Psyllid ID: psy12350
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1129 | 2.2.26 [Sep-21-2011] | |||||||
| Q8MP06 | 456 | Senecionine N-oxygenase O | N/A | N/A | 0.326 | 0.809 | 0.284 | 2e-35 | |
| Q9FF12 | 460 | Flavin-containing monooxy | yes | N/A | 0.255 | 0.626 | 0.273 | 8e-31 | |
| Q9FWW6 | 468 | Flavin-containing monooxy | no | N/A | 0.262 | 0.632 | 0.286 | 2e-25 | |
| Q9SXE1 | 462 | Flavin-containing monooxy | no | N/A | 0.289 | 0.707 | 0.259 | 2e-24 | |
| Q9SS04 | 459 | Flavin-containing monooxy | no | N/A | 0.271 | 0.668 | 0.255 | 2e-24 | |
| Q9FLK4 | 461 | Flavin-containing monooxy | no | N/A | 0.189 | 0.464 | 0.311 | 6e-24 | |
| A8MRX0 | 459 | Flavin-containing monooxy | no | N/A | 0.274 | 0.675 | 0.283 | 2e-23 | |
| Q9FWW9 | 465 | Flavin-containing monooxy | no | N/A | 0.252 | 0.612 | 0.269 | 4e-23 | |
| Q94BV5 | 452 | Flavin-containing monooxy | no | N/A | 0.245 | 0.612 | 0.276 | 1e-22 | |
| Q93Y23 | 461 | Flavin-containing monooxy | no | N/A | 0.275 | 0.674 | 0.268 | 1e-22 |
| >sp|Q8MP06|SNO1_TYRJA Senecionine N-oxygenase OS=Tyria jacobaeae GN=sno1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 119/418 (28%), Positives = 188/418 (44%), Gaps = 49/418 (11%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNL 807
G GL + L + G +T FE NIGGTW Y +G D+ G+P++SS YK+L+ N
Sbjct: 34 GYSGLATARYLQDYGLNYTI--FEATPNIGGTWRYDPRVGTDEDGIPIYSSNYKNLRVNS 91
Query: 808 PKDLMELCGYGHK--------GNA----DKSYIGAKDVLEN----------------YNH 839
P DLM GY + GN KS++ ++EN +N
Sbjct: 92 PVDLMTYHGYEFQEGTRSFISGNCFYKYMKSFVRHFGLMENIQVRSLVTWVQRTEDKWNL 151
Query: 840 PIYPEFKGKDM---CQIPILHSRDYRTPE-PFAGKQAVVVGSGQSGLDITLDIATTGKQA 895
K+ C ++ S ++ TP+ P Q G D + G++
Sbjct: 152 TYMKTDTRKNYTEECDFVVVASGEFSTPKIPHIKGQEEYKGKTMHSHDYKEAESFRGQRV 211
Query: 896 VVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLC----LPNNVVLKPDVAELTPTGVR 951
+V+G+G SGLD+ + ++ S + S H + + P N + KP+V T G
Sbjct: 212 LVIGAGPSGLDVVMQLSNITSKLVHSQHILKSWHIFNQPDFPGNFISKPNVKHFTANGAV 271
Query: 952 FQDGSYEQVDIILCCTGYSNHYPFLHE-SCGIKVVNKNVQPLYKHTINIEHPTMFILGVP 1010
F+D + E+ D+++ CTG+ ++PFL S GI V PLY+ +NI PTM +G+
Sbjct: 272 FEDDTVEEFDMVIYCTGFYYNHPFLSTLSSGITATENYVMPLYQQVVNINQPTMTFVGIC 331
Query: 1011 RHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNT-FHIIGHR 1069
+ L D Q +L GH LPS+++ML + V L E Q T + +G
Sbjct: 332 K-PFFAKLLDQQAHYSAKLAAGHFKLPSQDKMLRHWLEHV-QMLREAQFKITDVNSVGPN 389
Query: 1070 SENFLNSIISMMRDESP---LPPVLLKVYFDSYGQLTEDFIGFRNNKYQIFNDQAYVR 1124
+ + + + E+ LPPV V+ S L ED +R Y+I +D + +
Sbjct: 390 VDEYFKA----LHKEAGVPLLPPVYASVFVFSGKTLLEDLQNYREYDYRIISDTQFKK 443
|
NADPH-dependent monooxygenase that detoxifies senecionine and similar plant alkaloids that are ingested by the larvae. Is active towards a narrow range of related substrates with highest activity towards senecionine, followed by seneciphylline, retrorsine, monocrotaline, senecivernine, axillarine and axillaridine. Tyria jacobaeae (taxid: 179666) EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 1EC: 0EC: 1 |
| >sp|Q9FF12|GSXL9_ARATH Flavin-containing monooxygenase FMO GS-OX-like 9 OS=Arabidopsis thaliana GN=At5g07800 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 106/387 (27%), Positives = 163/387 (42%), Gaps = 99/387 (25%)
Query: 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHI----------G 787
KVC V GP GL + + L + G+ EQ +++GG W Y ++ G
Sbjct: 15 KVC---VIGAGPAGLVSARELRKEGH--KVVVLEQNEDVGGQWFYQPNVEEEDPLGRSSG 69
Query: 788 CDQYGLPVHSSMYKSLKTNLPKDLMELCGY--------------GHKG------------ 821
L VHSS+Y SL+ P+++M + GHK
Sbjct: 70 SINGELKVHSSIYSSLRLTSPREIMGYSDFPFLAKKGRDMRRFPGHKELWLYLKDFSEAF 129
Query: 822 --------NADKSYIGAKD-------------------VLE-----------NYNHPIYP 843
N ++G K+ V+E +Y+HP P
Sbjct: 130 GLREMIRFNVRVEFVGEKEEEDDVKKWIVRSREKFSGKVMEEIFDAVVVATGHYSHPRLP 189
Query: 844 EFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQS 903
KG D + +HS YR P+PF + VVVG+ SG DI++++ K+ +
Sbjct: 190 SIKGMDSWKRKQIHSHVYRVPDPFRNEVVVVVGNSMSGQDISMELVEVAKEVHLSAK--- 246
Query: 904 GLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTG-VRFQDGSYEQVDI 962
TLDI++ S V H N+++ P + L G V F DGS+ D
Sbjct: 247 ----TLDISSGLSKVISKH-----------PNLLIHPQIESLEDDGKVIFVDGSWVVADT 291
Query: 963 ILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTI-NIEHPTMFILGVPRHTLLFNLFDL 1021
IL CTGYS +PFL I+V + V PL++HT P++ +G+PR + F F+
Sbjct: 292 ILYCTGYSYKFPFLESKGRIEVDDDRVGPLFEHTFPPCLSPSLSFVGIPRKLIGFPFFEA 351
Query: 1022 QVRLFQQLMQGHITLPSKEEMLADTKQ 1048
Q + Q++ G +LPS ++ML +
Sbjct: 352 QAKWIAQVLSGKSSLPSPDQMLQSVDE 378
|
Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: - EC: . EC: - |
| >sp|Q9FWW6|GSXL1_ARATH Flavin-containing monooxygenase FMO GS-OX-like 1 OS=Arabidopsis thaliana GN=At1g12160 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/346 (28%), Positives = 159/346 (45%), Gaps = 50/346 (14%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLP-----VHSSMYKS 802
G GL A + L G+ T FE+ ++GG W+YT+ + D + VHSS+Y+S
Sbjct: 18 GAAGLVAVRELRREGH--TVIGFEREKHVGGLWVYTDRVDSDSVSVDPDRTIVHSSIYQS 75
Query: 803 LKTNLPKDLMELCGY---GHKGNAD-KSYIGAKDVLENYNHPIYPEFKGKDMCQIPI--- 855
L+TNLP++ M + + D + Y ++VL Y EFK +DM +
Sbjct: 76 LRTNLPRECMGYSDFPFVTRSSDGDPRRYPDHREVL-MYLQDFAKEFKIEDMIRFETEVL 134
Query: 856 ------LHSRDYR----TPEPFAGKQ---AVVVGSGQSGLDITLDI----ATTGKQ---- 894
++R +R + +G++ AVVV +G I + GKQ
Sbjct: 135 CVEPSPENNRKWRVQFKSSNGVSGEEIFDAVVVCNGHFTEPRLAHIPGIESWPGKQIHSH 194
Query: 895 ------------AVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDV 942
+V+GS SG DI+ DIAT A V +S S +N+ + P +
Sbjct: 195 NYRIPDPFKDEVVIVIGSQASGNDISTDIATIAKEVHISSKMVASDSYGCYDNLRIHPTI 254
Query: 943 AELTPTG-VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTI-NIE 1000
G V F++G D I+ CTGY H+PFL S + V + V PLYKH
Sbjct: 255 YRAREDGSVVFRNGKVVFADAIVHCTGYKYHFPFLKTSGYVTVEDNRVGPLYKHVFPPAL 314
Query: 1001 HPTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADT 1046
P + +G+P L F +F++Q + ++ G + LP++++M+ +
Sbjct: 315 APGISFIGLPFMGLQFFMFEIQSKWVASVLSGRVKLPAEDKMMEEA 360
|
Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: - EC: . EC: - |
| >sp|Q9SXE1|GSOX3_ARATH Flavin-containing monooxygenase FMO GS-OX3 OS=Arabidopsis thaliana GN=FMOGS-OX3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/381 (25%), Positives = 169/381 (44%), Gaps = 54/381 (14%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGL-----PVHSSMYKS 802
GP GL ++ L G+ + FE+ +GG W+YT D L VHSS+Y+S
Sbjct: 19 GPAGLITSRELRREGH--SVVVFEREKQVGGLWVYTPKSDSDPLSLDPTRSKVHSSIYES 76
Query: 803 LKTNLPKDLME------LCGYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDM------ 850
L+TN+P++ M L + + + Y ++VL Y EFK ++M
Sbjct: 77 LRTNVPRESMGVRDFPFLPRFDDESRDARRYPNHREVLA-YIQDFAREFKIEEMIRFETE 135
Query: 851 -CQIPILHSRDYRTPEPFAGK-------QAVVVGSGQSGLDITLDI----ATTGKQ---- 894
++ + + ++R +G AVVV +G I + GKQ
Sbjct: 136 VVRVEPVDNGNWRVQSKNSGGFLEDEIYDAVVVCNGHYTEPNIAHIPGIKSWPGKQIHSH 195
Query: 895 ------------AVVVGSGQSGLDITLDIATRASTVFLSHHSER---VTSLCLP-NNVVL 938
VV+G+ SG DI+ DIA A V ++ + + +P NN+ +
Sbjct: 196 NYRVPDPFENEVVVVIGNFASGADISRDIAKVAKEVHIASRAREPHTYEKISVPQNNLWM 255
Query: 939 KPDVAELTPTG-VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTI 997
++ G + F++G D I+ CTGY ++PFL + +++ K V+PLYKH
Sbjct: 256 HSEIDTTHEDGSIVFKNGKVIFADSIVYCTGYKYNFPFLETNGYLRIDEKRVEPLYKHVF 315
Query: 998 NIE-HPTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNE 1056
P + +G+P ++F +F++Q + ++ G +TLPS ++M+ D +
Sbjct: 316 PPALAPGLAFVGLPAMGIVFVMFEIQSKWVAAVLSGRVTLPSTDKMMEDINAWYASLDAL 375
Query: 1057 GQNPNTFHIIGHRSENFLNSI 1077
G H IG +LN +
Sbjct: 376 GIPKRHTHTIGRIQSEYLNWV 396
|
Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Prefers probably short-chain methylthioalkyl glucosinolates in cv. Landsberg erecta. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: - EC: . EC: - |
| >sp|Q9SS04|GSOX1_ARATH Flavin-containing monooxygenase FMO GS-OX1 OS=Arabidopsis thaliana GN=FMOGS-OX1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/400 (25%), Positives = 166/400 (41%), Gaps = 93/400 (23%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLP-----VHSSMYKS 802
G GL + L G+ T F++ +GG W Y+ D L VH+S+Y+S
Sbjct: 19 GAAGLVTARELRREGH--TVVVFDREKQVGGLWNYSSKADSDPLSLDTTRTIVHTSIYES 76
Query: 803 LKTNLPKDLMELCGYG-----HKGNAD-KSYIGAKDVLENYNHPIYPEFKGKDM------ 850
L+TNLP++ M + H + D + Y ++VL Y EFK ++M
Sbjct: 77 LRTNLPRECMGFTDFPFVPRIHDISRDSRRYPSHREVLA-YLQDFAREFKIEEMVRFETE 135
Query: 851 --CQIPI------------------------------------------------LHSRD 860
C P+ +HS +
Sbjct: 136 VVCVEPVNGKWSVRSKNSVGFAAHEIFDAVVVCSGHFTEPNVAHIPGIKSWPGKQIHSHN 195
Query: 861 YRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFL 920
YR P PF + VV+G+ SG DI+ DIA K+ + IA+RAS
Sbjct: 196 YRVPGPFNNEVVVVIGNYASGADISRDIAKVAKE--------------VHIASRAS---- 237
Query: 921 SHHSERVTSLCLP-NNVVLKPDVAELTPTG-VRFQDGSYEQVDIILCCTGYSNHYPFLHE 978
S+ L +P NN+ + ++ G + F++G D I+ CTGY ++PFL
Sbjct: 238 --ESDTYQKLPVPQNNLWVHSEIDFAHQDGSILFKNGKVVYADTIVHCTGYKYYFPFLET 295
Query: 979 SCGIKVVNKNVQPLYKHT-INIEHPTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLP 1037
+ I + V+PLYKH + P++ +G+P + F +F++Q + ++ G + LP
Sbjct: 296 NGYININENRVEPLYKHVFLPALAPSLSFIGLPGMAIQFVMFEIQSKWVAAVLSGRVILP 355
Query: 1038 SKEEMLADTKQEVLAHLNEGQNPNTFHIIGHRSENFLNSI 1077
S+++M+ D + G H +G S +LN I
Sbjct: 356 SQDKMMEDIIEWYATLDVLGIPKRHTHKLGKISCEYLNWI 395
|
Catalyzes the conversion of methylthioalkyl glucosinolates into methylsulfinylalkyl glucosinolates. Able to S-oxygenate both desulfo- and intact 4-methylthiobutyl glucosinolates, but no activity with methionine, dihomomethionine or 5-methylthiopentaldoxime. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: - EC: . EC: - |
| >sp|Q9FLK4|GSXL8_ARATH Flavin-containing monooxygenase FMO GS-OX-like 8 OS=Arabidopsis thaliana GN=At5g61290 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 110/234 (47%), Gaps = 20/234 (8%)
Query: 836 NYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQA 895
+Y++P P KG D+ + LHS YR PEPF + VVVG SG DI++++ K+
Sbjct: 180 HYSYPRLPTIKGMDLWKRKQLHSHIYRVPEPFCDEVVVVVGCSMSGQDISIELVEVAKEV 239
Query: 896 VVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTG-VRFQD 954
+ +LDI S V H N+ L P + L G V F+D
Sbjct: 240 HLSTK-------SLDIPPGLSKVIEKHQ-----------NLHLHPQIESLEEDGRVIFED 281
Query: 955 GSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIE-HPTMFILGVPRHT 1013
GS D IL CTGY +PFL +++ + V PL++HT + P + +G+PR
Sbjct: 282 GSCIVADTILYCTGYEYKFPFLESKGRVEIDDNRVGPLFEHTFSPSLSPFLSFVGIPRKL 341
Query: 1014 LLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIG 1067
+ F F+ Q + +L+ G +LPS ++M+ LA +G H I
Sbjct: 342 IGFPFFESQAKWIAKLLSGKTSLPSSDQMMQSISDFYLAREADGIPKRNTHDIA 395
|
Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: - EC: . EC: - |
| >sp|A8MRX0|GSOX5_ARATH Flavin-containing monooxygenase FMO GS-OX5 OS=Arabidopsis thaliana GN=FMOGS-OX5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 105/371 (28%), Positives = 161/371 (43%), Gaps = 61/371 (16%)
Query: 766 TCTTFEQADNIGGTWLYTEHIGCDQYGLP-----VHSSMYKSLKTNLPKDLMELCGY--- 817
T FE+ +GG W+YT + D L VHSS+Y SL+TNLP++ M +
Sbjct: 35 TVVVFERDSKVGGLWVYTPNSEPDPLSLDPNRTIVHSSVYDSLRTNLPRECMGYRDFPFV 94
Query: 818 ----GHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMC----QIPILHSRD--YRTPEPF 867
+ + Y ++VL Y EFK +M ++ ++ D +R
Sbjct: 95 PRPEDDESRDSRRYPSHREVLA-YLEDFAREFKLVEMVRFKTEVVLVEPEDKKWRVQSKN 153
Query: 868 AGK-------QAVVVGSGQ---------SGLDITLDIATTGKQ----------------A 895
+ AVVV +G G+D + GKQ
Sbjct: 154 SDGISKDEIFDAVVVCNGHYTEPRVAHVPGID-----SWPGKQIHSHNYRVPDQFKDQVV 208
Query: 896 VVVGSGQSGLDITLDIATRASTVFL---SHHSERVTSLCLPNNVVLKPDVAELTPTG-VR 951
VV+G+ SG DI+ DI A V + S+ S+ + L NN+ L + + G +
Sbjct: 209 VVIGNFASGADISRDITGVAKEVHIASRSNPSKTYSKLPGSNNLWLHSMIESVHEDGTIV 268
Query: 952 FQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIE-HPTMFILGVP 1010
FQ+G Q D I+ CTGY H+PFL+ + I V + V PLY+H P + +G+P
Sbjct: 269 FQNGKVVQADTIVHCTGYKYHFPFLNTNGYITVEDNCVGPLYEHVFPPALAPGLSFIGLP 328
Query: 1011 RHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGHRS 1070
TL F +F+LQ + + G +TLPS+E+M+ D GQ H +G
Sbjct: 329 WMTLQFFMFELQSKWVAAALSGRVTLPSEEKMMEDVTAYYAKREAFGQPKRYTHRLGGGQ 388
Query: 1071 ENFLNSIISMM 1081
++LN I +
Sbjct: 389 VDYLNWIAEQI 399
|
Catalyzes the conversion of methylthioalkyl glucosinolates into methylsulfinylalkyl glucosinolates. Specific for 8-methylthiooctyl (8-MTO) glucosinolates. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: - EC: . EC: - |
| >sp|Q9FWW9|GSXL2_ARATH Flavin-containing monooxygenase FMO GS-OX-like 2 OS=Arabidopsis thaliana GN=At1g12200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 138/338 (40%), Gaps = 53/338 (15%)
Query: 763 NGFTCTTFEQADNIGGTWLYTEHIGCDQYGLP-----VHSSMYKSLKTNLPKDLMELCGY 817
G + E+ IGG W YT + D L VHSS+Y+SL+TN+P++ M +
Sbjct: 33 EGHSVVVLERGSQIGGVWAYTSQVEPDPLSLDPTRPVVHSSLYRSLRTNIPRECMGFTDF 92
Query: 818 -----GHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQI--PILHSRDYRTPEPFAGK 870
H G+ D A + Y EF ++M + ++ + GK
Sbjct: 93 PFATRPHDGSRDPRRHPAHTEVLAYLRDFAKEFDIEEMVRFETEVVKAEQVAAEGEERGK 152
Query: 871 QAVVVGSGQSGLDITLDIATT--------------------GKQ---------------- 894
V S +D D GKQ
Sbjct: 153 WRVESRSSDGVVDEIYDAVVVCNGHYTEPRHALITGIDSWPGKQIHSHNYRVPDQFKDQV 212
Query: 895 AVVVGSGQSGLDITLDIATRASTVFLSHHS---ERVTSLCLPNNVVLKPDVAELTPTG-V 950
+V+GS SG+DI DIA A V +S S + L N+ L + G V
Sbjct: 213 VIVIGSSASGVDICRDIAQVAKEVHVSSRSTSPDTYEKLTGYENLWLHSTIQIAREDGSV 272
Query: 951 RFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIE-HPTMFILGV 1009
F++G D I+ CTGY ++PFL + V + V PLYKH P++ +G+
Sbjct: 273 VFENGKTIYADTIMHCTGYKYYFPFLDTKGEVTVDDNRVGPLYKHVFPPALAPSLSFIGL 332
Query: 1010 PRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTK 1047
P F +F+LQ + ++ G ++LPS++EM+ DTK
Sbjct: 333 PWQITPFPMFELQSKWVAAVLSGRVSLPSQDEMMEDTK 370
|
Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: - EC: . EC: - |
| >sp|Q94BV5|GSXL4_ARATH Flavin-containing monooxygenase FMO GS-OX-like 4 OS=Arabidopsis thaliana GN=At1g62600 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 152/347 (43%), Gaps = 70/347 (20%)
Query: 763 NGFTCTTFEQADNIGGTWLYTEHIGCDQYGLP-----VHSSMYKSLKTNLPKDLMELCGY 817
G + FE+ +GGTW+YT+HI D + VHSS+Y SL+TNLP++ M
Sbjct: 32 EGHSVVVFERQKQVGGTWIYTDHIEPDPLSVDPTRSVVHSSVYGSLRTNLPRECM----- 86
Query: 818 GHKGNADKSYIGAKDVLENYNHPIYP--------------EFKGKDMCQIPILHSRDYRT 863
G D ++ DV E+ + +P EF ++M + +
Sbjct: 87 ---GYRDFPFVIRSDVSESRDPRRFPSHGEVLAYLQDFAKEFAIEEMIRFDTAVVKVAPA 143
Query: 864 PEPFAGK------------------QAVVVGSGQ----SGLDITLDIATTGKQ------- 894
E +GK AVVV +G +I + GK+
Sbjct: 144 AEEGSGKWRIESTEKEKKVLRDEIYDAVVVCNGHYIEPRHAEIPGISSWPGKEMHSHNYR 203
Query: 895 ---------AVVVGSGQSGLDITLDIATRASTVFLSHHSERV-TSLCLP--NNVVLKPDV 942
V++G+ S DI+ DIA A V ++ S T + P +N+ + +
Sbjct: 204 IPEPFRDQVVVLIGNSASADDISRDIARVAKEVHVACRSNAADTYIERPGYSNLWMHSMI 263
Query: 943 AELTPTG-VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEH 1001
+ G V FQ+G VD+I+ CTGY H+PFL + + V + V PLYK +
Sbjct: 264 ESVHEDGSVVFQNGKTISVDVIMHCTGYKYHFPFLETNGNVTVDDNRVGPLYKDVFSPAF 323
Query: 1002 -PTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTK 1047
P + +G+P + F +F+LQ + ++ G I LPSKE+M+ + K
Sbjct: 324 APWLSFVGIPWKVVPFPMFELQSKWIAGVLSGRIPLPSKEDMMMEIK 370
|
Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: - EC: . EC: - |
| >sp|Q93Y23|GSOX4_ARATH Flavin-containing monooxygenase FMO GS-OX4 OS=Arabidopsis thaliana GN=FMOGS-OX4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 100/372 (26%), Positives = 158/372 (42%), Gaps = 61/372 (16%)
Query: 764 GFTCTTFEQADNIGGTWLYTEHIGCDQYGLP-----VHSSMYKSLKTNLPKDLMELCGYG 818
G T ++ +GG W+YT D+ GL VHSS+YKSL+TNLP++ M +
Sbjct: 33 GHTVVVLDREKQVGGLWVYTPETESDELGLDPTRPIVHSSVYKSLRTNLPRECMGYKDFP 92
Query: 819 HKGNAD------KSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQA 872
D + Y ++VL Y EF ++M I + EP GK
Sbjct: 93 FVPRGDDPSRDSRRYPSHREVLA-YLQDFATEFNIEEM----IRFETEVLRVEPVNGKWR 147
Query: 873 V--VVGSGQSGLDITLDI-------------------ATTGKQ----------------A 895
V G G S +I + + G+Q
Sbjct: 148 VQSKTGGGFSNDEIYDAVVMCCGHFAEPNIAQIPGIESWPGRQTHSHSYRVPDPFKDEVV 207
Query: 896 VVVGSGQSGLDITLDIATRASTVFLSHHSERVTSL---CLPNNVVL---KPDVAELTPTG 949
VV+G+ SG DI+ DI+ A V ++ + + + +PNN + + D A T
Sbjct: 208 VVIGNFASGADISRDISKVAKEVHIASRASKSNTFEKRPVPNNNLWMHSEIDTAHEDGTI 267
Query: 950 VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIE-HPTMFILG 1008
V F++G D I+ CTGY ++PFL + ++V + V+PLYKH P + +G
Sbjct: 268 V-FKNGKVVHADTIVHCTGYKYYFPFLETNNYMRVDDNRVEPLYKHIFPPALAPGLSFIG 326
Query: 1009 VPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGH 1068
+P L F +F++Q + ++ G +TLPS +EM+ D K G H +G
Sbjct: 327 LPAMGLQFYMFEVQSKWVAAVLSGRVTLPSVDEMMDDLKLSYETQEALGIPKRYTHKLGK 386
Query: 1069 RSENFLNSIISM 1080
+L+ I +
Sbjct: 387 SQCEYLDWIADL 398
|
Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: - EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1129 | ||||||
| 193659748 | 444 | PREDICTED: flavin-containing monooxygena | 0.315 | 0.801 | 0.382 | 2e-78 | |
| 193659750 | 448 | PREDICTED: flavin-containing monooxygena | 0.330 | 0.832 | 0.407 | 1e-76 | |
| 380027061 | 419 | PREDICTED: dimethylaniline monooxygenase | 0.312 | 0.842 | 0.336 | 2e-63 | |
| 66500583 | 419 | PREDICTED: flavin-containing monooxygena | 0.312 | 0.842 | 0.329 | 4e-63 | |
| 383864815 | 419 | PREDICTED: flavin-containing monooxygena | 0.312 | 0.842 | 0.334 | 5e-63 | |
| 156537946 | 423 | PREDICTED: flavin-containing monooxygena | 0.314 | 0.839 | 0.328 | 1e-61 | |
| 296427835 | 432 | flavin-dependent monooxygenase FMO3A [Bo | 0.291 | 0.761 | 0.338 | 2e-61 | |
| 297206721 | 432 | flavin-dependent monooxygenase FMO3 prec | 0.290 | 0.759 | 0.343 | 3e-60 | |
| 312371814 | 416 | hypothetical protein AND_21611 [Anophele | 0.322 | 0.875 | 0.345 | 4e-59 | |
| 340709203 | 419 | PREDICTED: flavin-containing monooxygena | 0.332 | 0.894 | 0.332 | 4e-58 |
| >gi|193659748|ref|XP_001946449.1| PREDICTED: flavin-containing monooxygenase FMO GS-OX3-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 167/437 (38%), Positives = 234/437 (53%), Gaps = 81/437 (18%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNL 807
G GL A K T G+ F C FEQ DN+GGTW+YT+ +G D+YGLPVHSSMYKSL+TNL
Sbjct: 17 GGAGLAAIKHFTAEGSLFKCVAFEQTDNVGGTWVYTDRVGKDKYGLPVHSSMYKSLRTNL 76
Query: 808 PK-----------------------------------DLMELCGYGH--------KGNAD 824
PK DLM+ + H +GN
Sbjct: 77 PKEIMELQGFPHKGPEDKSYVAANEMLKYLEDYADHFDLMKHIKFHHHVKEISPLEGNRW 136
Query: 825 K--------------SYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGK 870
+ + G + NY++P PE G + + +HS DYR F
Sbjct: 137 RVTVIDLQENNVEILEFDGVIICIGNYSNPAIPEVPGIEKFRGIKMHSHDYRDSSVF--- 193
Query: 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSL 930
K V+G G SGLDI+ DIA A V+LSHH++RV ++
Sbjct: 194 --------------------KDKSIAVIGCGPSGLDISFDIAKVAEKVYLSHHNQRVKNM 233
Query: 931 CLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQ 990
P+N+V K D+ E+ G+ FQDGSYEQVD IL CTGY+ YPFL CGI+V N +V+
Sbjct: 234 KFPSNMVQKTDIKEVVENGIVFQDGSYEQVDSILYCTGYNYKYPFLSPECGIRVENNHVK 293
Query: 991 PLYKHTINIEHPTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEV 1050
PL+KH +NIEHPTM+ +G+P +T F + DLQV+ + ++G + LPSKEEM+ DT+ +V
Sbjct: 294 PLFKHVLNIEHPTMYFIGIPTNTAGFCMIDLQVQFAKTFLEGRMKLPSKEEMIEDTRLDV 353
Query: 1051 LAHLNEGQNPNTFHIIGHRSENFLNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFR 1110
L G P H++G RS+++ +S+ S+ ES + PV+L++YFD + DF FR
Sbjct: 354 ELRLASGLRPKELHMMGRRSKDYYDSLASLSGLES-VSPVVLQIYFDGIDRFMCDFSHFR 412
Query: 1111 NNKYQIFNDQAYVRTGP 1127
+KY++ + Y+ P
Sbjct: 413 EDKYKLLDKDHYMVKFP 429
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193659750|ref|XP_001944207.1| PREDICTED: flavin-containing monooxygenase FMO GS-OX4-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 295 bits (755), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 232/412 (56%), Gaps = 39/412 (9%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNL 807
G GL A K + F C FEQ +IGGTW+YT+ + DQYGLPVHSSMYKSL++NL
Sbjct: 19 GASGLAALKNFAANDSLFKCVAFEQTASIGGTWVYTDDVDRDQYGLPVHSSMYKSLRSNL 78
Query: 808 PKDLMELCGYGHKGNADKSYIGA-------KDVLENYNHPIYPEFKGKDMCQIPILHSRD 860
PK++MEL G+ H G D Y A D +++N + +F PI +S+
Sbjct: 79 PKEIMELSGFPHTGVGDACYFPAAYIQKYLNDFTDHFNLRPHIKFHHHVEKVRPINNSQW 138
Query: 861 --------YRTPEPFAGKQAVVVGSGQSGLDITLDIATT--------------------G 892
+T E F A+V+ G D+ + G
Sbjct: 139 ELNVINLLQQTKETFIF-DALVICVGNYSNPAIPDVKGSNIFSGKIMHSHSYRDADSFKG 197
Query: 893 KQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRF 952
+V+G G SGLDI+ + A VFLSHH R+ +L +P+N K DV E+ GV F
Sbjct: 198 NSVLVIGCGASGLDISFGASKVADKVFLSHHHPRLLNLKIPSNYFHKTDVKEIVEDGVIF 257
Query: 953 QDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH 1012
QDGSYE++D I+ CTGY+ YPFL CGIKV + ++ L+KH INIE+PTM +GVPR+
Sbjct: 258 QDGSYEKIDTIVYCTGYTYKYPFLSSECGIKVEDNVIKNLFKHMINIEYPTMGFIGVPRN 317
Query: 1013 TLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIG--HRS 1070
T F LFDLQ R+F+++++G + +PSKEEML DT +E+ L GQ H +G +
Sbjct: 318 TTGFYLFDLQSRIFKKILEGGVKMPSKEEMLQDTYKEIEDRLASGQRLKDLHALGKTKWA 377
Query: 1071 ENFLNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFRNNKYQIFNDQAY 1122
+ S+ E P PPVLL++YFD G+L+EDF+ FR +KYQI + + Y
Sbjct: 378 MEYYTSVSKFAGVEHP-PPVLLQIYFDGIGRLSEDFLNFRGDKYQIIDREHY 428
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380027061|ref|XP_003697254.1| PREDICTED: dimethylaniline monooxygenase [N-oxide-forming] 2-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 146/434 (33%), Positives = 213/434 (49%), Gaps = 81/434 (18%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNL 807
G GL A + T +E+ D +GGTW+Y E G D+YGLP+H+SMYK+L+TNL
Sbjct: 9 GSAGLAALRHCTSDTYDTQVICYEKTDQVGGTWVYREETGLDRYGLPIHTSMYKNLRTNL 68
Query: 808 PKDLMELCGYGHKGNAD-----------------------------------------KS 826
PK++M Y N D K
Sbjct: 69 PKEVMGYPDYPVPDNPDSYLTRTQILEFLNSYCDHFNLRQYIQFLHNVELVEPSIGDRKW 128
Query: 827 YIGAKDVLEN----------------YNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGK 870
I KD+ +N Y P P KG+ + Q LHS DYR P+ F
Sbjct: 129 MIKVKDLKKNIILEESFDAVMICNGHYFEPSIPNLKGQQIFQGEQLHSHDYRVPDIF--- 185
Query: 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSL 930
T K VV+G+G SG+D+ L+I+ +A V LSHH +
Sbjct: 186 --------------------TDKTIVVLGAGPSGMDLALEISKKAKRVILSHHLKDPIGT 225
Query: 931 CLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQ 990
P+NVV KPDV ELT GV F+D + E VD I CTGY +PFL E CG++V + V
Sbjct: 226 VFPDNVVQKPDVKELTEHGVLFKDDTNESVDAIFYCTGYKYSFPFLSEKCGVRVDSNMVT 285
Query: 991 PLYKHTINIEHPTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEV 1050
PL+KH I+IE+PT+ ++G+P + F++FDLQVR + G PSK +ML + QE+
Sbjct: 286 PLWKHLISIENPTLALIGLPFYVCAFSMFDLQVRFVLRYWSGKKDFPSKADMLKEETQEL 345
Query: 1051 LAHLNEGQNPNTFHIIGHRSENFLNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFR 1110
+ EG FH++G + + + N + + +PLPPVL K++ +S +D + +R
Sbjct: 346 ESRKKEGLQKKHFHMMGFKQDRYYNDLANTA-GITPLPPVLTKLHNESSLLFLDDLVHYR 404
Query: 1111 NNKYQIFNDQAYVR 1124
+Y+I +D +++
Sbjct: 405 EKRYKIIDDYNFIQ 418
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: |
| >gi|66500583|ref|XP_394164.2| PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 3-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 250 bits (638), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 143/434 (32%), Positives = 212/434 (48%), Gaps = 81/434 (18%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNL 807
G GL A + T N +E+ D +GGTW+Y E G D+YGLP+H+SMYK+L+TNL
Sbjct: 9 GSAGLAALRHCTSDTNNTQVICYEKTDQVGGTWVYREETGLDRYGLPIHTSMYKNLRTNL 68
Query: 808 PKDLMELCGYGHKGNAD-----------------------------------------KS 826
PK++M Y N D K
Sbjct: 69 PKEVMGYPDYPVPDNPDSYLTRTQILEFLNLYCDHFNLRQYIQFLHNVELVEPSVGDRKW 128
Query: 827 YIGAKDVLEN----------------YNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGK 870
I KD+ N Y P P KG+ + Q LHS DYR P+ F
Sbjct: 129 MIKVKDLKRNIILEESFDAVMICNGHYFEPSIPNLKGQQIFQGEQLHSHDYRVPDIF--- 185
Query: 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSL 930
T K VV+G+G SG+D+ L+I+ +A + LSHH +
Sbjct: 186 --------------------TDKTVVVLGAGPSGMDLALEISKKAKRIILSHHLKDPIGT 225
Query: 931 CLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQ 990
P+NVV KPD+ ELT GV F+D + E VD I CTGY +PFL E CG++V + V
Sbjct: 226 VFPDNVVQKPDIKELTKHGVIFKDDTNESVDAIFYCTGYKYSFPFLSEKCGVRVDSNMVT 285
Query: 991 PLYKHTINIEHPTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEV 1050
PL+KH I+IE+PT+ ++G+P + F++FDLQVR + G P K +ML + QE+
Sbjct: 286 PLWKHLISIENPTLALIGLPFYVCAFSMFDLQVRFVLRYWSGKKDFPPKADMLKEEAQEL 345
Query: 1051 LAHLNEGQNPNTFHIIGHRSENFLNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFR 1110
+ EG FH++G + + + + + + +PLPPVL K++ +S +D + +R
Sbjct: 346 ESRKKEGLEKKHFHMMGFKQDRYYDDLANTA-GITPLPPVLTKLHNESSLLFLDDLVHYR 404
Query: 1111 NNKYQIFNDQAYVR 1124
+Y+I +D +++
Sbjct: 405 EKRYKIIDDYNFIQ 418
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383864815|ref|XP_003707873.1| PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 3-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 249 bits (637), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 145/434 (33%), Positives = 214/434 (49%), Gaps = 81/434 (18%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNL 807
G GL A + T +E+ D +GGTW+Y E G D+YGLP+H+SMYK+L+TNL
Sbjct: 9 GSCGLAALRHCTSGAYDVEVVCYEKTDQVGGTWVYREETGLDRYGLPIHTSMYKNLRTNL 68
Query: 808 PKDLME----------------------LCGYG------------------HKGNADKSY 827
PK++M L Y N D+ +
Sbjct: 69 PKEVMGYPDFPVPNSPESYLTRSQMLNFLVSYCDHFKLRPYIRLLHNVELVEPSNGDRKW 128
Query: 828 -IGAKDVLEN----------------YNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGK 870
+ KD+ N Y P +P KG+++ Q +HS DYR P F
Sbjct: 129 TVKVKDLKNNVVLNESFDAVMVCNGHYFEPSFPNLKGQNVYQGKQMHSHDYRVPNTF--- 185
Query: 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSL 930
LD K VV+G+G SG+D+ LDI+ A VFLSHHS
Sbjct: 186 ---------------LD-----KNVVVIGAGPSGMDLALDISGYAKRVFLSHHSRDPIGT 225
Query: 931 CLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQ 990
P+NV KPDV ELT V F+DG+ E VDI+ CTGY +PFL E CG++V + V
Sbjct: 226 VFPSNVTQKPDVRELTEQNVVFKDGTSEPVDIVFYCTGYKYSFPFLSEKCGVRVDSNMVT 285
Query: 991 PLYKHTINIEHPTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEV 1050
PL+KH I+I++ ++ ++G+P + FN+FDLQVR Q G PS+E+ML + +E+
Sbjct: 286 PLWKHLISIKNTSLALVGLPYYVCAFNMFDLQVRFVLQYWSGKRDFPSQEDMLREEAEEL 345
Query: 1051 LAHLNEGQNPNTFHIIGHRSENFLNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFR 1110
EG FH++G + + + + + +PLPPVL K++ +S +D + +R
Sbjct: 346 ENRAKEGLQKRHFHMMGFNQDRYYDDLANTA-GITPLPPVLTKLHNESSTNFLDDLVHYR 404
Query: 1111 NNKYQIFNDQAYVR 1124
KY+I +D +++
Sbjct: 405 EKKYRIIDDYNFIQ 418
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156537946|ref|XP_001608165.1| PREDICTED: flavin-containing monooxygenase FMO GS-OX3-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/438 (32%), Positives = 208/438 (47%), Gaps = 83/438 (18%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNL 807
G GL K+ C +E+ D +GGTW+Y G D +GLP+HSSMY SL+TNL
Sbjct: 9 GSAGLAGIKQCLAQSVDVVC--YEKTDKVGGTWVYVPETGKDAFGLPIHSSMYDSLRTNL 66
Query: 808 PKDLMELCGY----------------------------------------GHKGNADKSY 827
PK++M Y N K
Sbjct: 67 PKEVMGFPDYPIPENSRSYLHRTEILAFLNDYCDHFKLRDKIRFLHNVELAEPTNEKKWK 126
Query: 828 IGAKDVLEN----------------YNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQ 871
+ +D+ +N Y P P KG+++ + LHS DYR P+ FA K+
Sbjct: 127 VRVRDLRQNTTSEEQFDGVMICNGHYFDPSLPALKGRELFKGQQLHSHDYRVPDTFADKR 186
Query: 872 AVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLC 931
VV G+G S G+D+ L+I+ +A V LSHHS+
Sbjct: 187 VVVFGAGPS-----------------------GMDLALEISKKAKRVILSHHSKETILTK 223
Query: 932 LPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQP 991
P+NVV K DV EL FQDGS E VDII CTGY +PFL ESCG++V + V P
Sbjct: 224 FPDNVVQKKDVVELKENSAVFQDGSAEDVDIIFYCTGYKYSFPFLSESCGVRVDSNMVTP 283
Query: 992 LYKHTINIEHPTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVL 1051
L+KH I IE PT+ +G+P + F++FDLQ R + LPS+E MLAD K+E+
Sbjct: 284 LWKHVIGIERPTLAFIGLPFYVCAFSMFDLQARFVLRFWLKQRDLPSREAMLADEKREMD 343
Query: 1052 AHLNE-GQNPNTFHIIGHRSENFLNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFR 1110
N+ G FH++G ++ + + E LPPVL K++ +S + +D + +R
Sbjct: 344 DRFNKRGFTKRQFHMMGPLQGDYYDDLADTAAIER-LPPVLTKLHNESSNRFLDDLVHYR 402
Query: 1111 NNKYQIFNDQAYVRTGPV 1128
++Y+I + + Y++ V
Sbjct: 403 EDRYRIIDSENYIQLDAV 420
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|296427835|gb|ADH16749.1| flavin-dependent monooxygenase FMO3A [Bombyx mori] | Back alignment and taxonomy information |
|---|
Score = 244 bits (624), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/414 (33%), Positives = 207/414 (50%), Gaps = 85/414 (20%)
Query: 770 FEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGHKGNADKSYIG 829
FEQA +GGTW+YTE +G D +GLP+HSSMYKSL+TNLPK++M + ++KSY+
Sbjct: 37 FEQASQLGGTWVYTEKVGYDDFGLPIHSSMYKSLRTNLPKEIMGFPDFP-VPESEKSYLP 95
Query: 830 AKDVLE---------------NYNH----------------------------------- 839
AK++L N+NH
Sbjct: 96 AKEMLSFLQLYADKHQVTDRINFNHHVNLVIPKAGPSGELWDVSFKNLLNGESETREYDY 155
Query: 840 ----------PIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIA 889
P P G Q ++HS DYR PE F+GK+ +VVG+G SG+DI L++
Sbjct: 156 VFVCNGHYNTPFIPNIPGLKEFQGDVMHSHDYRVPEIFSGKRVLVVGAGPSGMDIALEVT 215
Query: 890 TTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTG 949
A V LSHH + P+N+ KPDV L
Sbjct: 216 NV-----------------------AHKVILSHHLKEQPRTVFPDNLTQKPDVKRLDGKK 252
Query: 950 VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGV 1009
V F D S ++VD++ CTGY ++PFLHESC I V + V+PLYKH +NI HPTM +GV
Sbjct: 253 VHFADESEDEVDVVFLCTGYLYNFPFLHESCNISVEDNCVEPLYKHLVNIHHPTMCFIGV 312
Query: 1010 PRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGHR 1069
P + F++FDLQVR + + + G +LPS EEM+A ++E + G H++G
Sbjct: 313 PYYVCAFSMFDLQVRYYIRSINGTFSLPSTEEMIAHWEEEKKDRASRGYTKRQAHMMGPD 372
Query: 1070 SENFLNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFRNNKYQIFNDQAYV 1123
++ S +S + PLPPV ++ DS + ++ +R++ Y++ +D+ +
Sbjct: 373 QASYYMS-LSEESETVPLPPVFTSIHNDSSQKFLDNLTSYRDDVYEVIDDKQFA 425
|
Source: Bombyx mori Species: Bombyx mori Genus: Bombyx Family: Bombycidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|297206721|ref|NP_001171913.1| flavin-dependent monooxygenase FMO3 precursor [Bombyx mori] gi|296427837|gb|ADH16750.1| flavin-dependent monooxygenase FMO3B [Bombyx mori] | Back alignment and taxonomy information |
|---|
Score = 240 bits (613), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 142/413 (34%), Positives = 204/413 (49%), Gaps = 85/413 (20%)
Query: 770 FEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGHKGNADKSYIG 829
FEQA +GGTW+YTE +G D +GLP+HSSMYKSL+TNLPK++M + ++KSY+
Sbjct: 37 FEQASQLGGTWVYTEKVGYDDFGLPIHSSMYKSLRTNLPKEIMGFPDFP-VPESEKSYLP 95
Query: 830 AKDVLE---------------NYNH----------------------------------- 839
AK++L N+NH
Sbjct: 96 AKEMLSFLQLYADKHQVTDRINFNHHVNLVIPKAGPSGELWDVSFKNLLNGESETREYDY 155
Query: 840 ----------PIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIA 889
P P G Q ++HS DYR PE F+GK+ +VVG+G SG+DI L++
Sbjct: 156 VFVCNGHYNTPFIPNIPGLKEFQGDVMHSHDYRVPEIFSGKRVLVVGAGPSGMDIALEVT 215
Query: 890 TTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTG 949
A V LSHH + P+N+ KPDV L
Sbjct: 216 NV-----------------------AHKVILSHHLKEQPRTVFPDNLTQKPDVKRLDGKK 252
Query: 950 VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGV 1009
V F D S ++VD++ CTGY ++PFLHESC I V + V+PLYKH +NI HPTM +GV
Sbjct: 253 VHFADESEDEVDVVFLCTGYLYNFPFLHESCNISVEDNCVEPLYKHLVNIHHPTMCFIGV 312
Query: 1010 PRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGHR 1069
P + F++FDLQVR + + + G +LPS EEM+A ++E + G H++G
Sbjct: 313 PYYVCAFSMFDLQVRYYIRSINGTFSLPSTEEMIAHWEEEKKDRASRGYTKRQAHMMGPD 372
Query: 1070 SENFLNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFRNNKYQIFNDQAY 1122
E + S+ + +S LP VL K+ +S + + +R + Y+I +D Y
Sbjct: 373 QEKYYASLATEAGTKS-LPSVLTKIREESSIRFLHNLKHYRQDVYKIIDDNTY 424
|
Source: Bombyx mori Species: Bombyx mori Genus: Bombyx Family: Bombycidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312371814|gb|EFR19906.1| hypothetical protein AND_21611 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 237 bits (604), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 139/402 (34%), Positives = 211/402 (52%), Gaps = 38/402 (9%)
Query: 756 KRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELC 815
+R+ E G G T +E+ IGGTW+YT+ +G DQ+GLPVH+SMY+ L+TNLPK++M
Sbjct: 17 RRVLELG-GNEVTVYERMGEIGGTWIYTDEVGTDQFGLPVHTSMYRGLRTNLPKEVMGYP 75
Query: 816 GYGHKGNADKSYIGAKDVLE---------------NYNH---PIYPEFKGKDMCQIPILH 857
+ + +SYI + D+L +NH + P G+ ++ L
Sbjct: 76 DFPIPAQS-QSYIASNDILAFLRLYANRFDVERHIKFNHHVVQVQPTGDGRWQIEVENLI 134
Query: 858 SRD---------------YRTPE-PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901
S+ Y TP P A G D K +VVG+G
Sbjct: 135 SKTKLLDSFDFLFVCNGHYHTPSVPAIEGSAQFRGQQLHSHDYRCADHYANKAVLVVGAG 194
Query: 902 QSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDGSYEQVD 961
SG+DI L++A A V LSHH +R+T P N+ +PDVA LT TG RF +G+ D
Sbjct: 195 PSGMDIALELAKSAQRVTLSHHMDRLT-FPFPANLTQQPDVARLTDTGARFVNGAEASFD 253
Query: 962 IILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTLLFNLFDL 1021
++L CTG+ +PFL + CGI+V + +VQPLYKH INI HPTM +G+P + + DL
Sbjct: 254 VVLYCTGFRYSFPFLGDDCGIRVEDNHVQPLYKHCININHPTMAFIGLPYYVCAAQMMDL 313
Query: 1022 QVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGHRSENFLNSIISMM 1081
QVR + G LP++ EMLAD ++E+ A G H++G + + ++
Sbjct: 314 QVRFCLEFFAGRRCLPTRSEMLADMEREMGARWRRGYKRRHAHMMGPDQGQYYDD-LAQT 372
Query: 1082 RDESPLPPVLLKVYFDSYGQLTEDFIGFRNNKYQIFNDQAYV 1123
P+ PV+ K++ +S + +D I FR++ + I +D+ +V
Sbjct: 373 AGIKPIAPVMTKLHNESSQRFVDDLIHFRDDVFAIVDDETFV 414
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340709203|ref|XP_003393201.1| PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 3-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 233 bits (595), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 137/412 (33%), Positives = 212/412 (51%), Gaps = 37/412 (8%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNL 807
G GL A + T +E+ D +GGTW+Y E G D+YGLP+H+SMYK+L+TNL
Sbjct: 9 GSAGLAALRHCTSGTYDTEVICYEKTDQVGGTWIYREETGLDRYGLPIHTSMYKNLRTNL 68
Query: 808 PKDLMELCGYGHKGNADKSYIGAKDVLE-------NYNHPIYPEF--------------- 845
PK++M Y D SY+ +LE ++N Y F
Sbjct: 69 PKEVMGYPDYPVPDTPD-SYLTRTQILEFLNSYCNHFNLRQYIRFLHNVELVEPSTGNRK 127
Query: 846 ---KGKDMCQIPIL-HSRD---------YRTPEPFAGKQAVVVGSGQSGLDITLDIATTG 892
K K++ + +L S D + P Q G D + T
Sbjct: 128 WTIKVKNLEKDTVLTESFDAVMVCNGHYFEPSTPNLKGQKTFQGQQLHSHDYRMPDIFTD 187
Query: 893 KQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRF 952
K +V+G+G SG+D+ L+I+ +A V LSHH + P NVV KPDV E+T V F
Sbjct: 188 KTVLVLGAGPSGMDLALEISRKAKRVILSHHLKDPIGTVFPENVVQKPDVKEVTEHDVLF 247
Query: 953 QDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH 1012
+D S E VD++ CTGY +PFL E CG++V + V PL+KH ++IE+PT+ ++G+P +
Sbjct: 248 KDDSKETVDVLFYCTGYKYSFPFLSEKCGVRVDSNMVTPLWKHLVSIENPTLALVGLPFY 307
Query: 1013 TLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGHRSEN 1072
F++FDLQVR Q G PSK ML + +E EG FH++G + +
Sbjct: 308 VCAFSMFDLQVRFILQYWFGKKDFPSKANMLQEEAEEFENRRKEGLEKKHFHMMGFKQGH 367
Query: 1073 FLNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFRNNKYQIFNDQAYVR 1124
+ + + + +PLPPVL K++ +S + +D + +R ++Y+I +D +++
Sbjct: 368 YYDDLANTA-GITPLPPVLTKLHNESSTRFLDDLVHYRESRYRIIDDYNFIQ 418
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1129 | ||||||
| FB|FBgn0033079 | 429 | Fmo-2 "Flavin-containing monoo | 0.205 | 0.540 | 0.358 | 3.4e-65 | |
| FB|FBgn0034943 | 416 | Fmo-1 "Flavin-containing monoo | 0.205 | 0.557 | 0.330 | 1.6e-51 | |
| ZFIN|ZDB-GENE-031010-24 | 449 | zgc:77439 "zgc:77439" [Danio r | 0.201 | 0.505 | 0.299 | 6.8e-46 | |
| WB|WBGene00007254 | 405 | C01H6.4 [Caenorhabditis elegan | 0.200 | 0.558 | 0.310 | 2.4e-37 | |
| UNIPROTKB|Q8MP06 | 456 | sno1 "Senecionine N-oxygenase" | 0.238 | 0.589 | 0.283 | 6e-37 | |
| TAIR|locus:2201971 | 459 | FMO GS-OX5 "flavin-monooxygena | 0.161 | 0.396 | 0.342 | 1.3e-30 | |
| TAIR|locus:2163193 | 461 | AT5G61290 "AT5G61290" [Arabido | 0.187 | 0.459 | 0.326 | 4.5e-30 | |
| TIGR_CMR|SPO_1551 | 450 | SPO_1551 "flavin-containing mo | 0.193 | 0.484 | 0.281 | 1.4e-29 | |
| TAIR|locus:2203911 | 464 | NOGC1 "AT1G62580" [Arabidopsis | 0.169 | 0.411 | 0.313 | 1.1e-28 | |
| TAIR|locus:2203891 | 462 | FMO GS-OX3 "AT1G62560" [Arabid | 0.158 | 0.387 | 0.294 | 1.2e-28 |
| FB|FBgn0033079 Fmo-2 "Flavin-containing monooxygenase 2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 3.4e-65, Sum P(3) = 3.4e-65
Identities = 84/234 (35%), Positives = 131/234 (55%)
Query: 894 QAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQ 953
+ +++G+G SG+DIT + A VFLSHH + NV KPDV T G F
Sbjct: 193 RVLIIGAGPSGMDITNHVRLAAKQVFLSHHLSTTPNTAFMGNVTQKPDVKRFTKDGAVFT 252
Query: 954 DGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT 1013
DGS E D ++ CTGY +P L G++V++ VQPL+KH INI HPTM +G+P +
Sbjct: 253 DGSTESFDHVMFCTGYKYTFPCLSTDVGVQVIDNFVQPLWKHCININHPTMAFVGLPFNV 312
Query: 1014 LLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEG-QNPNTFHIIGHRSEN 1072
+ ++FD+QVR + G PS+E+M+AD +QE+ G +N H +G R
Sbjct: 313 IPTHIFDMQVRFTLKFFTGQRKFPSREQMIADLEQEIGERWGCGVRNQKKAHQMGERQFV 372
Query: 1073 FLNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFRNNKYQIFNDQAYVRTG 1126
+ N + S+ E+ + PV+ K+ D + + +R+NKY I +D+ +++ G
Sbjct: 373 YYNELASIAGIEN-IKPVIHKLMKDCGKKYIFELDTYRSNKYTILDDENFLKNG 425
|
|
| FB|FBgn0034943 Fmo-1 "Flavin-containing monooxygenase 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 365 (133.5 bits), Expect = 1.6e-51, Sum P(2) = 1.6e-51
Identities = 77/233 (33%), Positives = 122/233 (52%)
Query: 892 GKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVR 951
GK +V+G+G SG+D++ I+ A V +SHH + NV KPDV EL G
Sbjct: 183 GKSVLVIGAGPSGMDLSNIISRTADRVTISHHLTDIGQHSFFENVQQKPDVRELDEKGAF 242
Query: 952 FQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPR 1011
F DGSY++ D + CTGY +PFL GI V + VQ LYK INI +P+M ++G+P
Sbjct: 243 FVDGSYQEFDTVFFCTGYKYAFPFLTVDSGIYVEDNYVQELYKQCINIRNPSMALIGLPF 302
Query: 1012 HTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGHRSE 1071
+ + D+Q R G LPS E+ML DT+ + EG H++G +
Sbjct: 303 YVCAAQMMDIQARFIMSYYNGSNELPSTEDMLKDTRDRMGKLWAEGLRKRHAHMLGPKQI 362
Query: 1072 NFLNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFRNNKYQIFNDQAYVR 1124
++ + S + PV+ K++ +S E+ + FR + + I +D+ +++
Sbjct: 363 DYFTDL-SQTAGVKNIKPVMTKLHNESSKCFNENLLHFREDNFAILDDETFIK 414
|
|
| ZFIN|ZDB-GENE-031010-24 zgc:77439 "zgc:77439" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 282 (104.3 bits), Expect = 6.8e-46, Sum P(3) = 6.8e-46
Identities = 70/234 (29%), Positives = 119/234 (50%)
Query: 892 GKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLC-LPNNVVLKPDVAELTPTG- 949
GK V++G+G SGLDI ++++ + V LSH + +T C LP V P V + G
Sbjct: 200 GKSVVLLGAGLSGLDIAMELSNVNAKVILSHGQKPLT--CPLPPGVQQAPPVTSVLDDGT 257
Query: 950 VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGV 1009
+ F+DG ++ + CTGY+ +PFL E G+KV V PLYK I +P++FI+G+
Sbjct: 258 LEFKDGKKANPEVFMFCTGYNFTFPFLDEKVGVKVQEHLVWPLYKFLIPPAYPSLFIVGI 317
Query: 1010 PRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGHR 1069
R F F +Q + ++ G LPS+E+M D + ++ A G T HI+
Sbjct: 318 CRAICPFPHFHIQSQFVLSVLDGSFRLPSREDMEKDIELDIAARRARGIA--TRHILKLD 375
Query: 1070 SENFL-NSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFRNNKYQIFNDQAY 1122
SE + N ++ + PLP +Y + D + ++ + + + ++ +
Sbjct: 376 SEQWAYNDELAHLGGFKPLPRYWSNLYESNKVFRARDMLNYKTHNFTVLDNMEW 429
|
|
| WB|WBGene00007254 C01H6.4 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 284 (105.0 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 73/235 (31%), Positives = 125/235 (53%)
Query: 891 TGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVV-LKPDVAELTPTG 949
TGK V+VG+G SG+DITL IA A+ V L S++ T LP +V + +V + G
Sbjct: 169 TGKNVVIVGAGPSGIDITLQIAQTANHVTLI--SKKATYPVLPESVQQMATNVKSVDEHG 226
Query: 950 VRFQDGSYEQVDIILCCTGYSNHYPFLHESC-GIKVVNKNVQPLYKHTINIEHPT-MFIL 1007
V +G + D+I+ CTGY +PFL S +K ++ V PLY+H ++++PT +F +
Sbjct: 227 VVTDEGDHVPADVIIVCTGYVFKFPFLDSSLIQLKYNDRMVSPLYEHLCHVDYPTTLFFI 286
Query: 1008 GVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIG 1067
G+P T+ F LF++QV+ L+ G LPS + + + + A L NP +FH+I
Sbjct: 287 GLPLGTITFPLFEVQVKYALSLIAGKGKLPSDDVEIRNFED---ARLQGLLNPASFHVII 343
Query: 1068 HRSENFLNSIISMMR-DESPLPPVLLKVYFDSYGQLTEDFIGFRNNKYQIFNDQA 1121
++ + M +E + K+Y + ++ IG++ +++ D +
Sbjct: 344 EEQWEYMKKLAKMGGFEEWNYMETIKKLYGYIMTERKKNVIGYKMVNFELTTDSS 398
|
|
| UNIPROTKB|Q8MP06 sno1 "Senecionine N-oxygenase" [Tyria jacobaeae (taxid:179666)] | Back alignment and assigned GO terms |
|---|
Score = 297 (109.6 bits), Expect = 6.0e-37, Sum P(2) = 6.0e-37
Identities = 79/279 (28%), Positives = 129/279 (46%)
Query: 851 CQIPILHSRDYRTPE-PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITL 909
C ++ S ++ TP+ P Q G D + G++ +V+G+G SGLD+ +
Sbjct: 166 CDFVVVASGEFSTPKIPHIKGQEEYKGKTMHSHDYKEAESFRGQRVLVIGAGPSGLDVVM 225
Query: 910 DIATRASTVFLSHHSERVTSLC----LPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILC 965
++ S + S H + + P N + KP+V T G F+D + E+ D+++
Sbjct: 226 QLSNITSKLVHSQHILKSWHIFNQPDFPGNFISKPNVKHFTANGAVFEDDTVEEFDMVIY 285
Query: 966 CTGYSNHYPFLHE-SCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTLLFNLFDLQVR 1024
CTG+ ++PFL S GI V PLY+ +NI PTM +G+ + L D Q
Sbjct: 286 CTGFYYNHPFLSTLSSGITATENYVMPLYQQVVNINQPTMTFVGICK-PFFAKLLDQQAH 344
Query: 1025 LFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNT-FHIIGHRSENFLNSIISMMRD 1083
+L GH LPS+++ML + V L E Q T + +G + + ++
Sbjct: 345 YSAKLAAGHFKLPSQDKMLRHWLEHVQM-LREAQFKITDVNSVGPNVDEYFKAL-HKEAG 402
Query: 1084 ESPLPPVLLKVYFDSYGQLTEDFIGFRNNKYQIFNDQAY 1122
LPPV V+ S L ED +R Y+I +D +
Sbjct: 403 VPLLPPVYASVFVFSGKTLLEDLQNYREYDYRIISDTQF 441
|
|
| TAIR|locus:2201971 FMO GS-OX5 "flavin-monooxygenase glucosinolate S-oxygenase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 230 (86.0 bits), Expect = 1.3e-30, Sum P(3) = 1.3e-30
Identities = 64/187 (34%), Positives = 94/187 (50%)
Query: 896 VVVGSGQSGLDITLDIATRASTVFLSHHSE-RVTSLCLP--NNVVLKPDVAELTPTG-VR 951
VV+G+ SG DI+ DI A V ++ S T LP NN+ L + + G +
Sbjct: 209 VVIGNFASGADISRDITGVAKEVHIASRSNPSKTYSKLPGSNNLWLHSMIESVHEDGTIV 268
Query: 952 FQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIE-HPTMFILGVP 1010
FQ+G Q D I+ CTGY H+PFL+ + I V + V PLY+H P + +G+P
Sbjct: 269 FQNGKVVQADTIVHCTGYKYHFPFLNTNGYITVEDNCVGPLYEHVFPPALAPGLSFIGLP 328
Query: 1011 RHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGHRS 1070
TL F +F+LQ + + G +TLPS+E+M+ D GQ H +G
Sbjct: 329 WMTLQFFMFELQSKWVAAALSGRVTLPSEEKMMEDVTAYYAKREAFGQPKRYTHRLGGGQ 388
Query: 1071 ENFLNSI 1077
++LN I
Sbjct: 389 VDYLNWI 395
|
|
| TAIR|locus:2163193 AT5G61290 "AT5G61290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 281 (104.0 bits), Expect = 4.5e-30, Sum P(2) = 4.5e-30
Identities = 76/233 (32%), Positives = 113/233 (48%)
Query: 836 NYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQA 895
+Y++P P KG D+ + LHS YR PEPF + VVVG SG DI++++ K+
Sbjct: 180 HYSYPRLPTIKGMDLWKRKQLHSHIYRVPEPFCDEVVVVVGCSMSGQDISIELVEVAKEV 239
Query: 896 VVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTG-VRFQD 954
+ S +S LDI S V H N+ L P + L G V F+D
Sbjct: 240 HL--STKS-----LDIPPGLSKVIEKHQ-----------NLHLHPQIESLEEDGRVIFED 281
Query: 955 GSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIE-HPTMFILGVPRHT 1013
GS D IL CTGY +PFL +++ + V PL++HT + P + +G+PR
Sbjct: 282 GSCIVADTILYCTGYEYKFPFLESKGRVEIDDNRVGPLFEHTFSPSLSPFLSFVGIPRKL 341
Query: 1014 LLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEG-QNPNTFHI 1065
+ F F+ Q + +L+ G +LPS ++M+ LA +G NT I
Sbjct: 342 IGFPFFESQAKWIAKLLSGKTSLPSSDQMMQSISDFYLAREADGIPKRNTHDI 394
|
|
| TIGR_CMR|SPO_1551 SPO_1551 "flavin-containing monooxygenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 218 (81.8 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
Identities = 64/227 (28%), Positives = 105/227 (46%)
Query: 892 GKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVR 951
GK +VVGS S DI + S + P+N KP + ++ V
Sbjct: 199 GKDILVVGSSYSAEDIGSQCWKYGAKSITSCYRSAPMGFKWPDNWEEKPALVKVDKNTVF 258
Query: 952 FQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNK-NVQPLYKHTINIEHPTMFILGVP 1010
F DG+ +VD I+ CTGY + + FL + +K N+ LYK + + +P MF LG+
Sbjct: 259 FSDGTSREVDAIILCTGYKHFFNFLPDDLRLKTANRLATADLYKGVVYVHNPKMFYLGMQ 318
Query: 1011 RHTLLFNLFDLQVRLFQQLMQGHITLPS--KEEMLAD-TKQEVLAHLNEGQNPNTFHIIG 1067
FN+FD Q + + G I L + KE+MLAD T++E E + + + I
Sbjct: 319 DQWFTFNMFDAQAWWVRDAIMGKIDLSNVTKEQMLADVTERET----REEASDDVKYAIR 374
Query: 1068 HRSENFLNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFRNNKY 1114
++++ ++ +++ S + +F ED + FRNN Y
Sbjct: 375 YQAD-YVKELVAETDYPSFDIDGACEAFFQWKKHKGEDIMAFRNNSY 420
|
|
| TAIR|locus:2203911 NOGC1 "AT1G62580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 221 (82.9 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 63/201 (31%), Positives = 101/201 (50%)
Query: 896 VVVGSGQSGLDITLDIATRASTVFLSHHSERV-TSLCLP--NNVVLKPDVAELTPTG-VR 951
VV+GS SG+DI+ DIA V +S S + T LP +N+ L ++ + G V
Sbjct: 211 VVIGSSVSGVDISRDIANVTKEVHISSRSTKPETYEKLPGYDNLWLHSNIETVREDGSVV 270
Query: 952 FQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIE-HPTMFILGVP 1010
F++G D I+ CTGY ++PFL + V + V PLYKH P + +G+P
Sbjct: 271 FKNGKTVYADTIMHCTGYKYYFPFLDTKGEVTVEDNRVGPLYKHVFPPALSPGLSFIGLP 330
Query: 1011 RHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTF-HIIGHR 1069
+ F +F+LQ + ++ G ++LPS+EEM DTK L L P + H++
Sbjct: 331 WQVIPFPMFELQSKWVAAVLAGRVSLPSQEEM-EDTKMFYLK-LEASCIPKRYTHLMAEL 388
Query: 1070 SENFLNSIISMMRDESPLPPV 1090
F+ + + + D+ P +
Sbjct: 389 DSQFVYN--NWLADQCDYPRI 407
|
|
| TAIR|locus:2203891 FMO GS-OX3 "AT1G62560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 208 (78.3 bits), Expect = 1.2e-28, Sum P(3) = 1.2e-28
Identities = 55/187 (29%), Positives = 95/187 (50%)
Query: 896 VVVGSGQSGLDITLDIATRASTVFLSHHSER---VTSLCLP-NNVVLKPDVAELTPTG-V 950
VV+G+ SG DI+ DIA A V ++ + + +P NN+ + ++ G +
Sbjct: 209 VVIGNFASGADISRDIAKVAKEVHIASRAREPHTYEKISVPQNNLWMHSEIDTTHEDGSI 268
Query: 951 RFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIE-HPTMFILGV 1009
F++G D I+ CTGY ++PFL + +++ K V+PLYKH P + +G+
Sbjct: 269 VFKNGKVIFADSIVYCTGYKYNFPFLETNGYLRIDEKRVEPLYKHVFPPALAPGLAFVGL 328
Query: 1010 PRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTF-HIIGH 1068
P ++F +F++Q + ++ G +TLPS ++M+ D A L+ P H IG
Sbjct: 329 PAMGIVFVMFEIQSKWVAAVLSGRVTLPSTDKMMEDINAWY-ASLDALGIPKRHTHTIGR 387
Query: 1069 RSENFLN 1075
+LN
Sbjct: 388 IQSEYLN 394
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1129 | |||
| PLN02172 | 461 | PLN02172, PLN02172, flavin-containing monooxygenas | 3e-28 | |
| pfam00743 | 532 | pfam00743, FMO-like, Flavin-binding monooxygenase- | 2e-21 | |
| PLN02172 | 461 | PLN02172, PLN02172, flavin-containing monooxygenas | 5e-17 | |
| PLN02172 | 461 | PLN02172, PLN02172, flavin-containing monooxygenas | 3e-15 | |
| COG2072 | 443 | COG2072, TrkA, Predicted flavoprotein involved in | 3e-15 | |
| COG2072 | 443 | COG2072, TrkA, Predicted flavoprotein involved in | 4e-12 | |
| COG2072 | 443 | COG2072, TrkA, Predicted flavoprotein involved in | 2e-11 | |
| pfam00743 | 532 | pfam00743, FMO-like, Flavin-binding monooxygenase- | 2e-10 | |
| PLN02172 | 461 | PLN02172, PLN02172, flavin-containing monooxygenas | 3e-10 | |
| pfam00743 | 532 | pfam00743, FMO-like, Flavin-binding monooxygenase- | 3e-10 | |
| pfam00743 | 532 | pfam00743, FMO-like, Flavin-binding monooxygenase- | 2e-09 | |
| pfam00743 | 532 | pfam00743, FMO-like, Flavin-binding monooxygenase- | 8e-08 | |
| PLN02172 | 461 | PLN02172, PLN02172, flavin-containing monooxygenas | 4e-07 | |
| COG2072 | 443 | COG2072, TrkA, Predicted flavoprotein involved in | 1e-05 | |
| pfam00743 | 532 | pfam00743, FMO-like, Flavin-binding monooxygenase- | 2e-05 | |
| TIGR04046 | 400 | TIGR04046, MSMEG_0569_nitr, flavin-dependent oxido | 6e-05 | |
| PLN02172 | 461 | PLN02172, PLN02172, flavin-containing monooxygenas | 1e-04 | |
| pfam13434 | 335 | pfam13434, K_oxygenase, L-lysine 6-monooxygenase ( | 5e-04 | |
| TIGR04046 | 400 | TIGR04046, MSMEG_0569_nitr, flavin-dependent oxido | 7e-04 | |
| pfam13434 | 335 | pfam13434, K_oxygenase, L-lysine 6-monooxygenase ( | 7e-04 | |
| pfam13434 | 335 | pfam13434, K_oxygenase, L-lysine 6-monooxygenase ( | 7e-04 | |
| TIGR04018 | 316 | TIGR04018, Bthiol_YpdA, putative bacillithiol syst | 0.001 | |
| COG1232 | 444 | COG1232, HemY, Protoporphyrinogen oxidase [Coenzym | 0.002 | |
| pfam13450 | 66 | pfam13450, NAD_binding_8, NAD(P)-binding Rossmann- | 0.002 | |
| pfam00743 | 532 | pfam00743, FMO-like, Flavin-binding monooxygenase- | 0.003 | |
| TIGR03169 | 364 | TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu | 0.004 |
| >gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 3e-28
Identities = 112/402 (27%), Positives = 170/402 (42%), Gaps = 75/402 (18%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLP-----VHSSMYKS 802
G GL A + L G+ T FE+ +GG W+YT D L VHSS+Y+S
Sbjct: 19 GAAGLVAARELRREGH--TVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYES 76
Query: 803 LKTNLPKDLMELCGY-----GHKGNAD-KSYIGAKDVLENYNHPIYPEFKGKDMCQIPIL 856
L+TNLP++ M + + D + Y ++VL Y EFK ++M +
Sbjct: 77 LRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLA-YLQDFAREFKIEEMVRFETE 135
Query: 857 HSRDYRTPEPFAGK-----------------QAVVVGSGQ---------SGLDITLDIAT 890
R EP GK AVVV +G G+ +
Sbjct: 136 VVR----VEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPGIK-----SW 186
Query: 891 TGKQ----------------AVVVGSGQSGLDITLDIATRASTVFL-SHHSERVTSLCLP 933
GKQ VV+G+ SG DI+ DIA A V + S SE T LP
Sbjct: 187 PGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKLP 246
Query: 934 ---NNVVLKPDVAELTPTG-VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNV 989
NN+ + ++ G + F++G D I+ CTGY H+PFL + +++ V
Sbjct: 247 VPQNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRV 306
Query: 990 QPLYKHTINIE-HPTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQ 1048
+PLYKH P + +G+P + F +F++Q + ++ G +TLPS+++M+ D
Sbjct: 307 EPLYKHVFPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDINA 366
Query: 1049 EVLAHLNEGQNPNTFHIIGHRSENFLNSIISMMRDESPLPPV 1090
+ G H +G +LN I +E P V
Sbjct: 367 WYASLEALGIPKRYTHKLGKIQSEYLNWIA----EECGCPLV 404
|
Length = 461 |
| >gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 2e-21
Identities = 71/252 (28%), Positives = 114/252 (45%), Gaps = 60/252 (23%)
Query: 845 FKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQA--------- 895
FKG+ HSRDY+ PE F GK+ +V+G G SG DI ++++ T Q
Sbjct: 165 FKGQ------YFHSRDYKHPEGFQGKRVLVIGLGNSGGDIAVELSRTAAQVFLSTRTGSW 218
Query: 896 VVVGSGQSGLDITLDIATRASTVFLSH--------------------HS----------- 924
V+ G + + TR + FL + H
Sbjct: 219 VLSRVSDWGYPWDMLLTTRFCS-FLRNILPTRISNWLMERQLNKRFNHENYGLSPKNGKL 277
Query: 925 --ERVTSLCLPNNVV-----LKPDVAELTPTGVRFQDGSYEQ-VDIILCCTGYSNHYPFL 976
E + + LPN ++ +KP V E T T F+DG+ E+ +D+++ TGY+ +PFL
Sbjct: 278 AKEPIVNDELPNRILCGAVKVKPSVKEFTETSAIFEDGTVEEDIDVVIFATGYTFSFPFL 337
Query: 977 HESCGIKVVNKNVQPLYKHTI--NIEHPTMFILG-VPRHTLLFNLFDLQVRLFQQLMQGH 1033
ES +KV + LYK+ N+E PT+ I+G + + +LQ R ++ +G
Sbjct: 338 EESL-VKVETNKIS-LYKYVFPPNLEKPTLAIIGLIQPLGSIIPTVELQARWAVRVFKGL 395
Query: 1034 ITLPSKEEMLAD 1045
LPS +M+ +
Sbjct: 396 CKLPSSSKMMEE 407
|
This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532 |
| >gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 5e-17
Identities = 46/122 (37%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
Query: 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLP---- 64
+ H+ VIG GA GL A + L G T FE+ VGG WVYT ++ D L
Sbjct: 10 SQHVAVIGAGAAGLVAARELRR--EGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRS 67
Query: 65 -VHSSMYKSLKTNLPKEIMELSGYHHKGHPD------KSYIAANDVLEYLNDFADNFNLR 117
VHSS+Y+SL+TNLP+E M + D + Y + +VL YL DFA F +
Sbjct: 68 IVHSSVYESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIE 127
Query: 118 NL 119
+
Sbjct: 128 EM 129
|
Length = 461 |
| >gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 3e-15
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 9/138 (6%)
Query: 599 LHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVFL-SHHSERVTSLCLP---N 654
+HS +YR P+PF + VV+G+ SG DI+ DIA A V + S SE T LP N
Sbjct: 191 IHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKLPVPQN 250
Query: 655 NVVLKPDVAELTPTG-VRFQDGSYEQVDIILCCTGYTNHYPFLHESCGIKVVNKNVQPLY 713
N+ + ++ G + F++G D I+ CTGY H+PFL + +++ V+PLY
Sbjct: 251 NLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPLY 310
Query: 714 KHTINIEHPTMFILGVSF 731
KH P G+SF
Sbjct: 311 KHVF----PPALAPGLSF 324
|
Length = 461 |
| >gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 3e-15
Identities = 47/202 (23%), Positives = 67/202 (33%), Gaps = 73/202 (36%)
Query: 748 GPGGLTATKRLTEAG-NGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTN 806
G GL A L +AG F FE+ D++GGTW Y Y L+ +
Sbjct: 17 GQSGLAAAYALKQAGVPDFVI--FEKRDDVGGTWRYN---------------RYPGLRLD 59
Query: 807 LPKDLMELCGYG----------------HKGNADKSYIGAKDVLEN-------------- 836
PK L+ K +K Y + N
Sbjct: 60 SPKWLLGFPFLPFRWDEAFAPFAEIKDYIKDYLEK-YGLRFQIRFNTRVEVADWDEDTKR 118
Query: 837 ------------------------YNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQA 872
+ P P+F G D + ILHS D+ PE GK+
Sbjct: 119 WTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRV 178
Query: 873 VVVGSGQSGLDITLDIATTGKQ 894
+V+G+G S +DI ++A G
Sbjct: 179 LVIGAGASAVDIAPELAEVGAS 200
|
Length = 443 |
| >gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 4e-12
Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 580 YNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVF 639
+ P P+F G D + ILHS D+ PE GK+ +V+G+G S +DI ++A ++V
Sbjct: 143 LSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVT 202
Query: 640 LSHHSERVTSLCLPNNVVLKPDVAEL-----TPTGVRFQDGSYEQVDIILCCTGYTNHYP 694
LS S LP ++ + L P G + G +D +L GY +P
Sbjct: 203 LSQRSP---PHILPKPLLGEEVGGRLALRRALPAGWALRRGRV--LDALLPGAGYLPAFP 257
Query: 695 F------------LHESCGIKVVNKNVQPLYK 714
L V +++ P Y
Sbjct: 258 APDKRVEALLRAALRFLVLDAGVREDLGPDYA 289
|
Length = 443 |
| >gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 2e-11
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 499 YSNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHDISTEATTVS 558
S P PDF G D + I+HS ++ PE GKR +V+G+G S +DI +++ +V+
Sbjct: 143 LSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVT 202
Query: 559 AYLR 562
R
Sbjct: 203 LSQR 206
|
Length = 443 |
| >gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 2e-10
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Query: 303 VVKKPDIAELTPTGVRFQDGSYEQ-VDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYK 361
V KP + E T T F+DG+ E+ +D++++ TGYT+ +PFL ES +KV + LYK
Sbjct: 296 VKVKPSVKEFTETSAIFEDGTVEEDIDVVIFATGYTFSFPFLEESL-VKVETNKIS-LYK 353
Query: 362 HLI--NIEHPSMCIIG 375
++ N+E P++ IIG
Sbjct: 354 YVFPPNLEKPTLAIIG 369
|
This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532 |
| >gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 3e-10
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 267 NGPSGLDITHDISTEATTVFL---SHHSEHVKKLRFP-NNVVKKPDIAELTPTG-VRFQD 321
N SG DI+ DI+ A V + + S+ +KL P NN+ +I G + F++
Sbjct: 212 NFASGADISRDIAKVAKEVHIASRASESDTYEKLPVPQNNLWMHSEIDTAHEDGSIVFKN 271
Query: 322 GSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHL 363
G D I++CTGY Y +PFL + +++ V+PLYKH+
Sbjct: 272 GKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPLYKHV 313
|
Length = 461 |
| >gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 3e-10
Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 15/108 (13%)
Query: 12 IGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTE--QTGRDQYGLPVHSSM 69
+ VIG G GL++ K E G TC FE++D++GG W +TE + GR +S+
Sbjct: 4 VAVIGAGVSGLSSIKCCLEEGLEPTC--FERSDDIGGLWRFTEHVEEGR--------ASI 53
Query: 70 YKSLKTNLPKEIMELSGY-HHKGHPDKSYIAANDVLEYLNDFADNFNL 116
YKS+ TN KE+ S + + +P+ ++ + LEYL FA +F+L
Sbjct: 54 YKSVVTNSSKEMSCFSDFPFPEDYPN--FMHNSKFLEYLRMFAKHFDL 99
|
This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532 |
| >gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-09
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 10/85 (11%)
Query: 652 LPNNVV-----LKPDVAELTPTGVRFQDGSYEQ-VDIILCCTGYTNHYPFLHESCGIKVV 705
LPN ++ +KP V E T T F+DG+ E+ +D+++ TGYT +PFL ES +KV
Sbjct: 287 LPNRILCGAVKVKPSVKEFTETSAIFEDGTVEEDIDVVIFATGYTFSFPFLEESL-VKVE 345
Query: 706 NKNVQPLYKHTI--NIEHPTMFILG 728
+ LYK+ N+E PT+ I+G
Sbjct: 346 TNKIS-LYKYVFPPNLEKPTLAIIG 369
|
This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532 |
| >gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 8e-08
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Query: 588 FKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVFLS 641
FKG+ HSRDY+ PE F GK+ +V+G G SG DI ++++ A+ VFLS
Sbjct: 165 FKGQ------YFHSRDYKHPEGFQGKRVLVIGLGNSGGDIAVELSRTAAQVFLS 212
|
This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532 |
| >gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 4e-07
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 124 KNVQPLYKHLINIE-HPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVTLPSKAEMLAD 182
V+PLYKH+ P + IG+P + F +F++Q ++ ++ G VTLPS+ +M+ D
Sbjct: 304 NRVEPLYKHVFPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMED 363
Query: 183 TEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPV 227
G H +G+ +YLN + +E P V
Sbjct: 364 INAWYASLEALGIPKRYTHKLGKIQSEYLN----WIAEECGCPLV 404
|
Length = 461 |
| >gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 20/105 (19%)
Query: 14 VIGGGAGGLTATKRLTEPG-SGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKS 72
+IG G GL A L + G F FE+ D+VGGTW Y Y
Sbjct: 13 IIGAGQSGLAAAYALKQAGVPDFVI--FEKRDDVGGTWRYN---------------RYPG 55
Query: 73 LKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLR 117
L+ + PK ++ + D+++ ++ +Y+ D+ + + LR
Sbjct: 56 LRLDSPKWLLGFPFLPFRW--DEAFAPFAEIKDYIKDYLEKYGLR 98
|
Length = 443 |
| >gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 507 FKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHDISTEATTV 557
FKG+ HS +Y+ PE F GKR +V+G G SG DI ++S A V
Sbjct: 165 FKGQ------YFHSRDYKHPEGFQGKRVLVIGLGNSGGDIAVELSRTAAQV 209
|
This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532 |
| >gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase, MSMEG_0569 family | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 6e-05
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 837 YNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQA- 895
Y+ P+ P + + LHS +YR P+ +VVGSGQSG I D+ G++
Sbjct: 129 YHVPVIPPLAERLPADVLQLHSSEYRNPDQLPDGAVLVVGSGQSGCQIAEDLHLAGRKVH 188
Query: 896 VVVGS 900
+ VGS
Sbjct: 189 LAVGS 193
|
Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor. Length = 400 |
| >gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 493 IISSRNYSNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHDIST 552
++ + +Y+ P G +HSH YR P+PF + VV+G+ SG DI+ DI+
Sbjct: 166 VVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAK 225
Query: 553 EATTV 557
A V
Sbjct: 226 VAKEV 230
|
Length = 461 |
| >gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring) | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 5e-04
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 598 ILHSRDY--RTPEPFAGKQAVVVGSGQSGLDITLDIATR 634
+ HS +Y R P AGK+ VVG GQS +I LD+ R
Sbjct: 169 VFHSSEYLLRKPRLLAGKRITVVGGGQSAAEIFLDLLRR 207
|
This is family of Rossmann fold oxidoreductases that catalyzes the NADPH-dependent hydroxylation of lysine at the N6 position, EC:1.14.13.59. Length = 335 |
| >gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase, MSMEG_0569 family | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 7e-04
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 580 YNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVF 639
Y+ P+ P + + LHS +YR P+ +VVGSGQSG I D+ V
Sbjct: 129 YHVPVIPPLAERLPADVLQLHSSEYRNPDQLPDGAVLVVGSGQSGCQIAEDLHLAGRKVH 188
Query: 640 LS 641
L+
Sbjct: 189 LA 190
|
Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor. Length = 400 |
| >gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring) | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 7e-04
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 855 ILHSRDY--RTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQA 895
+ HS +Y R P AGK+ VVG GQS +I LD+
Sbjct: 169 VFHSSEYLLRKPRLLAGKRITVVGGGQSAAEIFLDLLRRQPGY 211
|
This is family of Rossmann fold oxidoreductases that catalyzes the NADPH-dependent hydroxylation of lysine at the N6 position, EC:1.14.13.59. Length = 335 |
| >gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring) | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 7e-04
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 517 IMHSHEY--RTPEPFAGKRAVVVGSGPSGLDITHDI 550
+ HS EY R P AGKR VVG G S +I D+
Sbjct: 169 VFHSSEYLLRKPRLLAGKRITVVGGGQSAAEIFLDL 204
|
This is family of Rossmann fold oxidoreductases that catalyzes the NADPH-dependent hydroxylation of lysine at the N6 position, EC:1.14.13.59. Length = 335 |
| >gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 42/179 (23%), Positives = 68/179 (37%), Gaps = 44/179 (24%)
Query: 580 YNHPIYPEFKGKDMCQIP-ILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTV 638
Y+ P G+D+ P + H Y+ P+ G++ VVVG S +D L+
Sbjct: 124 YDIPNLLNVPGEDL---PKVSHY--YKEAHPYFGQKVVVVGGSNSAVDAALE-------- 170
Query: 639 FLSHHSERVTSLCLPNNVV------LKPD-----------------VAELTPTGVRFQDG 675
L VT + + V ++PD V E+T V +
Sbjct: 171 -LYRKGAEVTMVHRGDEVSSSVKYWVRPDIENRIKEGSIKAYFNSRVKEITEDSVTLETP 229
Query: 676 SYEQVDI----ILCCTGYTNHYPFLHESCGIKVVNKNVQPLY-KHTINIEHPTMFILGV 729
E I + TGY + FL ES G+++ P+Y T+ P +++ GV
Sbjct: 230 DGEVHTIPNDFVFALTGYRPDFEFL-ESLGVELDEDTGIPVYNPETMETNVPGLYLAGV 287
|
Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316 |
| >gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTG 57
I +IGGG GL+A RL + G T FE D VGG + T +
Sbjct: 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG-LLRTVKID 47
|
Length = 444 |
| >gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.002
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVH 66
++G G GL A L + G E+ D +GG Y+E+ ++ H
Sbjct: 1 IVGAGLSGLVAAYLLAK--RGKDVLVLEKRDRIGG-NAYSERDPGYRHDYGAH 50
|
Length = 66 |
| >gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 8/65 (12%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNL 807
G GL++ K E G TC FE++D+IGG W +TEH+ + G +S+YKS+ TN
Sbjct: 10 GVSGLSSIKCCLEEGLEPTC--FERSDDIGGLWRFTEHV---EEG---RASIYKSVVTNS 61
Query: 808 PKDLM 812
K++
Sbjct: 62 SKEMS 66
|
This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532 |
| >gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.004
Identities = 28/113 (24%), Positives = 39/113 (34%), Gaps = 17/113 (15%)
Query: 873 VVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCL 932
VVG G +G++I L + + GL + + AS L +V L L
Sbjct: 149 AVVGGGAAGVEIALALRRRLPKR--------GLRGQVTLIAGAS--LLPGFPAKVRRLVL 198
Query: 933 PN------NVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHES 979
V V + DG D IL TG + P+L ES
Sbjct: 199 RLLARRGIEVHEGAPVTRGPDGALILADGRTLPADAILWATG-ARAPPWLAES 250
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1129 | |||
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 100.0 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 100.0 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 100.0 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 100.0 | |
| KOG1399|consensus | 448 | 100.0 | ||
| KOG1399|consensus | 448 | 100.0 | ||
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 99.94 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 99.93 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 99.92 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 99.91 | |
| PLN02507 | 499 | glutathione reductase | 99.89 | |
| KOG0405|consensus | 478 | 99.89 | ||
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 99.89 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 99.89 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 99.88 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 99.88 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 99.87 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 99.87 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.87 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 99.87 | |
| PRK06116 | 450 | glutathione reductase; Validated | 99.87 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 99.87 | |
| PRK06370 | 463 | mercuric reductase; Validated | 99.86 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.86 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 99.86 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 99.86 | |
| PLN02546 | 558 | glutathione reductase | 99.86 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 99.85 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 99.85 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 99.85 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 99.85 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 99.85 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 99.85 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 99.85 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 99.85 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 99.85 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.85 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 99.84 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 99.84 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 99.84 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 99.84 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 99.84 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 99.84 | |
| PLN02507 | 499 | glutathione reductase | 99.83 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 99.83 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 99.83 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 99.83 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 99.83 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 99.82 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 99.82 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 99.82 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 99.82 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 99.82 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 99.82 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 99.82 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 99.82 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 99.82 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 99.81 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 99.81 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 99.81 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.81 | |
