~~~~~~~~~l~~~l~~~l  382 (480)
                      ++ ......... .....+......     ..... ....+.......+..... .....+.....++....+..+....
T Consensus       207 ~~-~~~~~~~~~-~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (361)
T d2c0ra1         207 IV-REDLVAESP-KHLPTMLRYDTY-----VKNNS-LYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAI  278 (361)
T ss_dssp             EE-EGGGSSSCC-TTSCGGGCHHHH-----HHTTT-CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             EE-EhHHhhhCc-cccccccccccc-----ccccc-ccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhh
Confidence            44 444322111 111111100000     00000 000000001111111111 1122334455566666666666666


Q ss_pred             hcCCCC-eEEecCC---ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEeccc
Q psy12303        383 KSMPDK-FYLILEP---EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISS  458 (480)
Q Consensus       383 ~~~~~g-~~~~~~~---~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~  458 (480)
                      .. ... ......+   ....++|... ....              ..++.+.|.+.|++ +.. +... -+.||++ ..
T Consensus       279 ~~-~~~~~~~~~~~~~rS~~~~~~~~~-~~~~--------------~~~~~~~L~~~GI~-~~~-G~~~-~g~~RIs-~~  338 (361)
T d2c0ra1         279 DQ-SGGFYRGCVDVDSRSDMNITFRLA-SEEL--------------EKEFVKASEQEGFV-GLK-GHRS-VGGLRAS-IY  338 (361)
T ss_dssp             HT-STTSSEESSCGGGBCSSEEEEECS-CHHH--------------HHHHHHHHHHTTEE-SCB-CCTT-TCSEEEE-CC
T ss_pred             hh-cccccccCCChhhccceEEEEECC-Cccc--------------HHHHHHHHHHCCCE-Eec-CCCc-CCeEEEE-ec
Confidence            65 333 3333322   2244666542 2210              24667888888843 222 2222 2349999 77


Q ss_pred             CCCCHHHHHHHHHHHHHhhcc
Q psy12303        459 AAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       459 ~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .++|.|||++|++.|+++.++
T Consensus       339 ~~~~~edv~~Lv~~l~~~~~~  359 (361)
T d2c0ra1         339 NAVPYESCEALVQFMEHFKRS  359 (361)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHh
Confidence            888999999999999998653

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.78  E-value=2.1e-17  Score=157.17  Aligned_cols=308  Identities=16%  Similarity=0.138  Sum_probs=194.3

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCCC---eEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCC---Cchh
Q psy12303        107 APVFILMETVVLEKMRQIIGWQGGD---SILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQ---CHYS  180 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~~~---~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~---~h~s  180 (480)
                      .....++|..+.+.+.++||++...   -+-.-+|+.||+.++.+..+              ||+ .|+.-..   .|.|
T Consensus        68 ~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all~--------------pgD-~Im~l~l~~GGHls  132 (463)
T d2a7va1          68 AEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ--------------PHD-RIMGLDLPDGGHLT  132 (463)
T ss_dssp             ---CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC--------------SCE-ECCC----------
T ss_pred             chhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHHcC--------------CCc-eEEeeccCcCcccc
Confidence            3446789999999999999998742   25566789999988888765              656 5554433   3555


Q ss_pred             HHH-----HHHHcCCCCCCeEEeeCC-CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcC
Q psy12303        181 VRS-----CAAVCGLGTDNCVEVPSD-KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYN  254 (480)
Q Consensus       181 ~~~-----~~~~~g~~~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~  254 (480)
                      ...     .....|... ++...+++ +++.+|.+++++..++.+     |++|++  |.+..-...|++++.+||++.|
T Consensus       133 hg~~~~~~~~~~~g~~~-~~~~Y~~d~~~~~IDyd~~~~~a~~~k-----PklIi~--G~S~y~r~~d~~~~reIad~vg  204 (463)
T d2a7va1         133 HGYMSDVKRISATSIFF-ESMPYKLNPKTGLIDYNQLALTARLFR-----PRLIIA--GTSAYARLIDYARMREVCDEVK  204 (463)
T ss_dssp             ----------------------CCBCTTTCSBCHHHHHHHHHHHC-----CSEEEE--CCSSCCSCCCHHHHHHHHHHTT
T ss_pred             cccccccccccceeeEe-eeeeeeccCCCCcCcHHHHHHHHhhcC-----CceEEe--cccccccccCHHHHHHHhhccc
Confidence            442     222233311 34445556 468999999999998863     889888  5566667789999999999999


Q ss_pred             cEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCch--------------hhHhhhcCCc
Q psy12303        255 MWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDG--------------LLISCNQMSA  320 (480)
Q Consensus       255 ~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~--------------~~~~~~~~~~  320 (480)
                      +++++|.+|-.|.+....+..| +   +.+|+++++.||.+.+|. +|++++++..              +........-
T Consensus       205 a~l~~D~aH~aGLIA~g~~~sP-~---~~aDvvt~tTHKTlrGPr-gGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avF  279 (463)
T d2a7va1         205 AHLLADMAHISGLVAAKVIPSP-F---KHADIVTTTTHKTLRGAR-SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVF  279 (463)
T ss_dssp             CEEEEECGGGHHHHHTTSSCCG-G---GTCSEEEEESSGGGCSCS-CEEEEEECSEEEEETTTEEEEECCCHHHHHHHHT
T ss_pred             ceEEechhhhhHHhhhhhhcCh-h---hhhhhhhchhhhhhcCCC-ceEEEEcccccccccccCccchhHHHHHhhhhcC
Confidence            9999999999998877666553 2   378999999999999876 5777777631              1111110000


Q ss_pred             ccccccccccCcccCCCCccccCCCCCC-chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-Ccee
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHND-IFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-PEMV  398 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~-~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~~~~  398 (480)
                      +                  +++++.... ..+...+++......++++.++..++++.|.+.|.+  .|+.++.. .+..
T Consensus       280 P------------------g~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~--~G~~vv~ggTdnH  339 (463)
T d2a7va1         280 P------------------SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE--RGYSLVSGGTDNH  339 (463)
T ss_dssp             T------------------TTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSCSSS
T ss_pred             c------------------ccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh--CCCeeecCCCCCc
Confidence            1                  112222222 223333444433456789999999999999999999  79999864 3344


Q ss_pred             EEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCC-----cccEEEEec---ccCCCCHHHHHHHH
Q psy12303        399 NVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLND-----LPNFFRNII---SSAAVTEGDIDFLL  470 (480)
Q Consensus       399 ~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~-----~~~~~R~~~---~~~~~t~~di~~~~  470 (480)
                      ++.+...+..+.              .....+.|-+.| +.+.....++     .+..+|+..   ......++|+.++.
T Consensus       340 lvlvdl~~~~~~--------------G~~ae~~Le~~g-I~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA  404 (463)
T d2a7va1         340 LVLVDLRPKGLD--------------GARAERVLELVS-ITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVV  404 (463)
T ss_dssp             EEEEECTTTTCC--------------HHHHHHHHHHTT-EECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHH
T ss_pred             eeeeeccccCCC--------------HHHHHHHHHhcc-CccCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHH
Confidence            555543332222              234455666666 4333322221     145799984   23556789999999


Q ss_pred             HHHHHhh
Q psy12303        471 TEMDRLG  477 (480)
Q Consensus       471 ~~l~~~~  477 (480)
                      +.|.+++
T Consensus       405 ~~I~~~l  411 (463)
T d2a7va1         405 DFIDEGV  411 (463)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887755

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2.7e-19  Score=171.74  Aligned_cols=344  Identities=12%  Similarity=-0.070  Sum_probs=201.3

Q ss_pred             ccccccCCCC-hHHhHHHHHHH-HcCcC---Ccchh---cChhhHHHHHHHHHHHHHHhCCCCC-CeEECCChhHHHHHH
Q psy12303         75 FMNQLSCGLD-VVSMAGEWLIA-TANTN---MFTYE---IAPVFILMETVVLEKMRQIIGWQGG-DSILAPGGSISNLYA  145 (480)
Q Consensus        75 ~~~~~~~~~~-~~~~~~~~l~~-~~~~~---~~~~~---~~~~~~~~e~~~~~~la~~~g~~~~-~~~~t~ggt~a~~~a  145 (480)
                      .+||.|+|.. |+.++ +.+.. +.|.+   ...++   .++-+.++-+++++.+++++|+++. .++|++|++++++.+
T Consensus         2 ~~nF~pGP~~~p~~Vl-~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a   80 (360)
T d1bjna_           2 IFNFSSGPAMLPAEVL-KQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAA   80 (360)
T ss_dssp             CEECCSSSCCCCHHHH-HHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred             eEEeCCCCcCCCHHHH-HHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhh
Confidence            3677777765 45555 44444 33332   22111   3577788888999999999999653 678888888888777


Q ss_pred             HHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCcc
Q psy12303        146 FLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIP  225 (480)
Q Consensus       146 l~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~  225 (480)
                      +......             + +..+++.. .|................++....+.+...+.+.+++.+...      +
T Consensus        81 ~~~~~~~-------------~-~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  139 (360)
T d1bjna_          81 VPLNILG-------------D-KTTADYVD-AGYWAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLS------D  139 (360)
T ss_dssp             HHHHHCT-------------T-CCEEEEEE-SSHHHHHHHHHHTTTSEEEEEECEEEETTEEEECCGGGCCCC------S
T ss_pred             hhhcccc-------------c-ccccceec-ccchhhhhHHHHhhcCccceeeccccCCCcchhhhhhhhccC------C
Confidence            6544321             2 32555554 333344444444332224444444444445555555554443      6


Q ss_pred             EEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEE
Q psy12303        226 FFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIH  305 (480)
Q Consensus       226 ~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~  305 (480)
                      +++++++.+|.||...|+.++.  ++.+++.+++|++.+.+....+..         .+|+..+++||+++.|.+.++++
T Consensus       140 ~~v~v~~~~~~t~~~~~~~~i~--~~~~~~~v~vDa~~~~~~~~vd~~---------~~dv~~~ss~k~~~~~~~~~~~~  208 (360)
T d1bjna_         140 NAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTILSRPIDVS---------RYGVIYAGAQKNIGPAGLTIVIV  208 (360)
T ss_dssp             SCSCEEECSEETTTTEECCCCC--CCCTTCCEEEECTTTTTSSCCCGG---------GCSEEEEETTTTTSSTTCEEEEE
T ss_pred             ceeEEEecccccccCcccccee--cccccceeeeeeeccccceeeeec---------cceeEEEEcccccccCCCceeEe
Confidence            7788888899999998887764  567789999999999888777654         56888888999999988888887


Q ss_pred             EeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12303        306 FKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM  385 (480)
Q Consensus       306 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~  385 (480)
                      +........ . ....+.....     ..+....................+......+.....++..+.+.++...+.. 
T Consensus       209 ~~~~~~~~~-~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  280 (360)
T d1bjna_         209 REDLLGKAN-I-ACPSILDYSI-----LNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDN-  280 (360)
T ss_dssp             EGGGCSCCC-T-TSCGGGCHHH-----HHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             eehhhhhcc-c-cCCcchhhHH-----HHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhc-
Confidence            655422111 0 0001100000     0001100000000001111112222222345566667777777777777777 


Q ss_pred             CCCeEEecCC---ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCC
Q psy12303        386 PDKFYLILEP---EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVT  462 (480)
Q Consensus       386 ~~g~~~~~~~---~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t  462 (480)
                      .........+   ..++++|.+. ....              .+++...|.+.|++...  +... -+.+|++ ...++|
T Consensus       281 ~~~~~~~~~~~~rs~~v~~f~~~-~~~~--------------~~~~~~~l~~~Gi~~~~--G~~~-~g~~Ris-~~~~~t  341 (360)
T d1bjna_         281 SDFYRNDVAKRNRSRMNVPFQLA-DSAL--------------DKLFLEESFAAGLHALK--GHRV-VGGMRAS-IYNAMP  341 (360)
T ss_dssp             CSSEECCBCGGGBCSSEEEEEES-SGGG--------------HHHHHHHHHHTTEECCB--CCTT-TCSEEEE-CCTTSC
T ss_pred             cccccccCCcccccceEEEEEcC-Cccc--------------HHHHHHHHHHCCCEeec--CCCc-cCeEEEE-ecCCCC
Confidence            4444433322   2356777653 2211              24566777788843222  2211 2349999 778999


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy12303        463 EGDIDFLLTEMDRLGH  478 (480)
Q Consensus       463 ~~di~~~~~~l~~~~~  478 (480)
                      +|||+++++.|+++.+
T Consensus       342 ~edV~~li~~l~e~~~  357 (360)
T d1bjna_         342 LEGVKALTDFMVEFER  357 (360)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999765

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.76  E-value=2.8e-16  Score=148.91  Aligned_cols=223  Identities=14%  Similarity=0.128  Sum_probs=166.1

Q ss_pred             hcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH
Q psy12303        105 EIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC  184 (480)
Q Consensus       105 ~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~  184 (480)
                      ...|....+|+.    ++.+-|...  .+++++|..|+..++.+...              ||+ +|+++...|......
T Consensus        60 ~~nPT~~~LE~~----la~LEgg~~--a~~~sSGmaAi~~~l~~ll~--------------~Gd-~vi~~~~~Yg~t~~~  118 (397)
T d1y4ia1          60 LGNPTTDALEKK----LAVLERGEA--GLATASGISAITTTLLTLCQ--------------QGD-HIVSASAIYGCTHAF  118 (397)
T ss_dssp             TSCHHHHHHHHH----HHHHHTCSE--EEEESSHHHHHHHHHHHHCC--------------TTC-EEEEESSSCHHHHHH
T ss_pred             CCCHHHHHHHHH----HHHHhCCcc--ceeehHHHHHHHHHHhhccC--------------CCC-eeeeecccccccchh
Confidence            355766666665    788877754  78899999999888877754              567 777777777776655


Q ss_pred             HH----HcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEee
Q psy12303        185 AA----VCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVD  260 (480)
Q Consensus       185 ~~----~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD  260 (480)
                      +.    ..|+   ++.+++..     |++.++++++++      |++|.+..|+||+..+.||++|+++|+++|++++||
T Consensus       119 ~~~~l~~~Gi---~~~~vd~~-----d~~~~~~~i~~~------Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvD  184 (397)
T d1y4ia1         119 LSHSMPKFGI---NVRFVDAG-----KPEEIRAAMRPE------TKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVD  184 (397)
T ss_dssp             HHTHHHHTTC---EEEEECTT-----SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             hhcccCCCce---EeeccCCC-----CHHHHHHhcCCC------CcEEEecCCcccceeecccHHHHHHhhcCCceEEec
Confidence            53    3465   77887754     789999999876      999999999999999999999999999999999999


Q ss_pred             ccccccccccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCC
Q psy12303        261 AAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGD  338 (480)
Q Consensus       261 ~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  338 (480)
                      .+++.+...-| ..+       ++|++..|.-|++++--.  .|+++ .+.+.+....-..-..+               
T Consensus       185 nT~atP~~~~P-l~~-------GaDivihS~TKyi~Ghsdvl~G~v~-~~~~~~~~~r~~~~~~~---------------  240 (397)
T d1y4ia1         185 NTFMSPYCQQP-LQL-------GADIVVHSVTKYINGHGDVIGGIIV-GKQEFIDQARFVGLKDI---------------  240 (397)
T ss_dssp             CTTTCTTTCCG-GGG-------TCSEEEEETTTTTTCSSCCCCEEEE-ECHHHHHHHHHTHHHHT---------------
T ss_pred             CcccCcccCcc-hhc-------CCCEEEEehhhhcCCCcceeeeccC-CCHHHHHHHHHHHHHhC---------------
Confidence            99988765443 355       899999999999986532  45555 44444332110000000               


Q ss_pred             ccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        339 KVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       339 ~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                          .|-......+|+.++.  .+.+.-+++++.+++..+.+.|++ +|.++-+.
T Consensus       241 ----~G~~l~p~~a~l~~rg--l~TL~lRm~~~~~nA~~lA~~L~~-hp~V~~V~  288 (397)
T d1y4ia1         241 ----TGGCMSPFNAWLTLRG--VKTLGIRMERHCENALKIARFLEG-HPSITRVY  288 (397)
T ss_dssp             ----TCCCCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHT-CTTEEEEE
T ss_pred             ----cCCcCCHHHHHHHHcC--cCcHHHHHHHHHHHHHHHHHHHHh-CCCcCeEe
Confidence                1222456688887765  667888999999999999999999 89986553

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=3.4e-16  Score=152.81  Aligned_cols=353  Identities=12%  Similarity=0.051  Sum_probs=203.4

Q ss_pred             CccccccC------CCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHH
Q psy12303         74 MFMNQLSC------GLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAF  146 (480)
Q Consensus        74 ~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al  146 (480)
                      +|+++..+      +...+.+. +.+...+....+.. .....++.+.++.+.+.+++.-+ ...+.|+++||+|+..|+
T Consensus        41 ~ylD~~~g~~~~~lGh~~p~i~-~ai~~q~~~~~~~~-~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Al  118 (425)
T d1sffa_          41 EYLDFAGGIAVLNTGHLHPKVV-AAVEAQLKKLSHTC-FQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAV  118 (425)
T ss_dssp             EEEESSHHHHTCTTCBTCHHHH-HHHHHHTTTCSCCC-TTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHH
T ss_pred             EEEEcCcCHHhhcccCCcHHHH-HHHHHHHhhcCCcc-cccccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHH
Confidence            46655432      45556555 44444443322111 11122455566788888888543 246889999999999999


Q ss_pred             HHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCC----------CCeEEeeCCC--CCCCCH--HHHH
Q psy12303        147 LAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGT----------DNCVEVPSDK--RGRLIP--SELE  212 (480)
Q Consensus       147 ~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~----------~~v~~v~~~~--~~~~d~--~~L~  212 (480)
                      +.+|..       .|.     +..|-.....|.....+....|...          ......+...  ......  ....
