Psyllid ID: psy12307

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MGHSSDMYLECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLLENELCWGLSIYKALDKSTGLRSILNWSDLVNLGLRIKWQGLESIRV
Secondary Structure (PSIPRED)
ccccccEEEEcccccccccEEEcccccccccEEEEccccccccccccccccccccccEEEEHHHHHHHHHHHHHHcccccHHHccHHHHHccccEEEEccccEEcc
Secondary Structure Prediction (SSPRO)
cccccEEEEEcccccccccEEccccccccccEEEEcccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHcHHHHHHcccEEEEccccEEEc
Coil and Loop (DISEMBL)
mghssdmylecppaedgmerfacptpdhmgryrciddhvlcdgfidcptgededrQNFLLENELCWGLSIYKAldkstglrsilNWSDLVNLGLRIKWqglesirv
Flexible Loop (DISEMBL)
MGHSSDMYLECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLLENELCWGLSIYKALDKSTGLRSILNwsdlvnlglrikwqglesirv
Low Complexity Region (SEG)
MGHSSDMYLECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLLENELCWGLSIYKALDKSTGLRSILNWSDLVNLGLRIKWQGLESIRV
Disordered region (IsUnstruct)
********************FACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLLENELCWGLSIYKALDKSTGLRSILNWSDLVNLGLRIKWQGL*****
Disordered Region (DISOPRED)
****SDM**ECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLLENELCWGLSIYKALDKSTGLRSILNWSDLVNLGLRIKWQGLESIR*
Disordered Region (DISEMBL)
MGHSSDMYLECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLLENELCWGLSIYKALDKSTGLRSILNWSDLVNLGLRIKWQGLESIRV
Disordered Region (DISPRO)
***SSDMYLECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLLENELCWGLSIYKALDKSTGLRSILNWSDLVNLGLRIKWQGLESIR*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGHSSDMYLECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLLENELCWGLSIYKALDKSTGLRSILNWSDLVNLGLRIKWQGLESIRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
195381647	575	GJ21660 [Drosophila virilis] gi|19414435	0.490	0.090	0.788	4e-20
195123609	586	GI18644 [Drosophila mojavensis] gi|19391	0.490	0.088	0.788	5e-20
198458132	567	GA15598 [Drosophila pseudoobscura pseudo	0.490	0.091	0.769	5e-20
194753335	538	GF12645 [Drosophila ananassae] gi|190620	0.462	0.091	0.816	5e-20
195153835	570	GL17386 [Drosophila persimilis] gi|19411	0.490	0.091	0.769	5e-20
195333600	551	GM20388 [Drosophila sechellia] gi|194125	0.490	0.094	0.769	6e-20
19922068	560	jelly belly, isoform A [Drosophila melan	0.490	0.092	0.769	7e-20
194883806	559	GG22609 [Drosophila erecta] gi|190659175	0.490	0.093	0.769	7e-20
195485537	559	GE13477 [Drosophila yakuba] gi|194177232	0.490	0.093	0.769	7e-20
357628610	186	hypothetical protein KGM_18694 [Danaus p	0.490	0.279	0.826	1e-19

>gi|195381647|ref|XP_002049559.1| GJ21660 [Drosophila virilis] gi|194144356|gb|EDW60752.1| GJ21660 [Drosophila virilis]

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/52 (78%), Positives = 45/52 (86%)

Query: 9   LECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLL 60
           +ECP A DGMERFACPTPD  GRYRCIDDHVLCDGFIDCP GEDEDR++ + 
Sbjct: 502 IECPTAMDGMERFACPTPDLQGRYRCIDDHVLCDGFIDCPEGEDEDRRSCMF 553

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195123609|ref|XP_002006296.1| GI18644 [Drosophila mojavensis] gi|193911364|gb|EDW10231.1| GI18644 [Drosophila mojavensis]

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/52 (78%), Positives = 45/52 (86%)

Query: 9   LECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLL 60
           +ECP A DGMERFACPTPD  GRYRCIDDHVLCDGFIDCP GEDEDR++ + 
Sbjct: 513 IECPTAMDGMERFACPTPDLQGRYRCIDDHVLCDGFIDCPEGEDEDRRSCMF 564

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198458132|ref|XP_001360926.2| GA15598 [Drosophila pseudoobscura pseudoobscura] gi|198136233|gb|EAL25501.2| GA15598 [Drosophila pseudoobscura pseudoobscura]

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/52 (76%), Positives = 44/52 (84%)

Query: 9   LECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLL 60
           +ECP A DGMERFACP PD  GRYRCIDDHVLCDGFIDCP GEDEDR++ + 
Sbjct: 499 IECPTAMDGMERFACPVPDRQGRYRCIDDHVLCDGFIDCPDGEDEDRRSCMF 550

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194753335|ref|XP_001958969.1| GF12645 [Drosophila ananassae] gi|190620267|gb|EDV35791.1| GF12645 [Drosophila ananassae]

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/49 (81%), Positives = 43/49 (87%)

Query: 9   LECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQN 57
           +ECP A DGMERFACP PD  GRYRCIDDHVLCDGFIDCP GEDEDR++
Sbjct: 465 IECPTAMDGMERFACPIPDRQGRYRCIDDHVLCDGFIDCPDGEDEDRRS 513

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195153835|ref|XP_002017829.1| GL17386 [Drosophila persimilis] gi|194113625|gb|EDW35668.1| GL17386 [Drosophila persimilis]

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/52 (76%), Positives = 44/52 (84%)

Query: 9   LECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLL 60
           +ECP A DGMERFACP PD  GRYRCIDDHVLCDGFIDCP GEDEDR++ + 
Sbjct: 497 IECPTAMDGMERFACPVPDRQGRYRCIDDHVLCDGFIDCPDGEDEDRRSCMF 548

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195333600|ref|XP_002033478.1| GM20388 [Drosophila sechellia] gi|194125448|gb|EDW47491.1| GM20388 [Drosophila sechellia]

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/52 (76%), Positives = 44/52 (84%)

Query: 9   LECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLL 60
           +ECP A DGMERFACP PD  GRYRCIDDHVLCDGFIDCP GEDEDR++ + 
Sbjct: 487 IECPTAMDGMERFACPIPDRQGRYRCIDDHVLCDGFIDCPDGEDEDRRSCMF 538

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19922068|ref|NP_610726.1| jelly belly, isoform A [Drosophila melanogaster] gi|442623410|ref|NP_001260910.1| jelly belly, isoform B [Drosophila melanogaster] gi|16903560|gb|AAL30510.1|AF425733_1 Jelly Belly precursor [Drosophila melanogaster] gi|16903562|gb|AAL30511.1|AF425734_1 Jelly Belly precursor [Drosophila melanogaster] gi|16648168|gb|AAL25349.1| GH16255p [Drosophila melanogaster] gi|21645470|gb|AAF58582.2| jelly belly, isoform A [Drosophila melanogaster] gi|220960124|gb|ACL92598.1| jeb-PA [synthetic construct] gi|440214316|gb|AGB93443.1| jelly belly, isoform B [Drosophila melanogaster]

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/52 (76%), Positives = 44/52 (84%)

Query: 9   LECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLL 60
           +ECP A DGMERFACP PD  GRYRCIDDHVLCDGFIDCP GEDEDR++ + 
Sbjct: 487 IECPTAMDGMERFACPIPDRQGRYRCIDDHVLCDGFIDCPDGEDEDRRSCMF 538

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194883806|ref|XP_001975988.1| GG22609 [Drosophila erecta] gi|190659175|gb|EDV56388.1| GG22609 [Drosophila erecta]

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/52 (76%), Positives = 44/52 (84%)

Query: 9   LECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLL 60
           +ECP A DGMERFACP PD  GRYRCIDDHVLCDGFIDCP GEDEDR++ + 
Sbjct: 486 IECPTAMDGMERFACPIPDRQGRYRCIDDHVLCDGFIDCPDGEDEDRRSCMF 537