| KOG0405|consensus | 478 | 99.81 | ||
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 99.81 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 99.81 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 99.81 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 99.81 | |
| PRK06116 | 450 | glutathione reductase; Validated | 99.81 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 99.8 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 99.8 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 99.8 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 99.79 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 99.79 | |
| PRK06370 | 463 | mercuric reductase; Validated | 99.79 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 99.79 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 99.79 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.79 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 99.79 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 99.78 | |
| KOG1335|consensus | 506 | 99.78 | ||
| PLN02546 | 558 | glutathione reductase | 99.78 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 99.78 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.78 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 99.78 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 99.78 | |
| KOG1336|consensus | 478 | 99.78 | ||
| KOG0404|consensus | 322 | 99.78 | ||
| PRK07846 | 451 | mycothione reductase; Reviewed | 99.77 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 99.77 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 99.77 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 99.77 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 99.77 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.76 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 99.76 | |
| KOG4716|consensus | 503 | 99.76 | ||
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 99.76 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 99.76 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 99.76 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 99.76 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 99.76 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 99.75 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 99.75 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 99.74 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 99.74 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 99.74 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 99.73 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 99.73 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 99.73 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 99.73 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 99.73 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 99.72 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.72 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 99.72 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 99.72 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 99.72 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 99.72 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 99.71 | |
| KOG2495|consensus | 491 | 99.71 | ||
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 99.71 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 99.71 | |
| KOG1335|consensus | 506 | 99.71 | ||
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 99.7 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 99.7 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 99.7 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 99.7 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 99.7 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 99.69 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 99.69 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 99.69 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 99.69 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 99.68 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 99.68 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 99.68 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 99.67 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.66 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 99.66 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 99.65 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 99.64 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 99.64 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 99.63 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 99.63 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 99.62 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.61 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.59 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 99.59 | |
| KOG4716|consensus | 503 | 99.57 | ||
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.57 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 99.56 | |
| KOG1336|consensus | 478 | 99.55 | ||
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 99.55 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 99.53 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 99.51 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.5 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 99.49 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 99.48 | |
| KOG0399|consensus | 2142 | 99.47 | ||
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.47 | |
| KOG2495|consensus | 491 | 99.46 | ||
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 99.45 | |
| KOG0404|consensus | 322 | 99.44 | ||
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.43 | |
| KOG1800|consensus | 468 | 99.4 | ||
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.37 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.36 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.35 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 99.33 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 99.28 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 99.27 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 99.27 | |
| KOG0399|consensus | 2142 | 99.17 | ||
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.02 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 98.99 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 98.95 | |
| KOG1346|consensus | 659 | 98.93 | ||
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 98.9 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 98.88 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 98.82 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 98.81 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 98.69 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.67 | |
| KOG1800|consensus | 468 | 98.67 | ||
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.65 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 98.64 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.53 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 98.48 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.43 | |
| KOG2755|consensus | 334 | 98.43 | ||
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.42 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.38 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 98.35 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 98.32 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.31 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 98.29 | |
| KOG1346|consensus | 659 | 98.28 | ||
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.25 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 98.25 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 98.23 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 98.23 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 98.2 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 98.2 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 98.19 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 98.19 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.18 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 98.17 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 98.16 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 98.16 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 98.14 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 98.12 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.12 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.1 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 98.1 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.1 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 98.1 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 98.09 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.09 | |
| KOG0029|consensus | 501 | 98.07 | ||
| PRK07045 | 388 | putative monooxygenase; Reviewed | 98.07 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 98.06 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.06 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 98.04 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.03 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 98.03 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 98.01 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 98.0 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 97.99 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 97.99 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 97.99 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 97.98 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 97.95 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 97.94 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 97.94 | |
| PLN02463 | 447 | lycopene beta cyclase | 97.94 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 97.93 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 97.92 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 97.91 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 97.9 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 97.89 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 97.89 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 97.88 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 97.87 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 97.87 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 97.86 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 97.86 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.86 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 97.85 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.85 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 97.85 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 97.84 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.83 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 97.82 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 97.81 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 97.8 | |
| KOG2755|consensus | 334 | 97.78 | ||
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 97.77 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 97.77 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 97.77 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 97.76 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 97.75 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 97.75 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 97.75 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 97.72 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.71 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 97.7 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 97.69 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 97.69 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 97.67 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 97.66 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 97.66 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 97.66 | |
| PLN02568 | 539 | polyamine oxidase | 97.65 | |
| PRK07121 | 492 | hypothetical protein; Validated | 97.63 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.62 | |
| KOG0685|consensus | 498 | 97.62 | ||
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 97.61 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 97.61 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.6 | |
| PLN02268 | 435 | probable polyamine oxidase | 97.6 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 97.59 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 97.59 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 97.59 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 97.58 | |
| KOG2415|consensus | 621 | 97.57 | ||
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 97.57 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 97.55 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 97.55 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 97.53 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 97.53 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 97.52 | |
| KOG3851|consensus | 446 | 97.5 | ||
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.49 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.49 | |
| PRK05868 | 372 | hypothetical protein; Validated | 97.48 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 97.46 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 97.45 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 97.45 | |
| PLN02985 | 514 | squalene monooxygenase | 97.44 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.44 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 97.42 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 97.42 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 97.42 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 97.4 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 97.39 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.38 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 97.35 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.34 | |
| PLN02676 | 487 | polyamine oxidase | 97.34 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 97.33 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.33 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 97.32 | |
| KOG1276|consensus | 491 | 97.32 | ||
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 97.31 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 97.31 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 97.3 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 97.3 | |
| KOG2404|consensus | 477 | 97.28 | ||
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 97.27 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 97.22 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 97.17 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 97.17 | |
| PLN02487 | 569 | zeta-carotene desaturase | 97.16 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 97.16 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 97.14 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 97.1 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 96.93 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 96.91 | |
| PLN02976 | 1713 | amine oxidase | 96.91 | |
| PLN02612 | 567 | phytoene desaturase | 96.89 | |
| KOG2820|consensus | 399 | 96.89 | ||
| PLN03000 | 881 | amine oxidase | 96.86 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 96.82 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 96.82 | |
| KOG0029|consensus | 501 | 96.81 | ||
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 96.74 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 96.7 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 96.67 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 96.66 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 96.65 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 96.65 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 96.65 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 96.64 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 96.63 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.58 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 96.58 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 96.58 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 96.58 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.57 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 96.57 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 96.52 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 96.47 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 96.47 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.44 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.43 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.42 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 96.35 | |
| KOG2614|consensus | 420 | 96.32 | ||
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 96.32 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 96.3 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 96.29 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 96.28 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 96.25 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 96.25 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 96.24 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 96.22 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 96.18 | |
| KOG2960|consensus | 328 | 96.17 | ||
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 96.16 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 96.08 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 96.04 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.0 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.0 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 95.98 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 95.96 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 95.96 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 95.88 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 95.85 | |
| PLN02268 | 435 | probable polyamine oxidase | 95.84 | |
| PLN02463 | 447 | lycopene beta cyclase | 95.82 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 95.81 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 95.78 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 95.78 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 95.77 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 95.75 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 95.75 | |
| PRK05868 | 372 | hypothetical protein; Validated | 95.74 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 95.73 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 95.73 | |
| PLN02815 | 594 | L-aspartate oxidase | 95.71 | |
| KOG0685|consensus | 498 | 95.69 | ||
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 95.65 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 95.63 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 95.6 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 95.59 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 95.51 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 95.49 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 95.49 | |
| PLN02676 | 487 | polyamine oxidase | 95.47 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 95.46 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 95.45 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 95.45 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 95.43 | |
| KOG1298|consensus | 509 | 95.36 | ||
| KOG3851|consensus | 446 | 95.35 | ||
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 95.35 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 95.32 | |
| TIGR03862 | 376 | flavo_PP4765 uncharacterized flavoprotein, PP_4765 | 95.29 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 95.28 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 95.27 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 95.26 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 95.24 | |
| COG3573 | 552 | Predicted oxidoreductase [General function predict | 95.23 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 95.16 | |
| KOG4254|consensus | 561 | 95.11 | ||
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 95.1 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 95.09 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 95.08 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 94.93 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 94.9 | |
| KOG1276|consensus | 491 | 94.9 | ||
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 94.84 | |
| KOG2665|consensus | 453 | 94.83 | ||
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 94.81 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 94.81 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.7 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 94.58 | |
| KOG2311|consensus | 679 | 94.54 | ||
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 94.49 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 94.43 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 94.41 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 94.36 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 94.31 | |
| PLN02568 | 539 | polyamine oxidase | 94.23 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 94.16 | |
| KOG2415|consensus | 621 | 94.16 | ||
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 94.11 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 94.05 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 93.9 | |
| KOG2960|consensus | 328 | 93.77 | ||
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 93.76 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 93.7 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 93.69 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 93.66 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 93.64 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 93.63 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 93.63 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 93.62 | |
| PLN02661 | 357 | Putative thiazole synthesis | 93.6 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 93.6 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 93.55 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 93.37 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 93.35 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 93.34 | |
| PF06100 | 500 | Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross | 93.34 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 93.26 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 93.09 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 93.08 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 93.06 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 93.06 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 93.02 | |
| KOG2853|consensus | 509 | 92.93 | ||
| PLN02487 | 569 | zeta-carotene desaturase | 92.9 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 92.76 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 92.72 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 92.7 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 92.68 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 92.65 | |
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 92.65 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 92.63 | |
| PLN02976 | 1713 | amine oxidase | 92.59 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 92.57 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 92.51 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 92.44 | |
| PLN03000 | 881 | amine oxidase | 92.42 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 92.41 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 92.37 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 92.32 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 92.29 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 92.25 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 92.23 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 92.18 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 92.17 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 92.16 | |
| KOG2852|consensus | 380 | 92.1 | ||
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 92.06 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 91.95 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 91.89 | |
| PRK07121 | 492 | hypothetical protein; Validated | 91.72 | |
| PLN02612 | 567 | phytoene desaturase | 91.66 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 91.61 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 91.6 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 91.59 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 91.58 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 91.58 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 91.5 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 91.48 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 91.45 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 91.38 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 91.35 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 91.34 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 91.11 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 91.04 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 91.02 |
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-56 Score=523.53 Aligned_cols=371 Identities=31% Similarity=0.512 Sum_probs=227.4
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCCC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGHK 820 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~~ 820 (1129)
.|+|||||++||++|+.|+++| ++++||||++++||+|+++.++.. -.+++|+++.+|++++++.|+|||+|
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g--~~~~~fE~~~~iGG~W~~~~~~~~------g~~~~y~sl~~n~sk~~~~fsdfp~p 74 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEG--LEVTCFEKSDDIGGLWRYTENPED------GRSSVYDSLHTNTSKEMMAFSDFPFP 74 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT---EEEEEESSSSSSGGGCHSTTCCC------SEGGGSTT-B-SS-GGGSCCTTS-HC
T ss_pred EEEEECccHHHHHHHHHHHHCC--CCCeEEecCCCCCccCeeCCcCCC------CccccccceEEeeCchHhcCCCcCCC
Confidence 4789999999999999999999 999999999999999998765432 14679999999999999999999999
Q ss_pred CCCCCCCCChhhhhh-----------------------------------------------------------ccCCCC
Q psy12350 821 GNADKSYIGAKDVLE-----------------------------------------------------------NYNHPI 841 (1129)
Q Consensus 821 ~~~~~~~~~~~~v~~-----------------------------------------------------------~~~~P~ 841 (1129)
++ .+.|+++.++++ +++.|+
T Consensus 75 ~~-~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~ 153 (531)
T PF00743_consen 75 ED-YPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPN 153 (531)
T ss_dssp CC-CSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCES
T ss_pred CC-CCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCC
Confidence 87 889999998887 788999
Q ss_pred CCC--CCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCC-Cc--------cchhh
Q psy12350 842 YPE--FKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQS-GL--------DITLD 910 (1129)
Q Consensus 842 ~P~--i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~-~~--------~~~~~ 910 (1129)
+|. +||++.|+|+++||++|++++.++||||+|||+|+||+|||.+|++.+++|++..|... .+ +.+..
T Consensus 154 ~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~ 233 (531)
T PF00743_consen 154 IPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMV 233 (531)
T ss_dssp B-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-------------------
T ss_pred CChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccccc
Confidence 995 99999999999999999999999999999999999999999999999999999866432 11 11100
Q ss_pred ------------hhccccEEEE----ecC-------C---------cccccc-----CCCCCeEEcCCeeEEeCCcEEec
Q psy12350 911 ------------IATRASTVFL----SHH-------S---------ERVTSL-----CLPNNVVLKPDVAELTPTGVRFQ 953 (1129)
Q Consensus 911 ------------~~~~~~~~~~----~~~-------~---------~~~~~~-----~~~~~V~~~~~i~~v~~~~V~~~ 953 (1129)
+.....+.+. ... + .+.+++ ...++|+++++|+++++++|+|+
T Consensus 234 ~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~~~v~F~ 313 (531)
T PF00743_consen 234 FSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTENSVIFE 313 (531)
T ss_dssp -----------------------------------------------------------------EE-EEEE-SSEEEET
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000000000 000 0 011111 22357788888999999999999
Q ss_pred CCcEe-eccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCC--CCcEEEcccccc-chhHHHHHHHHHHHHH
Q psy12350 954 DGSYE-QVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEH--PTMFILGVPRHT-LLFNLFDLQVRLFQQL 1029 (1129)
Q Consensus 954 dG~~~-~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~--p~l~~iG~~~~~-~~~~~~e~qa~~~a~~ 1029 (1129)
||+++ ++|+||+||||+.++|||++++ +...++. ..||+++|+++. |+|+|||.+... +.++++|+||||+|++
T Consensus 314 DGs~~e~vD~II~~TGY~~~fpFL~~~~-~~~~~~~-~~LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw~a~v 391 (531)
T PF00743_consen 314 DGSTEEDVDVIIFCTGYKFSFPFLDESL-IKVDDNR-VRLYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARWAARV 391 (531)
T ss_dssp TSEEEEE-SEEEE---EE---TTB-TTT-T-S-SSS-SSEETTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccc-ccccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence 99986 7999999999999999999754 3444443 479999999864 899999998754 6789999999999999
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeccCCcHHHHHHHHHhcCCCCCCcHHHHHHHHchhhhhhhcCCCC
Q psy12350 1030 MQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGHRSENFLNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGF 1109 (1129)
Q Consensus 1030 l~g~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~d~l~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~y 1109 (1129)
|+|+.+||++++|+++++++.+++.++ +.....|.+..++..|+|+||+++|+. |...+.++++++.++..+|+|+
T Consensus 392 ~sG~~~LPs~~~M~~~i~~~~~~~~~~-~~~~~~~~~~~d~~~y~deLA~~iG~~---P~~~~l~~~dp~l~~~~~~gp~ 467 (531)
T PF00743_consen 392 FSGRVKLPSKEEMMEEIEEEQEWRAKR-FGFSPRHTIQVDYIDYMDELAREIGCK---PNFWKLFLTDPKLARKLYFGPC 467 (531)
T ss_dssp HTTSS----HHHHHHHHHHHHHHHHT---SHHHHHHHHHHHHHHHHTTS-------------------------------
T ss_pred ccccccccccccccccccccccccccc-ccccccccccccccccccccccccccc---cccccccccccccccccccccc
Confidence 999999999999999999887766554 222234556678999999999999999 7777888899999999999999
Q ss_pred CCCceeecCCCceeeec
Q psy12350 1110 RNNKYQIFNDQAYVRTG 1126 (1129)
Q Consensus 1110 ~~~~Yr~~~~~~~~~~~ 1126 (1129)
.|++||+.||++|+++-
T Consensus 468 ~p~~YRL~Gpg~w~gar 484 (531)
T PF00743_consen 468 TPYQYRLFGPGKWPGAR 484 (531)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 99999999999999863
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-50 Score=466.27 Aligned_cols=365 Identities=26% Similarity=0.451 Sum_probs=307.5
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCC-----CccccccCcccccccccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGL-----PVHSSMYKSLKTNLPKDLME 813 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~-----p~~~~~y~~~~~~~~~~~~~ 813 (1129)
.-.++|||||++||++|++|+++| ++++||||++.+||+|.++.....+..++ ..++++|+++++|++++.|.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G--~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~ 87 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREG--HTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMG 87 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhcc
Confidence 457899999999999999999999 99999999999999999875433222222 24578999999999999999
Q ss_pred ccCCCCCCC------CCCCCCChhhhhh----------------------------------------------------
Q psy12350 814 LCGYGHKGN------ADKSYIGAKDVLE---------------------------------------------------- 835 (1129)
Q Consensus 814 ~~~~~~~~~------~~~~~~~~~~v~~---------------------------------------------------- 835 (1129)
|+|||+++. +.+.|+++.++++
T Consensus 88 f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIv 167 (461)
T PLN02172 88 YRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVV 167 (461)
T ss_pred CCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEE
Confidence 999998653 2356888887766
Q ss_pred -cc--CCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhh
Q psy12350 836 -NY--NHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIA 912 (1129)
Q Consensus 836 -~~--~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~ 912 (1129)
+| +.|++|++||+++|.|+++|++.|+++++++||+|+|||+|.||+|+|.+|++.+++|+++.+......
T Consensus 168 AtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~------ 241 (461)
T PLN02172 168 CNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDT------ 241 (461)
T ss_pred eccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccc------
Confidence 34 789999999999999999999999999999999999999999999999999999999999987431100
Q ss_pred ccccEEEEecCCccccccCCCCCeEEcCCeeEEeC-CcEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccc
Q psy12350 913 TRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTP-TGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQP 991 (1129)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~i~~v~~-~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ 991 (1129)
. .. +. .-..++.+...|.++.+ ++|+|.||+.+++|.||+||||++++|||+....+..+++.+.+
T Consensus 242 ------~-~~-----~~-~~~~~v~~~~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~~~~v~~ 308 (461)
T PLN02172 242 ------Y-EK-----LP-VPQNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEP 308 (461)
T ss_pred ------c-cc-----Cc-CCCCceEECCcccceecCCeEEECCCCCccCCEEEECCcCCccccccCcccceeeCCCcchh
Confidence 0 00 00 00124555555666544 44999999999999999999999999999864446677777778
Q ss_pred cccceeecCC-CCcEEEccccccchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeccCCc
Q psy12350 992 LYKHTINIEH-PTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGHRS 1070 (1129)
Q Consensus 992 ly~~~~~~~~-p~l~~iG~~~~~~~~~~~e~qa~~~a~~l~g~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1129)
||+++|++.. |+|+|||.+..+++|+++|+||+|+|++|+|+..||+.++|+++++++.+.+.+.+.+.++.|.+...+
T Consensus 309 Ly~~~f~~~~~p~LafiG~~~~~~~f~~~E~Qa~~~a~v~sG~~~LPs~~~m~~~~~~~~~~~~~~g~~~r~~h~~~~~~ 388 (461)
T PLN02172 309 LYKHVFPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDINAWYASLEALGIPKRYTHKLGKIQ 388 (461)
T ss_pred hHHhhcCCCCCCcEEEEeccccccCchhHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHHHHhcCCCCceeEEcCccH
Confidence 9999999975 999999999878899999999999999999999999999999999998887766777778889887789
Q ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHchhhhhhhcCCCCCCC----ceeecCCCceeee
Q psy12350 1071 ENFLNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFRNN----KYQIFNDQAYVRT 1125 (1129)
Q Consensus 1071 ~~y~d~l~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~----~Yr~~~~~~~~~~ 1125 (1129)
..|+|+|++++|++ ++++|+++++......+.++...||+. +|++...+.|.+.
T Consensus 389 ~~y~~~la~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 446 (461)
T PLN02172 389 SEYLNWIAEECGCP-LVEHWRYQEVDRGYQRLVSQPETYRDEWDDDDLMEEAYEDFARK 446 (461)
T ss_pred HHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhCHHhhccccccccceeecccccceE
Confidence 99999999999998 888999999999999999999999998 7877777766543
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-51 Score=480.18 Aligned_cols=363 Identities=29% Similarity=0.452 Sum_probs=246.6
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||||||||+|||+|||+|++ .|+++++|||++++||+|.|..++.. ..+++|+++++|+|+++|.|+||||
T Consensus 2 krVaVIGaG~sGL~a~k~l~e--~g~~~~~fE~~~~iGG~W~~~~~~~~------g~~~~y~sl~~n~sk~~~~fsdfp~ 73 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLE--EGLEVTCFEKSDDIGGLWRYTENPED------GRSSVYDSLHTNTSKEMMAFSDFPF 73 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHH--TT-EEEEEESSSSSSGGGCHSTTCCC------SEGGGSTT-B-SS-GGGSCCTTS-H
T ss_pred CEEEEECccHHHHHHHHHHHH--CCCCCeEEecCCCCCccCeeCCcCCC------CccccccceEEeeCchHhcCCCcCC
Confidence 799999999999999999999 56999999999999999998665331 2478999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeecccccc--CCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLIN--IEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
|+. .+.|++++++.+||++||++|+|.++|+|||+|++|++.... .+.|+++.. .+++..+..|| +||||
T Consensus 74 p~~-~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~--~~g~~~~~~fD-----~Vvva 145 (531)
T PF00743_consen 74 PED-YPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTE--NDGKEETEEFD-----AVVVA 145 (531)
T ss_dssp CCC-CSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEET--TTTEEEEEEEC-----EEEEE
T ss_pred CCC-CCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEee--cCCeEEEEEeC-----eEEEc
Confidence 976 567999999999999999999999999999999999874321 234666543 34444566899 99999
Q ss_pred cccCCCCCccc--cccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccc
Q psy12350 168 QGHVTLPSKAE--MLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE 245 (1129)
Q Consensus 168 tG~~~~p~~p~--i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 245 (1129)
||+++.|++|. +||. +.|+|+ -+|++. |+.++.|.
T Consensus 146 tG~~~~P~~P~~~~~G~--e~F~G~-------------i~HS~~---------------------------yr~~~~f~- 182 (531)
T PF00743_consen 146 TGHFSKPNIPEPSFPGL--EKFKGE-------------IIHSKD---------------------------YRDPEPFK- 182 (531)
T ss_dssp E-SSSCESB-----CTG--GGHCSE-------------EEEGGG-----------------------------TGGGGT-
T ss_pred CCCcCCCCCChhhhhhh--hcCCee-------------EEcccc---------------------------CcChhhcC-
Confidence 99999999995 7774 345553 234433 37777764
Q ss_pred ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcc-cc---------------------------
Q psy12350 246 FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVK-KL--------------------------- 297 (1129)
Q Consensus 246 ~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~-~~--------------------------- 297 (1129)
+|+|+| ||+|.||+|+|.+|+..+++|+++.|+.... +.
T Consensus 183 --gKrVlV-----------VG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~ 249 (531)
T PF00743_consen 183 --GKRVLV-----------VGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPES 249 (531)
T ss_dssp --TSEEEE-----------ESSSHHHHHHHHHHTTTSCCEEEECC-----------------------------------
T ss_pred --CCEEEE-----------EeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccccccccccccccccccccc
Confidence 566655 7999999999999999999999999877210 00
Q ss_pred -----------------------------------------cCCCCeEEcCCceEEcCCceEEcCCCEe-ecCEEEEccc
Q psy12350 298 -----------------------------------------RFPNNVVKKPDIAELTPTGVRFQDGSYE-QVDIILYCTG 335 (1129)
Q Consensus 298 -----------------------------------------~~~~~i~~~~~v~~~~~~~v~~~dg~~~-~~D~VI~atG 335 (1129)
...++|..++.|+++++++|+|+||+++ ++|.||+|||
T Consensus 250 ~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~~~v~F~DGs~~e~vD~II~~TG 329 (531)
T PF00743_consen 250 LSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTENSVIFEDGSTEEDVDVIIFCTG 329 (531)
T ss_dssp -------------------------------------------------EE-EEEE-SSEEEETTSEEEEE-SEEEE---
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0011456678899999999999999975 7999999999
Q ss_pred ccccCCCCCCCCCeEeecCcccccccccccCC--CCCeEEeccccc----ccccccccceeeehhhcccccccccccccc
Q psy12350 336 YTYRYPFLHESCGIKVVNKNVQPLYKHLINIE--HPSMCIIGYTYR----YPFLHESCGIKVVNKNVQPLYKHLINIEHP 409 (1129)
Q Consensus 336 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~p~l~~~G~~~~----~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 409 (1129)
|+.++|||+++. +.+.+ +...||+++|+++ +|+|+|+|+++. +|+++ +|| +|++..++|+++|
T Consensus 330 Y~~~fpFL~~~~-~~~~~-~~~~LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~E--lQA----rw~a~v~sG~~~L--- 398 (531)
T PF00743_consen 330 YKFSFPFLDESL-IKVDD-NRVRLYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFE--LQA----RWAARVFSGRVKL--- 398 (531)
T ss_dssp EE---TTB-TTT-T-S-S-SSSSEETTTEETETTSTTEEESS-SBSSS-HHHHHH--HHH----HHHHHHHTTSS-----
T ss_pred cccccccccccc-ccccc-cccccccccccccccccccccccccccccccccccc--ccc----ccccccccccccc---
Confidence 999999999764 44433 3467999999874 699999999863 24455 885 5566677788888
Q ss_pred cceecCCCcccchhhhhcccccccccccccCCCCCcCcCCCChHHHHHHHHhcccceec
Q psy12350 410 SMCIIGIPVESCGIKVVNKNVQPLYKHLINIDHPSMCIIGIPGDTVVFYMFDLQDKIRP 468 (1129)
Q Consensus 410 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~y~~~~~~~i~~ 468 (1129)
|++++|++|+.++....-+. |.. ........++..|+.+++..+..
T Consensus 399 -------Ps~~~M~~~i~~~~~~~~~~-----~~~-~~~~~~~~d~~~y~deLA~~iG~ 444 (531)
T PF00743_consen 399 -------PSKEEMMEEIEEEQEWRAKR-----FGF-SPRHTIQVDYIDYMDELAREIGC 444 (531)
T ss_dssp ---------HHHHHHHHHHHHHHHHT-------SH-HHHHHHHHHHHHHHHTTS-----
T ss_pred -------cccccccccccccccccccc-----ccc-ccccccccccccccccccccccc
Confidence 99999999998875432211 110 11123456777888888766554
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=454.95 Aligned_cols=346 Identities=28% Similarity=0.461 Sum_probs=272.1
Q ss_pred CCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCC-----CccCcccccccccCCcc
Q psy12350 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGL-----PVHSSMYKSLKTNLPKE 80 (1129)
Q Consensus 6 ~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~-----~~~~~~y~~l~~~~~~~ 80 (1129)
+...++|||||||||||+||++|++ .|++|+||||++.+||+|.|++....+..++ ..++++|++|++|+|++
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~--~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~ 84 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR--EGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRE 84 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh--cCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHh
Confidence 3456899999999999999999999 5689999999999999999977654333333 24688999999999999
Q ss_pred ccccCCCCCCCC------CCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceE
Q psy12350 81 IMELSGYHHKGH------PDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFY 154 (1129)
Q Consensus 81 ~~~~~d~~~~~~------~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1129)
+|+|+|||++.. ..+.||++.++.+||++|++++++..+|+|+++|++|++. .+.|.++..+. .+.....
T Consensus 85 ~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~---~~~w~V~~~~~-~~~~~~~ 160 (461)
T PLN02172 85 CMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPV---DGKWRVQSKNS-GGFSKDE 160 (461)
T ss_pred hccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeec---CCeEEEEEEcC-CCceEEE
Confidence 999999998752 2357999999999999999999998889999999999873 25677776542 1122345
Q ss_pred EecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccc
Q psy12350 155 LFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFE 234 (1129)
Q Consensus 155 ~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 234 (1129)
.|| +||||||+++.|++|++||. +.++|+ .+|++.
T Consensus 161 ~~d-----~VIvAtG~~~~P~~P~ipG~--~~f~G~-------------~iHs~~------------------------- 195 (461)
T PLN02172 161 IFD-----AVVVCNGHYTEPNVAHIPGI--KSWPGK-------------QIHSHN------------------------- 195 (461)
T ss_pred EcC-----EEEEeccCCCCCcCCCCCCc--ccCCce-------------EEEecc-------------------------
Confidence 789 99999999999999999884 233332 233333
Q ss_pred cccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc---cCC-CCeEEcCCce
Q psy12350 235 SFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL---RFP-NNVVKKPDIA 310 (1129)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~---~~~-~~i~~~~~v~ 310 (1129)
++.++.+ ++++++| ||+|.||+|+|..|+..+++|++++|+...... ..+ .++...+.|.
T Consensus 196 --yr~~~~~---~gk~VvV-----------VG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~~~~~~~~~~~v~~~~~I~ 259 (461)
T PLN02172 196 --YRVPDPF---KNEVVVV-----------IGNFASGADISRDIAKVAKEVHIASRASESDTYEKLPVPQNNLWMHSEID 259 (461)
T ss_pred --cCCcccc---CCCEEEE-----------ECCCcCHHHHHHHHHHhCCeEEEEEeeccccccccCcCCCCceEECCccc
Confidence 2555555 3555555 799999999999999999999999997644211 111 3567777787
Q ss_pred EEcCC-ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCC-CCCeEEeccccc-cccccccc
Q psy12350 311 ELTPT-GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIE-HPSMCIIGYTYR-YPFLHESC 387 (1129)
Q Consensus 311 ~~~~~-~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~p~l~~~G~~~~-~~~~~~~~ 387 (1129)
++.++ +|+|+||+++++|.||+||||++++|||+....+.++++.+.+||+++|++. +|+|+|+|++.. .++...+.
T Consensus 260 ~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~~f~~~E~ 339 (461)
T PLN02172 260 TAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGIQFVMFEI 339 (461)
T ss_pred ceecCCeEEECCCCCccCCEEEECCcCCccccccCcccceeeCCCcchhhHHhhcCCCCCCcEEEEeccccccCchhHHH
Confidence 77554 4999999999999999999999999999865557777777889999999997 699999999852 33333338
Q ss_pred ceeeehhhcccccccccccccccceecCCCcccchhhhhcccccc
Q psy12350 388 GIKVVNKNVQPLYKHLINIEHPSMCIIGIPVESCGIKVVNKNVQP 432 (1129)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 432 (1129)
|| +|+++.++|++.| |++++|++++..+...
T Consensus 340 Qa----~~~a~v~sG~~~L----------Ps~~~m~~~~~~~~~~ 370 (461)
T PLN02172 340 QS----KWVAAVLSGRVTL----------PSEDKMMEDINAWYAS 370 (461)
T ss_pred HH----HHHHHHHcCCCCC----------cCHHHHHHHHHHHHHH
Confidence 85 5555666788888 9999999999777643
|
|
| >KOG1399|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-44 Score=404.68 Aligned_cols=337 Identities=29% Similarity=0.488 Sum_probs=268.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|||||||||||++|+.|++ .|++++||||.+++||+|.|.+..+. .++++|++|++|+|++.|+|+||
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~--~g~~v~vfEr~~~iGGlW~y~~~~~~------~~ss~Y~~l~tn~pKe~~~~~df 76 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLR--EGHEVVVFERTDDIGGLWKYTENVEV------VHSSVYKSLRTNLPKEMMGYSDF 76 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHH--CCCCceEEEecCCccceEeecCcccc------cccchhhhhhccCChhhhcCCCC
Confidence 35899999999999999999999 56999999999999999999776552 36789999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
|+++.....||++.++++||++||++|+|.+.|+|+++|..++... .+.|.+..++.... .....|| +|+||
T Consensus 77 pf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~--~gkW~V~~~~~~~~-~~~~ifd-----~VvVc 148 (448)
T KOG1399|consen 77 PFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSID--KGKWRVTTKDNGTQ-IEEEIFD-----AVVVC 148 (448)
T ss_pred CCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeecc--CCceeEEEecCCcc-eeEEEee-----EEEEc
Confidence 9998755567999999999999999999999999999998887632 15798888764433 4567899 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|||+..|++|.+||...+.|+|+ -+|++.| +.++.|.
T Consensus 149 tGh~~~P~~P~~~g~~~~~f~G~-------------~iHS~~Y---------------------------k~~e~f~--- 185 (448)
T KOG1399|consen 149 TGHYVEPRIPQIPGPGIESFKGK-------------IIHSHDY---------------------------KSPEKFR--- 185 (448)
T ss_pred ccCcCCCCCCcCCCCchhhcCCc-------------ceehhhc---------------------------cCccccc---
Confidence 99997799999987545556554 3445444 7777775
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEcccc--CCc-ccccCCCCeEEcCCceEEcCCceEE-cCCC
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHS--EHV-KKLRFPNNVVKKPDIAELTPTGVRF-QDGS 323 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~--~~~-~~~~~~~~i~~~~~v~~~~~~~v~~-~dg~ 323 (1129)
+|+|+| ||+|+||+|+|.+++..+++|+++.++ ... .......++...+.|.++++++.+| .++.
T Consensus 186 ~k~VlV-----------IG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~~~~~~~ 254 (448)
T KOG1399|consen 186 DKVVLV-----------VGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPPEILGENLWQVPSIKSFTEDGSVFEKGGP 254 (448)
T ss_pred CceEEE-----------ECCCccHHHHHHHHHHhccCcceeeecccccccccceeecceEEccccccccCcceEEEcCce
Confidence 455555 799999999999999999999999761 111 1112234555555599999998555 5556
Q ss_pred EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCC-CCCeEEecccc---cccccccccceeeehhhcccc
Q psy12350 324 YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIE-HPSMCIIGYTY---RYPFLHESCGIKVVNKNVQPL 399 (1129)
Q Consensus 324 ~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~p~l~~~G~~~---~~~~~~~~~~~~~~a~~~~~~ 399 (1129)
...+|.||+||||.+.+|||....++...++.+.++|+++|++. .|++.++|++. .+|.++ .|+ +|..+.
T Consensus 255 ~~~~D~ii~ctgy~y~fPfl~~~~~~~~~~~~~~pl~k~~~p~~~~~~~~~~~l~~~~~~f~~~e--~Q~----r~~~~v 328 (448)
T KOG1399|consen 255 VERVDRIIFCTGYKYKFPFLETLGLGTVRDNIVGPLYKKVFPPALAPGLSLAGLPLIQIPFPMFE--LQA----RWVAAV 328 (448)
T ss_pred eEEeeeEEEeeeeEeecceeccCCceeeccCcccchheeccchhhCccccccccCeeeEeeccee--hhh----hhhHhh
Confidence 67999999999999999999976655667778899999999865 56777777664 245555 775 566667
Q ss_pred cccccccccccceecCCCcccchhhhhcccc
Q psy12350 400 YKHLINIEHPSMCIIGIPVESCGIKVVNKNV 430 (1129)
Q Consensus 400 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 430 (1129)
+.|..++ |++++|+.|+..+.
T Consensus 329 ~~G~~~l----------ps~~~m~~d~~~~~ 349 (448)
T KOG1399|consen 329 LEGRLKL----------PSKDQMLEDGQEKY 349 (448)
T ss_pred hcCCCcC----------CCHHHhhhhhhhhh
Confidence 7777777 99999999886665
|
|
| >KOG1399|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=370.78 Aligned_cols=349 Identities=30% Similarity=0.472 Sum_probs=279.4
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYG 818 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~ 818 (1129)
.-.++|||||++||++|+.|+++| ++++||||.+++||+|.+..... ..++++|+++++|++++.|+|+|||
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g--~~v~vfEr~~~iGGlW~y~~~~~------~~~ss~Y~~l~tn~pKe~~~~~dfp 77 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREG--HEVVVFERTDDIGGLWKYTENVE------VVHSSVYKSLRTNLPKEMMGYSDFP 77 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCC--CCceEEEecCCccceEeecCccc------ccccchhhhhhccCChhhhcCCCCC
Confidence 456799999999999999999999 99999999999999999876544 2377899999999999999999999
Q ss_pred CCCCCCCCCCChhhhhh--------------------------------------------------------ccCCCCC
Q psy12350 819 HKGNADKSYIGAKDVLE--------------------------------------------------------NYNHPIY 842 (1129)
Q Consensus 819 ~~~~~~~~~~~~~~v~~--------------------------------------------------------~~~~P~~ 842 (1129)
++++....|+++.++++ ++..|++
T Consensus 78 f~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~ 157 (448)
T KOG1399|consen 78 FPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRI 157 (448)
T ss_pred CcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCC
Confidence 99973444577777776 4445999
Q ss_pred CCCCC--CCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEE
Q psy12350 843 PEFKG--KDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFL 920 (1129)
Q Consensus 843 P~i~G--~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~ 920 (1129)
|.++| ++.|+|+++||++|+.++.+++|+|+|||+|+||+|||.+++..+++|++..+ . ...
T Consensus 158 P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~---------------~~~ 221 (448)
T KOG1399|consen 158 PQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-S---------------PKV 221 (448)
T ss_pred CcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-c---------------ccc
Confidence 99999 77999999999999999999999999999999999999999999988887642 0 000
Q ss_pred ecCCccccccCCCCCeEEcCCeeEEeCCcEE-ecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeec
Q psy12350 921 SHHSERVTSLCLPNNVVLKPDVAELTPTGVR-FQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINI 999 (1129)
Q Consensus 921 ~~~~~~~~~~~~~~~V~~~~~i~~v~~~~V~-~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~ 999 (1129)
.. .....+..++..++.|+.+++++.. +.+|....+|.||+||||...+|||+........++...++|++++++
T Consensus 222 ~~----~~~~~~~~~~~~~~~i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~~~~~~~~~~~pl~k~~~p~ 297 (448)
T KOG1399|consen 222 HV----EPPEILGENLWQVPSIKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFLETLGLGTVRDNIVGPLYKKVFPP 297 (448)
T ss_pred cc----cccceeecceEEccccccccCcceEEEcCceeEEeeeEEEeeeeEeecceeccCCceeeccCcccchheeccch
Confidence 00 0001112245555568999999855 456666799999999999999999986443345555656899999987
Q ss_pred CC-CCcEEEccccccchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhcCCC-CCCceeccC-CcHHHHHH
Q psy12350 1000 EH-PTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQN-PNTFHIIGH-RSENFLNS 1076 (1129)
Q Consensus 1000 ~~-p~l~~iG~~~~~~~~~~~e~qa~~~a~~l~g~~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~y~d~ 1076 (1129)
.. |.+.++|.+.....|+.+|.|++|++++++|+.++|+.++|..+...........+.. .++.|.+.. ....|...
T Consensus 298 ~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~~~lps~~~m~~d~~~~~~~~~~~~~~~~~~t~~~~~~~l~~y~~~ 377 (448)
T KOG1399|consen 298 ALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGRLKLPSKDQMLEDGQEKYEKLDAVGLATGRHTHVPDYDELAEYINW 377 (448)
T ss_pred hhCccccccccCeeeEeecceehhhhhhHhhhcCCCcCCCHHHhhhhhhhhhhhhhhhcccccccccccchHHHHHHhhh
Confidence 74 6778888877668899999999999999999999999999999988876555555444 455554332 46778888
Q ss_pred HHHhcCCCCCCcHHHHHHHHchhhhhhhcCCCCCCCceeecCCCceeee
Q psy12350 1077 IISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFRNNKYQIFNDQAYVRT 1125 (1129)
Q Consensus 1077 l~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~Yr~~~~~~~~~~ 1125 (1129)
+++..|++ .++.|+. +.-++++++++.|++.+++.|+..
T Consensus 378 ~~~~~g~~-~~~~~~~---------~~~~~g~~~~y~~~~~~~~~w~g~ 416 (448)
T KOG1399|consen 378 FADLCGFP-KTEPWLA---------KEGWKGPCGLYAYGLTGPDKWDGA 416 (448)
T ss_pred hhhhcCCC-CcchHHh---------hhhccCccceeEeecccCcccccH
Confidence 88888887 5555443 335778999999999999999875
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-26 Score=264.92 Aligned_cols=204 Identities=22% Similarity=0.383 Sum_probs=162.9
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSG 86 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d 86 (1129)
....+|+|||||+|||++|.+|+++|... ++||||++.+||+|.+ .+|+++++++++..++|+.
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~-~~i~Ek~~~~Gg~W~~---------------~ry~~l~~~~p~~~~~~~~ 69 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPD-FVIFEKRDDVGGTWRY---------------NRYPGLRLDSPKWLLGFPF 69 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCc-EEEEEccCCcCCcchh---------------ccCCceEECCchheeccCC
Confidence 34689999999999999999999965432 8999999999999995 5899999999999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
+|++ +...++...++.+|+.+|++++++..+|++++.|+.++... ....|+|++...... . +.+| +||+
T Consensus 70 ~p~~--~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~-~~~~w~V~~~~~~~~--~-~~a~-----~vV~ 138 (443)
T COG2072 70 LPFR--WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDE-DTKRWTVTTSDGGTG--E-LTAD-----FVVV 138 (443)
T ss_pred CccC--CcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecC-CCCeEEEEEcCCCee--e-EecC-----EEEE
Confidence 9987 34567788889999999999999999999999998876532 223566655432221 2 5678 9999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
|||+++.|++|+|+|.. .|.| +-.|++.| .+++++.
T Consensus 139 ATG~~~~P~iP~~~G~~--~f~g-------------~~~HS~~~---------------------------~~~~~~~-- 174 (443)
T COG2072 139 ATGHLSEPYIPDFAGLD--EFKG-------------RILHSADW---------------------------PNPEDLR-- 174 (443)
T ss_pred eecCCCCCCCCCCCCcc--CCCc-------------eEEchhcC---------------------------CCccccC--
Confidence 99999999999998732 3333 23344433 5555553
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCC
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEH 293 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~ 293 (1129)
+|+|+| ||+|.||+|+|.+|++.|++||++.|++.
T Consensus 175 -GKrV~V-----------IG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 175 -GKRVLV-----------IGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred -CCeEEE-----------ECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 666665 79999999999999999999999999884
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=261.19 Aligned_cols=277 Identities=23% Similarity=0.373 Sum_probs=189.2
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcc-eEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFT-CTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCG 816 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~-v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~ 816 (1129)
...+++|||||++||++|+.|+++| .+ ++||||++.+||+|++++ |++++.+.++....|+.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g--~~~~~i~Ek~~~~Gg~W~~~r---------------y~~l~~~~p~~~~~~~~ 69 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAG--VPDFVIFEKRDDVGGTWRYNR---------------YPGLRLDSPKWLLGFPF 69 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcC--CCcEEEEEccCCcCCcchhcc---------------CCceEECCchheeccCC
Confidence 3457899999999999999999999 66 999999999999999764 55566677777778888
Q ss_pred CCCC-CCCCCCCCC-hhhhhh---------------------------------------------------ccCCCCCC
Q psy12350 817 YGHK-GNADKSYIG-AKDVLE---------------------------------------------------NYNHPIYP 843 (1129)
Q Consensus 817 ~~~~-~~~~~~~~~-~~~v~~---------------------------------------------------~~~~P~~P 843 (1129)
+|++ ....+.+.. ...+.. +++.|++|
T Consensus 70 ~p~~~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP 149 (443)
T COG2072 70 LPFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIP 149 (443)
T ss_pred CccCCcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCC
Confidence 7775 111222221 111111 67899999
Q ss_pred CCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCc-cch---------hhhhc
Q psy12350 844 EFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGL-DIT---------LDIAT 913 (1129)
Q Consensus 844 ~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~-~~~---------~~~~~ 913 (1129)
+|+|.++|+|+++||++|+++++++||+|+|||+|+||+|+|.+|++.|++||++.|++... +.. ..+..
T Consensus 150 ~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~~~~~~~~~~~~~~~ 229 (443)
T COG2072 150 DFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALRR 229 (443)
T ss_pred CCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCceecccccccchHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999998865321 100 00000
Q ss_pred -c-----------c----------------------------cEEEEecCCccccc------------------cCCCCC
Q psy12350 914 -R-----------A----------------------------STVFLSHHSERVTS------------------LCLPNN 935 (1129)
Q Consensus 914 -~-----------~----------------------------~~~~~~~~~~~~~~------------------~~~~~~ 935 (1129)
. . .+..........+. .....+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~ 309 (443)
T COG2072 230 ALPAGWALRRGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLGPDYAPGDGRLVPDGDLFEAGASGD 309 (443)
T ss_pred hCccceehhhhhhhhhhhhhhcccccCCCchHHHHHhhhhhhhccccccChHhhcCCCCCccccccccccchhhhhhhcc
Confidence 0 0 00000000000000 000113
Q ss_pred eEEcCC-eeEEeCCcEEecCCcEeeccEEEEccCccC-cCCCCCCCCC-eeecCCcccccccceeecCCCCcEEEccccc
Q psy12350 936 VVLKPD-VAELTPTGVRFQDGSYEQVDIILCCTGYSN-HYPFLHESCG-IKVVNKNVQPLYKHTINIEHPTMFILGVPRH 1012 (1129)
Q Consensus 936 V~~~~~-i~~v~~~~V~~~dG~~~~~D~VI~aTG~~~-~~~fl~~~~g-~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~ 1012 (1129)
+.+++. +..+.+.++...+|.+++.|.++.+||+.. .+..+....+ ...+. .....|+.....+.||+++++.+..
T Consensus 310 ~~~~~~~i~~~~~~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~pn~~~~~~~~~ 388 (443)
T COG2072 310 VEVVTEIIDRFTEGGILLDSGREEEADVIITATGLDANDLSGAAGGYGGDPWDK-DAPLAYKGLALSGGPNLFLIGGPTK 388 (443)
T ss_pred cceeeccccccCCcceecCCCccccceEEEecCCCchhheeeeccccccccccc-cccceeccccccCCCceEEecCccC
Confidence 344444 455555667777777799999999999988 4443332221 12121 2224677777889999999998865
Q ss_pred cc----hhHHHHHHHHHHHHHHcC
Q psy12350 1013 TL----LFNLFDLQVRLFQQLMQG 1032 (1129)
Q Consensus 1013 ~~----~~~~~e~qa~~~a~~l~g 1032 (1129)
.. .....+.+.++++..+.-
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~ 412 (443)
T COG2072 389 ASGGLKAALRAELRITLLADAIAH 412 (443)
T ss_pred CcccchhHHhhhhhhhHHHHHHHh
Confidence 42 346777788887777653
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=248.73 Aligned_cols=306 Identities=14% Similarity=0.184 Sum_probs=199.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+||||||||..||.++++ .|.+|+++|+...+||+|.+ .||. |.+...+........+..-. +|
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~--~G~kvalvE~~~~lGGtCln---~GCI----PsK~Ll~~a~~~~~~~~~~~--~~ 71 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQ--LGLKVALVEKGERLGGTCLN---VGCI----PSKALLHAAEVIEEARHAAK--EY 71 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCCEEEEeecCCcCceEEe---eCcc----ccHHHHHHHHHHHHHhhccc--cc
Confidence 35899999999999999999999 55669999998789999994 5552 44544444322211111100 12
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEe-ceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLV-NKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
.+... ..-.+..++.+..++..+.......-.+ ...|+-+...+...+..++.+... +.....++ ++||
T Consensus 72 Gi~~~--~~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~---~~~~~~a~-----~iiI 141 (454)
T COG1249 72 GISAE--VPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGE---DKETITAD-----NIII 141 (454)
T ss_pred ceecC--CCCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCC---CceEEEeC-----EEEE
Confidence 11111 0123555666665554333321111111 125555555444455566666543 34556677 9999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||| ++|..|++|+.....+ ..+.+.+...
T Consensus 142 ATG--S~p~~~~~~~~~~~~~-------------------------------------------------~~s~~~l~~~ 170 (454)
T COG1249 142 ATG--SRPRIPPGPGIDGARI-------------------------------------------------LDSSDALFLL 170 (454)
T ss_pred cCC--CCCcCCCCCCCCCCeE-------------------------------------------------Eechhhcccc
Confidence 999 9999998766221110 0112222212
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCceEE
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAEL 312 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~ 312 (1129)
..++.++| ||||++|+|+|..++++|.+||+++|.+++++..+++ ++..++.++++
T Consensus 171 ~lP~~lvI----------iGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~ 240 (454)
T COG1249 171 ELPKSLVI----------VGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAV 240 (454)
T ss_pred cCCCEEEE----------ECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEE
Confidence 23444444 8999999999999999999999999999999865543 35567777777
Q ss_pred cCC----ceEEcCCC--EeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccc----ccc
Q psy12350 313 TPT----GVRFQDGS--YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY----RYP 381 (1129)
Q Consensus 313 ~~~----~v~~~dg~--~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~----~~~ 381 (1129)
+.+ .+.+++|+ ++++|.|++|+|-+|+.+-|. +..++.+++++.+... +.+-.+.|++|.+|... .++
T Consensus 241 ~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah 319 (454)
T COG1249 241 EKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAH 319 (454)
T ss_pred EecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC-CccccCCCCEEEeeccCCCcccHh
Confidence 643 26777877 689999999999999998432 3567888776544444 33335689999999883 334
Q ss_pred ccccccceeeehhhccc
Q psy12350 382 FLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 382 ~~~~~~~~~~~a~~~~~ 398 (1129)
.+. .|++.+|.++.+
T Consensus 320 ~A~--~eg~iaa~~i~g 334 (454)
T COG1249 320 VAM--AEGRIAAENIAG 334 (454)
T ss_pred HHH--HHHHHHHHHHhC
Confidence 455 888888888887
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-24 Score=239.12 Aligned_cols=293 Identities=18% Similarity=0.244 Sum_probs=198.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
+++|||||||++||.+|+.|.+...+.+|+++||++. .++...+|+.....++.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~-----------------hl~~plL~eva~g~l~~--------- 56 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY-----------------HLFTPLLYEVATGTLSE--------- 56 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc-----------------cccchhhhhhhcCCCCh---------
Confidence 4799999999999999999998522588999999773 11222333332222222
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEe-ceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLV-NKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
+++.--++..+++.+ ++.| .-+|+.|+. +.++|.+.+ .....|| +||||
T Consensus 57 ------------~~i~~p~~~~~~~~~---~v~~~~~~V~~ID~-----~~k~V~~~~-----~~~i~YD-----~LVva 106 (405)
T COG1252 57 ------------SEIAIPLRALLRKSG---NVQFVQGEVTDIDR-----DAKKVTLAD-----LGEISYD-----YLVVA 106 (405)
T ss_pred ------------hheeccHHHHhcccC---ceEEEEEEEEEEcc-----cCCEEEeCC-----Ccccccc-----EEEEe
Confidence 122222333344332 2333 346888876 556665543 3457899 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
+| +.++.+.+||..+..+.- .+.++|..++.+.... |+++....++ ..
T Consensus 107 lG--s~~~~fgi~G~~E~a~~l----ks~edA~~ir~~l~~~-----------------------fe~a~~~~~~---~~ 154 (405)
T COG1252 107 LG--SETNYFGIPGAAEYAFGL----KTLEDALRLRRHLLEA-----------------------FEKASQEEDD---RA 154 (405)
T ss_pred cC--CcCCcCCCCCHHHhCCCC----CCHHHHHHHHHHHHHH-----------------------HHHhhccccc---cc
Confidence 99 999999999865544332 2444554444433211 1211111111 01
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhccccc-------------EEEEccccCCcccccCCC-------------
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEAT-------------TVFLSHHSEHVKKLRFPN------------- 301 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~-------------~V~lv~r~~~~~~~~~~~------------- 301 (1129)
..+++| ||||++|+|+|.+|++... +|+|+++.+.+++...+.