T Consensus       119 k~ar~~-------t~r-----~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (425)
T d1sffa_         119 KIARAA-------TKR-----SGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASI  186 (425)
T ss_dssp             HHHHHH-------HTC-----CEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHH
T ss_pred             HHhhhh-------hcc-----cceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHH
Confidence            999975       221     3245555667877777776665311          1122222211  111111  1111


Q ss_pred             HHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccce
Q psy12303        213 RLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVT  288 (480)
Q Consensus       213 ~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~  288 (480)
                      ..+.........+++|+++..+...|.+.|    +++|.++|++||+.+|+|+++.|+......+.+ ...++ .+|+++
T Consensus       187 ~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~-~~~gv-~PDi~~  264 (425)
T d1sffa_         187 HRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAM-EQMGV-APDLTT  264 (425)
T ss_dssp             HHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG-GGTTS-CCSEEE
T ss_pred             HHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHH-HhcCC-Ccccee
Confidence            122222222345889999988888887754    899999999999999999999986665555444 45566 789999


Q ss_pred             eCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHH
Q psy12303        289 WNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQI  368 (480)
Q Consensus       289 ~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~  368 (480)
                        ..|.++++++.|+++++++ ..+...   +....            +  ++ .+.+....++.++|+.+-.+.   ..
T Consensus       265 --~gK~l~gG~P~~av~~~~~-i~~~~~---~~~~~------------~--T~-~gnpl~~aaa~a~L~~i~~~~---~~  320 (425)
T d1sffa_         265 --FAKSIAGGFPLAGVTGRAE-VMDAVA---PGGLG------------G--TY-AGNPIACVAALEVLKVFEQEN---LL  320 (425)
T ss_dssp             --ECGGGGTSSCCEEEEEEHH-HHTTSC---TTSBC------------C--SS-SSCHHHHHHHHHHHHHHHHTT---HH
T ss_pred             --cccccCCCcceEEEEEcHH-HHHhhC---CCCCC------------C--CC-CcCHHHHHHHHHHHHHHHHhh---hh
Confidence              5599988889999997754 322211   11000            0  00 111123334444455443333   33


Q ss_pred             HHHHHHHHHH----HHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeee
Q psy12303        369 DRLMELAEYM----VKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQP  444 (480)
Q Consensus       369 ~~~~~l~~~l----~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~  444 (480)
                      ++..++.+++    .+.+++ .+.+.-+ .-.+.++.+.+.........+.       .+...+.+.+.++|.++... .
T Consensus       321 ~~~~~~g~~l~~~l~~~~~~-~~~v~~v-rg~Gl~~~i~f~~~~~~~~~~~-------~~~~~~~~~l~~~Gvl~~~~-g  390 (425)
T d1sffa_         321 QKANDLGQKLKDGLLAIAEK-HPEIGDV-RGLGAMIAIELFEDGDHNKPDA-------KLTAEIVARARDKGLILLSC-G  390 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-CTTEEEE-EEETTEEEEEEBGGGCTTSBCH-------HHHHHHHHHHHHTTEECEEE-S
T ss_pred             hhhhhhhhhhhhhhhhhHhh-CCceEEE-EccccEEEEEEeccCccCCccH-------HHHHHHHHHHHHCCCEEecc-C
Confidence            4444444444    444555 4543322 1223344554443222111111       12356778899999554432 2


Q ss_pred             eCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        445 LNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       445 ~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      . . .+.+|++ ++..+|++||+++++++++.+++
T Consensus       391 ~-~-~n~i~~~-PpL~it~~eid~~l~~l~~al~e  422 (425)
T d1sffa_         391 P-Y-YNVLRIL-VPLTIEDAQIRQGLEIISQCFDE  422 (425)
T ss_dssp             T-T-SCEEEEC-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             C-C-CCEEEEE-CCCCCCHHHHHHHHHHHHHHHHH
Confidence            1 1 4689999 98999999999999999998765

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.5e-16  Score=150.46  Aligned_cols=303  Identities=11%  Similarity=0.060  Sum_probs=191.3

Q ss_pred             HHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC----
Q psy12303        115 TVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL----  190 (480)
Q Consensus       115 ~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~----  190 (480)
                      .++.+.++++.+.+  .+.++++||+|+..|++++|....   +..+..... ...+......|.....+....+-    
T Consensus        86 ~~~~~~~~~~~~~~--~v~~~~sGseA~e~Aik~ar~~~~---~~~~~~~~~-~~i~~~~~~~hg~t~~~~~~~~~~~~~  159 (404)
T d2byla1          86 GEYEEYITKLFNYH--KVLPMNTGVEAGETACKLARKWGY---TVKGIQKYK-AKIVFAAGNFWGRTLSAISSSTDPTSY  159 (404)
T ss_dssp             HHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHHHHHH---HTTCCCTTC-CEEEEETTCCCCCSHHHHTTCCCHHHH
T ss_pred             HHHHHhhhhccccc--ccccccCccccchhHHHHHHHHhh---hcccccccc-ccccccCCCccccccceeccCCCcccc
Confidence            34556778888775  489999999999999999986421   111111111 22455566667655554443221    


Q ss_pred             -----CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEEEeec
Q psy12303        191 -----GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWLHVDA  261 (480)
Q Consensus       191 -----~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l~vD~  261 (480)
                           ....+..+|.+     |++++++++.+.     .+++|++...+...|.+.+    +++|.++|++||+.+|+|+
T Consensus       160 ~~~~p~~~~~~~~p~~-----d~~~l~~~l~~~-----~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DE  229 (404)
T d2byla1         160 DGFGPFMPGFDIIPYN-----DLPALERALQDP-----NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADE  229 (404)
T ss_dssp             TTSCSCCTTEEEECTT-----CHHHHHHHHTST-----TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEEC
T ss_pred             cCCCCCCCCeeEeccc-----CHHHHHHhcCCC-----CeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeec
Confidence                 12245666665     889999988542     3888999988888887765    8999999999999999999


Q ss_pred             cccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcc
Q psy12303        262 AWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKV  340 (480)
Q Consensus       262 a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  340 (480)
                      ++.|+......+.+ ...++ .+|+++  +.|.++++ .+.|.+++++ ++....   .+....+            ++ 
T Consensus       230 V~tGfgR~G~~~a~-~~~gv-~PDi~~--~gK~l~gG~~p~~av~~~~-~i~~~~---~~~~~~~------------T~-  288 (404)
T d2byla1         230 IQTGLARTGRWLAV-DYENV-RPDIVL--LGKALSGGLYPVSAVLCDD-DIMLTI---KPGEHFS------------TY-  288 (404)
T ss_dssp             TTTTTTTTSSSSGG-GGGTC-CCSEEE--ECGGGGTTSSCCEEEEECH-HHHTTS---CTTSSCC------------SS-
T ss_pred             cccccccccccchh-hhcCC-CCCEEE--ECchhhCCCccceeeeech-hhhhcc---CCCCCCc------------CC-
Confidence            99987666655555 55666 589998  55988876 6788888753 333221   1111100            00 


Q ss_pred             ccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC--eEEecCCceeEEEEEeecCccCCCchhhHH
Q psy12303        341 IQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDK--FYLILEPEMVNVSFWYLPTRVRNMPHEKRL  418 (480)
Q Consensus       341 ~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g--~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~  418 (480)
                        .+.+....++.++|+.+-.   .+..++..++.+++.+.|.+ +..  +.-+ .-.+.+..+.+....  ..      
T Consensus       289 --~gnpl~~aaa~a~L~~i~~---~~l~~~~~~~g~~l~~~l~~-l~~~~i~~v-Rg~Gl~~~i~~~~~~--~~------  353 (404)
T d2byla1         289 --GGNPLGCRVAIAALEVLEE---ENLAENADKLGIILRNELMK-LPSDVVTAV-RGKGLLNAIVIKETK--DW------  353 (404)
T ss_dssp             --TTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHT-SCTTTEEEE-EEETTEEEEEECCCS--SC------
T ss_pred             --CcCHHHHHHHHHHHHHHHh---cCchhhhhHhhHHHHHHHHh-hccccceee-eecccEEEEEEecCC--ch------
Confidence              1111233334444544433   33556777788888888887 422  1111 011123333332111  00      


Q ss_pred             HHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        419 NILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       419 ~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                           ...++.+++.++|.++...    + .+.+|++ +...+|++|||++++.|++.++++
T Consensus       354 -----~~~~~~~~l~~~Gvl~~~~----~-~~~i~l~-PpL~it~~~id~~~~~l~~al~~f  404 (404)
T d2byla1         354 -----DAWKVCLRLRDNGLLAKPT----H-GDIIRFA-PPLVIKEDELRESIEIINKTILSF  404 (404)
T ss_dssp             -----CHHHHHHHHHHTTEECEEE----E-TTEEEEC-CCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             -----hHHHHHHHHHhCCeEEecC----C-CCEEEEE-CCcCCCHHHHHHHHHHHHHHHHcC
Confidence                 0235677888999654332    1 4689999 888999999999999999988753

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=1.2e-16  Score=153.60  Aligned_cols=294  Identities=14%  Similarity=0.065  Sum_probs=187.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCC
Q psy12303        111 ILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL  190 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~  190 (480)
                      .+.+.++.+.+.+........+.|+++||+|+..|++.+|..       .|.     +..+......|.....+....|.
T Consensus        78 ~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~-------t~r-----~~ii~~~~~yHG~t~~~~~~s~~  145 (387)
T d1vefa1          78 TPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAH-------TGR-----KKFVAAMRGFSGRTMGSLSVTWE  145 (387)
T ss_dssp             CHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHH-------HSC-----CEEEEETTCCCCSSHHHHHTCCC
T ss_pred             CchHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhh-------ccc-----ceecccccCCCCCccceEeccCC
Confidence            344555556666655444356899999999999999999875       221     32455555567776666655542


Q ss_pred             ---------CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEE
Q psy12303        191 ---------GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWL  257 (480)
Q Consensus       191 ---------~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l  257 (480)
                               ....+..+|.+     |.+.|++.++++      +++|++...+...|.+.+    +++|.++|++||+.+
T Consensus       146 ~~~~~~~~p~~~~~~~~p~~-----d~~~l~~~~~~~------iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~ll  214 (387)
T d1vefa1         146 PKYREPFLPLVEPVEFIPYN-----DVEALKRAVDEE------TAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALL  214 (387)
T ss_dssp             HHHHGGGCSCSSCEEEECTT-----CHHHHHHHCCTT------EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEE
T ss_pred             ccccCCCCCCCCCceEeCCC-----CHHHHHHhcCCC------eEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceE
Confidence                     11356667765     789999888655      899999988888888766    999999999999999


Q ss_pred             EeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCC
Q psy12303        258 HVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       258 ~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  337 (480)
                      ++|+++.|+......+.+ ...++ .+|++++  .|.+++++..+.+..+++ .....   .+.+..+            
T Consensus       215 I~DEV~tGfgR~G~~~~~-~~~~v-~PDi~~~--gK~l~gG~~~~~~~~~~~-~~~~~---~~~~~g~------------  274 (387)
T d1vefa1         215 ILDEIQTGMGRTGKRFAF-EHFGI-VPDILTL--AKALGGGVPLGVAVMREE-VARSM---PKGGHGT------------  274 (387)
T ss_dssp             EEECTTTTTTTTSSSSTH-HHHTC-CCSEEEE--CGGGGTTSSCEEEEEEHH-HHHTS---CTTSSCC------------
T ss_pred             EecccccccCccCCCccc-ccCCc-CCceeee--cccCCCCcccccccccee-eeecc---ccCCccc------------
Confidence            999999987554443333 33455 6899994  588888787888776654 22221   1111111            


Q ss_pred             CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC--CeEEecCCceeEEEEEeecCccCCCchh
Q psy12303        338 DKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPD--KFYLILEPEMVNVSFWYLPTRVRNMPHE  415 (480)
Q Consensus       338 ~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~--g~~~~~~~~~~~v~f~~~~~~~~~~~~~  415 (480)
                            +-....+++.+++..+..-.-.+..++..++.+++.+.|++ +.  .+.-+ .-.+.+..+.+..+.       
T Consensus       275 ------T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~-l~~~~v~~v-rg~Gl~~~ie~~~~~-------  339 (387)
T d1vefa1         275 ------TFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRA-IPSPKIREV-RGMGLMVGLELKEKA-------  339 (387)
T ss_dssp             ------SSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-SCCTTEEEE-EEETTEEEEEESSCS-------
T ss_pred             ------cCCCCcchhhhcccchhhcccccccchHhhhhHHHHHHHHh-cCCCceEEE-eecceEEEEEEeCCc-------
Confidence                  11123344444433322111244567778888999999987 42  22211 011123333332111       


Q ss_pred             hHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhh
Q psy12303        416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       416 ~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                               ...+.+.+.+.|.+++..    + .+.+|++ ++..+|++||+++++++++++
T Consensus       340 ---------~~~~~~~~~~~g~l~~~~----g-~~~ir~~-Ppl~it~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         340 ---------APYIARLEKEHRVLALQA----G-PTVIRFL-PPLVIEKEDLERVVEAVRAVL  386 (387)
T ss_dssp             ---------HHHHHHHHHHHCEECEES----S-TTEEEEC-CCTTCCHHHHHHHHHHHHHHH
T ss_pred             ---------hHHHHHHHHHCCCeEEec----C-CCEEEEE-CCccCCHHHHHHHHHHHHHHh
Confidence                     123445556677544332    3 4789999 889999999999999999875

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.75  E-value=3.3e-17  Score=156.33  Aligned_cols=311  Identities=14%  Similarity=0.073  Sum_probs=205.3

Q ss_pred             hcChhhHHHHHHHHHHHHHHhCCCCC---CeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecC---CCc
Q psy12303        105 EIAPVFILMETVVLEKMRQIIGWQGG---DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSD---QCH  178 (480)
Q Consensus       105 ~~~~~~~~~e~~~~~~la~~~g~~~~---~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~---~~h  178 (480)
                      .......++|....+.+.++||.++.   .-+-..+|+.||+.++.+..+              ||| .|+...   ..|
T Consensus        70 ~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~--------------pgD-~im~~~l~~GGH  134 (470)
T d1rv3a_          70 GGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVE--------------PHG-RIMGLDLPDGGH  134 (470)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTC--------------TTC-EEEEECGGGTCC
T ss_pred             CCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhcC--------------CCC-eEeeeccccCCc
Confidence            34456788999999999999999742   234556899999999888765              667 555533   345


Q ss_pred             hhHHHHHHHcCCC----CCCeEEeeCCC-CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHc
Q psy12303        179 YSVRSCAAVCGLG----TDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY  253 (480)
Q Consensus       179 ~s~~~~~~~~g~~----~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~  253 (480)
                      .++.......+..    .-+....++++ ++.+|.+++++..++.+     |++|++  |.+..-...|++++.+||++.
T Consensus       135 lshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~k-----PklIi~--G~S~y~r~~d~~~~reIad~v  207 (470)
T d1rv3a_         135 LTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFH-----PKLIIA--GTSCYSRNLDYGRLRKIADEN  207 (470)
T ss_dssp             GGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHC-----CSEEEE--CCSSCCSCCCHHHHHHHHHHT
T ss_pred             ccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHhhC-----cceEee--chhhccccCCHHHHHHHHhcc
Confidence            5543111111100    01456777876 48999999999988763     888888  556666778999999999999


Q ss_pred             CcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCch--------------hhHhhhcCC
Q psy12303        254 NMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDG--------------LLISCNQMS  319 (480)
Q Consensus       254 ~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~--------------~~~~~~~~~  319 (480)
                      |+++++|.+|-.|.+....+..|.    +.+|+++.+.||.+.+|.| |++++++..              +........
T Consensus       208 ga~l~~D~aH~aGLIA~g~~~sPl----~~aDvvt~tTHKtlrGPrg-GiI~~~~~~~~~~~~~~~~~~~~~~~~i~~av  282 (470)
T d1rv3a_         208 GAYLMADMAHISGLVVAGVVPSPF----EHCHVVTTTTHKTLRGCRA-GMIFYRRGVRSVDPKTGKEILYNLESLINSAV  282 (470)
T ss_dssp             TCEEEEECTTTHHHHHHTSSCCGG----GTCSEEEEESSGGGCCCSC-EEEEEECSBCC-------CCBCCHHHHHHHHH
T ss_pred             CCeEEecchhhhhhccccccCChh----heeeeeeeehhhhccCCcc-eEEEEccccccccccccchhHHHHHHHHhhhc
Confidence            999999999999888766665532    3689999999999998765 777777641              111111100


Q ss_pred             cccccccccccCcccCCCCccccCCCCCC-chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecC-Cce
Q psy12303        320 AEYLFMQDKLYDVRYDTGDKVIQCGRHND-IFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE-PEM  397 (480)
Q Consensus       320 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~-~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~-~~~  397 (480)
                      -+                  +++++-... ..+...+++......+.++.++..++++.|.+.|.+  .|+.++.. .+.