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195485537|ref|XP_002091131.1| GE13477 [Drosophila yakuba] gi|194177232|gb|EDW90843.1| GE13477 [Drosophila yakuba]

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/52 (76%), Positives = 44/52 (84%)

Query: 9   LECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLL 60
           +ECP A DGMERFACP PD  GRYRCIDDHVLCDGFIDCP GEDEDR++ + 
Sbjct: 486 IECPTAMDGMERFACPIPDRQGRYRCIDDHVLCDGFIDCPDGEDEDRRSCMF 537

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357628610|gb|EHJ77882.1| hypothetical protein KGM_18694 [Danaus plexippus]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/52 (82%), Positives = 45/52 (86%)

Query: 9   LECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLL 60
           +ECPPA DGMERFACPTPD  GRYRCIDDHVLCDGFIDCP GEDEDRQ  + 
Sbjct: 113 IECPPAADGMERFACPTPDRQGRYRCIDDHVLCDGFIDCPNGEDEDRQACMF 164

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
FB|FBgn0086677	560	jeb "jelly belly" [Drosophila	0.462	0.087	0.816	1.9e-19
FB|FBgn0051092	1064	LpR2 "Lipophorin receptor 2" [	0.273	0.027	0.482	0.00053

FB|FBgn0086677 jeb "jelly belly" [Drosophila melanogaster (taxid:7227)]

 Score = 240 (89.5 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 40/49 (81%), Positives = 43/49 (87%)

Query:     9 LECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQN 57
             +ECP A DGMERFACP PD  GRYRCIDDHVLCDGFIDCP GEDEDR++
Sbjct:   487 IECPTAMDGMERFACPIPDRQGRYRCIDDHVLCDGFIDCPDGEDEDRRS 535

GO:0007522 "visceral muscle development" evidence=IMP

GO:0007509 "mesoderm migration involved in gastrulation" evidence=NAS;TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0007435 "salivary gland morphogenesis" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0042051 "compound eye photoreceptor development" evidence=IMP

FB|FBgn0051092 LpR2 "Lipophorin receptor 2" [Drosophila melanogaster (taxid:7227)]

 Score = 78 (32.5 bits), Expect = 0.00053, Sum P(2) = 0.00053
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query:    31 RYRCIDDHVLCDGFIDCPTGEDEDRQNFL 59
             R  C+    +CDG  DCP GEDE + N L
Sbjct:   410 RITCLHKSWVCDGEADCPDGEDESQSNCL 438

GO:0005041 "low-density lipoprotein receptor activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	106
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	0.004

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 32.2 bits (74), Expect = 0.004
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 33 RCIDDHVLCDGFIDCPTGEDED 54
          RCI    +CDG  DC  G DE+
Sbjct: 12 RCIPSSWVCDGEDDCGDGSDEE 33

Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	98.54
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	98.53
smart00192	33	LDLa Low-density lipoprotein receptor domain class	98.32
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	97.84
PF15494	98	SRCR_2: Scavenger receptor cysteine-rich domain	96.31
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	92.11
KOG2397|consensus	480		91.12
KOG1215|consensus	877		89.93
KOG1215|consensus	877		81.55

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=98.54  E-value=3.4e-08  Score=58.36  Aligned_cols=31  Identities=45%  Similarity=1.046  Sum_probs=27.3

Q ss_pred             CceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCc
Q psy12307         18 MERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDED   54 (106)
Q Consensus        18 ~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~   54 (106)
                      ..+|.|..    +.  ||...++|||+.||++||||.
T Consensus         5 ~~~f~C~~----~~--CI~~~~~CDg~~DC~dgsDE~   35 (37)
T PF00057_consen    5 PGEFRCGN----GQ--CIPKSWVCDGIPDCPDGSDEQ   35 (37)
T ss_dssp             TTEEEETT----SS--EEEGGGTTSSSCSSSSSTTTS
T ss_pred             CCeeEcCC----CC--EEChHHcCCCCCCCCCCcccc
Confidence            46899992    33  999999999999999999995

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=98.53  E-value=3.8e-08  Score=57.10  Aligned_cols=31  Identities=42%  Similarity=0.889  Sum_probs=27.6

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcC
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDR   55 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~   55 (106)
                      .+|.|.     . ..||+..++|||+.||++||||..
T Consensus         4 ~~f~C~-----~-~~Ci~~~~~CDg~~DC~dgsDE~~   34 (35)
T cd00112           4 NEFRCA-----N-GRCIPSSWVCDGEDDCGDGSDEEN   34 (35)
T ss_pred             CeEEcC-----C-CCeeCHHHcCCCccCCCCCccccc
Confidence            688998     3 569999999999999999999963

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=98.32  E-value=4.4e-07  Score=51.81  Aligned_cols=28  Identities=43%  Similarity=0.907  Sum_probs=25.4

Q ss_pred             eecCCCCCCCCceeecCCCcccCCCCCCCCCCCC
Q psy12307         20 RFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDE   53 (106)
Q Consensus        20 e~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE   53 (106)
                      +|.|.     +.. ||+..++|||+.||++||||
T Consensus         6 ~f~C~-----~~~-Ci~~~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        6 EFQCD-----NGR-CIPLSWVCDGVDDCSDGSDE   33 (33)
T ss_pred             eEECC-----CCC-EECchhhCCCcCcCcCCCCC
Confidence            89998     333 99999999999999999998

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=97.84  E-value=1.8e-05  Score=61.02  Aligned_cols=40  Identities=30%  Similarity=0.508  Sum_probs=32.1

Q ss_pred             CCCceeecCCC-------cccCCCCCCCCCCCCcC---C-cceEEecCCCc
Q psy12307         28 HMGRYRCIDDH-------VLCDGFIDCPTGEDEDR---Q-NFLLENELCWG   67 (106)
Q Consensus        28 ~~gR~~CI~~~-------~LCDG~~DCpdGeDE~~---c-sC~Fyc~~~~p   67 (106)
                      .+|.|.|.+..       ++.|++=||||||||.-   | .-+|||.|+.-
T Consensus        34 ~~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPGTsAC~~~~FyC~N~g~   84 (176)
T PF12999_consen   34 ENGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPGTSACSNGKFYCENKGH   84 (176)
T ss_pred             CCCceEecCCCCceecHHHccCcceeCCCCCCccccccCcCceEeeccCCC
Confidence            44678885554       89999999999999974   5 45999999963

>PF15494 SRCR_2: Scavenger receptor cysteine-rich domain

Probab=96.31  E-value=0.002  Score=43.43  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=21.7

Q ss_pred             CCceeeeeccccccce-EEecCcchhc
Q psy12307         65 CWGLSIYKALDKSTGL-RSILNWSDLV   90 (106)
Q Consensus        65 ~~pLsVy~~l~~s~~l-~~~~nw~~~~   90 (106)
                      +.-|+||++-+ ++|+ ||++||++..
T Consensus         3 ~s~LQV~~~~~-~~W~~VC~d~W~~~~   28 (98)
T PF15494_consen    3 NSLLQVYSAAS-GSWLPVCSDNWNEAL   28 (98)
T ss_pred             CcEEEEEecCC-CCEeeecccccCHHH
Confidence            35689999987 8899 9999999875

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=92.11  E-value=0.17  Score=39.30  Aligned_cols=45  Identities=33%  Similarity=0.754  Sum_probs=32.7