T Consensus 155 ~lti~I-----------vGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~G 223 (405)
T COG1252 155 LLTIVI-----------VGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLG 223 (405)
T ss_pred eeEEEE-----------ECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCC
Confidence 123333 8999999999999887654 899999999998854432
Q ss_pred -CeEEcCCceEEcCCceEEcCCCE-eecCEEEEcccccccCCCCC--------CCCCeEeecCcccccccccccCCCCCe
Q psy12350 302 -NVVKKPDIAELTPTGVRFQDGSY-EQVDIILYCTGYTYRYPFLH--------ESCGIKVVNKNVQPLYKHLINIEHPSM 371 (1129)
Q Consensus 302 -~i~~~~~v~~~~~~~v~~~dg~~-~~~D~VI~atG~~~~~~~l~--------~~~~~~~~~~~~~~l~~~~~~~~~p~l 371 (1129)
+|.+++.|+++++++|++++|.+ +++|+||||+|.+.+ |++. ...++.++++...+.|.++|..+|...
T Consensus 224 V~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~ 302 (405)
T COG1252 224 VEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAA 302 (405)
T ss_pred CEEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEecccc
Confidence 67889999999999999999985 999999999999987 3322 225677777777788888888887433
Q ss_pred EEec--ccccccccccccceeeehhhcccccccc
Q psy12350 372 CIIG--YTYRYPFLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 372 ~~~G--~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
+.-. .|.++|.+. |||+++|.++.+.+.|+
T Consensus 303 ~~~~~p~P~tAQ~A~--Qqg~~~a~ni~~~l~g~ 334 (405)
T COG1252 303 VIDPRPVPPTAQAAH--QQGEYAAKNIKARLKGK 334 (405)
T ss_pred CCCCCCCCChhHHHH--HHHHHHHHHHHHHhcCC
Confidence 3332 467788888 99999999999999884
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-23 Score=246.23 Aligned_cols=305 Identities=18% Similarity=0.157 Sum_probs=181.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcc---------cCCcCceEecCCCCCCCCCCCCccCcccccccccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQ---------TDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPK 79 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~---------~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~ 79 (1129)
.+||+||||||||++||+++++ .|.+|+|+|+ .+.+||+|.+ .||. |.+...|..-.....+
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~--~G~~V~liE~~~~~~~~~~~~~~GGtc~n---~Gci----PsK~l~~~a~~~~~~~ 95 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSAN--FGAKVGICELPFHPISSESIGGVGGTCVI---RGCV----PKKILVYGATFGGEFE 95 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCcccccccCCCccceeec---cCch----hHHHHHHHHHHHHHHH
Confidence 4789999999999999999999 6799999996 3679999984 4542 3333333321111111
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCC-cceeEeceeeeeeccccccCCCCceEEeccccCccceEEecc
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNL-RNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDL 158 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~-~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 158 (1129)
.. ..|.+... ...-.+..++.++++...+++.- ......+..|+-+.......+..++.+.. ..++...+.||
T Consensus 96 ~~---~~~G~~~~-~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~-~~g~~~~~~~d- 169 (499)
T PLN02507 96 DA---KNYGWEIN-EKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQ-LDGTKLRYTAK- 169 (499)
T ss_pred HH---HhcCcccC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEe-CCCcEEEEEcC-
Confidence 11 11111100 01123555656555444443310 01111122232222211112333444432 22222346788
Q ss_pred eeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccc
Q psy12350 159 QVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFAR 238 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 238 (1129)
+|||||| +.|..|++||... .. .+.. + .
T Consensus 170 ----~LIIATG--s~p~~p~ipG~~~-~~------------------~~~~--------------------------~-~ 197 (499)
T PLN02507 170 ----HILIATG--SRAQRPNIPGKEL-AI------------------TSDE--------------------------A-L 197 (499)
T ss_pred ----EEEEecC--CCCCCCCCCCccc-ee------------------chHH--------------------------h-h
Confidence 9999999 8888888876210 00 0000 0 0
Q ss_pred cccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCeE
Q psy12350 239 CSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNVV 304 (1129)
Q Consensus 239 ~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i~ 304 (1129)
..+.+ .++++| ||||++|+|+|..++..|++|+|++|.+.+++...+ -++.
T Consensus 198 ~l~~~----~k~vvV-----------IGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~ 262 (499)
T PLN02507 198 SLEEL----PKRAVV-----------LGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLH 262 (499)
T ss_pred hhhhc----CCeEEE-----------ECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEE
Confidence 00011 233333 899999999999999999999999998866543221 1456
Q ss_pred EcCCceEEcC--Cc--eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEeccccc
Q psy12350 305 KKPDIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYR 379 (1129)
Q Consensus 305 ~~~~v~~~~~--~~--v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~ 379 (1129)
.+..|+++++ ++ +.+.+|+++++|.||+|+|++++..+|. +..++..+++..+....++- ++.|++|.+|....
T Consensus 263 ~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~-Ts~p~IyAiGDv~~ 341 (499)
T PLN02507 263 PRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSR-TNIPSIWAIGDVTN 341 (499)
T ss_pred eCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCc-CCCCCEEEeeEcCC
Confidence 6777888863 23 5667888899999999999999998753 34566666544333333322 58899999998753
Q ss_pred ----ccccccccceeeehhhccc
Q psy12350 380 ----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 380 ----~~~~~~~~~~~~~a~~~~~ 398 (1129)
++.+. .|++.+|.++.+
T Consensus 342 ~~~l~~~A~--~qg~~aa~ni~g 362 (499)
T PLN02507 342 RINLTPVAL--MEGTCFAKTVFG 362 (499)
T ss_pred CCccHHHHH--HHHHHHHHHHcC
Confidence 34455 788888887653
|
|
| >KOG0405|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=208.28 Aligned_cols=302 Identities=17% Similarity=0.216 Sum_probs=200.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+|..|||||.+|+++|+.+++ .|.++.|+|..-.+||+|.+ .||. |.+-..|.+ ..+.++..-.+|
T Consensus 19 k~fDylvIGgGSGGvasARrAa~--~GAkv~l~E~~f~lGGTCVn---~GCV----PKKvm~~~a---~~~~~~~da~~y 86 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAAS--HGAKVALCELPFGLGGTCVN---VGCV----PKKVMWYAA---DYSEEMEDAKDY 86 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHh--cCceEEEEecCCCcCceEEe---eccc----cceeEEehh---hhhHHhhhhhhc
Confidence 35899999999999999999999 77999999997689999993 4542 223233332 223333344455
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcC-CcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFN-LRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
.|+.... .-.++..+.+....|..+++ +.++..-+..|.-++.++...+..+++++..+ + ....|.++ +++|
T Consensus 87 G~~~~~~-~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d-~--~~~~Ytak---~iLI 159 (478)
T KOG0405|consen 87 GFPINEE-GSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVND-G--TKIVYTAK---HILI 159 (478)
T ss_pred CCccccc-cCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecC-C--eeEEEecc---eEEE
Confidence 5554212 22366677776677777764 55566667777777765555555656654322 2 13446554 8999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||| ++|.+|+|||... ++ .+...|...
T Consensus 160 AtG--g~p~~PnIpG~E~---------------------------------------------gi------dSDgff~Le 186 (478)
T KOG0405|consen 160 ATG--GRPIIPNIPGAEL---------------------------------------------GI------DSDGFFDLE 186 (478)
T ss_pred EeC--CccCCCCCCchhh---------------------------------------------cc------ccccccchh
Confidence 999 9999999988320 00 111222222
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCceEE
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAEL 312 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~ 312 (1129)
..++.++| ||+|++|+|+|..++.+|.++.+..|.+..+...++. +++..+.++++
T Consensus 187 e~Pkr~vv----------vGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v 256 (478)
T KOG0405|consen 187 EQPKRVVV----------VGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKV 256 (478)
T ss_pred hcCceEEE----------EccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceee
Confidence 23334443 8999999999999999999999999998776543321 45556677766
Q ss_pred cCC--c---eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCc--ccccccccccCCCCCeEEecccc----cc
Q psy12350 313 TPT--G---VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKN--VQPLYKHLINIEHPSMCIIGYTY----RY 380 (1129)
Q Consensus 313 ~~~--~---v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~--~~~l~~~~~~~~~p~l~~~G~~~----~~ 380 (1129)
... + +..+.|+...+|.++||+|-.|+.--|. +..+++.+.+. .++-|++ ++.|+++.+|... ..
T Consensus 257 ~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~---Tnvp~I~avGDv~gk~~LT 333 (478)
T KOG0405|consen 257 IKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQN---TNVPSIWAVGDVTGKINLT 333 (478)
T ss_pred eecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEecccc---CCCCceEEeccccCcEecc
Confidence 432 2 4445666567999999999999876554 24667777654 3567777 5889999999874 34
Q ss_pred cccccccceeeehhhc
Q psy12350 381 PFLHESCGIKVVNKNV 396 (1129)
Q Consensus 381 ~~~~~~~~~~~~a~~~ 396 (1129)
|.+. ..++..|.-+
T Consensus 334 PVAi--aagr~la~rl 347 (478)
T KOG0405|consen 334 PVAI--AAGRKLANRL 347 (478)
T ss_pred hHHH--hhhhhHHHHh
Confidence 7666 5554444433
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=238.92 Aligned_cols=288 Identities=18% Similarity=0.229 Sum_probs=174.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+||||||||++||..|++ .|++|+|+|| +.+||+|.+ .+|. |.+...+..-.....+ ...+|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~-~~~GG~c~~---~gci----Psk~l~~~a~~~~~~~---~~~~~g 68 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAE--HGAKALLVEA-KKLGGTCVN---VGCV----PKKVMWYASDLAERMH---DAADYG 68 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCcEEEecc-cccccceec---cCcC----ccHHHHHHHHHHHHHh---HHhhcC
Confidence 4899999999999999999999 6699999999 569999994 4442 2221111111111111 111121
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH-----------HhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFA-----------DNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~-----------~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
++.. .....+..++.++.+++. ++.++ .++.++.+. . +..++.+ + ...+.||
T Consensus 69 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g~~~~-~-------~~~~v~v----~--~~~~~~d 131 (450)
T TIGR01421 69 FYQN-LENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKV--DVIFGHARF-T-------KDGTVEV----N--GRDYTAP 131 (450)
T ss_pred cccC-CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEEE-c-------cCCEEEE----C--CEEEEeC
Confidence 1110 000123344444433322 22333 555555432 1 1223322 1 1346788
Q ss_pred ceeeeEEEEecccCCCCCcc-ccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPSKA-EMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~~p-~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
+|||||| +.|..| ++||... . ..+.. +
T Consensus 132 -----~vIiAtG--s~p~~p~~i~g~~~-~------------------~~~~~--------------------------~ 159 (450)
T TIGR01421 132 -----HILIATG--GKPSFPENIPGAEL-G------------------TDSDG--------------------------F 159 (450)
T ss_pred -----EEEEecC--CCCCCCCCCCCCce-e------------------EcHHH--------------------------h
Confidence 9999999 888888 7876210 0 00000 0
Q ss_pred cccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------C
Q psy12350 237 ARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------N 302 (1129)
Q Consensus 237 ~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~ 302 (1129)
+. .+.. .++++ | ||||++|+|+|..|+..|++||+++|.+.+++..++. +
T Consensus 160 ~~-~~~~----~~~vv-------I----IGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~ 223 (450)
T TIGR01421 160 FA-LEEL----PKRVV-------I----VGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGIN 223 (450)
T ss_pred hC-cccc----CCeEE-------E----ECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCE
Confidence 00 0001 13333 3 8999999999999999999999999998776543221 3
Q ss_pred eEEcCCceEEcCC-----ceEEcCC-CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEec
Q psy12350 303 VVKKPDIAELTPT-----GVRFQDG-SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIG 375 (1129)
Q Consensus 303 i~~~~~v~~~~~~-----~v~~~dg-~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G 375 (1129)
+..+..|++++++ .+++++| +++++|.||+|+|++++..+|. +..++..+++..+...++ +.++.|++|.+|
T Consensus 224 i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-~~T~~p~IyAiG 302 (450)
T TIGR01421 224 VHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEY-QNTNVPGIYALG 302 (450)
T ss_pred EEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCC-CcCCCCCEEEEE
Confidence 5556678888642 2667788 5689999999999999998653 345677765543333333 235789999999
Q ss_pred ccc----cccccccccceeeehhhcc
Q psy12350 376 YTY----RYPFLHESCGIKVVNKNVQ 397 (1129)
Q Consensus 376 ~~~----~~~~~~~~~~~~~~a~~~~ 397 (1129)
... .++.+. .||+.+|.++.
T Consensus 303 D~~~~~~~~~~A~--~~g~~aa~~i~ 326 (450)
T TIGR01421 303 DVVGKVELTPVAI--AAGRKLSERLF 326 (450)
T ss_pred ecCCCcccHHHHH--HHHHHHHHHHh
Confidence 864 234454 78777777765
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.5e-23 Score=240.19 Aligned_cols=309 Identities=14% Similarity=0.124 Sum_probs=185.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc--------CCcCceEecCCCCCCCCCCCCccCcccccccccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT--------DNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPK 79 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~--------~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~ 79 (1129)
+.+||+||||||+|++||..+++.+ |.+|+|+|+. +.+||+|. +.||. |.+...+..-.....+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~-g~~V~lie~~~~~~~~~~~~~GGtCl---n~GCi----PsK~l~~~a~~~~~~~ 73 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLY-KKRVAVIDVQTHHGPPHYAALGGTCV---NVGCV----PKKLMVTGAQYMDTLR 73 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhc-CCEEEEEecccCccccccCCccCeec---CcCCc----cHHHHHHHHHHHHHHH
Confidence 3589999999999999999999931 6899999984 57999999 45552 3232222211111111
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcC--CcceeEeceeeeeeccccccCCCCceEEeccccC---ccceE
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFN--LRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRD---TVGFY 154 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~--~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~---~~~~~ 154 (1129)
....|.+.......-....++.++.++..+... +...+.-+..|+-+...+...+..++.+.....+ ....+
T Consensus 74 ---~~~~~gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~ 150 (486)
T TIGR01423 74 ---ESAGFGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERL 150 (486)
T ss_pred ---HhhccCeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEE
Confidence 111111100000112355566666655544431 1111111124554544444455666766532211 12457
Q ss_pred EecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccc
Q psy12350 155 LFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFE 234 (1129)
Q Consensus 155 ~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 234 (1129)
.|| +|||||| +.|..|++||... . .+. +
T Consensus 151 ~~d-----~lIIATG--s~p~~p~i~G~~~--~------------------~~~-------------------------~ 178 (486)
T TIGR01423 151 QAE-----HILLATG--SWPQMLGIPGIEH--C------------------ISS-------------------------N 178 (486)
T ss_pred ECC-----EEEEecC--CCCCCCCCCChhh--e------------------ech-------------------------h
Confidence 889 9999999 8899898876210 0 000 0
Q ss_pred cccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhccc---ccEEEEccccCCcccccCCC----------
Q psy12350 235 SFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTE---ATTVFLSHHSEHVKKLRFPN---------- 301 (1129)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~---~~~V~lv~r~~~~~~~~~~~---------- 301 (1129)
.+.. +. ...++++| ||||++|+|+|..++.+ |.+|||+++.+.+++..+++
T Consensus 179 ~~~~----~~-~~~~~vvI-----------IGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~ 242 (486)
T TIGR01423 179 EAFY----LD-EPPRRVLT-----------VGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLR 242 (486)
T ss_pred hhhc----cc-cCCCeEEE-----------ECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHHH
Confidence 0000 00 01233333 89999999999876554 89999999998876543321
Q ss_pred ----CeEEcCCceEEcC--C---ceEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCe
Q psy12350 302 ----NVVKKPDIAELTP--T---GVRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSM 371 (1129)
Q Consensus 302 ----~i~~~~~v~~~~~--~---~v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l 371 (1129)
++..+..+++++. + .+.+.+|+++++|.||+|+|.+|+..++. +..++.++++..+....++- ++.|++
T Consensus 243 ~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~-Ts~~~I 321 (486)
T TIGR01423 243 ANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSR-TNVPNI 321 (486)
T ss_pred HcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCc-CCCCCE
Confidence 4556777888863 2 26677888899999999999999998764 34556666554333333322 578999
Q ss_pred EEeccccc----ccccccccceeeehhhccc
Q psy12350 372 CIIGYTYR----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 372 ~~~G~~~~----~~~~~~~~~~~~~a~~~~~ 398 (1129)
|.+|.... ++.+. .|++.+|.++.+
T Consensus 322 yA~GDv~~~~~l~~~A~--~qG~~aa~ni~g 350 (486)
T TIGR01423 322 YAIGDVTDRVMLTPVAI--NEGAAFVDTVFG 350 (486)
T ss_pred EEeeecCCCcccHHHHH--HHHHHHHHHHhC
Confidence 99998743 34454 777777777753
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-22 Score=229.97 Aligned_cols=270 Identities=20% Similarity=0.276 Sum_probs=186.7
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccc-ccc-
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLM-ELC- 815 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~-~~~- 815 (1129)
+..+++|||+||+|..+|.++.+.| .++.++|+.+.+||+|.. .|| +|.+..++.....+..+... .|.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G--~kvalvE~~~~lGGtCln---~GC----IPsK~Ll~~a~~~~~~~~~~~~~Gi 73 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLG--LKVALVEKGERLGGTCLN---VGC----IPSKALLHAAEVIEEARHAAKEYGI 73 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CCEEEEeecCCcCceEEe---eCc----cccHHHHHHHHHHHHHhhcccccce
Confidence 3467899999999999999999999 679999998889999994 477 34332222211111000000 000
Q ss_pred -----CCCC------------------------------------CCC-----CC---CCCCChhhhhhccCCCCCCCCC
Q psy12350 816 -----GYGH------------------------------------KGN-----AD---KSYIGAKDVLENYNHPIYPEFK 846 (1129)
Q Consensus 816 -----~~~~------------------------------------~~~-----~~---~~~~~~~~v~~~~~~P~~P~i~ 846 (1129)
.+.+ ... .. ..+....-++++|++|+.|+++
T Consensus 74 ~~~~~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~ 153 (454)
T COG1249 74 SAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGP 153 (454)
T ss_pred ecCCCCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCC
Confidence 0000 000 00 0011111222299999999999
Q ss_pred CCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCc
Q psy12350 847 GKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSE 925 (1129)
Q Consensus 847 G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 925 (1129)
|++. -.++.+.+...... .+|+++|||||.+|+|+|..+++.|.+||++++.+..++. +++..+...+.+..
T Consensus 154 ~~~~--~~~~~s~~~l~~~~-lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~---- 226 (454)
T COG1249 154 GIDG--ARILDSSDALFLLE-LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEK---- 226 (454)
T ss_pred CCCC--CeEEechhhccccc-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHh----
Confidence 9875 23566666444443 4799999999999999999999999999999999888773 44444433332222
Q ss_pred cccccCCCCCeEEcCC--eeEEeCC----cEEecCCc--EeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccce
Q psy12350 926 RVTSLCLPNNVVLKPD--VAELTPT----GVRFQDGS--YEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHT 996 (1129)
Q Consensus 926 ~~~~~~~~~~V~~~~~--i~~v~~~----~V~~~dG~--~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~ 996 (1129)
.++++..+ +++++.+ .+.+++|+ ++++|.|++|+|++||++-|. +..|+++++++...+. ..
T Consensus 227 --------~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~ 297 (454)
T COG1249 227 --------GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQ 297 (454)
T ss_pred --------CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC-Cc
Confidence 14555544 6666543 26777877 689999999999999998654 4589999987665555 56
Q ss_pred eecCCCCcEEEccccccc-hhHHHHHHHHHHHHHHcC
Q psy12350 997 INIEHPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQG 1032 (1129)
Q Consensus 997 ~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g 1032 (1129)
+.++.||||++||+.... ..+.+..|++.++..+.|
T Consensus 298 ~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 298 MTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred cccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence 677899999999996554 669999999999999986
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-22 Score=237.94 Aligned_cols=263 Identities=20% Similarity=0.259 Sum_probs=168.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
++|+|||||+||++||+.|++.+++++|+|+|+++.++ |.+ +.++....+
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~----~~~--------------------~~lp~~~~~------ 51 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS----FAN--------------------CALPYYIGE------ 51 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc----ccc--------------------CCcchhhcC------
Confidence 48999999999999999999877789999999987543 100 001110000
Q ss_pred CCCCCCCCCCHHHHHHH-HHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 90 KGHPDKSYIAANDVLEY-LNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~y-l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
......++..+ .+.+.++.++ .++++++|+.|+. +...+.+.+...++.....|| +|||||
T Consensus 52 ------~~~~~~~~~~~~~~~~~~~~~i--~v~~~~~V~~Id~-----~~~~v~~~~~~~~~~~~~~yd-----~lviAt 113 (438)
T PRK13512 52 ------VVEDRKYALAYTPEKFYDRKQI--TVKTYHEVIAIND-----ERQTVTVLNRKTNEQFEESYD-----KLILSP 113 (438)
T ss_pred ------ccCCHHHcccCCHHHHHHhCCC--EEEeCCEEEEEEC-----CCCEEEEEECCCCcEEeeecC-----EEEECC
Confidence 01111122222 1334455565 7888999999986 445565554322223345799 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|..|++++.. ...+....... ...+.+.....
T Consensus 114 G--s~~~~~~~~~~~---------------~~~~~~~~~~~----------------------------~l~~~l~~~~~ 148 (438)
T PRK13512 114 G--ASANSLGFESDI---------------TFTLRNLEDTD----------------------------AIDQFIKANQV 148 (438)
T ss_pred C--CCCCCCCCCCCC---------------eEEecCHHHHH----------------------------HHHHHHhhcCC
Confidence 9 888877653210 00000000000 00000000012
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCceEEcC
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAELTP 314 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~~~ 314 (1129)
++++ | ||||++|+|+|..|++.|.+|+++++++.+++...++ ++..+..|+++++
T Consensus 149 ~~vv-------V----iGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~ 217 (438)
T PRK13512 149 DKAL-------V----VGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAING 217 (438)
T ss_pred CEEE-------E----ECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC
Confidence 3333 3 8999999999999999999999999988765432221 4556788999988
Q ss_pred CceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 315 TGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 315 ~~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
..|++++|+++++|.||+|+|++++.++++ ..++.++++..+...+++- ++.|++|++|...
T Consensus 218 ~~v~~~~g~~~~~D~vl~a~G~~pn~~~l~-~~gl~~~~~G~i~Vd~~~~-t~~~~IyA~GD~~ 279 (438)
T PRK13512 218 NEVTFKSGKVEHYDMIIEGVGTHPNSKFIE-SSNIKLDDKGFIPVNDKFE-TNVPNIYAIGDII 279 (438)
T ss_pred CEEEECCCCEEEeCEEEECcCCCcChHHHH-hcCcccCCCCcEEECCCcc-cCCCCEEEeeeeE
Confidence 789999999999999999999999999886 3556665544333333322 5789999999874
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.5e-22 Score=232.86 Aligned_cols=290 Identities=17% Similarity=0.190 Sum_probs=176.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+||||||||++||..+++ .|++|+|+|+ +.+||+|.+ .||. |.+...+... .......++.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~lie~-~~~GG~c~~---~gci----Psk~l~~~a~---~~~~~~~~~~~g 68 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAN--HGAKVAIAEE-PRVGGTCVI---RGCV----PKKLMVYGST---FGGEFEDAAGYG 68 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHh--CCCcEEEEec-CccCceeec---CCcC----chHHHHHHHH---HHHHHhhhHhcC
Confidence 4799999999999999999999 6699999999 579999994 4542 2222222211 111111122222
Q ss_pred CCCCCCCCCCCHHHH-----------HHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 89 HKGHPDKSYIAANDV-----------LEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~-----------~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
.... ..-++..++ .++++...++.++ .+..+ ++..++. .++.+. . ....+.||
T Consensus 69 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~~g-~~~~v~~-------~~v~v~--~--~g~~~~~d 132 (446)
T TIGR01424 69 WTVG--KARFDWKKLLQKKDDEIARLSGLYKRLLANAGV--ELLEG-RARLVGP-------NTVEVL--Q--DGTTYTAK 132 (446)
T ss_pred cCCC--CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEEE-EEEEecC-------CEEEEe--c--CCeEEEcC
Confidence 1100 001122222 3333444444444 44433 4544433 223332 1 12356789
Q ss_pred ceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFA 237 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 237 (1129)
+|||||| +.|..|++||... .+ .+.. +.
T Consensus 133 -----~lIiATG--s~p~~p~i~G~~~-~~------------------~~~~--------------------------~~ 160 (446)
T TIGR01424 133 -----KILIAVG--GRPQKPNLPGHEL-GI------------------TSNE--------------------------AF 160 (446)
T ss_pred -----EEEEecC--CcCCCCCCCCccc-ee------------------chHH--------------------------hh
Confidence 9999999 8898888876210 00 0000 00
Q ss_pred ccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCe
Q psy12350 238 RCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNV 303 (1129)
Q Consensus 238 ~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i 303 (1129)
. +. ...++++ | ||+|++|+|+|..+++.|.+|+++++.+.+++...+ -++
T Consensus 161 ~----l~-~~~~~vv-------V----IGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i 224 (446)
T TIGR01424 161 H----LP-TLPKSIL-------I----LGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRI 224 (446)
T ss_pred c----cc-ccCCeEE-------E----ECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEE
Confidence 0 00 0123333 3 899999999999999999999999998876543221 145
Q ss_pred EEcCCceEEcC--Cc--eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 304 VKKPDIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 304 ~~~~~v~~~~~--~~--v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
..+..|+++++ ++ +.+.+|+++++|.||+|+|.+++...|. +..++..+++..+....++ -++.|++|++|...
T Consensus 225 ~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~-~Ts~~~IyA~GD~~ 303 (446)
T TIGR01424 225 HPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYS-RTSIPSIYAVGDVT 303 (446)
T ss_pred EeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCC-ccCCCCEEEeeccC
Confidence 55677888863 23 5667888899999999999999987642 3455666554433322222 25789999999875
Q ss_pred c----ccccccccceeeehhhccc
Q psy12350 379 R----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 379 ~----~~~~~~~~~~~~~a~~~~~ 398 (1129)
. ++.+. .||+.+|.++.+
T Consensus 304 ~~~~l~~~A~--~~g~~~a~~i~~ 325 (446)
T TIGR01424 304 DRINLTPVAI--MEATCFANTEFG 325 (446)
T ss_pred CCccchhHHH--HHHHHHHHHHhc
Confidence 3 23344 777777777653
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=218.79 Aligned_cols=277 Identities=15% Similarity=0.173 Sum_probs=180.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||+|||||+|||+||..|++ .+++|+|||+++ +||.|.... .+..++.++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~-~gg~~~~~~-------------------------~~~~~~~~~- 51 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAAR--ANLKTLIIEGME-PGGQLTTTT-------------------------EVENYPGFP- 51 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCCEEEEeccC-CCcceeecc-------------------------cccccCCCC-
Confidence 489999999999999999999 669999999975 888887310 111122221
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
......++.++++++++++++ .+++ ++|+++++.. +.|.+.. . ....+.|| +||+|||
T Consensus 52 ------~~~~~~~~~~~l~~~~~~~gv--~~~~-~~v~~v~~~~---~~~~v~~---~--~~~~~~~d-----~liiAtG 109 (300)
T TIGR01292 52 ------EGISGPELMEKMKEQAVKFGA--EIIY-EEVIKVDLSD---RPFKVKT---G--DGKEYTAK-----AVIIATG 109 (300)
T ss_pred ------CCCChHHHHHHHHHHHHHcCC--eEEE-EEEEEEEecC---CeeEEEe---C--CCCEEEeC-----EEEECCC
Confidence 123456889999999999987 6777 7898887631 2233332 1 12457899 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccccc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKD 249 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1129)
..|+.|++||... +.+. +.+... . .... ...++
T Consensus 110 --~~~~~~~i~g~~~--~~~~-------------~~~~~~--------------------------~-~~~~---~~~~~ 142 (300)
T TIGR01292 110 --ASARKLGIPGEDE--FLGR-------------GVSYCA--------------------------T-CDGP---FFKNK 142 (300)
T ss_pred --CCcccCCCCChhh--cCCc-------------cEEEee--------------------------e-cChh---hcCCC
Confidence 6788787876321 1110 000000 0 0000 11234
Q ss_pred ceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc-------c-C-CCCeEEcCCceEEcCCc----
Q psy12350 250 KYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL-------R-F-PNNVVKKPDIAELTPTG---- 316 (1129)
Q Consensus 250 ~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~-------~-~-~~~i~~~~~v~~~~~~~---- 316 (1129)
+++| ||+|.+|+|+|..|++.+++|++++|.+.+... . . .-++.....++++++++
T Consensus 143 ~v~V-----------iG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~ 211 (300)
T TIGR01292 143 EVAV-----------VGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEG 211 (300)
T ss_pred EEEE-----------ECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHhCCCeEEEeccEEEEEEccCcEEE
Confidence 4444 899999999999999999999999998754211 1 1 11344567788887553
Q ss_pred eEEc---CC--CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc---cccccccc
Q psy12350 317 VRFQ---DG--SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY---PFLHESCG 388 (1129)
Q Consensus 317 v~~~---dg--~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~---~~~~~~~~ 388 (1129)
+.+. +| .++++|.||+|+|++++.+++... +..+++..+...++ +..+.|++|++|..... ....+..|
T Consensus 212 v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~--~~~~~~g~i~v~~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~ 288 (300)
T TIGR01292 212 VKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL--LELDEGGYIVTDEG-MRTSVPGVFAAGDVRDKGYRQAVTAAGD 288 (300)
T ss_pred EEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh--heecCCCcEEECCC-CccCCCCEEEeecccCcchhhhhhhhhh
Confidence 4553 24 457999999999999999888743 44444443333333 33688999999987641 12333477
Q ss_pred eeeehhhccc
Q psy12350 389 IKVVNKNVQP 398 (1129)
Q Consensus 389 ~~~~a~~~~~ 398 (1129)
++.+|+++.+
T Consensus 289 g~~aa~~i~~ 298 (300)
T TIGR01292 289 GCIAALSAER 298 (300)
T ss_pred HHHHHHHHHh
Confidence 7777777654
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-23 Score=221.69 Aligned_cols=238 Identities=20% Similarity=0.223 Sum_probs=156.0
Q ss_pred cccccccCCCCCcCcCCCChHHHHHHHH---hcccceecCCCCCcceecccCCCC---------CcceEEEEEEcccCCC
Q psy12350 433 LYKHLINIDHPSMCIIGIPGDTVVFYMF---DLQDKIRPGRGNPRPSACEADALP---------TNLTRLTYIISSRNYS 500 (1129)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~e~~~y~~---~~~~~i~~~~~~~~v~~~~~~~~~---------~~~~~~~~v~atG~~~ 500 (1129)
|++|.+.++|.+...++|+|.||.+||+ +..+.++|+.+|++|..++++... +.+.++++||++| .
T Consensus 78 L~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G--~ 155 (436)
T COG3486 78 LHEHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVG--T 155 (436)
T ss_pred HHHcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccC--C
Confidence 5688899999999999999999999999 333889998888888677776432 1334577999999 8
Q ss_pred CCCCCC-CCCCCCcCCcEEecCCCC-CCCCCCCCe-EEEEccCcchhhhHHHhhcc----cCeEEEEEEecceeeecccc
Q psy12350 501 NPVYPD-FKGKDVCQIPIMHSHEYR-TPEPFAGKR-AVVVGSGPSGLDITHDISTE----ATTVSAYLRFDNKTITKRKK 573 (1129)
Q Consensus 501 ~p~~p~-~~g~~~f~g~v~hs~~~~-~~~~~~~k~-v~ViG~g~sa~~~~~~l~~~----~~~v~~~~r~~~~~~~~~~~ 573 (1129)
+|++|+ +..+. .+++|||++|. +..++.+|+ |+|||+||||+|++.+|... ..++.|++|++++ .+
T Consensus 156 ~P~IP~~f~~l~--~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf-----~p 228 (436)
T COG3486 156 QPYIPPCFRSLI--GERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGF-----LP 228 (436)
T ss_pred CcCCChHHhCcC--ccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCC-----Cc
Confidence 999996 44443 24899999997 456677777 99999999999999999743 4579999999988 44
Q ss_pred ccCCCCCCCCCCcccccccccccceeeeecccCCCccCCccEEEEccccccccc-----cccccccCcEEEEecCCcchh
Q psy12350 574 FDKGRNYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDI-----TLDIATRASTVFLSHHSERVT 648 (1129)
Q Consensus 574 ~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 648 (1129)
++.+++.++.|.|++. ..+|.++...+.+.+...+...+|+.. +++..... + ..
T Consensus 229 ~d~Skf~~e~F~P~y~-----------dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~-~--l~------- 287 (436)
T COG3486 229 MDYSKFGLEYFSPEYT-----------DYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQ-S--LG------- 287 (436)
T ss_pred cccchhhhhhcCchhH-----------HHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHH-H--hc-------
Confidence 4556666666666653 444556655443333333322222221 11111100 0 00
Q ss_pred cccCCCcEEe-cCCceEEeCCc---EEE-------cCCcEEeccEEEEccCCCCCCcccccccC
Q psy12350 649 SLCLPNNVVL-KPDVAELTPTG---VRF-------QDGSYEQVDIILCCTGYTNHYPFLHESCG 701 (1129)
Q Consensus 649 ~l~~~~~~~v-~~~I~~it~~g---V~~-------~dG~~~~~D~VVlATGy~~~~~~l~~~l~ 701 (1129)
-..+++.+. ...+..++..| +.+ ...+++++|+||+||||+...|.|.+.+.
T Consensus 288 -~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~ 350 (436)
T COG3486 288 -GRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLA 350 (436)
T ss_pred -CCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHH
Confidence 011222222 12344444333 433 23345789999999999987775655443
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-22 Score=236.31 Aligned_cols=299 Identities=15% Similarity=0.164 Sum_probs=176.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+||||||||++||.+|++ .|.+|+||||++.+||+|.+ .+|. |.+............+....|.++
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~--~G~~v~liE~~~~~GG~~~~---~gci----psk~l~~~~~~~~~~~~~~~~~~~ 74 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAK--LGKRVAVIERYRNVGGGCTH---TGTI----PSKALREAVLRLIGFNQNPLYSSY 74 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCEEEEEeccccccccccc---cCCC----CHHHHHHHHHHHHHHhhhhhhccc
Confidence 35899999999999999999999 66999999998899999984 2331 111100000000000111111222
Q ss_pred CCCCCCCCCCCCHHHHHHHHH-----------HHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLN-----------DFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLF 156 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~-----------~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1129)
+. ...++..++.++.+ .+.++.++ .++.++ +..++ ...+.+.. .++......|
T Consensus 75 ~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g~-~~~~~-------~~~~~v~~-~~g~~~~~~~ 138 (461)
T PRK05249 75 RV-----KLRITFADLLARADHVINKQVEVRRGQYERNRV--DLIQGR-ARFVD-------PHTVEVEC-PDGEVETLTA 138 (461)
T ss_pred CC-----cCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEE-EEEec-------CCEEEEEe-CCCceEEEEc
Confidence 11 11224445544433 33333333 444332 22222 23333432 1222235678
Q ss_pred cceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 157 DLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 157 d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
| +|||||| +.|..|++++.. + +......
T Consensus 139 d-----~lviATG--s~p~~p~~~~~~-----~-------------~~v~~~~--------------------------- 166 (461)
T PRK05249 139 D-----KIVIATG--SRPYRPPDVDFD-----H-------------PRIYDSD--------------------------- 166 (461)
T ss_pred C-----EEEEcCC--CCCCCCCCCCCC-----C-------------CeEEcHH---------------------------
Confidence 9 9999999 888888764310 0 0000000
Q ss_pred cccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------C
Q psy12350 237 ARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------N 302 (1129)
Q Consensus 237 ~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~ 302 (1129)
....+. .. +++++| ||+|++|+|+|..|++.|.+|+++++.+.+++..+++ +
T Consensus 167 --~~~~~~-~~-------~~~v~I----iGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~ 232 (461)
T PRK05249 167 --SILSLD-HL-------PRSLII----YGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVT 232 (461)
T ss_pred --Hhhchh-hc-------CCeEEE----ECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCE
Confidence 000000 01 233333 8999999999999999999999999998776543221 4
Q ss_pred eEEcCCceEEc--CCc--eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEeccc
Q psy12350 303 VVKKPDIAELT--PTG--VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYT 377 (1129)
Q Consensus 303 i~~~~~v~~~~--~~~--v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~ 377 (1129)
+.....|++++ +++ +.+++|+++++|.||+|+|.+++...+. +..++..+++..+....++ -.+.|++|.+|..
T Consensus 233 v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~~~IyAiGD~ 311 (461)
T PRK05249 233 IRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENY-QTAVPHIYAVGDV 311 (461)
T ss_pred EEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCc-ccCCCCEEEeeec
Confidence 55567788886 333 4567888899999999999999988642 2455666554433332222 2578999999986
Q ss_pred ccccc--cccccceeeehhhccc
Q psy12350 378 YRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 378 ~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
...|. ..+..|++.+|.++.+
T Consensus 312 ~~~~~~~~~A~~~g~~aa~~i~g 334 (461)
T PRK05249 312 IGFPSLASASMDQGRIAAQHAVG 334 (461)
T ss_pred CCCcccHhHHHHHHHHHHHHHcC
Confidence 53221 1223777777777763
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-22 Score=235.95 Aligned_cols=290 Identities=16% Similarity=0.191 Sum_probs=174.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCcccccc-CCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMEL-SGY 87 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~-~d~ 87 (1129)
.+||+||||||||++||..|++ .|++|+|+|+. .+||+|.+ .+|. |.+...|..-. ...+..+ +.|
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~--~G~~V~liE~~-~~GG~c~n---~gci----P~k~l~~~~~~---~~~~~~~~~~~ 70 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAM--YGAKVALIEAK-RLGGTCVN---VGCV----PKKLMWYGAQI---AEAFHDYAPGY 70 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecc-chhhhhhc---cCcc----hHHHHHHHHHH---HHHHHhHHHhc
Confidence 4899999999999999999999 67999999995 79999984 4442 22222222100 0000000 001
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHH-----------HHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDF-----------ADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLF 156 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1129)
.+.. .........+.++.+.. .++.++ .+..++ ++.++ ..++++ + .....|
T Consensus 71 g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g~-~~~v~-------~~~v~~----~--g~~~~~ 132 (450)
T PRK06116 71 GFDV--TENKFDWAKLIANRDAYIDRLHGSYRNGLENNGV--DLIEGF-ARFVD-------AHTVEV----N--GERYTA 132 (450)
T ss_pred CCCC--CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEE-EEEcc-------CCEEEE----C--CEEEEe
Confidence 1110 00012333444333222 222333 444443 33332 233333 1 235678
Q ss_pred cceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 157 DLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 157 d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
| +|||||| +.|..|++||... + ..+.. +
T Consensus 133 d-----~lViATG--s~p~~p~i~g~~~--~-----------------~~~~~--------------------------~ 160 (450)
T PRK06116 133 D-----HILIATG--GRPSIPDIPGAEY--G-----------------ITSDG--------------------------F 160 (450)
T ss_pred C-----EEEEecC--CCCCCCCCCCcce--e-----------------EchhH--------------------------h
Confidence 9 9999999 8899888876210 0 00000 0
Q ss_pred cccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CC
Q psy12350 237 ARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NN 302 (1129)
Q Consensus 237 ~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~ 302 (1129)
+. .+. ..++++ | ||+|++|+|+|..|++.+.+|+++++.+.+++...+ -+
T Consensus 161 ~~-~~~----~~~~vv-------V----iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~ 224 (450)
T PRK06116 161 FA-LEE----LPKRVA-------V----VGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIR 224 (450)
T ss_pred hC-ccc----cCCeEE-------E----ECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcE
Confidence 00 000 123333 3 899999999999999999999999998866543221 14
Q ss_pred eEEcCCceEEcC--Cc---eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecc
Q psy12350 303 VVKKPDIAELTP--TG---VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGY 376 (1129)
Q Consensus 303 i~~~~~v~~~~~--~~---v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~ 376 (1129)
+..++.|.++++ ++ +.+.+|+++++|.||+|+|.+++..+|. +..++..+++..+....++- ++.|++|.+|.
T Consensus 225 i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~-Ts~~~IyA~GD 303 (450)
T PRK06116 225 LHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQN-TNVPGIYAVGD 303 (450)
T ss_pred EECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCC-cCCCCEEEEee
Confidence 555777888863 22 5677898899999999999999998643 34556666554333333322 57899999998
Q ss_pred ccc-ccc-cccccceeeehhhccc
Q psy12350 377 TYR-YPF-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 377 ~~~-~~~-~~~~~~~~~~a~~~~~ 398 (1129)
... .++ ..+..||+.+|.++.+
T Consensus 304 ~~~~~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 304 VTGRVELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred cCCCcCcHHHHHHHHHHHHHHHhC
Confidence 742 222 2223788888887754
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-22 Score=234.15 Aligned_cols=299 Identities=17% Similarity=0.181 Sum_probs=180.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC--------CcCceEecCCCCCCCCCCCCccCcccccccccCCcc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD--------NVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKE 80 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~--------~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~ 80 (1129)
.+||+||||||||++||.+|++ .|.+|+|+|+.. .+||+|.+ .+|. |.+...+........+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~--~G~~V~lie~~~~~~~~~~~~~GG~C~n---~gci----PsK~l~~~a~~~~~~~~ 75 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAA--HGKKVALFDYVKPSTQGTKWGLGGTCVN---VGCV----PKKLMHYAANIGSIFHH 75 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHh--CCCeEEEEeccCCCCccccccccceecc---cccc----chHHHHHHHHHHHHHHh
Confidence 4799999999999999999999 679999999731 49999983 4442 21211111100000000
Q ss_pred ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEece---eeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 81 IMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNK---NVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 81 ~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~---~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
....|.+.. ..-.+..++.++++..+++++. .++.+. .|+-+.......+.+++.+.+ .+....+.||
T Consensus 76 --~~~~~g~~~---~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~--~~~~~~i~~d 146 (499)
T PTZ00052 76 --DSQMYGWKT---SSSFNWGKLVTTVQNHIRSLNF--SYRTGLRSSKVEYINGLAKLKDEHTVSYGD--NSQEETITAK 146 (499)
T ss_pred --HHhcCCCCC---CCCcCHHHHHHHHHHHHHHhhH--HHHHHhhhcCcEEEEEEEEEccCCEEEEee--CCCceEEECC
Confidence 001111110 1134677888888888877643 222222 333333222223445555542 2223457899
Q ss_pred ceeeeEEEEecccCCCCCccc-cccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPSKAE-MLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~~p~-i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
+|||||| +.|..|. +||.....+
T Consensus 147 -----~lIIATG--s~p~~p~~i~G~~~~~~------------------------------------------------- 170 (499)
T PTZ00052 147 -----YILIATG--GRPSIPEDVPGAKEYSI------------------------------------------------- 170 (499)
T ss_pred -----EEEEecC--CCCCCCCCCCCccceee-------------------------------------------------
Confidence 9999999 8888874 766211000
Q ss_pred cccccccccc-cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------C
Q psy12350 237 ARCSEDFTEF-RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------N 301 (1129)
Q Consensus 237 ~~~~~~~~~~-~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~ 301 (1129)
...+.+... ..++++| ||||++|+|+|..|++.|.+||+++++. +++...+ -
T Consensus 171 -~~~~~~~~~~~~~~vvI-----------IGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l~~~d~~~~~~l~~~l~~~GV 237 (499)
T PTZ00052 171 -TSDDIFSLSKDPGKTLI-----------VGASYIGLETAGFLNELGFDVTVAVRSI-PLRGFDRQCSEKVVEYMKEQGT 237 (499)
T ss_pred -cHHHHhhhhcCCCeEEE-----------ECCCHHHHHHHHHHHHcCCcEEEEEcCc-ccccCCHHHHHHHHHHHHHcCC
Confidence 000000000 0123333 8999999999999999999999999853 3332211 1
Q ss_pred CeEEcCCceEEcC--C--ceEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecc
Q psy12350 302 NVVKKPDIAELTP--T--GVRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGY 376 (1129)
Q Consensus 302 ~i~~~~~v~~~~~--~--~v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~ 376 (1129)
++.....++++++ + .+.+++|+++++|.||+|+|++++..+|. +..++.++++.....-.. .++.|++|.+|.
T Consensus 238 ~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~--~Ts~p~IyAiGD 315 (499)
T PTZ00052 238 LFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTNIPNIFAVGD 315 (499)
T ss_pred EEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC--cCCCCCEEEEEE
Confidence 3444555666653 2 26678898899999999999999999874 356677765442211112 367899999998
Q ss_pred ccc-----ccccccccceeeehhhccc
Q psy12350 377 TYR-----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 377 ~~~-----~~~~~~~~~~~~~a~~~~~ 398 (1129)
... ++.+. .|++.+|.++.+
T Consensus 316 v~~~~~~l~~~A~--~~g~~aa~ni~g 340 (499)
T PTZ00052 316 VVEGRPELTPVAI--KAGILLARRLFK 340 (499)
T ss_pred ecCCCcccHHHHH--HHHHHHHHHHhC
Confidence 642 22233 777777777753
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-21 Score=229.81 Aligned_cols=294 Identities=14% Similarity=0.102 Sum_probs=174.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+||||||||++||.+|++ .|++|+|+||. .+||+|.+ .+|. |.+ .++...............++
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~-~~GG~c~~---~gci----Psk-~l~~~a~~~~~~~~~~~~g~ 72 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAG--LGMKVALIERG-LLGGTCVN---TGCV----PTK-TLIASARAAHLARRAAEYGV 72 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCeEEEEecC-ccCCceec---cccC----cHH-HHHHHHHHHHHHHHHHhcCc
Confidence 45899999999999999999999 67999999994 79999984 3442 221 11111110000000011111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH-----------hc-CCcceeEeceeeeeeccccccCCCCceEEeccccCccceEE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFAD-----------NF-NLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL 155 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~-----------~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1129)
+.+ ....++..++.++.+..++ +. ++ .++.++.+. + +..++.+ + ...+.
T Consensus 73 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~v~~g~~~~-~-------~~~~v~v----~--~~~~~ 133 (463)
T PRK06370 73 SVG---GPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGV--DVFRGHARF-E-------SPNTVRV----G--GETLR 133 (463)
T ss_pred ccC---ccCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCc--EEEEEEEEE-c-------cCCEEEE----C--cEEEE
Confidence 100 0012344555554443332 22 33 455555432 1 2233333 1 13467
Q ss_pred ecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccc
Q psy12350 156 FDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFES 235 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 235 (1129)
|| +|||||| +.|..|++||.....+ .
T Consensus 134 ~d-----~lViATG--s~p~~p~i~G~~~~~~------------------~----------------------------- 159 (463)
T PRK06370 134 AK-----RIFINTG--ARAAIPPIPGLDEVGY------------------L----------------------------- 159 (463)
T ss_pred eC-----EEEEcCC--CCCCCCCCCCCCcCce------------------E-----------------------------
Confidence 89 9999999 8899998877321000 0
Q ss_pred ccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------C
Q psy12350 236 FARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------N 301 (1129)
Q Consensus 236 ~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~ 301 (1129)
...+.+.... .+++|+| ||+|++|+|+|..|++.|.+|+++++.+.+++...+ -
T Consensus 160 --~~~~~~~~~~------~~~~vvV----IGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV 227 (463)
T PRK06370 160 --TNETIFSLDE------LPEHLVI----IGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGI 227 (463)
T ss_pred --cchHhhCccc------cCCEEEE----ECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCC
Confidence 0000000000 1233333 899999999999999999999999998877653221 1
Q ss_pred CeEEcCCceEEcCC--c--eEEc--C-CCEeecCEEEEcccccccCCCC-CCCCCeEeecCcccccccccccCCCCCeEE
Q psy12350 302 NVVKKPDIAELTPT--G--VRFQ--D-GSYEQVDIILYCTGYTYRYPFL-HESCGIKVVNKNVQPLYKHLINIEHPSMCI 373 (1129)
Q Consensus 302 ~i~~~~~v~~~~~~--~--v~~~--d-g~~~~~D~VI~atG~~~~~~~l-~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~ 373 (1129)
++..+..|.+++++ + +.+. + ++++++|.||+|+|.+++...| -+..++.++++..+....++ -.+.|++|.
T Consensus 228 ~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l-~t~~~~IyA 306 (463)
T PRK06370 228 DVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQL-RTTNPGIYA 306 (463)
T ss_pred EEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCC-cCCCCCEEE
Confidence 45567778888643 2 3332 3 3468999999999999998844 23455666655444433332 257899999
Q ss_pred ecccccccc--cccccceeeehhhccc
Q psy12350 374 IGYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 374 ~G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
+|.....+. .....|++.+|.++.+
T Consensus 307 iGD~~~~~~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 307 AGDCNGRGAFTHTAYNDARIVAANLLD 333 (463)
T ss_pred eeecCCCcccHHHHHHHHHHHHHHHhC
Confidence 998754321 1123677777777754
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-22 Score=209.91 Aligned_cols=192 Identities=22% Similarity=0.326 Sum_probs=117.4
Q ss_pred EEEcCChHHHHHHHHhhcCCCCce-EEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCCCC
Q psy12350 13 GVIGGGAGGLTATKRLTEPGSGFT-CTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHHKG 91 (1129)
Q Consensus 13 ~IIGaG~aGl~aA~~l~~~~~~~~-v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~~~ 91 (1129)
+|||||||||++|.+|++ .|.+ |+||||++.+||.|.......+ ..++.... ..+.+++++...
T Consensus 1 ~IIGaG~aGl~~a~~l~~--~g~~~v~v~e~~~~~Gg~w~~~~~~~~---------~~~~~~~~----~~~~~~~~~~~~ 65 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE--RGIDPVVVLERNDRPGGVWRRYYSYTR---------LHSPSFFS----SDFGLPDFESFS 65 (203)
T ss_dssp EEE--SHHHHHHHHHHHH--TT---EEEEESSSSSTTHHHCH-TTTT----------BSSSCCT----GGSS--CCCHSC
T ss_pred CEECcCHHHHHHHHHHHh--CCCCcEEEEeCCCCCCCeeEEeCCCCc---------cccCcccc----ccccCCcccccc
Confidence 799999999999999999 4578 9999999999999984221110 00110000 011111221110
Q ss_pred -------CCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEE
Q psy12350 92 -------HPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFL 164 (1129)
Q Consensus 92 -------~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 164 (1129)
.....+++.+++.+|++.+++++++ .++++++|+++++. .++|.+++.+. ....+| +|
T Consensus 66 ~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l--~i~~~~~V~~v~~~---~~~w~v~~~~~-----~~~~a~-----~V 130 (203)
T PF13738_consen 66 FDDSPEWRWPHDFPSGEEVLDYLQEYAERFGL--EIRFNTRVESVRRD---GDGWTVTTRDG-----RTIRAD-----RV 130 (203)
T ss_dssp HHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTG--GEETS--EEEEEEE---TTTEEEEETTS------EEEEE-----EE
T ss_pred cccCCCCCCCcccCCHHHHHHHHHHHHhhcCc--ccccCCEEEEEEEe---ccEEEEEEEec-----ceeeee-----eE
Confidence 0124578999999999999999998 59999999999885 35577766432 345577 99
Q ss_pred EEecccCCCCCcccccc-chhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccc
Q psy12350 165 QLMQGHVTLPSKAEMLA-DTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDF 243 (1129)
Q Consensus 165 vvAtG~~~~p~~p~i~g-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 243 (1129)
|+|||.++.|+.|++|| ... ...|+..+ ..+..+
T Consensus 131 VlAtG~~~~p~~p~~~g~~~~------------------~~~h~~~~---------------------------~~~~~~ 165 (203)
T PF13738_consen 131 VLATGHYSHPRIPDIPGSAFR------------------PIIHSADW---------------------------RDPEDF 165 (203)
T ss_dssp EE---SSCSB---S-TTGGCS------------------EEEEGGG----------------------------STTGGC
T ss_pred EEeeeccCCCCcccccccccc------------------ceEehhhc---------------------------CChhhc
Confidence 99999999999999877 110 11222211 223333
Q ss_pred ccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCC
Q psy12350 244 TEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEH 293 (1129)
Q Consensus 244 ~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~ 293 (1129)
++++++| ||+|.||+|+|..|++.|++|++++|++.
T Consensus 166 ---~~k~V~V-----------VG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 166 ---KGKRVVV-----------VGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp ---TTSEEEE-----------E--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred ---CCCcEEE-----------EcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 3455555 79999999999999999999999999864
|
... |
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-21 Score=229.25 Aligned_cols=299 Identities=12% Similarity=0.157 Sum_probs=173.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcc-----cccccccCCccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSM-----YKSLKTNLPKEIME 83 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~-----y~~l~~~~~~~~~~ 83 (1129)
.+||+||||||||++||.+|++ .|.+|+|+|+ +.+||+|.+ .+|. |.+... +..+....
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~--~G~~V~lie~-~~~GG~c~~---~gci----Psk~l~~~~~~~~~~~~~~------ 67 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQ--LGLKTAVVEK-KYWGGVCLN---VGCI----PSKALLRNAELAHIFTKEA------ 67 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEec-CCCCCceec---CCcc----ccHHHHhhHHHHHHHHHHH------
Confidence 4899999999999999999999 6799999999 579999984 4442 211111 11111000
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEe-ceeeeeeccccccCCCCceEEeccccCccceEEecceeee
Q psy12350 84 LSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLV-NKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRF 162 (1129)
Q Consensus 84 ~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 162 (1129)
..+... .........+.++.+...++..-....++ ...|+.++..+...+..++.+.. .+++.....||
T Consensus 68 -~~~gi~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~-~~g~~~~~~~d----- 137 (466)
T PRK07818 68 -KTFGIS---GEVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDL-NDGGTETVTFD----- 137 (466)
T ss_pred -HhcCCC---cCcccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEe-cCCCeeEEEcC-----
Confidence 001000 00122444445444433322210001111 12444444332223445555543 22223457899
Q ss_pred EEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccc
Q psy12350 163 FLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSED 242 (1129)
Q Consensus 163 ~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 242 (1129)
+|||||| +.|..| ||.. ..+. .. ...+.
T Consensus 138 ~lViATG--s~p~~~--pg~~---~~~~--------------v~-------------------------------~~~~~ 165 (466)
T PRK07818 138 NAIIATG--SSTRLL--PGTS---LSEN--------------VV-------------------------------TYEEQ 165 (466)
T ss_pred EEEEeCC--CCCCCC--CCCC---CCCc--------------EE-------------------------------chHHH
Confidence 9999999 777654 3310 0000 00 00000
Q ss_pred cccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCeEEcCC
Q psy12350 243 FTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNVVKKPD 308 (1129)
Q Consensus 243 ~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i~~~~~ 308 (1129)
+..... +++++| ||||++|+|+|..|++.|.+|+++++.+.+++..++ -++..++.
T Consensus 166 ~~~~~~------~~~vvV----IGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~ 235 (466)
T PRK07818 166 ILSREL------PKSIVI----AGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTK 235 (466)
T ss_pred hccccC------CCeEEE----ECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCE
Confidence 000001 223333 899999999999999999999999998877664322 14666778
Q ss_pred ceEEcCCc----eEEc--CCC--EeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEeccccc
Q psy12350 309 IAELTPTG----VRFQ--DGS--YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYR 379 (1129)
Q Consensus 309 v~~~~~~~----v~~~--dg~--~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~ 379 (1129)
|+++++++ +.+. ||+ ++++|.||+|+|++++...+. +..++..+++..+....++ -+++|++|++|....
T Consensus 236 v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~-~Ts~p~IyAiGD~~~ 314 (466)
T PRK07818 236 VESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYM-RTNVPHIYAIGDVTA 314 (466)
T ss_pred EEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCc-ccCCCCEEEEeecCC
Confidence 88886542 4454 674 689999999999999988642 2345665544433333332 257899999998742
Q ss_pred ----ccccccccceeeehhhccc
Q psy12350 380 ----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 380 ----~~~~~~~~~~~~~a~~~~~ 398 (1129)
++.+. .|++.+|.++.+
T Consensus 315 ~~~l~~~A~--~~g~~aa~~i~g 335 (466)
T PRK07818 315 KLQLAHVAE--AQGVVAAETIAG 335 (466)
T ss_pred CcccHhHHH--HHHHHHHHHHcC
Confidence 23344 788888887764
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-21 Score=231.82 Aligned_cols=295 Identities=15% Similarity=0.164 Sum_probs=171.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccc-cCCccccccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKT-NLPKEIMELSG 86 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~-~~~~~~~~~~d 86 (1129)
..+||+||||||||++||..|++ .|.+|+|+|+.+.+||+|.+ .||. |. ..++..... ...+ +...
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~~~GG~c~n---~gci----P~-K~l~~~a~~~~~~~---~~~~ 69 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAAD--LGLETVCVERYSTLGGVCLN---VGCI----PS-KALLHVAKVIEEAK---ALAE 69 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCcccccccC---CCcc----cH-HHHHHHHHHHHHHh---hhhh
Confidence 35899999999999999999999 67999999998789999983 3432 22 222211000 0001 1111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHh-----------cCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADN-----------FNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL 155 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~-----------~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1129)
+.+.. .....+..++.++.+...++ .++ .+..++ +.. .+..++.+.. .+++...+.
T Consensus 70 ~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~g~-a~~-------~~~~~v~v~~-~~g~~~~~~ 136 (471)
T PRK06467 70 HGIVF--GEPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKV--TVVNGL-GKF-------TGGNTLEVTG-EDGKTTVIE 136 (471)
T ss_pred cCccc--CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEE-EEE-------ccCCEEEEec-CCCceEEEE
Confidence 11100 01122445555554443332 232 333332 211 2334454443 122224578
Q ss_pred ecceeeeEEEEecccCCCCCc-cccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccc
Q psy12350 156 FDLQVRFFLQLMQGHVTLPSK-AEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFE 234 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~~p~~-p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 234 (1129)
|| +|||||| +.|.. |.+++.... ..
T Consensus 137 ~d-----~lViATG--s~p~~~p~~~~~~~~-------------------v~---------------------------- 162 (471)
T PRK06467 137 FD-----NAIIAAG--SRPIQLPFIPHDDPR-------------------IW---------------------------- 162 (471)
T ss_pred cC-----EEEEeCC--CCCCCCCCCCCCCCc-------------------EE----------------------------
Confidence 99 9999999 77764 434331100 00
Q ss_pred cccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC-------------
Q psy12350 235 SFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN------------- 301 (1129)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~------------- 301 (1129)
...+.+..... +++++| ||||++|+|+|..+++.|.+||++++.+.+++..+++
T Consensus 163 ---~~~~~~~~~~~------~~~vvI----iGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~v 229 (471)
T PRK06467 163 ---DSTDALELKEV------PKRLLV----MGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQF 229 (471)
T ss_pred ---ChHHhhccccC------CCeEEE----ECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhce
Confidence 00000100001 223333 8999999999999999999999999998876643321
Q ss_pred CeEEcCCceEEc--CCc--eEEcCC----CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeE
Q psy12350 302 NVVKKPDIAELT--PTG--VRFQDG----SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMC 372 (1129)
Q Consensus 302 ~i~~~~~v~~~~--~~~--v~~~dg----~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~ 372 (1129)
++..+..|++++ +++ +.++++ +++++|.||+|+|++++.++|. ...++.++++..+....++ -.+.|++|
T Consensus 230 ~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~-~t~~p~Vy 308 (471)
T PRK06467 230 NIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQC-RTNVPHIF 308 (471)
T ss_pred EEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCc-ccCCCCEE
Confidence 344566777775 333 444443 3589999999999999998753 3455666655433322222 25789999
Q ss_pred Eeccccc----ccccccccceeeehhhccc
Q psy12350 373 IIGYTYR----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 373 ~~G~~~~----~~~~~~~~~~~~~a~~~~~ 398 (1129)
.+|.... ++.+. .|++.+|.++.+
T Consensus 309 AiGDv~~~~~la~~A~--~eG~~aa~~i~g 336 (471)
T PRK06467 309 AIGDIVGQPMLAHKGV--HEGHVAAEVIAG 336 (471)
T ss_pred EehhhcCCcccHHHHH--HHHHHHHHHHcC
Confidence 9998643 23344 777777777654
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-21 Score=232.95 Aligned_cols=287 Identities=17% Similarity=0.195 Sum_probs=169.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcc---------cCCcCceEecCCCCCCCCCCCCccCcccccccccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQ---------TDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPK 79 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~---------~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~ 79 (1129)
.+||+||||||||+.||+.|++ .|.+|+|+|+ ...+||+|.+ .||. |.+...+.. ....
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~~~~~~~~~~~~~~GGtC~n---~GCi----PsK~l~~aa---~~~~ 146 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASN--FGASAAVCELPFATISSDTLGGVGGTCVL---RGCV----PKKLLVYAS---KYSH 146 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccccccccccCCCccCcccC---cchH----HHHHHHHHH---HHHH
Confidence 4799999999999999999999 6799999996 2568999994 5552 333222221 1111
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHH-----------hcCCcceeEeceeeeeeccccccCCCCceEEecccc
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFAD-----------NFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPR 148 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~-----------~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~ 148 (1129)
.+.....|.+... ...-++...+.++.+...+ +.++ .+..+ +++.++ ..++.+ +
T Consensus 147 ~~~~~~~~g~~~~-~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV--~~i~G-~a~~vd-------~~~V~v----~ 211 (558)
T PLN02546 147 EFEESRGFGWKYE-TEPKHDWNTLIANKNAELQRLTGIYKNILKNAGV--TLIEG-RGKIVD-------PHTVDV----D 211 (558)
T ss_pred HHHhhhhcCcccC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEEe-EEEEcc-------CCEEEE----C
Confidence 1111111211100 0011233444443333222 2222 23322 122222 122322 1
Q ss_pred CccceEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccc
Q psy12350 149 DTVGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVL 228 (1129)
Q Consensus 149 ~~~~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 228 (1129)
...+.|| +|||||| +.|..|++||... + .
T Consensus 212 --G~~~~~D-----~LVIATG--s~p~~P~IpG~~~--v------------~---------------------------- 240 (558)
T PLN02546 212 --GKLYTAR-----NILIAVG--GRPFIPDIPGIEH--A------------I---------------------------- 240 (558)
T ss_pred --CEEEECC-----EEEEeCC--CCCCCCCCCChhh--c------------c----------------------------
Confidence 2346788 9999999 8999998877210 0 0
Q ss_pred hhccccccccccccccc-ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC------
Q psy12350 229 LKIYFESFARCSEDFTE-FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN------ 301 (1129)
Q Consensus 229 ~~~~~~~~~~~~~~~~~-~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~------ 301 (1129)
...+.+.. ...++++| ||||++|+|+|..|+..+.+|+++++.+.+++...++
T Consensus 241 ---------~~~~~l~~~~~~k~V~V-----------IGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~ 300 (558)
T PLN02546 241 ---------DSDAALDLPSKPEKIAI-----------VGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVA 300 (558)
T ss_pred ---------CHHHHHhccccCCeEEE-----------ECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHH
Confidence 00000000 01233443 8999999999999999999999999988765432211
Q ss_pred --------CeEEcCCceEEcC--Cc-e--EEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcc--ccccccccc
Q psy12350 302 --------NVVKKPDIAELTP--TG-V--RFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNV--QPLYKHLIN 365 (1129)
Q Consensus 302 --------~i~~~~~v~~~~~--~~-v--~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~--~~l~~~~~~ 365 (1129)
++..+..+.++++ ++ + .+.+++.+++|.||+|+|++++..+|. +..++.++++.. ++-|.+
T Consensus 301 ~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~--- 377 (558)
T PLN02546 301 EQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSR--- 377 (558)
T ss_pred HHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCce---
Confidence 3455667777753 22 3 334454456899999999999998753 345566654433 333333
Q ss_pred CCCCCeEEeccccc----ccccccccceeeehhhccc
Q psy12350 366 IEHPSMCIIGYTYR----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 366 ~~~p~l~~~G~~~~----~~~~~~~~~~~~~a~~~~~ 398 (1129)
++.|++|.+|.... ++.+. .|++.+|.++.+
T Consensus 378 Ts~p~IYAaGDv~~~~~l~~~A~--~~g~~~a~~i~g 412 (558)
T PLN02546 378 TSVPSIWAVGDVTDRINLTPVAL--MEGGALAKTLFG 412 (558)
T ss_pred eCCCCEEEeeccCCCcccHHHHH--HHHHHHHHHHcC
Confidence 57899999998743 34344 777777777654
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-21 Score=225.75 Aligned_cols=286 Identities=16% Similarity=0.185 Sum_probs=174.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||.+|++ .|++|+|||+.+.+||++.|. +++|
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~--~G~~V~v~e~~~~~GG~l~~g------------------------------ip~~ 186 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAK--MGYDVTIFEALHEPGGVLVYG------------------------------IPEF 186 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCCCeeeec------------------------------CCCc
Confidence 45899999999999999999999 679999999999999999851 1111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
.+ +.+++..+..++.+++++ .+++++.|.. .+.+ .. ......|| +||||
T Consensus 187 ~l---------~~~~~~~~~~~~~~~~gv--~i~~~~~v~~-----------~v~~---~~-~~~~~~~d-----~viiA 235 (464)
T PRK12831 187 RL---------PKETVVKKEIENIKKLGV--KIETNVVVGK-----------TVTI---DE-LLEEEGFD-----AVFIG 235 (464)
T ss_pred cC---------CccHHHHHHHHHHHHcCC--EEEcCCEECC-----------cCCH---HH-HHhccCCC-----EEEEe
Confidence 11 112456666677777777 7888886621 0001 00 01123489 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccc-hhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSE-KYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||. ..|..|++||... .| .++. .++.... ....+. ..+.
T Consensus 236 tGa-~~~~~l~ipG~~~---~g---------------V~~~~~~l~~~~-----------------~~~~~~--~~~~-- 275 (464)
T PRK12831 236 SGA-GLPKFMGIPGENL---NG---------------VFSANEFLTRVN-----------------LMKAYK--PEYD-- 275 (464)
T ss_pred CCC-CCCCCCCCCCcCC---cC---------------cEEHHHHHHHHH-----------------hccccc--cccc--
Confidence 993 2578888887321 11 1111 1110000 000000 0000
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCc-ccccC-------CC--CeEEcCCceEEcC--
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHV-KKLRF-------PN--NVVKKPDIAELTP-- 314 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~-~~~~~-------~~--~i~~~~~v~~~~~-- 314 (1129)
..+..|++|+| ||||++|+|+|..+.+.|.+||+++|.... ++... .+ ++.....+.++.+
T Consensus 276 ---~~~~~gk~VvV----IGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~~~~~i~~~~ 348 (464)
T PRK12831 276 ---TPIKVGKKVAV----VGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLTNPVEILGDE 348 (464)
T ss_pred ---CcccCCCeEEE----ECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEecccceEEEecC
Confidence 00112444444 899999999999999999999999986531 11100 11 3444555666642
Q ss_pred Cc----eEEc------------------CCC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCC
Q psy12350 315 TG----VRFQ------------------DGS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPS 370 (1129)
Q Consensus 315 ~~----v~~~------------------dg~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ 370 (1129)
++ |.+. +|+ ++++|.||+|+|+.++..++....++..+++..+....+.+.++.|+
T Consensus 349 ~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pg 428 (464)
T PRK12831 349 NGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEG 428 (464)
T ss_pred CCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCC
Confidence 22 3331 233 47999999999999998887643556665544333333334467899
Q ss_pred eEEeccccccc--ccccccceeeehhhcccccccc
Q psy12350 371 MCIIGYTYRYP--FLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 371 l~~~G~~~~~~--~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
+|.+|.....| ...+..+|+.+|..+...+.+.
T Consensus 429 VfAaGD~~~g~~~v~~Ai~~G~~AA~~I~~~L~~~ 463 (464)
T PRK12831 429 VFAGGDAVTGAATVILAMGAGKKAAKAIDEYLSKK 463 (464)
T ss_pred EEEeCCCCCCchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999885422 2334488888888777665543
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-21 Score=230.43 Aligned_cols=285 Identities=15% Similarity=0.150 Sum_probs=171.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
|+|+|||||+|||+||..|++.+.+.+|+|||+++.++ |. + ..++...
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~--~--------------------~~~~~~~-------- 48 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FG--A--------------------CGLPYFV-------- 48 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--ee--c--------------------CCCceEe--------
Confidence 48999999999999999999977778999999987542 11 0 0000000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
...+....++..+..+..++.++ +++++++|++|+. +.+.+.+.+...+......|| +||||||
T Consensus 49 ----~~~~~~~~~~~~~~~~~~~~~gv--~~~~~~~V~~id~-----~~~~v~~~~~~~~~~~~~~yd-----~lviAtG 112 (444)
T PRK09564 49 ----GGFFDDPNTMIARTPEEFIKSGI--DVKTEHEVVKVDA-----KNKTITVKNLKTGSIFNDTYD-----KLMIATG 112 (444)
T ss_pred ----ccccCCHHHhhcCCHHHHHHCCC--eEEecCEEEEEEC-----CCCEEEEEECCCCCEEEecCC-----EEEECCC
Confidence 00111222333333444455666 7888999999876 344555543222222223499 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccccc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKD 249 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1129)
+.|..|++||..... ...... +..+....+.+.....+
T Consensus 113 --~~~~~~~i~g~~~~~------------------v~~~~~----------------------~~~~~~l~~~l~~~~~~ 150 (444)
T PRK09564 113 --ARPIIPPIKNINLEN------------------VYTLKS----------------------MEDGLALKELLKDEEIK 150 (444)
T ss_pred --CCCCCCCCCCcCCCC------------------EEEECC----------------------HHHHHHHHHHHhhcCCC
Confidence 788888887632110 000000 00000111111111123
Q ss_pred ceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC---------------CCeEEcCCceEEcC
Q psy12350 250 KYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP---------------NNVVKKPDIAELTP 314 (1129)
Q Consensus 250 ~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~---------------~~i~~~~~v~~~~~ 314 (1129)
+++| ||||++|+|+|..++..+++|+++++.+.+++..++ -++..++.|+++++
T Consensus 151 ~vvV-----------vGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~ 219 (444)
T PRK09564 151 NIVI-----------IGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG 219 (444)
T ss_pred EEEE-----------ECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec
Confidence 4444 899999999999999999999999998866542221 14556778888865
Q ss_pred Cc---eEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc-----------
Q psy12350 315 TG---VRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY----------- 380 (1129)
Q Consensus 315 ~~---v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~----------- 380 (1129)
++ ....++.++++|.||+|+|++++.++++. .++..+++..+....++- ++.|++|.+|.....