T Consensus       283 FP------------------g~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~--~G~~v~~ggTdn  342 (470)
T d1rv3a_         283 FP------------------GLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVE--LGYKIVTGGSDN  342 (470)
T ss_dssp             TT------------------TTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSCSS
T ss_pred             Cc------------------cccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHh--CCceeccCCCCC
Confidence            00                  112222222 233334455444456789999999999999999999  79999753 344


Q ss_pred             eEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCC-----cccEEEEec---ccCCCCHHHHHHH
Q psy12303        398 VNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLND-----LPNFFRNII---SSAAVTEGDIDFL  469 (480)
Q Consensus       398 ~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~-----~~~~~R~~~---~~~~~t~~di~~~  469 (480)
                      .++.+...+..+.              ..+..+.|-+-|+. +.....++     .+..+|+..   ......++|+.++
T Consensus       343 Hlvlvdl~~~g~~--------------g~~ae~~Le~~gI~-~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~i  407 (470)
T d1rv3a_         343 HLILVDLRSKGTD--------------GGRAEKVLEACSIA-CNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKV  407 (470)
T ss_dssp             SEEEEEGGGGTCC--------------HHHHHHHHHHTTEE-CEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHH
T ss_pred             ceEEEeecccCCc--------------HHHHHHHHHHcCcE-ECCCcCCCCCCCCCCCeeEecCHHHHhCCCCHHHHHHH
Confidence            4555543332221              23444556566643 33222111     146799984   3466788999999


Q ss_pred             HHHHHHhh
Q psy12303        470 LTEMDRLG  477 (480)
Q Consensus       470 ~~~l~~~~  477 (480)
                      .+.|.+++
T Consensus       408 A~~I~~~l  415 (470)
T d1rv3a_         408 AHFIHRGI  415 (470)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988765

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.74  E-value=4.6e-17  Score=158.96  Aligned_cols=336  Identities=16%  Similarity=0.097  Sum_probs=187.9

Q ss_pred             CCChHHhHHHHHHHHcCcCCcchhcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcC
Q psy12303         82 GLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKG  161 (480)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g  161 (480)
                      +...+.++ +.+...++........    .....++.+.+.++.+.. ..+.|+++||+|+..|++.+|..       .|
T Consensus        67 Gh~hp~i~-~ai~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~-~~v~f~~sGseA~e~Alk~ar~~-------t~  133 (427)
T d2gsaa_          67 GHAHPEVI-EALKVAMEKGTSFGAP----CALENVLAEMVNDAVPSI-EMVRFVNSGTEACMAVLRLMRAY-------TG  133 (427)
T ss_dssp             CBTCHHHH-HHHHHHHTTCSCCSSC----CHHHHHHHHHHHHHSTTC-SEEEEESSHHHHHHHHHHHHHHH-------HC
T ss_pred             cCCcHHHH-HHHHHHHHhcCccccc----hhHHHHHHHHHHhhCCcc-ccccccCCcHHHHHHHHHHHHHh-------cC
Confidence            44456555 5555555543322221    234455667777776543 46889999999999999999875       22


Q ss_pred             CCccCCceEEEecCCCchhHHHHH-------HHcCCCC---------CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCcc
Q psy12303        162 LSAIKGQLVMFTSDQCHYSVRSCA-------AVCGLGT---------DNCVEVPSDKRGRLIPSELERLVLERKAKGDIP  225 (480)
Q Consensus       162 ~~~~~g~~~vl~~~~~h~s~~~~~-------~~~g~~~---------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~  225 (480)
                      .     +.+|-.....|.....++       ...+...         .....+|.     -|+++|++.+++.   ...+
T Consensus       134 r-----~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~~le~~~~~~---~~~i  200 (427)
T d2gsaa_         134 R-----DKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-----NDLEAVKALFAEN---PGEI  200 (427)
T ss_dssp             C-----CEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECT-----TCHHHHHHHHTTS---TTTE
T ss_pred             C-----CeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCc-----chHHHHHHHHHhC---CCCe
Confidence            1     223444444554432221       1122210         12233333     3899999988753   2348


Q ss_pred             EEEEeccCCCccccccC----hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccc
Q psy12303        226 FFVNCTSGTTVLGAFDP----IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQC  301 (480)
Q Consensus       226 ~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~  301 (480)
                      ++|++.......|.+.|    +++|.++|++||+++|+|+++.|+ .....+.+ ...++ ..|+++++  |.++++++.
T Consensus       201 aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~~~~~-~~~gi-~PDi~~~g--K~lggG~p~  275 (427)
T d2gsaa_         201 AGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQ-EKFGV-TPDLTTLG--KIIGGGLPV  275 (427)
T ss_dssp             EEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTCHH-HHTTC-CCSEEEEC--GGGGTTSCC
T ss_pred             EEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc-eecccchH-HhcCC-CHHHHhhh--hccCCCcce
Confidence            89999998888898877    999999999999999999999886 33333333 34556 68999954  777777777


Q ss_pred             eEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q psy12303        302 STIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKK  381 (480)
Q Consensus       302 g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~  381 (480)
                      |.++.++ ++.+..... ..+...           +++   .+.+....++.++|+.+-.+.   ..++..++.++|.+.
T Consensus       276 ~a~~~~~-~i~~~~~~~-~~~~~~-----------~T~---~gnpla~AAala~Le~i~~~~---l~~~~~~~g~~l~~~  336 (427)
T d2gsaa_         276 GAYGGKR-EIMQLVAPA-GPMYQA-----------GTL---SGNPLAMTAGIKTLELLRQPG---TYEYLDQITKRLSDG  336 (427)
T ss_dssp             EEEEECH-HHHTTBTTT-SSBCCC-----------CTT---TTCHHHHHHHHHHHHHHTSTT---HHHHHHHHHHHHHHH
T ss_pred             eeeeehH-HHHHHhccc-CCCcCC-----------CCC---CCCchhhHHHHHhhHHhhhhh---HHhhhhHHHHHHHHH
Confidence            8877654 444322111 111100           000   111122333334444443322   334555555555555


Q ss_pred             H----hcCCCC-eEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEec
Q psy12303        382 I----KSMPDK-FYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNII  456 (480)
Q Consensus       382 l----~~~~~g-~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~  456 (480)
                      |    .+ .+. ..+.  ...+++.+.+....+.+...... ..+ +....+.+.+.++|+ ++.+.   +   ..++. 
T Consensus       337 L~~l~~~-~~~~~~v~--~~ggm~~i~~~~~~v~~~~~~~~-~d~-~~~~~~~~~ll~~Gv-~l~p~---~---~~~~~-  403 (427)
T d2gsaa_         337 LLAIAQE-TGHAACGG--QVSGMFGFFFTEGPVHNYEDAKK-SDL-QKFSRFHRGMLEQGI-YLAPS---Q---FEAGF-  403 (427)
T ss_dssp             HHHHHHH-TTCCCEEE--EETTEEEEESSSCCCCSHHHHTT-SCH-HHHHHHHHHHHHTTE-ECCSS---T---TSCEE-
T ss_pred             HHHHHhh-cCCCcEEc--ccCCeEEEEEeccCCCCHHHhhc-ccH-HHHHHHHHHHHHCCE-EECCC---C---Cccee-
Confidence            5    44 221 2221  11234445443332221111000 001 112456778888884 33331   1   12222 


Q ss_pred             ccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        457 SSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       457 ~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                      ++..+|++|||++++++++++++|
T Consensus       404 ~~l~~Te~dId~~l~al~~al~~L  427 (427)
T d2gsaa_         404 TSLAHTEEDIDATLAAARTVMSAL  427 (427)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhC
Confidence            567889999999999999999876

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.73  E-value=2.5e-16  Score=149.19  Aligned_cols=224  Identities=14%  Similarity=0.057  Sum_probs=164.3

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA  185 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~  185 (480)
                      ..|....+|+.    ++++-|.+.  ++++++|..|+..++.+...              +|+ +|+++...|......+
T Consensus        57 ~nPT~~~LE~~----la~LEg~~~--a~~~~SGmaAi~~~l~~l~~--------------~Gd-~vl~~~~~Yg~t~~l~  115 (392)
T d1gc0a_          57 SNPTLNLLEAR----MASLEGGEA--GLALASGMGAITSTLWTLLR--------------PGD-EVLLGNTLYGCTFAFL  115 (392)
T ss_dssp             CCHHHHHHHHH----HHHHHTCSE--EEEESSHHHHHHHHHHHHCC--------------TTC-EEEEESSCCSHHHHHH
T ss_pred             CChHHHHHHHH----HHHHhCCcc--eeehhhHHHHHHHHHHhhcc--------------CCC-eeecccccchhhhhhh
Confidence            45666666665    888888765  78889999999888877754              556 6667666766666655


Q ss_pred             HHc-CCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccc
Q psy12303        186 AVC-GLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWG  264 (480)
Q Consensus       186 ~~~-g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~  264 (480)
                      +.. ..-+.++.+++..     |+++++++++++      |++|.+..++||+..+.||++|+++|+++|+.++||.+++
T Consensus       116 ~~~~~~~Gi~~~~~d~~-----d~~~~~~ai~~~------t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~a  184 (392)
T d1gc0a_         116 HHGIGEFGVKLRHVDMA-----DLQALEAAMTPA------TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYC  184 (392)
T ss_dssp             HHTGGGGTCEEEEECTT-----CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTT
T ss_pred             hhhhccCCcccccCCcc-----CHHHHHHhCCCC------CeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCcc
Confidence            443 2111277777654     899999999876      9999999999999999999999999999999999999998


Q ss_pred             ccccccccccCcccCCCCCCccceeCccccCCCcc--cceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcccc
Q psy12303        265 GGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL--QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQ  342 (480)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~--~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  342 (480)
                      .+...-| ..+       ++|++..|..|++++-.  -.|+++.+ ...+..........+                   
T Consensus       185 tP~~~~P-l~~-------GaDivihS~TKyi~Ghsd~~~G~v~~~-~~~~~~~r~~~~~~~-------------------  236 (392)
T d1gc0a_         185 TPYLQRP-LEL-------GADLVVHSATKYLSGHGDITAGIVVGS-QALVDRIRLQGLKDM-------------------  236 (392)
T ss_dssp             HHHHCCG-GGG-------TCSEEEEETTTTTTCSSSCCCEEEEEC-HHHHHHHHHTHHHHH-------------------
T ss_pred             CccccCh-HHh-------CCCEEEEecceeecCCcccccccccch-hHHHHHHHHHHHHHc-------------------
Confidence            8766333 355       89999999999998642  24555544 433332110000000                   


Q ss_pred             CCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        343 CGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       343 ~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      .|.......+|..++.  .+.+..+++++.+++..+.+.|++ +|.++-+
T Consensus       237 ~G~~~~p~da~ll~rg--l~TL~lRm~~~~~nA~~lA~~L~~-hp~V~~V  283 (392)
T d1gc0a_         237 TGAVLSPHDAALLMRG--IKTLNLRMDRHCANAQVLAEFLAR-QPQVELI  283 (392)
T ss_dssp             TCCCCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHT-CTTEEEE
T ss_pred             cCCcCChhhHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHh-CCCccEE
Confidence            1222456678887765  677889999999999999999999 8888744

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.73  E-value=2.2e-16  Score=152.11  Aligned_cols=324  Identities=12%  Similarity=0.020  Sum_probs=193.0

Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHH
Q psy12303        107 APVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAA  186 (480)
Q Consensus       107 ~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~  186 (480)
                      +|....+|++    +++++|.+.  ++++++||.|+..|++++.-+             +|+ +|+++..++++...++.
T Consensus        20 G~~~~~fE~~----~~~~~~~~~--~~~~~SgT~Al~lal~~l~~~-------------~gd-eVi~p~~t~~a~~~~~~   79 (374)
T d1o69a_          20 GEFVNRFEQS----VKDYSKSEN--ALALNSATAALHLALRVAGVK-------------QDD-IVLASSFTFIASVAPIC   79 (374)
T ss_dssp             THHHHHHHHH----HHHHHCCSE--EEEESCHHHHHHHHHHHTTCC-------------TTC-EEEEESSSCGGGTHHHH
T ss_pred             CHHHHHHHHH----HHHHHCcCe--EEEeCCHHHHHHHHHHHcCCC-------------CcC-EEEeCCcchHhhHHHHh
Confidence            5666777766    788889875  999999999999999876321             455 89999999999999999


Q ss_pred             HcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccccc
Q psy12303        187 VCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGG  266 (480)
Q Consensus       187 ~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~  266 (480)
                      .+|.   ..++++++++...+..+.++.....   ..++++|++++.   .|...++++|.++|+++|++|+.|+||+.+
T Consensus        80 ~~g~---~pv~~Di~~~~~~~~~~~~~~~~~~---~~~~~aii~~~~---~G~~~d~~~i~~~~~~~~i~vIED~a~a~g  150 (374)
T d1o69a_          80 YLKA---KPVFIDCDETYNIDVDLLKLAIKEC---EKKPKALILTHL---YGNAAKMDEIVEICKENDIVLIEDAAEALG  150 (374)
T ss_dssp             HTTC---EEEEECBCTTSSBCHHHHHHHHHHC---SSCCCEEEEECG---GGCCCCHHHHHHHHHHTTCEEEEECTTCTT
T ss_pred             hccc---eeEecccccccccccccccccchhc---cccccccccccc---ccchhhhHHHHHHhhccCcchhhhhhhhhc
Confidence            9998   7889998876544443333332222   223777777555   799999999999999999999999999998


Q ss_pred             ccccccccCcccCCCCCCccceeCcc--ccCCCcccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCC
Q psy12303        267 LLLSKKYRHPRLTGIERADSVTWNPH--KLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCG  344 (480)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~D~~~~s~h--K~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  344 (480)
                      ...-..     .-|. ..|+.++|+|  |.+.+ .+.|++++++.+...............     ...+..  ..+...
T Consensus       151 ~~~~~~-----~~G~-~gd~~~fSf~~~K~l~t-geGG~i~tnn~~~~~~~~~~~~~g~~~-----~~~~~~--~~~G~N  216 (374)
T d1o69a_         151 SFYKNK-----ALGT-FGEFGVYSYNGNKIITT-SGGGMLIGKNKEKIEKARFYSTQAREN-----CLHYEH--LDYGYN  216 (374)
T ss_dssp             CEETTE-----ETTS-SSSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHTBTCCCS-----SSSCCC--SSCCCB
T ss_pred             ceECCe-----ecCC-CCceEEEeccCcccccc-ccceeehhhhHHHHHhhcccccccccc-----cccccc--ccCCcc
Confidence            653222     1121 3465555554  88876 456888888887665443221110000     000000  011111


Q ss_pred             CCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCce------eEEEEEeecCccCCCchh---
Q psy12303        345 RHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEM------VNVSFWYLPTRVRNMPHE---  415 (480)
Q Consensus       345 r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~------~~v~f~~~~~~~~~~~~~---  415 (480)
                      .+..-+.+...+..  .+.+.+.+++.+++++++.+.|.+ ...+.. ..+..      ..+.+.............   
T Consensus       217 ~rm~ei~Aaig~~q--L~~l~~~i~~r~~i~~~y~~~L~~-~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  292 (374)
T d1o69a_         217 YRLSNVLGAIGVAQ--MEVLEQRVLKKREIYEWYKEFLGE-YFSFLD-ELENSRSNRWLSTALINFDKNELNACQKDINI  292 (374)
T ss_dssp             CBCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTT-TEECCC-CCTTEECCCSSEEEEESCCGGGSCCCCEEEEC
T ss_pred             ccccchhhhhhHHH--HhhhhhhcchhHHHHHHHHhhccc-cccccc-cccCCCCChhheeeeecccccccccccccccc
Confidence            22333333333333  566788888889999999999987 432211 11111      111111010000000000   


Q ss_pred             -hHHHHhhhhhHHHHHHHHhcccEEEe-ee--------------eeCC----cccEEEEecccCCCCHHHHHHHHHHHHH
Q psy12303        416 -KRLNILGEITPILKGRMMQAGTMMVG-YQ--------------PLND----LPNFFRNIISSAAVTEGDIDFLLTEMDR  475 (480)
Q Consensus       416 -~~~~~l~~~~~~i~~~l~~~g~~~~~-~~--------------~~~~----~~~~~R~~~~~~~~t~~di~~~~~~l~~  475 (480)
                       ............+.+.|.+.|+-... +.              ..+.    ....+.+. +++..|++||+++++.|.+
T Consensus       293 ~~~~~~~~~~r~~l~~~L~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP-~~~~lt~~di~~I~~~I~~  371 (374)
T d1o69a_         293 SQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLP-SGTAMSKDDVYEISKLILK  371 (374)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEEC-CCTTCCHHHHHHHHHHHHH
T ss_pred             chhhccchhhHHHHHHHHHHCCCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCEEECc-CCCCCCHHHHHHHHHHHHH
Confidence             00000000123566777777742110 00              0000    02457777 7889999999999999998


Q ss_pred             hhc
Q psy12303        476 LGH  478 (480)
Q Consensus       476 ~~~  478 (480)
                      +++
T Consensus       372 ~lk  374 (374)
T d1o69a_         372 SIK  374 (374)
T ss_dssp             HHC
T ss_pred             HHC
Confidence            764

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.72  E-value=1.6e-15  Score=146.87  Aligned_cols=303  Identities=12%  Similarity=0.058  Sum_probs=176.4

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEe-cCCCchhHHHHHHHcCCCC--
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFT-SDQCHYSVRSCAAVCGLGT--  192 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~-~~~~h~s~~~~~~~~g~~~--  192 (480)
                      .+.+.++++.+.+.  +.|+.+||+|+..|++++|....    ..... .++...++. ....|..........+...  
T Consensus        85 ~~~~~~~~~~~~~~--v~~~~sgs~a~~~a~k~ar~~~~----~~~~~-~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~  157 (404)
T d1z7da1          85 ICERYLTNLLGYDK--VLMMNTGAEANETAYKLCRKWGY----EVKKI-PENMAKIVVCKNNFSGRTLGCISASTTKKCT  157 (404)
T ss_dssp             HHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHHHHHH----HTSCC-CTTCCEEEEETTC------------------
T ss_pred             HHHHhhhhccccce--eeeeccccchHHHHHHHHHHHHh----hcccc-cccccccccccccCCCCcccccccccccccc
Confidence            44566777777654  89999999999999999987521    11111 111223333 3334444433333332211  


Q ss_pred             -------CCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC----hHHHHHHHHHcCcEEEeec
Q psy12303        193 -------DNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP----IEEIADICQKYNMWLHVDA  261 (480)
Q Consensus       193 -------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~~~~~~~l~vD~  261 (480)
                             ..+..+|.+     +.+.+++.+.+     ..+++|++...+...|.+.|    +++|.++|++||+++++|+
T Consensus       158 ~~~~~~~~~~~~~~~~-----~~~~l~~~~~~-----~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DE  227 (404)
T d1z7da1         158 SNFGPFAPQFSKVPYD-----DLEALEEELKD-----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADE  227 (404)
T ss_dssp             --------CEEEECTT-----CHHHHHHHHTS-----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred             cCCCCCCccccccccc-----hHHHHHHHhcC-----CCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEc
Confidence                   123334433     56666666543     23899999999888898876    9999999999999999999


Q ss_pred             cccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcc
Q psy12303        262 AWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKV  340 (480)
Q Consensus       262 a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  340 (480)
                      ++.|+......+.+ ...++ .+|+++  ..|.++++ .++|+++.++ ++....   .+....+            ++ 
T Consensus       228 V~tGfgRtG~~~~~-e~~gv-~PDivt--~gK~l~gG~~p~~~v~~~~-~i~~~~---~~~~~~~------------T~-  286 (404)
T d1z7da1         228 VQTGLGRTGKLLCV-HHYNV-KPDVIL--LGKALSGGHYPISAVLAND-DIMLVI---KPGEHGS------------TY-  286 (404)
T ss_dssp             TTTTTTTTSSSSGG-GGGTC-CCSEEE--ECGGGGTTSSCCEEEEECH-HHHTTC---CTTCCCC------------TT-
T ss_pred             CccCCCcccccccc-cccCC-CCCEEE--EcccccCCCCCcccccchH-HHHccC---CCCCcCc------------CC-
Confidence            99887665555554 45566 689998  55888766 5788887654 333221   1111100            00 


Q ss_pred             ccCCCCCCchHHHHHHHHhcHHHHHHH-HHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCccCCCchhhHHH
Q psy12303        341 IQCGRHNDIFKLWLQWRAKGDEGFEKQ-IDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLN  419 (480)
Q Consensus       341 ~~~~r~~~~l~~~~~l~~~g~~~~~~~-~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~  419 (480)
                        .+.+....++.++|+.+-.+.+.+. .+....+.+.+.+.+++ .+.+.-+. -.+.++.+.+..+...         