Q ss_pred             cccCCCCCCCCCce---ecCCCCCCCCceeecCC---------CcccCCCCC---CCCCCCCcCCcc
Q psy12307          7 MYLECPPAEDGMER---FACPTPDHMGRYRCIDD---------HVLCDGFID---CPTGEDEDRQNF   58 (106)
Q Consensus         7 ~~~~C~~~~~G~de---~~Cptpd~~gR~~CI~~---------~~LCDG~~D---CpdGeDE~~csC   58 (106)
                      -+=+||.   |-||   .+|+    +++|||.+.         +.+=||+=|   |=|||||....|
T Consensus        56 dyCDC~D---GSDEPGTsAC~----~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE~~~~C  115 (176)
T PF12999_consen   56 DYCDCPD---GSDEPGTSACS----NGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDESGGKC  115 (176)
T ss_pred             cceeCCC---CCCccccccCc----CceEeeccCCCCCceeehhhhcCCcCcccccCCCCCCCCCCC
Confidence            4557864   5555   4898    579999554         378899999   999999944333

>KOG2397|consensus

Probab=91.12  E-value=0.25  Score=43.62  Aligned_cols=48  Identities=23%  Similarity=0.266  Sum_probs=34.5

Q ss_pred             CCCCCceeecCCC------cccCCCCCCCCCCCCcC-Ccce---EEecCCCceeeeec
Q psy12307         26 PDHMGRYRCIDDH------VLCDGFIDCPTGEDEDR-QNFL---LENELCWGLSIYKA   73 (106)
Q Consensus        26 pd~~gR~~CI~~~------~LCDG~~DCpdGeDE~~-csC~---Fyc~~~~pLsVy~~   73 (106)
                      |+..+.|.|.+.+      ++=|++-||++|+||-- -+|-   |||++....++|-.
T Consensus        39 y~as~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPGtsACpngkF~C~N~G~~p~~i~   96 (480)
T KOG2397|consen   39 YDASSMFKCLDGSKTISFSQLNDDSCDCLDGSDEPGTSACPNGKFYCVNQGHQPKYIP   96 (480)
T ss_pred             cccccceeeccCCcccCHHHhccccccCCCCCCCCccccCCCCceeeeecCCCceeee
Confidence            3445567775444      89999999999999933 2666   99998865555543

>KOG1215|consensus

Probab=89.93  E-value=0.17  Score=45.00  Aligned_cols=34  Identities=47%  Similarity=1.007  Sum_probs=27.4

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ   56 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c   56 (106)
                      .+++|+.    ++..||...++|||..+|++|+||..+
T Consensus       141 ~~~~c~~----~~~~Cip~~~~cd~~~~C~dg~de~~~  174 (877)
T KOG1215|consen  141 DKFSCRT----GSCKCIPGDWLCDGEADCPDGSDELNC  174 (877)
T ss_pred             CCCCCcC----ccccCCCCceeCCCCCccccchhhhcc
Confidence            4455551    367899999999999999999999754

>KOG1215|consensus

Probab=81.55  E-value=0.93  Score=40.45  Aligned_cols=30  Identities=47%  Similarity=0.754  Sum_probs=23.7

Q ss_pred             eecCCCcccCCCCCCCCCCCCcCCcceEEe
Q psy12307         33 RCIDDHVLCDGFIDCPTGEDEDRQNFLLEN   62 (106)
Q Consensus        33 ~CI~~~~LCDG~~DCpdGeDE~~csC~Fyc   62 (106)
                      -|+....+|||..|||+|+||+.+.-.+|+
T Consensus       271 ~~~~~~~~~~g~~d~pdg~de~~~~~~~~~  300 (877)
T KOG1215|consen  271 DCSDRQKLCDGDLDCPDGLDEDYCKKKLYW  300 (877)
T ss_pred             CCccceEEecCccCCCCcccccccccceee
Confidence            366777889999999999999977544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	106
2xrc_A	565	Human complement factor I; immune system, hydrolas	6e-04

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 36.4 bits (84), Expect = 6e-04
 Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 8/69 (11%)

Query: 6   DMYLECPPAEDGMERFACPTPD--HMGRYRCIDDHVLCDGFIDCPTGEDEDR------QN 57
             Y +        ++   P  D       + I     CDG  DC    DE        + 
Sbjct: 186 MGYQDFADVVCYTQKADSPMDDFFQCVNGKYISQMKACDGINDCGDQSDELCCKACQGKG 245

Query: 58  FLLENELCW 66
           F  ++ +C 
Sbjct: 246 FHCKSGVCI 254

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	98.57
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	98.52
1cr8_A	42	Protein (LOW density lipoprotein receptor related	98.48
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	98.44
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	98.42
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	98.41
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	98.4
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	98.4
3a7q_B	44	Low-density lipoprotein receptor-related protein;	98.35
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	98.34
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	98.33
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	98.22
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	98.22
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	98.16
2m0p_A	52	Low-density lipoprotein receptor-related protein;	98.15
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	98.03
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	97.84
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	97.82
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	97.7
2xrc_A	565	Human complement factor I; immune system, hydrolas	97.59
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	97.08
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.07
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.97
2xrc_A	565	Human complement factor I; immune system, hydrolas	96.95
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.65
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	96.56
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.38
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	96.36
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	95.28

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=98.57  E-value=3.4e-08  Score=58.48  Aligned_cols=40  Identities=28%  Similarity=0.636  Sum_probs=32.1

Q ss_pred             cccCCCCCCCCCceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307          7 MYLECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ   56 (106)
Q Consensus         7 ~~~~C~~~~~G~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c   56 (106)
                      ....|++     .+|.|.     ..-.||+.+.+|||+.||++||||..|
T Consensus         3 ~~~~C~~-----~~f~C~-----~~g~CI~~~~~CDg~~DC~DgSDE~~C   42 (43)
T 2jm4_A            3 QDVKCSL-----GYFPCG-----NITKCLPQLLHCNGVDDCGNQADEDNC   42 (43)
T ss_dssp             CSCSCCT-----TEEECS-----SSSCEEEGGGTTSSCCCSSSCCTTSSC
T ss_pred             cCCCCCC-----CeeECC-----CCCeEcCHhhccCCCCCCCCCcccCCC
Confidence            3456754     589998     324599999999999999999999754

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=98.52  E-value=3.4e-08  Score=59.19  Aligned_cols=37  Identities=35%  Similarity=0.675  Sum_probs=28.9

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ   56 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c   56 (106)
                      .+|.|.... ...-.||+..++|||+.||++||||..|
T Consensus        10 ~~F~C~~~~-~~~g~CIp~~~~CDG~~DC~DgSDE~~C   46 (47)
T 1k7b_A           10 GQFRCSEPP-GAHGECYPQDWLCDGHPDCDDGRDEWGC   46 (47)
T ss_dssp             TEECCSSCT-TSCCCCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred             CceEcCCCC-CCCCcCCCccccCCCcCCCCCCcccCCC
Confidence            589998320 1144699999999999999999999743

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=98.48  E-value=6e-08  Score=57.14  Aligned_cols=34  Identities=32%  Similarity=0.529  Sum_probs=28.8

Q ss_pred             CceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307         18 MERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ   56 (106)
Q Consensus        18 ~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c   56 (106)
                      ..+|.|.     ..-.||+..++|||+.||++||||..|
T Consensus         6 ~~~F~C~-----~~g~CI~~~~~CDg~~DC~DgSDE~~C   39 (42)
T 1cr8_A            6 TDEFQCR-----LDGLCIPLRWRCDGDTDCMDSSDEKSC   39 (42)
T ss_dssp             TTCEECT-----TTCCEECGGGSSSSSCCSSSSTTTTTC
T ss_pred             CCceEeC-----CCCeEcChhhcCCCCcCCCCCCcccCC
Confidence            3689998     334699999999999999999999754

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=98.44  E-value=7.5e-08  Score=59.09  Aligned_cols=33  Identities=42%  Similarity=0.944  Sum_probs=28.9

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ   56 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c   56 (106)
                      .+|.|+     +.-.||...++|||..||++||||..|
T Consensus        10 ~~F~C~-----~~g~CI~~~~~CDG~~DC~DgSDE~~C   42 (50)
T 2knx_A           10 SSFSCP-----GTHVCVPERWLCDGDKDCADGADESIA   42 (50)
T ss_dssp             TEEEET-----TTTEEEETTTTTSSSCCSTTCGGGSGG
T ss_pred             CcEEcC-----CCCeEcChhhcCCCCCCCCCCCccccc
Confidence            589997     444799999999999999999999864