T Consensus 220 ~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~-~gl~~~~~g~i~vd~~~~-t~~~~IyA~GD~~~~~~~~~~~~~~~ 297 (444)
T PRK09564 220 EDKVEGVVTDKGEYEADVVIVATGVKPNTEFLED-TGLKTLKNGAIIVDEYGE-TSIENIYAAGDCATIYNIVSNKNVYV 297 (444)
T ss_pred CCcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHh-cCccccCCCCEEECCCcc-cCCCCEEEeeeEEEEEeccCCCeeec
Confidence 43 23345667999999999999999888763 445544433222222221 467889998877432
Q ss_pred cc-cccccceeeehhhcc
Q psy12350 381 PF-LHESCGIKVVNKNVQ 397 (1129)
Q Consensus 381 ~~-~~~~~~~~~~a~~~~ 397 (1129)
|+ ..+..||+.+|.++.
T Consensus 298 ~~~~~A~~qg~~~a~ni~ 315 (444)
T PRK09564 298 PLATTANKLGRMVGENLA 315 (444)
T ss_pred cchHHHHHHHHHHHHHhc
Confidence 11 112266666666665
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-21 Score=228.54 Aligned_cols=304 Identities=14% Similarity=0.134 Sum_probs=171.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.++||+||||||||++||+.|++ .|.+|+|+||++.+||+|.+ .||. |.+...+........+.. .+.++
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~--~g~~v~~ie~~~~~GG~c~n---~Gci----Psk~l~~~a~~~~~~~~~-~~~g~ 84 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAE--HGARVTIIEGADVIGGCCVN---VGCV----PSKILIRAAQLAHQQRSN-PFDGV 84 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCcceeEecc---cccc----ccHHHHHHHHHHHHHhhc-cccCc
Confidence 45899999999999999999999 66899999998899999994 4542 222221111111111110 11111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcC---CcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFN---LRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFL 164 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~---~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 164 (1129)
+. . . .-.+...+..+.+.....+. ....+..+..|+-+...+...+.+.+.+.. .+++...+.|| +|
T Consensus 85 ~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~-~~g~~~~~~~d-----~l 154 (479)
T PRK14727 85 EA--V-A-PSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRL-HDGGERVLAAD-----RC 154 (479)
T ss_pred cc--C-C-CccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEe-CCCceEEEEeC-----EE
Confidence 10 0 0 01234444443333322210 000111111233222222222344555543 22222457899 99
Q ss_pred EEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccc
Q psy12350 165 QLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFT 244 (1129)
Q Consensus 165 vvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 244 (1129)
||||| +.|..|++||..... + + ...+.+.
T Consensus 155 ViATG--s~p~~p~i~G~~~~~-----------------------~----------------------~----~~~~~l~ 183 (479)
T PRK14727 155 LIATG--STPTIPPIPGLMDTP-----------------------Y----------------------W----TSTEALF 183 (479)
T ss_pred EEecC--CCCCCCCCCCcCccc-----------------------e----------------------e----cchHHhc
Confidence 99999 889999887731100 0 0 0011111
Q ss_pred cccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCce
Q psy12350 245 EFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIA 310 (1129)
Q Consensus 245 ~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~ 310 (1129)
.... +++++| ||+|++|+|+|..+++.|.+|+++++.. +++..++. ++..+..|+
T Consensus 184 ~~~~------~k~vvV----IGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~ 252 (479)
T PRK14727 184 SDEL------PASLTV----IGSSVVAAEIAQAYARLGSRVTILARST-LLFREDPLLGETLTACFEKEGIEVLNNTQAS 252 (479)
T ss_pred cccC------CCeEEE----ECCCHHHHHHHHHHHHcCCEEEEEEcCC-CCCcchHHHHHHHHHHHHhCCCEEEcCcEEE
Confidence 0001 223333 8999999999999999999999999853 33322211 345566787
Q ss_pred EEcC--Cce--EEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccccc----c
Q psy12350 311 ELTP--TGV--RFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY----P 381 (1129)
Q Consensus 311 ~~~~--~~v--~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~----~ 381 (1129)
+++. +++ ...+ .++++|.||+|+|..++..+|. +..++..+++..+....++ -+++|++|.+|..... +
T Consensus 253 ~i~~~~~~~~v~~~~-g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~-~Ts~~~IyA~GD~~~~~~~~~ 330 (479)
T PRK14727 253 LVEHDDNGFVLTTGH-GELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAM-ETSAPDIYAAGDCSDLPQFVY 330 (479)
T ss_pred EEEEeCCEEEEEEcC-CeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCe-ecCCCCEEEeeecCCcchhhh
Confidence 7753 333 3334 4689999999999999988753 2345666554433332222 2578999999987532 3
Q ss_pred ccccccceeeehhhcc
Q psy12350 382 FLHESCGIKVVNKNVQ 397 (1129)
Q Consensus 382 ~~~~~~~~~~~a~~~~ 397 (1129)
.+. .|++.+|.++.
T Consensus 331 ~A~--~~G~~aa~~i~ 344 (479)
T PRK14727 331 VAA--AAGSRAGINMT 344 (479)
T ss_pred HHH--HHHHHHHHHHc
Confidence 333 66666666654
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-21 Score=222.56 Aligned_cols=273 Identities=16% Similarity=0.227 Sum_probs=175.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
++|+|||||+||+++|+.|++.+++.+|+|+++++.. .|.. ..++..+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~----------------------~y~~--~~l~~~~~------- 51 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD----------------------EYNK--PDLSHVFS------- 51 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC----------------------CcCc--CcCcHHHh-------
Confidence 5899999999999999999998888999999996631 1110 01111110
Q ss_pred CCCCCCCCCCHHHHHH-HHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 90 KGHPDKSYIAANDVLE-YLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~-yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
.....+++.. ..+++++++++ .++++++|+++++ +.+.+.. + .....|| +|||||
T Consensus 52 ------~~~~~~~~~~~~~~~~~~~~gv--~~~~~~~V~~id~-----~~~~v~~----~--~~~~~yd-----~LVlAT 107 (377)
T PRK04965 52 ------QGQRADDLTRQSAGEFAEQFNL--RLFPHTWVTDIDA-----EAQVVKS----Q--GNQWQYD-----KLVLAT 107 (377)
T ss_pred ------CCCCHHHhhcCCHHHHHHhCCC--EEECCCEEEEEEC-----CCCEEEE----C--CeEEeCC-----EEEECC
Confidence 0112233333 24566677776 7888999998876 2333332 1 2356799 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|..|++||... .+ .+... .. +......+ ...
T Consensus 108 G--~~~~~p~i~G~~~-v~-------------~~~~~--~~--------------------------~~~~~~~~--~~~ 141 (377)
T PRK04965 108 G--ASAFVPPIPGREL-ML-------------TLNSQ--QE--------------------------YRAAETQL--RDA 141 (377)
T ss_pred C--CCCCCCCCCCCce-EE-------------EECCH--HH--------------------------HHHHHHHh--hcC
Confidence 9 7888888877311 00 00000 00 00000001 012
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC---------------CeEEcCCceEEc
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------------NVVKKPDIAELT 313 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------------~i~~~~~v~~~~ 313 (1129)
++++| ||||++|+|+|..|++.+.+|+++++.+.+++...+. ++.....|++++
T Consensus 142 ~~vvV-----------iGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~ 210 (377)
T PRK04965 142 QRVLV-----------VGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLE 210 (377)
T ss_pred CeEEE-----------ECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEE
Confidence 34444 7999999999999999999999999988765432221 345567788887
Q ss_pred CC----ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc-----cc-c
Q psy12350 314 PT----GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY-----PF-L 383 (1129)
Q Consensus 314 ~~----~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~-----~~-~ 383 (1129)
.+ .+.+.||+++++|.||+|+|++++..+++ ..++..+....++-+.+ +++|++|++|..... |. .
T Consensus 211 ~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~-~~gl~~~~gi~vd~~l~---ts~~~VyA~GD~a~~~~~~~~~~~ 286 (377)
T PRK04965 211 KTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALAR-RAGLAVNRGIVVDSYLQ---TSAPDIYALGDCAEINGQVLPFLQ 286 (377)
T ss_pred ccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHH-HCCCCcCCCEEECCCcc---cCCCCEEEeeecEeECCceeehHH
Confidence 54 27788999999999999999999988765 34454433222222222 468999999987421 22 1
Q ss_pred ccccceeeehhhccc
Q psy12350 384 HESCGIKVVNKNVQP 398 (1129)
Q Consensus 384 ~~~~~~~~~a~~~~~ 398 (1129)
....|++.+|+++.+
T Consensus 287 ~a~~~g~~~a~n~~g 301 (377)
T PRK04965 287 PIQLSAMALAKNLLG 301 (377)
T ss_pred HHHHHHHHHHHHhcC
Confidence 123788888998876
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-21 Score=224.72 Aligned_cols=298 Identities=15% Similarity=0.154 Sum_probs=178.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||+||||||+|.+||..+ .|.+|+|+|+ +.+||+|.+ .||. |.+...+..-.....+. .+.|..
T Consensus 2 yD~vVIG~G~~g~~aa~~~----~G~~V~lie~-~~~GGtC~n---~GCi----PsK~l~~~a~~~~~~~~---~~~~g~ 66 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF----ADKRIAIVEK-GTFGGTCLN---VGCI----PTKMFVYAADVARTIRE---AARLGV 66 (451)
T ss_pred CCEEEECCCHHHHHHHHHH----CCCeEEEEeC-CCCCCcccC---cCcc----hhHHHHHHHHHHHHHHH---HHhCCc
Confidence 7999999999999998763 3689999998 569999994 4542 33322222111111111 111111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCc-ceeE-e-ceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLR-NLCL-V-NKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~-~~i~-~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
.. ...-.+..++.++.+...+++.-. .... + ...|+-+.......+..++.+. + ...+.|| +|||
T Consensus 67 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~---~--g~~~~~d-----~lVi 134 (451)
T PRK07846 67 DA--ELDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTG---D--GEEITAD-----QVVI 134 (451)
T ss_pred cC--CCCcCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEEC---C--CCEEEeC-----EEEE
Confidence 10 111236677777776665554110 0111 1 1123323222222234444442 1 2356789 9999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||| +.|..|++||..... .++. .....+. .
T Consensus 135 ATG--s~p~~p~i~g~~~~~------------------~~~~-----------------------------~~~~~l~-~ 164 (451)
T PRK07846 135 AAG--SRPVIPPVIADSGVR------------------YHTS-----------------------------DTIMRLP-E 164 (451)
T ss_pred cCC--CCCCCCCCCCcCCcc------------------EEch-----------------------------HHHhhhh-h
Confidence 999 889999887621000 0000 0000010 0
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC-----------C--CeEEcCCceEEc
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP-----------N--NVVKKPDIAELT 313 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~-----------~--~i~~~~~v~~~~ 313 (1129)
..++++ | ||||++|+|+|..|++.|.+|++++|.+.+++...+ . ++..+..|++++
T Consensus 165 ~~~~vv-------I----IGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~~~~v~i~~~~~v~~i~ 233 (451)
T PRK07846 165 LPESLV-------I----VGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELASKRWDVRLGRNVVGVS 233 (451)
T ss_pred cCCeEE-------E----ECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHhcCeEEEeCCEEEEEE
Confidence 113333 3 899999999999999999999999998876543221 1 345567788886
Q ss_pred CC--c--eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccccc----cccc
Q psy12350 314 PT--G--VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY----PFLH 384 (1129)
Q Consensus 314 ~~--~--v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~----~~~~ 384 (1129)
++ + +.+.+|+++++|.||+|+|.+++.++|. +..++..+++..+....++- ++.|++|.+|..... +.+.
T Consensus 234 ~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~-Ts~p~IyA~GD~~~~~~l~~~A~ 312 (451)
T PRK07846 234 QDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQR-TSAEGVFALGDVSSPYQLKHVAN 312 (451)
T ss_pred EcCCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcc-cCCCCEEEEeecCCCccChhHHH
Confidence 43 3 5667888999999999999999999974 34567766554333323322 689999999987532 2244
Q ss_pred cccceeeehhhccc
Q psy12350 385 ESCGIKVVNKNVQP 398 (1129)
Q Consensus 385 ~~~~~~~~a~~~~~ 398 (1129)
.|++.+|.++.+
T Consensus 313 --~~g~~~a~ni~~ 324 (451)
T PRK07846 313 --HEARVVQHNLLH 324 (451)
T ss_pred --HHHHHHHHHHcC
Confidence 777777777753
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=211.14 Aligned_cols=285 Identities=15% Similarity=0.218 Sum_probs=178.6
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSG 86 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d 86 (1129)
...++|+|||||||||+||..|++ .++++++||+ ...||.+..... ...++.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~--~g~~~~~ie~-~~~gg~~~~~~~-------------------------~~~~~~ 55 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITG-MEKGGQLTTTTE-------------------------VENWPG 55 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH--CCCCeEEEEe-ecCCCceecCce-------------------------ECCCCC
Confidence 346899999999999999999999 5689999996 468998874110 111111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
.+...+..++.++++++++.++. .++++ +|+.|+.. .+.|.++ . . ...+.|| +||+
T Consensus 56 -------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~v~~v~~~---~~~~~v~--~--~--~~~~~~d-----~vil 111 (321)
T PRK10262 56 -------DPNDLTGPLLMERMHEHATKFET--EIIFD-HINKVDLQ---NRPFRLT--G--D--SGEYTCD-----ALII 111 (321)
T ss_pred -------CCCCCCHHHHHHHHHHHHHHCCC--EEEee-EEEEEEec---CCeEEEE--e--c--CCEEEEC-----EEEE
Confidence 11234567889999999998876 55554 45555542 1223332 1 1 1246789 9999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||| +.|+.|++||.. .+.++ +.+... ..+.+ ..
T Consensus 112 AtG--~~~~~~~i~g~~--~~~~~-------------~v~~~~-----------------------------~~~~~-~~ 144 (321)
T PRK10262 112 ATG--ASARYLGLPSEE--AFKGR-------------GVSACA-----------------------------TCDGF-FY 144 (321)
T ss_pred CCC--CCCCCCCCCCHH--HcCCC-------------cEEEee-----------------------------cCCHH-Hc
Confidence 999 778888888732 12111 000000 00011 01
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc---------cC-CC--CeEEcCCceEEcC
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL---------RF-PN--NVVKKPDIAELTP 314 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~---------~~-~~--~i~~~~~v~~~~~ 314 (1129)
.+++++| ||+|++|+|+|..|++.+++|++++|.+.+... .+ .. ++..+..|+++++
T Consensus 145 ~g~~vvV-----------vGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~ 213 (321)
T PRK10262 145 RNQKVAV-----------IGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTG 213 (321)
T ss_pred CCCEEEE-----------ECCCHHHHHHHHHHHhhCCEEEEEEECCccCCCHHHHHHHHhhccCCCeEEEeCCEEEEEEc
Confidence 2344444 899999999999999999999999998754211 00 11 3455677888876
Q ss_pred C-----ceEEcCC------CEeecCEEEEcccccccCCCCCCCCCeEeecCc-cccccc--ccccCCCCCeEEecccccc
Q psy12350 315 T-----GVRFQDG------SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKN-VQPLYK--HLINIEHPSMCIIGYTYRY 380 (1129)
Q Consensus 315 ~-----~v~~~dg------~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~-~~~l~~--~~~~~~~p~l~~~G~~~~~ 380 (1129)
+ +|.++++ +++++|.||+|+|++++..++... +..+... ..+-+. .-..++.|++|.+|.....
T Consensus 214 ~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~--l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~ 291 (321)
T PRK10262 214 DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQ--LELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDH 291 (321)
T ss_pred CCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhcc--ccccCCEEEECCCCcccccccCCCCEEECeeccCC
Confidence 5 3666543 368999999999999998876532 2222111 111100 0123689999999988643
Q ss_pred ---cccccccceeeehhhcccccccc
Q psy12350 381 ---PFLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 381 ---~~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
+......++..+|..+...+.++
T Consensus 292 ~~~~~~~A~~~g~~Aa~~~~~~l~~~ 317 (321)
T PRK10262 292 IYRQAITSAGTGCMAALDAERYLDGL 317 (321)
T ss_pred CcceEEEEehhHHHHHHHHHHHHHhc
Confidence 23444477766666666555444
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-20 Score=225.13 Aligned_cols=295 Identities=16% Similarity=0.210 Sum_probs=173.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccc-cccCCccccccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSL-KTNLPKEIMELSG 86 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l-~~~~~~~~~~~~d 86 (1129)
..+||+||||||||++||..|++ .|++|+|+||.. +||+|.+ .+|. |.+ .++... .....+ .+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~--~G~~V~liE~~~-~GG~c~~---~gci----P~k-~l~~~~~~~~~~~---~~~~ 68 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQ--LGLKVAIVEKEK-LGGTCLN---RGCI----PSK-ALLHAAERADEAR---HSED 68 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHH--CCCcEEEEeccc-cccceee---cccC----CcH-HHHHhhhHHHHHH---HHHh
Confidence 35899999999999999999999 679999999976 9999984 3432 211 111100 000011 1112
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHh-----------cCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADN-----------FNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL 155 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~-----------~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1129)
|.+.. ....+...++.+|.+...++ .++ .++.++ ++.+ +..++++... .+ .....
T Consensus 69 ~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~-~~~~-------~~~~~~v~~~-~~-~~~~~ 134 (462)
T PRK06416 69 FGIKA--ENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKV--DIIRGE-AKLV-------DPNTVRVMTE-DG-EQTYT 134 (462)
T ss_pred cCccc--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEE-EEEc-------cCCEEEEecC-CC-cEEEE
Confidence 21110 11134566777775554433 333 344432 2222 2233444321 11 24578
Q ss_pred ecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccc
Q psy12350 156 FDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFES 235 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 235 (1129)
|| +|||||| +.|..| ||.. ..+. ..++.
T Consensus 135 ~d-----~lViAtG--s~p~~~--pg~~---~~~~-------------~v~~~--------------------------- 162 (462)
T PRK06416 135 AK-----NIILATG--SRPREL--PGIE---IDGR-------------VIWTS--------------------------- 162 (462)
T ss_pred eC-----EEEEeCC--CCCCCC--CCCC---CCCC-------------eEEcc---------------------------
Confidence 99 9999999 667554 2310 0000 00000
Q ss_pred ccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------
Q psy12350 236 FARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN-------------- 301 (1129)
Q Consensus 236 ~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~-------------- 301 (1129)
.....+. ...++++ | ||||++|+|+|..|++.|.+||+++|.+.+++...++
T Consensus 163 --~~~~~~~-~~~~~vv-------V----vGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV 228 (462)
T PRK06416 163 --DEALNLD-EVPKSLV-------V----IGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGI 228 (462)
T ss_pred --hHhhCcc-ccCCeEE-------E----ECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCC
Confidence 0000000 0113333 3 8999999999999999999999999988776542221
Q ss_pred CeEEcCCceEEcCC--c--eEEcCC---CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEE
Q psy12350 302 NVVKKPDIAELTPT--G--VRFQDG---SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCI 373 (1129)
Q Consensus 302 ~i~~~~~v~~~~~~--~--v~~~dg---~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~ 373 (1129)
++..+..|++++++ + +.+++| +++++|.||+|+|.+++..++. +..++..+ +..+....++- ++.|++|.
T Consensus 229 ~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~-t~~~~VyA 306 (462)
T PRK06416 229 KIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLR-TNVPNIYA 306 (462)
T ss_pred EEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCc-cCCCCEEE
Confidence 45567778888643 3 445566 6789999999999999998863 24455555 33333323322 67899999
Q ss_pred ecccccc-cc-cccccceeeehhhccc
Q psy12350 374 IGYTYRY-PF-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 374 ~G~~~~~-~~-~~~~~~~~~~a~~~~~ 398 (1129)
+|..... ++ .....|++.+|.++.+
T Consensus 307 iGD~~~~~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 307 IGDIVGGPMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred eeecCCCcchHHHHHHHHHHHHHHHcC
Confidence 9987532 22 1223787777777764
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=224.22 Aligned_cols=301 Identities=18% Similarity=0.211 Sum_probs=174.3
Q ss_pred CCCCCCCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCcc
Q psy12350 1 MVQDKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKE 80 (1129)
Q Consensus 1 m~~~~~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~ 80 (1129)
||++ ..++|+||||||||++||..|++ .|.+|+|||++ .+||+|.+ .||. |.+ .++...+......
T Consensus 1 ~~~~---~~~dviVIGaG~aG~~aA~~l~~--~g~~v~lie~~-~~GGtc~n---~Gci----Psk-~l~~~a~~~~~~~ 66 (468)
T PRK14694 1 MMSD---NNLHIAVIGSGGSAMAAALKATE--RGARVTLIERG-TIGGTCVN---IGCV----PSK-IMIRAAHIAHLRR 66 (468)
T ss_pred CCCC---CcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEEcc-ccccceec---CCcc----ccH-HHHHHHHHHHHHh
Confidence 6654 45899999999999999999999 56899999995 79999984 5552 222 2222111111000
Q ss_pred ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcC-------Cc--ceeEe-ceeeeeeccccccCCCCceEEeccccCc
Q psy12350 81 IMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFN-------LR--NLCLV-NKNVQPLYKHLINIEHPSMCIIGIPRDT 150 (1129)
Q Consensus 81 ~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~-------~~--~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 150 (1129)
...+ ++.++. ...-++..++.++.++..+.+. +. ..+.+ .-+|+.++. +.|.+++. ++.
T Consensus 67 ~~~~-~~g~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~-----~~~~V~~~---~g~ 135 (468)
T PRK14694 67 ESPF-DDGLSA--QAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDE-----RTLTVTLN---DGG 135 (468)
T ss_pred hccc-cCCccc--CCCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecC-----CEEEEEec---CCC
Confidence 0010 011110 0112356667766665544331 10 01111 223444432 33444432 222
Q ss_pred cceEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchh
Q psy12350 151 VGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLK 230 (1129)
Q Consensus 151 ~~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 230 (1129)
.....|| +|||||| +.|..|++||.....+ ..+
T Consensus 136 ~~~~~~d-----~lViATG--s~p~~p~i~G~~~~~~-----------------~~~----------------------- 168 (468)
T PRK14694 136 EQTVHFD-----RAFIGTG--ARPAEPPVPGLAETPY-----------------LTS----------------------- 168 (468)
T ss_pred eEEEECC-----EEEEeCC--CCCCCCCCCCCCCCce-----------------Ecc-----------------------
Confidence 2457899 9999999 8899998877321000 000
Q ss_pred cccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC----------
Q psy12350 231 IYFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP---------- 300 (1129)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~---------- 300 (1129)
.....+. ...++++| ||+|++|+|+|..|++.+.+|+++++. ++++...+
T Consensus 169 -------~~~~~l~-~~~~~vvV-----------iG~G~~G~E~A~~l~~~g~~Vtlv~~~-~~l~~~~~~~~~~l~~~l 228 (468)
T PRK14694 169 -------TSALELD-HIPERLLV-----------IGASVVALELAQAFARLGSRVTVLARS-RVLSQEDPAVGEAIEAAF 228 (468)
T ss_pred -------hhhhchh-cCCCeEEE-----------ECCCHHHHHHHHHHHHcCCeEEEEECC-CCCCCCCHHHHHHHHHHH
Confidence 0000010 01233333 899999999999999999999999875 33332211
Q ss_pred ----CCeEEcCCceEEcCC--ceEE-cCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeE
Q psy12350 301 ----NNVVKKPDIAELTPT--GVRF-QDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMC 372 (1129)
Q Consensus 301 ----~~i~~~~~v~~~~~~--~v~~-~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~ 372 (1129)
-++..+..|++++.+ .+.+ .++.++++|.||+|+|.+++..++. ...++..+ +..+....++ -++.|++|
T Consensus 229 ~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~-~G~i~vd~~~-~Ts~~~Iy 306 (468)
T PRK14694 229 RREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVETE-RGAIRIDEHL-QTTVSGIY 306 (468)
T ss_pred HhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCCCCchhcCcccC-CCeEeeCCCc-ccCCCCEE
Confidence 145556778888643 2333 2445799999999999999998863 23444432 2222222222 25789999
Q ss_pred Eecccccc----cccccccceeeehhhcc
Q psy12350 373 IIGYTYRY----PFLHESCGIKVVNKNVQ 397 (1129)
Q Consensus 373 ~~G~~~~~----~~~~~~~~~~~~a~~~~ 397 (1129)
.+|..... +.+. .|++.+|.++.
T Consensus 307 A~GD~~~~~~~~~~A~--~~G~~aa~~i~ 333 (468)
T PRK14694 307 AAGDCTDQPQFVYVAA--AGGSRAAINMT 333 (468)
T ss_pred EEeecCCCcccHHHHH--HHHHHHHHHhc
Confidence 99987532 3333 67777777765
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-21 Score=226.72 Aligned_cols=288 Identities=15% Similarity=0.188 Sum_probs=169.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCccccccc-ccCCccccccCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLK-TNLPKEIMELSGYH 88 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~-~~~~~~~~~~~d~~ 88 (1129)
+||+||||||||++||.+|++ .|.+|+|+||+. +||+|.+ .||. |.+ .++.... .+..+. .. |.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~--~g~~v~lie~~~-~GG~c~n---~gci----Psk-~l~~~~~~~~~~~~-~~---~g 65 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAE--LGASVAMVERGP-LGGTCVN---VGCV----PSK-MLLRAAEVAHYARK-PP---FG 65 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCc-ccCCeee---ecEE----ccH-HHHHHHHHHHHhhc-cC---cc
Confidence 589999999999999999999 669999999965 9999984 4442 222 1121111 111111 01 11
Q ss_pred CCCCCCCCCCCHHHHHHHHH------------HHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEe
Q psy12350 89 HKGHPDKSYIAANDVLEYLN------------DFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLF 156 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~------------~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1129)
... ....++..++..+.+ ...++.++ .+..++ +..+ +..++.+. .+ .....|
T Consensus 66 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g~-~~~~-------~~~~v~v~---~g-~~~~~~ 129 (463)
T TIGR02053 66 GLA--ATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGV--DYLRGR-ARFK-------DPKTVKVD---LG-REVRGA 129 (463)
T ss_pred ccc--CCCccCHHHHHHHHHHHHHHHhhhhHHHHHHhCCc--EEEEEE-EEEc-------cCCEEEEc---CC-eEEEEe
Confidence 100 001122333333222 22333333 333332 2211 22334332 11 224568
Q ss_pred cceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 157 DLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 157 d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
| +|||||| +.|..|++||.....+ .
T Consensus 130 ~-----~lIiATG--s~p~~p~i~G~~~~~~------------------~------------------------------ 154 (463)
T TIGR02053 130 K-----RFLIATG--ARPAIPPIPGLKEAGY------------------L------------------------------ 154 (463)
T ss_pred C-----EEEEcCC--CCCCCCCCCCcccCce------------------E------------------------------
Confidence 8 9999999 8899998877321100 0
Q ss_pred ccccccccc-ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------
Q psy12350 237 ARCSEDFTE-FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN-------------- 301 (1129)
Q Consensus 237 ~~~~~~~~~-~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~-------------- 301 (1129)
...+.+.. ...++++| ||+|++|+|+|..|++.|.+||++++.+.+++...++
T Consensus 155 -~~~~~~~~~~~~~~vvI-----------IGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV 222 (463)
T TIGR02053 155 -TSEEALALDRIPESLAV-----------IGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGI 222 (463)
T ss_pred -CchhhhCcccCCCeEEE-----------ECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCC
Confidence 00000000 00133333 8999999999999999999999999998776543221
Q ss_pred CeEEcCCceEEcCC--c--eEEcC---CCEeecCEEEEcccccccCCCC-CCCCCeEeecCcccccccccccCCCCCeEE
Q psy12350 302 NVVKKPDIAELTPT--G--VRFQD---GSYEQVDIILYCTGYTYRYPFL-HESCGIKVVNKNVQPLYKHLINIEHPSMCI 373 (1129)
Q Consensus 302 ~i~~~~~v~~~~~~--~--v~~~d---g~~~~~D~VI~atG~~~~~~~l-~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~ 373 (1129)
++..++.|++++.+ . +.+.+ ++++++|.||+|+|.+++.+.| -+..++..+++..+....++ -++.|++|.
T Consensus 223 ~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~Ts~~~VyA 301 (463)
T TIGR02053 223 EVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETL-RTSNPGIYA 301 (463)
T ss_pred EEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCc-cCCCCCEEE
Confidence 45556778888643 2 44432 3568999999999999998843 23455666554433333222 257899999
Q ss_pred ecccccc----cccccccceeeehhhccc
Q psy12350 374 IGYTYRY----PFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 374 ~G~~~~~----~~~~~~~~~~~~a~~~~~ 398 (1129)
+|..... +.+. .|++.+|.++.+
T Consensus 302 iGD~~~~~~~~~~A~--~~g~~aa~ni~~ 328 (463)
T TIGR02053 302 AGDVTGGLQLEYVAA--KEGVVAAENALG 328 (463)
T ss_pred eeecCCCcccHhHHH--HHHHHHHHHhcC
Confidence 9987532 2344 788888887764
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.6e-21 Score=224.43 Aligned_cols=262 Identities=14% Similarity=0.172 Sum_probs=156.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC-cCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN-VGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~-~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.+||+||||||||++||..|++ .|++|+|+||++. +||+|.+ .+|. |.+...+.. ..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~--~g~~V~liE~~~~~~GG~c~~---~gci----P~k~~~~~~-~~------------ 60 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS--AGKKVALVEESKAMYGGTCIN---IGCI----PTKTLLVAA-EK------------ 60 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh--CCCEEEEEecCCcccceeeec---Cccc----cchHhhhhh-hc------------
Confidence 4899999999999999999999 6699999999864 7999983 3332 111111110 00
Q ss_pred CCCCCCCCCCCCHHHHHHHHHH-----------HHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLND-----------FADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLF 156 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~-----------~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1129)
-.+..++.++.+. ...+.++ .+..++. . ..+..++.+.. .+....+.|
T Consensus 61 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~g~~-~-------~~~~~~v~v~~--~~~~~~~~~ 119 (438)
T PRK07251 61 ---------NLSFEQVMATKNTVTSRLRGKNYAMLAGSGV--DLYDAEA-H-------FVSNKVIEVQA--GDEKIELTA 119 (438)
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEE-E-------EccCCEEEEee--CCCcEEEEc
Confidence 0112223222221 1222222 2332221 1 11233444432 122235678
Q ss_pred cceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 157 DLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 157 d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
| +|||||| +.|..|++||... .++ ....
T Consensus 120 d-----~vViATG--s~~~~p~i~G~~~--~~~---------------v~~~---------------------------- 147 (438)
T PRK07251 120 E-----TIVINTG--AVSNVLPIPGLAD--SKH---------------VYDS---------------------------- 147 (438)
T ss_pred C-----EEEEeCC--CCCCCCCCCCcCC--CCc---------------EEch----------------------------
Confidence 9 9999999 7888888877310 000 0000
Q ss_pred cccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------C
Q psy12350 237 ARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------N 302 (1129)
Q Consensus 237 ~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~ 302 (1129)
.....+. ...++++ | ||||++|+|+|..+++.|.+|++++|++.+++...+. +
T Consensus 148 -~~~~~~~-~~~~~vv-------I----IGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~ 214 (438)
T PRK07251 148 -TGIQSLE-TLPERLG-------I----IGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGIT 214 (438)
T ss_pred -HHHhcch-hcCCeEE-------E----ECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCE
Confidence 0000010 0123333 3 8999999999999999999999999988776543221 3
Q ss_pred eEEcCCceEEcCC--ce-EEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 303 VVKKPDIAELTPT--GV-RFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 303 i~~~~~v~~~~~~--~v-~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
+..+..|++++.+ .+ ...+|+++++|.||+|+|.+++.+.+. +..++..+.+..+....++ ..+.|++|.+|...
T Consensus 215 i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~-~t~~~~IyaiGD~~ 293 (438)
T PRK07251 215 FLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYC-QTSVPGVFAVGDVN 293 (438)
T ss_pred EEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCc-ccCCCCEEEeeecC
Confidence 4556678888643 33 334677899999999999999987653 1233444444333333322 24789999999864
Q ss_pred c
Q psy12350 379 R 379 (1129)
Q Consensus 379 ~ 379 (1129)
.
T Consensus 294 ~ 294 (438)
T PRK07251 294 G 294 (438)
T ss_pred C
Confidence 3
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.4e-21 Score=223.22 Aligned_cols=299 Identities=13% Similarity=0.126 Sum_probs=181.9
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSG 86 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d 86 (1129)
.++++|+|||||+||+.+|+.|.. .+++|+|+|+++.. .|.. .++....
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~--~~~~ItlI~~~~~~----------------------~~~~---~l~~~~~---- 56 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDP--KKYNITVISPRNHM----------------------LFTP---LLPQTTT---- 56 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCc--CCCeEEEEcCCCCc----------------------chhh---hHHHhcc----
Confidence 345799999999999999999976 56899999997631 1111 1111110
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEecccc-----CccceEEecceee
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPR-----DTVGFYLFDLQVR 161 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~d~~~~ 161 (1129)
...+.+++..-++..++.++. ++ ...+|+.|+. +...+.+..... +....+.||
T Consensus 57 ---------g~~~~~~~~~~~~~~~~~~~~--~~-i~~~V~~Id~-----~~~~v~~~~~~~~~~~~~~g~~i~yD---- 115 (424)
T PTZ00318 57 ---------GTLEFRSICEPVRPALAKLPN--RY-LRAVVYDVDF-----EEKRVKCGVVSKSNNANVNTFSVPYD---- 115 (424)
T ss_pred ---------cCCChHHhHHHHHHHhccCCe--EE-EEEEEEEEEc-----CCCEEEEecccccccccCCceEecCC----
Confidence 011223344334555555443 22 3568888876 344444421111 223467899
Q ss_pred eEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccc
Q psy12350 162 FFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSE 241 (1129)
Q Consensus 162 ~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 241 (1129)
+|||||| +.|..|++||..+..+.. .+..++..+....... ++.. ..++
T Consensus 116 -~LViAtG--s~~~~~~ipG~~e~~~~~----~~~~~a~~~~~~l~~~-----------------------~~~~-~~~~ 164 (424)
T PTZ00318 116 -KLVVAHG--ARPNTFNIPGVEERAFFL----KEVNHARGIRKRIVQC-----------------------IERA-SLPT 164 (424)
T ss_pred -EEEECCC--cccCCCCCCCHHHcCCCC----CCHHHHHHHHHHHHHH-----------------------HHHh-cCCC
Confidence 9999999 888888888843321111 0111111110000000 0000 0000
Q ss_pred -cc-ccccccceeEeeceeeeecCCCCCCCCcccchhhhccc--------------ccEEEEccccCCcccccCC-----
Q psy12350 242 -DF-TEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTE--------------ATTVFLSHHSEHVKKLRFP----- 300 (1129)
Q Consensus 242 -~~-~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~--------------~~~V~lv~r~~~~~~~~~~----- 300 (1129)
+. ...+.++++| ||||++|+|+|..|++. +.+|+|+++.+.+++...+
T Consensus 165 ~~~~~~~~~~~vvV-----------vGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~ 233 (424)
T PTZ00318 165 TSVEERKRLLHFVV-----------VGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKY 233 (424)
T ss_pred CChHHHhccCEEEE-----------ECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHH
Confidence 00 0011124444 79999999999998863 6889999998877653211
Q ss_pred ---------CCeEEcCCceEEcCCceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCe
Q psy12350 301 ---------NNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSM 371 (1129)
Q Consensus 301 ---------~~i~~~~~v~~~~~~~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l 371 (1129)
-++..+..|++++++.|+++||+++++|.||+|+|.+++ +++. .+++..++++.+....++-.+++|++
T Consensus 234 ~~~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~-~~~~-~~~l~~~~~G~I~Vd~~l~~~~~~~I 311 (424)
T PTZ00318 234 GQRRLRRLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPG-PLTK-QLKVDKTSRGRISVDDHLRVKPIPNV 311 (424)
T ss_pred HHHHHHHCCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCc-chhh-hcCCcccCCCcEEeCCCcccCCCCCE
Confidence 145667889999988999999999999999999999987 5655 34455444444433333333678889
Q ss_pred EEeccccc---------ccccccccceeeehhhcccccccc
Q psy12350 372 CIIGYTYR---------YPFLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 372 ~~~G~~~~---------~~~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
|.+|.... ++.+. +||+.+|.++.+.+.++
T Consensus 312 fAiGD~a~~~~~~~~~~~~~A~--~qg~~~A~ni~~~l~g~ 350 (424)
T PTZ00318 312 FALGDCAANEERPLPTLAQVAS--QQGVYLAKEFNNELKGK 350 (424)
T ss_pred EEEeccccCCCCCCCCchHHHH--HHHHHHHHHHHHHhcCC
Confidence 99987653 12244 89999999999887765
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=224.08 Aligned_cols=111 Identities=15% Similarity=0.284 Sum_probs=79.5
Q ss_pred CCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCceEEcCC---c--eEEcCC-CE
Q psy12350 265 AANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAELTPT---G--VRFQDG-SY 324 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~~~~---~--v~~~dg-~~ 324 (1129)
||||++|+|+|..++..|.+||++++.+.+++..+++ ++..+..|.+++++ + +.+.++ ++
T Consensus 243 IGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~ 322 (561)
T PTZ00058 243 AGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKY 322 (561)
T ss_pred ECCcHHHHHHHHHHHHcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEE
Confidence 8999999999999999999999999998776543321 45566778888643 2 344454 46
Q ss_pred eecCEEEEcccccccCCCCCCC-CCeEeecCcc--cccccccccCCCCCeEEeccccc
Q psy12350 325 EQVDIILYCTGYTYRYPFLHES-CGIKVVNKNV--QPLYKHLINIEHPSMCIIGYTYR 379 (1129)
Q Consensus 325 ~~~D~VI~atG~~~~~~~l~~~-~~~~~~~~~~--~~l~~~~~~~~~p~l~~~G~~~~ 379 (1129)
+++|.||+|+|.+++..+|..+ .++.. ++.. ++-|.+ ++.|++|.+|....
T Consensus 323 i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~-~~G~I~VDe~lq---Ts~p~IYA~GDv~~ 376 (561)
T PTZ00058 323 EHFDYVIYCVGRSPNTEDLNLKALNIKT-PKGYIKVDDNQR---TSVKHIYAVGDCCM 376 (561)
T ss_pred EECCEEEECcCCCCCccccCccccceec-CCCeEEECcCCc---cCCCCEEEeEeccC
Confidence 8999999999999999887532 22222 2222 233332 67899999998754
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.6e-21 Score=224.43 Aligned_cols=304 Identities=16% Similarity=0.172 Sum_probs=176.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC--------CcCceEecCCCCCCCCCCCCccCccccccc-ccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD--------NVGGTWVYTEQTGRDQYGLPVHSSMYKSLK-TNLPK 79 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~--------~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~-~~~~~ 79 (1129)
.+||+||||||||+.||..+++ .|.+|+|+|+.. .+||+|.+ .||. |.+ .++.... ....+
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~--~G~~v~lie~~~~~~~~~~~~~GGtc~n---~GCi----PsK-~l~~~a~~~~~~~ 71 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAD--YGAKVMLLDFVTPTPLGTRWGIGGTCVN---VGCI----PKK-LMHQAALLGQALK 71 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCCCcceeccccccc---cCcC----chh-HHHHHHHHHHHHh
Confidence 3799999999999999999999 669999999731 58999993 4542 322 2222111 11111
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEe-ceeeeeeccccccCCCCceEEeccccCccceEEecc
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLV-NKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDL 158 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 158 (1129)
. ...|.+... ...-.+...+.++.++..+++.-...-.+ ...|+-++..+...+..++.+.. .++....+.||
T Consensus 72 ~---~~~~g~~~~-~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~-~~g~~~~~~~d- 145 (484)
T TIGR01438 72 D---SRNYGWNVE-ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATN-KKGKEKIYSAE- 145 (484)
T ss_pred h---hhhcCcccC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEec-cCCCceEEEeC-
Confidence 1 111111100 00123455666665555544320000011 12333343333333444555543 12223457899
Q ss_pred eeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccc
Q psy12350 159 QVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFAR 238 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 238 (1129)
+|||||| +.|..|++||..+..+ .+.. ...
T Consensus 146 ----~lVIATG--s~p~~p~ipG~~~~~~------------------~~~~--------------------------~~~ 175 (484)
T TIGR01438 146 ----RFLIATG--ERPRYPGIPGAKELCI------------------TSDD--------------------------LFS 175 (484)
T ss_pred ----EEEEecC--CCCCCCCCCCccceee------------------cHHH--------------------------hhc
Confidence 9999999 8899998877311000 0000 000
Q ss_pred cccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeE
Q psy12350 239 CSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVV 304 (1129)
Q Consensus 239 ~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~ 304 (1129)
.. . ..++++| ||||++|+|+|..|++.|.+||+++|. .+++..+++ ++.
T Consensus 176 ~~-~----~~~~vvI-----------IGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~~d~~~~~~l~~~L~~~gV~i~ 238 (484)
T TIGR01438 176 LP-Y----CPGKTLV-----------VGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDCANKVGEHMEEHGVKFK 238 (484)
T ss_pred cc-c----cCCCEEE-----------ECCCHHHHHHHHHHHHhCCcEEEEEec-ccccccCHHHHHHHHHHHHHcCCEEE
Confidence 00 0 1133433 799999999999999999999999985 444322211 345
Q ss_pred EcCCceEEcC--Cc--eEEcCCC---EeecCEEEEcccccccCCCCC-CCCCeEeecC-cccccccccccCCCCCeEEec
Q psy12350 305 KKPDIAELTP--TG--VRFQDGS---YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNK-NVQPLYKHLINIEHPSMCIIG 375 (1129)
Q Consensus 305 ~~~~v~~~~~--~~--v~~~dg~---~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~-~~~~l~~~~~~~~~p~l~~~G 375 (1129)
.+..+.++++ +. |.+++|+ ++++|.||+|+|.+++..+|. +..++.+++. ..+....+ +.++.|++|.+|
T Consensus 239 ~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~-~~Ts~p~IyA~G 317 (484)
T TIGR01438 239 RQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEE-EQTNVPYIYAVG 317 (484)
T ss_pred eCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCC-cccCCCCEEEEE
Confidence 5666666653 22 5666763 689999999999999998854 3456666532 32222222 225789999999
Q ss_pred cccc-----ccccccccceeeehhhccc
Q psy12350 376 YTYR-----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 376 ~~~~-----~~~~~~~~~~~~~a~~~~~ 398 (1129)
.... ++.+. .|++.+|.++.+
T Consensus 318 Dv~~~~~~l~~~A~--~~g~~aa~~i~~ 343 (484)
T TIGR01438 318 DILEDKQELTPVAI--QAGRLLAQRLFS 343 (484)
T ss_pred EecCCCccchHHHH--HHHHHHHHHHhc
Confidence 8642 22343 777777877754
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.1e-21 Score=231.37 Aligned_cols=304 Identities=15% Similarity=0.170 Sum_probs=170.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+||||||||++||..|++ .|.+|+|+|++ .+||+|.+ .||. | ...++.............| ++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~--~G~~v~lie~~-~~GG~c~n---~gci----P-sk~l~~~~~~~~~~~~~~~-~~ 164 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVE--QGARVTLIERG-TIGGTCVN---VGCV----P-SKIMIRAAHIAHLRRESPF-DG 164 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHh--CCCeEEEEecC-cceeeccc---cCcc----c-cHHHHHHHHHHHHHhcccc-cC
Confidence 35899999999999999999999 66899999996 89999994 4542 2 2222221111000000011 01
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCC---cceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNL---RNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFL 164 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~---~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 164 (1129)
.++. .......+++.++.++....+.. ...+.-...|+-+.......+...+.+.. .+++...+.|| +|
T Consensus 165 g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~-~~g~~~~~~~d-----~l 236 (561)
T PRK13748 165 GIAA--TVPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRL-NDGGERVVAFD-----RC 236 (561)
T ss_pred CccC--CCCccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEe-CCCceEEEEcC-----EE
Confidence 1111 01123566666665544433210 00000000122111111111223344432 22222357899 99
Q ss_pred EEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccc
Q psy12350 165 QLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFT 244 (1129)
Q Consensus 165 vvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 244 (1129)
||||| +.|..|++||..... + + ...+.+.
T Consensus 237 viAtG--s~p~~p~i~g~~~~~-----------------------~----------------------~----~~~~~~~ 265 (561)
T PRK13748 237 LIATG--ASPAVPPIPGLKETP-----------------------Y----------------------W----TSTEALV 265 (561)
T ss_pred EEcCC--CCCCCCCCCCCCccc-----------------------e----------------------E----ccHHHhh
Confidence 99999 889999887732100 0 0 0011111
Q ss_pred c-ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCc
Q psy12350 245 E-FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDI 309 (1129)
Q Consensus 245 ~-~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v 309 (1129)
. ...++++| ||+|++|+|+|..|++.|++|++++|.. +++..+++ ++..+..|
T Consensus 266 ~~~~~~~vvV-----------iGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v 333 (561)
T PRK13748 266 SDTIPERLAV-----------IGSSVVALELAQAFARLGSKVTILARST-LFFREDPAIGEAVTAAFRAEGIEVLEHTQA 333 (561)
T ss_pred cccCCCeEEE-----------ECCCHHHHHHHHHHHHcCCEEEEEecCc-cccccCHHHHHHHHHHHHHCCCEEEcCCEE
Confidence 0 01233333 8999999999999999999999999864 33322211 34556778
Q ss_pred eEEcCC--ceEE-cCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccccc----c
Q psy12350 310 AELTPT--GVRF-QDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY----P 381 (1129)
Q Consensus 310 ~~~~~~--~v~~-~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~----~ 381 (1129)
++++.+ .+.+ .++.++++|.||+|+|++++..+|. +..++.++++..+....++ -++.|++|++|..... +
T Consensus 334 ~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~-~Ts~~~IyA~GD~~~~~~~~~ 412 (561)
T PRK13748 334 SQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGM-RTSVPHIYAAGDCTDQPQFVY 412 (561)
T ss_pred EEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCc-ccCCCCEEEeeecCCCccchh
Confidence 887532 3322 2334689999999999999998752 3456666654433322222 2578999999987533 2
Q ss_pred ccccccceeeehhhcc
Q psy12350 382 FLHESCGIKVVNKNVQ 397 (1129)
Q Consensus 382 ~~~~~~~~~~~a~~~~ 397 (1129)
.+. .|++.+|.++.
T Consensus 413 ~A~--~~g~~aa~~i~ 426 (561)
T PRK13748 413 VAA--AAGTRAAINMT 426 (561)
T ss_pred HHH--HHHHHHHHHHc
Confidence 233 56666666654
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-21 Score=224.88 Aligned_cols=129 Identities=14% Similarity=0.101 Sum_probs=91.6
Q ss_pred CCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCceEEcCC--ce--EEc---CC-
Q psy12350 265 AANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAELTPT--GV--RFQ---DG- 322 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~~~~--~v--~~~---dg- 322 (1129)
||+|++|+|+|..+++.|++||++++.+.+++...++ ++..+..|++++++ ++ .+. +|
T Consensus 180 IGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~ 259 (466)
T PRK06115 180 IGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGA 259 (466)
T ss_pred ECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCc
Confidence 8999999999999999999999999988776543221 45567778888643 33 332 23
Q ss_pred -CEeecCEEEEcccccccCCCCC-CCCCeEeecCcc-cccccccccCCCCCeEEecccccc----cccccccceeeehhh
Q psy12350 323 -SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNV-QPLYKHLINIEHPSMCIIGYTYRY----PFLHESCGIKVVNKN 395 (1129)
Q Consensus 323 -~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~-~~l~~~~~~~~~p~l~~~G~~~~~----~~~~~~~~~~~~a~~ 395 (1129)
+++++|.||+|+|++++...|. +..++..+++.. ++.|. -++.|++|.+|..... +.+. .||+.+|.+
T Consensus 260 ~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~---~Ts~~~IyA~GD~~~~~~la~~A~--~~g~~aa~~ 334 (466)
T PRK06115 260 AETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHH---RTSVPGVWVIGDVTSGPMLAHKAE--DEAVACIER 334 (466)
T ss_pred eeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCe---ecCCCCEEEeeecCCCcccHHHHH--HHHHHHHHH
Confidence 4689999999999999988653 234555554332 22232 2578999999987532 3344 788888887
Q ss_pred ccc
Q psy12350 396 VQP 398 (1129)
Q Consensus 396 ~~~ 398 (1129)
+.+
T Consensus 335 i~~ 337 (466)
T PRK06115 335 IAG 337 (466)
T ss_pred HcC
Confidence 764
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-20 Score=225.16 Aligned_cols=302 Identities=15% Similarity=0.167 Sum_probs=175.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+||||||||++||++|++ .|.+|+|+|+ +.+||+|.+ .+|. |.+...+...... ....++.|.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~--~g~~v~lie~-~~~GG~~~~---~gc~----psk~l~~~~~~~~---~~~~~~~~g 69 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAK--LGKKVALIEK-GPLGGTCLN---VGCI----PSKALIAAAEAFH---EAKHAEEFG 69 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHH--CCCeEEEEeC-Cccccceec---ccee----eHHHHHHHHHHHH---HHHHHHhcC
Confidence 4899999999999999999999 6799999999 789999984 3442 2221111110001 111122222
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcc--eeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRN--LCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~--~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
++. .....+..++.++++++++++.... ...-...|+-+.......+.+.+.+ ....+.|| +|||
T Consensus 70 i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v------~~~~~~~d-----~lIi 136 (460)
T PRK06292 70 IHA--DGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV------NGERIEAK-----NIVI 136 (460)
T ss_pred CCc--CCCccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE------CcEEEEeC-----EEEE
Confidence 211 1134577888888888777653210 0000112222211111112333333 12356788 9999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccc-c
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFT-E 245 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~ 245 (1129)
||| +. .|++||... ..+. ... ...+.+. .
T Consensus 137 ATG--s~--~p~ipg~~~--~~~~-------------~~~-------------------------------~~~~~~~~~ 166 (460)
T PRK06292 137 ATG--SR--VPPIPGVWL--ILGD-------------RLL-------------------------------TSDDAFELD 166 (460)
T ss_pred eCC--CC--CCCCCCCcc--cCCC-------------cEE-------------------------------CchHHhCcc
Confidence 999 44 444554211 0000 000 0001110 0
Q ss_pred ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC-------------CCeEEcCCceEE
Q psy12350 246 FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP-------------NNVVKKPDIAEL 312 (1129)
Q Consensus 246 ~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~-------------~~i~~~~~v~~~ 312 (1129)
...++++ | ||+|++|+|+|..|++.|.+|++++|.+.+++..++ -++..+..|+++
T Consensus 167 ~~~k~v~-------V----IGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~I~i~~~~~v~~i 235 (460)
T PRK06292 167 KLPKSLA-------V----IGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKEFKIKLGAKVTSV 235 (460)
T ss_pred ccCCeEE-------E----ECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhccEEEcCCEEEEE
Confidence 0123333 3 899999999999999999999999998877653221 134456778888
Q ss_pred cCC---ceEE--cCC--CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccccc-cc-
Q psy12350 313 TPT---GVRF--QDG--SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY-PF- 382 (1129)
Q Consensus 313 ~~~---~v~~--~dg--~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~-~~- 382 (1129)
+++ .+.+ .+| +++++|.||+|+|.+++.++|. +..++..+++..+....++- .+.|++|.+|..... ++
T Consensus 236 ~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~-ts~~~IyA~GD~~~~~~~~ 314 (460)
T PRK06292 236 EKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQ-TSVPGIYAAGDVNGKPPLL 314 (460)
T ss_pred EEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcc-cCCCCEEEEEecCCCccch
Confidence 643 3543 344 4689999999999999998643 24556665544333333322 478999999987532 11
Q ss_pred cccccceeeehhhccc
Q psy12350 383 LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 383 ~~~~~~~~~~a~~~~~ 398 (1129)
..+..||+.+|.++.+
T Consensus 315 ~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 315 HEAADEGRIAAENAAG 330 (460)
T ss_pred hHHHHHHHHHHHHhcC
Confidence 2223788888887764
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-20 Score=221.52 Aligned_cols=267 Identities=19% Similarity=0.272 Sum_probs=173.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcc---------cCCcCcccccCCCCCCCCCCCCccccccCcc-------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQ---------ADNIGGTWLYTEHIGCDQYGLPVHSSMYKSL------- 803 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~---------~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~------- 803 (1129)
.+++|||+|++|+.+|..+.+.| .+|+|+|+ .+.+||+|.. .||- |.+..++...
T Consensus 26 yDvvVIG~GpaG~~aA~~a~~~G--~~V~liE~~~~~~~~~~~~~~GGtc~n---~Gci----PsK~l~~~a~~~~~~~~ 96 (499)
T PLN02507 26 FDLFVIGAGSGGVRAARFSANFG--AKVGICELPFHPISSESIGGVGGTCVI---RGCV----PKKILVYGATFGGEFED 96 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCcccccccCCCccceeec---cCch----hHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999 99999996 3679999974 3662 2111100000
Q ss_pred ------------cccccc-------ccccc----------cCCC--------CCCC-------CCC--CCCChhhhhhcc
Q psy12350 804 ------------KTNLPK-------DLMEL----------CGYG--------HKGN-------ADK--SYIGAKDVLENY 837 (1129)
Q Consensus 804 ------------~~~~~~-------~~~~~----------~~~~--------~~~~-------~~~--~~~~~~~v~~~~ 837 (1129)
..+..+ ....+ .... .... ... .+....-++++|
T Consensus 97 ~~~~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATG 176 (499)
T PLN02507 97 AKNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATG 176 (499)
T ss_pred HHhcCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecC
Confidence 000000 00000 0000 0000 000 122233344599
Q ss_pred CCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCcc-chhhhhcccc
Q psy12350 838 NHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD-ITLDIATRAS 916 (1129)
Q Consensus 838 ~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~-~~~~~~~~~~ 916 (1129)
+.|..|++||.+. .+++.+...... .+|+|+|||+|.+|+|+|..+++.|++|+++++.+..++ +.+.+.....
T Consensus 177 s~p~~p~ipG~~~----~~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~ 251 (499)
T PLN02507 177 SRAQRPNIPGKEL----AITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVA 251 (499)
T ss_pred CCCCCCCCCCccc----eechHHhhhhhh-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHH
Confidence 9999999999753 234433333333 378999999999999999999999999999998765443 2222222211
Q ss_pred EEEEecCCccccccCCCCCeEEcCC--eeEEeC--Cc--EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcc
Q psy12350 917 TVFLSHHSERVTSLCLPNNVVLKPD--VAELTP--TG--VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNV 989 (1129)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~ 989 (1129)
+.+. ..+|+++.+ ++++++ ++ +.+.+|+++++|.||+|+|++|+..+|. +..|+++++++.
T Consensus 252 ~~l~------------~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~ 319 (499)
T PLN02507 252 RNLE------------GRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGA 319 (499)
T ss_pred HHHH------------hCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCc
Confidence 1111 125666544 777753 33 5667888899999999999999988754 447788876554
Q ss_pred cccccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 990 QPLYKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 990 ~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
..+..++ .++.||||++|++... ...+.+..||+.++.++.|.
T Consensus 320 I~Vd~~~-~Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~ 363 (499)
T PLN02507 320 VKVDEYS-RTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGG 363 (499)
T ss_pred EecCCCC-cCCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCC
Confidence 4443333 4689999999999764 35689999999999999764
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.6e-20 Score=218.89 Aligned_cols=277 Identities=12% Similarity=0.172 Sum_probs=182.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||.+|++ .|++|+|+|+ .+||+|..+ ..++ .+..+
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~--~G~~v~li~~--~~GG~~~~~--------------~~~~-----------~~~~~ 260 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAAR--KGIRTGIVAE--RFGGQVLDT--------------MGIE-----------NFISV 260 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEec--CCCCeeecc--------------Cccc-----------ccCCC
Confidence 35799999999999999999999 6799999986 399999721 0011 01111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
.+....++.++++.+++++++ .++++++|+.+.+.. +.|.+.. .. .....+| +||+|
T Consensus 261 --------~~~~~~~l~~~l~~~~~~~gv--~i~~~~~V~~I~~~~---~~~~V~~---~~--g~~i~a~-----~vViA 317 (517)
T PRK15317 261 --------PETEGPKLAAALEEHVKEYDV--DIMNLQRASKLEPAA---GLIEVEL---AN--GAVLKAK-----TVILA 317 (517)
T ss_pred --------CCCCHHHHHHHHHHHHHHCCC--EEEcCCEEEEEEecC---CeEEEEE---CC--CCEEEcC-----EEEEC
Confidence 134667899999999999987 788899999987631 2343332 12 2346788 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| +.|+.|++||.. .+.+. +.+... .....+ ..
T Consensus 318 tG--~~~r~~~ipG~~--~~~~~-------------~v~~~~----------------------------~~~~~~--~~ 350 (517)
T PRK15317 318 TG--ARWRNMNVPGED--EYRNK-------------GVAYCP----------------------------HCDGPL--FK 350 (517)
T ss_pred CC--CCcCCCCCCCHH--HhcCc-------------eEEEee----------------------------ccCchh--cC
Confidence 99 677778887632 12111 000000 000001 12
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc------c---CCCCeEEcCCceEEcCC---
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL------R---FPNNVVKKPDIAELTPT--- 315 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~------~---~~~~i~~~~~v~~~~~~--- 315 (1129)
+++++| ||||++|+|+|..|+..+++|+++++.+.+... . ..-++..+..++++.++
T Consensus 351 gk~VvV-----------VGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~ 419 (517)
T PRK15317 351 GKRVAV-----------IGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDKLRSLPNVTIITNAQTTEVTGDGDK 419 (517)
T ss_pred CCEEEE-----------ECCCHHHHHHHHHHHhcCCEEEEEEECccccccHHHHHHHhcCCCcEEEECcEEEEEEcCCCc
Confidence 344444 899999999999999999999999998765321 0 11245566778888665
Q ss_pred --ceEEcC---CC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc---cccc
Q psy12350 316 --GVRFQD---GS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP---FLHE 385 (1129)
Q Consensus 316 --~v~~~d---g~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~---~~~~ 385 (1129)
++++.+ |+ ++++|.|++|+|++++.++++.. +..+++..+....++ -++.|++|++|.....| ...+
T Consensus 420 v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~--v~~~~~g~i~vd~~l-~Ts~p~IyAaGDv~~~~~k~~~~A 496 (517)
T PRK15317 420 VTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT--VELNRRGEIIVDARG-ATSVPGVFAAGDCTTVPYKQIIIA 496 (517)
T ss_pred EEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh--eeeCCCCcEEECcCC-CCCCCCEEECccccCCCCCEEEEh
Confidence 255543 43 47999999999999999998743 555443333222222 25889999999986543 3444
Q ss_pred ccceeeehhhcc
Q psy12350 386 SCGIKVVNKNVQ 397 (1129)
Q Consensus 386 ~~~~~~~a~~~~ 397 (1129)
..++..+|..+.
T Consensus 497 ~~eG~~Aa~~~~ 508 (517)
T PRK15317 497 MGEGAKAALSAF 508 (517)
T ss_pred hhhHHHHHHHHH
Confidence 466666665543
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-20 Score=218.06 Aligned_cols=270 Identities=20% Similarity=0.279 Sum_probs=171.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCcc-c--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPVH-S-- 797 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~~-~-- 797 (1129)
.+++|||+||+|+.+|..+.+.| .+|+|+|+. .+||+|.. .||-+ +|++.. .
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G--~~V~liE~~-~~GG~c~~---~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 76 (450)
T TIGR01421 3 YDYLVIGGGSGGIASARRAAEHG--AKALLVEAK-KLGGTCVN---VGCVPKKVMWYASDLAERMHDAADYGFYQNLENT 76 (450)
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CcEEEeccc-ccccceec---cCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCc
Confidence 37899999999999999999999 999999994 69999984 35421 011100 0
Q ss_pred cccCccccccc---cc----c-cccc--CCC-------CCCCC-----CCCCCChhhhhhccCCCCCC-CCCCCCCCCCc
Q psy12350 798 SMYKSLKTNLP---KD----L-MELC--GYG-------HKGNA-----DKSYIGAKDVLENYNHPIYP-EFKGKDMCQIP 854 (1129)
Q Consensus 798 ~~y~~~~~~~~---~~----~-~~~~--~~~-------~~~~~-----~~~~~~~~~v~~~~~~P~~P-~i~G~~~f~g~ 854 (1129)
..|..+..... +. . ..+. +.. +..+. ...+....-++++|+.|+.| ++||.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~vIiAtGs~p~~p~~i~g~~~---- 152 (450)
T TIGR01421 77 FNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEVNGRDYTAPHILIATGGKPSFPENIPGAEL---- 152 (450)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCCCCCCCCCCCCce----
Confidence 00000000000 00 0 0000 000 00000 00112222334499999999 8998752
Q ss_pred EEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCC
Q psy12350 855 ILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLP 933 (1129)
Q Consensus 855 ~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1129)
.+++.++..... .+|+|+|||+|.+|+|+|..|++.|++||++++.+..++. .+.+.....+.+. .
T Consensus 153 ~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~------------~ 219 (450)
T TIGR01421 153 GTDSDGFFALEE-LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYE------------K 219 (450)
T ss_pred eEcHHHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHH------------H
Confidence 233434333332 3699999999999999999999999999999987654432 2222221111110 1
Q ss_pred CCeEEcCC--eeEEeCC-----cEEecCC-cEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCCc
Q psy12350 934 NNVVLKPD--VAELTPT-----GVRFQDG-SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPTM 1004 (1129)
Q Consensus 934 ~~V~~~~~--i~~v~~~-----~V~~~dG-~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~l 1004 (1129)
.+|+++.+ +++++++ .+++++| +.+++|.||+|+|++|+.++|. +..++++++++...+... +.++.|||
T Consensus 220 ~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-~~T~~p~I 298 (450)
T TIGR01421 220 EGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEY-QNTNVPGI 298 (450)
T ss_pred cCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCC-CcCCCCCE
Confidence 25666654 7777532 2667788 5689999999999999988653 447888876654434333 45689999
Q ss_pred EEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1005 FILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1005 ~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
|++|++... ...+.+..||+.++..+.|.
T Consensus 299 yAiGD~~~~~~~~~~A~~~g~~aa~~i~~~ 328 (450)
T TIGR01421 299 YALGDVVGKVELTPVAIAAGRKLSERLFNG 328 (450)
T ss_pred EEEEecCCCcccHHHHHHHHHHHHHHHhcC
Confidence 999998754 45689999999999999853
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-20 Score=228.35 Aligned_cols=269 Identities=13% Similarity=0.183 Sum_probs=162.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||..|++ .|++|+|||+.+.+||++.+. .++|
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar--~G~~VtV~Ek~~~~GG~lr~~------------------------------IP~~ 585 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLAR--AGHPVTVFEREENAGGVVKNI------------------------------IPQF 585 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecccccCcceeee------------------------------cccc
Confidence 35799999999999999999999 669999999999999998740 1111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
. ...+++++..++..+.|+ ++++++.|. +.- . ......|| +||||
T Consensus 586 R----------lp~evL~~die~l~~~GV--e~~~gt~Vd-i~l------------e-----~L~~~gYD-----aVILA 630 (1019)
T PRK09853 586 R----------IPAELIQHDIEFVKAHGV--KFEFGCSPD-LTV------------E-----QLKNEGYD-----YVVVA 630 (1019)
T ss_pred c----------ccHHHHHHHHHHHHHcCC--EEEeCceeE-EEh------------h-----hheeccCC-----EEEEC
Confidence 1 112344444455666776 888888772 211 0 01123489 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
||.. .|..+++||.....+ ....++.. ++.
T Consensus 631 TGA~-~~~~l~IpG~~~gV~------------------saldfL~~-----------------------~k~-------- 660 (1019)
T PRK09853 631 IGAD-KNGGLKLEGGNQNVI------------------KALPFLEE-----------------------YKN-------- 660 (1019)
T ss_pred cCCC-CCCCCCCCCccCCce------------------ehHHHHHH-----------------------Hhh--------
Confidence 9942 244455655210000 00001000 000
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhccc-c-cEEEEccccCC-cccccC-------CC--CeEEcCCceEEcCC
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTE-A-TTVFLSHHSEH-VKKLRF-------PN--NVVKKPDIAELTPT 315 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~-~-~~V~lv~r~~~-~~~~~~-------~~--~i~~~~~v~~~~~~ 315 (1129)
....+-.|++|+| ||||++|+|+|..+.+. + ++|++++|+.. .++... .. ++.....+.+++++
T Consensus 661 ~~~~~~~GKrVVV----IGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~AleeGVe~~~~~~p~~I~~d 736 (1019)
T PRK09853 661 KGTALKLGKHVVV----VGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEEALEDGVEFKELLNPESFDAD 736 (1019)
T ss_pred hcccccCCCEEEE----ECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHHHHHHcCCEEEeCCceEEEEcC
Confidence 0001112455555 89999999999988776 4 58999998753 221110 01 23334444555322
Q ss_pred c-e-------------------EEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEec
Q psy12350 316 G-V-------------------RFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIG 375 (1129)
Q Consensus 316 ~-v-------------------~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G 375 (1129)
+ + ...++.++++|.||+|+|++++.+++. ..++..++.+.+.. ...+..+.|++|.+|
T Consensus 737 G~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle-~~GL~ld~~G~I~V-DetlqTs~pgVFAaG 814 (1019)
T PRK09853 737 GTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLK-ANGIPLDKKGWPVV-DANGETSLTNVYMIG 814 (1019)
T ss_pred CcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHH-hcCccccCCCCEEe-CCCcccCCCCEEEEe
Confidence 1 1 112234679999999999999999886 35566555443333 222335789999999
Q ss_pred cccccc--ccccccceeeehhhcccc
Q psy12350 376 YTYRYP--FLHESCGIKVVNKNVQPL 399 (1129)
Q Consensus 376 ~~~~~~--~~~~~~~~~~~a~~~~~~ 399 (1129)
.....| ...+..||+.+|+++.+.
T Consensus 815 D~a~Gp~tvv~Ai~qGr~AA~nI~~~ 840 (1019)
T PRK09853 815 DVQRGPSTIVAAIADARRAADAILSR 840 (1019)
T ss_pred ccccCchHHHHHHHHHHHHHHHHhhh
Confidence 986433 233448888888877653
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-20 Score=221.56 Aligned_cols=304 Identities=14% Similarity=0.134 Sum_probs=169.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
++|+||||||||++||.+|++ .|.+|+|+||+ .+||+|.+ .||. |.+......-.....+.. ..|.+
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~--~g~~V~lie~~-~~GG~c~n---~gci----Psk~l~~~a~~~~~~~~~---~~~g~ 67 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQ--NGKNVTLIDEA-DLGGTCLN---EGCM----PTKSLLESAEVHDKVKKA---NHFGI 67 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEECC-cccccCCC---Cccc----cchHHHHHHHHHHHHHHH---HhcCc
Confidence 389999999999999999999 67999999995 59999994 4542 222221111000000100 11111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEece-eeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNK-NVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~-~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
+........+...+.++.++..+++.-.....++. .|+-+.......+..++.+.. ++....+.|| +|||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~--~~~~~~~~~d-----~lviAT 140 (458)
T PRK06912 68 TLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEY--GDKEEVVDAE-----QFIIAA 140 (458)
T ss_pred cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEee--CCCcEEEECC-----EEEEeC
Confidence 10000112345566655554444321000111111 111111111112334444443 2222357799 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc-
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR- 247 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~- 247 (1129)
| +.|..|++++.... ... ...+.+....