T Consensus       287 --~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~vr-g~Gl~~~i~~~~~~~~---------  353 (404)
T d1z7da1         287 --GGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKD-SKIVRDVR-GKGLLCAIEFKNELVN---------  353 (404)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT-CTTEEEEE-EETTEEEEEECTTTCC---------
T ss_pred             --CCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhc-CCCeEEEE-eeCcEEEEEEcCCccc---------
Confidence              1222233344444554433333333 33344456666666766 55543221 1223344444332211         


Q ss_pred             HhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        420 ILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       420 ~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                           ..++...+.++|.++ .+.   + .+.+|++ ++..+|+++|+++++.|++.++++
T Consensus       354 -----~~~~~~~l~~~Gl~~-~~~---~-~~~ir~~-Ppl~it~~~id~~~~~l~~alk~~  403 (404)
T d1z7da1         354 -----VLDICLKLKENGLIT-RDV---H-DKTIRLT-PPLCITKEQLDECTEIIVKTVKFF  403 (404)
T ss_dssp             -----HHHHHHHHHHTTEEC-CEE---T-TTEEEEC-CCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHhCCeEE-ecC---C-CCEEEEE-CCcCCCHHHHHHHHHHHHHHHHhh
Confidence                 235677888899543 221   2 4689998 888999999999999999998763

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.71  E-value=2.8e-16  Score=152.78  Aligned_cols=325  Identities=10%  Similarity=0.011  Sum_probs=190.4

Q ss_pred             hHHhHHHHHHHHcC-cCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCC--hhHH---HHHHHHHHHHhcCch
Q psy12303         85 VVSMAGEWLIATAN-TNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPG--GSIS---NLYAFLAARHKMFPT  156 (480)
Q Consensus        85 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~g--gt~a---~~~al~~~~~~~~~~  156 (480)
                      ++++ .+......+ .....|....+..++.+++.+++.+..+.  ++..++.+.+  ++.+   +...+++..+     
T Consensus        48 ~~~V-~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~-----  121 (401)
T d7aata_          48 LNCV-RKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFK-----  121 (401)
T ss_dssp             CHHH-HHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCT-----
T ss_pred             CHHH-HHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcC-----
Confidence            3443 344444433 33346777788889998888888776654  3344444332  2222   2222222222     


Q ss_pred             hHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCC--CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCC
Q psy12303        157 YKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSD--KRGRLIPSELERLVLERKAKGDIPFFVNCTSGT  234 (480)
Q Consensus       157 ~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~  234 (480)
                               ||+ .|+++++.++.+...+...|.   +++.+|+.  .++..+.+.+.+.+...   ..+++++++++++
T Consensus       122 ---------pGd-~Vlv~~P~y~~y~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iii~~p~  185 (401)
T d7aata_         122 ---------FSR-DVYLPKPSWGNHTPIFRDAGL---QLQAYRYYDPKTCSLDFTGAMEDISKI---PEKSIILLHACAH  185 (401)
T ss_dssp             ---------TCC-EEEEEESCCTTHHHHHHHTTC---EEEEEECEETTTTEECHHHHHHHHTTS---CTTCEEEEESSSC
T ss_pred             ---------CCc-eEEEecCCCcchhhHHHHcCC---eEEEEeccccccccccHHHHHHHHhcC---CCceEEEEecCCC
Confidence                     667 888999999999999999998   88889874  34677888887777542   2348999999999


Q ss_pred             CccccccC---hHHHHHHHHHcCcEEEeeccccccccccccccC---ccc-CCCCCCccceeCccccCC-CcccceEEEE
Q psy12303        235 TVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH---PRL-TGIERADSVTWNPHKLMG-TLLQCSTIHF  306 (480)
Q Consensus       235 ~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~---~~~-~~~~~~D~~~~s~hK~~~-~p~~~g~~~~  306 (480)
                      ||||.+.+   +++|.++|++|+++++.|++|....+.......   ... ...... .++.++.|.++ .+..+|++..
T Consensus       186 NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~s~sk~~~~~G~RiG~~~~  264 (401)
T d7aata_         186 NPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDV-VLSQSYAKNMGLYGERAGAFTV  264 (401)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCC-EEEEECTTTSCCGGGCEEEEEE
T ss_pred             CCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhccc-ceeEeccccceeeccccceeec
Confidence            99999965   788999999999999999999987653211100   000 001112 23345556555 4468899887


Q ss_pred             eCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--------cHHHHHHHHHHHHHHHHHH
Q psy12303        307 KQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--------GDEGFEKQIDRLMELAEYM  378 (480)
Q Consensus       307 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--------g~~~~~~~~~~~~~l~~~l  378 (480)
                      ...... ..... ...+......          ...+   ...+........+        ....++++.++..+.++.+
T Consensus       265 ~~~~~~-~~~~~-~~~~~~~~~~----------~~~~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l  329 (401)
T d7aata_         265 ICRDAE-EAKRV-ESQLKILIRP----------MYSN---PPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQL  329 (401)
T ss_dssp             ECSSHH-HHHHH-HHHHHHHHHH----------HHSS---CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHH-HHHHH-HHHHHHHhhc----------cccc---cchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665221 11000 0000000000          0000   0111111111111        1344566677778888999


Q ss_pred             HHHHhcCCC-C--eEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEe
Q psy12303        379 VKKIKSMPD-K--FYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNI  455 (480)
Q Consensus       379 ~~~l~~~~~-g--~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~  455 (480)
                      .+.|++ .. .  +.. .+|+.++++|.    .+               +.+..++|.++..+++.+    |    .|++
T Consensus       330 ~~~L~~-~~~~~~~~~-~~~~~G~F~~~----~l---------------s~e~~~~L~~e~gV~~~p----g----~Ris  380 (401)
T d7aata_         330 VSNLKK-EGSSHNWQH-ITDQIGMFCFT----GL---------------KPEQVERLTKEFSIYMTK----D----GRIS  380 (401)
T ss_dssp             HHHHHH-TTCCSCCHH-HHHCCSSEEEC----CC---------------CHHHHHHHHHHHCEECCT----T----CEEE
T ss_pred             HHHHHH-hCCCCCcce-ECCCCeEEEec----CC---------------CHHHHHHHHHhCCEEECC----C----cEEE
Confidence            999988 32 1  222 24667777662    11               123345554543344433    2    4998


Q ss_pred             cccCCCCHHHHHHHHHHHHHhhc
Q psy12303        456 ISSAAVTEGDIDFLLTEMDRLGH  478 (480)
Q Consensus       456 ~~~~~~t~~di~~~~~~l~~~~~  478 (480)
                      ++.  .++++|++++++|.++++
T Consensus       381 ~a~--~~~~~i~~la~ai~~v~k  401 (401)
T d7aata_         381 VAG--VASSNVGYLAHAIHQVTK  401 (401)
T ss_dssp             GGG--CCTTTHHHHHHHHHHHHC
T ss_pred             ecc--CCHHHHHHHHHHHHHHhC
Confidence            543  467889999999998864

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=2.6e-15  Score=141.91  Aligned_cols=225  Identities=14%  Similarity=0.116  Sum_probs=164.4

Q ss_pred             hcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH
Q psy12303        105 EIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC  184 (480)
Q Consensus       105 ~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~  184 (480)
                      ...|....+|+.    ++++-|.+.  .+.+++|..|+..++.+...              +|+ .|+++...|......
T Consensus        47 ~~nPt~~~le~~----la~LEgg~~--a~~~sSGMaAi~~~l~~l~~--------------~gd-~vv~~~~~yg~t~~~  105 (384)
T d1cs1a_          47 RGNPTRDVVQRA----LAELEGGAG--AVLTNTGMSAIHLVTTVFLK--------------PGD-LLVAPHDCYGGSYRL  105 (384)
T ss_dssp             TCCHHHHHHHHH----HHHHHTCSE--EEEESSHHHHHHHHHHHHCC--------------TTC-EEEEETTCCHHHHHH
T ss_pred             CCCHHHHHHHHH----HHHHhCCCc--eEEecChHHHHHHHHhhccc--------------ccc-eecccccccchhhhh
Confidence            356777777766    778877654  88999999999888877654              556 677777777665554


Q ss_pred             HHH-cCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccc
Q psy12303        185 AAV-CGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW  263 (480)
Q Consensus       185 ~~~-~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~  263 (480)
                      +.. +......+.++...     |.++++++++++      |++|.++.++||+..+.||++|+++|+++|+.++||.++
T Consensus       106 ~~~~~~~~g~~~~~~d~~-----d~~~~~~~~~~~------t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~  174 (384)
T d1cs1a_         106 FDSLAKRGCYRVLFVDQG-----DEQALRAALAEK------PKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTF  174 (384)
T ss_dssp             HHHHHTTTSCEEEEECTT-----CHHHHHHHHHTC------CSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred             hhhhhcccccccccccCC-----CHHHHHhhcccc------ccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccc
Confidence            433 33322255555543     888999988876      899999999999999999999999999999999999999


Q ss_pred             cccccccccccCcccCCCCCCccceeCccccCCCcc--cceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccc
Q psy12303        264 GGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL--QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVI  341 (480)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~--~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  341 (480)
                      +.+.+.-| ..+       ++|+++.|..|++++--  -.|+++.+++.......... ..                   
T Consensus       175 atP~~~~P-l~~-------GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~-~~-------------------  226 (384)
T d1cs1a_         175 LSPALQNP-LAL-------GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWA-NN-------------------  226 (384)
T ss_dssp             TCTTTCCG-GGG-------TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHH-HH-------------------
T ss_pred             cCcccccc-ccc-------CCCEEEEccccccccCCCcccccccCCchhhhhhhhhhh-hh-------------------
Confidence            87755333 345       89999999999998653  24666665654433211000 00                   


Q ss_pred             cCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        342 QCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       342 ~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                       .|.......+|+.++.  .+.+.-+++++.+++..+.+.|++ +|.++-+.
T Consensus       227 -~G~~~~p~~a~ll~rg--L~TL~lRm~~~~~nA~~lA~~L~~-hp~V~~V~  274 (384)
T d1cs1a_         227 -IGVTGGAFDSYLLLRG--LRTLVPRMELAQRNAQAIVKYLQT-QPLVKKLY  274 (384)
T ss_dssp             -HTCBCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTT-CTTEEEEE
T ss_pred             -hhhccccccHHHHhhc--cchhHHHHHHHHHHHHHHHHhccc-CCceeeee
Confidence             1111355677877664  677889999999999999999999 89886554

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.71  E-value=1.5e-17  Score=159.59  Aligned_cols=343  Identities=11%  Similarity=-0.042  Sum_probs=181.0

Q ss_pred             ccccccCCCC-hHHhHHHHHHHHcCcCC---cchh---cChhhHHHHHHHHHHHHHHhCCCCC-CeEECCChhHHHHHHH
Q psy12303         75 FMNQLSCGLD-VVSMAGEWLIATANTNM---FTYE---IAPVFILMETVVLEKMRQIIGWQGG-DSILAPGGSISNLYAF  146 (480)
Q Consensus        75 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~---~~~~---~~~~~~~~e~~~~~~la~~~g~~~~-~~~~t~ggt~a~~~al  146 (480)
                      -++|.++|.. |.+++..+.....|-+.   ...+   .++.+.++.+++++.++++++++++ .+++++|++++++.+.
T Consensus         4 ~~nF~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~   83 (360)
T d1w23a_           4 VFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTML   83 (360)
T ss_dssp             CEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHH
T ss_pred             eeEeCCCCcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHH
Confidence            3566666544 55555443333433211   1111   2677788889999999999999765 5777777777776666


Q ss_pred             HHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccE
Q psy12303        147 LAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPF  226 (480)
Q Consensus       147 ~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~  226 (480)
                      ......             +++ ++++....|++ .+.+..+......++...........++.+++....         
T Consensus        84 ~~~~~~-------------~~~-~v~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  139 (360)
T d1w23a_          84 PMNLLT-------------KGT-IGNYVLTGSWS-EKALKEAKLLGETHIAASTKANSYQSIPDFSEFQLN---------  139 (360)
T ss_dssp             HHHHCC-------------TTC-EEEEEECSHHH-HHHHHHHHTTSEEEEEEECGGGTSCSCCCGGGCCCC---------
T ss_pred             Hhhhcc-------------cCc-ccceeeccchh-hhhHHHHHHhhhcceeeccccccccchhhhhhcccc---------
Confidence            554432             223 44443333333 333333322111333333332222333333333222         


Q ss_pred             EEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEE
Q psy12303        227 FVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHF  306 (480)
Q Consensus       227 ~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~  306 (480)
                       +..++.+|.+|.+.|+++|.++|+++|+++++|++++.+..+.+..++       ++|+++++.||++.  .+.|+++.
T Consensus       140 -~~~~~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~-------~vd~~~~~~~k~~~--~~~~~~~~  209 (360)
T d1w23a_         140 -ENDAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQF-------GMIYAGAQKNLGPS--GVTVVIVK  209 (360)
T ss_dssp             -TTEEEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGGC-------SEEEEETTTTTSCT--TCEEEEEE
T ss_pred             -cccceeEecCCccccceeeeeccccceeeEEeeccccccccccccccc-------cceEEeeccccccC--CcceeeEe
Confidence             223455677899999999999999999999999999999999988888       89999988888644  34555553


Q ss_pred             eCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12303        307 KQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM  385 (480)
Q Consensus       307 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~-~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~  385 (480)
                      + ........ ....+.......   .......+. ..... ........+..  ..+.....++....+......... 
T Consensus       210 ~-~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-  280 (360)
T d1w23a_         210 K-DLLNTKVE-QVPTMLQYATHI---KSDSLYNTP-PTFSIYMLRNVLDWIKD--LGGAEAIAKQNEEKAKIIYDTIDE-  280 (360)
T ss_dssp             H-HHHCSCCT-TCCGGGCHHHHH---HTTTCSSCC-CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             c-hhhhcccc-cCCcchhhhhhh---hhhhhcccc-cceeeechhHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHhh-
Confidence            3 22211110 111111000000   000000000 00000 01111111111  112233334444444455555444 


Q ss_pred             CCCeE-EecCC---ceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCC
Q psy12303        386 PDKFY-LILEP---EMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAV  461 (480)
Q Consensus       386 ~~g~~-~~~~~---~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~  461 (480)
                      ...+. +..++   ..+.++|.+.. ..              ...++...|.++|+....  +... -+.+|+| +...+
T Consensus       281 ~~~~~~~~~~~~~rS~~vvsf~i~~-~~--------------~~~~~~~~l~~~GI~~~~--G~~~-~ggiRiS-~~~~~  341 (360)
T d1w23a_         281 SNGFYVGHAEKGSRSLMNVTFNLRN-EE--------------LNQQFLAKAKEQGFVGLN--GHRS-VGGCRAS-IYNAV  341 (360)
T ss_dssp             TTTSSEESSCGGGBCSSEEEEECSS-HH--------------HHHHHHHHHHHTTEESCB--CCTT-TCSEEEE-CCTTS
T ss_pred             cccccccCCChhhcceeEEEEEcCC-Cc--------------cHHHHHHHHHHCCCeeee--CCCc-cCcEEEE-eeCCC
Confidence            33333 32222   23467775421 10              124566777788844221  2222 2359999 77788


Q ss_pred             CHHHHHHHHHHHHHhhcc
Q psy12303        462 TEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       462 t~~di~~~~~~l~~~~~~  479 (480)
                      |.|||++|++.++++.++
T Consensus       342 t~e~V~~Li~~~~~~~~~  359 (360)
T d1w23a_         342 PIDACIALRELMIQFKEN  359 (360)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            999999999999988653

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=4.1e-15  Score=144.73  Aligned_cols=311  Identities=12%  Similarity=0.014  Sum_probs=187.1

Q ss_pred             HHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC--
Q psy12303        114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG--  191 (480)
Q Consensus       114 e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~--  191 (480)
                      ..++.+.+.+..+.+...+.|+++||+|+..|++.+|...    ..+|.   +.+..|......|.....++...+-.  
T Consensus        88 ~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~----~~~g~---~~~~ii~~~~~yHG~t~~a~~~t~~~~~  160 (429)
T d1s0aa_          88 AIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYW----QAKGE---ARQRFLTFRNGYHGDTFGAMSVCDPDNS  160 (429)
T ss_dssp             HHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHH----HHHTC---CCCEEEEETTCCCCSSHHHHTTSCTTTT
T ss_pred             HHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhhee----ecccc---cccEEEEecCCccccchhhhhhcCCccc
Confidence            3445667777777666679999999999999999998751    22332   22335556666677776666665421  


Q ss_pred             --------CCCeEEeeCCC---CCCCC---HHHHHHHHHHHHHCCCccEEEEeccCCCccc-ccc-C---hHHHHHHHHH
Q psy12303        192 --------TDNCVEVPSDK---RGRLI---PSELERLVLERKAKGDIPFFVNCTSGTTVLG-AFD-P---IEEIADICQK  252 (480)
Q Consensus       192 --------~~~v~~v~~~~---~~~~d---~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G-~~~-~---l~~I~~i~~~  252 (480)
                              .......|...   ....+   ++++++.+.+.   +..+++|+++-.....| .+. |   +++|.++|++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~  237 (429)
T d1s0aa_         161 MHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAH---RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDR  237 (429)
T ss_dssp             TGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHH---TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHH
T ss_pred             cccccCccccccccccccccccccccchhhhhhhhhhhhhc---CCccceeeecceeccCCCccCCCHHHHHHHHHHHHH
Confidence                    11222333221   12233   44454444433   44588888886653444 433 2   8999999999


Q ss_pred             cCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccC
Q psy12303        253 YNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYD  331 (480)
Q Consensus       253 ~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  331 (480)
                      ||+.+|+|+++.|+......+.+ ...++ .+|++++  .|.++++ .+.|++++++ ++.+.........+.+.     