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=98.42  E-value=1.3e-07  Score=56.99  Aligned_cols=35  Identities=37%  Similarity=0.666  Sum_probs=30.3

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCcce
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFL   59 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~csC~   59 (106)
                      .+|.|.    +|  .||+.+.+|||..||+|||||.++.|.
T Consensus         9 ~~F~C~----~g--~CI~~~~~CDG~~DC~DgSDE~~c~C~   43 (45)
T 1d2l_A            9 GEFACA----NS--RCIQERWKCDGDNDCLDNSDEAPALCH   43 (45)
T ss_dssp             TCEEET----TT--EEECGGGTTTSSCTTTTCSTTSTTTCC
T ss_pred             CceEcC----CC--CeEehhhccCCCCCCCCCCCCCCCcCC
Confidence            578898    24  499999999999999999999987664

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=98.41  E-value=4.2e-08  Score=58.63  Aligned_cols=36  Identities=36%  Similarity=0.716  Sum_probs=28.2

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcC
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDR   55 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~   55 (106)
                      .+|.|.... .....||+.+++|||+.||++||||..
T Consensus         8 ~~F~C~~~~-~~~~~CIp~~~~CDG~~DC~DgSDE~~   43 (47)
T 1jrf_A            8 GQFRCSEPP-GAHGECYPQDWLCDGHPDCDDGRDEWG   43 (47)
T ss_dssp             CCSCSSSCS-CCCTTTSGGGGSSSSSCCSSSSCTTHH
T ss_pred             CeeECCCCC-CCCCeEcCHhhcCCCCcCCCCCccccc
Confidence            588998310 014469999999999999999999964

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=98.40  E-value=1e-07  Score=54.75  Aligned_cols=32  Identities=38%  Similarity=0.703  Sum_probs=27.5

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ   56 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c   56 (106)
                      .+|.|.    +|  .||..+.+|||+.||++||||..|
T Consensus         5 ~~f~C~----~g--~Ci~~~~~CDg~~DC~DgsDE~~C   36 (37)
T 1ajj_A            5 FEFHCL----SG--ECIHSSWRCDGGPDCKDKSDEENC   36 (37)
T ss_dssp             TCEECT----TS--CEECGGGTTSSSCCSTTCGGGTTC
T ss_pred             CceEcC----CC--CeechhhccCCCCCCCCCccccCC
Confidence            578998    24  499999999999999999999643

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=98.40  E-value=1.7e-07  Score=54.46  Aligned_cols=34  Identities=35%  Similarity=0.691  Sum_probs=28.5

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ   56 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c   56 (106)
                      .+|.|.+    +...||+...+|||+.||++||||..|
T Consensus         4 ~~f~C~~----~~g~Cip~~~~CDg~~DC~dgsDE~~C   37 (39)
T 3dpr_E            4 HEISCGA----HSTQCIPVSWRCDGENDCDSGEDEENC   37 (39)
T ss_dssp             TTCCCSS----SSSCCCCTTSSSSSSCCSTTTTTSTTC
T ss_pred             CceecCC----CCCCEeCccccCCCcccCcCCcccccC
Confidence            5788982    235699999999999999999999754

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=98.35  E-value=1.8e-07  Score=55.51  Aligned_cols=38  Identities=37%  Similarity=0.629  Sum_probs=29.4

Q ss_pred             ccCCCCCCCCCceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307          8 YLECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ   56 (106)
Q Consensus         8 ~~~C~~~~~G~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c   56 (106)
                      ...|++     .+|.|.    ++  .||....+|||+.||+|||||..|
T Consensus         5 ~~~C~~-----~~f~C~----~g--~CI~~~~~CDg~~DC~DgSDE~~C   42 (44)
T 3a7q_B            5 AKECEK-----DQFQCR----NE--RCIPSVWRCDEDDDCLDHSDEDDC   42 (44)
T ss_dssp             ---CCT-----TEEECT----TS--CEEEGGGTTSSSCCSSSSTTTSCC
T ss_pred             CCCCCC-----CceEcC----CC--CEeChhhccCCCCCCCCCccccCC
Confidence            346744     589998    23  599999999999999999999754

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=98.34  E-value=1.3e-07  Score=62.54  Aligned_cols=41  Identities=37%  Similarity=0.746  Sum_probs=31.8

Q ss_pred             CCCCCCCCCceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcC
Q psy12307         10 ECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDR   55 (106)
Q Consensus        10 ~C~~~~~G~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~   55 (106)
                      .|++..=...+|.|+     +.-.||+.+.+|||..||+|||||..
T Consensus         3 ~C~~~~C~~~~f~C~-----~~g~CIp~~~~CDg~~DC~DgsDE~~   43 (80)
T 2kny_A            3 KLEGKTCGPSSFSCP-----GTHVCVPERWLCDGDKDCADGADESI   43 (80)
T ss_dssp             SCSSCCCSSSEEECT-----TSSCEEEHHHHTTSSCCSSSSTTTSG
T ss_pred             CCCCCCCCCCceecC-----CCCeEcChhhcCCCCCCCCCCCcccc
Confidence            344433344689998     33469999999999999999999975

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=98.33  E-value=1.1e-07  Score=57.40  Aligned_cols=35  Identities=31%  Similarity=0.694  Sum_probs=29.2

Q ss_pred             CceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCc
Q psy12307         18 MERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQN   57 (106)
Q Consensus        18 ~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~cs   57 (106)
                      ..+|.|.     ....||...++|||+.||++||||..|.
T Consensus         9 ~~~F~C~-----~g~~CI~~~~~CDG~~DC~DgSDE~~C~   43 (48)
T 2i1p_A            9 SAQFKCA-----DGSSCINSRYRCDGVYDCRDNSDEAGCP   43 (48)
T ss_dssp             SSSEECS-----SSSCEECGGGSSSSSCCSSSSHHHHSSC
T ss_pred             CCeeECC-----CCCEeCCHhhcCCCCCCCCCCcccccCC
Confidence            4689998     3236999999999999999999997653

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=98.22  E-value=1.4e-06  Score=57.18  Aligned_cols=42  Identities=29%  Similarity=0.421  Sum_probs=33.9

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCC-cCC---c----ceEEecCCC
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDE-DRQ---N----FLLENELCW   66 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE-~~c---s----C~Fyc~~~~   66 (106)
                      .+|.|.    +|  .||+..++|||+.||++|||| ..|   .    -.|+|.++.
T Consensus         8 ~~f~C~----~g--~Ci~~~~~CDg~~DC~DgsDE~~~C~~~~C~~~~~f~C~~g~   57 (82)
T 2fyj_A            8 NQFSCA----SG--RCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGR   57 (82)
T ss_dssp             TEEETT----SS--CEEETTSSSSCSSSSCSTTTTTSSCCCSSSCSSSEEECTTSC
T ss_pred             CceEeC----CC--CEEeccccCCCcccCCCccccccccccccCCCCCceECCCCC
Confidence            689998    24  499999999999999999999 443   2    468887653

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=98.22  E-value=2.1e-07  Score=55.29  Aligned_cols=34  Identities=44%  Similarity=0.844  Sum_probs=28.7

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCcc
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNF   58 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~csC   58 (106)
                      .+|.|.    +|  .||+...+|||+.||+|||||..+.|
T Consensus         8 ~~F~C~----~g--~CI~~~~~CDg~~DC~DgSDE~~~~C   41 (44)
T 1j8e_A            8 TQFKCN----SG--RCIPEHWTCDGDNDCGDYSDETHANC   41 (44)
T ss_dssp             TEEECT----TS--CEEEGGGTTSSSCCSSSSGGGSHHHH
T ss_pred             CceEeC----CC--CeEecCcccCCCCCCCCCCCCCCccc
Confidence            589998    24  49999999999999999999976443