T Consensus 141 G--s~p~~~p~~~~~~~------------------~v~-------------------------------~~~~~~~~~~~ 169 (458)
T PRK06912 141 G--SEPTELPFAPFDGK------------------WII-------------------------------NSKHAMSLPSI 169 (458)
T ss_pred C--CCCCCCCCCCCCCC------------------eEE-------------------------------cchHHhCcccc
Confidence 9 77877666441100 000 0000000000
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCeEEcCCceEEc
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNVVKKPDIAELT 313 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i~~~~~v~~~~ 313 (1129)
.++++| ||||++|+|+|..+++.+.+|+++++.+.+++...+ -++..+..|++++
T Consensus 170 ~~~vvI-----------IGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~ 238 (458)
T PRK06912 170 PSSLLI-----------VGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLN 238 (458)
T ss_pred CCcEEE-----------ECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence 133433 899999999999999999999999998877654221 1456677788886
Q ss_pred CCc--eEEc-CCC--EeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccccc-ccc-cc
Q psy12350 314 PTG--VRFQ-DGS--YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY-PFL-HE 385 (1129)
Q Consensus 314 ~~~--v~~~-dg~--~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~-~~~-~~ 385 (1129)
++. +.+. +|+ ++++|.||+|+|.+++.+++. +..++..+++. +...+++ -++.|++|.+|..... +++ .+
T Consensus 239 ~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~-~ts~~~VyA~GD~~~~~~la~~A 316 (458)
T PRK06912 239 SYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHM-QTNVPHIYACGDVIGGIQLAHVA 316 (458)
T ss_pred EcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCe-ecCCCCEEEEeecCCCcccHHHH
Confidence 543 5553 443 579999999999999988753 23445554433 2222222 2468999999987532 221 12
Q ss_pred ccceeeehhhcc
Q psy12350 386 SCGIKVVNKNVQ 397 (1129)
Q Consensus 386 ~~~~~~~a~~~~ 397 (1129)
..|++.+|.++.
T Consensus 317 ~~~g~~aa~~~~ 328 (458)
T PRK06912 317 FHEGTTAALHAS 328 (458)
T ss_pred HHHHHHHHHHHc
Confidence 266666666654
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-20 Score=231.75 Aligned_cols=288 Identities=17% Similarity=0.210 Sum_probs=184.7
Q ss_pred EEEEcCChHHHHHHHHhhcCC-CCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCCC
Q psy12350 12 IGVIGGGAGGLTATKRLTEPG-SGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHHK 90 (1129)
Q Consensus 12 V~IIGaG~aGl~aA~~l~~~~-~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~~ 90 (1129)
|+|||||+||++||.+|++.+ .+++|+|||+++.++ |. +..++..+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~----------------------y~--r~~L~~~l~g------- 49 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN----------------------YN--RILLSSVLQG------- 49 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC----------------------cc--cccccHHHCC-------
Confidence 689999999999999998865 568999999987642 11 0111111100
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEeccc
Q psy12350 91 GHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGH 170 (1129)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG~ 170 (1129)
..+.+++.....++.++.++ +++++++|+.|++ +.+.+... ......|| +||+|||
T Consensus 50 ------~~~~~~l~~~~~~~~~~~gv--~~~~g~~V~~Id~-----~~k~V~~~-----~g~~~~yD-----~LVlATG- 105 (785)
T TIGR02374 50 ------EADLDDITLNSKDWYEKHGI--TLYTGETVIQIDT-----DQKQVITD-----AGRTLSYD-----KLILATG- 105 (785)
T ss_pred ------CCCHHHccCCCHHHHHHCCC--EEEcCCeEEEEEC-----CCCEEEEC-----CCcEeeCC-----EEEECCC-
Confidence 00122222223344555666 8889999999886 33433321 22457899 9999999
Q ss_pred CCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccc-----
Q psy12350 171 VTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE----- 245 (1129)
Q Consensus 171 ~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----- 245 (1129)
+.|..|++||.... + .+.. ++.+++..
T Consensus 106 -s~p~~p~ipG~~~~---~---------------v~~~-----------------------------rt~~d~~~i~~~~ 137 (785)
T TIGR02374 106 -SYPFILPIPGADKK---G---------------VYVF-----------------------------RTIEDLDAIMAMA 137 (785)
T ss_pred -CCcCCCCCCCCCCC---C---------------EEEe-----------------------------CCHHHHHHHHHHh
Confidence 88999999873211 1 0000 11111100
Q ss_pred ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC---------------CeEEcCCce
Q psy12350 246 FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------------NVVKKPDIA 310 (1129)
Q Consensus 246 ~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------------~i~~~~~v~ 310 (1129)
...++++| ||||.+|+|+|..|++.|.+|+++++.+.+++..+.. ++..+..++
T Consensus 138 ~~~k~vvV-----------VGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~ 206 (785)
T TIGR02374 138 QRFKKAAV-----------IGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTV 206 (785)
T ss_pred hcCCeEEE-----------ECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceE
Confidence 01233433 8999999999999999999999999988776432211 456677788
Q ss_pred EEcCC----ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc-----c
Q psy12350 311 ELTPT----GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY-----P 381 (1129)
Q Consensus 311 ~~~~~----~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~-----~ 381 (1129)
++.++ +|.|+||+++++|.||+|+|++++.+++. +.++.++....++.+.+ +++|++|++|..... .
T Consensus 207 ~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~-~~gl~~~ggI~Vd~~~~---Ts~p~IyA~GD~a~~~~~~~g 282 (785)
T TIGR02374 207 EIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAV-SAGIKVNRGIIVNDSMQ---TSDPDIYAVGECAEHNGRVYG 282 (785)
T ss_pred EEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHH-hcCCccCCCEEECCCcc---cCCCCEEEeeecceeCCcccc
Confidence 88654 37899999999999999999999988765 34455543223333333 578999999987432 1
Q ss_pred c-cccccceeeehhhccccc---------ccccccccccceecCCC
Q psy12350 382 F-LHESCGIKVVNKNVQPLY---------KHLINIEHPSMCIIGIP 417 (1129)
Q Consensus 382 ~-~~~~~~~~~~a~~~~~~~---------~~~~~~~~~~~~~~~~p 417 (1129)
+ +....||+.+|.++.+.- ...+++-+.+++++|.+
T Consensus 283 l~~~a~~qa~vaA~ni~g~~~~~~~~~~~~~~lk~~g~~v~s~G~~ 328 (785)
T TIGR02374 283 LVAPLYEQAKVLADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDA 328 (785)
T ss_pred cHHHHHHHHHHHHHHhcCCCCcCCCCCccceEEEECCcceEecccC
Confidence 1 223478888888887532 22244445556666654
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=217.54 Aligned_cols=278 Identities=14% Similarity=0.213 Sum_probs=179.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+|||||||||+||.+|++ .|++|+|+|. .+||+|.... .+. .+..+
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~--~G~~v~li~~--~~GG~~~~~~--------------~~~-----------~~~~~ 261 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAAR--KGLRTAMVAE--RIGGQVKDTV--------------GIE-----------NLISV 261 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEec--CCCCccccCc--------------Ccc-----------ccccc
Confidence 45899999999999999999999 6799999975 5899987310 011 11111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
......++.+++.++++++++ .++++++|+.++... +.+.+.. .. .....|| +||+|
T Consensus 262 --------~~~~~~~l~~~l~~~l~~~gv--~i~~~~~V~~I~~~~---~~~~v~~---~~--g~~i~~d-----~lIlA 318 (515)
T TIGR03140 262 --------PYTTGSQLAANLEEHIKQYPI--DLMENQRAKKIETED---GLIVVTL---ES--GEVLKAK-----SVIVA 318 (515)
T ss_pred --------CCCCHHHHHHHHHHHHHHhCC--eEEcCCEEEEEEecC---CeEEEEE---CC--CCEEEeC-----EEEEC
Confidence 123456788888888888877 788899999887521 2233322 12 2356788 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| +.|+.|++||... +.++ +.+... .....+ ..
T Consensus 319 tG--a~~~~~~ipG~~~--~~~~-------------~v~~~~----------------------------~~~~~~--~~ 351 (515)
T TIGR03140 319 TG--ARWRKLGVPGEKE--YIGK-------------GVAYCP----------------------------HCDGPF--FK 351 (515)
T ss_pred CC--CCcCCCCCCCHHH--cCCC-------------eEEEee----------------------------ccChhh--cC
Confidence 99 6677788877321 1110 000000 000011 11
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc---------CCCCeEEcCCceEEcCC---
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR---------FPNNVVKKPDIAELTPT--- 315 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~---------~~~~i~~~~~v~~~~~~--- 315 (1129)
+++++| ||||++|+|+|..|+..+++||++++.+.+.... ..-++..+..++++.++
T Consensus 352 ~k~VvV-----------iGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~ 420 (515)
T TIGR03140 352 GKDVAV-----------IGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKVLQDKLKSLPNVDILTSAQTTEIVGDGDK 420 (515)
T ss_pred CCEEEE-----------ECCcHHHHHHHHHHHhcCcEEEEEEeCCcCChhHHHHHHHhcCCCCEEEECCeeEEEEcCCCE
Confidence 334444 8999999999999999999999999877653210 11245567778888755
Q ss_pred --ceEEcCC-----CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc---cccc
Q psy12350 316 --GVRFQDG-----SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP---FLHE 385 (1129)
Q Consensus 316 --~v~~~dg-----~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~---~~~~ 385 (1129)
+|.+.++ +++++|.||+|+|.+++.+++.. . +..+.+..+....++ -+++|++|.+|.....| ...+
T Consensus 421 v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~-~-~~~~~~G~I~vd~~~-~Ts~p~IyAaGDv~~~~~~~~~~A 497 (515)
T TIGR03140 421 VTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKD-A-VELNRRGEIVIDERG-RTSVPGIFAAGDVTTVPYKQIIIA 497 (515)
T ss_pred EEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhh-h-cccCCCCeEEECCCC-CCCCCCEEEcccccCCccceEEEE
Confidence 2666543 35799999999999999998864 2 444433322222221 25789999999886532 2333
Q ss_pred ccceeeehhhccc
Q psy12350 386 SCGIKVVNKNVQP 398 (1129)
Q Consensus 386 ~~~~~~~a~~~~~ 398 (1129)
..+|..+|..+..
T Consensus 498 ~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 498 MGEGAKAALSAFD 510 (515)
T ss_pred EccHHHHHHHHHH
Confidence 3666665655443
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-20 Score=218.12 Aligned_cols=258 Identities=14% Similarity=0.180 Sum_probs=156.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
+++|+|||||+||++||..|++.+...+|+|+++++... |. +..+++....-..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~----------------------y~--r~~l~~~~~~~~~-- 56 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP----------------------YE--RPPLSKSMLLEDS-- 56 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC----------------------CC--CCCCCHHHHCCCC--
Confidence 468999999999999999999977777999999976421 11 1112221111000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
. ...+... .++..+.++ .++.++.|..+++ +...+... ......|| +|||||
T Consensus 57 -~---~~~~~~~-------~~~~~~~~i--~~~~g~~V~~id~-----~~~~v~~~-----~g~~~~yd-----~LViAT 108 (396)
T PRK09754 57 -P---QLQQVLP-------ANWWQENNV--HLHSGVTIKTLGR-----DTRELVLT-----NGESWHWD-----QLFIAT 108 (396)
T ss_pred -c---cccccCC-------HHHHHHCCC--EEEcCCEEEEEEC-----CCCEEEEC-----CCCEEEcC-----EEEEcc
Confidence 0 0001111 122233455 7788888988876 22333221 12357899 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|+.|++++.... +.+.... .+.+....+.+ ...
T Consensus 109 G--s~~~~~p~~~~~~~------------------~v~~~~~----------------------~~da~~l~~~~--~~~ 144 (396)
T PRK09754 109 G--AAARPLPLLDALGE------------------RCFTLRH----------------------AGDAARLREVL--QPE 144 (396)
T ss_pred C--CCCCCCCCCCcCCC------------------CEEecCC----------------------HHHHHHHHHHh--hcC
Confidence 9 77776665431100 0000000 00000000011 012
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC---------------CeEEcCCceEEc
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------------NVVKKPDIAELT 313 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------------~i~~~~~v~~~~ 313 (1129)
++++ | ||+|++|+|+|..|++.|.+||++++.+.+++...+. ++..+..|++++
T Consensus 145 ~~vv-------V----iGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~ 213 (396)
T PRK09754 145 RSVV-------I----VGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVV 213 (396)
T ss_pred CeEE-------E----ECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEE
Confidence 3333 3 8999999999999999999999999988765432211 455677888886
Q ss_pred CCc---eEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccc
Q psy12350 314 PTG---VRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYR 379 (1129)
Q Consensus 314 ~~~---v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~ 379 (1129)
+++ +.+.+|+++++|.||+|+|.+++..++. ..++..+....++-|.+ +++|++|.+|....
T Consensus 214 ~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~-~~gl~~~~gi~vd~~~~---ts~~~IyA~GD~a~ 278 (396)
T PRK09754 214 DGEKVELTLQSGETLQADVVIYGIGISANDQLAR-EANLDTANGIVIDEACR---TCDPAIFAGGDVAI 278 (396)
T ss_pred cCCEEEEEECCCCEEECCEEEECCCCChhhHHHH-hcCCCcCCCEEECCCCc---cCCCCEEEccceEe
Confidence 532 5778999999999999999999987764 34444432222222222 46888999988753
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-20 Score=231.14 Aligned_cols=282 Identities=17% Similarity=0.182 Sum_probs=170.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||..|++ .|++|+|||+.+.+||++.| ..++
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar--~G~~VtVfE~~~~~GG~l~y------------------------------GIP~- 351 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAV--EGFPVTVFEAFHDLGGVLRY------------------------------GIPE- 351 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCCCCCceEEc------------------------------cCCC-
Confidence 35899999999999999999999 67999999999999999985 1111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
|....++.+...+..+..|+ .+++|+.|.. .+++.+ .....|| +||||
T Consensus 352 ---------~rlp~~vi~~~i~~l~~~Gv--~f~~n~~vG~-----------dit~~~-----l~~~~yD-----AV~LA 399 (944)
T PRK12779 352 ---------FRLPNQLIDDVVEKIKLLGG--RFVKNFVVGK-----------TATLED-----LKAAGFW-----KIFVG 399 (944)
T ss_pred ---------CcChHHHHHHHHHHHHhhcC--eEEEeEEecc-----------EEeHHH-----hccccCC-----EEEEe
Confidence 12223556655566677776 7787776621 111111 1123599 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccc-hhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSE-KYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||. ..|+.++|||.. .. |.++. .|+.....+. .....+.
T Consensus 400 tGA-~~pr~l~IpG~d---l~---------------GV~~a~dfL~~~~~~~-------------------~~~~~~~-- 439 (944)
T PRK12779 400 TGA-GLPTFMNVPGEH---LL---------------GVMSANEFLTRVNLMR-------------------GLDDDYE-- 439 (944)
T ss_pred CCC-CCCCcCCCCCCc---Cc---------------CcEEHHHHHHHHHhhc-------------------ccccccc--
Confidence 994 258888888732 11 22211 1211100000 0000000
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCc-cccc-------CCC--CeEEcCCceEEcCC-
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHV-KKLR-------FPN--NVVKKPDIAELTPT- 315 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~-~~~~-------~~~--~i~~~~~v~~~~~~- 315 (1129)
.......||+|+| ||||++|+|+|..+.+.|.+|++++|++.. .+.. ..+ ++.....++++.++
T Consensus 440 -~~~~~~~Gk~VvV----IGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a~eeGV~~~~~~~p~~i~~d~ 514 (944)
T PRK12779 440 -TPLPEVKGKEVFV----IGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHALEEGINLAVLRAPREFIGDD 514 (944)
T ss_pred -ccccccCCCEEEE----ECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHHHHHCCCEEEeCcceEEEEecC
Confidence 0000012444455 899999999999999999999999987531 1100 011 33344555666321
Q ss_pred -c--e---EE-----------------cCCC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCC
Q psy12350 316 -G--V---RF-----------------QDGS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPS 370 (1129)
Q Consensus 316 -~--v---~~-----------------~dg~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ 370 (1129)
+ | .+ .+|+ ++++|.||+|+|++++..+.....++..+.++.+......+.++.|+
T Consensus 515 ~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pg 594 (944)
T PRK12779 515 HTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKG 594 (944)
T ss_pred CCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCC
Confidence 1 1 11 1233 47999999999999986543333456665544333333334468899
Q ss_pred eEEeccccccc--ccccccceeeehhhcccc
Q psy12350 371 MCIIGYTYRYP--FLHESCGIKVVNKNVQPL 399 (1129)
Q Consensus 371 l~~~G~~~~~~--~~~~~~~~~~~a~~~~~~ 399 (1129)
+|++|.....+ ...+..+++.+|..+...
T Consensus 595 VFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~ 625 (944)
T PRK12779 595 VYSGGDAARGGSTAIRAAGDGQAAAKEIVGE 625 (944)
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999986543 233447777777777643
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-20 Score=223.34 Aligned_cols=308 Identities=17% Similarity=0.166 Sum_probs=175.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc-CCcCceEecCCCCCCCCCCCCccCcccccccccCCccc-----c
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT-DNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEI-----M 82 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~-~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~-----~ 82 (1129)
.+||+||||||+|++||..+++ .|.+|+|+|+. ..+||+|.+ .||. |.+...+..-.....+.. +
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~--~G~kV~lie~~~~~lGGtCvn---~GCi----PsK~l~~~a~~~~~~~~~~~~~~~ 186 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAME--RGLKVIIFTGDDDSIGGTCVN---VGCI----PSKALLYATGKYRELKNLAKLYTY 186 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCccccceeE---eCCc----chHHHHHHHHHHHHHHhccccccC
Confidence 5799999999999999999999 67999999974 479999994 5553 333322222111111111 1
Q ss_pred ccC--CCC------CCC-CC--CCCCCCHHHHHHHHHHHHHhcC--Ccce-----eEecee-eeeeccccccCCCCceEE
Q psy12350 83 ELS--GYH------HKG-HP--DKSYIAANDVLEYLNDFADNFN--LRNL-----CLVNKN-VQPLYKHLINIEHPSMCI 143 (1129)
Q Consensus 83 ~~~--d~~------~~~-~~--~~~~~~~~~~~~yl~~~~~~~~--~~~~-----i~~~~~-V~~v~~~~~~~~~~~~~~ 143 (1129)
... .|| .+. .+ ...-++...+.++.+...+++. +... +..+++ |+-+...+...+..++.+
T Consensus 187 Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v 266 (659)
T PTZ00153 187 GIYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKS 266 (659)
T ss_pred CeeeccccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEE
Confidence 110 010 000 00 1112367777887777666542 1100 111112 322222222223344433
Q ss_pred eccccCccceEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCC
Q psy12350 144 IGIPRDTVGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESP 223 (1129)
Q Consensus 144 ~~~~~~~~~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (1129)
. . ......|| +|||||| +.|..|++++.. + ....
T Consensus 267 ~---~-~g~~i~ad-----~lIIATG--S~P~~P~~~~~~-----~-------------~~V~----------------- 300 (659)
T PTZ00153 267 E---K-SGKEFKVK-----NIIIATG--STPNIPDNIEVD-----Q-------------KSVF----------------- 300 (659)
T ss_pred c---c-CCEEEECC-----EEEEcCC--CCCCCCCCCCCC-----C-------------CcEE-----------------
Confidence 2 1 12356788 9999999 888888653310 0 0000
Q ss_pred CCccchhcccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC---
Q psy12350 224 VPPVLLKIYFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--- 300 (1129)
Q Consensus 224 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--- 300 (1129)
...+.+.... ++++++| ||||++|+|+|..++..|++||++++.+.+++..++
T Consensus 301 --------------ts~d~~~l~~------lpk~VvI----VGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~d~eis 356 (659)
T PTZ00153 301 --------------TSDTAVKLEG------LQNYMGI----VGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADVA 356 (659)
T ss_pred --------------ehHHhhhhhh------cCCceEE----ECCCHHHHHHHHHHHhCCCeEEEEeccCcccccCCHHHH
Confidence 0000000000 1223333 899999999999999999999999999877653222
Q ss_pred ----------C--CeEEcCCceEEcCCc----eEE--cC-------C--------CEeecCEEEEcccccccCCCCC-CC
Q psy12350 301 ----------N--NVVKKPDIAELTPTG----VRF--QD-------G--------SYEQVDIILYCTGYTYRYPFLH-ES 346 (1129)
Q Consensus 301 ----------~--~i~~~~~v~~~~~~~----v~~--~d-------g--------~~~~~D~VI~atG~~~~~~~l~-~~ 346 (1129)
. ++..+..|++++++. |.+ .+ + +++++|.||+|||.+|+..+|. +.
T Consensus 357 ~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~ 436 (659)
T PTZ00153 357 KYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDK 436 (659)
T ss_pred HHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchh
Confidence 1 344566677886431 332 21 1 2689999999999999998864 23
Q ss_pred CCeEeecCcc--ccccccccc---CCCCCeEEeccccc----ccccccccceeeehhhccc
Q psy12350 347 CGIKVVNKNV--QPLYKHLIN---IEHPSMCIIGYTYR----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 347 ~~~~~~~~~~--~~l~~~~~~---~~~p~l~~~G~~~~----~~~~~~~~~~~~~a~~~~~ 398 (1129)
.++..+. .. ++-|.++-. ...|++|.+|.... ++.+. .||+.+|.++.+
T Consensus 437 ~gi~~~~-G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~--~qg~~aa~ni~g 494 (659)
T PTZ00153 437 LKIQMKR-GFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTAS--HQALKVVDWIEG 494 (659)
T ss_pred cCCcccC-CEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHH--HHHHHHHHHHcC
Confidence 4444432 22 233333321 11578999988743 23344 788888888865
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-20 Score=216.17 Aligned_cols=277 Identities=15% Similarity=0.180 Sum_probs=164.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||..|++ .|++|+|||+.+.+||++.|. ++++
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~--~G~~V~vie~~~~~GG~l~~g------------------------------ip~~ 179 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAK--AGHSVTVFEALHKPGGVVTYG------------------------------IPEF 179 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCcEeeec------------------------------CCCc
Confidence 35899999999999999999999 679999999999999998741 0111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
. ...++.+...+...+.++ .+++++.|. + .+++ .. ....|| +||||
T Consensus 180 ~----------~~~~~~~~~~~~l~~~gv--~~~~~~~v~---~--------~v~~---~~---~~~~yd-----~viiA 225 (449)
T TIGR01316 180 R----------LPKEIVVTEIKTLKKLGV--TFRMNFLVG---K--------TATL---EE---LFSQYD-----AVFIG 225 (449)
T ss_pred c----------CCHHHHHHHHHHHHhCCc--EEEeCCccC---C--------cCCH---HH---HHhhCC-----EEEEe
Confidence 0 112444444455556665 677776541 1 1111 11 112489 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCccccccccc-chhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRS-EKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||. +.|..|++||.. ..| .+. ..++.... ....+..+..
T Consensus 226 tGa-~~p~~~~ipG~~---~~g---------------v~~~~~~l~~~~-----------------~~~~~~~~~~---- 265 (449)
T TIGR01316 226 TGA-GLPKLMNIPGEE---LCG---------------VYSANDFLTRAN-----------------LMKAYEFPHA---- 265 (449)
T ss_pred CCC-CCCCcCCCCCCC---CCC---------------cEEHHHHHHHHh-----------------hccccccccc----
Confidence 993 268888887732 111 111 11100000 0000000000
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccC--------CC--CeEEcCCceEEcC--
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRF--------PN--NVVKKPDIAELTP-- 314 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~--------~~--~i~~~~~v~~~~~-- 314 (1129)
......|++|+| ||||++|+|+|..+++.|.+||+++|++....... .. ++.....+.++.+
T Consensus 266 --~~~~~~gk~VvV----IGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~ 339 (449)
T TIGR01316 266 --DTPVYAGKSVVV----IGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFLCQPVEIIGDE 339 (449)
T ss_pred --CCcccCCCeEEE----ECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEeccCcEEEEEcC
Confidence 000112444455 89999999999999999999999998764211000 11 3445566677642
Q ss_pred C----ceEEc---------CC-----------CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCC
Q psy12350 315 T----GVRFQ---------DG-----------SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPS 370 (1129)
Q Consensus 315 ~----~v~~~---------dg-----------~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ 370 (1129)
+ +|.+. +| .++++|.||+|+|++++..++. ..++..+.+..+..... +-++.|+
T Consensus 340 ~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~-~~gl~~~~~G~i~vd~~-~~Ts~~~ 417 (449)
T TIGR01316 340 EGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAE-TTRLKTSERGTIVVDED-QRTSIPG 417 (449)
T ss_pred CCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhh-ccCcccCCCCeEEeCCC-CccCCCC
Confidence 2 13442 23 2579999999999999988776 34555554332222121 2357899
Q ss_pred eEEecccccccc--cccccceeeehhhccc
Q psy12350 371 MCIIGYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 371 l~~~G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
+|.+|.....|. ..+..||+.+|.++..
T Consensus 418 VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 418 VFAGGDIILGAATVIRAMGQGKRAAKSINE 447 (449)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 999998853321 2334777777776643
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=6e-20 Score=217.54 Aligned_cols=301 Identities=13% Similarity=0.143 Sum_probs=171.6
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
++|+||||||+|+.||..+++ .|.+|+|+||+ .+||+|.+ .+|. |.+..++..-.....+ ..+.+.+
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~--~g~~v~~~e~~-~~gG~c~~---~gci----PsK~l~~~a~~~~~~~---~~~~~g~ 68 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQ--LGADVTVIERD-GLGGAAVL---TDCV----PSKTLIATAEVRTELR---RAAELGI 68 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCeEEEEEcc-CCCCcccc---cCCc----chHHHHHHHHHHHHHH---HHHhCCc
Confidence 589999999999999999999 66999999995 59999994 4442 2222221110000001 1111111
Q ss_pred CCC-CCCCCCCHHHHHHHHHHH-----------HHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 90 KGH-PDKSYIAANDVLEYLNDF-----------ADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 90 ~~~-~~~~~~~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
... +.....+...+.+++++. .++.++ +++.++ ++.++. ..+..++.+.. .++......||
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~~g~-~~~~~~---~~~~~~v~V~~-~~g~~~~~~~d 141 (466)
T PRK07845 69 RFIDDGEARVDLPAVNARVKALAAAQSADIRARLEREGV--RVIAGR-GRLIDP---GLGPHRVKVTT-ADGGEETLDAD 141 (466)
T ss_pred ccccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEE-EEEeec---ccCCCEEEEEe-CCCceEEEecC
Confidence 000 000112334444444333 233333 444332 222110 01233444432 12222356788
Q ss_pred ceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFA 237 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 237 (1129)
+|||||| +.|..|++++..... .+.. ...+
T Consensus 142 -----~lViATG--s~p~~~p~~~~~~~~------------------v~~~-------------------------~~~~ 171 (466)
T PRK07845 142 -----VVLIATG--ASPRILPTAEPDGER------------------ILTW-------------------------RQLY 171 (466)
T ss_pred -----EEEEcCC--CCCCCCCCCCCCCce------------------EEee-------------------------hhhh
Confidence 9999999 778766543210000 0000 0000
Q ss_pred ccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------Ce
Q psy12350 238 RCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NV 303 (1129)
Q Consensus 238 ~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i 303 (1129)
. .+.+ .++++ | ||+|++|+|+|..|++.|.+||++++.+.+++...++ ++
T Consensus 172 ~-~~~~----~~~vv-------V----IGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i 235 (466)
T PRK07845 172 D-LDEL----PEHLI-------V----VGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTV 235 (466)
T ss_pred c-cccc----CCeEE-------E----ECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEE
Confidence 0 0011 12333 3 8999999999999999999999999988776543321 34
Q ss_pred EEcCCceEEcC--Cc--eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 304 VKKPDIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 304 ~~~~~v~~~~~--~~--v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
..+..|+++++ ++ +.+.+|+++++|.||+|+|++++...|. +..++.++++..+...+++ -++.|++|++|...
T Consensus 236 ~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~-~Ts~~~IyA~GD~~ 314 (466)
T PRK07845 236 LKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVS-RTSVPGIYAAGDCT 314 (466)
T ss_pred EcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCc-ccCCCCEEEEeecc
Confidence 55667888853 33 5667898999999999999999988642 2456776655433333332 25789999999875
Q ss_pred cc-cc-cccccceeeehhhcc
Q psy12350 379 RY-PF-LHESCGIKVVNKNVQ 397 (1129)
Q Consensus 379 ~~-~~-~~~~~~~~~~a~~~~ 397 (1129)
.. ++ ..+..|++.+|.++.
T Consensus 315 ~~~~l~~~A~~~g~~aa~~i~ 335 (466)
T PRK07845 315 GVLPLASVAAMQGRIAMYHAL 335 (466)
T ss_pred CCccchhHHHHHHHHHHHHHc
Confidence 32 22 112267766666655
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-19 Score=195.70 Aligned_cols=258 Identities=18% Similarity=0.271 Sum_probs=172.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCce-EEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFT-CTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~-v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.+||+|||||||||+||.++.+ .+.+ ++|+|+ ..+||....+. .+-.|+.|
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r--~~l~~~li~~~-~~~gg~~~~~~-------------------------~venypg~ 54 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAAR--AGLKVVLILEG-GEPGGQLTKTT-------------------------DVENYPGF 54 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHH--cCCCcEEEEec-CCcCCccccce-------------------------eecCCCCC
Confidence 4899999999999999999999 6688 666666 66776655211 23344443
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
+. -.+..++.+.++.++..++. ++.. ..|.+++... + .+.+.+ +.. .+..+ +||||
T Consensus 55 ~~-------~~~g~~L~~~~~~~a~~~~~--~~~~-~~v~~v~~~~---~--~F~v~t---~~~-~~~ak-----~vIiA 110 (305)
T COG0492 55 PG-------GILGPELMEQMKEQAEKFGV--EIVE-DEVEKVELEG---G--PFKVKT---DKG-TYEAK-----AVIIA 110 (305)
T ss_pred cc-------CCchHHHHHHHHHHHhhcCe--EEEE-EEEEEEeecC---c--eEEEEE---CCC-eEEEe-----EEEEC
Confidence 31 23567888888999998876 4444 6677776521 1 233332 111 14445 89999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| ..++.|.+||.. .+.|+ +.+. |. .+... ++
T Consensus 111 tG--~~~~~~~~~~e~--e~~g~-------------gv~y-------c~---------------------~cdg~---~~ 142 (305)
T COG0492 111 TG--AGARKLGVPGEE--EFEGK-------------GVSY-------CA---------------------TCDGF---FK 142 (305)
T ss_pred cC--CcccCCCCCcch--hhcCC-------------ceEE-------ee---------------------ecCcc---cc
Confidence 99 777888777532 34332 1110 10 22222 34
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc--------C-CCCeEEcCCceEEcCC---
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR--------F-PNNVVKKPDIAELTPT--- 315 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~--------~-~~~i~~~~~v~~~~~~--- 315 (1129)
+++++| ||||.||+|.|..|++.+++||+++|++.+.... . .-.+..+..|.++.++
T Consensus 143 ~k~v~V-----------iGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~ 211 (305)
T COG0492 143 GKDVVV-----------IGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKKNVKIEVLTNTVVKEILGDDVE 211 (305)
T ss_pred CCeEEE-----------EcCCHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHHHHHHhcCCeEEEeCCceeEEecCccc
Confidence 566665 7999999999999999999999999998765421 1 1134567789999884
Q ss_pred ceEEcCC--C--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc
Q psy12350 316 GVRFQDG--S--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY 380 (1129)
Q Consensus 316 ~v~~~dg--~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~ 380 (1129)
+|.+++. + ++++|.|+++.|+.++..|+.. ..+ .+++.....-.. ..++.|++|.+|.....
T Consensus 212 ~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~-~~~-~~~~g~I~v~~~-~~TsvpGifAaGDv~~~ 277 (305)
T COG0492 212 GVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKG-LGV-LDENGYIVVDEE-METSVPGIFAAGDVADK 277 (305)
T ss_pred eEEEEecCCceEEEEeceEEEecCCCCchHHHhh-ccc-cCCCCcEEcCCC-cccCCCCEEEeEeeccC
Confidence 5888874 2 4699999999999999999874 222 333333222222 44789999999988644
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-20 Score=229.86 Aligned_cols=252 Identities=18% Similarity=0.286 Sum_probs=165.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCC--CCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPG--SGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~--~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
++|+|||||+||+.+|..|++.+ .+++|+||++++.++ |.. ..++..+..
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~----------------------Y~r--~~L~~~~~~---- 55 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA----------------------YDR--VHLSSYFSH---- 55 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc----------------------ccC--CcchHhHcC----
Confidence 58999999999999999998643 468999999987531 211 111111100
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
...+++.....++.++.++ .++.+++|+.+++. ...+.. .....+.|| +||||
T Consensus 56 ----------~~~~~l~~~~~~~~~~~gI--~~~~g~~V~~Id~~-----~~~V~~-----~~G~~i~yD-----~LVIA 108 (847)
T PRK14989 56 ----------HTAEELSLVREGFYEKHGI--KVLVGERAITINRQ-----EKVIHS-----SAGRTVFYD-----KLIMA 108 (847)
T ss_pred ----------CCHHHccCCCHHHHHhCCC--EEEcCCEEEEEeCC-----CcEEEE-----CCCcEEECC-----EEEEC
Confidence 0122333333444556666 78889999988762 222221 122457899 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccc--
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE-- 245 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-- 245 (1129)
|| +.|..|++||.....+ +.. +..+++..
T Consensus 109 TG--s~p~~p~ipG~~~~~v------------------~~~-----------------------------rt~~d~~~l~ 139 (847)
T PRK14989 109 TG--SYPWIPPIKGSETQDC------------------FVY-----------------------------RTIEDLNAIE 139 (847)
T ss_pred CC--CCcCCCCCCCCCCCCe------------------EEE-----------------------------CCHHHHHHHH
Confidence 99 8899998887321100 000 11111110
Q ss_pred ---ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC---------------CeEEcC
Q psy12350 246 ---FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------------NVVKKP 307 (1129)
Q Consensus 246 ---~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------------~i~~~~ 307 (1129)
...++++| ||||.+|+|+|..|++.|.+|+++++.+.+++..+.. ++..+.
T Consensus 140 ~~~~~~k~vvV-----------IGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~ 208 (847)
T PRK14989 140 ACARRSKRGAV-----------VGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSK 208 (847)
T ss_pred HHHhcCCeEEE-----------ECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCC
Confidence 01233333 8999999999999999999999999998876532211 456677
Q ss_pred CceEEcCC------ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 308 DIAELTPT------GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 308 ~v~~~~~~------~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
.++++.++ .+.++||+++++|.||+|+|.+|+..++. ..++.++++..+....++. +++|++|.+|...
T Consensus 209 ~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~-~~Gl~~~~~G~I~VD~~l~-Ts~p~IYAiGD~a 283 (847)
T PRK14989 209 NTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLAT-QCGLAVAPRGGIVINDSCQ-TSDPDIYAIGECA 283 (847)
T ss_pred eEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHh-hcCccCCCCCcEEECCCCc-CCCCCEEEeecce
Confidence 78888532 37789999999999999999999988765 4556665543333323322 5789999999875
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.9e-20 Score=214.97 Aligned_cols=299 Identities=16% Similarity=0.150 Sum_probs=173.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+||||||+|..||..+ .|.+|+|+|+ +.+||+|. +.||. |.+...+..-.....+ ....|.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~----~g~~V~lie~-~~~GGtC~---n~GCi----PsK~l~~~a~~~~~~~---~~~~~g 66 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF----ADKRIAIVEK-GTFGGTCL---NVGCI----PTKMFVYAAEVAQSIG---ESARLG 66 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH----CCCeEEEEeC-CCCCCeee---ccCcc----chHHHHHHHHHHHHHH---HhhccC
Confidence 48999999999999986543 4689999998 66999999 45553 3333222211111111 111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHH-HHHhcC-CcceeEec---eeeeeeccccccCCCCceEEeccccCccceEEecceeeeE
Q psy12350 89 HKGHPDKSYIAANDVLEYLND-FADNFN-LRNLCLVN---KNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~-~~~~~~-~~~~i~~~---~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 163 (1129)
+.. ...-++..++.++... ..+... .....+++ ..|+-+.......+.+++.+. + ...+.|| +
T Consensus 67 ~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~---~--g~~~~~d-----~ 134 (452)
T TIGR03452 67 IDA--EIDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTG---D--GEEITGD-----Q 134 (452)
T ss_pred eeC--CCCccCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEEC---C--CcEEEeC-----E
Confidence 110 0012355666666544 222211 00011110 123222222222344545442 1 2346789 9
Q ss_pred EEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccc
Q psy12350 164 LQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDF 243 (1129)
Q Consensus 164 lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 243 (1129)
|||||| +.|..|++++.. + ..... . .....+
T Consensus 135 lIiATG--s~p~~p~~~~~~-----~---------------~~~~~-----------------------~----~~~~~l 165 (452)
T TIGR03452 135 IVIAAG--SRPYIPPAIADS-----G---------------VRYHT-----------------------N----EDIMRL 165 (452)
T ss_pred EEEEEC--CCCCCCCCCCCC-----C---------------CEEEc-----------------------H----HHHHhh
Confidence 999999 888877642200 0 00000 0 000001
Q ss_pred ccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC-------------CeEEcCCce
Q psy12350 244 TEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN-------------NVVKKPDIA 310 (1129)
Q Consensus 244 ~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~-------------~i~~~~~v~ 310 (1129)
. ...++++| ||+|++|+|+|..|++.|.+|+++++.+.+++...++ ++..+..|+
T Consensus 166 ~-~~~k~vvV-----------IGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~~~gI~i~~~~~V~ 233 (452)
T TIGR03452 166 P-ELPESLVI-----------VGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIAKKKWDIRLGRNVT 233 (452)
T ss_pred h-hcCCcEEE-----------ECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHHhcCCEEEeCCEEE
Confidence 0 01233333 8999999999999999999999999988765432211 345567788
Q ss_pred EEcC--Cc--eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccccc----c
Q psy12350 311 ELTP--TG--VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY----P 381 (1129)
Q Consensus 311 ~~~~--~~--v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~----~ 381 (1129)
+++. ++ +.+.+|+++++|.||+|+|.+++..+|. +..++..+++..+....++- ++.|++|++|..... +
T Consensus 234 ~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~-Ts~~~IyA~GD~~~~~~l~~ 312 (452)
T TIGR03452 234 AVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGR-TSARGVWALGDVSSPYQLKH 312 (452)
T ss_pred EEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcc-cCCCCEEEeecccCcccChh
Confidence 8863 33 5566888899999999999999999865 34567776554444333333 689999999987532 2
Q ss_pred ccccccceeeehhhccc
Q psy12350 382 FLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 382 ~~~~~~~~~~~a~~~~~ 398 (1129)
.+. .|++.+|.++.+
T Consensus 313 ~A~--~~g~~~a~ni~~ 327 (452)
T TIGR03452 313 VAN--AEARVVKHNLLH 327 (452)
T ss_pred HHH--HHHHHHHHHhcC
Confidence 244 788888887764
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.1e-20 Score=216.80 Aligned_cols=278 Identities=16% Similarity=0.153 Sum_probs=171.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||..|++ .+++|+|||+.+.+||.+.+. .+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~--~g~~V~lie~~~~~gG~l~~g------------------------------ip~- 185 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLAR--KGYDVTIFEARDKAGGLLRYG------------------------------IPE- 185 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCCcEeecc------------------------------CCC-
Confidence 45899999999999999999999 669999999999999988740 000
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
+....++.++..++.+++++ .+++++.|... +++ .. ....|| +||+|
T Consensus 186 ---------~~~~~~~~~~~~~~l~~~gv--~~~~~~~v~~~-----------v~~---~~---~~~~~d-----~vvlA 232 (457)
T PRK11749 186 ---------FRLPKDIVDREVERLLKLGV--EIRTNTEVGRD-----------ITL---DE---LRAGYD-----AVFIG 232 (457)
T ss_pred ---------ccCCHHHHHHHHHHHHHcCC--EEEeCCEECCc-----------cCH---HH---HHhhCC-----EEEEc
Confidence 11123566666666777776 77777765210 000 11 114589 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCccccccccc-chhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRS-EKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||.. .|..+++||... .| ... ..++.... .......+ .
T Consensus 233 tGa~-~~~~~~i~G~~~---~g---------------v~~~~~~l~~~~--------------------~~~~~~~~--~ 271 (457)
T PRK11749 233 TGAG-LPRFLGIPGENL---GG---------------VYSAVDFLTRVN--------------------QAVADYDL--P 271 (457)
T ss_pred cCCC-CCCCCCCCCccC---CC---------------cEEHHHHHHHHh--------------------hccccccC--C
Confidence 9942 366666766321 11 111 01100000 00000011 1
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhccccc-EEEEccccCCc-cccc---------CCCCeEEcCCceEEcCC
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEAT-TVFLSHHSEHV-KKLR---------FPNNVVKKPDIAELTPT 315 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~-~V~lv~r~~~~-~~~~---------~~~~i~~~~~v~~~~~~ 315 (1129)
. |++|+| ||||++|+|+|..+++.|. +|++++|++.. ++.. ..-++.....+.++.++
T Consensus 272 ~-------g~~VvV----iGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~ 340 (457)
T PRK11749 272 V-------GKRVVV----IGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWLAAPVEILGD 340 (457)
T ss_pred C-------CCeEEE----ECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEecCCcEEEEec
Confidence 1 334444 8999999999999999886 89999986532 1110 11145556777777543
Q ss_pred c-----eEEc-------------------CCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCe
Q psy12350 316 G-----VRFQ-------------------DGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSM 371 (1129)
Q Consensus 316 ~-----v~~~-------------------dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l 371 (1129)
+ |.+. +++++++|.||+|+|++++..++....++..+.+..+........++.|++
T Consensus 341 ~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~V 420 (457)
T PRK11749 341 EGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGV 420 (457)
T ss_pred CCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCE
Confidence 2 5542 223679999999999999977765444455544433332222233578999
Q ss_pred EEeccccccc--ccccccceeeehhhcccccccc
Q psy12350 372 CIIGYTYRYP--FLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 372 ~~~G~~~~~~--~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
|.+|.....+ ...+..||+.+|.++...+.++
T Consensus 421 fA~GD~~~~~~~~~~A~~~G~~aA~~I~~~l~g~ 454 (457)
T PRK11749 421 FAGGDIVTGAATVVWAVGDGKDAAEAIHEYLEGA 454 (457)
T ss_pred EEeCCcCCCchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999875332 2234488888888877666553
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-19 Score=216.18 Aligned_cols=282 Identities=16% Similarity=0.231 Sum_probs=181.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+|||||||||+||.+|++ .+++|+|||++ .+||+|.... ....++.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar--~g~~V~liE~~-~~GG~~~~~~-------------------------~i~~~pg- 53 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGR--AKLDTLIIEKD-DFGGQITITS-------------------------EVVNYPG- 53 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHH--CCCCEEEEecC-CCCceEEecc-------------------------ccccCCC-
Confidence 34899999999999999999999 67999999994 7999987310 0011111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
....+..++.++++..++++++ .+ .+++|+.++.. .....+.+ .. ....+| +||+|
T Consensus 54 -------~~~~~~~~l~~~l~~~~~~~gv--~~-~~~~V~~i~~~-----~~~~~V~~-~~---g~~~a~-----~lVlA 109 (555)
T TIGR03143 54 -------ILNTTGPELMQEMRQQAQDFGV--KF-LQAEVLDVDFD-----GDIKTIKT-AR---GDYKTL-----AVLIA 109 (555)
T ss_pred -------CcCCCHHHHHHHHHHHHHHcCC--EE-eccEEEEEEec-----CCEEEEEe-cC---CEEEEe-----EEEEC
Confidence 1123556888999999998876 44 36788877642 11112222 11 235677 89999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| +.|+.|++||... +.+. +.+... .....+ ..
T Consensus 110 TG--a~p~~~~ipG~~~--~~~~-------------~v~~~~----------------------------~~~~~~--~~ 142 (555)
T TIGR03143 110 TG--ASPRKLGFPGEEE--FTGR-------------GVAYCA----------------------------TCDGEF--FT 142 (555)
T ss_pred CC--CccCCCCCCCHHH--hCCc-------------eEEEEe----------------------------ecChhh--cC
Confidence 99 7888898887421 1110 000000 000011 12
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc--------c-CCCCeEEcCCceEEcCCc--
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL--------R-FPNNVVKKPDIAELTPTG-- 316 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~--------~-~~~~i~~~~~v~~~~~~~-- 316 (1129)
+++++| ||||++|+|+|..|++.+++|++++|.+.+... . ..-++..+..|+++.+++
T Consensus 143 g~~VvV-----------IGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~gV~i~~~~~V~~i~~~~~v 211 (555)
T TIGR03143 143 GMDVFV-----------IGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEKVKNHPKIEVKFNTELKEATGDDGL 211 (555)
T ss_pred CCEEEE-----------ECCCHHHHHHHHHHHccCCEEEEEEeCCccccCHHHHHHHHhCCCcEEEeCCEEEEEEcCCcE
Confidence 344444 899999999999999999999999998754211 0 112456677888887653
Q ss_pred --eEE---cCCCEe----ecCE----EEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccc---c
Q psy12350 317 --VRF---QDGSYE----QVDI----ILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYR---Y 380 (1129)
Q Consensus 317 --v~~---~dg~~~----~~D~----VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~---~ 380 (1129)
+.+ .+|++. ++|. ||+|+|++++..++.. .+..+++..+....+ +..+.|++|.+|.... .
T Consensus 212 ~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~--~l~l~~~G~I~vd~~-~~Ts~p~IyAaGDv~~~~~~ 288 (555)
T TIGR03143 212 RYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKG--VVELDKRGYIPTNED-METNVPGVYAAGDLRPKELR 288 (555)
T ss_pred EEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhh--hcccCCCCeEEeCCc-cccCCCCEEEceeccCCCcc
Confidence 233 356543 3666 9999999999998764 244444332222222 2247899999999742 1
Q ss_pred cccccccceeeehhhcccccccc
Q psy12350 381 PFLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 381 ~~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
++..+..||+.+|.++...+.+.
T Consensus 289 ~v~~A~~~G~~Aa~~i~~~l~~~ 311 (555)
T TIGR03143 289 QVVTAVADGAIAATSAERYVKEL 311 (555)
T ss_pred hheeHHhhHHHHHHHHHHHHHhh
Confidence 33445588989888887766544
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-19 Score=214.41 Aligned_cols=269 Identities=16% Similarity=0.193 Sum_probs=158.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC-CcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD-NVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~-~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.+||+||||||||++||.+|++ .+.+|+|+|+.+ .+||+|.+ .+|. |.+...+.. .. ..+|
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~--~g~~V~lie~~~~~~GG~~~~---~gci----p~k~l~~~~-~~--------~~~~ 64 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAK--AGWRVALIEQSNAMYGGTCIN---IGCI----PTKTLVHDA-QQ--------HTDF 64 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHH--CCCeEEEEcCCCCccceeEee---cccc----chHHHHHHh-cc--------CCCH
Confidence 4899999999999999999999 669999999976 58999983 3431 111111111 00 0011
Q ss_pred CCCCCCCCCCCCHHHHHHHHHH-----HHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeee
Q psy12350 88 HHKGHPDKSYIAANDVLEYLND-----FADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRF 162 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~-----~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 162 (1129)
+ ......+++.++++. ..+..++ .+..+ ++..++. ..+.+.+ .+....+.||
T Consensus 65 ~------~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~i~~-------~~~~v~~--~~g~~~~~~d----- 121 (441)
T PRK08010 65 V------RAIQRKNEVVNFLRNKNFHNLADMPNI--DVIDG-QAEFINN-------HSLRVHR--PEGNLEIHGE----- 121 (441)
T ss_pred H------HHHHHHHHHHHHHHHhHHHHHhhcCCc--EEEEE-EEEEecC-------CEEEEEe--CCCeEEEEeC-----
Confidence 0 001112233344322 1111122 33322 3433332 2333332 1112246789
Q ss_pred EEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccc
Q psy12350 163 FLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSED 242 (1129)
Q Consensus 163 ~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 242 (1129)
+||+||| +.|..|++||... ..+ ..... ....
T Consensus 122 ~lviATG--s~p~~p~i~G~~~--~~~---------------v~~~~-----------------------------~~~~ 153 (441)
T PRK08010 122 KIFINTG--AQTVVPPIPGITT--TPG---------------VYDST-----------------------------GLLN 153 (441)
T ss_pred EEEEcCC--CcCCCCCCCCccC--CCC---------------EEChh-----------------------------Hhhc
Confidence 9999999 8888888877311 001 00000 0000
Q ss_pred cccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCC
Q psy12350 243 FTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPD 308 (1129)
Q Consensus 243 ~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~ 308 (1129)
+. ...++++| ||+|++|+|+|..|++.|.+|+++++++.+++...++ ++..+..
T Consensus 154 ~~-~~~~~v~V-----------iGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~ 221 (441)
T PRK08010 154 LK-ELPGHLGI-----------LGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAH 221 (441)
T ss_pred cc-ccCCeEEE-----------ECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCE
Confidence 10 01233333 8999999999999999999999999988776543221 3455677
Q ss_pred ceEEcCC--ceEEc-CCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEeccccc
Q psy12350 309 IAELTPT--GVRFQ-DGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYR 379 (1129)
Q Consensus 309 v~~~~~~--~v~~~-dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~ 379 (1129)
|++++++ ++.+. ++.++++|.||+|+|.+++..++. ...++..+++..+....++ .++.|++|.+|....
T Consensus 222 v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~-~Ts~~~IyA~GD~~~ 295 (441)
T PRK08010 222 VERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYL-HTTADNIWAMGDVTG 295 (441)
T ss_pred EEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCc-ccCCCCEEEeeecCC
Confidence 8888643 34332 233589999999999999988753 2355666554433332222 257899999998754
|
|
| >KOG0405|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-19 Score=187.26 Aligned_cols=261 Identities=21% Similarity=0.296 Sum_probs=174.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
.+..+||+|+.|+++|+.....| .++.++|..-.+||+|.. .||-+ -+-.+|-+.... ++..-.+|-|
T Consensus 21 fDylvIGgGSGGvasARrAa~~G--Akv~l~E~~f~lGGTCVn---~GCVP----KKvm~~~a~~~~---~~~da~~yG~ 88 (478)
T KOG0405|consen 21 FDYLVIGGGSGGVASARRAASHG--AKVALCELPFGLGGTCVN---VGCVP----KKVMWYAADYSE---EMEDAKDYGF 88 (478)
T ss_pred cceEEEcCCcchhHHhHHHHhcC--ceEEEEecCCCcCceEEe---ecccc----ceeEEehhhhhH---HhhhhhhcCC
Confidence 35679999999999999999999 999999987799999984 46622 111111111110 0000011111
Q ss_pred CCCCCCC--------------------------------------------------------CCChhhhhhccCCCCCC
Q psy12350 820 KGNADKS--------------------------------------------------------YIGAKDVLENYNHPIYP 843 (1129)
Q Consensus 820 ~~~~~~~--------------------------------------------------------~~~~~~v~~~~~~P~~P 843 (1129)
+.+.... |....-+.++|++|.+|
T Consensus 89 ~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~P 168 (478)
T KOG0405|consen 89 PINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIP 168 (478)
T ss_pred ccccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCC
Confidence 1100001 11111122299999999
Q ss_pred CCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCcc-chhhhhccccEEEEec
Q psy12350 844 EFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD-ITLDIATRASTVFLSH 922 (1129)
Q Consensus 844 ~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~-~~~~~~~~~~~~~~~~ 922 (1129)
+|||.+- -+.|..+.+.+++ .||++|||+|++|+|+|.-++.+|.+++++-|....+. +++.++..+.+.+.
T Consensus 169 nIpG~E~----gidSDgff~Lee~-Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~-- 241 (478)
T KOG0405|consen 169 NIPGAEL----GIDSDGFFDLEEQ-PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLE-- 241 (478)
T ss_pred CCCchhh----ccccccccchhhc-CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhh--
Confidence 9999863 4677777777766 79999999999999999999999999999877554432 22222222211111
Q ss_pred CCccccccCCCCCeEEcCC--eeEEeC--Cc---EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCccc--cc
Q psy12350 923 HSERVTSLCLPNNVVLKPD--VAELTP--TG---VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQ--PL 992 (1129)
Q Consensus 923 ~~~~~~~~~~~~~V~~~~~--i~~v~~--~~---V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~--~l 992 (1129)
..+|.+++. +.++.. ++ +....|+...+|.++||+|..|+..-|. +..|+++++++.. +.
T Consensus 242 ----------~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDe 311 (478)
T KOG0405|consen 242 ----------GRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDE 311 (478)
T ss_pred ----------hcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEec
Confidence 125666654 555533 22 4556676667999999999999977665 4578999887764 45
Q ss_pred ccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcC
Q psy12350 993 YKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQG 1032 (1129)
Q Consensus 993 y~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g 1032 (1129)
|.++ +.|+|+++|++..- ...|++-+.+|-+|..+-|
T Consensus 312 Yq~T---nvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~ 349 (478)
T KOG0405|consen 312 YQNT---NVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFG 349 (478)
T ss_pred cccC---CCCceEEeccccCcEecchHHHhhhhhHHHHhhc
Confidence 6655 89999999998754 4568999999988877655
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-19 Score=215.15 Aligned_cols=291 Identities=14% Similarity=0.170 Sum_probs=168.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||+||||||||++||.+|++ .|.+|+|+|+ +.+||+|.+ .+|. |.+...... . +...+.+...+.+
T Consensus 2 yDvvVIG~G~aGl~aA~~la~--~G~~v~lie~-~~~GG~~~~---~gc~----Psk~l~~~~-~--~~~~~~~~~~~g~ 68 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQ--LGLKVALVEK-EYLGGTCLN---VGCI----PTKALLHSA-E--VYDEIKHAKDYGI 68 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHh--CCCeEEEEec-CCCCCceee---cCcc----chHHHHHHh-h--HHHHHHHHHhcCC
Confidence 799999999999999999999 6799999999 889999984 3432 211111100 0 0000001111111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHh-----------cCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADN-----------FNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDL 158 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~-----------~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 158 (1129)
.. .....+...+.++.+...++ .++ .+..++ +..+ +...+.+.+ .+......||
T Consensus 69 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g~-~~~~-------~~~~~~v~~--~~g~~~~~~d- 133 (461)
T TIGR01350 69 EV--ENVSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKV--TVIKGE-AKFL-------DPGTVLVTG--ENGEETLTAK- 133 (461)
T ss_pred CC--CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEE-EEEc-------cCCEEEEec--CCCcEEEEeC-
Confidence 10 01123444454444333322 222 222222 2111 223343432 1112356799
Q ss_pred eeeeEEEEecccCCCCCccccc-cchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccc
Q psy12350 159 QVRFFLQLMQGHVTLPSKAEML-ADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFA 237 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~~p~~p~i~-g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 237 (1129)
+|||||| +.|+.|++| +. .+. ..+
T Consensus 134 ----~lVlAtG--~~p~~~~~~~~~-----~~~-------------~~~------------------------------- 158 (461)
T TIGR01350 134 ----NIIIATG--SRPRSLPGPFDF-----DGE-------------VVI------------------------------- 158 (461)
T ss_pred ----EEEEcCC--CCCCCCCCCCCC-----CCc-------------eEE-------------------------------
Confidence 9999999 788877664 10 000 000
Q ss_pred cccccccc-ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CC
Q psy12350 238 RCSEDFTE-FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NN 302 (1129)
Q Consensus 238 ~~~~~~~~-~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~ 302 (1129)
...+.+.. ...++++| ||||++|+|+|..|++.+.+|++++|.+.+++...+ -+
T Consensus 159 ~~~~~~~~~~~~~~vvV-----------iGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~ 227 (461)
T TIGR01350 159 TSTGALNLKEVPESLVI-----------IGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVK 227 (461)
T ss_pred cchHHhccccCCCeEEE-----------ECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCE
Confidence 00000100 01233333 899999999999999999999999998877653221 14
Q ss_pred eEEcCCceEEcC--Cce--EEcCC--CEeecCEEEEcccccccCC--CCCCCCCeEeecCcccccccccccCCCCCeEEe
Q psy12350 303 VVKKPDIAELTP--TGV--RFQDG--SYEQVDIILYCTGYTYRYP--FLHESCGIKVVNKNVQPLYKHLINIEHPSMCII 374 (1129)
Q Consensus 303 i~~~~~v~~~~~--~~v--~~~dg--~~~~~D~VI~atG~~~~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~ 374 (1129)
+..+..|++++. +++ .+.+| +++++|.||+|+|.+++.+ ++. ..++..+.+..+....++ -.+.|++|.+
T Consensus 228 i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-~~gl~~~~~g~i~vd~~l-~t~~~~Iyai 305 (461)
T TIGR01350 228 ILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLE-NLGVELDERGRIVVDEYM-RTNVPGIYAI 305 (461)
T ss_pred EEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcH-hhCceECCCCcEeeCCCc-ccCCCCEEEe
Confidence 566777887763 344 44567 4789999999999999988 444 345565554433332222 2467999999
Q ss_pred cccccc----cccccccceeeehhhccc
Q psy12350 375 GYTYRY----PFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 375 G~~~~~----~~~~~~~~~~~~a~~~~~ 398 (1129)
|..... +.+. .|++.+|.++.+
T Consensus 306 GD~~~~~~~~~~A~--~~g~~aa~~i~~ 331 (461)
T TIGR01350 306 GDVIGGPMLAHVAS--HEGIVAAENIAG 331 (461)
T ss_pred eecCCCcccHHHHH--HHHHHHHHHHcC
Confidence 987432 2243 777777777654
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-19 Score=215.04 Aligned_cols=270 Identities=18% Similarity=0.228 Sum_probs=174.8
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccc--------------cccCccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHS--------------SMYKSLK 804 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~--------------~~y~~~~ 804 (1129)
..+++|||+|++|+.+|..|.+.| .+|+|||+++.+||+|.+. ||- |.+. ..|....
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G--~~v~liE~~~~~GG~~~~~---gci----psk~l~~~~~~~~~~~~~~~~~~~~ 75 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLG--KRVAVIERYRNVGGGCTHT---GTI----PSKALREAVLRLIGFNQNPLYSSYR 75 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCC--CEEEEEecccccccccccc---CCC----CHHHHHHHHHHHHHHhhhhhhcccC
Confidence 458899999999999999999999 9999999988999999743 442 2110 0000000
Q ss_pred ----ccccc-----------------ccccccCCC--------CCCC-------CC--CCCCChhhhhhccCCCCCCCCC
Q psy12350 805 ----TNLPK-----------------DLMELCGYG--------HKGN-------AD--KSYIGAKDVLENYNHPIYPEFK 846 (1129)
Q Consensus 805 ----~~~~~-----------------~~~~~~~~~--------~~~~-------~~--~~~~~~~~v~~~~~~P~~P~i~ 846 (1129)
.+... ....-.... .... .. ..+....-++++|+.|..|+++
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~ 155 (461)
T PRK05249 76 VKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDV 155 (461)
T ss_pred CcCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCC
Confidence 00000 000000000 0000 00 0122233344599999999887
Q ss_pred CCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCc
Q psy12350 847 GKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSE 925 (1129)
Q Consensus 847 G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 925 (1129)
+.+. -.++++.+..+.. ..+|+|+|||+|.+|+|+|..+++.|.+|+++++.+..++. .+.+.....+.
T Consensus 156 ~~~~--~~v~~~~~~~~~~-~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~------- 225 (461)
T PRK05249 156 DFDH--PRIYDSDSILSLD-HLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYH------- 225 (461)
T ss_pred CCCC--CeEEcHHHhhchh-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHH-------
Confidence 7542 2355555554433 34799999999999999999999999999999987765542 12221111111
Q ss_pred cccccCCCCCeEEcCC--eeEEe--CCc--EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceee
Q psy12350 926 RVTSLCLPNNVVLKPD--VAELT--PTG--VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTIN 998 (1129)
Q Consensus 926 ~~~~~~~~~~V~~~~~--i~~v~--~~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~ 998 (1129)
+. ..+|++..+ +.+++ +++ +++.+|+++++|.||+|+|++|+...+. +..|+.+++++...+..+ +.
T Consensus 226 --l~---~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~ 299 (461)
T PRK05249 226 --LR---DSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNEN-YQ 299 (461)
T ss_pred --HH---HcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCC-cc
Confidence 10 125665543 77775 333 4567888899999999999999987653 346778776554434333 34
Q ss_pred cCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 999 IEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 999 ~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 300 t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~ 335 (461)
T PRK05249 300 TAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGE 335 (461)
T ss_pred cCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 689999999998754 35688999999999999875
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-19 Score=211.57 Aligned_cols=265 Identities=19% Similarity=0.269 Sum_probs=170.5
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCc-----------cccccc-
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKS-----------LKTNLP- 808 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~-----------~~~~~~- 808 (1129)
+++|||+||+|+.+|..+.+.| ++|+|+|+ +.+||+|.. .||- |.+..++.. +-....
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G--~~V~lie~-~~~GG~c~~---~gci----Psk~l~~~a~~~~~~~~~~~~g~~~~~ 73 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANHG--AKVAIAEE-PRVGGTCVI---RGCV----PKKLMVYGSTFGGEFEDAAGYGWTVGK 73 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhCC--CcEEEEec-CccCceeec---CCcC----chHHHHHHHHHHHHHhhhHhcCcCCCC
Confidence 7899999999999999999999 99999998 579999984 3552 221100000 000000
Q ss_pred -------------ccccccc----------CCC--------CCCC------CCCCCCChhhhhhccCCCCCCCCCCCCCC
Q psy12350 809 -------------KDLMELC----------GYG--------HKGN------ADKSYIGAKDVLENYNHPIYPEFKGKDMC 851 (1129)
Q Consensus 809 -------------~~~~~~~----------~~~--------~~~~------~~~~~~~~~~v~~~~~~P~~P~i~G~~~f 851 (1129)
+....+. ... .... ....+....-++++|+.|..|++||.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~~- 152 (446)
T TIGR01424 74 ARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHEL- 152 (446)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCccc-
Confidence 0000000 000 0000 0011222233444999999999999753
Q ss_pred CCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCcccccc
Q psy12350 852 QIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSL 930 (1129)
Q Consensus 852 ~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 930 (1129)
.+.+.+..... ..+|+|+|||+|.+|+|+|..+++.|.+|+++++++..++. .+.......+. +.
T Consensus 153 ---~~~~~~~~~l~-~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~---------l~- 218 (446)
T TIGR01424 153 ---GITSNEAFHLP-TLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARN---------ME- 218 (446)
T ss_pred ---eechHHhhccc-ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHH---------HH-
Confidence 23333222222 23789999999999999999999999999999987654432 22221111110 11
Q ss_pred CCCCCeEEcCC--eeEEeC--Cc--EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCC
Q psy12350 931 CLPNNVVLKPD--VAELTP--TG--VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPT 1003 (1129)
Q Consensus 931 ~~~~~V~~~~~--i~~v~~--~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~ 1003 (1129)
..+|++..+ +.+++. ++ +++.+|+++++|.||+|+|++|+...|. +..|+++++++...+..+ +.++.||
T Consensus 219 --~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-~~Ts~~~ 295 (446)
T TIGR01424 219 --GRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEY-SRTSIPS 295 (446)
T ss_pred --HCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCC-CccCCCC
Confidence 125666554 777753 23 5667888899999999999999987653 447788776554333333 3458999
Q ss_pred cEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1004 MFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1004 l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
||++|++... ...+.+..||+.++..+.|.
T Consensus 296 IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~ 326 (446)
T TIGR01424 296 IYAVGDVTDRINLTPVAIMEATCFANTEFGN 326 (446)
T ss_pred EEEeeccCCCccchhHHHHHHHHHHHHHhcC
Confidence 9999999864 35589999999999998874
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-19 Score=215.85 Aligned_cols=273 Identities=15% Similarity=0.165 Sum_probs=169.8
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCcccc-
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPVHSS- 798 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~~~~- 798 (1129)
..+++|||+|++|+.+|+.|.+.| .+|+|+|+.+.+||+|.. .||-+ +|++....
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g--~~v~~ie~~~~~GG~c~n---~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 90 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHG--ARVTIIEGADVIGGCCVN---VGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPS 90 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEEccCcceeEecc---ccccccHHHHHHHHHHHHHhhccccCcccCCCc
Confidence 357899999999999999999999 999999998899999984 35521 01110000
Q ss_pred -ccCccc-------cccc----ccccccc-CCC-------CCCC--------CC--CCCCChhhhhhccCCCCCCCCCCC
Q psy12350 799 -MYKSLK-------TNLP----KDLMELC-GYG-------HKGN--------AD--KSYIGAKDVLENYNHPIYPEFKGK 848 (1129)
Q Consensus 799 -~y~~~~-------~~~~----~~~~~~~-~~~-------~~~~--------~~--~~~~~~~~v~~~~~~P~~P~i~G~ 848 (1129)
.+..+. .... ...++.. ... +... .. ..+....-|+++|+.|+.|++||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~ 170 (479)
T PRK14727 91 IDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGL 170 (479)
T ss_pred cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCc
Confidence 000000 0000 0000000 000 0000 00 012223334449999999999998
Q ss_pred CCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCcccc
Q psy12350 849 DMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVT 928 (1129)
Q Consensus 849 ~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1129)
+. ...+++.+.... ...+|+|+|||+|.+|+|+|..+++.|++|+++.+......+.+.+.....+. +
T Consensus 171 ~~--~~~~~~~~~l~~-~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~---------L 238 (479)
T PRK14727 171 MD--TPYWTSTEALFS-DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTAC---------F 238 (479)
T ss_pred Cc--cceecchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHH---------H
Confidence 64 233443332222 22469999999999999999999999999999987432222222222111111 1
Q ss_pred ccCCCCCeEEcCC--eeEEeC--Cc--EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCC
Q psy12350 929 SLCLPNNVVLKPD--VAELTP--TG--VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEH 1001 (1129)
Q Consensus 929 ~~~~~~~V~~~~~--i~~v~~--~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~ 1001 (1129)
. ..+|++..+ +++++. ++ +.+.+| ++++|.||+|+|+.|+..+|. +..|+++++++...+..+ +.++.
T Consensus 239 ~---~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~-~~Ts~ 313 (479)
T PRK14727 239 E---KEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPA-METSA 313 (479)
T ss_pred H---hCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCC-eecCC
Confidence 0 125666544 666643 33 333444 589999999999999988663 346788776554444433 34589
Q ss_pred CCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1002 PTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1002 p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
||||++|++... ...+.+..|++.++..+.|.
T Consensus 314 ~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~ 346 (479)
T PRK14727 314 PDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGG 346 (479)
T ss_pred CCEEEeeecCCcchhhhHHHHHHHHHHHHHcCC
Confidence 999999999865 45688999999999999874
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-19 Score=214.46 Aligned_cols=266 Identities=19% Similarity=0.272 Sum_probs=173.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccc---------------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLK--------------- 804 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~--------------- 804 (1129)
.+++|||+||+|+.+|..|.+.| .+|+|+|+. .+||+|.. .|| +|.+...+....
T Consensus 5 ~DvvVIG~GpaG~~aA~~~a~~G--~~V~liE~~-~~GG~c~n---~gc----iP~k~l~~~~~~~~~~~~~~~~~g~~~ 74 (450)
T PRK06116 5 YDLIVIGGGSGGIASANRAAMYG--AKVALIEAK-RLGGTCVN---VGC----VPKKLMWYGAQIAEAFHDYAPGYGFDV 74 (450)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEecc-chhhhhhc---cCc----chHHHHHHHHHHHHHHHhHHHhcCCCC
Confidence 47899999999999999999999 999999985 79999973 455 222110110000
Q ss_pred ----ccccc-------ccccc----------cCCCC--------CCC----CCCCCCChhhhhhccCCCCCCCCCCCCCC
Q psy12350 805 ----TNLPK-------DLMEL----------CGYGH--------KGN----ADKSYIGAKDVLENYNHPIYPEFKGKDMC 851 (1129)
Q Consensus 805 ----~~~~~-------~~~~~----------~~~~~--------~~~----~~~~~~~~~~v~~~~~~P~~P~i~G~~~f 851 (1129)
.+..+ ....+ ....+ ... ....+....-++++|+.|+.|++||.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~~g~~~~~d~lViATGs~p~~p~i~g~~~- 153 (450)
T PRK06116 75 TENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEVNGERYTADHILIATGGRPSIPDIPGAEY- 153 (450)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCCCCCCCCCCcce-
Confidence 00000 00000 00000 000 0001112223333999999999999752
Q ss_pred CCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCcccccc
Q psy12350 852 QIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSL 930 (1129)
Q Consensus 852 ~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 930 (1129)
++++.++..... .+|+|+|||+|.+|+|+|..|++.+.+|+++.+++..++. .+.+.....+ .+.
T Consensus 154 ---~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~---------~L~- 219 (450)
T PRK06116 154 ---GITSDGFFALEE-LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVE---------EME- 219 (450)
T ss_pred ---eEchhHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHH---------HHH-
Confidence 455554443332 3789999999999999999999999999999887654322 1111111111 010
Q ss_pred CCCCCeEEcCC--eeEEeC--Cc---EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCC
Q psy12350 931 CLPNNVVLKPD--VAELTP--TG---VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHP 1002 (1129)
Q Consensus 931 ~~~~~V~~~~~--i~~v~~--~~---V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p 1002 (1129)
..+|++..+ |.+++. ++ +.+.+|+++++|.||+|+|++|+.++|. +..|+++++++...+..+ +.++.|
T Consensus 220 --~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~Ts~~ 296 (450)
T PRK06116 220 --KKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEY-QNTNVP 296 (450)
T ss_pred --HCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCC-CCcCCC
Confidence 125666554 777753 22 5677899999999999999999988653 346788876654444433 346899
Q ss_pred CcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1003 TMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1003 ~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
|||++|++... ...+.+..||+.+|..+.|.