T Consensus       238 ~gillI~DEV~tGfGRtG~~~~~-~~~~v-~PDi~~~--gK~l~gG~~p~~av~~~~-~i~~~~~~~~~~~~~~~-----  307 (429)
T d1s0aa_         238 EGILLIADEIATGFGRTGKLFAC-EHAEI-APDILCL--GKALTGGTMTLSATLTTR-EVAETISNGEAGCFMHG-----  307 (429)
T ss_dssp             HTCEEEEECTTTTTTTTSSSSGG-GGGTC-CCSEEEE--CGGGGTSSSCCEEEEECH-HHHHHHHTSTTSSCSCC-----
T ss_pred             cCcceehhhcccccccccccccc-cccee-ccccccc--ccccccccccccchhhHH-HHHhccCCCCCcceeec-----
Confidence            99999999999998665555544 45566 6899995  4887555 6788887654 34333222111111110     


Q ss_pred             cccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEecCCceeEEEEEeecCc
Q psy12303        332 VRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP---DKFYLILEPEMVNVSFWYLPTR  408 (480)
Q Consensus       332 ~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~---~g~~~~~~~~~~~v~f~~~~~~  408 (480)
                                 .+.....+.+.+++..+..-.-++..++..++.++|.+.|++ +   +.+.=+ .-.+.+..+.+..+.
T Consensus       308 -----------~T~~gnp~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~L~~-l~~~~~v~~v-rg~Gl~~~~e~~~~~  374 (429)
T d1s0aa_         308 -----------PTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAP-ARDAEMVADV-RVLGAIGVVETTHPV  374 (429)
T ss_dssp             -----------CTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGG-GGGCTTEEEE-EEETTEEEEEESSCB
T ss_pred             -----------CCCCCCcccchhhhccccccccccccchhhHHHHHHHHHHHH-hccCCceEEE-eecccEEEEEecCcc
Confidence                       111123444444444332111134567777788888888865 3   233211 111223344433221


Q ss_pred             cCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        409 VRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       409 ~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      .               ...+.+.+.++|.++ .+    . .+.+|++ +....|++|||+++++|++.++|
T Consensus       375 ~---------------~~~~~~~~~~~Gl~~-~~----~-g~~i~~~-Ppl~it~~eid~~~~~l~~al~e  423 (429)
T d1s0aa_         375 N---------------MAALQKFFVEQGVWI-RP----F-GKLIYLM-PPYIILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             C---------------HHHHHHHHHHTTEEC-CC----B-TTEEEEC-CCTTCCHHHHHHHHHHHHHHTSS
T ss_pred             c---------------HHHHHHHHHHCCcEE-Ee----c-CCEEEEe-CCcCCCHHHHHHHHHHHHHHHHh
Confidence            0               245678888888543 22    1 4689999 88999999999999999998875

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.70  E-value=3.8e-15  Score=145.57  Aligned_cols=323  Identities=14%  Similarity=0.072  Sum_probs=183.4

Q ss_pred             HHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCC-
Q psy12303        113 METVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG-  191 (480)
Q Consensus       113 ~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~-  191 (480)
                      ...++.+.|+++..-.-+.+.|+++||+|+..|++.||..       .|.     +..+......|.....++...+.. 
T Consensus        84 ~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~-------t~r-----~~i~~~~~~yHG~t~~~~~~~~~~~  151 (431)
T d1zoda1          84 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLV-------TGK-----YEIVGFAQSWHGMTGAAASATYSAG  151 (431)
T ss_dssp             HHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHH-------HTC-----CEEEEETTCCCCSSHHHHHTCCSSC
T ss_pred             HHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHh-------cCC-----cceeecccccccccchhhccccccc
Confidence            3345677788876433356999999999999999999875       221     324555666677666665544321 


Q ss_pred             -------CCCeEEeeCCCCC---------CCCHHHHHHHHHHHH-HCCCccEEEEeccCCCccccccC----hHHHHHHH
Q psy12303        192 -------TDNCVEVPSDKRG---------RLIPSELERLVLERK-AKGDIPFFVNCTSGTTVLGAFDP----IEEIADIC  250 (480)
Q Consensus       192 -------~~~v~~v~~~~~~---------~~d~~~L~~~i~~~~-~~~~~~~~v~~~~~~~~~G~~~~----l~~I~~i~  250 (480)
                             ......++.....         ..+.++++....... .....+++|+++......|.+.+    +++|.++|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc  231 (431)
T d1zoda1         152 RKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKC  231 (431)
T ss_dssp             CSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHH
T ss_pred             ccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHH
Confidence                   1123333322111         112344444433221 23345899999998888788755    99999999


Q ss_pred             HHcCcEEEeeccccccccccccccCcccCCCCCCccceeCccccCCCcccceEEEEeCchhhHhhhcCCccccccccccc
Q psy12303        251 QKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLY  330 (480)
Q Consensus       251 ~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  330 (480)
                      ++||+++|+|+++.|+......+.+ ...|+ .+|++++  .|.+++++..+.++.++. ........  .+....    
T Consensus       232 ~~~gillI~DEV~tG~gRtG~~~~~-~~~gv-~PDi~~~--gK~l~gG~p~~av~~~~~-~~~~~~~~--~~~~~~----  300 (431)
T d1zoda1         232 EARGMLLILDEAQTGVGRTGTMFAC-QRDGV-TPDILTL--SKTLGAGLPLAAIVTSAA-IEERAHEL--GYLFYT----  300 (431)
T ss_dssp             HHHTCEEEEECTTTTTTTTSSSSTH-HHHTC-CCSEEEE--CHHHHTTSSCEEEEECHH-HHHHHHHT--TCCCCC----
T ss_pred             HhcCceEEecccccccccccccccc-ccCCC-Ccchhcc--ccccccccccceeeeeec-chhhhhcc--cccccC----
Confidence            9999999999999986655444444 44556 7899994  588888888888876543 22222110  011000    


Q ss_pred             CcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHH-HHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEEEeecCcc
Q psy12303        331 DVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQI-DRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRV  409 (480)
Q Consensus       331 ~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~-~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f~~~~~~~  409 (480)
                               ++ .+.+....++.+++..+..+.+.+.. +.-..+.+.+.+.+.+ .+-+.-+ .-.+.++.+.+.....
T Consensus       301 ---------T~-~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~-~~~i~~v-rG~Glm~~ie~~~~~~  368 (431)
T d1zoda1         301 ---------TH-VSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMER-FDCIGDV-RGRGLLLGVEIVKDRR  368 (431)
T ss_dssp             ---------TT-TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH-CTTEEEE-EEETTEEEEEEEEETT
T ss_pred             ---------CC-CCCcchHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhc-CCCeEEE-eecceEEEEEEecCCc
Confidence                     00 11112223334444444333332222 2223344444444555 4433221 1122334444432211


Q ss_pred             CCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        410 RNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       410 ~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                      ....       ...+...+.+.+.+.|... ......+..+.+|++ ++..+|++|||+++++|++.+++
T Consensus       369 ~~~~-------~~~~~~~i~~~~~~~Gl~~-~~~~~~~~~~~i~l~-Ppl~it~~eid~~~~~l~~al~~  429 (431)
T d1zoda1         369 TKEP-------ADGLGAKITRECMNLGLSM-NIVQLPGMGGVFRIA-PPLTVSEDEIDLGLSLLGQAIER  429 (431)
T ss_dssp             TTEE-------CTTHHHHHHHHHHHTTEEC-CEECCTTSCCEEEEC-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCc-------cHHHHHHHHHHHHHhCccc-CeeeecCCCCEEEEE-CCCCCCHHHHHHHHHHHHHHHHH
Confidence            1000       0112356778888888431 111112225789999 99999999999999999988765

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.68  E-value=2.6e-15  Score=146.35  Aligned_cols=346  Identities=9%  Similarity=-0.010  Sum_probs=197.9

Q ss_pred             ccccccCCCChHHhHHHHHHHHcC-c-CCcchhcChhhHHHHHHHHHHHHHHhCC----CCCCeEECCChhHHHHHHHHH
Q psy12303         75 FMNQLSCGLDVVSMAGEWLIATAN-T-NMFTYEIAPVFILMETVVLEKMRQIIGW----QGGDSILAPGGSISNLYAFLA  148 (480)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~~~~~~~e~~~~~~la~~~g~----~~~~~~~t~ggt~a~~~al~~  148 (480)
                      |.+--+.++.++++. ++...... . ..+.|....+..++.+++.+++.+..+.    +...++.|.+++.++..+..+
T Consensus        40 ~~d~~g~~~~~~~V~-~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (412)
T d1ajsa_          40 YRTDDCQPWVLPVVR-KVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEF  118 (412)
T ss_dssp             CCCTTSCCCCCHHHH-HHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHH
T ss_pred             CcCCCCCCCCcHHHH-HHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHH
Confidence            444333334444443 44433322 2 2345777777888888888888665553    222356677888877777766


Q ss_pred             HHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeC--CCCCCCCHHHHHHHHHHHHHCCCccE
Q psy12303        149 ARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPS--DKRGRLIPSELERLVLERKAKGDIPF  226 (480)
Q Consensus       149 ~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~~~~~~  226 (480)
                      +.....       ....||+ .|+++++.++.+...++..|..  .+...+.  +..+..|.+.+++.+...   ..+++
T Consensus       119 l~~~~~-------~~~~pGd-~Vlv~~P~y~~y~~~~~~~G~~--~v~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~  185 (412)
T d1ajsa_         119 LARWYN-------GTNNKDT-PVYVSSPTWENHNGVFTTAGFK--DIRSYRYWDTEKRGLDLQGFLSDLENA---PEFSI  185 (412)
T ss_dssp             HHHHSS-------SSSCCCS-CEEEEESCCTHHHHHHHHTTCS--CEEEEECEETTTTEECHHHHHHHHHHS---CTTCE
T ss_pred             HHHHhh-------hcCCCCC-EEEEeCCcchhhHHHHHHcCCe--EEEeecccccccccccHHHHHHHHHhc---cCCcE
Confidence            543210       0012667 7889999999999999999873  2333333  234567887777766543   23488


Q ss_pred             EEEeccCCCccccccC---hHHHHHHHHHcCcEEEeeccccccccccccccC---cccCCCCCCccceeCccccCCCc-c
Q psy12303        227 FVNCTSGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH---PRLTGIERADSVTWNPHKLMGTL-L  299 (480)
Q Consensus       227 ~v~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~---~~~~~~~~~D~~~~s~hK~~~~p-~  299 (480)
                      ++++++|+||||.+.+   +++|+++|++||++++.|++|............   ..........++..++.|.++.| .
T Consensus       186 ~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~  265 (412)
T d1ajsa_         186 FVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNE  265 (412)
T ss_dssp             EEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGG
T ss_pred             EEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCC
Confidence            9999999999999966   899999999999999999999886553211100   00111112334555666666554 6


Q ss_pred             cceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHH--------hcHHHHHHHHHHH
Q psy12303        300 QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA--------KGDEGFEKQIDRL  371 (480)
Q Consensus       300 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~--------~g~~~~~~~~~~~  371 (480)
                      ++|++++.......... ............           ..+.   ...........        ...+.++.+.++.
T Consensus       266 R~G~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  330 (412)
T d1ajsa_         266 RVGNLTVVAKEPDSILR-VLSQMQKIVRVT-----------WSNP---PAQGARIVARTLSDPELFHEWTGNVKTMADRI  330 (412)
T ss_dssp             CEEEEEEECSSHHHHHH-HHHHHHHHHHTT-----------TSSC---CSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccchhHHHHHHH-HHHHHHHHhhcc-----------cccc---chHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            78988877653211100 000000000000           0001   11111111111        1234456667778


Q ss_pred             HHHHHHHHHHHhcCCCC---eEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCc
Q psy12303        372 MELAEYMVKKIKSMPDK---FYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDL  448 (480)
Q Consensus       372 ~~l~~~l~~~l~~~~~g---~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~  448 (480)
                      .++++.+.+.|++ ...   +..+ .++.+.|+|.    .+               +.+...+|.++..+++.+    | 
T Consensus       331 ~~~r~~l~~~L~~-~~~~~~~~~i-~~~~G~F~~~----~l---------------s~~~v~~L~~e~gV~~vp----g-  384 (412)
T d1ajsa_         331 LSMRSELRARLEA-LKTPGTWNHI-TDQIGMFSFT----GL---------------NPKQVEYLINQKHIYLLP----S-  384 (412)
T ss_dssp             HHHHHHHHHHHHH-TTCSSCCHHH-HHCCSSEEEC----CC---------------CHHHHHHHHHTTCEECCT----T-
T ss_pred             HHHHHHHHHHHHH-hCCCCCeeee-cCCCeEEEec----CC---------------CHHHHHHHHHhCCEEEeC----C-
Confidence            8888889999988 321   2222 3445555551    11               122334554443344433    2 


Q ss_pred             ccEEEEecccCCCCHHHHHHHHHHHHHhhccC
Q psy12303        449 PNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL  480 (480)
Q Consensus       449 ~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~l  480 (480)
                         .|++++.  .++++|++++++|+++++++
T Consensus       385 ---~Ri~~ag--~~~~~i~~~a~aI~~av~~~  411 (412)
T d1ajsa_         385 ---GRINMCG--LTTKNLDYVATSIHEAVTKI  411 (412)
T ss_dssp             ---SEEEGGG--CCTTTHHHHHHHHHHHHHHC
T ss_pred             ---CeEEecc--CCHHHHHHHHHHHHHHHHhc
Confidence               2888543  46788999999999988764

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.67  E-value=8.2e-16  Score=148.89  Aligned_cols=306  Identities=8%  Similarity=-0.023  Sum_probs=177.7

Q ss_pred             HHHHHHHHHHHHHHhC-C--CCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHH
Q psy12303        111 ILMETVVLEKMRQIIG-W--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV  187 (480)
Q Consensus       111 ~~~e~~~~~~la~~~g-~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~  187 (480)
                      .++++++++.- +..| .  +...+++++|+|+++..++.++....      ......||+ .|+++.+.|+.+...+++
T Consensus       103 ~~L~~~i~~lh-~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~------~~~~~~pg~-~Vv~~~P~y~~Y~~~~~~  174 (425)
T d2hoxa1         103 FELEKTIKELH-EVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNM------TATPDAPES-KVVAHAPFYPVFREQTKY  174 (425)
T ss_dssp             HHHHHHHHHHH-HHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCT------TTCTTSCCE-EEEECSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHH-hhhCCCCCCCCEEEECCCHHHHHHHHHHHhcccc------ccccCCCCC-EEEEecCccccHHHHHHH
Confidence            46666655543 3344 2  44459999999999998888875310      011122655 888999999999999999


Q ss_pred             cCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeeccccccc
Q psy12303        188 CGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGL  267 (480)
Q Consensus       188 ~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~~~~  267 (480)
                      ++.   ....++      .|.+.++++++++      ++++++++|+||||.+..       +-.++++++.|++|....
T Consensus       175 ~~~---~~~~~~------~D~~~~~~~~~~~------~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~  232 (425)
T d2hoxa1         175 FDK---KGYVWA------GNAANYVNVSNPE------QYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPH  232 (425)
T ss_dssp             SCB---TTEEEE------EEGGGGTTCSCGG------GEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTT
T ss_pred             cCC---CCCccC------CCHHHHHhhCCCC------ceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCcc
Confidence            876   223333      4666676666655      899999999999998732       223589999999996533


Q ss_pred             cccccccCcccCCCCCCccceeCccccCCCc-ccceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCC
Q psy12303        268 LLSKKYRHPRLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH  346 (480)
Q Consensus       268 ~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~  346 (480)
                      + .+      +.....-+++..+++|.++.| ..+|++++.++.+.+...... .+...                 +...
T Consensus       233 f-~~------~~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~-~~~~~-----------------~vs~  287 (425)
T d2hoxa1         233 Y-TP------IKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYM-TKNTE-----------------GTPR  287 (425)
T ss_dssp             T-SC------CCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHH-HHHTS-----------------SCCH
T ss_pred             c-cc------hhhhcCCeEEEEeCHHhccCcchheeeEEeCCHHHHHHHHHhh-ccCcc-----------------cCCH
Confidence            2 11      111114468888999998854 789999888876654332111 11000                 0000


Q ss_pred             CCchHHHHHHHH----------hcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceeEEEE--EeecCccCCCch
Q psy12303        347 NDIFKLWLQWRA----------KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSF--WYLPTRVRNMPH  414 (480)
Q Consensus       347 ~~~l~~~~~l~~----------~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~~~~~~~v~f--~~~~~~~~~~~~  414 (480)
                      ...+++..+++.          ...+.++...++..+..+++.+.|.+ ...+.+...|......|  ...+.... .  