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=98.16  E-value=9.5e-07  Score=58.11  Aligned_cols=42  Identities=29%  Similarity=0.557  Sum_probs=34.3

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC------cceEEecCCC
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ------NFLLENELCW   66 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c------sC~Fyc~~~~   66 (106)
                      .+|.|.    +|  .||+..++|||+.||++||||..|      .-.|+|.++.
T Consensus         6 ~~F~C~----~g--~CI~~~~~CDg~~DC~DgSDE~~C~~~~C~~~~f~C~~g~   53 (80)
T 2fcw_B            6 AEFRCH----DG--KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSST   53 (80)
T ss_dssp             TEEECT----TS--CEEEGGGTTSSSCCSTTCTTTTTHHHHHCCTTEEECTTSC
T ss_pred             CccCCC----CC--CEEeeecccCCcccCCCcccccccccccCCceeeECCCCC
Confidence            589998    24  499999999999999999999864      2378887653

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=98.15  E-value=4.9e-07  Score=56.56  Aligned_cols=35  Identities=31%  Similarity=0.653  Sum_probs=29.3

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCcceEE
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLLE   61 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~csC~Fy   61 (106)
                      .+|.|.    +|  .||+...+|||..||+|||||.  .|+|.
T Consensus        10 ~~F~C~----nG--~CIp~~~~CDG~~DC~DgSDE~--~~~~~   44 (52)
T 2m0p_A           10 TQYTCD----NH--QCISKNWVCDTDNDCGDGSDEK--NCNST   44 (52)
T ss_dssp             SEEECT----TC--CEEETTSTTSSSCSSSSCHHHH--SCCCC
T ss_pred             CceECC----CC--CEEecCccCCCCCCCCCCCccc--cchhh
Confidence            589998    35  4999999999999999999996  45443

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=98.03  E-value=5.2e-06  Score=54.43  Aligned_cols=24  Identities=38%  Similarity=0.613  Sum_probs=21.2

Q ss_pred             eecCCCcccCCCCCCCCCCCCcCC
Q psy12307         33 RCIDDHVLCDGFIDCPTGEDEDRQ   56 (106)
Q Consensus        33 ~CI~~~~LCDG~~DCpdGeDE~~c   56 (106)
                      .||...++|||+.||++||||..|
T Consensus        57 ~CI~~~~~CDG~~DC~DgSDE~~C   80 (82)
T 2fyj_A           57 RCININWRCDNDNDCGDNSDEAGC   80 (82)
T ss_dssp             CEEETTCBSSSSBCCSSSSSCSCC
T ss_pred             CeEcHHHccCCCCcCCCCccccCC
Confidence            478888999999999999999754

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=97.84  E-value=3.7e-06  Score=65.19  Aligned_cols=41  Identities=34%  Similarity=0.704  Sum_probs=31.4

Q ss_pred             cCCCCCCCCCceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCcc
Q psy12307          9 LECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNF   58 (106)
Q Consensus         9 ~~C~~~~~G~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~csC   58 (106)
                      ..|++     .+|.|..    ..-.||+...+|||..||+|||||.+..|
T Consensus        52 ~~C~~-----~~F~C~~----~~g~CI~~~~~CDG~~DC~DgSDE~~~~C   92 (217)
T 2gtl_M           52 HHCDE-----HESECRG----DVPECIHDLLFCDGEKDCRDGSDEDPETC   92 (217)
T ss_dssp             CCCCT-----TEEECSS----SSCCEEEGGGTTSSSCCSSSSTTTSHHHH
T ss_pred             CCCCC-----CceecCC----CCCcEechhhccCCCCCCCCCCccccCcC
Confidence            45754     5889971    13459999999999999999999974334

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=97.82  E-value=9.3e-06  Score=63.51  Aligned_cols=41  Identities=34%  Similarity=0.767  Sum_probs=32.1

Q ss_pred             cCCCCCCCCCceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCcc
Q psy12307          9 LECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNF   58 (106)
Q Consensus         9 ~~C~~~~~G~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~csC   58 (106)
                      ..|++     .+|.|+.    ++-.||+...+|||..||+|||||.+..|
T Consensus        51 ~~C~~-----~eFqC~~----~~g~CIp~~wvCDG~~DC~DGSDE~~~~C   91 (220)
T 2gtl_N           51 THCEK-----RTFQCGG----NEQECISDLLVCDGHKDCHNAHDEDPDVC   91 (220)
T ss_dssp             CSSCT-----TEEECCS----SSCCEEETTTTTSSSCCSTTCTTSCGGGG
T ss_pred             CCCCC-----CccCcCC----CCCcEeCcceecCCCCCCCCCCccCcccC
Confidence            46744     5899971    24569999999999999999999974334

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=97.70  E-value=9.9e-06  Score=53.20  Aligned_cols=26  Identities=38%  Similarity=0.593  Sum_probs=21.9

Q ss_pred             eecCCCcccCCCCCCCCCCCCcCCcc
Q psy12307         33 RCIDDHVLCDGFIDCPTGEDEDRQNF   58 (106)
Q Consensus        33 ~CI~~~~LCDG~~DCpdGeDE~~csC   58 (106)
                      .||+...+|||+.||++||||.+..|
T Consensus        53 ~Ci~~~~~CDg~~DC~dgsDE~~~~C   78 (80)
T 2fcw_B           53 TCIPQLWACDNDPDCEDGSDEWPQRC   78 (80)
T ss_dssp             CEEEGGGTTSSSCCSTTCGGGCGGGC
T ss_pred             CEEecccccCCCcCCCCCCCcCcccC
Confidence            47888899999999999999965443

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=97.59  E-value=5.1e-05  Score=62.89  Aligned_cols=32  Identities=34%  Similarity=0.608  Sum_probs=21.2

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ   56 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c   56 (106)
                      ++|.|.    ++  .||+...+|||+.||+|||||..|
T Consensus       207 ~~~~C~----~~--~ci~~~~~Cdg~~dC~d~sDE~~C  238 (565)
T 2xrc_A          207 DFFQCV----NG--KYISQMKACDGINDCGDQSDELCC  238 (565)
T ss_dssp             --CBCT----TS--CBCCTTSTTSSSCCSSSSSSSSSB
T ss_pred             CeeECC----CC--CccCHHHcCCCcccCCCCcccccc
Confidence            346665    12  377777888888888888888654

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=97.08  E-value=0.0001  Score=56.97  Aligned_cols=34  Identities=35%  Similarity=0.745  Sum_probs=27.4

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ   56 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c   56 (106)
                      .+|.|..    +.-.||+...+|||..||++||||..|
T Consensus        58 ~~F~C~~----~~g~CIp~~~~CDG~~DC~DgSDE~~C   91 (215)
T 2gtl_O           58 HEHQCGG----DDPQCISKLFVCDGHNDCRNGEDEKDC   91 (215)
T ss_dssp             TEEECCS----SSCCEEEGGGTTSSSCCSSSCHHHHCC
T ss_pred             cceeeCC----CCCcCccccccCCCCCcCCCcccccCC
Confidence            5788841    123499999999999999999999765

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.07  E-value=0.00048  Score=57.85  Aligned_cols=39  Identities=33%  Similarity=0.583  Sum_probs=25.9

Q ss_pred             CCCceecCCCCC-CCCc-----eeecCCCcccCCCCCCCCCCCCc
Q psy12307         16 DGMERFACPTPD-HMGR-----YRCIDDHVLCDGFIDCPTGEDED   54 (106)
Q Consensus        16 ~G~de~~Cptpd-~~gR-----~~CI~~~~LCDG~~DCpdGeDE~   54 (106)
                      +|.||..|+.+. ..+.     ..||...++|||..||++||||.
T Consensus       115 dgsDE~~C~~~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~  159 (699)
T 1n7d_A          115 DGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW  159 (699)
T ss_dssp             SSCSSSSCCCCCCCSSCCCCSSSCCCCTTSTTCSSCCSSSSSSSS
T ss_pred             CCCccCCcCccccCccccCCCCCcccchhcccCCCCcCCCCcccc
Confidence            366776665321 0112     24788888999999999999993