T Consensus 297 ~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 328 (450)
T PRK06116 297 GIYAVGDVTGRVELTPVAIAAGRRLSERLFNN 328 (450)
T ss_pred CEEEEeecCCCcCcHHHHHHHHHHHHHHHhCC
Confidence 99999998754 45689999999999999874
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-19 Score=212.03 Aligned_cols=302 Identities=16% Similarity=0.177 Sum_probs=164.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccc-cCCccccccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKT-NLPKEIMELSG 86 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~-~~~~~~~~~~d 86 (1129)
..+||+||||||||++||.+|++ .|.+|+|+|+. .+||+|.+ .||. | ...+...... ...+. ...
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~-~~GG~c~~---~gci----P-sk~l~~~a~~~~~~~~---~~~ 68 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQ--LGLKTALVEKG-KLGGTCLH---KGCI----P-SKALLHSAEVFQTAKK---ASP 68 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCeEEEEEcc-CCCcceEc---CCcC----c-hHHHHHHHHHHHHHHH---HHh
Confidence 45899999999999999999999 67999999995 79999994 4442 2 1111111000 00000 011
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHH-----------HHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDF-----------ADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL 155 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1129)
+.+... ....+...+.++.++. .++.++ .+..+ +++.++...-..+..++.+.. .+++...+.
T Consensus 69 ~g~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g-~a~~i~~~~~~~~~~~~~v~~-~~g~~~~~~ 142 (472)
T PRK05976 69 FGISVS--GPALDFAKVQERKDGIVDRLTKGVAALLKKGKI--DVFHG-IGRILGPSIFSPMPGTVSVET-ETGENEMII 142 (472)
T ss_pred cCccCC--CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEeCCCCCcCCceEEEEEe-CCCceEEEE
Confidence 111000 0012333344332222 222233 44433 233343310000111344432 222234578
Q ss_pred ecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccc
Q psy12350 156 FDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFES 235 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 235 (1129)
|| +|||||| +.|..|+... ..+ ....
T Consensus 143 ~d-----~lViATG--s~p~~~p~~~-----~~~---------------~~~~--------------------------- 168 (472)
T PRK05976 143 PE-----NLLIATG--SRPVELPGLP-----FDG---------------EYVI--------------------------- 168 (472)
T ss_pred cC-----EEEEeCC--CCCCCCCCCC-----CCC---------------ceEE---------------------------
Confidence 99 9999999 7775442110 000 0000
Q ss_pred ccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------C
Q psy12350 236 FARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------N 301 (1129)
Q Consensus 236 ~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~ 301 (1129)
...+.+.... ++++++| ||||++|+|+|..|++.|.+|||++|.+.+++...+ -
T Consensus 169 --~~~~~~~~~~------~~~~vvI----IGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI 236 (472)
T PRK05976 169 --SSDEALSLET------LPKSLVI----VGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGV 236 (472)
T ss_pred --cchHhhCccc------cCCEEEE----ECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCC
Confidence 0000000000 1233333 899999999999999999999999998876654221 1
Q ss_pred CeEEcCCceEEc---CCce---EEcCCC--EeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeE
Q psy12350 302 NVVKKPDIAELT---PTGV---RFQDGS--YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMC 372 (1129)
Q Consensus 302 ~i~~~~~v~~~~---~~~v---~~~dg~--~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~ 372 (1129)
++..++.|++++ ++++ .+.+|+ ++++|.||+|+|.+++.+.+. +..++..+ +..+....++ .++.|++|
T Consensus 237 ~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~-~g~i~Vd~~l-~ts~~~Iy 314 (472)
T PRK05976 237 RVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVE-GGFIQIDDFC-QTKERHIY 314 (472)
T ss_pred EEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceec-CCEEEECCCc-ccCCCCEE
Confidence 456677788886 3443 345674 579999999999999988653 22333332 2222222222 24678999
Q ss_pred Eeccccccc-c-cccccceeeehhhcc
Q psy12350 373 IIGYTYRYP-F-LHESCGIKVVNKNVQ 397 (1129)
Q Consensus 373 ~~G~~~~~~-~-~~~~~~~~~~a~~~~ 397 (1129)
.+|.....| + .....|++.+|.++.
T Consensus 315 AiGD~~~~~~~~~~A~~~g~~aa~~i~ 341 (472)
T PRK05976 315 AIGDVIGEPQLAHVAMAEGEMAAEHIA 341 (472)
T ss_pred EeeecCCCcccHHHHHHHHHHHHHHHc
Confidence 999874322 1 112266666666654
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-19 Score=221.55 Aligned_cols=269 Identities=13% Similarity=0.173 Sum_probs=159.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+|||||||||+||.+|++ .|++|+|||+++.+||++.+. +++|.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr--~G~~VTV~Ek~~~lGG~l~~~------------------------------IP~~r 584 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLAR--AGHPVTVFEKKEKPGGVVKNI------------------------------IPEFR 584 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCeEEEEecccccCceeeec------------------------------ccccC
Confidence 4799999999999999999999 669999999999999998741 01111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
.+ .+++++..+....+|+ .+++++... + ++. ......|| +|||||
T Consensus 585 ---------lp-~e~l~~~ie~l~~~GV--e~~~g~~~d-~------------~ve-----~l~~~gYD-----aVIIAT 629 (1012)
T TIGR03315 585 ---------IS-AESIQKDIELVKFHGV--EFKYGCSPD-L------------TVA-----ELKNQGYK-----YVILAI 629 (1012)
T ss_pred ---------CC-HHHHHHHHHHHHhcCc--EEEEecccc-e------------Ehh-----hhhccccc-----EEEECC
Confidence 01 2344444455556665 666664211 0 010 11123489 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
|.. .+..+.+||.....+. ...++..+ .. .
T Consensus 630 GA~-~~~~l~I~G~~~~v~~------------------avefL~~~-----------------------~~--------~ 659 (1012)
T TIGR03315 630 GAW-KHGPLRLEGGGERVLK------------------SLEFLRAF-----------------------KE--------G 659 (1012)
T ss_pred CCC-CCCCCCcCCCCcceee------------------HHHHHHHh-----------------------hc--------c
Confidence 942 2334455542110000 00010000 00 0
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhccc-c-cEEEEccccCC-cccccC-------CC--CeEEcCCceEEcCCc
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTE-A-TTVFLSHHSEH-VKKLRF-------PN--NVVKKPDIAELTPTG 316 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~-~-~~V~lv~r~~~-~~~~~~-------~~--~i~~~~~v~~~~~~~ 316 (1129)
...+..|++|+| ||||++|+|+|..+.+. | ++|++++|+.. .++... .+ ++.....+.+++++.
T Consensus 660 ~~~~~~GK~VVV----IGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~aleeGVe~~~~~~p~~I~~g~ 735 (1012)
T TIGR03315 660 PTINPLGKHVVV----VGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEALEDGVDFKELLSPESFEDGT 735 (1012)
T ss_pred ccccccCCeEEE----ECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHHHHHHcCCEEEeCCceEEEECCe
Confidence 001112455555 89999999999988775 5 68999998763 222111 11 233334444444322
Q ss_pred e-----------------EEcCCC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccc
Q psy12350 317 V-----------------RFQDGS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYT 377 (1129)
Q Consensus 317 v-----------------~~~dg~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~ 377 (1129)
+ ...+|+ ++++|.||+|+|++++..+++ ..++..+.+..+.........+.|++|.+|..
T Consensus 736 l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle-~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~ 814 (1012)
T TIGR03315 736 LTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQ-KNGIPLDEYGWPVVNQATGETNITNVFVIGDA 814 (1012)
T ss_pred EEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHH-hcCcccCCCCCEEeCCCCCccCCCCEEEEeCc
Confidence 2 122344 479999999999999998886 45566655444333333334678999999987
Q ss_pred cccc--ccccccceeeehhhcccc
Q psy12350 378 YRYP--FLHESCGIKVVNKNVQPL 399 (1129)
Q Consensus 378 ~~~~--~~~~~~~~~~~a~~~~~~ 399 (1129)
...| ...+..||+.+|.++.+.
T Consensus 815 a~GP~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 815 NRGPATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred CCCccHHHHHHHHHHHHHHHHhcc
Confidence 5432 234458888888887653
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-19 Score=222.72 Aligned_cols=282 Identities=17% Similarity=0.221 Sum_probs=167.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||..|++ .|++|+|||+.+.+||++.|. +++|
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~--~G~~V~v~e~~~~~GG~l~~g------------------------------ip~~ 477 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAK--RGYDVTVFEALHEIGGVLKYG------------------------------IPEF 477 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCeeeec------------------------------CCCC
Confidence 45799999999999999999999 679999999999999998851 1111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
.+| .++.+...+...++++ .+++++.|.. .+++. ......|| +||||
T Consensus 478 rlp----------~~~~~~~~~~l~~~gv--~~~~~~~v~~-----------~v~~~-----~l~~~~yd-----avvlA 524 (752)
T PRK12778 478 RLP----------KKIVDVEIENLKKLGV--KFETDVIVGK-----------TITIE-----ELEEEGFK-----GIFIA 524 (752)
T ss_pred CCC----------HHHHHHHHHHHHHCCC--EEECCCEECC-----------cCCHH-----HHhhcCCC-----EEEEe
Confidence 111 1344444455566666 6777765521 11111 11223589 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccc-hhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSE-KYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||. +.|+.|++||... .| .++. .|+.... ....+.......
T Consensus 525 tGa-~~~~~l~ipG~~~---~g---------------V~~~~~~l~~~~-----------------~~~~~~~~~~~~-- 566 (752)
T PRK12778 525 SGA-GLPNFMNIPGENS---NG---------------VMSSNEYLTRVN-----------------LMDAASPDSDTP-- 566 (752)
T ss_pred CCC-CCCCCCCCCCCCC---CC---------------cEEHHHHHHHHh-----------------hcccccccccCc--
Confidence 993 2578888877321 11 1111 1110000 000000000000
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccE-EEEccccCCc-ccccC-------CC--CeEEcCCceEEcC-
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATT-VFLSHHSEHV-KKLRF-------PN--NVVKKPDIAELTP- 314 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~-V~lv~r~~~~-~~~~~-------~~--~i~~~~~v~~~~~- 314 (1129)
...|++|+| ||||++|+|+|..+.+.|.+ ||+++|++.. ++... .. ++.....+.++.+
T Consensus 567 -----~~~gk~VvV----IGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~ 637 (752)
T PRK12778 567 -----IKFGKKVAV----VGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTLHNPIEYLAD 637 (752)
T ss_pred -----ccCCCcEEE----ECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEecCcceEEEEC
Confidence 112344444 89999999999999999876 9999987531 11110 11 3334455555532
Q ss_pred -Cc----eEEc---------C---------CC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCC
Q psy12350 315 -TG----VRFQ---------D---------GS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHP 369 (1129)
Q Consensus 315 -~~----v~~~---------d---------g~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p 369 (1129)
++ |.+. + |+ ++++|.||+|+|++++..++....++.++.+..+....+. .++.|
T Consensus 638 ~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~-~Ts~~ 716 (752)
T PRK12778 638 EKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEM-QSSIP 716 (752)
T ss_pred CCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCC-CCCCC
Confidence 11 3331 2 22 4799999999999999877654335565544333222222 46789
Q ss_pred CeEEeccccccc--ccccccceeeehhhccccccc
Q psy12350 370 SMCIIGYTYRYP--FLHESCGIKVVNKNVQPLYKH 402 (1129)
Q Consensus 370 ~l~~~G~~~~~~--~~~~~~~~~~~a~~~~~~~~~ 402 (1129)
++|.+|.....| ...+..+++.+|.++...+.+
T Consensus 717 gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 717 GIYAGGDIVRGGATVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred CEEEeCCccCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999886432 233458888888887766544
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-19 Score=211.41 Aligned_cols=267 Identities=16% Similarity=0.215 Sum_probs=171.8
Q ss_pred cCccccccCCchhhHHHHHHhh-CCCcceEEEccc--------CCcCcccccCCCCCCCCCCCCccccccC---------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEA-GNGFTCTTFEQA--------DNIGGTWLYTEHIGCDQYGLPVHSSMYK--------- 801 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~-g~~~~v~v~E~~--------~~~GG~w~~~~~~g~~~~g~p~~~~~y~--------- 801 (1129)
.+++|||+|++|..+|..+.+. | .+|+|+|+. +.+||+|.. .||- |.+..++.
T Consensus 4 ~DviVIG~G~~G~~aA~~aa~~~g--~~V~lie~~~~~~~~~~~~~GGtCln---~GCi----PsK~l~~~a~~~~~~~~ 74 (486)
T TIGR01423 4 FDLVVIGAGSGGLEAGWNAATLYK--KRVAVIDVQTHHGPPHYAALGGTCVN---VGCV----PKKLMVTGAQYMDTLRE 74 (486)
T ss_pred cCEEEECCChHHHHHHHHHHHhcC--CEEEEEecccCccccccCCccCeecC---cCCc----cHHHHHHHHHHHHHHHH
Confidence 3789999999999999999997 8 999999984 579999984 4662 21110000
Q ss_pred ----cc-------ccccc--------------c---cccc-ccCCC-------CCCCCC--------------CCCCChh
Q psy12350 802 ----SL-------KTNLP--------------K---DLME-LCGYG-------HKGNAD--------------KSYIGAK 831 (1129)
Q Consensus 802 ----~~-------~~~~~--------------~---~~~~-~~~~~-------~~~~~~--------------~~~~~~~ 831 (1129)
.. ..+.. . ...+ ..... +..... ..+....
T Consensus 75 ~~~~gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~ 154 (486)
T TIGR01423 75 SAGFGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEH 154 (486)
T ss_pred hhccCeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCE
Confidence 00 00000 0 0000 00000 000000 0112222
Q ss_pred hhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhc---CCEEEEEecCCCCccc-
Q psy12350 832 DVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATT---GKQAVVVGSGQSGLDI- 907 (1129)
Q Consensus 832 ~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~---~~~V~vv~~~~~~~~~- 907 (1129)
-++++|+.|..|++||.+. ++.+.+..... -.+|+|+|||+|.+|+|+|..++.. |.+||++++.+..++.
T Consensus 155 lIIATGs~p~~p~i~G~~~----~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~ 229 (486)
T TIGR01423 155 ILLATGSWPQMLGIPGIEH----CISSNEAFYLD-EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGF 229 (486)
T ss_pred EEEecCCCCCCCCCCChhh----eechhhhhccc-cCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccccc
Confidence 3344999999999999753 33333322222 2479999999999999999877654 8999999987765542
Q ss_pred hhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC--C---cEEecCCcEeeccEEEEccCccCcCCCCC-CC
Q psy12350 908 TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP--T---GVRFQDGSYEQVDIILCCTGYSNHYPFLH-ES 979 (1129)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~---~V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~ 979 (1129)
.+.+.....+.+. ..+|+++.+ +++++. + .+.+.+|+++++|.||+|||++|+..++. +.
T Consensus 230 d~~~~~~l~~~L~------------~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~ 297 (486)
T TIGR01423 230 DSTLRKELTKQLR------------ANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDK 297 (486)
T ss_pred CHHHHHHHHHHHH------------HcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchh
Confidence 2222222221111 125666554 777753 2 26677888999999999999999988764 34
Q ss_pred CCeeecCCcccccccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 980 CGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 980 ~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.|+++++++...+..++ .++.||||++|++... ...+.+..|++.++..+.|.
T Consensus 298 ~gl~~~~~G~I~Vd~~l-~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 298 VGVELTKKGAIQVDEFS-RTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred hCceECCCCCEecCCCC-cCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 67888766544443333 4689999999999865 35688999999999999874
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-19 Score=209.96 Aligned_cols=132 Identities=18% Similarity=0.202 Sum_probs=91.2
Q ss_pred CCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCeEEcCCceEEcCC--c--eEEcCC----
Q psy12350 265 AANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNVVKKPDIAELTPT--G--VRFQDG---- 322 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i~~~~~v~~~~~~--~--v~~~dg---- 322 (1129)
||+|++|+|+|..|++.+.+||++++.+.+++...+ -++..+..|++++++ + +.+.++
T Consensus 189 vGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~ 268 (475)
T PRK06327 189 IGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEA 268 (475)
T ss_pred ECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCce
Confidence 899999999999999999999999998876553221 145556778888643 3 455553
Q ss_pred CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccccccc--cccccceeeehhhcc
Q psy12350 323 SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYPF--LHESCGIKVVNKNVQ 397 (1129)
Q Consensus 323 ~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~~--~~~~~~~~~~a~~~~ 397 (1129)
+++++|.||+|+|++++.++|. +..++..+++..+....++ ..+.|++|++|.....|. ..+..|++.+|.++.
T Consensus 269 ~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~-~Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~ 345 (475)
T PRK06327 269 QTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHC-RTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIA 345 (475)
T ss_pred eEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCC-ccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHc
Confidence 4689999999999999998653 2355666555443333332 257899999998753221 112266666666654
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.6e-19 Score=208.35 Aligned_cols=273 Identities=16% Similarity=0.216 Sum_probs=173.1
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCcc---
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPVH--- 796 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~~--- 796 (1129)
..+++|||+||+|+.+|..+.+.| ++|+|+|+. .+||+|.. .||-+ +|++..
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G--~~v~lie~~-~~GG~c~~---~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 78 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLG--MKVALIERG-LLGGTCVN---TGCVPTKTLIASARAAHLARRAAEYGVSVGGPV 78 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCC--CeEEEEecC-ccCCceec---cccCcHHHHHHHHHHHHHHHHHHhcCcccCccC
Confidence 458999999999999999999999 999999985 79999974 35521 122110
Q ss_pred ccccCccccc-------ccccc-cccc---CCCCC-------CC-----CCCCCCChhhhhhccCCCCCCCCCCCCCCCC
Q psy12350 797 SSMYKSLKTN-------LPKDL-MELC---GYGHK-------GN-----ADKSYIGAKDVLENYNHPIYPEFKGKDMCQI 853 (1129)
Q Consensus 797 ~~~y~~~~~~-------~~~~~-~~~~---~~~~~-------~~-----~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g 853 (1129)
..-+..+... ..... ..+. +..+- .. ....+....-++++|+.|+.|++||.+. -
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v~~~~~~~d~lViATGs~p~~p~i~G~~~--~ 156 (463)
T PRK06370 79 SVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVGGETLRAKRIFINTGARAAIPPIPGLDE--V 156 (463)
T ss_pred ccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEECcEEEEeCEEEEcCCCCCCCCCCCCCCc--C
Confidence 0000000000 00000 0000 00000 00 0001112223344999999999999865 2
Q ss_pred cEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccch-hhhhccccEEEEecCCccccccCC
Q psy12350 854 PILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDIT-LDIATRASTVFLSHHSERVTSLCL 932 (1129)
Q Consensus 854 ~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1129)
.++++.+..+.. ..+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++.. +.......+. +.
T Consensus 157 ~~~~~~~~~~~~-~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~---------l~--- 223 (463)
T PRK06370 157 GYLTNETIFSLD-ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREI---------LE--- 223 (463)
T ss_pred ceEcchHhhCcc-ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHH---------HH---
Confidence 355665554433 247999999999999999999999999999999876554321 1111111110 10
Q ss_pred CCCeEEcCC--eeEEeCC--c--EEec---CCcEeeccEEEEccCccCcCCCC-CCCCCeeecCCcccccccceeecCCC
Q psy12350 933 PNNVVLKPD--VAELTPT--G--VRFQ---DGSYEQVDIILCCTGYSNHYPFL-HESCGIKVVNKNVQPLYKHTINIEHP 1002 (1129)
Q Consensus 933 ~~~V~~~~~--i~~v~~~--~--V~~~---dG~~~~~D~VI~aTG~~~~~~fl-~~~~g~~~~~~~~~~ly~~~~~~~~p 1002 (1129)
..+|++..+ +.+++++ + +.+. +++++++|.||+|+|++|+...| -+..|+.+++++...+..+ +.++.|
T Consensus 224 ~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-l~t~~~ 302 (463)
T PRK06370 224 REGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQ-LRTTNP 302 (463)
T ss_pred hCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcC-CcCCCC
Confidence 125666654 7777643 2 3332 34568999999999999998744 2346788776654444443 346899
Q ss_pred CcEEEccccccc-hhHHHHHHHHHHHHHHcCC
Q psy12350 1003 TMFILGVPRHTL-LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1003 ~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~ 1033 (1129)
|||++|++.... ....+..||+.+|+++.|.
T Consensus 303 ~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 303 GIYAAGDCNGRGAFTHTAYNDARIVAANLLDG 334 (463)
T ss_pred CEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 999999987653 4578999999999999864
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-19 Score=211.20 Aligned_cols=267 Identities=16% Similarity=0.201 Sum_probs=166.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcccccc-----C---------cccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMY-----K---------SLKT 805 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y-----~---------~~~~ 805 (1129)
.+++|||+|++|+++|..|.+.| .+|+|||+. .+||+|.. +|| +|.+.... . .+..
T Consensus 7 ~dviVIGaG~aG~~aA~~l~~~g--~~v~lie~~-~~GGtc~n---~Gc----iPsk~l~~~a~~~~~~~~~~~~~g~~~ 76 (468)
T PRK14694 7 LHIAVIGSGGSAMAAALKATERG--ARVTLIERG-TIGGTCVN---IGC----VPSKIMIRAAHIAHLRRESPFDDGLSA 76 (468)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CcEEEEEcc-ccccceec---CCc----cccHHHHHHHHHHHHHhhccccCCccc
Confidence 37899999999999999999999 999999985 79999983 676 23221000 0 0000
Q ss_pred c-----cc-------cccc------------cccCCCC--------CCC-C------C--CCCCChhhhhhccCCCCCCC
Q psy12350 806 N-----LP-------KDLM------------ELCGYGH--------KGN-A------D--KSYIGAKDVLENYNHPIYPE 844 (1129)
Q Consensus 806 ~-----~~-------~~~~------------~~~~~~~--------~~~-~------~--~~~~~~~~v~~~~~~P~~P~ 844 (1129)
. .. .... ......+ ... + . ..+....-++++|+.|+.|+
T Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~ 156 (468)
T PRK14694 77 QAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPP 156 (468)
T ss_pred CCCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCC
Confidence 0 00 0000 0000000 000 0 0 01111223334999999999
Q ss_pred CCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCC
Q psy12350 845 FKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHS 924 (1129)
Q Consensus 845 i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 924 (1129)
+||++++ .++++.+..... ..+|+|+|||+|.+|+|+|..|++.+.+|+++.+........+.+.....+.
T Consensus 157 i~G~~~~--~~~~~~~~~~l~-~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~------ 227 (468)
T PRK14694 157 VPGLAET--PYLTSTSALELD-HIPERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAA------ 227 (468)
T ss_pred CCCCCCC--ceEcchhhhchh-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHH------
Confidence 9998763 355554433222 2479999999999999999999999999999976422111222221111111
Q ss_pred ccccccCCCCCeEEcCC--eeEEeCCc--EEe-cCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceee
Q psy12350 925 ERVTSLCLPNNVVLKPD--VAELTPTG--VRF-QDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTIN 998 (1129)
Q Consensus 925 ~~~~~~~~~~~V~~~~~--i~~v~~~~--V~~-~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~ 998 (1129)
+. ..+|+++.+ +.+++.++ +.+ .++.++++|.||+|+|.+|+..++. +.+|++.++.. ..+..+ +.
T Consensus 228 ---l~---~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~-i~vd~~-~~ 299 (468)
T PRK14694 228 ---FR---REGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVETERGA-IRIDEH-LQ 299 (468)
T ss_pred ---HH---hCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCCCCchhcCcccCCCe-EeeCCC-cc
Confidence 11 125666554 77775432 222 2344699999999999999988764 33566654332 233333 34
Q ss_pred cCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 999 IEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 999 ~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
++.||||++|++... ...+.+..|++.+|..+.|.
T Consensus 300 Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~ 335 (468)
T PRK14694 300 TTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGG 335 (468)
T ss_pred cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCC
Confidence 589999999999754 45688899999999999764
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.4e-19 Score=215.71 Aligned_cols=273 Identities=15% Similarity=0.156 Sum_probs=168.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+|||||||||+||..|++ .|++|+|||+.+.+||.+.+. ++.|
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~--~G~~Vtv~e~~~~~GG~l~~g------------------------------ip~~- 239 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLR--KGHDVTIFDANEQAGGMMRYG------------------------------IPRF- 239 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCceeeec------------------------------CCCC-
Confidence 4799999999999999999999 679999999999999999851 1111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
....++.++..+...++|+ .+++++.+. ++ +++ .. ....|| +||+||
T Consensus 240 ---------~~~~~~~~~~~~~l~~~Gv--~i~~~~~v~-~d----------v~~---~~---~~~~~D-----aVilAt 286 (652)
T PRK12814 240 ---------RLPESVIDADIAPLRAMGA--EFRFNTVFG-RD----------ITL---EE---LQKEFD-----AVLLAV 286 (652)
T ss_pred ---------CCCHHHHHHHHHHHHHcCC--EEEeCCccc-Cc----------cCH---HH---HHhhcC-----EEEEEc
Confidence 1112444555555666766 777777542 10 001 00 012389 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCccccccccc-chhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRS-EKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|.. .+..+++||.. ..| ... ..++.. . ....
T Consensus 287 Ga~-~~~~~~ipG~~---~~g---------------v~~~~~~l~~----------------------~-~~~~------ 318 (652)
T PRK12814 287 GAQ-KASKMGIPGEE---LPG---------------VISGIDFLRN----------------------V-ALGT------ 318 (652)
T ss_pred CCC-CCCCCCCCCcC---cCC---------------cEeHHHHHHH----------------------h-hcCC------
Confidence 932 23456676631 111 100 001000 0 0000
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccc-cEEEEccccCC-ccccc---------CCCCeEEcCCceEEcC--
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA-TTVFLSHHSEH-VKKLR---------FPNNVVKKPDIAELTP-- 314 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~-~~V~lv~r~~~-~~~~~---------~~~~i~~~~~v~~~~~-- 314 (1129)
.+..|++|+| ||||++|+|+|..+.+.| ++|++++|+.. .++.. ..-++.....+.++.+
T Consensus 319 ---~~~~gk~VvV----IGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~eGV~i~~~~~~~~i~~~~ 391 (652)
T PRK12814 319 ---ALHPGKKVVV----IGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRELAAPVSIERSE 391 (652)
T ss_pred ---cccCCCeEEE----ECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCcEEeccCcEEEEecC
Confidence 0112444445 899999999999988887 57999998763 22211 1114445555666642
Q ss_pred Cce-----EEc---------------CCC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeE
Q psy12350 315 TGV-----RFQ---------------DGS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMC 372 (1129)
Q Consensus 315 ~~v-----~~~---------------dg~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~ 372 (1129)
+++ .+. +|+ ++++|.||+|+|+.++..++. ..++..+.+..+......+.++.|++|
T Consensus 392 ~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~-~~gl~~~~~G~I~vd~~~~~Ts~pgVf 470 (652)
T PRK12814 392 GGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAE-AAGIGTSRNGTVKVDPETLQTSVAGVF 470 (652)
T ss_pred CeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCccccc-ccCccccCCCcEeeCCCCCcCCCCCEE
Confidence 221 111 233 479999999999999998886 345665554444443334446789999
Q ss_pred Eecccccccc--cccccceeeehhhcccccccc
Q psy12350 373 IIGYTYRYPF--LHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 373 ~~G~~~~~~~--~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
.+|.....|- ..+..|++.+|.++...+.+.
T Consensus 471 A~GDv~~g~~~v~~Ai~~G~~AA~~I~~~L~g~ 503 (652)
T PRK12814 471 AGGDCVTGADIAINAVEQGKRAAHAIDLFLNGK 503 (652)
T ss_pred EcCCcCCCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9998764332 334588888888888777664
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-19 Score=210.18 Aligned_cols=269 Identities=18% Similarity=0.255 Sum_probs=174.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccC-CcCcccccCCCCCCCCCCCCccccccCc----------------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD-NIGGTWLYTEHIGCDQYGLPVHSSMYKS---------------- 802 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~-~~GG~w~~~~~~g~~~~g~p~~~~~y~~---------------- 802 (1129)
.+++|||+|++|+.+|..|.+.| .+|+|+|+.+ .+||+|.. .||- |.+...+..
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~g--~~V~lie~~~~~~GG~~~~---~gci----p~k~l~~~~~~~~~~~~~~~~~~~~ 74 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKAG--WRVALIEQSNAMYGGTCIN---IGCI----PTKTLVHDAQQHTDFVRAIQRKNEV 74 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHCC--CeEEEEcCCCCccceeEee---cccc----chHHHHHHhccCCCHHHHHHHHHHH
Confidence 48899999999999999999999 9999999976 48999973 3442 221100000
Q ss_pred ---cccccccccccccCCC--------CCCC-------CCC-CCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCC
Q psy12350 803 ---LKTNLPKDLMELCGYG--------HKGN-------ADK-SYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRT 863 (1129)
Q Consensus 803 ---~~~~~~~~~~~~~~~~--------~~~~-------~~~-~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~ 863 (1129)
+.......+....... .... ... .+.....++++|+.|..|++||++++.+ ++++.++.+
T Consensus 75 ~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~~-v~~~~~~~~ 153 (441)
T PRK08010 75 VNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPG-VYDSTGLLN 153 (441)
T ss_pred HHHHHHhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCCC-EEChhHhhc
Confidence 0000000000000000 0000 000 1222333445999999999999876654 566655544
Q ss_pred CCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCCCCeEEcCC-
Q psy12350 864 PEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD- 941 (1129)
Q Consensus 864 ~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~- 941 (1129)
.. ..+++|+|||+|.+|+|+|..|++.+.+|+++++++..++. .+.+.....+. +. ..+|+++.+
T Consensus 154 ~~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~---------l~---~~gV~v~~~~ 220 (441)
T PRK08010 154 LK-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATI---------LR---DQGVDIILNA 220 (441)
T ss_pred cc-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHH---------HH---hCCCEEEeCC
Confidence 33 34789999999999999999999999999999987655432 12121111111 11 125666543
Q ss_pred -eeEEeCC--cEEe--cCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCCcEEEcccccc-c
Q psy12350 942 -VAELTPT--GVRF--QDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-L 1014 (1129)
Q Consensus 942 -i~~v~~~--~V~~--~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~ 1014 (1129)
+.+++.+ .+.+ ++| ++++|.||+|+|.+|+..++. +..|+++++++...+..+ +.++.||||++|++... .
T Consensus 221 ~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~ 298 (441)
T PRK08010 221 HVERISHHENQVQVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKY-LHTTADNIWAMGDVTGGLQ 298 (441)
T ss_pred EEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCC-cccCCCCEEEeeecCCCcc
Confidence 7777542 3433 344 589999999999999987654 346788776554334333 35589999999999865 3
Q ss_pred hhHHHHHHHHHHHHHHcCC
Q psy12350 1015 LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1015 ~~~~~e~qa~~~a~~l~g~ 1033 (1129)
..+.+..|++.++..+.|.
T Consensus 299 ~~~~a~~~~~~~~~~~~g~ 317 (441)
T PRK08010 299 FTYISLDDYRIVRDELLGE 317 (441)
T ss_pred chhHHHHHHHHHHHHHcCC
Confidence 5588889999999998874
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-19 Score=205.61 Aligned_cols=284 Identities=16% Similarity=0.191 Sum_probs=170.5
Q ss_pred eEEEEcCChHHHHHHHHhhcC-CCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEP-GSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~-~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+|+|||||+||+.+|++|+++ .++++|+|+|+++.. .|.. .++...
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~----------------------~~~~---~~~~~~-------- 47 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT----------------------PYSG---MLPGMI-------- 47 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC----------------------cccc---hhhHHH--------
Confidence 599999999999999999753 467899999997641 1111 011000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
. ...+.+++...++++++++++ ++.. .+|+.|+. +...+.+. ....+.|| +||||||
T Consensus 48 ----~-g~~~~~~~~~~~~~~~~~~gv--~~~~-~~v~~id~-----~~~~V~~~-----~g~~~~yD-----~LviAtG 104 (364)
T TIGR03169 48 ----A-GHYSLDEIRIDLRRLARQAGA--RFVI-AEATGIDP-----DRRKVLLA-----NRPPLSYD-----VLSLDVG 104 (364)
T ss_pred ----h-eeCCHHHhcccHHHHHHhcCC--EEEE-EEEEEEec-----ccCEEEEC-----CCCccccc-----EEEEccC
Confidence 0 011233455455666666665 5554 47888876 22333321 12346799 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc-cc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF-RK 248 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~ 248 (1129)
+.|..|++||..+..+.- .+..++... +. ...+.+... ..
T Consensus 105 --~~~~~~~i~g~~~~~~~~----~~~~~~~~~------------------------------~~---~~~~~~~~~~~~ 145 (364)
T TIGR03169 105 --STTPLSGVEGAADLAVPV----KPIENFLAR------------------------------WE---ALLESADAPPGT 145 (364)
T ss_pred --CCCCCCCCCccccccccc----CCHHHHHHH------------------------------HH---HHHHHHhcCCCC
Confidence 888888888732211100 000000000 00 000001000 12
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhccc----c--cEEEEccccCCcccccCC--------------CCeEEcCC
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTE----A--TTVFLSHHSEHVKKLRFP--------------NNVVKKPD 308 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~----~--~~V~lv~r~~~~~~~~~~--------------~~i~~~~~ 308 (1129)
++++| ||+|++|+|+|..|+.. + .+|+++ +.+.+++...+ -++..+..
T Consensus 146 ~~vvV-----------vG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~ 213 (364)
T TIGR03169 146 KRLAV-----------VGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAP 213 (364)
T ss_pred ceEEE-----------ECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCe
Confidence 33433 89999999999999753 3 589999 54444332111 14556778
Q ss_pred ceEEcCCceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc---cc---
Q psy12350 309 IAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY---PF--- 382 (1129)
Q Consensus 309 v~~~~~~~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~---~~--- 382 (1129)
|+++++++|.+++|+++++|.||+|+|.+++ +++.. .++..+++..+.....+-..++|++|++|..... |.
T Consensus 214 v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~l~~-~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~ 291 (364)
T TIGR03169 214 VTRGPDGALILADGRTLPADAILWATGARAP-PWLAE-SGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKA 291 (364)
T ss_pred eEEEcCCeEEeCCCCEEecCEEEEccCCChh-hHHHH-cCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCc
Confidence 8899877899999999999999999999987 45542 2344444333333333322478999999977532 11
Q ss_pred -cccccceeeehhhcccccccc
Q psy12350 383 -LHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 383 -~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
..+.+||+.+|+++.+.+.|.
T Consensus 292 ~~~A~~~g~~~a~ni~~~l~g~ 313 (364)
T TIGR03169 292 GVYAVRQAPILAANLRASLRGQ 313 (364)
T ss_pred hHHHHHhHHHHHHHHHHHhcCC
Confidence 123488899999998877665
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-18 Score=196.44 Aligned_cols=267 Identities=16% Similarity=0.147 Sum_probs=168.0
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC----CCCCCCCCCCCccccccCcccc-----ccc---
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT----EHIGCDQYGLPVHSSMYKSLKT-----NLP--- 808 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~----~~~g~~~~g~p~~~~~y~~~~~-----~~~--- 808 (1129)
+++|||+|++|+++|..|.+.| ++|+|||+++ .||.|... .+|+... .++.. .....+.. ...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~-~gg~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~gv~~~~ 76 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARAN--LKTLIIEGME-PGGQLTTTTEVENYPGFPE-GISGP-ELMEKMKEQAVKFGAEIIY 76 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--CCEEEEeccC-CCcceeecccccccCCCCC-CCChH-HHHHHHHHHHHHcCCeEEE
Confidence 5789999999999999999999 9999999876 78877632 1233210 00000 00000000 000
Q ss_pred ccccccc--C--CCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHH
Q psy12350 809 KDLMELC--G--YGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDI 884 (1129)
Q Consensus 809 ~~~~~~~--~--~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~ei 884 (1129)
....... + +.........+.....++.+|+.|+.|.+||.+.|.+..+|...+.+...+++|+|+|||+|.+|+|+
T Consensus 77 ~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~ 156 (300)
T TIGR01292 77 EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEE 156 (300)
T ss_pred EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHH
Confidence 0000000 0 00000001112223334449999999999998877777777665555556789999999999999999
Q ss_pred HHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc----EEec---CC
Q psy12350 885 TLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG----VRFQ---DG 955 (1129)
Q Consensus 885 A~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~----V~~~---dG 955 (1129)
|..|++.+++|+++.+.+... ..+.+. ..+.. ..+|++..+ +.++++++ +++. +|
T Consensus 157 a~~l~~~~~~V~~v~~~~~~~-~~~~~~-------------~~l~~--~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g 220 (300)
T TIGR01292 157 ALYLTRIAKKVTLVHRRDKFR-AEKILL-------------DRLRK--NPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTG 220 (300)
T ss_pred HHHHHhhcCEEEEEEeCcccC-cCHHHH-------------HHHHh--CCCeEEEeccEEEEEEccCcEEEEEEEecCCC
Confidence 999999999999998754221 011000 01110 115666543 77776543 4443 24
Q ss_pred --cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccc--cchhHHHHHHHHHHHHHHc
Q psy12350 956 --SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH--TLLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 956 --~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa~~~a~~l~ 1031 (1129)
.++++|.||+|||++++.+++... +.++.++...+... +.+++||||++|++.. ......+..|++.+|..+.
T Consensus 221 ~~~~i~~D~vi~a~G~~~~~~~l~~~--~~~~~~g~i~v~~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 221 EEEELKVDGVFIAIGHEPNTELLKGL--LELDEGGYIVTDEG-MRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAE 297 (300)
T ss_pred ceEEEEccEEEEeeCCCCChHHHHHh--heecCCCcEEECCC-CccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHH
Confidence 468999999999999998777653 44444333344444 4568999999999886 3456788899999988764
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >KOG1335|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=181.02 Aligned_cols=292 Identities=14% Similarity=0.174 Sum_probs=174.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCC-CCccCcccccccccCCccccccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYG-LPVHSSMYKSLKTNLPKEIMELSG 86 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~-~~~~~~~y~~l~~~~~~~~~~~~d 86 (1129)
..+||+|||+||+|..||..+++ .|++.+++|++..+||+|. +.||.+.. +...|.+|.-++.. .++-
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQ--lGlkTacvEkr~~LGGTcL---nvGcIPSKALL~nSh~yh~~q~~----~~~~-- 106 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQ--LGLKTACVEKRGTLGGTCL---NVGCIPSKALLNNSHLYHEAQHE----DFAS-- 106 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHH--hcceeEEEeccCccCceee---eccccccHHHhhhhHHHHHHhhh----HHHh--
Confidence 35899999999999999999999 7799999999999999999 46663211 12233344432221 1111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcC--CcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADNFN--LRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFL 164 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~--~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 164 (1129)
+... ..+.-...+.+.+....-++.+. +. +..-..+|+.+...+...+..++.+...+ ++.....-. .+
T Consensus 107 rGi~--vs~~~~dl~~~~~~k~~~vk~Lt~gi~-~lfkknkV~~~kG~gsf~~p~~V~v~k~d-g~~~ii~aK-----nI 177 (506)
T KOG1335|consen 107 RGID--VSSVSLDLQAMMKAKDNAVKQLTGGIE-NLFKKNKVTYVKGFGSFLDPNKVSVKKID-GEDQIIKAK-----NI 177 (506)
T ss_pred cCcc--ccceecCHHHHHHHHHHHHHHHhhHHH-HHhhhcCeEEEeeeEeecCCceEEEeccC-CCceEEeee-----eE
Confidence 1000 01123355666666666565552 21 11223456666555555566667665432 223333333 89
Q ss_pred EEecccCC-CCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccc
Q psy12350 165 QLMQGHVT-LPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDF 243 (1129)
Q Consensus 165 vvAtG~~~-~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 243 (1129)
||||| + .+..|.|.-+.... .++...+
T Consensus 178 iiATG--SeV~~~PGI~IDekkI--------------------------------------------------VSStgAL 205 (506)
T KOG1335|consen 178 IIATG--SEVTPFPGITIDEKKI--------------------------------------------------VSSTGAL 205 (506)
T ss_pred EEEeC--CccCCCCCeEecCceE--------------------------------------------------EecCCcc
Confidence 99999 4 33334332111111 1222222
Q ss_pred ccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCc
Q psy12350 244 TEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDI 309 (1129)
Q Consensus 244 ~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v 309 (1129)
....-++.++ | +|+|++|+|++..+.++|.+||+++--+.+.+..+.+ ++.+.+.+
T Consensus 206 sL~~vPk~~~------v----iG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv 275 (506)
T KOG1335|consen 206 SLKEVPKKLT------V----IGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKV 275 (506)
T ss_pred chhhCcceEE------E----EcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEE
Confidence 2112222222 3 8999999999999999999999999888776654433 45667777
Q ss_pred eEEcC--Cc---eEEcC---CC--EeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 310 AELTP--TG---VRFQD---GS--YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 310 ~~~~~--~~---v~~~d---g~--~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
...+. ++ |.+.+ |+ ++++|++++|+|-+|-..-|. +..++..|....++...+ |....|+++.+|..-
T Consensus 276 ~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~-f~t~vP~i~~IGDv~ 354 (506)
T KOG1335|consen 276 TSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTR-FQTKVPHIYAIGDVT 354 (506)
T ss_pred EEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceecccc-ccccCCceEEecccC
Confidence 77653 32 44433 33 569999999999886555443 224455555444443332 346789999999886
Q ss_pred cccc
Q psy12350 379 RYPF 382 (1129)
Q Consensus 379 ~~~~ 382 (1129)
.-|+
T Consensus 355 ~gpM 358 (506)
T KOG1335|consen 355 LGPM 358 (506)
T ss_pred Ccch
Confidence 6665
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-19 Score=213.28 Aligned_cols=267 Identities=16% Similarity=0.222 Sum_probs=168.7
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcc---------cCCcCcccccCCCCCCCCCCCCccccccCccc------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQ---------ADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLK------ 804 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~---------~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~------ 804 (1129)
.+++|||+|++|+.+|+.+.+.| .+|+|+|+ ...+||+|.+ .|| +|.+...+....
T Consensus 80 yDvvVIG~GpaG~~aA~~aa~~G--~~V~liE~~~~~~~~~~~~~~GGtC~n---~GC----iPsK~l~~aa~~~~~~~~ 150 (558)
T PLN02546 80 FDLFTIGAGSGGVRASRFASNFG--ASAAVCELPFATISSDTLGGVGGTCVL---RGC----VPKKLLVYASKYSHEFEE 150 (558)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccccccccccCCCccCcccC---cch----HHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999 99999996 2568999984 466 232111100000
Q ss_pred -------------cccc-------cccccc----------cCCCCC--------CC----CCCCCCChhhhhhccCCCCC
Q psy12350 805 -------------TNLP-------KDLMEL----------CGYGHK--------GN----ADKSYIGAKDVLENYNHPIY 842 (1129)
Q Consensus 805 -------------~~~~-------~~~~~~----------~~~~~~--------~~----~~~~~~~~~~v~~~~~~P~~ 842 (1129)
.+.. .....+ ....+- .. ....+....-++++|+.|..
T Consensus 151 ~~~~g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~G~~~~~D~LVIATGs~p~~ 230 (558)
T PLN02546 151 SRGFGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGGRPFI 230 (558)
T ss_pred hhhcCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEECCEEEECCEEEEeCCCCCCC
Confidence 0000 000000 000000 00 00011122223339999999
Q ss_pred CCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEe
Q psy12350 843 PEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLS 921 (1129)
Q Consensus 843 P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~ 921 (1129)
|++||.+. ++++.+..+.. ..+|+|+|||+|.+|+|+|..|++.+.+|+++++.+..++. .+.......+.+
T Consensus 231 P~IpG~~~----v~~~~~~l~~~-~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L-- 303 (558)
T PLN02546 231 PDIPGIEH----AIDSDAALDLP-SKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQM-- 303 (558)
T ss_pred CCCCChhh----ccCHHHHHhcc-ccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHH--
Confidence 99999753 34443333222 35799999999999999999999999999999886654332 222221111111
Q ss_pred cCCccccccCCCCCeEEcCC--eeEEeC--Cc---EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccc
Q psy12350 922 HHSERVTSLCLPNNVVLKPD--VAELTP--TG---VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLY 993 (1129)
Q Consensus 922 ~~~~~~~~~~~~~~V~~~~~--i~~v~~--~~---V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly 993 (1129)
. ..+|+++.+ +.++.+ ++ +.+.+++.+.+|.||+|+|++|+..+|. +..|+++++++...+.
T Consensus 304 -------~---~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD 373 (558)
T PLN02546 304 -------S---LRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVD 373 (558)
T ss_pred -------H---HCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeEC
Confidence 0 125666544 666642 22 3344555456899999999999988753 4477887765533333
Q ss_pred cceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 994 KHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 994 ~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.+ +.++.||||++||+... ...+.+..|++.+|+.+.|.
T Consensus 374 ~~-l~Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~ 413 (558)
T PLN02546 374 EY-SRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGN 413 (558)
T ss_pred CC-ceeCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 33 24589999999999765 45689999999999999874
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=205.86 Aligned_cols=265 Identities=21% Similarity=0.263 Sum_probs=165.8
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEccc-----C---CcCcccccCCCCCCCCCCCCccccccC-----c-----
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQA-----D---NIGGTWLYTEHIGCDQYGLPVHSSMYK-----S----- 802 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~-----~---~~GG~w~~~~~~g~~~~g~p~~~~~y~-----~----- 802 (1129)
+++|||+|++|+.+|..+.+.| .+|+++|+. . .+||+|.. .|| +|.+..... .
T Consensus 4 DvvVIG~G~aG~~aA~~aa~~G--~~v~lie~~~~~~~~~~~~~GGtc~n---~GC----iPsK~l~~~a~~~~~~~~~~ 74 (484)
T TIGR01438 4 DLIVIGGGSGGLAAAKEAADYG--AKVMLLDFVTPTPLGTRWGIGGTCVN---VGC----IPKKLMHQAALLGQALKDSR 74 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCCCcceeccccccc---cCc----CchhHHHHHHHHHHHHhhhh
Confidence 7899999999999999999999 999999973 1 58999984 355 221110000 0
Q ss_pred ---cc------cccc--------------ccc-cccc--CCC-------CCCC---------C-CCCCCChhhhhhccCC
Q psy12350 803 ---LK------TNLP--------------KDL-MELC--GYG-------HKGN---------A-DKSYIGAKDVLENYNH 839 (1129)
Q Consensus 803 ---~~------~~~~--------------~~~-~~~~--~~~-------~~~~---------~-~~~~~~~~~v~~~~~~ 839 (1129)
+. .+.. ... ..+. ... +... . ...+....-++++|+.
T Consensus 75 ~~g~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~ 154 (484)
T TIGR01438 75 NYGWNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGER 154 (484)
T ss_pred hcCcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCC
Confidence 00 0000 000 0000 000 0000 0 0011122233349999
Q ss_pred CCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCcc-chhhhhccccEE
Q psy12350 840 PIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD-ITLDIATRASTV 918 (1129)
Q Consensus 840 P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~-~~~~~~~~~~~~ 918 (1129)
|+.|++||.++ ..+++.+..+... ..++|+|||+|.+|+|+|..|++.|.+||++.+. ..++ +.+.+.....+.
T Consensus 155 p~~p~ipG~~~---~~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~~d~~~~~~l~~~ 229 (484)
T TIGR01438 155 PRYPGIPGAKE---LCITSDDLFSLPY-CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDCANKVGEH 229 (484)
T ss_pred CCCCCCCCccc---eeecHHHhhcccc-cCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccccccCHHHHHHHHHH
Confidence 99999999854 2344444433222 3578999999999999999999999999999874 3222 222222222111
Q ss_pred EEecCCccccccCCCCCeEEcCC--eeEEeC--Cc--EEecCCc---EeeccEEEEccCccCcCCCCC-CCCCeeecCC-
Q psy12350 919 FLSHHSERVTSLCLPNNVVLKPD--VAELTP--TG--VRFQDGS---YEQVDIILCCTGYSNHYPFLH-ESCGIKVVNK- 987 (1129)
Q Consensus 919 ~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~~--V~~~dG~---~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~- 987 (1129)
+. ..+|+++.+ +.+++. +. |++.+|+ ++++|.||+|+|++|+..+|. +..|+++++.
T Consensus 230 L~------------~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~ 297 (484)
T TIGR01438 230 ME------------EHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKT 297 (484)
T ss_pred HH------------HcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcC
Confidence 11 125666554 555542 22 5566663 689999999999999988764 4577887643
Q ss_pred cccccccceeecCCCCcEEEccccc--cchhHHHHHHHHHHHHHHcC
Q psy12350 988 NVQPLYKHTINIEHPTMFILGVPRH--TLLFNLFDLQVRLFQQLMQG 1032 (1129)
Q Consensus 988 ~~~~ly~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa~~~a~~l~g 1032 (1129)
+...+. ..+.++.|+||++|++.. ....+.+..||+.+++.+.|
T Consensus 298 G~I~Vd-~~~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 298 GKIPAD-EEEQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred CeEecC-CCcccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhc
Confidence 322222 234468999999999874 23568899999999999876
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-18 Score=205.29 Aligned_cols=270 Identities=17% Similarity=0.224 Sum_probs=171.9
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCC-cCcccccCCCCCCCCCCCCccccc--------cCccccc----
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADN-IGGTWLYTEHIGCDQYGLPVHSSM--------YKSLKTN---- 806 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~-~GG~w~~~~~~g~~~~g~p~~~~~--------y~~~~~~---- 806 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+||++. +||+|.. .||- |.+..+ |..+...
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~g--~~V~liE~~~~~~GG~c~~---~gci----P~k~~~~~~~~~~~~~~~~~~~~~~ 74 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASAG--KKVALVEESKAMYGGTCIN---IGCI----PTKTLLVAAEKNLSFEQVMATKNTV 74 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhCC--CEEEEEecCCcccceeeec---Cccc----cchHhhhhhhcCCCHHHHHHHHHHH
Confidence 57899999999999999999999 99999999865 6999863 3442 211100 0000000
Q ss_pred ---c---ccccccccCCC---------------CCC-CCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCC
Q psy12350 807 ---L---PKDLMELCGYG---------------HKG-NADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTP 864 (1129)
Q Consensus 807 ---~---~~~~~~~~~~~---------------~~~-~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~ 864 (1129)
. ......-.... ... +....+....-++++|+.|+.|++||.+++. .++++.++...
T Consensus 75 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~-~v~~~~~~~~~ 153 (438)
T PRK07251 75 TSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSK-HVYDSTGIQSL 153 (438)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCC-cEEchHHHhcc
Confidence 0 00000000000 000 0001122233444599999999999986543 35565555443
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCCCCeEEcCC--
Q psy12350 865 EPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD-- 941 (1129)
Q Consensus 865 ~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-- 941 (1129)
.. .+|+|+|||+|.+|+|+|..+++.|.+|+++++.+..++. .+.+.....+ .+. ..+|++..+
T Consensus 154 ~~-~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~---------~l~---~~GI~i~~~~~ 220 (438)
T PRK07251 154 ET-LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQ---------YME---EDGITFLLNAH 220 (438)
T ss_pred hh-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHH---------HHH---HcCCEEEcCCE
Confidence 32 4789999999999999999999999999999987665432 2222211111 011 125666543
Q ss_pred eeEEeCC--cE-EecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCCcEEEcccccc-chh
Q psy12350 942 VAELTPT--GV-RFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-LLF 1016 (1129)
Q Consensus 942 i~~v~~~--~V-~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~ 1016 (1129)
+.+++.+ .+ ...+|+++++|.||+|||++|+.+.+. +..++.+++++...+..+ +.++.||||++|++... ...
T Consensus 221 V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~-~~t~~~~IyaiGD~~~~~~~~ 299 (438)
T PRK07251 221 TTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDY-CQTSVPGVFAVGDVNGGPQFT 299 (438)
T ss_pred EEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCC-cccCCCCEEEeeecCCCcccH
Confidence 7777543 33 334677899999999999999987654 224566655543334333 34589999999998765 345
Q ss_pred HHHHHHHHHHHHHHcCC
Q psy12350 1017 NLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1017 ~~~e~qa~~~a~~l~g~ 1033 (1129)
+.+..|++.++..+.|.
T Consensus 300 ~~a~~~~~~~~~~~~~~ 316 (438)
T PRK07251 300 YISLDDFRIVFGYLTGD 316 (438)
T ss_pred hHHHHHHHHHHHHHcCC
Confidence 77888899988888764
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-18 Score=206.64 Aligned_cols=271 Identities=18% Similarity=0.232 Sum_probs=167.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccC--------CcCcccccCCCCCCCC--------------------C
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD--------NIGGTWLYTEHIGCDQ--------------------Y 791 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~--------~~GG~w~~~~~~g~~~--------------------~ 791 (1129)
.+++|||+||+|+.+|..+.+.| .+|+|+|+.. .+||+|.. .||-+ +
T Consensus 6 yDviVIG~GpaG~~AA~~aa~~G--~~V~lie~~~~~~~~~~~~~GG~C~n---~gciPsK~l~~~a~~~~~~~~~~~~~ 80 (499)
T PTZ00052 6 YDLVVIGGGSGGMAAAKEAAAHG--KKVALFDYVKPSTQGTKWGLGGTCVN---VGCVPKKLMHYAANIGSIFHHDSQMY 80 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHhCC--CeEEEEeccCCCCccccccccceecc---ccccchHHHHHHHHHHHHHHhHHhcC
Confidence 48899999999999999999999 9999999732 48999863 34421 0
Q ss_pred CCCcc-ccccCccccccccccccc----------cCC-------CCCCC---------CCCCCCChhhhhhccCCCCCCC
Q psy12350 792 GLPVH-SSMYKSLKTNLPKDLMEL----------CGY-------GHKGN---------ADKSYIGAKDVLENYNHPIYPE 844 (1129)
Q Consensus 792 g~p~~-~~~y~~~~~~~~~~~~~~----------~~~-------~~~~~---------~~~~~~~~~~v~~~~~~P~~P~ 844 (1129)
|+... ...+..+..........+ ... .+... ....+....-++++|+.|..|.
T Consensus 81 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~ 160 (499)
T PTZ00052 81 GWKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPE 160 (499)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCC
Confidence 11000 000000000000000000 000 00000 0001222333445999999985
Q ss_pred -CCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecC
Q psy12350 845 -FKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHH 923 (1129)
Q Consensus 845 -i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1129)
+||.+.+ .+.+.+...... .+++|+|||+|.+|+|+|..|++.|.+||++.+......+.+.......+.
T Consensus 161 ~i~G~~~~---~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~----- 231 (499)
T PTZ00052 161 DVPGAKEY---SITSDDIFSLSK-DPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEY----- 231 (499)
T ss_pred CCCCccce---eecHHHHhhhhc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHH-----
Confidence 9997642 334443332222 368999999999999999999999999999976422111222222111111
Q ss_pred CccccccCCCCCeEEcCC--eeEEeC--C--cEEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccce
Q psy12350 924 SERVTSLCLPNNVVLKPD--VAELTP--T--GVRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHT 996 (1129)
Q Consensus 924 ~~~~~~~~~~~~V~~~~~--i~~v~~--~--~V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~ 996 (1129)
+. ..+|++..+ +.+++. + .+.+.+|+++++|.||+|+|++|+..+|. +.+|+++++++.......
T Consensus 232 ----l~---~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~- 303 (499)
T PTZ00052 232 ----MK---EQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND- 303 (499)
T ss_pred ----HH---HcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-
Confidence 10 125666554 555543 2 26677899999999999999999998875 457888876553222222
Q ss_pred eecCCCCcEEEcccccc--chhHHHHHHHHHHHHHHcCC
Q psy12350 997 INIEHPTMFILGVPRHT--LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 997 ~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 304 -~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~ 341 (499)
T PTZ00052 304 -CTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQ 341 (499)
T ss_pred -cCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 5689999999998742 45689999999999999864
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-18 Score=205.80 Aligned_cols=267 Identities=16% Similarity=0.243 Sum_probs=170.6
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccc-----cCcc------------
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSM-----YKSL------------ 803 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~-----y~~~------------ 803 (1129)
+++|||+||+|+.+|..+.+.| .+|+|+|+.. +||+|.. .|| +|.+... +...
T Consensus 2 DvvVIGaGpaG~~aA~~aa~~g--~~v~lie~~~-~GG~c~n---~gc----iPsk~l~~~~~~~~~~~~~~~g~~~~~~ 71 (463)
T TIGR02053 2 DLVIIGSGAAAFAAAIKAAELG--ASVAMVERGP-LGGTCVN---VGC----VPSKMLLRAAEVAHYARKPPFGGLAATV 71 (463)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCc-ccCCeee---ecE----EccHHHHHHHHHHHHhhccCcccccCCC
Confidence 6789999999999999999999 9999999865 9999973 354 2211100 0000
Q ss_pred ccccc----------cccc------ccc--CCCC-------CCC------CCC-CCCChhhhhhccCCCCCCCCCCCCCC
Q psy12350 804 KTNLP----------KDLM------ELC--GYGH-------KGN------ADK-SYIGAKDVLENYNHPIYPEFKGKDMC 851 (1129)
Q Consensus 804 ~~~~~----------~~~~------~~~--~~~~-------~~~------~~~-~~~~~~~v~~~~~~P~~P~i~G~~~f 851 (1129)
..+.. +.+. .+. +..+ ... ... .+....-++.+|+.|+.|++||.+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~ 151 (463)
T TIGR02053 72 AVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEA 151 (463)
T ss_pred ccCHHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccC
Confidence 00000 0000 000 0000 000 000 01112234449999999999998764
Q ss_pred CCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCcccccc
Q psy12350 852 QIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSL 930 (1129)
Q Consensus 852 ~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 930 (1129)
.++++.+..+... .+++|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+. +.
T Consensus 152 --~~~~~~~~~~~~~-~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~---------l~- 218 (463)
T TIGR02053 152 --GYLTSEEALALDR-IPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEA---------LA- 218 (463)
T ss_pred --ceECchhhhCccc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHH---------HH-
Confidence 3566655544332 3689999999999999999999999999999987655432 12221111111 10
Q ss_pred CCCCCeEEcCC--eeEEeCC--c--EEec---CCcEeeccEEEEccCccCcCCCC-CCCCCeeecCCcccccccceeecC
Q psy12350 931 CLPNNVVLKPD--VAELTPT--G--VRFQ---DGSYEQVDIILCCTGYSNHYPFL-HESCGIKVVNKNVQPLYKHTINIE 1000 (1129)
Q Consensus 931 ~~~~~V~~~~~--i~~v~~~--~--V~~~---dG~~~~~D~VI~aTG~~~~~~fl-~~~~g~~~~~~~~~~ly~~~~~~~ 1000 (1129)
..+|++..+ |.+++.+ . +++. +++++++|.||+|+|++|+.+.| -+..++++++++...+..+ +.++
T Consensus 219 --~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~Ts 295 (463)
T TIGR02053 219 --EEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDET-LRTS 295 (463)
T ss_pred --HcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCC-ccCC
Confidence 125666554 7777543 2 3443 23578999999999999998744 2346777776554334333 3468
Q ss_pred CCCcEEEccccccc-hhHHHHHHHHHHHHHHcCC
Q psy12350 1001 HPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1001 ~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.||||++|++.... ..+.+..||+.+|..+.+.
T Consensus 296 ~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 296 NPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred CCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence 99999999987653 4589999999999999875
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >KOG1336|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.3e-19 Score=191.88 Aligned_cols=280 Identities=15% Similarity=0.197 Sum_probs=190.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+.|+|||+|++|..|+.++++.++-.+++++-+...+ .|+ +..+|+......
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~----------------------pyd--r~~Ls~~~~~~~--- 126 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL----------------------PYD--RARLSKFLLTVG--- 126 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC----------------------ccc--chhcccceeecc---
Confidence 57999999999999999999998887788888764421 122 233333332211
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
+++.....++.+..++ ...+++.|+.++- ..++ +..+.++...|+ +|+|||
T Consensus 127 ------------~~~a~r~~e~Yke~gI--e~~~~t~v~~~D~-----~~K~-----l~~~~Ge~~kys-----~LilAT 177 (478)
T KOG1336|consen 127 ------------EGLAKRTPEFYKEKGI--ELILGTSVVKADL-----ASKT-----LVLGNGETLKYS-----KLIIAT 177 (478)
T ss_pred ------------ccccccChhhHhhcCc--eEEEcceeEEeec-----cccE-----EEeCCCceeecc-----eEEEee
Confidence 1122222345667776 7889999998874 2222 234445677899 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|+.|++||....++ ..++.....+ ....... ..
T Consensus 178 G--s~~~~l~~pG~~~~nv------------~~ireieda~----------------------------~l~~~~~--~~ 213 (478)
T KOG1336|consen 178 G--SSAKTLDIPGVELKNV------------FYLREIEDAN----------------------------RLVAAIQ--LG 213 (478)
T ss_pred c--CccccCCCCCccccce------------eeeccHHHHH----------------------------HHHHHhc--cC
Confidence 9 7899999988432211 0111100000 0000110 12
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC---------------CeEEcCCceEEc
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------------NVVKKPDIAELT 313 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------------~i~~~~~v~~~~ 313 (1129)
.++++ +|+|++|+|+|..|...+++||++++.+.+++..+.. ++.+.+.+.+++
T Consensus 214 ~~vV~-----------vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~ 282 (478)
T KOG1336|consen 214 GKVVC-----------VGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLE 282 (478)
T ss_pred ceEEE-----------ECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecc
Confidence 33333 8999999999999999999999999998877643321 466788888887
Q ss_pred CCc------eEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccccccccc
Q psy12350 314 PTG------VRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYPFLHESC 387 (1129)
Q Consensus 314 ~~~------v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~~~~~~~ 387 (1129)
++. |.+.||+++++|.||+++|-+++.+|++. +...+....++.+...- ++.|++|.+|...++|+-...-
T Consensus 283 ~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~--g~~~~~~G~i~V~~~f~-t~~~~VyAiGDva~fp~~~~~~ 359 (478)
T KOG1336|consen 283 GNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEK--GILLDSKGGIKVDEFFQ-TSVPNVYAIGDVATFPLKGYGE 359 (478)
T ss_pred cCCCCcEEEEEeccCCEeccCeEEEeeccccccccccc--cceecccCCEeehhcee-eccCCcccccceeecccccccc
Confidence 542 78899999999999999999999999984 45566666666655433 6699999999999888866445
Q ss_pred ceeeehhhcccccccc
Q psy12350 388 GIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 388 ~~~~~a~~~~~~~~~~ 403 (1129)
..+ +-++-.++++++
T Consensus 360 ~~~-v~H~~~A~~~g~ 374 (478)
T KOG1336|consen 360 DRR-VEHVDHARASGR 374 (478)
T ss_pred ccc-chHHHHHHHHHH
Confidence 544 555555555555
|
|
| >KOG0404|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-18 Score=167.16 Aligned_cols=264 Identities=15% Similarity=0.237 Sum_probs=169.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc----CCcCceEecCCCCCCCCCCCCccCcccccccccCCccccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT----DNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIME 83 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~----~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~ 83 (1129)
...+|+|||+|||+.+||.++++ .+.+.+|||-- ..+||+..- ..++-.
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaar--aelkPllfEG~~~~~i~pGGQLtT-------------------------TT~veN 59 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAAR--AELKPLLFEGMMANGIAPGGQLTT-------------------------TTDVEN 59 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhh--cccCceEEeeeeccCcCCCceeee-------------------------eecccc
Confidence 34599999999999999999999 77899999952 224566552 123445
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeE
Q psy12350 84 LSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163 (1129)
Q Consensus 84 ~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 163 (1129)
|++||- =....++.+.+++.+.+||. .|... .|.+++. ...-+.+.+ +......| .
T Consensus 60 fPGFPd-------gi~G~~l~d~mrkqs~r~Gt--~i~tE-tVskv~~-----sskpF~l~t----d~~~v~~~-----a 115 (322)
T KOG0404|consen 60 FPGFPD-------GITGPELMDKMRKQSERFGT--EIITE-TVSKVDL-----SSKPFKLWT----DARPVTAD-----A 115 (322)
T ss_pred CCCCCc-------ccccHHHHHHHHHHHHhhcc--eeeee-ehhhccc-----cCCCeEEEe----cCCceeee-----e
Confidence 666542 24667899999999999987 44433 3555543 222222222 11234567 9
Q ss_pred EEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccc
Q psy12350 164 LQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDF 243 (1129)
Q Consensus 164 lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 243 (1129)
||+||| ...+...+||..+..|..+ +-++ |. -+....
T Consensus 116 vI~atG--AsAkRl~~pg~ge~~fWqr-----GiSa---------------CA---------------------VCDGaa 152 (322)
T KOG0404|consen 116 VILATG--ASAKRLHLPGEGEGEFWQR-----GISA---------------CA---------------------VCDGAA 152 (322)
T ss_pred EEEecc--cceeeeecCCCCcchHHhc-----ccch---------------hh---------------------cccCcc
Confidence 999999 5566666777533333222 0000 10 112222
Q ss_pred ccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccC-------CCCe--EEcCCceEEcC
Q psy12350 244 TEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRF-------PNNV--VKKPDIAELTP 314 (1129)
Q Consensus 244 ~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~-------~~~i--~~~~~v~~~~~ 314 (1129)
.-+++|-..| ||||.+++|-|..|...+++|++++|++++..... ..+| ..++.+.+.-+
T Consensus 153 pifrnk~laV-----------IGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs~~Mq~ra~~npnI~v~~nt~~~ea~g 221 (322)
T KOG0404|consen 153 PIFRNKPLAV-----------IGGGDSAMEEALFLTKYASKVYIIHRRDHFRASKIMQQRAEKNPNIEVLYNTVAVEALG 221 (322)
T ss_pred hhhcCCeeEE-----------EcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHHHHHHHHHhcCCCeEEEechhhhhhcc
Confidence 2234444444 79999999999999999999999999997644311 1122 22333333333
Q ss_pred Cc-----eEEc---CC--CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 315 TG-----VRFQ---DG--SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 315 ~~-----v~~~---dg--~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
++ +.+. .| +.++++-++++.|-.|+..||+. ++..|.+..+..-...-..+.|++|..|..+
T Consensus 222 d~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g--qve~d~~GYi~t~pgts~TsvpG~FAAGDVq 293 (322)
T KOG0404|consen 222 DGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG--QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQ 293 (322)
T ss_pred CcccccceEEEecccCcccccccceeEEEecCCchhhHhcC--ceeeccCceEEeccCcccccccceeeccccc
Confidence 31 3332 23 45799999999999999999984 4666666554444455567899999999875
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-18 Score=204.28 Aligned_cols=182 Identities=18% Similarity=0.209 Sum_probs=129.3
Q ss_pred hccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhc
Q psy12350 835 ENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIAT 913 (1129)
Q Consensus 835 ~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~ 913 (1129)
++|++|+.|++||.+.. .++++.+..+.. ..+|+|+|||+|.+|+|+|..|++.|.+|+++++++..++. .+....
T Consensus 135 ATGs~p~~p~i~g~~~~--~~~~~~~~~~l~-~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~ 211 (451)
T PRK07846 135 AAGSRPVIPPVIADSGV--RYHTSDTIMRLP-ELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISE 211 (451)
T ss_pred cCCCCCCCCCCCCcCCc--cEEchHHHhhhh-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHH
Confidence 39999999999996531 233333332222 24799999999999999999999999999999987655432 222221
Q ss_pred cccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC--c--EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecC
Q psy12350 914 RASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT--G--VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVN 986 (1129)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~--~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~ 986 (1129)
...+ .+..+|+++.+ +.+++.+ + +.+.+|+++++|.||+|||++|+.+++. +..|+++++
T Consensus 212 ~l~~-------------l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~ 278 (451)
T PRK07846 212 RFTE-------------LASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDE 278 (451)
T ss_pred HHHH-------------HHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECC
Confidence 1111 01124555443 7777543 3 5667898999999999999999998875 447888876
Q ss_pred CcccccccceeecCCCCcEEEccccccc-hhHHHHHHHHHHHHHHcCC
Q psy12350 987 KNVQPLYKHTINIEHPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 987 ~~~~~ly~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~ 1033 (1129)
++...+..+ +.++.||||++|++.... ..+.+..||+.++.++.+.
T Consensus 279 ~G~i~Vd~~-~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 279 DGRVVVDEY-QRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHP 325 (451)
T ss_pred CCcEeECCC-cccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCC
Confidence 654434333 346899999999988653 4589999999999999864
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-18 Score=207.94 Aligned_cols=185 Identities=18% Similarity=0.175 Sum_probs=125.3
Q ss_pred hhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhh
Q psy12350 834 LENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIA 912 (1129)
Q Consensus 834 ~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~ 912 (1129)
+++|+.|.+|++++.+. ..++++.+...... .+++|+|||+|.+|+|+|..+++.|++||++++.+..++. .+...