T Consensus       288 ~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~-~~~~~l~~~p~~~~~~f~~~~~~~~~~-f--  363 (425)
T d2hoxa1         288 ETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQ-SDRFSYQELPQSEYCNYFRRMRPPSPS-Y--  363 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTT-SSSEECCCCCSCEEETTTTEEECCCCS-E--
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCceeeccCCccceeeeeeccCCCcc-e--
Confidence            111122222221          11234555666777778888999988 66665532232221111  11111000 0  


Q ss_pred             hhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHHHHHHHhhcc
Q psy12303        415 EKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD  479 (480)
Q Consensus       415 ~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~~~l~~~~~~  479 (480)
                       .+.+.-.+-.....+.|.+.|+++++...+....+++|+++   ..+++++++++++|++++++
T Consensus       364 -~wl~~~~~~~~~~~~lL~e~gI~v~pGs~FG~~~~yvRisl---~~~~e~ld~~l~rL~~~v~a  424 (425)
T d2hoxa1         364 -AWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSL---IKTQDDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             -EEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEEC---SSCHHHHHHHHHHHHHHHTC
T ss_pred             -eeeeCCCChHHHHHHHHHhCCEEEEechhcCCCCCEEEEEe---cCCHHHHHHHHHHHHHHHhc
Confidence             00000000001234556677755554333322257999994   45789999999999998864

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.67  E-value=2.9e-14  Score=135.14  Aligned_cols=225  Identities=14%  Similarity=0.117  Sum_probs=159.2

Q ss_pred             hcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH
Q psy12303        105 EIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC  184 (480)
Q Consensus       105 ~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~  184 (480)
                      ...|....+|+.    ++++-|...  .+++++|..|+..++.+...              +|+ .|+++...|......
T Consensus        64 ~~nPt~~~LE~~----la~LEgg~~--a~~~sSGMaAi~~~l~~l~~--------------~Gd-~iv~~~~~Yg~t~~l  122 (398)
T d1qgna_          64 YGNPTTVVLEEK----ISALEGAES--TLLMASGMCASTVMLLALVP--------------AGG-HIVTTTDCYRKTRIF  122 (398)
T ss_dssp             GCCHHHHHHHHH----HHHHHTCSE--EEEESCHHHHHHHHHHHHSC--------------SSC-EEEEETTSCHHHHHH
T ss_pred             CCChHHHHHHHH----HHHHhCCce--EEEecCcchHHHHHHhhccc--------------ccc-cccccccccchhhhh
Confidence            356776677766    777777754  88999999999888877643              556 677777777666655


Q ss_pred             HHHc-CCCCCCeEEeeCCCCCCCCHHHHHHHH-HHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecc
Q psy12303        185 AAVC-GLGTDNCVEVPSDKRGRLIPSELERLV-LERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAA  262 (480)
Q Consensus       185 ~~~~-g~~~~~v~~v~~~~~~~~d~~~L~~~i-~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a  262 (480)
                      +... ...+.++.+++..     +.++.++.+ +++      +++|.++.++||+..+.||++|+++|+++|++++||.+
T Consensus       123 ~~~~~~~~gi~~~~~~~~-----~~~~~~~~~~~~~------t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT  191 (398)
T d1qgna_         123 IETILPKMGITATVIDPA-----DVGALELALNQKK------VNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGT  191 (398)
T ss_dssp             HHHTGGGGTCEEEEECSS-----CHHHHHHHHHHSC------EEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred             hccccccccccccccccc-----chhhhhhhhcccc------ceEEEccCccccccccchHHHHHHHHhhcCCEEEecce
Confidence            5443 1111156666532     445444433 333      89999999999999999999999999999999999999


Q ss_pred             ccccccccccccCcccCCCCCCccceeCccccCCCccc-ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccc
Q psy12303        263 WGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ-CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVI  341 (480)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~-~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  341 (480)
                      ++.+...-| ..+       ++|+++.|..|++++.-. .|..++.+.........    +...                
T Consensus       192 ~atP~~~~P-l~~-------GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~----~~~~----------------  243 (398)
T d1qgna_         192 FATPLNQKA-LAL-------GADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRN----LHHI----------------  243 (398)
T ss_dssp             TTCTTTCCT-TTT-------TCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHH----HHHH----------------
T ss_pred             eeccccCCc-hhh-------CCCEEEEechhhcCcccceeehhhcchhhhhhhhhh----hccc----------------
Confidence            987655333 345       899999999999987533 34445566555443221    0000                


Q ss_pred             cCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        342 QCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       342 ~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                       .|.......+|+.++.  .+.+..+++++.+++..+.+.|++ +|.++-+.
T Consensus       244 -~G~~l~p~~a~ll~rg--l~TL~lRm~~~~~nA~~lA~~L~~-hp~V~~V~  291 (398)
T d1qgna_         244 -LGGALNPNAAYLIIRG--MKTLHLRVQQQNSTALRMAEILEA-HPKVRHVY  291 (398)
T ss_dssp             -HCCCCCHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHHHHT-CTTEEEEE
T ss_pred             -CCCcCCHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHh-CCCeeecC
Confidence             1222456678877765  577888999999999999999999 89987443

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.65  E-value=4.9e-14  Score=133.91  Aligned_cols=223  Identities=12%  Similarity=0.078  Sum_probs=162.6

Q ss_pred             hcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH
Q psy12303        105 EIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC  184 (480)
Q Consensus       105 ~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~  184 (480)
                      ...|....+|+.    ++++-|.+.  .+.+++|..|+..++.+...              +|+ .|+++...|......
T Consensus        56 ~~nPT~~~le~~----la~LEg~~~--a~~~sSGmaAi~~~~l~l~~--------------~gd-~vv~~~~~yg~t~~~  114 (394)
T d1e5ea_          56 LGNPTVSNLEGK----IAFLEKTEA--CVATSSGMGAIAATVLTILK--------------AGD-HLISDECLYGCTHAL  114 (394)
T ss_dssp             TCCHHHHHHHHH----HHHHHTCSE--EEEESSHHHHHHHHHHHHCC--------------TTC-EEEEESCCCHHHHHH
T ss_pred             CCCHHHHHHHHH----HHHHhCCcc--eeeeccchHHHHHHHHhhcc--------------ccc-ccccccceeehhhHh
Confidence            356776777766    778877764  78889999998888776643              556 777877777665544


Q ss_pred             H----HHcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHH-cCcEEEe
Q psy12303        185 A----AVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQK-YNMWLHV  259 (480)
Q Consensus       185 ~----~~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~-~~~~l~v  259 (480)
                      +    ...|+   ++.+++.+     |+++++++++++      +++|.++.++||+..+.|++++.+++++ +|+.++|
T Consensus       115 ~~~~~~~~gi---~~~~~d~~-----d~~~~~~~i~~~------t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvv  180 (394)
T d1e5ea_         115 FEHALTKFGI---QVDFINTA-----IPGEVKKHMKPN------TKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIA  180 (394)
T ss_dssp             HHTHHHHTTC---EEEEECTT-----STTHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEE
T ss_pred             HHHHhhccce---eeeccCCC-----CHHHHHHhhccc------ccEEEEeccCCcceeeehhhhhhhccccccCeEEEe
Confidence            4    33455   77787765     778899999877      9999999999999999999999987764 6899999


Q ss_pred             eccccccccccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCC
Q psy12303        260 DAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       260 D~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  337 (480)
                      |.+++.+...- ...+       ++|+++.|..|++++-..  .|+++.+ .+.........  +. .            
T Consensus       181 DnT~atP~~~~-Pl~~-------GaDiVvhS~TKy~~GhsDv~~G~v~~~-~~~~~~~~~~~--~~-~------------  236 (394)
T d1e5ea_         181 DNTFCSPMITN-PVDF-------GVDVVVHSATKYINGHTDVVAGLICGK-ADLLQQIRMVG--IK-D------------  236 (394)
T ss_dssp             ECTTTCTTTCC-GGGG-------TCSEEEEETTTTTTCSSCCCCEEEEEC-HHHHHHHHHTC--CC-C------------
T ss_pred             cCcccCcccCC-chhc-------CCCEEEechhhhcCCCcccccccccch-hhHHHHHHHHH--HH-H------------
Confidence            99998776533 3355       899999999999986532  4655554 43332221100  00 0            


Q ss_pred             CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        338 DKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       338 ~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                          ..|.......+|..++.  .+.+..+++++.+++..+.+.|++ +|.++-+.
T Consensus       237 ----~~G~~lsp~~a~ll~rg--l~TL~lRm~r~~~nA~~lA~~L~~-hp~V~~V~  285 (394)
T d1e5ea_         237 ----ITGSVISPHDAWLITRG--LSTLNIRMKAESENAMKVAEYLKS-HPAVEKVY  285 (394)
T ss_dssp             ----CCCCCCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHT-CTTEEEEE
T ss_pred             ----hhCCCCChHHHHHHHhh--chhHHHHHHHHHHHHHHHHHHHhh-cCCccEEe
Confidence                02222456778877765  678889999999999999999999 89986543

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=5.7e-16  Score=150.30  Aligned_cols=329  Identities=11%  Similarity=-0.038  Sum_probs=191.8

Q ss_pred             CChHHhHHHHHHHHc-CcCCcchhcChhhHHHHHHHHHHHHHHhCC--CCC--CeEECCChhHHHHHHHHHHHHhcCchh
Q psy12303         83 LDVVSMAGEWLIATA-NTNMFTYEIAPVFILMETVVLEKMRQIIGW--QGG--DSILAPGGSISNLYAFLAARHKMFPTY  157 (480)
Q Consensus        83 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~--~~~~t~ggt~a~~~al~~~~~~~~~~~  157 (480)
                      +.++++. +...... +...+.|....+..++.+.+.+++.+..+.  ++.  ..+.+.+++.+...++......     
T Consensus        44 p~~~~V~-~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----  117 (396)
T d2q7wa1          44 PVLTSVK-KAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKN-----  117 (396)
T ss_dssp             CCCHHHH-HHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH-----
T ss_pred             CCCHHHH-HHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhc-----
Confidence            3445544 3333332 333446777788888888888888776554  222  2345666665555554433221     


Q ss_pred             HhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEEEeccCCC
Q psy12303        158 KEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFVNCTSGTT  235 (480)
Q Consensus       158 ~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~  235 (480)
                             .+|+ .|+++++.++.+...+...|.   +++.+|...  ++..+...+++....   ...+++++++++|+|
T Consensus       118 -------~~gd-~Vlvp~P~y~~y~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~P~N  183 (396)
T d2q7wa1         118 -------TSVK-RVWVSNPSWPNHKSVFNSAGL---EVREYAYYDAENHTLDFDALINSLNE---AQAGDVVLFHGCCHN  183 (396)
T ss_dssp             -------SCCC-EEEEEESCCTHHHHHHHHTTC---EEEEEECEETTTTEECHHHHHHHHTT---CCTTCEEEEECSSCT
T ss_pred             -------ccce-EEEEecCCCccchHHHHHcCC---eeEecccccccccccccchHHHHHHH---hccCcEEEEecCCcC
Confidence                   1546 888999999999999999998   788888753  345566666665543   234488999999999


Q ss_pred             ccccccC---hHHHHHHHHHcCcEEEeeccccccccccccccCc--ccCCCCCCccceeCccccCCCc-ccceEEEEeCc
Q psy12303        236 VLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHP--RLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQD  309 (480)
Q Consensus       236 ~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~  309 (480)
                      |||.+.+   +++|.++|++|+++++.|++|.......+....+  .......-..+..++.|.++.| ..+|++.+...
T Consensus       184 PTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~  263 (396)
T d2q7wa1         184 PTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAA  263 (396)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECS
T ss_pred             CcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccCCCccccccchh
Confidence            9999866   6789999999999999999998876532211110  0111112234555666766554 67999988765


Q ss_pred             hhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--------cHHHHHHHHHHHHHHHHHHHHH
Q psy12303        310 GLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--------GDEGFEKQIDRLMELAEYMVKK  381 (480)
Q Consensus       310 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--------g~~~~~~~~~~~~~l~~~l~~~  381 (480)
                      ....... ............           ..+   ......++....+        ..+.++++.++..++++.+.+.
T Consensus       264 ~~~~~~~-~~~~~~~~~~~~-----------~~~---~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~  328 (396)
T d2q7wa1         264 DSETVDR-AFSQMKAAIRAN-----------YSN---PPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNT  328 (396)
T ss_dssp             SHHHHHH-HHHHHHHHHHTT-----------TSS---CCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHH
T ss_pred             HHHHHHH-hhhhhhhhhhcc-----------ccC---CCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3211100 000000000000           000   0111222221111        2455677778888889999999


Q ss_pred             HhcCC-CC--eEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEeccc
Q psy12303        382 IKSMP-DK--FYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISS  458 (480)
Q Consensus       382 l~~~~-~g--~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~  458 (480)
                      |++ + +.  +..+ +++.+.++|.    .+               +.+..++|.++..+++.+    +  +  |++++.
T Consensus       329 L~~-~~~~~~~~~~-~~~~G~F~~~----~l---------------~~e~~~~L~~e~gV~~~~----g--~--Ri~~a~  379 (396)
T d2q7wa1         329 LQE-KGANRDFSFI-IKQNGMFSFS----GL---------------TKEQVLRLREEFGVYAVA----S--G--RVNVAG  379 (396)
T ss_dssp             HHH-TTCCSCCTHH-HHCCSSEEEC----CC---------------CHHHHHHHHHHHCEECCT----T--C--EEEGGG
T ss_pred             HHH-hCCCCCccee-cCCCeEEEee----CC---------------CHHHHHHHHHhCCEEECC----C--C--EEEecC
Confidence            988 3 11  2222 3445666652    11               123445555543343332    2  2  888543


Q ss_pred             CCCCHHHHHHHHHHHHHhh
Q psy12303        459 AAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       459 ~~~t~~di~~~~~~l~~~~  477 (480)
                        .++++|++++++|.+++
T Consensus       380 --l~~~~i~~~~~ai~~v~  396 (396)
T d2q7wa1         380 --MTPDNMAPLCEAIVAVL  396 (396)
T ss_dssp             --CCTTTHHHHHHHHHHHC
T ss_pred             --CCHHHHHHHHHHHHHhC
Confidence              46788999999998763

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=2.8e-14  Score=135.47  Aligned_cols=225  Identities=11%  Similarity=0.094  Sum_probs=164.9

Q ss_pred             hcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH
Q psy12303        105 EIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC  184 (480)
Q Consensus       105 ~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~  184 (480)
                      ...|....+|+.    ++++-|...  ++.+++|..|+..++.+...              +|+ .|+++...|......
T Consensus        55 ~~nPt~~~le~~----la~LEg~~~--a~~~~SGMaAi~~~l~~l~~--------------~Gd-~iv~~~~~Yg~T~~l  113 (391)
T d1cl1a_          55 RGTLTHFSLQQA----MCELEGGAG--CVLFPCGAAAVANSILAFIE--------------QGD-HVLMTNTAYEPSQDF  113 (391)
T ss_dssp             TCCHHHHHHHHH----HHHHHTCSE--EEEESSHHHHHHHHHHHHCC--------------TTC-EEEEETTSCHHHHHH
T ss_pred             CCChhHHHHHHH----HHHHhCCcc--EEEeccccceeeehhhcccC--------------CCC-eEEEecccccchhhh
Confidence            355776677766    777877754  88999999999988877753              556 788888888887776


Q ss_pred             HHHc-CCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHc--CcEEEeec
Q psy12303        185 AAVC-GLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY--NMWLHVDA  261 (480)
Q Consensus       185 ~~~~-g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~--~~~l~vD~  261 (480)
                      ++.. ...+.++.++...     |.++++++++++      +++|.+..++||+..+.|+++|+++|+++  |+.++||.
T Consensus       114 ~~~~l~~~Gi~~~~~d~~-----d~~~~~~~i~~~------t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDn  182 (391)
T d1cl1a_         114 CSKILSKLGVTTSWFDPL-----IGADIVKHLQPN------TKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDN  182 (391)
T ss_dssp             HHHTGGGGTCEEEEECTT-----CGGGGGGTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEEC
T ss_pred             hhhcccccccccccccCc-----cccccccccccc------cceeeecccCcccccccccHHHHHHHHhccCCcEEEEec
Confidence            6543 2212266666544     778888888776      99999999999999999999999999875  99999999


Q ss_pred             cccccccccccccCcccCCCCCCccceeCccccCCCccc-ceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcc
Q psy12303        262 AWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ-CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKV  340 (480)
Q Consensus       262 a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~-~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  340 (480)
                      +++.+...-| ..+       ++|+++.|..|++++--. .|.+++.+...........  ..                 
T Consensus       183 T~atP~~~~P-l~~-------GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~--~~-----------------  235 (391)
T d1cl1a_         183 TWAAGVLFKA-LDF-------GIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA--YL-----------------  235 (391)
T ss_dssp             TTTTTTSSCG-GGG-------TCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH--HH-----------------
T ss_pred             cccchhhhcc-ccc-------ccceEEeecchhccccccccccceeccccccccchhhh--hc-----------------
Confidence            9988765333 345       899999999999997532 3444445554433221100  00                 


Q ss_pred             ccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        341 IQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       341 ~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                        .|....+..+|+.++.  .+.+..+++++.+++..+.+.|++ +|.+.-+.
T Consensus       236 --~G~~~~p~~a~ll~rg--l~TL~lR~~~~~~nA~~vA~~L~~-hp~V~~V~  283 (391)
T d1cl1a_         236 --MGQMVDADTAYITSRG--LRTLGVRLRQHHESSLKVAEWLAE-HPQVARVN  283 (391)
T ss_dssp             --TTCCCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHT-CTTEEEEE
T ss_pred             --ccccCCchhhhhhhcc--chhHHHHHHHHHHHHHHHHHHHHh-cccccccc
Confidence              1112355677777664  677889999999999999999999 89987654

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.65  E-value=2.7e-15  Score=141.81  Aligned_cols=222  Identities=14%  Similarity=0.084  Sum_probs=162.0

Q ss_pred             cChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHHH
Q psy12303        106 IAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCA  185 (480)
Q Consensus       106 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~  185 (480)
                      ..|....+|+.    ++.+-|.+.  ++.+++|..|+. ++..+..              +|+ .|+++...|......+
T Consensus        47 ~nPt~~~le~~----la~LE~~~~--a~~fsSGMaAis-all~ll~--------------~Gd-~vv~~~~~Yg~t~~l~  104 (380)
T d1ibja_          47 GNPTRDALESL----LAKLDKADR--AFCFTSGMAALS-AVTHLIK--------------NGE-EIVAGDDVYGGSDRLL  104 (380)
T ss_dssp             CCHHHHHHHHH----HHHHHTCSE--EEEESSHHHHHH-HHHTTSC--------------TTC-EEEEESSCCHHHHHHH
T ss_pred             CChHHHHHHHH----HHHHcCCce--EEehhhHHHHHH-HHHHhhC--------------CCC-EEEEEecccccccchh
Confidence            45666666665    788877754  788888887764 5443321              556 7788888888887777


Q ss_pred             HHcCC-CCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEeecccc
Q psy12303        186 AVCGL-GTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWG  264 (480)
Q Consensus       186 ~~~g~-~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD~a~~  264 (480)
                      +..-. .+.++.++..+     ++++++++++++      |++|.++.++||+..+.||++|+++|+++|++++||.+++
T Consensus       105 ~~~~~~~gi~~~~~d~~-----~~~~~~~ai~~~------t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~a  173 (380)
T d1ibja_         105 SQVVPRSGVVVKRVNTT-----KLDEVAAAIGPQ------TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIM  173 (380)
T ss_dssp             HHTSGGGTCEEEEECTT-----SHHHHHHHCCSS------EEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTT
T ss_pred             hhhhccccccccccCcc-----hHHHHHHHhccC------ccEEEeccccccccccccHHHHHHHHHHcCCeEEeecccc
Confidence            65421 11266666544     788898888665      9999999999999999999999999999999999999998


Q ss_pred             ccccccccccCcccCCCCCCccceeCccccCCCcc--cceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCcccc
Q psy12303        265 GGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL--QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQ  342 (480)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~--~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  342 (480)
                      .+...-|. .+       ++|+++.|..|++++-.  -.|+++.++..+........ . .                   