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.97  E-value=0.00047  Score=57.88  Aligned_cols=24  Identities=46%  Similarity=0.936  Sum_probs=14.6

Q ss_pred             eecCCCcccCCCCCCCCCCCCcCC
Q psy12307         33 RCIDDHVLCDGFIDCPTGEDEDRQ   56 (106)
Q Consensus        33 ~CI~~~~LCDG~~DCpdGeDE~~c   56 (106)
                      .||...++|||..||++||||..|
T Consensus        60 ~Ci~~~~~Cdg~~dC~dgsDE~~C   83 (699)
T 1n7d_A           60 RCIPQFWRCDGQVDCDNGSDEQGC   83 (699)
T ss_dssp             CCCCSSSTTSSSCCC-CCCTTTSC
T ss_pred             ceeCcceecCCcccCCCCcccCcc
Confidence            466666666666666666666543

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=96.95  E-value=0.00067  Score=56.20  Aligned_cols=52  Identities=25%  Similarity=0.488  Sum_probs=34.0

Q ss_pred             ccCCCCCCCCCceecCCCCCCCCcee-----ecCCCcccCCCCCCCCCCCCcCCcceEEec
Q psy12307          8 YLECPPAEDGMERFACPTPDHMGRYR-----CIDDHVLCDGFIDCPTGEDEDRQNFLLENE   63 (106)
Q Consensus         8 ~~~C~~~~~G~de~~Cptpd~~gR~~-----CI~~~~LCDG~~DCpdGeDE~~csC~Fyc~   63 (106)
                      ..+|+.   +.||..|+.- ..+.+.     ||....+|||..||++|+||..|..-+|..
T Consensus       226 ~~dC~d---~sDE~~C~~c-~~~~~~C~~~~C~~~~~~cdG~~dC~~gsDE~~C~~~~~~~  282 (565)
T 2xrc_A          226 INDCGD---QSDELCCKAC-QGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVA  282 (565)
T ss_dssp             SCCSSS---SSSSSSBSSC-SSSCEEETTTEEECGGGTTSSSCCSSSCTTSSSCC------
T ss_pred             cccCCC---Cccccccccc-CCCceecCCCcccCccccCCCcccCCCCccccCcCCccccc
Confidence            456744   7888888532 123333     677779999999999999998887766653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.65  E-value=0.00029  Score=61.01  Aligned_cols=40  Identities=33%  Similarity=0.774  Sum_probs=0.0

Q ss_pred             ccCCCCCCCCCceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCcc
Q psy12307          8 YLECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNF   58 (106)
Q Consensus         8 ~~~C~~~~~G~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~csC   58 (106)
                      ...|++     .+|.|.    +|  .||...++|||..||+|||||..+.|
T Consensus        21 ~~~C~~-----~~f~C~----~g--~Ci~~~~~CDg~~dC~D~sDE~~~~C   60 (791)
T 3m0c_C           21 GDRCER-----NEFQCQ----DG--KCISYKWVCDGSAECQDGSDESQETC   60 (791)
T ss_dssp             ---------------------------------------------------
T ss_pred             cCCcCc-----CccCCC----CC--CEEehhhcCCCCccCCCCCccccccc
Confidence            446744     589997    34  49999999999999999999986333

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=96.56  E-value=0.0015  Score=54.80  Aligned_cols=41  Identities=32%  Similarity=0.701  Sum_probs=30.2

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC-cceEEecC
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ-NFLLENEL   64 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c-sC~Fyc~~   64 (106)
                      ++|.|.+   +|  .||....+|||..||.|||||..| ...+-|..
T Consensus        69 ~~f~C~~---~g--~Ci~~~~~Cdg~~dC~d~sdE~~c~~~~~~C~~  110 (537)
T 3ojy_B           69 EGFVCAQ---TG--RCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQH  110 (537)
T ss_dssp             SSEECTT---TC--CEECGGGTTSSSCCSSSSCTTSSCSSCSSCCSS
T ss_pred             CccCcCC---CC--cEeeccccCCCCCCCCCccccccCCCCCCcccc
Confidence            4566651   24  499999999999999999999887 33444543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.38  E-value=0.00055  Score=59.32  Aligned_cols=26  Identities=38%  Similarity=0.593  Sum_probs=0.0

Q ss_pred             eecCCCcccCCCCCCCCCCCCcCCcc
Q psy12307         33 RCIDDHVLCDGFIDCPTGEDEDRQNF   58 (106)
Q Consensus        33 ~CI~~~~LCDG~~DCpdGeDE~~csC   58 (106)
                      .||+..++|||..||+||+||..+.|
T Consensus       156 ~Ci~~~~~Cdg~~dC~dgsDE~~~~C  181 (791)
T 3m0c_C          156 TCIPQLWACDNDPDCEDGSDEWPQRC  181 (791)
T ss_dssp             --------------------------
T ss_pred             ccccccccCCCCCcCCCCCCcccccC
Confidence            46666677777777777777754333

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=96.36  E-value=0.002  Score=54.42  Aligned_cols=24  Identities=46%  Similarity=1.023  Sum_probs=22.2

Q ss_pred             eecCCCcccCCCCCCCCCCCCcCC
Q psy12307         33 RCIDDHVLCDGFIDCPTGEDEDRQ   56 (106)
Q Consensus        33 ~CI~~~~LCDG~~DCpdGeDE~~c   56 (106)
                      .||+...+|||..||.||+||..|
T Consensus        77 ~Ci~~~~~Cdg~~dC~d~sDE~~C  100 (554)
T 3ojy_A           77 RCLKRHLVCNGDQDCLDGSDEDDC  100 (554)
T ss_dssp             CEECGGGTTSSSCCSSSCTTSSSC
T ss_pred             EEcccccccCCcccCCCccccccC
Confidence            488899999999999999999876

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=95.28  E-value=0.0083  Score=52.72  Aligned_cols=33  Identities=36%  Similarity=0.805  Sum_probs=26.6

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCc
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQN   57 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~cs   57 (106)
                      ++|.|.    +|  .||....+|||..||.|||||..|.
T Consensus       121 ~~F~C~----~g--~ci~~~~~c~g~~dC~d~sde~~C~  153 (913)
T 3t5o_A          121 NKFRCD----SG--RCIARKLECNGENDCGDNSDERDCG  153 (913)
T ss_dssp             SEEECT----TS--CEEEGGGSSSSSCCSSSSGGGTTCS
T ss_pred             cccccC----CC--ceEccceecCCcccCCCccccccCC
Confidence            456665    23  4888899999999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	106
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	0.002
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	0.002
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	0.002
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	0.003
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	0.004
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	0.004
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	0.004
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	0.004
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	0.004
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	0.004

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.7 bits (72), Expect = 0.002
 Identities = 7/25 (28%), Positives = 10/25 (40%)

Query: 33 RCIDDHVLCDGFIDCPTGEDEDRQN 57
           CI    +C+   DC    DE  + 
Sbjct: 18 ECITLDKVCNMARDCRDWSDEPIKE 42

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.7 bits (72), Expect = 0.002
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 9/44 (20%)

Query: 11 CPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDED 54
          C   E      +C         +CI     CDG  DC +GEDE+
Sbjct: 1  CRIHE-----ISCGA----HSTQCIPVSWRCDGENDCDSGEDEE 35

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.3 bits (71), Expect = 0.002
 Identities = 10/25 (40%), Positives = 10/25 (40%)