T Consensus 280 IATGS~P~~P~~~~~~~--~~V~ts~d~~~l~~-lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~d~eis 356 (659)
T PTZ00153 280 IATGSTPNIPDNIEVDQ--KSVFTSDTAVKLEG-LQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADVA 356 (659)
T ss_pred EcCCCCCCCCCCCCCCC--CcEEehHHhhhhhh-cCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccccCCHHHH
Confidence 33999999998776543 24666555443333 3789999999999999999999999999999987765542 22222
Q ss_pred ccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc----EE--ecC-------C--------cEeeccEEEEccCc
Q psy12350 913 TRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG----VR--FQD-------G--------SYEQVDIILCCTGY 969 (1129)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~----V~--~~d-------G--------~~~~~D~VI~aTG~ 969 (1129)
....+.++. ..+|+++.+ |++++++. +. +.+ + +++++|.||+|||+
T Consensus 357 ~~l~~~ll~-----------~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr 425 (659)
T PTZ00153 357 KYFERVFLK-----------SKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGR 425 (659)
T ss_pred HHHHHHHhh-----------cCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECc
Confidence 222221111 125666655 77775422 33 221 1 26899999999999
Q ss_pred cCcCCCCC-CCCCeeecCCccccc--ccceee---cCCCCcEEEccccccc-hhHHHHHHHHHHHHHHcCC
Q psy12350 970 SNHYPFLH-ESCGIKVVNKNVQPL--YKHTIN---IEHPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 970 ~~~~~fl~-~~~g~~~~~~~~~~l--y~~~~~---~~~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+|+..+|. +..++.+++ +...+ |.++.. ...||||++||+.... ..+.+..||+.++++|.|.
T Consensus 426 ~Pnt~~L~l~~~gi~~~~-G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 426 KPNTNNLGLDKLKIQMKR-GFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred ccCCccCCchhcCCcccC-CEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence 99988764 345666654 32333 333321 1269999999997643 4589999999999999885
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-18 Score=193.00 Aligned_cols=272 Identities=13% Similarity=0.169 Sum_probs=166.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC----CCCCCCCCCCCccccccCccccccc---cc-
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT----EHIGCDQYGLPVHSSMYKSLKTNLP---KD- 810 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~----~~~g~~~~g~p~~~~~y~~~~~~~~---~~- 810 (1129)
..+++|||+|++|+++|..|.+.| +++++||+. ..||.+... .+|+..+ +++.. .+.+.+..... .+
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g--~~~~~ie~~-~~gg~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~ 80 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARAN--LQPVLITGM-EKGGQLTTTTEVENWPGDPN-DLTGP-LLMERMHEHATKFETEI 80 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CCeEEEEee-cCCCceecCceECCCCCCCC-CCCHH-HHHHHHHHHHHHCCCEE
Confidence 457899999999999999999999 899999964 688876532 2233211 00000 00000000000 00
Q ss_pred ----ccccc--C--CCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHH
Q psy12350 811 ----LMELC--G--YGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGL 882 (1129)
Q Consensus 811 ----~~~~~--~--~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~ 882 (1129)
..... + +....+ ...+.....++.+|+.|+.|++||.+.|.++.+|++.+.+.....+|+|+|||+|.+|+
T Consensus 81 ~~~~v~~v~~~~~~~~v~~~-~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~ 159 (321)
T PRK10262 81 IFDHINKVDLQNRPFRLTGD-SGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAV 159 (321)
T ss_pred EeeEEEEEEecCCeEEEEec-CCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHH
Confidence 00000 0 000000 01122233445599999999999988888888898888777777899999999999999
Q ss_pred HHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----cEEecCC
Q psy12350 883 DITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----GVRFQDG 955 (1129)
Q Consensus 883 eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~~~dG 955 (1129)
|+|..|++.+++|+++.+.+.. ...+.+.....+. ....+|++..+ +.+++++ +|++.++
T Consensus 160 e~A~~l~~~~~~Vtlv~~~~~~-~~~~~~~~~~~~~------------l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~ 226 (321)
T PRK10262 160 EEALYLSNIASEVHLIHRRDGF-RAEKILIKRLMDK------------VENGNIILHTNRTLEEVTGDQMGVTGVRLRDT 226 (321)
T ss_pred HHHHHHHhhCCEEEEEEECCcc-CCCHHHHHHHHhh------------ccCCCeEEEeCCEEEEEEcCCccEEEEEEEEc
Confidence 9999999999999999885432 1111111111111 11235776654 7888765 3666543
Q ss_pred ------cEeeccEEEEccCccCcCCCCCCCCCeeecCCccccccc----ceeecCCCCcEEEccccccc------hhHHH
Q psy12350 956 ------SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYK----HTINIEHPTMFILGVPRHTL------LFNLF 1019 (1129)
Q Consensus 956 ------~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~----~~~~~~~p~l~~iG~~~~~~------~~~~~ 1019 (1129)
+++++|.||+|+|++|+..++.. ++.+++.++ .... ....++.||||++|++.... .+...
T Consensus 227 ~~~~~~~~i~~D~vv~a~G~~p~~~l~~~--~l~~~~g~i-~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g 303 (321)
T PRK10262 227 QNSDNIESLDVAGLFVAIGHSPNTAIFEG--QLELENGYI-KVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTG 303 (321)
T ss_pred CCCCeEEEEECCEEEEEeCCccChhHhhc--cccccCCEE-EECCCCcccccccCCCCEEECeeccCCCcceEEEEehhH
Confidence 36899999999999999876653 233333222 2211 12467999999999987432 12333
Q ss_pred HHHHHHHHHHHcC
Q psy12350 1020 DLQVRLFQQLMQG 1032 (1129)
Q Consensus 1020 e~qa~~~a~~l~g 1032 (1129)
-..|..+.+++.+
T Consensus 304 ~~Aa~~~~~~l~~ 316 (321)
T PRK10262 304 CMAALDAERYLDG 316 (321)
T ss_pred HHHHHHHHHHHHh
Confidence 3444455555544
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-18 Score=205.63 Aligned_cols=267 Identities=21% Similarity=0.295 Sum_probs=167.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccc-----cCc--------cccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSM-----YKS--------LKTN 806 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~-----y~~--------~~~~ 806 (1129)
.+++|||+||+|+++|..+++.| .+|+|+|+.. +||+|.. .||- |.+... ++. ....
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~G--~~V~liE~~~-~GG~c~~---~gci----P~k~l~~~~~~~~~~~~~~~~g~~~~ 74 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQLG--LKVAIVEKEK-LGGTCLN---RGCI----PSKALLHAAERADEARHSEDFGIKAE 74 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHCC--CcEEEEeccc-cccceee---cccC----CcHHHHHhhhHHHHHHHHHhcCcccC
Confidence 47899999999999999999999 9999999976 9999974 3442 211100 000 0000
Q ss_pred ----cccccccc------------------cCCCC--------CCCC--------CCCCCChhhhhhccCCCCCCCCCCC
Q psy12350 807 ----LPKDLMEL------------------CGYGH--------KGNA--------DKSYIGAKDVLENYNHPIYPEFKGK 848 (1129)
Q Consensus 807 ----~~~~~~~~------------------~~~~~--------~~~~--------~~~~~~~~~v~~~~~~P~~P~i~G~ 848 (1129)
......++ .+..+ .... ...+....-++++|+.|..| ||.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~--pg~ 152 (462)
T PRK06416 75 NVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPREL--PGI 152 (462)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCC--CCC
Confidence 00000000 00000 0000 00111122333499999765 565
Q ss_pred CCCCCc-EEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccch-hhhhccccEEEEecCCcc
Q psy12350 849 DMCQIP-ILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDIT-LDIATRASTVFLSHHSER 926 (1129)
Q Consensus 849 ~~f~g~-~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 926 (1129)
+. .+. ++++.+..... ..+|+|+|||+|.+|+|+|..|++.|.+||++++.+..++.. +.+.....+.
T Consensus 153 ~~-~~~~v~~~~~~~~~~-~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~-------- 222 (462)
T PRK06416 153 EI-DGRVIWTSDEALNLD-EVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERA-------- 222 (462)
T ss_pred CC-CCCeEEcchHhhCcc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHH--------
Confidence 42 343 44444443322 246999999999999999999999999999999876654321 1111111111
Q ss_pred ccccCCCCCeEEcCC--eeEEeCC--c--EEecCC---cEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccce
Q psy12350 927 VTSLCLPNNVVLKPD--VAELTPT--G--VRFQDG---SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHT 996 (1129)
Q Consensus 927 ~~~~~~~~~V~~~~~--i~~v~~~--~--V~~~dG---~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~ 996 (1129)
+. ..+|+++.+ +.+++++ + +.+.+| +++++|.||+|+|++|+..++. +..|+.++ ++...+..+
T Consensus 223 -l~---~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~- 296 (462)
T PRK06416 223 -LK---KRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQ- 296 (462)
T ss_pred -HH---HcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCC-
Confidence 10 125666554 7777643 3 445566 6789999999999999988763 34677776 443333333
Q ss_pred eecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCCC
Q psy12350 997 INIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 997 ~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
+.++.||||++|++... ...+.+..||+.+|..+.|..
T Consensus 297 ~~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~ 335 (462)
T PRK06416 297 LRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGNP 335 (462)
T ss_pred CccCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcCCC
Confidence 34689999999998754 456889999999999998753
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-18 Score=209.20 Aligned_cols=271 Identities=15% Similarity=0.173 Sum_probs=168.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC--------------------CCCCccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ--------------------YGLPVHS-- 797 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~--------------------~g~p~~~-- 797 (1129)
.+++|||+|++|+++|..+.+.| .+|+|+|++ .+||+|.+ .||-+ +|++...
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~G--~~v~lie~~-~~GG~c~n---~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~ 172 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQG--ARVTLIERG-TIGGTCVN---VGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPT 172 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhCC--CeEEEEecC-cceeeccc---cCccccHHHHHHHHHHHHHhcccccCCccCCCCc
Confidence 58899999999999999999999 999999996 89999984 45521 0211000
Q ss_pred cccCccccc----c---cc----c-cccccCCCC--------CCC-------CC--CCCCChhhhhhccCCCCCCCCCCC
Q psy12350 798 SMYKSLKTN----L---PK----D-LMELCGYGH--------KGN-------AD--KSYIGAKDVLENYNHPIYPEFKGK 848 (1129)
Q Consensus 798 ~~y~~~~~~----~---~~----~-~~~~~~~~~--------~~~-------~~--~~~~~~~~v~~~~~~P~~P~i~G~ 848 (1129)
..+..+... . .. . +.......+ ... .. ..+....-|+++|+.|++|++||+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~ 252 (561)
T PRK13748 173 IDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGL 252 (561)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCC
Confidence 000000000 0 00 0 000000000 000 00 012222334449999999999998
Q ss_pred CCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCcccc
Q psy12350 849 DMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVT 928 (1129)
Q Consensus 849 ~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1129)
+.. .++++.+.... ...+|+|+|||+|.+|+|+|..|++.|++|+++.+........+.+.....+. +
T Consensus 253 ~~~--~~~~~~~~~~~-~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~---------l 320 (561)
T PRK13748 253 KET--PYWTSTEALVS-DTIPERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAA---------F 320 (561)
T ss_pred Ccc--ceEccHHHhhc-ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHH---------H
Confidence 752 23333322111 23479999999999999999999999999999987432222222222111111 1
Q ss_pred ccCCCCCeEEcCC--eeEEeC--Cc--EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCC
Q psy12350 929 SLCLPNNVVLKPD--VAELTP--TG--VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEH 1001 (1129)
Q Consensus 929 ~~~~~~~V~~~~~--i~~v~~--~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~ 1001 (1129)
. ..+|++..+ +++++. +. +.+.++ ++++|.||+|+|++|+..+|. +..|+++++++...+..+ +.++.
T Consensus 321 ~---~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~-~~Ts~ 395 (561)
T PRK13748 321 R---AEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQG-MRTSV 395 (561)
T ss_pred H---HCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCC-cccCC
Confidence 0 125666544 777753 22 333444 689999999999999988653 447888876554333333 34589
Q ss_pred CCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1002 PTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1002 p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
||||++|++... ...+.+..|++.++..+.|.
T Consensus 396 ~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 428 (561)
T PRK13748 396 PHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG 428 (561)
T ss_pred CCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 999999999754 45578899999999999764
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-18 Score=218.76 Aligned_cols=285 Identities=14% Similarity=0.157 Sum_probs=168.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+|||||||||+||..|++ .|++|+|||+.+.+||...| .++
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~--~G~~VtV~E~~~~~GG~l~~------------------------------gip--- 474 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVK--YGVDVTVYEALHVVGGVLQY------------------------------GIP--- 474 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCcceeec------------------------------cCC---
Confidence 4799999999999999999999 66999999999999998774 011
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
.+....++.+...+...++|+ .+++|+.|. + .+++.++. ....|| +|||||
T Consensus 475 -------~~rl~~e~~~~~~~~l~~~Gv--~~~~~~~vg---~--------~~~~~~l~----~~~~yD-----aViIAT 525 (1006)
T PRK12775 475 -------SFRLPRDIIDREVQRLVDIGV--KIETNKVIG---K--------TFTVPQLM----NDKGFD-----AVFLGV 525 (1006)
T ss_pred -------ccCCCHHHHHHHHHHHHHCCC--EEEeCCccC---C--------ccCHHHHh----hccCCC-----EEEEec
Confidence 111223556666666677776 778776541 1 11111111 012489 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccc-hhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSE-KYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|. ..|+.++|||.. ..| .++. .|+..+.. .....+. ..
T Consensus 526 Ga-~~pr~l~IpG~~---l~g---------------V~~a~~fL~~~~~---------------------~~~~~~~-~~ 564 (1006)
T PRK12775 526 GA-GAPTFLGIPGEF---AGQ---------------VYSANEFLTRVNL---------------------MGGDKFP-FL 564 (1006)
T ss_pred CC-CCCCCCCCCCcC---CCC---------------cEEHHHHHHHHHh---------------------cCccccc-cc
Confidence 93 257888888732 111 1111 12111100 0000000 00
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhccccc-EEEEccccCCcccccC--------CC--CeEEcCCceEEc--C
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEAT-TVFLSHHSEHVKKLRF--------PN--NVVKKPDIAELT--P 314 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~-~V~lv~r~~~~~~~~~--------~~--~i~~~~~v~~~~--~ 314 (1129)
.. .+..||+|+| ||||++|+|+|..+.+.|. .|++++|+........ .+ ++.....+.++. +
T Consensus 565 ~~-~~~~Gk~VvV----IGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~~~a~eeGI~~~~~~~p~~i~~~~ 639 (1006)
T PRK12775 565 DT-PISLGKSVVV----IGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHAKEEGIDFFFLHSPVEIYVDA 639 (1006)
T ss_pred cC-CccCCCEEEE----ECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecCCcEEEEeCC
Confidence 00 0112455555 8999999999999888875 6899887643211100 11 344455566663 2
Q ss_pred Cc----eEEc-----------------CCC--EeecCEEEEcccccccCCCCCCCCCeEeecCccccccc----ccccCC
Q psy12350 315 TG----VRFQ-----------------DGS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYK----HLINIE 367 (1129)
Q Consensus 315 ~~----v~~~-----------------dg~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~----~~~~~~ 367 (1129)
++ |.+. +|+ ++++|.||+|+|++++..++....++.++.+..+...+ ..+.++
T Consensus 640 ~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts 719 (1006)
T PRK12775 640 EGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTN 719 (1006)
T ss_pred CCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCC
Confidence 22 3331 222 47999999999999998776533344444333222222 233468
Q ss_pred CCCeEEeccccccc--ccccccceeeehhhcccccccc
Q psy12350 368 HPSMCIIGYTYRYP--FLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 368 ~p~l~~~G~~~~~~--~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
.|++|.+|.....| ...+..+++.+|..+...+.+.
T Consensus 720 ~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~~~ 757 (1006)
T PRK12775 720 LPGVFAGGDIVTGGATVILAMGAGRRAARSIATYLRLG 757 (1006)
T ss_pred CCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999985432 2334488888888877666554
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-18 Score=202.19 Aligned_cols=268 Identities=20% Similarity=0.269 Sum_probs=168.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcccc-----ccCccc--------c-
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSS-----MYKSLK--------T- 805 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~-----~y~~~~--------~- 805 (1129)
.+++|||+||+|+.+|..+.+.| .+|+|+|+++.+||+|.. .|| +|.+.. .|+.+. .
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~G--~~V~liE~~~~~GG~c~~---~gc----iPsK~l~~~~~~~~~~~~~~~~~~gi~ 74 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQLG--LKVACVEGRSTLGGTCLN---VGC----MPSKALLHASELYEAASGGEFAHLGIE 74 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCceeeeecc---Ccc----cccHHHHHHhHHHHHHhhhhhhhcCcc
Confidence 47899999999999999999999 999999987889999874 354 222110 011000 0
Q ss_pred -----cccc--------------c---cccccCC-------CCCCC--------CC--CCCCChhhhhhccCCCCCCCCC
Q psy12350 806 -----NLPK--------------D---LMELCGY-------GHKGN--------AD--KSYIGAKDVLENYNHPIYPEFK 846 (1129)
Q Consensus 806 -----~~~~--------------~---~~~~~~~-------~~~~~--------~~--~~~~~~~~v~~~~~~P~~P~i~ 846 (1129)
+..+ . ..+-... .+... .. ..+....-++.+|++|. ++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~--~ip 152 (466)
T PRK06115 75 VKPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPT--PLP 152 (466)
T ss_pred ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCC--CCC
Confidence 0000 0 0000000 00000 00 01122233445999885 467
Q ss_pred CCCCCCC-cEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCC
Q psy12350 847 GKDMCQI-PILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHS 924 (1129)
Q Consensus 847 G~~~f~g-~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~ 924 (1129)
|.+. .+ .++++.+..... ..+|+|+|||+|.+|+|+|..+++.|++||++++.+..++. .+.......+.
T Consensus 153 g~~~-~~~~~~~~~~~~~~~-~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~------ 224 (466)
T PRK06115 153 GVTI-DNQRIIDSTGALSLP-EVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKA------ 224 (466)
T ss_pred CCCC-CCCeEECHHHHhCCc-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHH------
Confidence 7642 33 355555444332 24799999999999999999999999999999987655432 11111111111
Q ss_pred ccccccCCCCCeEEcCC--eeEEeC--CcE--Eec---CC--cEeeccEEEEccCccCcCCCCC-CCCCeeecCCccccc
Q psy12350 925 ERVTSLCLPNNVVLKPD--VAELTP--TGV--RFQ---DG--SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPL 992 (1129)
Q Consensus 925 ~~~~~~~~~~~V~~~~~--i~~v~~--~~V--~~~---dG--~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~l 992 (1129)
+. ..+|+++.+ +.++++ +++ .+. +| +++++|.||+|+|++|+...|. +..|+.+++++.. .
T Consensus 225 ---l~---~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~-v 297 (466)
T PRK06115 225 ---LT---KQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGML-A 297 (466)
T ss_pred ---HH---hcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEE-E
Confidence 11 125666544 777764 233 332 23 4689999999999999988664 3457777655432 2
Q ss_pred ccceeecCCCCcEEEccccccc-hhHHHHHHHHHHHHHHcCCC
Q psy12350 993 YKHTINIEHPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 993 y~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
.. ...++.||||++|++.... ..+.+..||+.+++.+.|..
T Consensus 298 d~-~~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~~ 339 (466)
T PRK06115 298 ND-HHRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKA 339 (466)
T ss_pred CC-CeecCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 22 2456899999999998653 45899999999999998753
|
|
| >KOG4716|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.9e-18 Score=174.50 Aligned_cols=307 Identities=16% Similarity=0.203 Sum_probs=188.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc--------CCcCceEecCCCCCCCCCCCCccCcccccccccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT--------DNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPK 79 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~--------~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~ 79 (1129)
-.+|.+|||||.+||+|||.++. .|.+|.++|-- -.+||+|. +.|| -++..|.+. ..+-+
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~--~G~kV~~lDfV~PtP~GtsWGlGGTCv---NVGC-----IPKKLMHQA--allG~ 85 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAAD--LGAKVACLDFVKPTPQGTSWGLGGTCV---NVGC-----IPKKLMHQA--ALLGE 85 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHh--cCCcEEEEeecccCCCCCccccCceee---eccc-----ccHHHHHHH--HHHHH
Confidence 45899999999999999999999 67999999831 23789998 4554 334444442 11222
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEec-eeeeeeccccccCCCCceEEeccccCccceEEecc
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVN-KNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDL 158 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~-~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 158 (1129)
.+.+-..|.|......--+.+..+.+-.++..+..+-.-++.++ .+|+.+...+...+..++..+.. .++......+
T Consensus 86 al~da~kyGW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~-~gk~~~~ta~- 163 (503)
T KOG4716|consen 86 ALHDARKYGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNK-KGKERFLTAE- 163 (503)
T ss_pred HHHHHHhhCCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecC-CCceEEeecc-
Confidence 33333445554332234557788888888877777754455553 35666665555555566655442 2233333444
Q ss_pred eeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccc
Q psy12350 159 QVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFAR 238 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 238 (1129)
.+||||| .+|+.|+|||..+--. +
T Consensus 164 ----~fvIatG--~RPrYp~IpG~~Ey~I--------------------------------------------------T 187 (503)
T KOG4716|consen 164 ----NFVIATG--LRPRYPDIPGAKEYGI--------------------------------------------------T 187 (503)
T ss_pred ----eEEEEec--CCCCCCCCCCceeeee--------------------------------------------------c
Confidence 8999999 9999999998533211 1
Q ss_pred cccccccccc-cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccC--CC-----------CeE
Q psy12350 239 CSEDFTEFRK-DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRF--PN-----------NVV 304 (1129)
Q Consensus 239 ~~~~~~~~~~-~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~--~~-----------~i~ 304 (1129)
+.+-|..... .|.+| ||+|++|+|.|..|+..|-+||+..|+-.+..+.. .+ ++.
T Consensus 188 SDDlFsl~~~PGkTLv-----------VGa~YVaLECAgFL~gfg~~vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~ 256 (503)
T KOG4716|consen 188 SDDLFSLPYEPGKTLV-----------VGAGYVALECAGFLKGFGYDVTVMVRSILLRGFDQDMAELVAEHMEERGIKFL 256 (503)
T ss_pred ccccccccCCCCceEE-----------EccceeeeehhhhHhhcCCCcEEEEEEeecccccHHHHHHHHHHHHHhCCcee
Confidence 1222221111 23333 69999999999999999999999998865533210 00 111
Q ss_pred Ec---CCceEEcCCc--eEEcC---C--CEeecCEEEEcccccccCCCCC-CCCCeEeecCc-ccccccccccCCCCCeE
Q psy12350 305 KK---PDIAELTPTG--VRFQD---G--SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKN-VQPLYKHLINIEHPSMC 372 (1129)
Q Consensus 305 ~~---~~v~~~~~~~--v~~~d---g--~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~-~~~l~~~~~~~~~p~l~ 372 (1129)
.. ..|+.+++.. |...+ + -+.+.|+|+||.|-+....-|. +..++.++... .++. ...-..+.|.+|
T Consensus 257 ~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v-~~~e~t~vp~vy 335 (503)
T KOG4716|consen 257 RKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPV-DDEEATNVPYVY 335 (503)
T ss_pred ecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCcccc-ChHHhcCCCceE
Confidence 11 2344554444 22221 2 2348999999999987655432 23455654322 2221 222236789999
Q ss_pred Eecccc-----cccccccccceeeehhhccc
Q psy12350 373 IIGYTY-----RYPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 373 ~~G~~~-----~~~~~~~~~~~~~~a~~~~~ 398 (1129)
.+|..- ..|++. |.+|.+|+.+-+
T Consensus 336 AvGDIl~~kpELTPvAI--qsGrlLa~Rlf~ 364 (503)
T KOG4716|consen 336 AVGDILEDKPELTPVAI--QSGRLLARRLFA 364 (503)
T ss_pred EecceecCCcccchhhh--hhchHHHHHHhc
Confidence 999762 468887 888887775543
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-18 Score=194.61 Aligned_cols=277 Identities=18% Similarity=0.183 Sum_probs=173.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc-ccccCCCCCCCCCCCCccccccC--cccc-c--ccccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG-TWLYTEHIGCDQYGLPVHSSMYK--SLKT-N--LPKDLME 813 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG-~w~~~~~~g~~~~g~p~~~~~y~--~~~~-~--~~~~~~~ 813 (1129)
-.++|+|+|++|+.+++.|.+..++.+++++|+++..-= .|.+.--.|. ++.....++ .+.. + ..-..-+
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~----l~~~~i~~p~~~~~~~~~~v~~~~~~ 79 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGT----LSESEIAIPLRALLRKSGNVQFVQGE 79 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCC----CChhheeccHHHHhcccCceEEEEEE
Confidence 357899999999999999988632488999999874210 1111111110 000000000 0000 0 0000000
Q ss_pred ccCCCCCCC-----CCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeecc-----------CCCCCCCCC----CeEE
Q psy12350 814 LCGYGHKGN-----ADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRD-----------YRTPEPFAG----KQAV 873 (1129)
Q Consensus 814 ~~~~~~~~~-----~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~-----------~~~~~~~~g----k~Vv 873 (1129)
..+...... ....+....-|+..|+.+..+.+||..++.-.+-...+ +...+.... .+|+
T Consensus 80 V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~ 159 (405)
T COG1252 80 VTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIV 159 (405)
T ss_pred EEEEcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEE
Confidence 011111110 01223334455569999999999998774311110000 011111111 3799
Q ss_pred EEcCCccHHHHHHHHHhcCC-------------EEEEEecCCCCccchh-hhhccccEEEEecCCccccccCCCCCeEEc
Q psy12350 874 VVGSGQSGLDITLDIATTGK-------------QAVVVGSGQSGLDITL-DIATRASTVFLSHHSERVTSLCLPNNVVLK 939 (1129)
Q Consensus 874 VVG~G~Sg~eiA~~la~~~~-------------~V~vv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 939 (1129)
|||||.+|+|+|.+|++... +|+++++++..+++.+ .+...+.+.+... +|++.
T Consensus 160 IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~------------GV~v~ 227 (405)
T COG1252 160 IVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKL------------GVEVL 227 (405)
T ss_pred EECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHC------------CCEEE
Confidence 99999999999999987532 8999999998887654 3444444332222 56665
Q ss_pred CC--eeEEeCCcEEecCCcE-eeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc---
Q psy12350 940 PD--VAELTPTGVRFQDGSY-EQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT--- 1013 (1129)
Q Consensus 940 ~~--i~~v~~~~V~~~dG~~-~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--- 1013 (1129)
.+ |+++++++|++++|.+ +++|+||||+|.+++ |++.+-.+.+.+..+...+...+..+++||||++||+...
T Consensus 228 l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~ 306 (405)
T COG1252 228 LGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP 306 (405)
T ss_pred cCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC
Confidence 54 9999999999999995 999999999999997 6565413566665555566777778999999999998642
Q ss_pred ----chhHHHHHHHHHHHHHHcCC
Q psy12350 1014 ----LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1014 ----~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
...+.++.||+++|+++...
T Consensus 307 ~p~P~tAQ~A~Qqg~~~a~ni~~~ 330 (405)
T COG1252 307 RPVPPTAQAAHQQGEYAAKNIKAR 330 (405)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHH
Confidence 34589999999999988643
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-18 Score=203.36 Aligned_cols=272 Identities=20% Similarity=0.270 Sum_probs=165.4
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCcccc-
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPVHSS- 798 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~~~~- 798 (1129)
..+++|||+|++|+++|+.|.+.| .+|+|+|+ +.+||+|.. .||-+ +|++....
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g--~~v~lie~-~~~GG~~~~---~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~ 76 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLG--KKVALIEK-GPLGGTCLN---VGCIPSKALIAAAEAFHEAKHAEEFGIHADGPK 76 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCC--CeEEEEeC-Cccccceec---cceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCc
Confidence 357899999999999999999999 99999999 789999984 34411 11110000
Q ss_pred -ccCccccccc-------ccc----ccccCCCC--------CCC----CCCCCCChhhhhhccCCCCCCCCCCCCCCCC-
Q psy12350 799 -MYKSLKTNLP-------KDL----MELCGYGH--------KGN----ADKSYIGAKDVLENYNHPIYPEFKGKDMCQI- 853 (1129)
Q Consensus 799 -~y~~~~~~~~-------~~~----~~~~~~~~--------~~~----~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g- 853 (1129)
.+..+..... ... .......+ ... ....+.....++.+|+. .|++||.+.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v~~~~~~~d~lIiATGs~--~p~ipg~~~~~~~ 154 (460)
T PRK06292 77 IDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEVNGERIEAKNIVIATGSR--VPPIPGVWLILGD 154 (460)
T ss_pred cCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEECcEEEEeCEEEEeCCCC--CCCCCCCcccCCC
Confidence 0000000000 000 00000000 000 00011112223338888 566777653333
Q ss_pred cEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCC
Q psy12350 854 PILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCL 932 (1129)
Q Consensus 854 ~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1129)
.++++.+.... ...+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+ .+
T Consensus 155 ~~~~~~~~~~~-~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~-------------~l 220 (460)
T PRK06292 155 RLLTSDDAFEL-DKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQK-------------IL 220 (460)
T ss_pred cEECchHHhCc-cccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHH-------------HH
Confidence 34444433322 235799999999999999999999999999999987765542 1111111111 11
Q ss_pred CCCeEEcC--CeeEEeCC---cEEe--cCC--cEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCC
Q psy12350 933 PNNVVLKP--DVAELTPT---GVRF--QDG--SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHP 1002 (1129)
Q Consensus 933 ~~~V~~~~--~i~~v~~~---~V~~--~dG--~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p 1002 (1129)
..+|+++. .+.+++.+ .+++ .+| +++++|.||+|+|++|+.++|. +..|+++++++...+..+ +.++.|
T Consensus 221 ~~~I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~-~~ts~~ 299 (460)
T PRK06292 221 SKEFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEH-TQTSVP 299 (460)
T ss_pred hhccEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCC-cccCCC
Confidence 11144443 36677532 3543 344 4689999999999999988654 346788776554434333 335899
Q ss_pred CcEEEccccccc-hhHHHHHHHHHHHHHHcCC
Q psy12350 1003 TMFILGVPRHTL-LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1003 ~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~ 1033 (1129)
|||++|++.... ..+.+..||+.+|..+.|.
T Consensus 300 ~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 300 GIYAAGDVNGKPPLLHEAADEGRIAAENAAGD 331 (460)
T ss_pred CEEEEEecCCCccchhHHHHHHHHHHHHhcCC
Confidence 999999997643 4589999999999999873
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-18 Score=202.56 Aligned_cols=271 Identities=19% Similarity=0.269 Sum_probs=166.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCcccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPVHSS-- 798 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~~~~-- 798 (1129)
.+++|||+|++|+.+|..+.+.| .+|+|+|+.+.+||+|.. .||-+ +|+.....
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~G--~~V~lie~~~~~GG~c~n---~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~ 79 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADLG--LETVCVERYSTLGGVCLN---VGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKI 79 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCcccccccC---CCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCc
Confidence 57899999999999999999999 999999998889999974 34411 01100000
Q ss_pred ccCcccc-------cccc-----------c----cccccC---CCCCCCCC--CCCCChhhhhhccCCCCC-CCCCCCCC
Q psy12350 799 MYKSLKT-------NLPK-----------D----LMELCG---YGHKGNAD--KSYIGAKDVLENYNHPIY-PEFKGKDM 850 (1129)
Q Consensus 799 ~y~~~~~-------~~~~-----------~----~~~~~~---~~~~~~~~--~~~~~~~~v~~~~~~P~~-P~i~G~~~ 850 (1129)
-|..+.. .... . ...|.+ +....... ..+....-++++|++|.. |.+++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~ 159 (471)
T PRK06467 80 DIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDP 159 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCC
Confidence 0000000 0000 0 000000 00000000 012223334459999974 44555322
Q ss_pred CCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccc
Q psy12350 851 CQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTS 929 (1129)
Q Consensus 851 f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 929 (1129)
.++.+.+...... .+|+|+|||+|.+|+|+|..+++.|.+||++++.+..++. .+.+.....+.
T Consensus 160 ---~v~~~~~~~~~~~-~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~----------- 224 (471)
T PRK06467 160 ---RIWDSTDALELKE-VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKR----------- 224 (471)
T ss_pred ---cEEChHHhhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHH-----------
Confidence 3555554444332 3689999999999999999999999999999987765542 22222111110
Q ss_pred cCCCCCeEEcC--CeeEEe--CCc--EEecCC----cEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceee
Q psy12350 930 LCLPNNVVLKP--DVAELT--PTG--VRFQDG----SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTIN 998 (1129)
Q Consensus 930 ~~~~~~V~~~~--~i~~v~--~~~--V~~~dG----~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~ 998 (1129)
+..+|.+.. .+++++ +++ +++.++ +++++|.||+|+|++|+.+++. +..|+++++++...+..+ +.
T Consensus 225 --l~~~v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~-~~ 301 (471)
T PRK06467 225 --IKKQFNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQ-CR 301 (471)
T ss_pred --HhhceEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCC-cc
Confidence 111133333 366664 233 344442 3589999999999999988654 446788876654333333 34
Q ss_pred cCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 999 IEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 999 ~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
++.||||++|++... ...+.+..||+.++..+.|.
T Consensus 302 t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~ 337 (471)
T PRK06467 302 TNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGK 337 (471)
T ss_pred cCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcCC
Confidence 589999999998654 35689999999999999874
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-18 Score=193.27 Aligned_cols=295 Identities=13% Similarity=0.117 Sum_probs=166.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||++|+++|..|++ .+++|+++|+.+.+||.+.+.. +.+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~~------------------------------~~~ 64 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLAC--LGYEVHVYDKLPEPGGLMLFGI------------------------------PEF 64 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCceeeecC------------------------------ccc
Confidence 45799999999999999999999 6799999999999999876310 000
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccc-cccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKH-LINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
..+.+.+...++.+.+. ++ .+++++.|..+... ....+.+... .... +.....|| +|||
T Consensus 65 ---------~~~~~~~~~~~~~l~~~-~i--~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~d-----~lvi 124 (352)
T PRK12770 65 ---------RIPIERVREGVKELEEA-GV--VFHTRTKVCCGEPLHEEEGDEFVER--IVSL-EELVKKYD-----AVLI 124 (352)
T ss_pred ---------ccCHHHHHHHHHHHHhC-Ce--EEecCcEEeeccccccccccccccc--cCCH-HHHHhhCC-----EEEE
Confidence 01223444455555443 55 67888877654320 0000111111 1011 11224688 9999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccc-hhhhcccccccCCCCCCccchhccccccccccccccc
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSE-KYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE 245 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 245 (1129)
|||. ..|..|++||... .+ ..+. .+...+.. +...+........
T Consensus 125 AtGs-~~~~~~~ipg~~~---~~---------------v~~~~~~~~~~~~----------------~~~~~~~~~~~~~ 169 (352)
T PRK12770 125 ATGT-WKSRKLGIPGEDL---PG---------------VYSALEYLFRIRA----------------AKLGYLPWEKVPP 169 (352)
T ss_pred EeCC-CCCCcCCCCCccc---cC---------------ceeHHHHHHHhhh----------------ccccccccccccc
Confidence 9993 2577788876321 11 1100 00000000 0000000011111
Q ss_pred ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccE-EEEccccCCccccc----------CCCCeEEcCCceEEcC
Q psy12350 246 FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATT-VFLSHHSEHVKKLR----------FPNNVVKKPDIAELTP 314 (1129)
Q Consensus 246 ~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~-V~lv~r~~~~~~~~----------~~~~i~~~~~v~~~~~ 314 (1129)
..+++++| ||+|++|+|+|..|...+.+ |++++|.+...... ..-++.....+.++++
T Consensus 170 ~~g~~vvV-----------iG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~ 238 (352)
T PRK12770 170 VEGKKVVV-----------VGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLELVTPVRIIG 238 (352)
T ss_pred cCCCEEEE-----------ECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEeeccCceeeec
Confidence 12344444 79999999999999888875 99999865321110 0113444556677754
Q ss_pred Cc----eEEc------------------C--CCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCC
Q psy12350 315 TG----VRFQ------------------D--GSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPS 370 (1129)
Q Consensus 315 ~~----v~~~------------------d--g~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ 370 (1129)
++ |.+. + ++++++|.||+|+|++++..++.+..++..+.+..+....+ +..+.|+
T Consensus 239 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~-~~t~~~~ 317 (352)
T PRK12770 239 EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEK-HMTSREG 317 (352)
T ss_pred CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCC-cccCCCC
Confidence 32 2321 2 24679999999999999987765325555554433322222 1246799
Q ss_pred eEEeccccccc--ccccccceeeehhhcccccc
Q psy12350 371 MCIIGYTYRYP--FLHESCGIKVVNKNVQPLYK 401 (1129)
Q Consensus 371 l~~~G~~~~~~--~~~~~~~~~~~a~~~~~~~~ 401 (1129)
+|.+|.....| ......||+.+|.++...+.
T Consensus 318 vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 318 VFAAGDVVTGPSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred EEEEcccccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 99999764322 22334777777777665543
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=5e-18 Score=201.23 Aligned_cols=280 Identities=16% Similarity=0.212 Sum_probs=165.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+|||||||||+||..|++ .|++|+|||+.+.+||.+.+. ++.
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~--~G~~V~vie~~~~~GG~l~~g------------------------------ip~-- 188 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLAR--AGHKVTVFERADRIGGLLRYG------------------------------IPD-- 188 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHh--CCCcEEEEecCCCCCceeeec------------------------------CCc--
Confidence 4799999999999999999999 669999999999999998740 011
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
+....++.+...+.+.++|+ .+++++.|.. +. .. ......|| +||+||
T Consensus 189 --------~~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~-~~---------------~~-~~~~~~~d-----~vvlAt 236 (471)
T PRK12810 189 --------FKLEKEVIDRRIELMEAEGI--EFRTNVEVGK-DI---------------TA-EELLAEYD-----AVFLGT 236 (471)
T ss_pred --------ccCCHHHHHHHHHHHHhCCc--EEEeCCEECC-cC---------------CH-HHHHhhCC-----EEEEec
Confidence 11112345555556667776 7888877631 00 00 00113589 999999
Q ss_pred ccCCC-CCccccccchhhhcccccccCCCCCccccccccc-chhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 169 GHVTL-PSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRS-EKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 169 G~~~~-p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
| +. |..+++||... .| .+. ..|+..... .... .........
T Consensus 237 G--a~~~~~l~ipG~~~---~g---------------V~~~~~~l~~~~~--------------~~~~---~~~~~~~~~ 279 (471)
T PRK12810 237 G--AYKPRDLGIPGRDL---DG---------------VHFAMDFLIQNTR--------------RVLG---DETEPFISA 279 (471)
T ss_pred C--CCCCCcCCCCCccC---CC---------------cEEHHHHHHHHHh--------------hhcc---ccccccccC
Confidence 9 43 66677776321 11 111 011100000 0000 000000001
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccc-cEEEEccccCCccccc--------------------CCCCeEE
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA-TTVFLSHHSEHVKKLR--------------------FPNNVVK 305 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~-~~V~lv~r~~~~~~~~--------------------~~~~i~~ 305 (1129)
. |++|+| ||||++|+|+|..+.+.| ++|+++.+........ ..-++..
T Consensus 280 ~-------gk~VvV----IGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~ 348 (471)
T PRK12810 280 K-------GKHVVV----IGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREF 348 (471)
T ss_pred C-------CCEEEE----ECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEe
Confidence 1 344444 899999999998877766 5899776544221111 0114455
Q ss_pred cCCceEEcC-C-c---eEE-----cCC---------CEeecCEEEEcccccccCC-CCCCCCCeEeecCccccccccccc
Q psy12350 306 KPDIAELTP-T-G---VRF-----QDG---------SYEQVDIILYCTGYTYRYP-FLHESCGIKVVNKNVQPLYKHLIN 365 (1129)
Q Consensus 306 ~~~v~~~~~-~-~---v~~-----~dg---------~~~~~D~VI~atG~~~~~~-~l~~~~~~~~~~~~~~~l~~~~~~ 365 (1129)
...++++.+ + . |.+ .+| .++++|.||+|+|++++.. ++. ..++.++.+..+......+.
T Consensus 349 ~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~-~~gl~~~~~g~i~vd~~~~~ 427 (471)
T PRK12810 349 NVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLA-QFGVELDERGRVAAPDNAYQ 427 (471)
T ss_pred ccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhcc-ccCcccCCCCCEEeCCCccc
Confidence 666777753 2 2 222 222 3579999999999999854 554 45566654443332211233
Q ss_pred CCCCCeEEeccccccc-c-cccccceeeehhhcccccccc
Q psy12350 366 IEHPSMCIIGYTYRYP-F-LHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 366 ~~~p~l~~~G~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
++.|++|.+|.....+ + ..+..|++.+|.++..++.+.
T Consensus 428 Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~~~L~g~ 467 (471)
T PRK12810 428 TSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAYLMGS 467 (471)
T ss_pred CCCCCEEEccccCCCchhHHHHHHHHHHHHHHHHHHHhcC
Confidence 6789999999886433 2 234488888888887766554
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-18 Score=203.01 Aligned_cols=264 Identities=15% Similarity=0.221 Sum_probs=166.1
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcc-ccccC---ccccccccccccccC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVH-SSMYK---SLKTNLPKDLMELCG 816 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~-~~~y~---~~~~~~~~~~~~~~~ 816 (1129)
.++|||+|++|+.+|.+|++.+++.+|+|+|+++.++ +. .| ++|.. ..... .+....+..+.+..+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~--~~-----~~---~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS--FA-----NC---ALPYYIGEVVEDRKYALAYTPEKFYDRKQ 72 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc--cc-----cC---CcchhhcCccCCHHHcccCCHHHHHHhCC
Confidence 5799999999999999999887779999999988654 11 11 00000 00000 000000000000000
Q ss_pred CC---------CCCCC----------CC--CCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCC-------CCCC
Q psy12350 817 YG---------HKGNA----------DK--SYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTP-------EPFA 868 (1129)
Q Consensus 817 ~~---------~~~~~----------~~--~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~-------~~~~ 868 (1129)
.. +..+. .. ......-++++|+.|+.|++++. .++...++.+. ....
T Consensus 73 i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~ 147 (438)
T PRK13512 73 ITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESD-----ITFTLRNLEDTDAIDQFIKANQ 147 (438)
T ss_pred CEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCC-----CeEEecCHHHHHHHHHHHhhcC
Confidence 00 00000 00 01223345569999998876542 23333322211 1234
Q ss_pred CCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEE
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAEL 945 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v 945 (1129)
+++|+|||+|.+|+|+|..|++.|++||++++.+..++. .+.+.....+. +. ..+|+++.+ ++++
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~---------l~---~~gI~i~~~~~v~~i 215 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDE---------LD---KREIPYRLNEEIDAI 215 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHH---------HH---hcCCEEEECCeEEEE
Confidence 789999999999999999999999999999987654432 11111111111 11 125666644 8888
Q ss_pred eCCcEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----------c
Q psy12350 946 TPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----------L 1014 (1129)
Q Consensus 946 ~~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----------~ 1014 (1129)
++..|++++|+++++|.||+|+|++|+.+++.. .|+.+++++...+... +.++.||||++|++... .
T Consensus 216 ~~~~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~-~gl~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~~~~~~~~~~~ 293 (438)
T PRK13512 216 NGNEVTFKSGKVEHYDMIIEGVGTHPNSKFIES-SNIKLDDKGFIPVNDK-FETNVPNIYAIGDIITSHYRHVDLPASVP 293 (438)
T ss_pred eCCEEEECCCCEEEeCEEEECcCCCcChHHHHh-cCcccCCCCcEEECCC-cccCCCCEEEeeeeEEeeeccCCCceecc
Confidence 888899999999999999999999999888765 6777766554444443 34689999999998641 2
Q ss_pred hhHHHHHHHHHHHHHHcCC
Q psy12350 1015 LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1015 ~~~~~e~qa~~~a~~l~g~ 1033 (1129)
..+.+..||+.+++.+.|.
T Consensus 294 la~~A~~~a~~~a~ni~g~ 312 (438)
T PRK13512 294 LAWGAHRAASIVAEQIAGN 312 (438)
T ss_pred cchHHHHHHHHHHHHhcCC
Confidence 3356888999999999874
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-18 Score=202.00 Aligned_cols=180 Identities=21% Similarity=0.300 Sum_probs=124.2
Q ss_pred hhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhh
Q psy12350 834 LENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIA 912 (1129)
Q Consensus 834 ~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~ 912 (1129)
+++|+.|+.|++||.+ .++++.++.+... +|+|+|||+|.+|+|+|..+++.|++||++++++..++. .+.+.
T Consensus 208 IATGS~P~~P~IpG~~----~v~ts~~~~~l~~--pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~~i~ 281 (561)
T PTZ00058 208 IAVGNKPIFPDVKGKE----FTISSDDFFKIKE--AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETII 281 (561)
T ss_pred EecCCCCCCCCCCCce----eEEEHHHHhhccC--CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccCCHHHH
Confidence 3399999999999974 2566666654433 799999999999999999999999999999987655432 22222
Q ss_pred ccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC---c--EEecCC-cEeeccEEEEccCccCcCCCCCC-CCCee
Q psy12350 913 TRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT---G--VRFQDG-SYEQVDIILCCTGYSNHYPFLHE-SCGIK 983 (1129)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~---~--V~~~dG-~~~~~D~VI~aTG~~~~~~fl~~-~~g~~ 983 (1129)
....+.+. ..+|++..+ +.+++++ + +.+.++ +++++|.||+|+|++|+..+|.. ..++.
T Consensus 282 ~~l~~~L~------------~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~ 349 (561)
T PTZ00058 282 NELENDMK------------KNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK 349 (561)
T ss_pred HHHHHHHH------------HCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee
Confidence 21111110 125665544 6777542 2 334444 46899999999999999887753 23443
Q ss_pred ecCCcccccccceeecCCCCcEEEccccc----------------------------------c-chhHHHHHHHHHHHH
Q psy12350 984 VVNKNVQPLYKHTINIEHPTMFILGVPRH----------------------------------T-LLFNLFDLQVRLFQQ 1028 (1129)
Q Consensus 984 ~~~~~~~~ly~~~~~~~~p~l~~iG~~~~----------------------------------~-~~~~~~e~qa~~~a~ 1028 (1129)
.+ ++...+..+ +.++.||||++|++.. . ...+.+..||+.+|.
T Consensus 350 ~~-~G~I~VDe~-lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ 427 (561)
T PTZ00058 350 TP-KGYIKVDDN-QRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLAD 427 (561)
T ss_pred cC-CCeEEECcC-CccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHH
Confidence 33 332233222 3468999999999976 2 345899999999999
Q ss_pred HHcCC
Q psy12350 1029 LMQGH 1033 (1129)
Q Consensus 1029 ~l~g~ 1033 (1129)
.+.|.
T Consensus 428 ni~g~ 432 (561)
T PTZ00058 428 RLFGP 432 (561)
T ss_pred HHhCC
Confidence 99874
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=198.18 Aligned_cols=267 Identities=19% Similarity=0.216 Sum_probs=172.7
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccC-------------cccc--
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYK-------------SLKT-- 805 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~-------------~~~~-- 805 (1129)
+++|||+|++|+.+|..+.+.| .+|+++|++ .+||+|.. .||- |.+..+.. ....
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g--~~v~~~e~~-~~gG~c~~---~gci----PsK~l~~~a~~~~~~~~~~~~g~~~~~ 72 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLG--ADVTVIERD-GLGGAAVL---TDCV----PSKTLIATAEVRTELRRAAELGIRFID 72 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCC--CeEEEEEcc-CCCCcccc---cCCc----chHHHHHHHHHHHHHHHHHhCCccccc
Confidence 5789999999999999999999 999999986 59999984 3552 21110000 0000
Q ss_pred ------ccc------------------cccc-----------cc----cC-C--CCCCCCCC--CCCChhhhhhccCCCC
Q psy12350 806 ------NLP------------------KDLM-----------EL----CG-Y--GHKGNADK--SYIGAKDVLENYNHPI 841 (1129)
Q Consensus 806 ------~~~------------------~~~~-----------~~----~~-~--~~~~~~~~--~~~~~~~v~~~~~~P~ 841 (1129)
+.. ..+. .+ .+ . ........ .+....-|+++|+.|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 73 DGEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR 152 (466)
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCC
Confidence 000 0000 00 00 0 00000000 1223334455999998
Q ss_pred CCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEE
Q psy12350 842 YPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFL 920 (1129)
Q Consensus 842 ~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~ 920 (1129)
.|++++.+. ..++++.+..+... .+++|+|||+|.+|+|+|..|++.+++||++++.+..++. .+.......+.
T Consensus 153 ~~p~~~~~~--~~v~~~~~~~~~~~-~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~-- 227 (466)
T PRK07845 153 ILPTAEPDG--ERILTWRQLYDLDE-LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEV-- 227 (466)
T ss_pred CCCCCCCCC--ceEEeehhhhcccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHH--
Confidence 877655432 24666665544333 3689999999999999999999999999999987655432 22211111111
Q ss_pred ecCCccccccCCCCCeEEcCC--eeEEe--CCc--EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccc
Q psy12350 921 SHHSERVTSLCLPNNVVLKPD--VAELT--PTG--VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLY 993 (1129)
Q Consensus 921 ~~~~~~~~~~~~~~~V~~~~~--i~~v~--~~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly 993 (1129)
+. ..+|++..+ +.+++ +++ +.+.+|+++++|.||+|+|++|+...+. +..|+++++++...+.
T Consensus 228 -------L~---~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd 297 (466)
T PRK07845 228 -------FA---RRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVD 297 (466)
T ss_pred -------HH---HCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeEC
Confidence 11 125666654 77774 333 5667899999999999999999987643 3477888765544444
Q ss_pred cceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 994 KHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 994 ~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.+ ..++.||||++|++... ...+.+..||+.++..+.|.
T Consensus 298 ~~-~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 337 (466)
T PRK07845 298 RV-SRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGE 337 (466)
T ss_pred CC-cccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcCC
Confidence 33 34589999999998765 45689999999999998874
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.5e-18 Score=200.32 Aligned_cols=267 Identities=16% Similarity=0.246 Sum_probs=168.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccc-----cCcccc-----ccc-
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSM-----YKSLKT-----NLP- 808 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~-----y~~~~~-----~~~- 808 (1129)
.+++|||+|++|+++|..+.+.| .+|+|+|+ +.+||+|... ||- |.+..+ +..+.. ...
T Consensus 5 ~DvvIIG~GpaG~~AA~~aa~~G--~~V~lie~-~~~GG~c~~~---gci----Psk~l~~~~~~~~~~~~~~~~~gi~~ 74 (466)
T PRK07818 5 YDVVVLGAGPGGYVAAIRAAQLG--LKTAVVEK-KYWGGVCLNV---GCI----PSKALLRNAELAHIFTKEAKTFGISG 74 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEec-CCCCCceecC---Ccc----ccHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 48899999999999999999999 99999998 4799999843 442 211100 000000 000
Q ss_pred c------------------------ccccccCCC--------CCCC-------CC--CCCCChhhhhhccCCCCCCCCCC
Q psy12350 809 K------------------------DLMELCGYG--------HKGN-------AD--KSYIGAKDVLENYNHPIYPEFKG 847 (1129)
Q Consensus 809 ~------------------------~~~~~~~~~--------~~~~-------~~--~~~~~~~~v~~~~~~P~~P~i~G 847 (1129)
. ...+..... .... .. ..+....-++++|+.|+.| ||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~--pg 152 (466)
T PRK07818 75 EVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLL--PG 152 (466)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC--CC
Confidence 0 000000000 0000 00 0112223344499999875 66
Q ss_pred CCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccch-hhhhccccEEEEecCCcc
Q psy12350 848 KDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDIT-LDIATRASTVFLSHHSER 926 (1129)
Q Consensus 848 ~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 926 (1129)
.+ +.+.++++.+.... ...+++|+|||+|.+|+|+|..|++.|.+|+++++.+..++.. +.......+.
T Consensus 153 ~~-~~~~v~~~~~~~~~-~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~-------- 222 (466)
T PRK07818 153 TS-LSENVVTYEEQILS-RELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQ-------- 222 (466)
T ss_pred CC-CCCcEEchHHHhcc-ccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHH--------
Confidence 53 22345554432221 2347899999999999999999999999999999876554432 1121111111
Q ss_pred ccccCCCCCeEEcCC--eeEEeCCc----EEec--CCc--EeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccc
Q psy12350 927 VTSLCLPNNVVLKPD--VAELTPTG----VRFQ--DGS--YEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKH 995 (1129)
Q Consensus 927 ~~~~~~~~~V~~~~~--i~~v~~~~----V~~~--dG~--~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~ 995 (1129)
+. ..+|++..+ |+++++++ +.+. ||+ ++++|.||+|+|++|+.+++. +..|+.+++++...+..+
T Consensus 223 -l~---~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~ 298 (466)
T PRK07818 223 -YK---KLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDY 298 (466)
T ss_pred -HH---HCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCC
Confidence 11 125666654 77776432 4443 674 689999999999999987653 346777766554444333
Q ss_pred eeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 996 TINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 996 ~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+.++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 299 -~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g~ 336 (466)
T PRK07818 299 -MRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGA 336 (466)
T ss_pred -cccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 34589999999998754 45689999999999999875
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=196.47 Aligned_cols=263 Identities=17% Similarity=0.200 Sum_probs=156.8
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCc-cccccccccccc---
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKS-LKTNLPKDLMEL--- 814 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~-~~~~~~~~~~~~--- 814 (1129)
.-+++|||+|++|+++|..|.+.| ++|+|||+.+.+||++.+. +|... +-.. +.......+..+
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G--~~V~v~e~~~~~GG~l~~g---------ip~~~-l~~~~~~~~~~~~~~~~gv~ 207 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMG--YDVTIFEALHEPGGVLVYG---------IPEFR-LPKETVVKKEIENIKKLGVK 207 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCCCCeeeec---------CCCcc-CCccHHHHHHHHHHHHcCCE
Confidence 346899999999999999999999 9999999999999998742 22100 0000 000000000000
Q ss_pred --cCCCCCCC----C-CCCCCChhhhhhccC-CCCCCCCCCCCCCCCcEEeeccCCC-------------CCCCCCCeEE
Q psy12350 815 --CGYGHKGN----A-DKSYIGAKDVLENYN-HPIYPEFKGKDMCQIPILHSRDYRT-------------PEPFAGKQAV 873 (1129)
Q Consensus 815 --~~~~~~~~----~-~~~~~~~~~v~~~~~-~P~~P~i~G~~~f~g~~~hs~~~~~-------------~~~~~gk~Vv 873 (1129)
.+...... . ...+.....++.+|+ .|+.|++||.+. . .++++.++.. .....||+|+
T Consensus 208 i~~~~~v~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~-~-gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~Vv 285 (464)
T PRK12831 208 IETNVVVGKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENL-N-GVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVA 285 (464)
T ss_pred EEcCCEECCcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCC-c-CcEEHHHHHHHHHhcccccccccCcccCCCeEE
Confidence 00000000 0 001112334455887 799999999763 2 2444433321 1234689999
Q ss_pred EEcCCccHHHHHHHHHhcCCEEEEEecCCC-CccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC--C
Q psy12350 874 VVGSGQSGLDITLDIATTGKQAVVVGSGQS-GLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP--T 948 (1129)
Q Consensus 874 VVG~G~Sg~eiA~~la~~~~~V~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~ 948 (1129)
|||+|++|+|+|..+++.|++|+++.+... .++........+. ..+|++... +.++.. +
T Consensus 286 VIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~----------------~eGV~i~~~~~~~~i~~~~~ 349 (464)
T PRK12831 286 VVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAK----------------EEGVIFDLLTNPVEILGDEN 349 (464)
T ss_pred EECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHH----------------HcCCEEEecccceEEEecCC
Confidence 999999999999999999999999976432 1111000000000 112322211 222211 1
Q ss_pred c----EEe------------------cCCc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCc
Q psy12350 949 G----VRF------------------QDGS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTM 1004 (1129)
Q Consensus 949 ~----V~~------------------~dG~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l 1004 (1129)
+ |++ .+|+ ++++|.||+|+|+.++..++....|+.+++.+...+......++.|+|
T Consensus 350 g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgV 429 (464)
T PRK12831 350 GWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGV 429 (464)
T ss_pred CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCE
Confidence 1 111 1333 589999999999999987776546777766554444444456789999
Q ss_pred EEEcccccc-chhHHHHHHHHHHHHHHc
Q psy12350 1005 FILGVPRHT-LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1005 ~~iG~~~~~-~~~~~~e~qa~~~a~~l~ 1031 (1129)
|++|++..+ .....+..|++.+|..+.
T Consensus 430 fAaGD~~~g~~~v~~Ai~~G~~AA~~I~ 457 (464)
T PRK12831 430 FAGGDAVTGAATVILAMGAGKKAAKAID 457 (464)
T ss_pred EEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 999998764 345677777777776653
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.6e-18 Score=201.38 Aligned_cols=267 Identities=16% Similarity=0.231 Sum_probs=166.2
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcccc-----ccCccc-----------
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSS-----MYKSLK----------- 804 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~-----~y~~~~----------- 804 (1129)
+++|||+|++|+.+|.+|.+.| .+|+|+|+ +.+||+|.. .||- |.+.. .+..+.
T Consensus 3 DvvVIG~G~aGl~aA~~la~~G--~~v~lie~-~~~GG~~~~---~gc~----Psk~l~~~~~~~~~~~~~~~~g~~~~~ 72 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQLG--LKVALVEK-EYLGGTCLN---VGCI----PTKALLHSAEVYDEIKHAKDYGIEVEN 72 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCC--CeEEEEec-CCCCCceee---cCcc----chHHHHHHhhHHHHHHHHHhcCCCCCC
Confidence 6899999999999999999999 99999999 889999973 3442 21110 000000
Q ss_pred --ccccc-------------------------cc----ccccC---CCCCCCCC-CCCCChhhhhhccCCCCCCCCC-CC
Q psy12350 805 --TNLPK-------------------------DL----MELCG---YGHKGNAD-KSYIGAKDVLENYNHPIYPEFK-GK 848 (1129)
Q Consensus 805 --~~~~~-------------------------~~----~~~~~---~~~~~~~~-~~~~~~~~v~~~~~~P~~P~i~-G~ 848 (1129)
.+... +. ..+.+ +....... ..+.....++++|+.|+.|++| +.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~ 152 (461)
T TIGR01350 73 VSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDF 152 (461)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCC
Confidence 00000 00 00000 00000000 0122223344499999998887 33
Q ss_pred CCCCCc-EEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccch-hhhhccccEEEEecCCcc
Q psy12350 849 DMCQIP-ILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDIT-LDIATRASTVFLSHHSER 926 (1129)
Q Consensus 849 ~~f~g~-~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 926 (1129)
.+. ++++.+.... ...+|+|+|||+|.+|+|+|..|++.+.+|+++++.+..++.. +.+.....+
T Consensus 153 ---~~~~~~~~~~~~~~-~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~--------- 219 (461)
T TIGR01350 153 ---DGEVVITSTGALNL-KEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAK--------- 219 (461)
T ss_pred ---CCceEEcchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHH---------
Confidence 233 3333333222 2247899999999999999999999999999999876554321 111111111
Q ss_pred ccccCCCCCeEEcCC--eeEEe--CCcE--EecCC--cEeeccEEEEccCccCcCCCC-CCCCCeeecCCccccccccee
Q psy12350 927 VTSLCLPNNVVLKPD--VAELT--PTGV--RFQDG--SYEQVDIILCCTGYSNHYPFL-HESCGIKVVNKNVQPLYKHTI 997 (1129)
Q Consensus 927 ~~~~~~~~~V~~~~~--i~~v~--~~~V--~~~dG--~~~~~D~VI~aTG~~~~~~fl-~~~~g~~~~~~~~~~ly~~~~ 997 (1129)
.+. ..+|++..+ +.+++ ++++ .+.+| +++++|.||+|+|++|+.+.+ -+..++.++.++...+... +
T Consensus 220 ~l~---~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~-l 295 (461)
T TIGR01350 220 ALK---KKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEY-M 295 (461)
T ss_pred HHH---HcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCC-c
Confidence 111 124665543 77665 3344 44567 478999999999999998732 2336777776554334332 3
Q ss_pred ecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCCC
Q psy12350 998 NIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 998 ~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
.++.|+||++|++... ...+.+..||+.+|..+.+..
T Consensus 296 ~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (461)
T TIGR01350 296 RTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKE 333 (461)
T ss_pred ccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 4578999999998754 356889999999999998753
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.2e-18 Score=201.34 Aligned_cols=275 Identities=15% Similarity=0.169 Sum_probs=165.7
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCC-Ccccccc----Cccc---ccc--ccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGL-PVHSSMY----KSLK---TNL--PKD 810 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~-p~~~~~y----~~~~---~~~--~~~ 810 (1129)
.++|||+|++|+++|..|++.++..+|+|||+++..+- .....+.... +. +...... +.+. .+. ...
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 78 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSF--GACGLPYFVG-GFFDDPNTMIARTPEEFIKSGIDVKTEHE 78 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCccee--ecCCCceEec-cccCCHHHhhcCCHHHHHHCCCeEEecCE
Confidence 46899999999999999999886689999999987541 1000000000 00 0000000 0000 000 000
Q ss_pred cccc--cC--CCCCC-CCCCCCC--ChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCC-------CCCCCeEEEEc
Q psy12350 811 LMEL--CG--YGHKG-NADKSYI--GAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPE-------PFAGKQAVVVG 876 (1129)
Q Consensus 811 ~~~~--~~--~~~~~-~~~~~~~--~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~-------~~~gk~VvVVG 876 (1129)
.... .. +.... .....+. ...-++.+|+.|+.|++||++. ..+++...+.+.. +..+++|+|||
T Consensus 79 V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~--~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG 156 (444)
T PRK09564 79 VVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINL--ENVYTLKSMEDGLALKELLKDEEIKNIVIIG 156 (444)
T ss_pred EEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCC--CCEEEECCHHHHHHHHHHHhhcCCCEEEEEC
Confidence 0000 00 00000 0001111 2334556999999999999863 2455555443221 23579999999
Q ss_pred CCccHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc---
Q psy12350 877 SGQSGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG--- 949 (1129)
Q Consensus 877 ~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~--- 949 (1129)
+|.+|+|+|..+.+.+++|+++.+.+..++ +.+.+.....+.+. ..+|++..+ +.++++++
T Consensus 157 gG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~------------~~gI~v~~~~~v~~i~~~~~~~ 224 (444)
T PRK09564 157 AGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELR------------ENGVELHLNEFVKSLIGEDKVE 224 (444)
T ss_pred CCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHH------------HCCCEEEcCCEEEEEecCCcEE
Confidence 999999999999999999999987664432 22222221111110 114555543 77776443
Q ss_pred EEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----------chhHH
Q psy12350 950 VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----------LLFNL 1018 (1129)
Q Consensus 950 V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----------~~~~~ 1018 (1129)
....++.++++|.||+|+|++++.+++.. .|+++++++...+..++ .++.||||++|++... ...+.
T Consensus 225 ~v~~~~~~i~~d~vi~a~G~~p~~~~l~~-~gl~~~~~g~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~ 302 (444)
T PRK09564 225 GVVTDKGEYEADVVIVATGVKPNTEFLED-TGLKTLKNGAIIVDEYG-ETSIENIYAAGDCATIYNIVSNKNVYVPLATT 302 (444)
T ss_pred EEEeCCCEEEcCEEEECcCCCcCHHHHHh-cCccccCCCCEEECCCc-ccCCCCEEEeeeEEEEEeccCCCeeeccchHH
Confidence 22345557999999999999999888765 67776554433333333 3589999999998642 24578
Q ss_pred HHHHHHHHHHHHcCCC
Q psy12350 1019 FDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 1019 ~e~qa~~~a~~l~g~~ 1034 (1129)
+..||+.+|+++.|..
T Consensus 303 A~~qg~~~a~ni~g~~ 318 (444)
T PRK09564 303 ANKLGRMVGENLAGRH 318 (444)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999998753
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-17 Score=194.92 Aligned_cols=270 Identities=19% Similarity=0.234 Sum_probs=167.9
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCcc----c
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPVH----S 797 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~~----~ 797 (1129)
.++|||+|++|+++|..+.+.| .+|+|+||+ .+||+|.. .||-+ +|++.. .
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g--~~V~lie~~-~~GG~c~n---~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 75 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNG--KNVTLIDEA-DLGGTCLN---EGCMPTKSLLESAEVHDKVKKANHFGITLPNGSIS 75 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCC--CcEEEEECC-cccccCCC---CccccchHHHHHHHHHHHHHHHHhcCccccCCCCc
Confidence 5689999999999999999999 999999986 59999984 35521 111100 0
Q ss_pred cccCcccccccc----------ccccccCCCC-------CCC--------CC-CCCCChhhhhhccCCCCCCCCCCCCCC
Q psy12350 798 SMYKSLKTNLPK----------DLMELCGYGH-------KGN--------AD-KSYIGAKDVLENYNHPIYPEFKGKDMC 851 (1129)
Q Consensus 798 ~~y~~~~~~~~~----------~~~~~~~~~~-------~~~--------~~-~~~~~~~~v~~~~~~P~~P~i~G~~~f 851 (1129)
.-|..+...... ....-....+ ... .. ..+....-++++|+.|+.|+++|.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~- 154 (458)
T PRK06912 76 IDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDG- 154 (458)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCC-
Confidence 000000000000 0000000000 000 00 01112223344999999888887643
Q ss_pred CCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCcccccc
Q psy12350 852 QIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSL 930 (1129)
Q Consensus 852 ~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 930 (1129)
..++++.+...... .+++|+|||+|.+|+|+|..+++.+.+|+++++.+..++. .+.+.....+ .+.
T Consensus 155 -~~v~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~---------~L~- 222 (458)
T PRK06912 155 -KWIINSKHAMSLPS-IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILRE---------KLE- 222 (458)
T ss_pred -CeEEcchHHhCccc-cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHH---------HHH-
Confidence 23556554443333 3689999999999999999999999999999987655432 1111111111 111
Q ss_pred CCCCCeEEcCC--eeEEeCCc--EEec-CCc--EeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCC
Q psy12350 931 CLPNNVVLKPD--VAELTPTG--VRFQ-DGS--YEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHP 1002 (1129)
Q Consensus 931 ~~~~~V~~~~~--i~~v~~~~--V~~~-dG~--~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p 1002 (1129)
..+|+++.+ |.+++.++ +.+. +|+ ++++|.||+|||++|+.+++. +..|+.+++++ ..+..+ +.++.|
T Consensus 223 --~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~-~~ts~~ 298 (458)
T PRK06912 223 --NDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEH-MQTNVP 298 (458)
T ss_pred --HCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCC-eecCCC
Confidence 125666554 77776433 4443 443 589999999999999987664 34577776655 334333 345899
Q ss_pred CcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1003 TMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1003 ~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
|||++|++... ...+.+..|++.++..+.|.
T Consensus 299 ~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~ 330 (458)
T PRK06912 299 HIYACGDVIGGIQLAHVAFHEGTTAALHASGE 330 (458)
T ss_pred CEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 99999998764 45688999999999999875
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.1e-18 Score=197.94 Aligned_cols=181 Identities=17% Similarity=0.210 Sum_probs=125.8
Q ss_pred ccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhcc
Q psy12350 836 NYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATR 914 (1129)
Q Consensus 836 ~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~ 914 (1129)
+|+.|..|++.+.+. -.++.+.+.....+ .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+...
T Consensus 139 TGs~p~~p~~~~~~~--~~~~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~ 215 (452)
T TIGR03452 139 AGSRPYIPPAIADSG--VRYHTNEDIMRLPE-LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDR 215 (452)
T ss_pred ECCCCCCCCCCCCCC--CEEEcHHHHHhhhh-cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHH
Confidence 999999887544221 12333333322222 3799999999999999999999999999999987654432 2222211
Q ss_pred ccEEEEecCCccccccCCCCCeEEcCC--eeEEeC--Cc--EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCC
Q psy12350 915 ASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP--TG--VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNK 987 (1129)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~ 987 (1129)
..+ .+..+|+++.+ +.+++. ++ +.+.+|+++++|.||+|+|++|+..++. +..|++++++
T Consensus 216 l~~-------------~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~ 282 (452)
T TIGR03452 216 FTE-------------IAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDED 282 (452)
T ss_pred HHH-------------HHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCC
Confidence 111 01124555543 777753 33 5567888899999999999999988875 3468888766
Q ss_pred cccccccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 988 NVQPLYKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 988 ~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+...+..+ +.++.||||++|++... ...+.+..||+.+|+++.|.