T Consensus       174 tP~~~~Pl-~~-------GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~-~-~-------------------  224 (380)
T d1ibja_         174 SPVLSRPL-EL-------GADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQ-N-S-------------------  224 (380)
T ss_dssp             CTTTCCGG-GT-------TCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHH-H-H-------------------
T ss_pred             cccccccc-cc-------CCCEEEecccceeccccCccccccccchhhHHHHHHhhc-c-c-------------------
Confidence            86654433 45       89999999999998653  24666666554433221100 0 0                   


Q ss_pred             CCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        343 CGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       343 ~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      .|.......+|+.++.  .+.+..+++++.+++..+.+.|++ +|.++-+
T Consensus       225 ~G~~l~p~~a~ll~rg--l~Tl~lRm~~~~~nA~~lA~~L~~-hp~V~~V  271 (380)
T d1ibja_         225 EGSGLAPFDCWLCLRG--IKTMALRIEKQQENARKIAMYLSS-HPRVKKV  271 (380)
T ss_dssp             TTCBCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHT-CTTCCEE
T ss_pred             cCCcCCHHHHHHHHhc--chhhhhhHHHHHHHHHHHHHHHHh-CCCeeEE
Confidence            1222456678877765  678899999999999999999999 8887644

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=6.6e-16  Score=149.88  Aligned_cols=332  Identities=9%  Similarity=-0.052  Sum_probs=191.3

Q ss_pred             ChHHhHHHHHHHHcC--cCCcchhcChhhHHHHHHHHHHHHHHhCC--CCCCeEECCChhHHHHHHHHHHHHhcCchhHh
Q psy12303         84 DVVSMAGEWLIATAN--TNMFTYEIAPVFILMETVVLEKMRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKE  159 (480)
Q Consensus        84 ~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~  159 (480)
                      .++++. ++.....+  .....|....+..++.+++++++.+..+.  +++.++.+.+++.+...++..+....    . 
T Consensus        45 ~~~~V~-~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~----~-  118 (397)
T d3tata_          45 QLQAVA-EAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKR----Y-  118 (397)
T ss_dssp             CCHHHH-HHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHH----H-
T ss_pred             CcHHHH-HHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhh----c-
Confidence            334433 55444332  23345777777788888877777655553  34567776666655444443332211    0 


Q ss_pred             cCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCCC--CCCCHHHHHHHHHHHHHCCCccEEEEeccCCCcc
Q psy12303        160 KGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKR--GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVL  237 (480)
Q Consensus       160 ~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~~--~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~  237 (480)
                           .||+ .|++++++++.+...++.+|.   +++.+|++.+  +..|.+++.+.+...   ..+++++++++++|||
T Consensus       119 -----~pgd-~Vlv~~P~y~~y~~~~~~~G~---~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~NPT  186 (397)
T d3tata_         119 -----FPES-GVWVSDPTWENHVAIFAGAGF---EVSTYPWYDEATNGVRFNDLLATLKTL---PARSIVLLHPCCHNPT  186 (397)
T ss_dssp             -----CSSC-CCEECSSCCTTHHHHHHTTTC---CCEECCCCCTTTSSCCHHHHHHHHTTC---CSSCCCEECSSSCSSS
T ss_pred             -----CCCC-cceecccCccccHHHHHHcCC---EEEEEecchhhccccchHHHHHHhhhc---ccccEEEEecCCCCCC
Confidence                 1556 799999999999999999998   8899998653  567877777665532   3457899999999999


Q ss_pred             ccccC---hHHHHHHHHHcCcEEEeeccccccccccccccCc--ccCCCCCCccceeCccccCCCc-ccceEEEEeCchh
Q psy12303        238 GAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHP--RLTGIERADSVTWNPHKLMGTL-LQCSTIHFKQDGL  311 (480)
Q Consensus       238 G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~~D~~~~s~hK~~~~p-~~~g~~~~~~~~~  311 (480)
                      |.+.+   +++|.++|++|+++++.|++|.......+....+  .......--+++.++.|.++.| ..+|++.......
T Consensus       187 G~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~  266 (397)
T d3tata_         187 GADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDA  266 (397)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCCBCCEEECSST
T ss_pred             CeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCccccccccchhHH
Confidence            99965   7889999999999999999999876532111100  0111111124566788877654 6789988766532


Q ss_pred             hH--hhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHH--Hh---cHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12303        312 LI--SCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWR--AK---GDEGFEKQIDRLMELAEYMVKKIKS  384 (480)
Q Consensus       312 ~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~--~~---g~~~~~~~~~~~~~l~~~l~~~l~~  384 (480)
                      ..  .......... ..             +..+.-......+...+.  .+   ..+.++.+.++..++++.+.+.|.+
T Consensus       267 ~~~~~~~~~~~~~~-~~-------------~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~  332 (397)
T d3tata_         267 EAAGRVLGQLKATV-RR-------------NYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLST  332 (397)
T ss_dssp             THHHHHHHHHHHHT-TT-------------TTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHh-hc-------------ccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11  1000000000 00             000010011111111111  10   1233445556666677777777766


Q ss_pred             CCCC--eEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCC
Q psy12303        385 MPDK--FYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVT  462 (480)
Q Consensus       385 ~~~g--~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t  462 (480)
                      +.++  +..+ +++.+.+++.    .+               +.+..++|.++..+++.+    |    .|++++.  .+
T Consensus       333 ~~~~~~~~~~-~~~~G~F~~~----~l---------------s~e~~~~L~~e~~V~l~~----g----~Ri~~a~--~~  382 (397)
T d3tata_         333 EMPERNFDYL-LNQRGMFSYT----GL---------------SAAQVDRLREEFGVYLIA----S----GRMCVAG--LN  382 (397)
T ss_dssp             TCTTSCTTHH-HHCCSSBCCC----CC---------------CHHHHHHHTTTTCEECCS----S----SCCBTTS--CC
T ss_pred             hCCCCceEEE-cCCCceEEec----Cc---------------CHHHHHHHHHhCCEEeCC----C----CEEEecc--CC
Confidence            2222  2222 3455555441    11               134456676665454443    2    2888543  57


Q ss_pred             HHHHHHHHHHHHHhh
Q psy12303        463 EGDIDFLLTEMDRLG  477 (480)
Q Consensus       463 ~~di~~~~~~l~~~~  477 (480)
                      +++|++++++|.+++
T Consensus       383 ~~~i~~~~~ai~~v~  397 (397)
T d3tata_         383 TANVQRVAKAFAAVM  397 (397)
T ss_dssp             TTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhC
Confidence            899999999998763

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.63  E-value=2.6e-14  Score=132.94  Aligned_cols=213  Identities=12%  Similarity=0.130  Sum_probs=156.2

Q ss_pred             HHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH----HHHcCCCCC
Q psy12303        118 LEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC----AAVCGLGTD  193 (480)
Q Consensus       118 ~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~----~~~~g~~~~  193 (480)
                      .+.++.+-|...  ++.+++|..|+..++.+..+              ||+ +|+++..-|......    +..+|+   
T Consensus         4 E~~la~Leg~~~--a~~~sSGMaAi~~~l~~ll~--------------~Gd-~iv~~~~~Yg~t~~~~~~~l~~~gi---   63 (331)
T d1pffa_           4 EGKIAKLEHAEA--CAATASGMGAIAASVWTFLK--------------AGD-HLISDDCLYGCTHALFEHQLRKFGV---   63 (331)
T ss_dssp             HHHHHHHHTCSE--EEEESSHHHHHHHHHHHHCC--------------TTC-EEEEESCCCHHHHHHHHTHHHHTTC---
T ss_pred             HHHHHHHhCCCe--EEEECCHHHHHHHHHHHHhC--------------CCC-EEEEeCCCchHHHHHHHHHHHhcCe---
Confidence            445888878754  78889999999888877654              667 677777666554444    344566   


Q ss_pred             CeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHH-HHcCcEEEeecccccccccccc
Q psy12303        194 NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADIC-QKYNMWLHVDAAWGGGLLLSKK  272 (480)
Q Consensus       194 ~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~-~~~~~~l~vD~a~~~~~~~~~~  272 (480)
                      ++.+++..     |++.++++++++      +++|.+..++||+..+.|++++.+++ +++|+.++||.+++.+...-| 
T Consensus        64 ~~~~~d~~-----d~~~~~~~i~~~------t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~p-  131 (331)
T d1pffa_          64 EVDFIDMA-----VPGNIEKHLKPN------TRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNP-  131 (331)
T ss_dssp             EEEEECTT-----STTHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCG-
T ss_pred             EEEEeccc-----chhhHhhhcccc------cceeeeecccccccccccchhhhhhhhcccCceEEeeccccccccccc-
Confidence            78887765     788899988776      99999999999999999999999985 678999999999987765443 


Q ss_pred             ccCcccCCCCCCccceeCccccCCCcc--cceEEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCch
Q psy12303        273 YRHPRLTGIERADSVTWNPHKLMGTLL--QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIF  350 (480)
Q Consensus       273 ~~~~~~~~~~~~D~~~~s~hK~~~~p~--~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l  350 (480)
                      ..+       ++|+++.|..|++++-.  -.|+++.++. ............+                   .|......
T Consensus       132 l~~-------GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~-~~~~~~~~~~~~~-------------------~G~~l~p~  184 (331)
T d1pffa_         132 LDL-------GVDIVVHSATKYINGHTDVVAGLVCSRAD-IIAKVKSQGIKDI-------------------TGAIISPH  184 (331)
T ss_dssp             GGG-------TCSEEEEETTTTTSSSSSCCCEEEEECHH-HHHHHHHTCCCCC-------------------CCCCCCHH
T ss_pred             ccc-------CCCEEEecchhhcCCCCcccccccccccc-chhhhhhhhhhhc-------------------cCCCCCHH
Confidence            355       89999999999998642  2455554433 3222111100000                   12224566


Q ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        351 KLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       351 ~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      .+|..++  |.+.+..+.+++.+++..+.+.|++ +|.++-+
T Consensus       185 ~a~ll~r--gl~Tl~~Rm~~~~~nA~~lA~~L~~-hp~V~~V  223 (331)
T d1pffa_         185 DAWLITR--GTLTLDMRVKRAAENAQKVAEFLHE-HKAVKKV  223 (331)
T ss_dssp             HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-CTTCCCE
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhh-CCcEEee
Confidence            7888776  4788999999999999999999999 8887543

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.62  E-value=9.7e-15  Score=142.12  Aligned_cols=312  Identities=10%  Similarity=0.025  Sum_probs=184.9

Q ss_pred             cchhcChhhHHHHHHHHHHHHHHhCCC-CCCeEEC---CChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCC
Q psy12303        102 FTYEIAPVFILMETVVLEKMRQIIGWQ-GGDSILA---PGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQC  177 (480)
Q Consensus       102 ~~~~~~~~~~~~e~~~~~~la~~~g~~-~~~~~~t---~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~  177 (480)
                      +.|....+..++.+++.+++.+..+.. ..+.+.+   .+++.+...++......            .||+ .|+++++.
T Consensus        67 ~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~gd-~Vlip~P~  133 (412)
T d1yaaa_          67 HEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKF------------FPDK-LVYLSKPT  133 (412)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH------------CTTC-CEEEEESC
T ss_pred             CCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhcc------------CCCC-EEeccccc
Confidence            457777788888888888776655531 1222333   33333333333222211            1556 78888899


Q ss_pred             chhHHHHHHHcCCCCCCeEEeeCC--CCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccC---hHHHHHHHHH
Q psy12303        178 HYSVRSCAAVCGLGTDNCVEVPSD--KRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP---IEEIADICQK  252 (480)
Q Consensus       178 h~s~~~~~~~~g~~~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~---l~~I~~i~~~  252 (480)
                      ++.+...+...|.   +++.+|..  .++..+.+.+++.+...   ...++++++++++||||.+.+   +++|.++|++
T Consensus       134 ~~~y~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~  207 (412)
T d1yaaa_         134 WANHMAIFENQGL---KTATYPYWANETKSLDLNGFLNAIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIAS  207 (412)
T ss_dssp             CTTHHHHHHTTTC---CEEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHcCC---ceecccccccccccccchhhhcccccC---CCceEEEEecCCCCCccccCCHHHHHHHHhhhcc
Confidence            9999999999998   88888874  34677888888777653   334789999999999999965   8899999999


Q ss_pred             cCcEEEeeccccccccccccccC----c--ccCCCCCCccceeCccccCCC-cccceEEEEeCchhhH--hhh---cCCc
Q psy12303        253 YNMWLHVDAAWGGGLLLSKKYRH----P--RLTGIERADSVTWNPHKLMGT-LLQCSTIHFKQDGLLI--SCN---QMSA  320 (480)
Q Consensus       253 ~~~~l~vD~a~~~~~~~~~~~~~----~--~~~~~~~~D~~~~s~hK~~~~-p~~~g~~~~~~~~~~~--~~~---~~~~  320 (480)
                      ++++++.|++|............    +  .......--+++.|+.|.++. +..+|++++.......  ...   ....
T Consensus       208 ~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~  287 (412)
T d1yaaa_         208 KNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQL  287 (412)
T ss_dssp             TTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHH
T ss_pred             CCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHH
Confidence            99999999999877653211000    0  001111223567788998775 4789999987652110  000   0000


Q ss_pred             ccccccccccCcccCCCCccccCCCCCCchHHHHHHHHh--------cHHHHHHHHHHHHHHHHHHHHHHhcCCC--C-e
Q psy12303        321 EYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK--------GDEGFEKQIDRLMELAEYMVKKIKSMPD--K-F  389 (480)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~--------g~~~~~~~~~~~~~l~~~l~~~l~~~~~--g-~  389 (480)
                      .......             ..+   ...+........+        ..+.++.+.+++.+.++.+.+.|++ ..  + +
T Consensus       288 ~~~~~~~-------------~~~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~g~~~~~  350 (412)
T d1yaaa_         288 AKIIRSE-------------VSN---PPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVK-LGTPGNW  350 (412)
T ss_dssp             HHHHHTT-------------TSS---CCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCSSCC
T ss_pred             HHHHHHH-------------hcC---CChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCC
Confidence            0000000             000   1111222222111        1344566777778888888888887 31  1 2


Q ss_pred             EEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHH
Q psy12303        390 YLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFL  469 (480)
Q Consensus       390 ~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~  469 (480)
                      .. .+|+.++++|.    .+               ..+..++|.++..+++.+    |    .|++++.  .+++.|+++
T Consensus       351 ~~-~~~~gG~F~~~----~l---------------s~e~~~~L~~e~~V~~~~----g----~Ris~~g--~~~~~i~~l  400 (412)
T d1yaaa_         351 DH-IVNQCGMFSFT----GL---------------TPQMVKRLEETHAVYLVA----S----GRASIAG--LNQGNVEYV  400 (412)
T ss_dssp             TH-HHHCCSSEEEC----CC---------------CHHHHHHHHHHHCEECCT----T----SEEEGGG--CCTTTHHHH
T ss_pred             ce-eCCCceEEEec----Cc---------------CHHHHHHHHHhCCEEECC----C----CEEEecc--CCHHHHHHH
Confidence            22 24667776652    11               122344554443344332    2    3888543  467789999


Q ss_pred             HHHHHHhhcc
Q psy12303        470 LTEMDRLGHD  479 (480)
Q Consensus       470 ~~~l~~~~~~  479 (480)
                      +++|.++++.
T Consensus       401 ~~ai~~v~k~  410 (412)
T d1yaaa_         401 AKAIDEVVRF  410 (412)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.62  E-value=8.7e-15  Score=141.77  Aligned_cols=342  Identities=13%  Similarity=-0.021  Sum_probs=195.8

Q ss_pred             CCccccccCCCChHHhHHHHHHHHcC-cCCcchhcChhhHHHHHHHHHHHHHHhCCC-CCCeEECCChhHHHHHHHHHHH
Q psy12303         73 PMFMNQLSCGLDVVSMAGEWLIATAN-TNMFTYEIAPVFILMETVVLEKMRQIIGWQ-GGDSILAPGGSISNLYAFLAAR  150 (480)
Q Consensus        73 p~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~e~~~~~~la~~~g~~-~~~~~~t~ggt~a~~~al~~~~  150 (480)
                      ..|.+--+.++.++++. +......+ ...+.|....+..++.+++.+++.+.-+.. ....+.+.||+.+...++....