Query: 33 RCIDDHVLCDGFIDCPTGEDEDRQN 57
           CI     CD   DC  G DE  Q 
Sbjct: 14 TCIPQLWACDNDPDCEDGSDEWPQR 38

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 30.9 bits (70), Expect = 0.003
 Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 9/43 (20%)

Query: 11 CPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDE 53
          C   E       C   D     +CI    +CDG  DC  GEDE
Sbjct: 3  CDEHE-----HQCGGDDP----QCISKLFVCDGHNDCRNGEDE 36

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 31.0 bits (70), Expect = 0.004
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 33 RCIDDHVLCDGFIDCPTGEDED 54
           CI D + CDG  DC  G DED
Sbjct: 16 ECIHDLLFCDGEKDCRDGSDED 37

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.9 bits (70), Expect = 0.004
 Identities = 10/25 (40%), Positives = 11/25 (44%)

Query: 33 RCIDDHVLCDGFIDCPTGEDEDRQN 57
          RCI +   CDG  DC    DE    
Sbjct: 17 RCIQERWKCDGDNDCLDNSDEAPAL 41

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.5 bits (69), Expect = 0.004
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 9/45 (20%)

Query: 9  LECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDE 53
          + C   +     F+C    +    RCI     CDG +DC  G DE
Sbjct: 3  VTCKSGD-----FSCGGRVN----RCIPQFWRCDGQVDCDNGSDE 38

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.9 bits (70), Expect = 0.004
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 33 RCIDDHVLCDGFIDCPTGEDED 54
          RCI +H  CDG  DC    DE 
Sbjct: 16 RCIPEHWTCDGDNDCGDYSDET 37

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.4 bits (69), Expect = 0.004
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 33 RCIDDHVLCDGFIDCPTGEDED 54
          +CI    +CD   DC  G DE 
Sbjct: 14 KCISRQFVCDSDRDCLDGSDEA 35

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.5 bits (69), Expect = 0.004
 Identities = 9/22 (40%), Positives = 9/22 (40%)

Query: 33 RCIDDHVLCDGFIDCPTGEDED 54
           CI     CDG  DC    DE 
Sbjct: 16 LCIPLRWRCDGDTDCMDSSDEK 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	98.76
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	98.74
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	98.66
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	98.64
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	98.63
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	98.62
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	98.61
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	98.6
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	98.53
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	98.52
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	98.5
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	98.47
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	98.45
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	98.44
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	98.32
d1z8ga2	110	Hepsin, N-terminal domain {Human (Homo sapiens) [T	86.11

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.6e-09  Score=64.52  Aligned_cols=37  Identities=35%  Similarity=0.619  Sum_probs=32.8

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCcceEE
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLLE   61 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~csC~Fy   61 (106)
                      .+|.|.    +|  .||+.+.+|||+.||++||||.++.|.+|
T Consensus         9 ~~f~C~----~g--~CI~~~~~CDg~~DC~DgsDE~~~~C~~h   45 (45)
T d1d2la_           9 GEFACA----NS--RCIQERWKCDGDNDCLDNSDEAPALCHQH   45 (45)
T ss_dssp             TCEEET----TT--EEECGGGTTTSSCTTTTCSTTSTTTCCCC
T ss_pred             CCeEcC----CC--CeEChhhhCcCcCcCCCCCCCCcCcCcCC
Confidence            589997    24  49999999999999999999999999876

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2.3e-09  Score=63.01  Aligned_cols=34  Identities=32%  Similarity=0.544  Sum_probs=29.9

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCc
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQN   57 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~cs   57 (106)
                      .+|.|.     +...||..+++|||+.||++||||..|.
T Consensus         7 ~~f~C~-----~~~~CI~~~~~CDg~~DC~DgsDE~~C~   40 (42)
T d1cr8a_           7 DEFQCR-----LDGLCIPLRWRCDGDTDCMDSSDEKSCE   40 (42)
T ss_dssp             TCEECT-----TTCCEECGGGSSSSSCCSSSSTTTTTCC
T ss_pred             CceEcC-----CCCEEccchhcCCCcCcCCCcchhccCC
Confidence            689998     5557999999999999999999997654

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.66  E-value=6.2e-09  Score=60.99  Aligned_cols=36  Identities=36%  Similarity=0.785  Sum_probs=30.0

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCcc
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNF   58 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~csC   58 (106)
                      .+|.|..    +.-.||+...+|||+.||+|||||.+..|
T Consensus         5 ~~f~C~~----~~g~Ci~~~~~CDg~~DC~DgsDE~~~~C   40 (41)
T d2gtln2           5 RTFQCGG----NEQECISDLLVCDGHKDCHNAHDEDPDVC   40 (41)
T ss_dssp             TEEECCS----SSCCEEETTTTTSSSCCSTTCTTSCGGGG
T ss_pred             CeeECCC----cCCCeechHHcCCCCccCCCCCccccccC
Confidence            5899971    23469999999999999999999987654

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=8.6e-09  Score=60.29  Aligned_cols=38  Identities=37%  Similarity=0.826  Sum_probs=30.9

Q ss_pred             cCCCCCCCCCceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcC
Q psy12307          9 LECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDR   55 (106)
Q Consensus         9 ~~C~~~~~G~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~   55 (106)
                      ..|++     .+|.|..    +...||+...+|||+.||+|||||..
T Consensus         3 ~~C~~-----~~f~C~~----~~~~CI~~~~~CDg~~DC~DgsDE~~   40 (41)
T d1f5ya2           3 VTCKS-----GDFSCGG----RVNRCIPQFWRCDGQVDCDNGSDEQG   40 (41)
T ss_dssp             TTCCS-----SCEECCS----SCCCEECGGGTTCSCCCSSSCTTTTT
T ss_pred             cccCC-----CceECCC----CCCCCccchhcCCCcCcCcCcccccC
Confidence            46744     5899971    34569999999999999999999964

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.3e-09  Score=60.93  Aligned_cols=35  Identities=34%  Similarity=0.683  Sum_probs=29.9

Q ss_pred             CceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307         18 MERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ   56 (106)
Q Consensus        18 ~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c   56 (106)
                      ..+|.|.    +|...||+..++|||+.||++||||..|
T Consensus         3 ~~~f~C~----~g~~~CI~~~~~CDg~~DC~DgsDE~~C   37 (39)
T d1v9u5_           3 IHEISCG----AHSTQCIPVSWRCDGENDCDSGEDEENC   37 (39)
T ss_dssp             TTSCCCS----SSSSCCCCGGGSSSSSCCSTTSGGGSSC
T ss_pred             CCceECC----CCCCCeeechhcCcCcccCCCCchhccC
Confidence            3689997    2556799999999999999999999754

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.62  E-value=3.1e-09  Score=62.60  Aligned_cols=36  Identities=36%  Similarity=0.698  Sum_probs=29.9

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCcc
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNF   58 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~csC   58 (106)
                      .+|.|+    ++...||+.+.+|||+.||+|||||.+..|
T Consensus         6 ~~f~C~----~~~~~CI~~~~~CDg~~DC~DgsDE~~~~C   41 (42)
T d2gtlm2           6 HESECR----GDVPECIHDLLFCDGEKDCRDGSDEDPETC   41 (42)
T ss_dssp             TEEECS----SSSCCEEEGGGTTSSSCCSSSSTTTSHHHH
T ss_pred             CeeECC----CCCCCEechhhcCCCCccCCCCCcCCcccC
Confidence            689998    134579999999999999999999976443

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.1e-08  Score=60.79  Aligned_cols=36  Identities=31%  Similarity=0.613  Sum_probs=30.3

Q ss_pred             CCceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCcc
Q psy12307         17 GMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNF   58 (106)
Q Consensus        17 G~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~csC   58 (106)
                      +..+|.|.    +|  .||+.+++|||+.||+|||||....|
T Consensus         8 ~~~~f~C~----~g--~CI~~~~~CDg~~DC~DgsDE~~~~C   43 (44)
T d1xfea2           8 GPNKFKCH----SG--ECITLDKVCNMARDCRDWSDEPIKEC   43 (44)
T ss_dssp             STTEEECT----TS--CEEESTTTTCSSCCCSSCSSSCTTTS
T ss_pred             CCCeEECC----CC--CeEchhhcCCCCCCCCCCCccCcccC
Confidence            45789998    24  49999999999999999999986554