T Consensus        34 G~~~d~~g~~~~~~~V~-~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  112 (394)
T d2ay1a_          34 GVYKDATGHTPIMRAVH-AAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELAR  112 (394)
T ss_dssp             CSCCCTTSCCCCCHHHH-HHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHH
T ss_pred             CCccCCCCCCCCCHHHH-HHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhh
Confidence            33444333344445443 44444433 233467777788888888888876655442 2345666677666555544332


Q ss_pred             HhcCchhHhcCCCccCCceEEEecCCCchhHHHHHHHcCCCCCCeEEeeCCC--CCCCCHHHHHHHHHHHHHCCCccEEE
Q psy12303        151 HKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFV  228 (480)
Q Consensus       151 ~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~v  228 (480)
                      ..            .||+ .|+++.+.++.+...++.+|.   +++.+|...  .+..+.+++++.....   ..+++++
T Consensus       113 ~~------------~~gd-~V~~p~p~~~~y~~~~~~~g~---~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~  173 (394)
T d2ay1a_         113 MA------------NPDL-RVFVSDPTWPNHVSIMNFMGL---PVQTYRYFDAETRGVDFEGMKADLAAA---KKGDMVL  173 (394)
T ss_dssp             HH------------CTTC-CEEEEESCCHHHHHHHHHHTC---CEEEEECEETTTTEECHHHHHHHHHTC---CTTCEEE
T ss_pred             hc------------CCce-EEEEecccccchHHHHHHcCC---EEEEecccchhcccccchhHHHHHhhc---ccCcEEE
Confidence            21            1545 788999999999999999998   788888743  3556666666655432   2347889


Q ss_pred             EeccCCCccccccC---hHHHHHHHHHcCcEEEeeccccccccccccccCc-ccCCCCC-CccceeCccccCCC-cccce
Q psy12303        229 NCTSGTTVLGAFDP---IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHP-RLTGIER-ADSVTWNPHKLMGT-LLQCS  302 (480)
Q Consensus       229 ~~~~~~~~~G~~~~---l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~-~D~~~~s~hK~~~~-p~~~g  302 (480)
                      ++++++||||.+.+   +++|+++|++|+++++.|++|............+ ....... --.+..++.|.++. +..+|
T Consensus       174 ~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G  253 (394)
T d2ay1a_         174 LHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTG  253 (394)
T ss_dssp             EESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEE
T ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCccccc
Confidence            99999999999966   7889999999999999999998876532211100 0000001 12334455565554 46788


Q ss_pred             EEEEeCchhhHhhhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHH-----HHHhcHHHHHHHHHHHHHHHHH
Q psy12303        303 TIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQ-----WRAKGDEGFEKQIDRLMELAEY  377 (480)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~-----l~~~g~~~~~~~~~~~~~l~~~  377 (480)
                      ++.+.......... ............           ..+.....+..+...     +.....+.++.+.++..++++.
T Consensus       254 ~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~  321 (394)
T d2ay1a_         254 CLLALCADAATREL-AQGAMAFLNRQT-----------YSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQ  321 (394)
T ss_dssp             EEEEECSSHHHHHH-HHHHHHHHHHTT-----------TSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhchhHHHHHHH-hhhhhHhhhccc-----------ccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88877653221110 000000000000           000000111111111     1111234556667777788888


Q ss_pred             HHHHHhcCCCC---eEEecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEE
Q psy12303        378 MVKKIKSMPDK---FYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRN  454 (480)
Q Consensus       378 l~~~l~~~~~g---~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~  454 (480)
                      |.+.|++ ..+   +.. ..|+.++++|.-.                   +.+..++|.++..+++.+    |    .|+
T Consensus       322 l~~~L~~-~~~~~~~~~-~~~~~G~F~~~~l-------------------s~~~~~~L~~~~~V~~~~----g----~Ri  372 (394)
T d2ay1a_         322 LAGELRD-LSGSDRFGF-VAEHRGMFSRLGA-------------------TPEQVKRIKEEFGIYMVG----D----SRI  372 (394)
T ss_dssp             HHHHHHH-HHTSSTTTH-HHHCCSSEEECCC-------------------CHHHHHHHHHHHCEECCT----T----CEE
T ss_pred             HHHHHHH-hCCCCceee-ECCCceeEEecCc-------------------CHHHHHHHHHhCCEEecC----C----CEE
Confidence            8888877 321   222 2466777776311                   123445665544344443    2    388


Q ss_pred             ecccCCCCHHHHHHHHHHHHHhh
Q psy12303        455 IISSAAVTEGDIDFLLTEMDRLG  477 (480)
Q Consensus       455 ~~~~~~~t~~di~~~~~~l~~~~  477 (480)
                      ++..  .++++|++++++|.++.
T Consensus       373 ~~a~--l~~~~i~~l~~ai~~v~  393 (394)
T d2ay1a_         373 NIAG--LNDNTIPILARAIIEVG  393 (394)
T ss_dssp             EGGG--CCTTTHHHHHHHHHHHT
T ss_pred             EecC--CCHHHHHHHHHHHHHhC
Confidence            8643  57799999999998864

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.61  E-value=1.6e-14  Score=141.94  Aligned_cols=313  Identities=16%  Similarity=0.090  Sum_probs=179.1

Q ss_pred             HHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhH--------------hcCCCccCCceEEEecCCCchhH
Q psy12303        116 VVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYK--------------EKGLSAIKGQLVMFTSDQCHYSV  181 (480)
Q Consensus       116 ~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~--------------~~g~~~~~g~~~vl~~~~~h~s~  181 (480)
                      ++.+.+.++.+-+-..++|+++||+|+..|++.+|.....+.+              .......+...+|-.....|...
T Consensus       104 ~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t  183 (461)
T d1ohwa_         104 KLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRT  183 (461)
T ss_dssp             HHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSS
T ss_pred             HHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCC
Confidence            3444454544444467999999999999999999864210000              00000112122444556678777


Q ss_pred             HHHHHHcCCCC--------CCeEEeeCCC-CC-------------CCCHHHHHHHHHHHHHCCCccEEEEeccCCCcccc
Q psy12303        182 RSCAAVCGLGT--------DNCVEVPSDK-RG-------------RLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGA  239 (480)
Q Consensus       182 ~~~~~~~g~~~--------~~v~~v~~~~-~~-------------~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~  239 (480)
                      ..+....|-..        ..-...|... .+             ..+.+++++.+.........+++|+++..+...|.
T Consensus       184 ~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~  263 (461)
T d1ohwa_         184 MGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGD  263 (461)
T ss_dssp             HHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTC
T ss_pred             cccccccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccc
Confidence            77666654310        0001111110 00             11345677777666666677899999999888887


Q ss_pred             ccC----hHHHHHHHHHcCcEEEeeccccccccccccccCcccCCCC-CCccceeCccccCCCcccceEEEEeCchhhHh
Q psy12303        240 FDP----IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIE-RADSVTWNPHKLMGTLLQCSTIHFKQDGLLIS  314 (480)
Q Consensus       240 ~~~----l~~I~~i~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~-~~D~~~~s~hK~~~~p~~~g~~~~~~~~~~~~  314 (480)
                      +.+    +++|.++|++||+++|+|+++.|+......+.+ ...+++ .+|+++++  |.+++    |.+....  .+. 
T Consensus       264 ~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~-e~~gi~~~PDiv~~g--K~l~~----g~~~~~~--~~~-  333 (461)
T d1ohwa_         264 NHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAH-EHWGLDDPADVMTFS--KKMMT----GGFFHKE--EFR-  333 (461)
T ss_dssp             BCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGG-GGGCCSSCCSEEEEC--GGGSS----EEEEECG--GGS-
T ss_pred             cCchhhHHHHHHHHHHhhCcceeccccccccccccccccc-cccccccCchhhhhh--hcccc----ccccccc--ccc-
Confidence            754    899999999999999999999988765544444 444553 47999854  87654    3333321  111 


Q ss_pred             hhcCCcccccccccccCcccCCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCC-eE
Q psy12303        315 CNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSM---PDK-FY  390 (480)
Q Consensus       315 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~---~~g-~~  390 (480)
                         ....+...           +++   .+.+....++.++|+.+..+   +.+++..++.++|.+.|++.   .|. +.
T Consensus       334 ---~~~~~~~~-----------~T~---~g~p~~~aaa~a~l~~i~~~---~l~~~~~~~g~~l~~~l~~l~~~~~~~i~  393 (461)
T d1ohwa_         334 ---PNAPYRIF-----------NTW---LGDPSKNLLLAEVINIIKRE---DLLSNAAHAGKVLLTGLLDLQARYPQFIS  393 (461)
T ss_dssp             ---CSSTTSSC-----------CSC---SSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTTCE
T ss_pred             ---cccccccc-----------ccc---ccccccchhhcccchhhhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCceE
Confidence               11111100           000   11112233334444444333   34455666666666665540   333 21


Q ss_pred             EecCCceeEEEEEeecCccCCCchhhHHHHhhhhhHHHHHHHHhcccEEEeeeeeCCcccEEEEecccCCCCHHHHHHHH
Q psy12303        391 LILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLL  470 (480)
Q Consensus       391 ~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~R~~~~~~~~t~~di~~~~  470 (480)
                      -+ .-.+.++.+.+...               ....++.+.+.++|.++...    + .+.+|+. +....|++||+.++
T Consensus       394 ~v-rG~Gl~~~ie~~~~---------------~~~~~i~~~~~~~Gll~~~~----~-~~~ir~~-PpL~it~~eid~~~  451 (461)
T d1ohwa_         394 RV-RGRGTFCSFDTPDE---------------SIRNKLISIARNKGVMLGGC----G-DKSIRFR-PTLVFRDHHAHLFL  451 (461)
T ss_dssp             EE-EEETTEEEEECSSH---------------HHHHHHHHHHHHTTEECEEE----T-TTEEECC-CCTTCCHHHHHHHH
T ss_pred             Ee-eeeeEEEEEEcCCH---------------HHHHHHHHHHHHCCeEEeeC----C-CCEEEEe-CCcCCCHHHHHHHH
Confidence            11 01122333432110               12356788899999544332    2 4789998 99999999999999


Q ss_pred             HHHHHhhccC
Q psy12303        471 TEMDRLGHDL  480 (480)
Q Consensus       471 ~~l~~~~~~l  480 (480)
                      +.|+++++|+
T Consensus       452 ~~l~~~l~ef  461 (461)
T d1ohwa_         452 NIFSDILADF  461 (461)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhcC
Confidence            9999998874

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.58  E-value=9.8e-14  Score=132.29  Aligned_cols=241  Identities=14%  Similarity=0.099  Sum_probs=160.3

Q ss_pred             hcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH
Q psy12303        105 EIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC  184 (480)
Q Consensus       105 ~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~  184 (480)
                      ...|....+|+.    ++.+-|...  ++.+++|-.|+..++.+...              +|+ +|+++...|......
T Consensus        55 ~~nPT~~~LE~~----la~LE~~~~--a~~~~SGmaAi~~~~~~l~~--------------~gd-~il~~~~~Yg~t~~l  113 (421)
T d2ctza1          55 IMNPTVDVLEKR----LAALEGGKA--ALATASGHAAQFLALTTLAQ--------------AGD-NIVSTPNLYGGTFNQ  113 (421)
T ss_dssp             TBCHHHHHHHHH----HHHHHTCSE--EEEESSHHHHHHHHHHHHCC--------------TTC-EEEECSCCCHHHHHH
T ss_pred             CCCHHHHHHHHH----HHHHhCCCe--EEEecChHHHHHHHHHhhcc--------------ccc-ceeecCCcCCchhHH
Confidence            356776677766    777777654  78889998888888776654              556 788888787766665


Q ss_pred             HH----HcCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHHHcCcEEEee
Q psy12303        185 AA----VCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVD  260 (480)
Q Consensus       185 ~~----~~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~~~~~~l~vD  260 (480)
                      +.    ..|+   ++.++..+    -..+..++.++++      |++|.++.|+||+..+.||++|+++|+++|+.++||
T Consensus       114 ~~~~~~~~gi---~~~~~d~~----~~~~~~~~~~~~~------t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvD  180 (421)
T d2ctza1         114 FKVTLKRLGI---EVRFTSRE----ERPEEFLALTDEK------TRAWWVESIGNPALNIPDLEALAQAAREKGVALIVD  180 (421)
T ss_dssp             HHTHHHHTTC---EEEECCTT----CCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHhhccc---cceecccc----cCcchhccccCCC------ceEEEEcCCCcceeEecchHHHHHHHHhcCCceEec
Confidence            54    3455   66666432    1345555656655      999999999999999999999999999999999999


Q ss_pred             ccccccccccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhh-----hcCCcccccccccccCcc
Q psy12303        261 AAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISC-----NQMSAEYLFMQDKLYDVR  333 (480)
Q Consensus       261 ~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~  333 (480)
                      .+++...+.+....+       ++|+++.|..|++++--.  .|+++.++.......     ....+.+-  .. .....
T Consensus       181 nT~a~tP~~~~Pl~~-------GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~--~~-~~~~~  250 (421)
T d2ctza1         181 NTFGMGGYLLRPLAW-------GAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYH--GL-RLTEA  250 (421)
T ss_dssp             CGGGGGGTSCCGGGG-------TCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGT--TB-CHHHH
T ss_pred             ccccccceecccccc-------CCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhh--hh-HHHHH
Confidence            999843333444455       899999999999987432  466655443221110     00000000  00 00000


Q ss_pred             cCCC--------CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy12303        334 YDTG--------DKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLI  392 (480)
Q Consensus       334 ~~~~--------~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~  392 (480)
                      +...        ...-..|.......+|+.++.  .+.+..+++++.+++..+.+.|++ +|.++-+
T Consensus       251 ~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rg--l~TL~lRm~~~~~nA~~vA~~L~~-hp~V~~V  314 (421)
T d2ctza1         251 FGELAFIVKARVDGLRDQGQALGPFEAWVVLLG--METLSLRAERHVENTLHLAHWLLE-QPQVAWV  314 (421)
T ss_dssp             HGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHT-CTTEEEE
T ss_pred             hccHHHHHHHHHHHHHhccCCCCHHHHHHHhcC--CcchhhHHHHHHHHHHHHHhhhcc-CCCeeEE
Confidence            0000        000002333466778877765  677889999999999999999999 8998544

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=2.2e-13  Score=129.17  Aligned_cols=224  Identities=13%  Similarity=0.103  Sum_probs=152.7

Q ss_pred             hcChhhHHHHHHHHHHHHHHhCCCCCCeEECCChhHHHHHHHHHHHHhcCchhHhcCCCccCCceEEEecCCCchhHHHH
Q psy12303        105 EIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSC  184 (480)
Q Consensus       105 ~~~~~~~~~e~~~~~~la~~~g~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~g~~~~~g~~~vl~~~~~h~s~~~~  184 (480)
                      ...|....+|+.    ++.+-|...  ++.+++|..|+.. +..+..              +|+ .|+++...+......
T Consensus        52 ~gnPT~~~lE~~----la~LE~~~~--a~~~sSGmaAi~~-~l~~l~--------------~gd-~iv~~~~~yg~t~~~  109 (393)
T d1n8pa_          52 SQNPNRENLERA----VAALENAQY--GLAFSSGSATTAT-ILQSLP--------------QGS-HAVSIGDVYGGTHRY  109 (393)
T ss_dssp             TCCHHHHHHHHH----HHHHTTCSE--EEEESCHHHHHHH-HHHTSC--------------SSC-EEEEESSCCHHHHHH
T ss_pred             CCChHHHHHHHH----HHHHhCCce--EEEecCchhHHHh-hhhccc--------------CCC-eeeeeeeecccchhh
Confidence            355766667666    777777654  6778888666643 333322              446 555666666665555


Q ss_pred             HHH-cCCCCCCeEEeeCCCCCCCCHHHHHHHHHHHHHCCCccEEEEeccCCCccccccChHHHHHHHH----HcCcEEEe
Q psy12303        185 AAV-CGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQ----KYNMWLHV  259 (480)
Q Consensus       185 ~~~-~g~~~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~~~~G~~~~l~~I~~i~~----~~~~~l~v  259 (480)
                      +.. +.....++.+++.      +.++++++++++      +++|.+..++||+..+.|+++|+++|+    ++|+.++|
T Consensus       110 ~~~~l~~~gi~~~~~~~------~~~~~~~~i~~~------t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvV  177 (393)
T d1n8pa_         110 FTKVANAHGVETSFTND------LLNDLPQLIKEN------TKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVV  177 (393)
T ss_dssp             HHHTSTTTCSCCEEESS------HHHHHHHHSCSS------EEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEE
T ss_pred             hhhhhhcccceeEEeec------chHHHHHHhhhh------cceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEE
Confidence            544 3322336666542      467788888766      999999999999999999999999999    67899999


Q ss_pred             eccccccccccccccCcccCCCCCCccceeCccccCCCccc--ceEEEEeCchhhHhhhcCCcccccccccccCcccCCC
Q psy12303        260 DAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQ--CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTG  337 (480)
Q Consensus       260 D~a~~~~~~~~~~~~~~~~~~~~~~D~~~~s~hK~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  337 (480)
                      |.+++.+...-| ..+       ++|+++.|.-|++++--.  .|+++.++..+........ ..               
T Consensus       178 DnT~atP~~~~P-l~~-------GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~-~~---------------  233 (393)
T d1n8pa_         178 DNTFLSPYISNP-LNF-------GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQ-NA---------------  233 (393)
T ss_dssp             ECTTTHHHHCCG-GGG-------TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHH-HH---------------
T ss_pred             ecCccCcccCCc-hhh-------CCCEEEEccccccCCCCccccceeeecchhHHHHHHHHH-hh---------------
Confidence            999988765433 345       899999999999987532  4555555554433221100 00               


Q ss_pred             CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEec
Q psy12303        338 DKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL  393 (480)
Q Consensus       338 ~~~~~~~r~~~~l~~~~~l~~~g~~~~~~~~~~~~~l~~~l~~~l~~~~~g~~~~~  393 (480)
                           .|.......+|+.++.  .+.+..+++++.+++..+.+.|+++.+.++-+.
T Consensus       234 -----~G~~~~p~~a~ll~rg--l~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~  282 (393)
T d1n8pa_         234 -----IGAIPSPFDAWLTHRG--LKTLHLRVRQAALSANKIAEFLAADKENVVAVN  282 (393)
T ss_dssp             -----HCCCCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEE
T ss_pred             -----cCCCCChHHHHHHHhC--CcchhhHHHHHHHHHHHHHHHHHhccCcEEEEe
Confidence                 1112345677877765  677889999999999999999987226666543