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.1e-08  Score=60.38  Aligned_cols=41  Identities=32%  Similarity=0.768  Sum_probs=33.6

Q ss_pred             cccCCCCCCCCCceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCcc
Q psy12307          7 MYLECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNF   58 (106)
Q Consensus         7 ~~~~C~~~~~G~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~csC   58 (106)
                      +...|++     .+|.|.    +|  .||+.+++|||+.||++||||..+.|
T Consensus         4 ~~~~C~~-----~~f~C~----~g--~CI~~~~~CDg~~DC~DgsDE~~c~C   44 (44)
T d1f5ya1           4 VGDRCER-----NEFQCQ----DG--KCISYKWVCDGSAECQDGSDESQETC   44 (44)
T ss_dssp             SCCCCCS-----SSEECS----SS--CEECTTTTTSSSCSSSSSGGGTTSST
T ss_pred             CCCccCC-----CCeEcC----CC--CeEChhHcCCCcCcCCCCCcCCCCcC
Confidence            4456754     589998    23  59999999999999999999987765

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.53  E-value=7.2e-09  Score=60.54  Aligned_cols=35  Identities=34%  Similarity=0.705  Sum_probs=29.0

Q ss_pred             CceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307         18 MERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ   56 (106)
Q Consensus        18 ~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c   56 (106)
                      ..+|.|+.    +.-.||+.+++|||+.||+|||||..|
T Consensus         5 ~~~f~C~~----~~~~CI~~~~~CDg~~DC~dgsDE~~C   39 (41)
T d2gtlo2           5 EHEHQCGG----DDPQCISKLFVCDGHNDCRNGEDEKDC   39 (41)
T ss_dssp             TTEEECCS----SSCCEEEGGGTTSSSCCSSSCHHHHCC
T ss_pred             cCeeECCC----CCCcEeechhccCCCCcCCCCchhccC
Confidence            46899972    234599999999999999999999644

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.9e-08  Score=57.71  Aligned_cols=33  Identities=36%  Similarity=0.679  Sum_probs=28.2

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCc
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQN   57 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~cs   57 (106)
                      .+|.|.    +|  .||+..++|||+.||++||||..|+
T Consensus         5 ~~f~C~----~g--~Ci~~~~~CDg~~DC~dgsDE~~Cs   37 (37)
T d1ajja_           5 FEFHCL----SG--ECIHSSWRCDGGPDCKDKSDEENCA   37 (37)
T ss_dssp             TCEECT----TS--CEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred             CceEcC----CC--CEECchhcCCCCCcCCCCchhhccC
Confidence            589998    24  4999999999999999999997653

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.5e-08  Score=58.74  Aligned_cols=34  Identities=35%  Similarity=0.612  Sum_probs=29.0

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCcc
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNF   58 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~csC   58 (106)
                      .+|.|.    +|  .||+.+.+|||..||+|||||.+..|
T Consensus         6 ~~f~C~----~g--~CI~~~~~CDg~~DC~DgsDE~~~~C   39 (39)
T d2fcwb2           6 ASFQCN----SS--TCIPQLWACDNDPDCEDGSDEWPQRC   39 (39)
T ss_dssp             TEEECT----TS--CEEEGGGTTSSSCCSTTCGGGCGGGC
T ss_pred             CceEcC----CC--CeEChhhcCCCCCCCCCCCcCCCCcC
Confidence            489998    23  49999999999999999999987654

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=98.47  E-value=3.4e-08  Score=57.65  Aligned_cols=38  Identities=34%  Similarity=0.655  Sum_probs=29.4

Q ss_pred             CceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307         18 MERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ   56 (106)
Q Consensus        18 ~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c   56 (106)
                      ..+|.|..... ..-.||+..++|||..||++||||..|
T Consensus         4 ~~~f~C~~~~~-~~~~CIp~~~~CDg~~DC~DgsDE~~C   41 (42)
T d1k7ba_           4 PGQFRCSEPPG-AHGECYPQDWLCDGHPDCDDGRDEWGC   41 (42)
T ss_dssp             TTEECCSSCTT-SCCCCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred             cCcEEcCCCCC-CCCcEechhhcCCCcCcCcCChhhhcc
Confidence            36899974321 123599999999999999999999643

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.1e-08  Score=60.31  Aligned_cols=34  Identities=44%  Similarity=0.844  Sum_probs=29.0

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCcc
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNF   58 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~csC   58 (106)
                      .+|.|.    +|  .||+.+.+|||+.||++||||..+.|
T Consensus         8 ~~f~C~----~g--~CI~~~~~CDg~~DC~DgsDE~~c~C   41 (44)
T d1j8ea_           8 TQFKCN----SG--RCIPEHWTCDGDNDCGDYSDETHANC   41 (44)
T ss_dssp             TEEECT----TS--CEEEGGGTTSSSCCSSSSGGGSHHHH
T ss_pred             CcEEcC----CC--CEEChhhcCcCcccCCCCCcCCCCCC
Confidence            579998    23  49999999999999999999986544

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=4.1e-08  Score=56.94  Aligned_cols=32  Identities=34%  Similarity=0.654  Sum_probs=27.9

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ   56 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c   56 (106)
                      .+|.|.    +|  .||+..++|||..||++||||..|
T Consensus         6 ~~f~C~----~g--~CI~~~~~CDg~~DC~DgsDE~~C   37 (39)
T d1f8za_           6 DEFQCS----DG--NCIHGSRQCDREYDCKDMSDEVGC   37 (39)
T ss_dssp             TEEECS----SS--CEEETTTSSSCCCCSTTSGGGSSS
T ss_pred             CceEeC----CC--CeEChhhcCCCCCcCCCCchhccC
Confidence            699998    23  499999999999999999999754

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=7.7e-08  Score=55.51  Aligned_cols=32  Identities=38%  Similarity=0.813  Sum_probs=27.6

Q ss_pred             ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307         19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ   56 (106)
Q Consensus        19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c   56 (106)
                      .+|.|.    +|  .||+...+|||+.||++||||..|
T Consensus         6 ~~f~C~----~g--~CI~~~~~CDg~~DC~DgsDE~~C   37 (39)
T d2fcwb1           6 AEFRCH----DG--KCISRQFVCDSDRDCLDGSDEASC   37 (39)
T ss_dssp             TEEECT----TS--CEEEGGGTTSSSCCSTTCTTTTTH
T ss_pred             CCEEcC----CC--CEEcchhcCcCcCcCcCCchhcCC
Confidence            589998    23  599999999999999999999743

>d1z8ga2 d.170.1.2 (A:50-159) Hepsin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRCR-like
superfamily: SRCR-like
family: Hepsin, N-terminal domain
domain: Hepsin, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.11  E-value=0.15  Score=32.12  Aligned_cols=24  Identities=13%  Similarity=-0.036  Sum_probs=20.1

Q ss_pred             Cceeeeeccccccce-EEecCcchhc
Q psy12307         66 WGLSIYKALDKSTGL-RSILNWSDLV   90 (106)
Q Consensus        66 ~pLsVy~~l~~s~~l-~~~~nw~~~~   90 (106)
                      .-|.||..-+ ..|. ||+++|+...
T Consensus        12 grLeV~~~~~-g~W~~VC~d~W~~~~   36 (110)
T d1z8ga2          12 ARLMVFDKTE-GTWRLLCSSRSNARV   36 (110)
T ss_dssp             CBEEEEETTT-TEEEEEBCCTTHHHH
T ss_pred             cEEEEEEccc-ceEEeEecCCCCHHH
Confidence            4699999888 7788 9999999763