T Consensus 283 G~i~vd~~-~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 283 GRIKVDEY-GRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHP 328 (452)
T ss_pred CcEeeCCC-cccCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence 54444444 34789999999999865 34588999999999999864
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-17 Score=197.80 Aligned_cols=258 Identities=16% Similarity=0.145 Sum_probs=161.9
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC----CCCCCCCCCCccccccCccccccccccccc-
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE----HIGCDQYGLPVHSSMYKSLKTNLPKDLMEL- 814 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~----~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~- 814 (1129)
.+++|||+|++|+++|.+|.+.| ++++|+++ .+||+|.... +++ ++. .....+..........+
T Consensus 212 ~dvvIIGgGpaGl~aA~~la~~G--~~v~li~~--~~GG~~~~~~~~~~~~~-----~~~--~~~~~l~~~l~~~~~~~g 280 (517)
T PRK15317 212 YDVLVVGGGPAGAAAAIYAARKG--IRTGIVAE--RFGGQVLDTMGIENFIS-----VPE--TEGPKLAAALEEHVKEYD 280 (517)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CcEEEEec--CCCCeeeccCcccccCC-----CCC--CCHHHHHHHHHHHHHHCC
Confidence 47899999999999999999999 99999986 4999986321 111 000 00000000000000000
Q ss_pred ---------cCCCCC-------CCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCC
Q psy12350 815 ---------CGYGHK-------GNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSG 878 (1129)
Q Consensus 815 ---------~~~~~~-------~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G 878 (1129)
...... ......+.....++++|+.|+.|++||.++|.+..+|.+...+...++||+|+|||+|
T Consensus 281 v~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG 360 (517)
T PRK15317 281 VDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGG 360 (517)
T ss_pred CEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCC
Confidence 000000 0001122233344559999999999998888888888776666556789999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----cEE
Q psy12350 879 QSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----GVR 951 (1129)
Q Consensus 879 ~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~ 951 (1129)
++|+|+|..|+..+++|+++.+.+..... .. +.. .+.. ..+|+++.+ +.++.++ +++
T Consensus 361 ~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~-~~---------l~~----~l~~--~~gI~i~~~~~v~~i~~~~g~v~~v~ 424 (517)
T PRK15317 361 NSGVEAAIDLAGIVKHVTVLEFAPELKAD-QV---------LQD----KLRS--LPNVTIITNAQTTEVTGDGDKVTGLT 424 (517)
T ss_pred HHHHHHHHHHHhcCCEEEEEEECcccccc-HH---------HHH----HHhc--CCCcEEEECcEEEEEEcCCCcEEEEE
Confidence 99999999999999999999875432110 00 000 0100 126666654 7777655 255
Q ss_pred ec---CCc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc--hhHHHHHHHH
Q psy12350 952 FQ---DGS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL--LFNLFDLQVR 1024 (1129)
Q Consensus 952 ~~---dG~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~--~~~~~e~qa~ 1024 (1129)
+. +|+ ++++|.|++|+|++|+.+++... +.++.++....... ..++.||||++|++.... ....+..++.
T Consensus 425 ~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~--v~~~~~g~i~vd~~-l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~ 501 (517)
T PRK15317 425 YKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT--VELNRRGEIIVDAR-GATSVPGVFAAGDCTTVPYKQIIIAMGEGA 501 (517)
T ss_pred EEECCCCcEEEEEcCEEEEeECCccCchHHhhh--eeeCCCCcEEECcC-CCCCCCCEEECccccCCCCCEEEEhhhhHH
Confidence 54 343 47999999999999998888653 56655443333333 346899999999987542 2344444444
Q ss_pred HHH
Q psy12350 1025 LFQ 1027 (1129)
Q Consensus 1025 ~~a 1027 (1129)
.+|
T Consensus 502 ~Aa 504 (517)
T PRK15317 502 KAA 504 (517)
T ss_pred HHH
Confidence 444
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-17 Score=202.64 Aligned_cols=283 Identities=15% Similarity=0.185 Sum_probs=163.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||..|++ .|++|+|||+.+.+||++.|. ++.|
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~~~GG~l~~g------------------------------ip~~ 373 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHPEIGGLLTFG------------------------------IPAF 373 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceeeec------------------------------CCCc
Confidence 35799999999999999999999 679999999999999998851 0111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
....++.++..+.++++|+ .++++++|..- +++.+ ....|| +|++|
T Consensus 374 ----------~l~~~~~~~~~~~~~~~Gv--~~~~~~~v~~~-----------i~~~~------~~~~~D-----avilA 419 (654)
T PRK12769 374 ----------KLDKSLLARRREIFSAMGI--EFELNCEVGKD-----------ISLES------LLEDYD-----AVFVG 419 (654)
T ss_pred ----------cCCHHHHHHHHHHHHHCCe--EEECCCEeCCc-----------CCHHH------HHhcCC-----EEEEe
Confidence 1112445555566677776 78888876310 00100 112489 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccc-hhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSE-KYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||.+. +..+.+||.. ..| .+.. .|+.... .............+...
T Consensus 420 tGa~~-~~~l~i~g~~---~~G---------------v~~a~~~l~~~~--------------~~~~~~~~~~~~~~~~~ 466 (654)
T PRK12769 420 VGTYR-SMKAGLPNED---APG---------------VYDALPFLIANT--------------KQVMGLEELPEEPFINT 466 (654)
T ss_pred CCCCC-CCCCCCCCCC---CCC---------------eEEhHHHHHHHH--------------hhhccCccccccccccC
Confidence 99532 3345555521 111 1110 0100000 00000000000000011
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccc-cEEEEccccCCc-cccc---------CCCCeEEcCCceEEc--
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA-TTVFLSHHSEHV-KKLR---------FPNNVVKKPDIAELT-- 313 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~-~~V~lv~r~~~~-~~~~---------~~~~i~~~~~v~~~~-- 313 (1129)
. |++|+| ||||++|+|+|..+.+.| ++|++++|++.. ++.. ..-++.....+.++.
T Consensus 467 ~-------gk~VvV----IGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~ 535 (654)
T PRK12769 467 A-------GLNVVV----LGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELN 535 (654)
T ss_pred C-------CCeEEE----ECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCeEEeccCcEEEEEC
Confidence 2 344444 899999999999877776 589999987543 1110 011344556666664
Q ss_pred CCc----eEEc---------CC---------C--EeecCEEEEcccccccC-CCCCCCCCeEeecCccccccc---cccc
Q psy12350 314 PTG----VRFQ---------DG---------S--YEQVDIILYCTGYTYRY-PFLHESCGIKVVNKNVQPLYK---HLIN 365 (1129)
Q Consensus 314 ~~~----v~~~---------dg---------~--~~~~D~VI~atG~~~~~-~~l~~~~~~~~~~~~~~~l~~---~~~~ 365 (1129)
+++ |.+. +| + ++++|.||+|+|++++. .++. ..++.++.+..+.... ..+-
T Consensus 536 ~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~-~~gl~~~~~G~i~vd~~~~~~~~ 614 (654)
T PRK12769 536 EQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLE-SHGVTVDKWGRIIADVESQYRYQ 614 (654)
T ss_pred CCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcccccc-ccCCcCCCCCCEEeCCCcccCcc
Confidence 221 3331 22 2 47999999999999984 4555 4556665544322211 1234
Q ss_pred CCCCCeEEecccccccc--cccccceeeehhhcccccc
Q psy12350 366 IEHPSMCIIGYTYRYPF--LHESCGIKVVNKNVQPLYK 401 (1129)
Q Consensus 366 ~~~p~l~~~G~~~~~~~--~~~~~~~~~~a~~~~~~~~ 401 (1129)
++.|++|.+|.....+- ..+..+|+.+|+.+..++.
T Consensus 615 Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 615 TSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred cCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 67899999998864432 2344788888887766544
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-20 Score=211.45 Aligned_cols=148 Identities=19% Similarity=0.200 Sum_probs=90.3
Q ss_pred ccccccCCCCCcCcCCCChHHHHHHHH----hcccceecCCCCCcceecccCCC-----C--------CcceEEEEEEcc
Q psy12350 434 YKHLINIDHPSMCIIGIPGDTVVFYMF----DLQDKIRPGRGNPRPSACEADAL-----P--------TNLTRLTYIISS 496 (1129)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~e~~~y~~----~~~~~i~~~~~~~~v~~~~~~~~-----~--------~~~~~~~~v~at 496 (1129)
+.+.+..+|++...++|+|.||.+||+ ++...++|+.+|++|+.....+. . ....+++||+||
T Consensus 76 ~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~ 155 (341)
T PF13434_consen 76 HEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLAT 155 (341)
T ss_dssp HHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE--
T ss_pred HHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECc
Confidence 345566777878889999999999999 55545999877777776543210 0 122346799999
Q ss_pred cCCCCCCCCCCCCCCCcCCcEEecCCCCCCC--CCCCCeEEEEccCcchhhhHHHhhccc--CeEEEEEEecceeeeccc
Q psy12350 497 RNYSNPVYPDFKGKDVCQIPIMHSHEYRTPE--PFAGKRAVVVGSGPSGLDITHDISTEA--TTVSAYLRFDNKTITKRK 572 (1129)
Q Consensus 497 G~~~~p~~p~~~g~~~f~g~v~hs~~~~~~~--~~~~k~v~ViG~g~sa~~~~~~l~~~~--~~v~~~~r~~~~~~~~~~ 572 (1129)
| ..|++|++........+++||++|.... ..++|+|+||||||||+|++.+|++.. .+|+|++|++.+.
T Consensus 156 G--~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~----- 228 (341)
T PF13434_consen 156 G--GQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFF----- 228 (341)
T ss_dssp ----EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-E-----
T ss_pred C--CCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccC-----
Confidence 9 8999998532211236899999996553 577899999999999999999999875 5899999998773
Q ss_pred cccCCCCCCCCCCccc
Q psy12350 573 KFDKGRNYNHPIYPEF 588 (1129)
Q Consensus 573 ~~~~~~~~~~p~~p~~ 588 (1129)
+.+.+++.++.|.|++
T Consensus 229 ~~d~s~f~ne~f~P~~ 244 (341)
T PF13434_consen 229 PMDDSPFVNEIFSPEY 244 (341)
T ss_dssp B----CCHHGGGSHHH
T ss_pred CCccccchhhhcCchh
Confidence 3334444444444443
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-17 Score=177.79 Aligned_cols=250 Identities=17% Similarity=0.188 Sum_probs=165.3
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcc-eEEEcccCCcCccccc----CCCCCCCCCCCCccccccCcccccc-----
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFT-CTTFEQADNIGGTWLY----TEHIGCDQYGLPVHSSMYKSLKTNL----- 807 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~-v~v~E~~~~~GG~w~~----~~~~g~~~~g~p~~~~~y~~~~~~~----- 807 (1129)
...+++|||+||+||+||.++.+.+ .+ ++|+|+ ...||.-.. ..|||... +++-.. +.+.+..+.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~--l~~~li~~~-~~~gg~~~~~~~venypg~~~-~~~g~~-L~~~~~~~a~~~~~ 76 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAG--LKVVLILEG-GEPGGQLTKTTDVENYPGFPG-GILGPE-LMEQMKEQAEKFGV 76 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcC--CCcEEEEec-CCcCCccccceeecCCCCCcc-CCchHH-HHHHHHHHHhhcCe
Confidence 3457899999999999999999999 88 666665 567764332 23455322 111000 000000000
Q ss_pred ------cccccccc-CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCcc
Q psy12350 808 ------PKDLMELC-GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQS 880 (1129)
Q Consensus 808 ------~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~S 880 (1129)
......-. .|....+ ...|..+..++++|..++.|.+||.++|.|+-+|.+..++. .+++|+|+|||||+|
T Consensus 77 ~~~~~~v~~v~~~~~~F~v~t~-~~~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~s 154 (305)
T COG0492 77 EIVEDEVEKVELEGGPFKVKTD-KGTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDS 154 (305)
T ss_pred EEEEEEEEEEeecCceEEEEEC-CCeEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCHH
Confidence 00000001 1222222 22256666777799999999999877899999999999988 899999999999999
Q ss_pred HHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC---CcEEecCC
Q psy12350 881 GLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP---TGVRFQDG 955 (1129)
Q Consensus 881 g~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~---~~V~~~dG 955 (1129)
|+|-|..|++.+++||++.|....... +.+.+. +.. ..+|.++.+ |.++.+ .+|.+.+.
T Consensus 155 Ave~Al~L~~~a~~Vtlv~r~~~~ra~-~~~~~~-------------l~~--~~~i~~~~~~~i~ei~G~~v~~v~l~~~ 218 (305)
T COG0492 155 AVEEALYLSKIAKKVTLVHRRDEFRAE-EILVER-------------LKK--NVKIEVLTNTVVKEILGDDVEGVVLKNV 218 (305)
T ss_pred HHHHHHHHHHhcCeEEEEecCcccCcC-HHHHHH-------------HHh--cCCeEEEeCCceeEEecCccceEEEEec
Confidence 999999999999999999886532220 000000 000 114555544 888877 46788764
Q ss_pred --c--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc
Q psy12350 956 --S--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT 1013 (1129)
Q Consensus 956 --~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~ 1013 (1129)
+ ++++|.|+.+.|+.|+..|+.. .++ +++++....... ..+++|+||++|++...
T Consensus 219 ~~~~~~~~~~gvf~~iG~~p~~~~~~~-~~~-~~~~g~I~v~~~-~~TsvpGifAaGDv~~~ 277 (305)
T COG0492 219 KGEEKELPVDGVFIAIGHLPNTELLKG-LGV-LDENGYIVVDEE-METSVPGIFAAGDVADK 277 (305)
T ss_pred CCceEEEEeceEEEecCCCCchHHHhh-ccc-cCCCCcEEcCCC-cccCCCCEEEeEeeccC
Confidence 3 4699999999999999887765 334 444444333333 67799999999998653
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.7e-18 Score=194.92 Aligned_cols=268 Identities=15% Similarity=0.214 Sum_probs=162.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
.+++|||+|++|+.+|+.|++.+++.+|+|+++++..- |++ +... +.+. .......+.........+-.+..+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~----y~~-~~l~-~~~~-~~~~~~~~~~~~~~~~~~~~gv~~ 75 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE----YNK-PDLS-HVFS-QGQRADDLTRQSAGEFAEQFNLRL 75 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC----cCc-CcCc-HHHh-CCCCHHHhhcCCHHHHHHhCCCEE
Confidence 36899999999999999999988889999999876310 110 0000 0000 000000000000000000000000
Q ss_pred ---------CCC------CCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCC-----CCCCCCeEEEEcCCc
Q psy12350 820 ---------KGN------ADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTP-----EPFAGKQAVVVGSGQ 879 (1129)
Q Consensus 820 ---------~~~------~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~-----~~~~gk~VvVVG~G~ 879 (1129)
..+ ....+....-++++|+.|..|++||.+. +++.....+. ....+|+|+|||+|.
T Consensus 76 ~~~~~V~~id~~~~~v~~~~~~~~yd~LVlATG~~~~~p~i~G~~~----v~~~~~~~~~~~~~~~~~~~~~vvViGgG~ 151 (377)
T PRK04965 76 FPHTWVTDIDAEAQVVKSQGNQWQYDKLVLATGASAFVPPIPGREL----MLTLNSQQEYRAAETQLRDAQRVLVVGGGL 151 (377)
T ss_pred ECCCEEEEEECCCCEEEECCeEEeCCEEEECCCCCCCCCCCCCCce----EEEECCHHHHHHHHHHhhcCCeEEEECCCH
Confidence 000 0112223344455999999999999753 3333332211 112579999999999
Q ss_pred cHHHHHHHHHhcCCEEEEEecCCCCccc--hhhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEeCCc----EE
Q psy12350 880 SGLDITLDIATTGKQAVVVGSGQSGLDI--TLDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELTPTG----VR 951 (1129)
Q Consensus 880 Sg~eiA~~la~~~~~V~vv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~~~~----V~ 951 (1129)
+|+|+|..|++.+.+|+++++.+..++. .+.......+ .+. ..+|++.. .+.+++.+. +.
T Consensus 152 ~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~---------~l~---~~gV~i~~~~~v~~i~~~~~~~~v~ 219 (377)
T PRK04965 152 IGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQH---------RLT---EMGVHLLLKSQLQGLEKTDSGIRAT 219 (377)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHH---------HHH---hCCCEEEECCeEEEEEccCCEEEEE
Confidence 9999999999999999999886654321 1111111110 011 12555553 377776532 77
Q ss_pred ecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----chhHHHHHHHHHH
Q psy12350 952 FQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----LLFNLFDLQVRLF 1026 (1129)
Q Consensus 952 ~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----~~~~~~e~qa~~~ 1026 (1129)
+.||+++++|.||+|+|++++..++.. .|+..++. + .+.. .+.++.||||++|++... +.+..+..||+++
T Consensus 220 ~~~g~~i~~D~vI~a~G~~p~~~l~~~-~gl~~~~g-i-~vd~-~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~ 295 (377)
T PRK04965 220 LDSGRSIEVDAVIAAAGLRPNTALARR-AGLAVNRG-I-VVDS-YLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMAL 295 (377)
T ss_pred EcCCcEEECCEEEECcCCCcchHHHHH-CCCCcCCC-E-EECC-CcccCCCCEEEeeecEeECCceeehHHHHHHHHHHH
Confidence 889999999999999999999776543 56666543 2 2222 234589999999998642 2456678999999
Q ss_pred HHHHcCCC
Q psy12350 1027 QQLMQGHI 1034 (1129)
Q Consensus 1027 a~~l~g~~ 1034 (1129)
|+++.|..
T Consensus 296 a~n~~g~~ 303 (377)
T PRK04965 296 AKNLLGQN 303 (377)
T ss_pred HHHhcCCC
Confidence 99999854
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.4e-17 Score=191.53 Aligned_cols=280 Identities=14% Similarity=0.179 Sum_probs=163.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
+.++|+||||||+||+||..|++ .|++|+|||+.+.+||.+.+. ++.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~--~G~~V~i~e~~~~~gG~l~~g------------------------------ip~- 186 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR--AGVQVVVFDRHPEIGGLLTFG------------------------------IPS- 186 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCCceeeec------------------------------Ccc-
Confidence 35799999999999999999999 669999999999999998740 111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
+....++.++..+++.++|+ .+++|++|..- +.+ .. ....|| +||+|
T Consensus 187 ---------~~~~~~~~~~~~~~~~~~Gv--~~~~~~~v~~~-----------~~~---~~---~~~~~D-----~vilA 233 (467)
T TIGR01318 187 ---------FKLDKAVLSRRREIFTAMGI--EFHLNCEVGRD-----------ISL---DD---LLEDYD-----AVFLG 233 (467)
T ss_pred ---------ccCCHHHHHHHHHHHHHCCC--EEECCCEeCCc-----------cCH---HH---HHhcCC-----EEEEE
Confidence 11123456666677788887 78888877320 000 00 112489 99999
Q ss_pred cccCCCC-CccccccchhhhcccccccCCCCCcccccccccc-hhhhcccccccCCCCCCccchhccccccccccccccc
Q psy12350 168 QGHVTLP-SKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSE-KYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE 245 (1129)
Q Consensus 168 tG~~~~p-~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 245 (1129)
|| +.+ ..++|||... . |.+.. .|+.... +....... .....
T Consensus 234 tG--a~~~~~~~i~g~~~---~---------------gV~~a~~~l~~~~---------------~~~~~~~~-~~~~~- 276 (467)
T TIGR01318 234 VG--TYRSMRGGLPGEDA---P---------------GVLQALPFLIANT---------------RQLMGLPE-SPEEP- 276 (467)
T ss_pred eC--CCCCCcCCCCCcCC---C---------------CcEEHHHHHHHHH---------------HHhcCCCc-ccccc-
Confidence 99 443 3355666321 1 11110 0100000 00000000 00000
Q ss_pred ccccceeEeeceeeeecCCCCCCCCcccchhhhcccc-cEEEEccccCCc-cccc---------CCCCeEEcCCceEEcC
Q psy12350 246 FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA-TTVFLSHHSEHV-KKLR---------FPNNVVKKPDIAELTP 314 (1129)
Q Consensus 246 ~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~-~~V~lv~r~~~~-~~~~---------~~~~i~~~~~v~~~~~ 314 (1129)
.....|++++| ||+|++|+|.|..+.+.| ++||+++|++.. ++.. ..-++.....+.++.+
T Consensus 277 ----~~~~~gk~VvV----IGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~~~~~~~GV~~~~~~~~~~i~~ 348 (467)
T TIGR01318 277 ----LIDVEGKRVVV----LGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREVANAREEGVEFLFNVQPVYIEC 348 (467)
T ss_pred ----ccccCCCEEEE----ECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHHHHHHhcCCEEEecCCcEEEEE
Confidence 00012344444 899999999999988887 589999987642 1110 1113455666777742
Q ss_pred --Cc----eEEc---------C---------C--CEeecCEEEEcccccccC-CCCCCCCCeEeecCcccc---cccccc
Q psy12350 315 --TG----VRFQ---------D---------G--SYEQVDIILYCTGYTYRY-PFLHESCGIKVVNKNVQP---LYKHLI 364 (1129)
Q Consensus 315 --~~----v~~~---------d---------g--~~~~~D~VI~atG~~~~~-~~l~~~~~~~~~~~~~~~---l~~~~~ 364 (1129)
++ |.+. + | .++++|.||+|+|++++. +++. ..++.++++..+. .|+..+
T Consensus 349 ~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~-~~gl~~~~~g~i~vd~~~~~~~ 427 (467)
T TIGR01318 349 DEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLA-GHGITLDSWGRIITGDVSYLPY 427 (467)
T ss_pred CCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCcccccc-ccCccCCCCCCEEeCCccccCc
Confidence 22 2331 1 2 257999999999999984 4554 3445554433221 122233
Q ss_pred cCCCCCeEEecccccccc--cccccceeeehhhcccc
Q psy12350 365 NIEHPSMCIIGYTYRYPF--LHESCGIKVVNKNVQPL 399 (1129)
Q Consensus 365 ~~~~p~l~~~G~~~~~~~--~~~~~~~~~~a~~~~~~ 399 (1129)
.++.|++|.+|.....+- ..+..+|+.+|.++...
T Consensus 428 ~T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~~~ 464 (467)
T TIGR01318 428 QTTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGILDW 464 (467)
T ss_pred cCCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHHHH
Confidence 467899999998864332 23347777777766543
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-17 Score=194.53 Aligned_cols=274 Identities=12% Similarity=0.080 Sum_probs=162.1
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCC-CCCccc-------cccCcccccc--c
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQY-GLPVHS-------SMYKSLKTNL--P 808 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~-g~p~~~-------~~y~~~~~~~--~ 808 (1129)
...++|||+|++|+.+|..|++.+++.+|+++++++... |++.+-...+ .-+... ..|....... .
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~----y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g 78 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP----YERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSG 78 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC----CCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcC
Confidence 346899999999999999999999777999999986542 1111100000 000000 0000000000 0
Q ss_pred cccccc--cCCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCC-----CCCCCeEEEEcCCccH
Q psy12350 809 KDLMEL--CGYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPE-----PFAGKQAVVVGSGQSG 881 (1129)
Q Consensus 809 ~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~-----~~~gk~VvVVG~G~Sg 881 (1129)
...... ............+....-++.+|+.|+.|++++... ..++...+..+.. -..+|+|+|||+|.+|
T Consensus 79 ~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~--~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig 156 (396)
T PRK09754 79 VTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALG--ERCFTLRHAGDAARLREVLQPERSVVIVGAGTIG 156 (396)
T ss_pred CEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCC--CCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHH
Confidence 000000 000000000111223334455999998887766432 2344332222211 1247999999999999
Q ss_pred HHHHHHHHhcCCEEEEEecCCCCccc--hhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc---EEecC
Q psy12350 882 LDITLDIATTGKQAVVVGSGQSGLDI--TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG---VRFQD 954 (1129)
Q Consensus 882 ~eiA~~la~~~~~V~vv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~---V~~~d 954 (1129)
+|+|..|++.|.+||++++.+..+.. .+.......+.+ ...+|+++.+ +++++.++ +.+.|
T Consensus 157 ~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l------------~~~GV~i~~~~~V~~i~~~~~~~v~l~~ 224 (396)
T PRK09754 157 LELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRH------------QQAGVRILLNNAIEHVVDGEKVELTLQS 224 (396)
T ss_pred HHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHH------------HHCCCEEEeCCeeEEEEcCCEEEEEECC
Confidence 99999999999999999886654421 111111111100 0125666543 77776432 67789
Q ss_pred CcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc----------chhHHHHHHHH
Q psy12350 955 GSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT----------LLFNLFDLQVR 1024 (1129)
Q Consensus 955 G~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~----------~~~~~~e~qa~ 1024 (1129)
|+++++|.||+|+|.+|+..++.. .|+..++ ++ .+..+ +.++.||||++|++... ..++.+..||+
T Consensus 225 g~~i~aD~Vv~a~G~~pn~~l~~~-~gl~~~~-gi-~vd~~-~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~ 300 (396)
T PRK09754 225 GETLQADVVIYGIGISANDQLARE-ANLDTAN-GI-VIDEA-CRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQ 300 (396)
T ss_pred CCEEECCEEEECCCCChhhHHHHh-cCCCcCC-CE-EECCC-CccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHH
Confidence 999999999999999999766543 5666543 22 22222 34589999999998631 24688999999
Q ss_pred HHHHHHcCCC
Q psy12350 1025 LFQQLMQGHI 1034 (1129)
Q Consensus 1025 ~~a~~l~g~~ 1034 (1129)
.+|+++.|..
T Consensus 301 ~aa~ni~g~~ 310 (396)
T PRK09754 301 IAAAAMLGLP 310 (396)
T ss_pred HHHHHhcCCC
Confidence 9999998754
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-17 Score=207.12 Aligned_cols=270 Identities=17% Similarity=0.189 Sum_probs=168.3
Q ss_pred CccccccCCchhhHHHHHHhhC--CCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCcccccccccc-----cc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAG--NGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDL-----ME 813 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g--~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~-----~~ 813 (1129)
.++|||+|++|+.+|.+|++.+ ..++|+||++++.++ |++- ....+ + .....+.+..+..... .-
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~----Y~r~-~L~~~-~--~~~~~~~l~~~~~~~~~~~gI~~ 76 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA----YDRV-HLSSY-F--SHHTAEELSLVREGFYEKHGIKV 76 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc----ccCC-cchHh-H--cCCCHHHccCCCHHHHHhCCCEE
Confidence 6899999999999999998764 347999999988653 1110 00000 0 0000001111100000 00
Q ss_pred ccCC---CCCC-------CCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCC-----CCCCeEEEEcCC
Q psy12350 814 LCGY---GHKG-------NADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEP-----FAGKQAVVVGSG 878 (1129)
Q Consensus 814 ~~~~---~~~~-------~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~-----~~gk~VvVVG~G 878 (1129)
+.+. .... .....+....-|+++|+.|++|++||.+. ..++......+... ..+|+++|||+|
T Consensus 77 ~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~--~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG 154 (847)
T PRK14989 77 LVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSET--QDCFVYRTIEDLNAIEACARRSKRGAVVGGG 154 (847)
T ss_pred EcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCC--CCeEEECCHHHHHHHHHHHhcCCeEEEECCC
Confidence 0000 0000 00112233344555999999999999874 22333333222211 257899999999
Q ss_pred ccHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC------
Q psy12350 879 QSGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT------ 948 (1129)
Q Consensus 879 ~Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~------ 948 (1129)
.+|+|+|..|++.|.+|+++++.+..++ +.+.......+.+. ..+|+++.+ ++++.++
T Consensus 155 ~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~------------~~GV~v~~~~~v~~I~~~~~~~~~ 222 (847)
T PRK14989 155 LLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIE------------SMGVRVHTSKNTLEIVQEGVEARK 222 (847)
T ss_pred HHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHH------------HCCCEEEcCCeEEEEEecCCCceE
Confidence 9999999999999999999998765543 22222222221111 125666654 7777532
Q ss_pred cEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----chhHHHHHHH
Q psy12350 949 GVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----LLFNLFDLQV 1023 (1129)
Q Consensus 949 ~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----~~~~~~e~qa 1023 (1129)
.+.+.||+++++|.||+|+|++|+..++. ..|+++++++...+..+ +.++.||||++|++... ..+..+..||
T Consensus 223 ~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~-~~Gl~~~~~G~I~VD~~-l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a 300 (847)
T PRK14989 223 TMRFADGSELEVDFIVFSTGIRPQDKLAT-QCGLAVAPRGGIVINDS-CQTSDPDIYAIGECASWNNRVFGLVAPGYKMA 300 (847)
T ss_pred EEEECCCCEEEcCEEEECCCcccCchHHh-hcCccCCCCCcEEECCC-CcCCCCCEEEeecceeEcCcccccHHHHHHHH
Confidence 37789999999999999999999977554 47777776544444333 34589999999998743 2457788999
Q ss_pred HHHHHHHcCCC
Q psy12350 1024 RLFQQLMQGHI 1034 (1129)
Q Consensus 1024 ~~~a~~l~g~~ 1034 (1129)
+.+|..|.|..
T Consensus 301 ~vaa~~i~g~~ 311 (847)
T PRK14989 301 QVAVDHLLGSE 311 (847)
T ss_pred HHHHHHhcCCC
Confidence 99999998854
|
|
| >KOG2495|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-17 Score=177.41 Aligned_cols=298 Identities=14% Similarity=0.171 Sum_probs=183.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
++++|+|+|+|++|.+.++.|-. ..++|+|+.-++.. . +...+|.....--
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldt--s~YdV~vVSPRnyF----l---------------------FTPLLpS~~vGTv-- 104 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDT--SLYDVTVVSPRNYF----L---------------------FTPLLPSTTVGTV-- 104 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccc--cccceEEeccccce----E---------------------EeeccCCccccce--
Confidence 46899999999999999999998 77999999876642 1 1112222211111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCc---cceEEecceeeeEE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDT---VGFYLFDLQVRFFL 164 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~l 164 (1129)
....+.+=++..+.+-+-..+ .+..+-..|++ +...++.+.+..+. .....|| ||
T Consensus 105 -----------e~rSIvEPIr~i~r~k~~~~~-y~eAec~~iDp-----~~k~V~~~s~t~~~~~~e~~i~YD-----yL 162 (491)
T KOG2495|consen 105 -----------ELRSIVEPIRAIARKKNGEVK-YLEAECTKIDP-----DNKKVHCRSLTADSSDKEFVIGYD-----YL 162 (491)
T ss_pred -----------eehhhhhhHHHHhhccCCCce-EEecccEeecc-----cccEEEEeeeccCCCcceeeeccc-----EE
Confidence 111233334444444322111 22334445554 44556655544332 3456799 99
Q ss_pred EEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccc
Q psy12350 165 QLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFT 244 (1129)
Q Consensus 165 vvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 244 (1129)
|+|+| +.++.+.+||-.++..- .+...+|.+|+...... ++++.. ..+.
T Consensus 163 ViA~G--A~~~TFgipGV~e~~~F----LKEv~dAqeIR~~~~~~-----------------------le~a~~--~~l~ 211 (491)
T KOG2495|consen 163 VIAVG--AEPNTFGIPGVEENAHF----LKEVEDAQEIRRKVIDN-----------------------LEKAEL--PGLS 211 (491)
T ss_pred EEecc--CCCCCCCCCchhhchhh----hhhhhHHHHHHHHHHHH-----------------------HHHhhc--CCCC
Confidence 99999 88999999884332111 11233343333221111 111111 1111
Q ss_pred cccccceeEeeceeeeecCCCCCCCCcccchhhhcccc--------------cEEEEccccCCcccccC-----------
Q psy12350 245 EFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA--------------TTVFLSHHSEHVKKLRF----------- 299 (1129)
Q Consensus 245 ~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~--------------~~V~lv~r~~~~~~~~~----------- 299 (1129)
+...++.+ .++| ||||++|+|+|.+|+..- -+|||++-.+.+++..+
T Consensus 212 ~eerkRlL----h~VV----VGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f 283 (491)
T KOG2495|consen 212 DEERKRLL----HFVV----VGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQF 283 (491)
T ss_pred hHHhhheE----EEEE----ECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHh
Confidence 11112222 2344 899999999999987643 25999999887765422
Q ss_pred ---CCCeEEcCCceEEcCCceEEcCC----CEeecCEEEEcccccccCCC-------CCCCC--CeEeecCccccccccc
Q psy12350 300 ---PNNVVKKPDIAELTPTGVRFQDG----SYEQVDIILYCTGYTYRYPF-------LHESC--GIKVVNKNVQPLYKHL 363 (1129)
Q Consensus 300 ---~~~i~~~~~v~~~~~~~v~~~dg----~~~~~D~VI~atG~~~~~~~-------l~~~~--~~~~~~~~~~~l~~~~ 363 (1129)
.-++..++.|+.++++.++..++ ++++.-.++|+||-.+. |+ +++.. ++.+|+-..++..+++
T Consensus 284 ~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nv 362 (491)
T KOG2495|consen 284 VRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNV 362 (491)
T ss_pred hhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcCCccCceeeeeeceeeccCcCce
Confidence 12566677799999888776654 46799999999999876 33 23334 5777777778888888
Q ss_pred ccCCCCCeEEecccccccccccccceeeehhhcccc
Q psy12350 364 INIEHPSMCIIGYTYRYPFLHESCGIKVVNKNVQPL 399 (1129)
Q Consensus 364 ~~~~~p~l~~~G~~~~~~~~~~~~~~~~~a~~~~~~ 399 (1129)
|+++|.+ .+-|++.++++|+ |||.++|+++...
T Consensus 363 fAiGDca-~~~~~~~tAQVA~--QqG~yLAk~fn~m 395 (491)
T KOG2495|consen 363 FAIGDCA-DQRGLKPTAQVAE--QQGAYLAKNFNKM 395 (491)
T ss_pred EEecccc-ccccCccHHHHHH--HHHHHHHHHHHHH
Confidence 8888866 5667777888888 9987777665543
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-17 Score=192.67 Aligned_cols=282 Identities=18% Similarity=0.205 Sum_probs=163.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+||||||||++||..|++ .|++|+|||+.+.+||.+.|. ++.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~--~g~~V~v~e~~~~~gG~l~~g------------------------------ip~-- 188 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNR--AGHTVTVFEREDRCGGLLMYG------------------------------IPN-- 188 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCCCceeecc------------------------------CCC--
Confidence 3799999999999999999999 669999999999999988741 000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
+....++..+..+++++.|+ .+++++.|.. +. .. +.....|| +||+||
T Consensus 189 --------~~~~~~~~~~~~~~~~~~Gv--~~~~~~~v~~-~~---------------~~-~~~~~~~d-----~VilAt 236 (485)
T TIGR01317 189 --------MKLDKAIVDRRIDLLSAEGI--DFVTNTEIGV-DI---------------SA-DELKEQFD-----AVVLAG 236 (485)
T ss_pred --------ccCCHHHHHHHHHHHHhCCC--EEECCCEeCC-cc---------------CH-HHHHhhCC-----EEEEcc
Confidence 11112344444455666776 7788877631 00 00 01123488 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccc-hhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSE-KYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|.. .|..+++||... +| .+.. .++..... . .....+...
T Consensus 237 Ga~-~~~~l~i~G~~~---~g---------------V~~~~~~l~~~~~-------------------~-~~~~~~~~~- 276 (485)
T TIGR01317 237 GAT-KPRDLPIPGREL---KG---------------IHYAMEFLPSATK-------------------A-LLGKDFKDI- 276 (485)
T ss_pred CCC-CCCcCCCCCcCC---CC---------------cEeHHHHHHHHhh-------------------h-hcccccccc-
Confidence 932 377777877321 11 1111 11100000 0 000000000
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhccc-ccEEEEccccCCccccc------------------CCC-------
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTE-ATTVFLSHHSEHVKKLR------------------FPN------- 301 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~-~~~V~lv~r~~~~~~~~------------------~~~------- 301 (1129)
......||+|+| ||||++|+|+|..+.+. +++|+++++.+..+... ..+
T Consensus 277 -~~~~~~gk~VvV----iGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv 351 (485)
T TIGR01317 277 -IFIKAKGKKVVV----IGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGR 351 (485)
T ss_pred -ccccCCCCEEEE----ECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCc
Confidence 000112444455 89999999997765555 57899998765432110 000
Q ss_pred -CeEEcCCceEEcCC---c---eEE--------cCCC-----------EeecCEEEEccccc-ccCCCCCCCCCeEeecC
Q psy12350 302 -NVVKKPDIAELTPT---G---VRF--------QDGS-----------YEQVDIILYCTGYT-YRYPFLHESCGIKVVNK 354 (1129)
Q Consensus 302 -~i~~~~~v~~~~~~---~---v~~--------~dg~-----------~~~~D~VI~atG~~-~~~~~l~~~~~~~~~~~ 354 (1129)
.+.....+.++.++ . |.+ ++|. ++++|.||+|+|+. ++.++++ ..++..+.+
T Consensus 352 ~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~-~~gl~~~~~ 430 (485)
T TIGR01317 352 DPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLD-DFGVKKTRR 430 (485)
T ss_pred cceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCcccccc-ccCcccCCC
Confidence 11234445555431 1 221 1332 57999999999996 7788876 345655444
Q ss_pred cccccccccccCCCCCeEEeccccccc--ccccccceeeehhhccccccc
Q psy12350 355 NVQPLYKHLINIEHPSMCIIGYTYRYP--FLHESCGIKVVNKNVQPLYKH 402 (1129)
Q Consensus 355 ~~~~l~~~~~~~~~p~l~~~G~~~~~~--~~~~~~~~~~~a~~~~~~~~~ 402 (1129)
..+........++.|++|.+|.....+ ...+..+++.+|.++..++.+
T Consensus 431 G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 431 GNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred CCEEecCCCceECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 433222222346789999999875432 223448888888888776655
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.4e-17 Score=190.99 Aligned_cols=266 Identities=17% Similarity=0.175 Sum_probs=157.0
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccc-cCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMEL-CGY 817 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~-~~~ 817 (1129)
..+++|||+|++|+++|..|.+.| ++|+|||+++.+||++.+.. +. +..+ ............+.-..+ .+.
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G--~~V~vie~~~~~GG~l~~gi-p~---~~~~--~~~~~~~~~~l~~~gv~~~~~~ 204 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAG--HSVTVFEALHKPGGVVTYGI-PE---FRLP--KEIVVTEIKTLKKLGVTFRMNF 204 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCcEeeecC-CC---ccCC--HHHHHHHHHHHHhCCcEEEeCC
Confidence 346899999999999999999999 99999999999999887531 10 0000 000000000000000000 000
Q ss_pred CCCCC-CCC--CCCChhhhhhccC-CCCCCCCCCCCCCCCcEEeeccCCC--------------CCCCCCCeEEEEcCCc
Q psy12350 818 GHKGN-ADK--SYIGAKDVLENYN-HPIYPEFKGKDMCQIPILHSRDYRT--------------PEPFAGKQAVVVGSGQ 879 (1129)
Q Consensus 818 ~~~~~-~~~--~~~~~~~v~~~~~-~P~~P~i~G~~~f~g~~~hs~~~~~--------------~~~~~gk~VvVVG~G~ 879 (1129)
..... ... .......++.+|+ .|+.|++||.+. .| ++++.++.. .....||+|+|||+|+
T Consensus 205 ~v~~~v~~~~~~~~yd~viiAtGa~~p~~~~ipG~~~-~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~ 282 (449)
T TIGR01316 205 LVGKTATLEELFSQYDAVFIGTGAGLPKLMNIPGEEL-CG-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGN 282 (449)
T ss_pred ccCCcCCHHHHHhhCCEEEEeCCCCCCCcCCCCCCCC-CC-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCH
Confidence 00000 000 0001222334887 799999999763 22 555443311 1124689999999999
Q ss_pred cHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC--C----cEE
Q psy12350 880 SGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP--T----GVR 951 (1129)
Q Consensus 880 Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~----~V~ 951 (1129)
+|+|+|..+++.|++||++.+.... .+..... .+......+|+++.. +.++.+ + +|+
T Consensus 283 ~a~d~A~~l~~~G~~Vtlv~~~~~~-~~~~~~~--------------~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~ 347 (449)
T TIGR01316 283 TAVDSARTALRLGAEVHCLYRRTRE-DMTARVE--------------EIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVK 347 (449)
T ss_pred HHHHHHHHHHHcCCEEEEEeecCcc-cCCCCHH--------------HHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEE
Confidence 9999999999999999999875321 1100000 000000124444322 444421 1 122
Q ss_pred ec---------CC-----------cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccc
Q psy12350 952 FQ---------DG-----------SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPR 1011 (1129)
Q Consensus 952 ~~---------dG-----------~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~ 1011 (1129)
+. +| +++++|.||+|+|+.++..++.. .|+.+++++...+.. .+.++.|+||++|++.
T Consensus 348 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~-~gl~~~~~G~i~vd~-~~~Ts~~~VfA~GD~~ 425 (449)
T TIGR01316 348 FRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAET-TRLKTSERGTIVVDE-DQRTSIPGVFAGGDII 425 (449)
T ss_pred EEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhc-cCcccCCCCeEEeCC-CCccCCCCEEEecCCC
Confidence 21 22 25899999999999999776654 567766544333322 2456899999999987
Q ss_pred cc-chhHHHHHHHHHHHHHHc
Q psy12350 1012 HT-LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1012 ~~-~~~~~~e~qa~~~a~~l~ 1031 (1129)
.+ .....+..|++.+|..+.
T Consensus 426 ~g~~~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 426 LGAATVIRAMGQGKRAAKSIN 446 (449)
T ss_pred CCcHHHHHHHHHHHHHHHHHH
Confidence 54 356788999999998774
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >KOG1335|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-17 Score=173.72 Aligned_cols=270 Identities=18% Similarity=0.256 Sum_probs=169.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccc------cc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKD------LM 812 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~------~~ 812 (1129)
..+++|||+||.|..||.+..+.| ++.+|+|++..+||+|.. .|| +|.+..++.+......+. -.
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlG--lkTacvEkr~~LGGTcLn---vGc----IPSKALL~nSh~yh~~q~~~~~~rGi 109 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLG--LKTACVEKRGTLGGTCLN---VGC----IPSKALLNNSHLYHEAQHEDFASRGI 109 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhc--ceeEEEeccCccCceeee---ccc----cccHHHhhhhHHHHHHhhhHHHhcCc
Confidence 468899999999999999999999 999999999999999984 466 444333332211111000 00
Q ss_pred cccCCC------------------------CCCC------CCCCCCChh-----------hhhh-------ccCCCCCCC
Q psy12350 813 ELCGYG------------------------HKGN------ADKSYIGAK-----------DVLE-------NYNHPIYPE 844 (1129)
Q Consensus 813 ~~~~~~------------------------~~~~------~~~~~~~~~-----------~v~~-------~~~~P~~P~ 844 (1129)
..+... |..+ ....|.... ++.+ +||. +++
T Consensus 110 ~vs~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSe--V~~ 187 (506)
T KOG1335|consen 110 DVSSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSE--VTP 187 (506)
T ss_pred cccceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCc--cCC
Confidence 000000 0000 000011000 0110 6662 456
Q ss_pred CCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCc-cchhhhhccccEEEEecC
Q psy12350 845 FKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGL-DITLDIATRASTVFLSHH 923 (1129)
Q Consensus 845 i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~-~~~~~~~~~~~~~~~~~~ 923 (1129)
+||++--..+++.|..-... +...|+++|||+|.+|+|++.-..++|++||+++..+... .|+..+....++++...
T Consensus 188 ~PGI~IDekkIVSStgALsL-~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQ- 265 (506)
T KOG1335|consen 188 FPGITIDEKKIVSSTGALSL-KEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQ- 265 (506)
T ss_pred CCCeEecCceEEecCCccch-hhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhc-
Confidence 77765322344444433333 3458999999999999999999999999999998755433 23333333333322221
Q ss_pred CccccccCCCCCeEE--cCCeeEEeCCc-----EEec---CCc--EeeccEEEEccCccCcCCCCC-CCCCeeecCCccc
Q psy12350 924 SERVTSLCLPNNVVL--KPDVAELTPTG-----VRFQ---DGS--YEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQ 990 (1129)
Q Consensus 924 ~~~~~~~~~~~~V~~--~~~i~~v~~~~-----V~~~---dG~--~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~ 990 (1129)
+++. .+.+...+.++ |++. +|+ +++||++++|+|++|-+.-|. +..|++.|++...
T Consensus 266 -----------gikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv 334 (506)
T KOG1335|consen 266 -----------GIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRV 334 (506)
T ss_pred -----------CceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccce
Confidence 2333 23354444322 3332 333 579999999999999766665 4478888766554
Q ss_pred ccccceeecCCCCcEEEccccccchh-HHHHHHHHHHHHHHcCC
Q psy12350 991 PLYKHTINIEHPTMFILGVPRHTLLF-NLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 991 ~ly~~~~~~~~p~l~~iG~~~~~~~~-~~~e~qa~~~a~~l~g~ 1033 (1129)
++ ..-|.+.+||||.||++..++++ +-+|-|+..+...+.|.
T Consensus 335 ~v-~~~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~ 377 (506)
T KOG1335|consen 335 IV-NTRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGG 377 (506)
T ss_pred ec-cccccccCCceEEecccCCcchhhhhhhhhchhheeeeccc
Confidence 43 34467799999999999877654 89999999999998875
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.5e-17 Score=193.01 Aligned_cols=274 Identities=19% Similarity=0.263 Sum_probs=166.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcc------cCCcCcccccCCCCCCCC--------------------CCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQ------ADNIGGTWLYTEHIGCDQ--------------------YGL 793 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~------~~~~GG~w~~~~~~g~~~--------------------~g~ 793 (1129)
.+++|||+|++|+++|.++.+.| .+|+|+|+ ...+||+|.. .||-+ +|+
T Consensus 5 ~DviIIG~G~aG~~aA~~~~~~g--~~v~lie~~~~~~g~~~~Gg~c~n---~gc~P~k~l~~~a~~~~~~~~~~~~~G~ 79 (475)
T PRK06327 5 FDVVVIGAGPGGYVAAIRAAQLG--LKVACIEAWKNPKGKPALGGTCLN---VGCIPSKALLASSEEFENAGHHFADHGI 79 (475)
T ss_pred eeEEEECCCHHHHHHHHHHHhCC--CeEEEEecccCCCCCCCcCCcccc---ccccHHHHHHHHHHHHHHHHhhHHhcCc
Confidence 47899999999999999999999 99999998 4679999973 34411 011
Q ss_pred Ccccc--ccCccccc----------cccccccccCC-----------------CCC--CCCCCCCCChhhhhhccCCCCC
Q psy12350 794 PVHSS--MYKSLKTN----------LPKDLMELCGY-----------------GHK--GNADKSYIGAKDVLENYNHPIY 842 (1129)
Q Consensus 794 p~~~~--~y~~~~~~----------~~~~~~~~~~~-----------------~~~--~~~~~~~~~~~~v~~~~~~P~~ 842 (1129)
+.... .|+.+... ......+.... ... ......+..+.-|+.+|+.|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~ 159 (475)
T PRK06327 80 HVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRH 159 (475)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCC
Confidence 10000 00000000 00000000000 000 0000112223344459999975
Q ss_pred CCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEe
Q psy12350 843 PEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLS 921 (1129)
Q Consensus 843 P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~ 921 (1129)
|+ +.+ +.+..+++++........+|+|+|||+|.+|+|+|..+++.+.+||++++.+..++. .+.+.....+.
T Consensus 160 ~p--~~~-~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~--- 233 (475)
T PRK06327 160 LP--GVP-FDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKA--- 233 (475)
T ss_pred CC--CCC-CCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHH---
Confidence 53 322 233433333321112234799999999999999999999999999999987654432 11111111110
Q ss_pred cCCccccccCCCCCeEEcCC--eeEEeCC--c--EEecC--C--cEeeccEEEEccCccCcCCCCC-CCCCeeecCCccc
Q psy12350 922 HHSERVTSLCLPNNVVLKPD--VAELTPT--G--VRFQD--G--SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQ 990 (1129)
Q Consensus 922 ~~~~~~~~~~~~~~V~~~~~--i~~v~~~--~--V~~~d--G--~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~ 990 (1129)
+. ..+|++..+ |.+++.+ + +.+.+ | +++++|.||+|+|++|+.++|. +.+|+++++++..
T Consensus 234 ------l~---~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i 304 (475)
T PRK06327 234 ------FT---KQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFI 304 (475)
T ss_pred ------HH---HcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeE
Confidence 10 125666544 7777543 3 44444 3 4689999999999999988654 3467777766544
Q ss_pred ccccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCCC
Q psy12350 991 PLYKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 991 ~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
.+... +.++.||||++|++... ...+.+..|++.+|..+.|..
T Consensus 305 ~vd~~-~~Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~ 348 (475)
T PRK06327 305 PVDDH-CRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQK 348 (475)
T ss_pred eECCC-CccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCC
Confidence 44433 34589999999998754 356889999999999998743
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-17 Score=194.66 Aligned_cols=267 Identities=18% Similarity=0.254 Sum_probs=164.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcccc-----ccCcc-----------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSS-----MYKSL----------- 803 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~-----~y~~~----------- 803 (1129)
.+++|||+||+|+.+|..|.+.| .+|+|+|+. .+||+|.. .|| +|.+.. .+..+
T Consensus 5 ydvvVIG~GpaG~~aA~~aa~~G--~~v~lie~~-~~GG~c~~---~gc----iPsk~l~~~a~~~~~~~~~~~~g~~~~ 74 (472)
T PRK05976 5 YDLVIIGGGPGGYVAAIRAGQLG--LKTALVEKG-KLGGTCLH---KGC----IPSKALLHSAEVFQTAKKASPFGISVS 74 (472)
T ss_pred ccEEEECCCHHHHHHHHHHHhCC--CeEEEEEcc-CCCcceEc---CCc----CchHHHHHHHHHHHHHHHHHhcCccCC
Confidence 47899999999999999999999 999999985 79999984 354 221110 00000
Q ss_pred --ccccc-----------------cccccccCCCC---------CC-------------CCC--CCCCChhhhhhccCCC
Q psy12350 804 --KTNLP-----------------KDLMELCGYGH---------KG-------------NAD--KSYIGAKDVLENYNHP 840 (1129)
Q Consensus 804 --~~~~~-----------------~~~~~~~~~~~---------~~-------------~~~--~~~~~~~~v~~~~~~P 840 (1129)
..+.. ....+..+..+ +. ... ..+....-|+++|+.|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p 154 (472)
T PRK05976 75 GPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRP 154 (472)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCC
Confidence 00000 00000000000 00 000 0122233344599999
Q ss_pred CCCCCCCCCCCCCc-EEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccch-hhhhccccEE
Q psy12350 841 IYPEFKGKDMCQIP-ILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDIT-LDIATRASTV 918 (1129)
Q Consensus 841 ~~P~i~G~~~f~g~-~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~-~~~~~~~~~~ 918 (1129)
+.| ||.+ +.+. ++++.+...... .+++|+|||+|.+|+|+|..|++.|.+|+++++.+..++.. +.+.....+.
T Consensus 155 ~~~--p~~~-~~~~~~~~~~~~~~~~~-~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~ 230 (472)
T PRK05976 155 VEL--PGLP-FDGEYVISSDEALSLET-LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARL 230 (472)
T ss_pred CCC--CCCC-CCCceEEcchHhhCccc-cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHH
Confidence 755 3332 2233 555555443332 36999999999999999999999999999999876554321 1111111111
Q ss_pred EEecCCccccccCCCCCeEEcCC--eeEEe---CCcE---EecCCc--EeeccEEEEccCccCcCCCCC-CCCCeeecCC
Q psy12350 919 FLSHHSERVTSLCLPNNVVLKPD--VAELT---PTGV---RFQDGS--YEQVDIILCCTGYSNHYPFLH-ESCGIKVVNK 987 (1129)
Q Consensus 919 ~~~~~~~~~~~~~~~~~V~~~~~--i~~v~---~~~V---~~~dG~--~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~ 987 (1129)
+. ..+|++..+ +.+++ ++++ .+.+|+ ++++|.||+|+|.+|+.+++. +..++..++.
T Consensus 231 ---------l~---~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g 298 (472)
T PRK05976 231 ---------LK---KLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGG 298 (472)
T ss_pred ---------HH---hcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCC
Confidence 10 125666554 77775 3443 345674 589999999999999987653 2345544332
Q ss_pred cccccccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCCC
Q psy12350 988 NVQPLYKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 988 ~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
. ..+..+ +.++.||||++|++... .....+..||+.++..+.|..
T Consensus 299 ~-i~Vd~~-l~ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~ 344 (472)
T PRK05976 299 F-IQIDDF-CQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKK 344 (472)
T ss_pred E-EEECCC-cccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 2 233332 34578999999998754 356889999999999998753
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-17 Score=206.14 Aligned_cols=275 Identities=15% Similarity=0.206 Sum_probs=163.4
Q ss_pred ccccccCCchhhHHHHHHhhC-CCcceEEEcccCCcCcc-cccCCC-CCCCC-CCCCcc-ccccCccccc--cccccccc
Q psy12350 742 NIVDRHGPGGLTATKRLTEAG-NGFTCTTFEQADNIGGT-WLYTEH-IGCDQ-YGLPVH-SSMYKSLKTN--LPKDLMEL 814 (1129)
Q Consensus 742 ~~iiG~G~~gl~~a~~l~~~g-~~~~v~v~E~~~~~GG~-w~~~~~-~g~~~-~g~p~~-~~~y~~~~~~--~~~~~~~~ 814 (1129)
++|||+|++|+.+|.+|++.+ ..++|+|||+++.++-. .....+ .|... ..+... ...|+....+ ........
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 479999999999999998875 35799999998876411 000000 00000 000000 0001000000 00000000
Q ss_pred c--CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCC-----CCCCCeEEEEcCCccHHHHHHH
Q psy12350 815 C--GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPE-----PFAGKQAVVVGSGQSGLDITLD 887 (1129)
Q Consensus 815 ~--~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~-----~~~gk~VvVVG~G~Sg~eiA~~ 887 (1129)
. ...........+....-++++|+.|+.|++||.+. . .+++.....+.. ...+|+|+|||+|.+|+|+|..
T Consensus 81 d~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~-~-~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~ 158 (785)
T TIGR02374 81 DTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADK-K-GVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVG 158 (785)
T ss_pred ECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCC-C-CEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence 0 00000000112333445556999999999999864 2 243333222211 1247999999999999999999
Q ss_pred HHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC----cEEecCCcEee
Q psy12350 888 IATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT----GVRFQDGSYEQ 959 (1129)
Q Consensus 888 la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~----~V~~~dG~~~~ 959 (1129)
|++.|.+|+++++.+..++ +.+.......+.+ . ..+|+++.+ +.++.++ +|+++||++++
T Consensus 159 L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l---------~---~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~ 226 (785)
T TIGR02374 159 LQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQREL---------E---QKGLTFLLEKDTVEIVGATKADRIRFKDGSSLE 226 (785)
T ss_pred HHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHH---------H---HcCCEEEeCCceEEEEcCCceEEEEECCCCEEE
Confidence 9999999999988765432 1221111111111 0 125655544 6777543 37889999999
Q ss_pred ccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----chhHHHHHHHHHHHHHHcCCC
Q psy12350 960 VDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 960 ~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
+|.||+|+|++|+.+++.. .|+++++....+.+ +.+++||||++|++... ..+..+..||+.+|.++.|..
T Consensus 227 ~D~Vi~a~G~~Pn~~la~~-~gl~~~ggI~Vd~~---~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~ 302 (785)
T TIGR02374 227 ADLIVMAAGIRPNDELAVS-AGIKVNRGIIVNDS---MQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVE 302 (785)
T ss_pred cCEEEECCCCCcCcHHHHh-cCCccCCCEEECCC---cccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999876543 66666643332333 34589999999998642 234567889999999998864
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=200.93 Aligned_cols=268 Identities=18% Similarity=0.213 Sum_probs=161.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYG 818 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~ 818 (1129)
...|+|||+||+||++|..|.+.| ++|+|||+.+.+||...+ |||... +-..+.......+... +..
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G--~~VtVfE~~~~~GG~l~y---------GIP~~r-lp~~vi~~~i~~l~~~-Gv~ 372 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEG--FPVTVFEAFHDLGGVLRY---------GIPEFR-LPNQLIDDVVEKIKLL-GGR 372 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCCCCceEEc---------cCCCCc-ChHHHHHHHHHHHHhh-cCe
Confidence 457899999999999999999999 999999999999999874 444211 0000000000000000 111
Q ss_pred CCC----------CCCCCCCChhhhhhccC-CCCCCCCCCCCCCCCcEEeeccCCC---------------CCCCCCCeE
Q psy12350 819 HKG----------NADKSYIGAKDVLENYN-HPIYPEFKGKDMCQIPILHSRDYRT---------------PEPFAGKQA 872 (1129)
Q Consensus 819 ~~~----------~~~~~~~~~~~v~~~~~-~P~~P~i~G~~~f~g~~~hs~~~~~---------------~~~~~gk~V 872 (1129)
+.. +..........++.+|+ .|+.+++||.+. .| ++.+.+|.. .....||+|
T Consensus 373 f~~n~~vG~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl-~G-V~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~V 450 (944)
T PRK12779 373 FVKNFVVGKTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHL-LG-VMSANEFLTRVNLMRGLDDDYETPLPEVKGKEV 450 (944)
T ss_pred EEEeEEeccEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcC-cC-cEEHHHHHHHHHhhccccccccccccccCCCEE
Confidence 000 00001112334455888 699999999653 22 333333321 113468999
Q ss_pred EEEcCCccHHHHHHHHHhcCCEEEEEecCCC-CccchhhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEe---
Q psy12350 873 VVVGSGQSGLDITLDIATTGKQAVVVGSGQS-GLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELT--- 946 (1129)
Q Consensus 873 vVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~--- 946 (1129)
+|||||++|+|+|..+.+.|++|+++.+... .++..+.....+ ...+|++.. .+.++.
T Consensus 451 vVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a----------------~eeGV~~~~~~~p~~i~~d~ 514 (944)
T PRK12779 451 FVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHA----------------LEEGINLAVLRAPREFIGDD 514 (944)
T ss_pred EEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHHH----------------HHCCCEEEeCcceEEEEecC
Confidence 9999999999999999999999999976532 111111000000 001222211 122221
Q ss_pred -------------------CCc--EEecCCc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCC
Q psy12350 947 -------------------PTG--VRFQDGS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPT 1003 (1129)
Q Consensus 947 -------------------~~~--V~~~dG~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~ 1003 (1129)
.++ ....+|+ ++++|.||+|+|+.++..+.....++++++++...+....+.++.|+
T Consensus 515 ~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pg 594 (944)
T PRK12779 515 HTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKG 594 (944)
T ss_pred CCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCC
Confidence 111 1112343 47999999999999985433333567776655444444445678999
Q ss_pred cEEEccccccc-hhHHHHHHHHHHHHHHcCCCCCC
Q psy12350 1004 MFILGVPRHTL-LFNLFDLQVRLFQQLMQGHITLP 1037 (1129)
Q Consensus 1004 l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~~~lp 1037 (1129)
||++|++..+. ....|..+++.+|..+.....+.
T Consensus 595 VFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L~~~ 629 (944)
T PRK12779 595 VYSGGDAARGGSTAIRAAGDGQAAAKEIVGEIPFT 629 (944)
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999998664 56778889999998887655444
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=184.27 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=40.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..++|+|||||||||+||..|++...+++|+|||+.+.+||++.|
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 457999999999999999999864467999999999999999985
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=188.01 Aligned_cols=261 Identities=18% Similarity=0.189 Sum_probs=158.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
..++|||+|++|+++|..|.+.| ++|+|||+++.+||.+.+.. +.- ..+ ..+.. .....+..+ +..+
T Consensus 141 ~~VvIIGgGpaGl~aA~~l~~~g--~~V~lie~~~~~gG~l~~gi-p~~---~~~--~~~~~----~~~~~l~~~-gv~~ 207 (457)
T PRK11749 141 KKVAVIGAGPAGLTAAHRLARKG--YDVTIFEARDKAGGLLRYGI-PEF---RLP--KDIVD----REVERLLKL-GVEI 207 (457)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCCCCcEeeccC-CCc---cCC--HHHHH----HHHHHHHHc-CCEE
Confidence 46899999999999999999999 99999999999999886421 110 000 00000 000000000 0111
Q ss_pred CCCC-----C----CCCCChhhhhhccCC-CCCCCCCCCCCCCCcEEeeccCCCC--------CCCCCCeEEEEcCCccH
Q psy12350 820 KGNA-----D----KSYIGAKDVLENYNH-PIYPEFKGKDMCQIPILHSRDYRTP--------EPFAGKQAVVVGSGQSG 881 (1129)
Q Consensus 820 ~~~~-----~----~~~~~~~~v~~~~~~-P~~P~i~G~~~f~g~~~hs~~~~~~--------~~~~gk~VvVVG~G~Sg 881 (1129)
.... . ........++.+|+. |+.+++||.+. . .++++.++... ....+|+|+|||+|.+|
T Consensus 208 ~~~~~v~~~v~~~~~~~~~d~vvlAtGa~~~~~~~i~G~~~-~-gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g 285 (457)
T PRK11749 208 RTNTEVGRDITLDELRAGYDAVFIGTGAGLPRFLGIPGENL-G-GVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTA 285 (457)
T ss_pred EeCCEECCccCHHHHHhhCCEEEEccCCCCCCCCCCCCccC-C-CcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHH
Confidence 0000 0 001112233448874 78888999753 2 35554433211 11368999999999999
Q ss_pred HHHHHHHHhcCC-EEEEEecCCC-CccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc-----EEe
Q psy12350 882 LDITLDIATTGK-QAVVVGSGQS-GLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG-----VRF 952 (1129)
Q Consensus 882 ~eiA~~la~~~~-~V~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~-----V~~ 952 (1129)
+|+|..+++.|. +|+++.+... .++........ + ...+|++..+ +.++.+++ |++
T Consensus 286 ~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~-------------~---~~~GV~i~~~~~v~~i~~~~~~~~~v~~ 349 (457)
T PRK11749 286 MDAARTAKRLGAESVTIVYRRGREEMPASEEEVEH-------------A---KEEGVEFEWLAAPVEILGDEGRVTGVEF 349 (457)
T ss_pred HHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHH-------------H---HHCCCEEEecCCcEEEEecCCceEEEEE
Confidence 999999999987 8999977432 11111100000 0 0124555432 55554322 443
Q ss_pred c-------------------CCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc
Q psy12350 953 Q-------------------DGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT 1013 (1129)
Q Consensus 953 ~-------------------dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~ 1013 (1129)
. +++++++|.||+|+|++++..++....++.+++.+...+......++.|+||++|++...
T Consensus 350 ~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~ 429 (457)
T PRK11749 350 VRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTG 429 (457)
T ss_pred EEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCC
Confidence 2 234689999999999999976665445666665554444443456689999999998755
Q ss_pred -chhHHHHHHHHHHHHHHc
Q psy12350 1014 -LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1014 -~~~~~~e~qa~~~a~~l~ 1031 (1129)
.....+..||+.+|..+.
T Consensus 430 ~~~~~~A~~~G~~aA~~I~ 448 (457)
T PRK11749 430 AATVVWAVGDGKDAAEAIH 448 (457)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 356778888888887653
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-16 Score=190.62 Aligned_cols=265 Identities=15% Similarity=0.167 Sum_probs=163.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC----CCCCCCCCCCCccccccCcccc-----ccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT----EHIGCDQYGLPVHSSMYKSLKT-----NLP-- 808 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~----~~~g~~~~g~p~~~~~y~~~~~-----~~~-- 808 (1129)
.+++|||+|++|+++|..|.+.| ++|+|||++ .+||++... .+++... .. ...+...+.. +..
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g--~~V~liE~~-~~GG~~~~~~~i~~~pg~~~--~~-~~~l~~~l~~~~~~~gv~~~ 78 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAK--LDTLIIEKD-DFGGQITITSEVVNYPGILN--TT-GPELMQEMRQQAQDFGVKFL 78 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CCEEEEecC-CCCceEEeccccccCCCCcC--CC-HHHHHHHHHHHHHHcCCEEe
Confidence 57899999999999999999999 999999995 799987532 1222110 00 0000000000 000
Q ss_pred -ccccccc--C--CCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHH
Q psy12350 809 -KDLMELC--G--YGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLD 883 (1129)
Q Consensus 809 -~~~~~~~--~--~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~e 883 (1129)
....... + +..... ...+.....++.+|+.|+.|++||.+.|.+..+|.+...+...+.+++|+|||||.+|+|
T Consensus 79 ~~~V~~i~~~~~~~~V~~~-~g~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E 157 (555)
T TIGR03143 79 QAEVLDVDFDGDIKTIKTA-RGDYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAE 157 (555)
T ss_pred ccEEEEEEecCCEEEEEec-CCEEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHH
Confidence 0000000 0 000000 011222234555999999999999877777777776666656678999999999999999
Q ss_pred HHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc----EEe---cC
Q psy12350 884 ITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG----VRF---QD 954 (1129)
Q Consensus 884 iA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~----V~~---~d 954 (1129)
+|..|++.+++|+++.+.+.... ....... +. ...+|+++.+ |.++.+++ +.+ .+
T Consensus 158 ~A~~L~~~g~~Vtli~~~~~~~~-~~~~~~~-------------~~--~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~ 221 (555)
T TIGR03143 158 EAVFLTRYASKVTVIVREPDFTC-AKLIAEK-------------VK--NHPKIEVKFNTELKEATGDDGLRYAKFVNNVT 221 (555)
T ss_pred HHHHHHccCCEEEEEEeCCcccc-CHHHHHH-------------HH--hCCCcEEEeCCEEEEEEcCCcEEEEEEEECCC
Confidence 99999999999999988653210 0000000 00 0125666543 77776543 222 35
Q ss_pred CcEe----eccE----EEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc--chhHHHHHHHH
Q psy12350 955 GSYE----QVDI----ILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT--LLFNLFDLQVR 1024 (1129)
Q Consensus 955 G~~~----~~D~----VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~ 1024 (1129)
|+.. ++|. ||+|+|++|+..++.. ++.+++++...+.. .+.++.||||++|++... ..+..+..|++
T Consensus 222 G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~--~l~l~~~G~I~vd~-~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~ 298 (555)
T TIGR03143 222 GEITEYKAPKDAGTFGVFVFVGYAPSSELFKG--VVELDKRGYIPTNE-DMETNVPGVYAAGDLRPKELRQVVTAVADGA 298 (555)
T ss_pred CCEEEEeccccccceEEEEEeCCCCChhHHhh--hcccCCCCeEEeCC-ccccCCCCEEEceeccCCCcchheeHHhhHH
Confidence 7643 3666 9999999999887754 35566544333332 245589999999998532 23455677777
Q ss_pred HHHHHH
Q psy12350 1025 LFQQLM 1030 (1129)
Q Consensus 1025 ~~a~~l 1030 (1129)
.+|..+
T Consensus 299 ~Aa~~i 304 (555)
T TIGR03143 299 IAATSA 304 (555)
T ss_pred HHHHHH
Confidence 666654
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-17 Score=187.67 Aligned_cols=288 Identities=18% Similarity=0.265 Sum_probs=192.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCC-CceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGS-GFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~-~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
+++++|||.|.+|..+...+++..+ -++|++|-..+++ .|+. ..+++.+.
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~----------------------nY~R--i~Ls~vl~----- 53 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRP----------------------NYNR--ILLSSVLA----- 53 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCc----------------------cccc--eeeccccC-----
Confidence 4789999999999999999988443 4689999776542 2331 11111110
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
.--+.+++.-.-.+++++.++ +++.+.+|+.|++. ...| .........|| +||+|
T Consensus 54 --------~~~~~edi~l~~~dwy~~~~i--~L~~~~~v~~idr~-----~k~V-----~t~~g~~~~YD-----kLilA 108 (793)
T COG1251 54 --------GEKTAEDISLNRNDWYEENGI--TLYTGEKVIQIDRA-----NKVV-----TTDAGRTVSYD-----KLIIA 108 (793)
T ss_pred --------CCccHHHHhccchhhHHHcCc--EEEcCCeeEEeccC-----cceE-----EccCCcEeecc-----eeEEe
Confidence 001344555555778888887 89999999999873 2222 23445667899 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccc---
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFT--- 244 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--- 244 (1129)
|| |.|.+|++||.. .+|.+. . ++.+++.
T Consensus 109 TG--S~pfi~PiPG~~---~~~v~~---------------~-----------------------------R~i~D~~am~ 139 (793)
T COG1251 109 TG--SYPFILPIPGSD---LPGVFV---------------Y-----------------------------RTIDDVEAML 139 (793)
T ss_pred cC--ccccccCCCCCC---CCCeeE---------------E-----------------------------ecHHHHHHHH
Confidence 99 999999999842 222111 0 1111111
Q ss_pred c-ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC---------------CeEEcCC
Q psy12350 245 E-FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------------NVVKKPD 308 (1129)
Q Consensus 245 ~-~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------------~i~~~~~ 308 (1129)
. -+.++..++ ||||.-|+|.|..|.+.|-+|++++-.+.++...+.. ++.++..
T Consensus 140 ~~ar~~~~avV----------IGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~ 209 (793)
T COG1251 140 DCARNKKKAVV----------IGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKN 209 (793)
T ss_pred HHHhccCCcEE----------EccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccc
Confidence 0 112222222 6999999999999999999999999988776554322 4555655
Q ss_pred ceEEcCC----ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccc------
Q psy12350 309 IAELTPT----GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY------ 378 (1129)
Q Consensus 309 v~~~~~~----~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~------ 378 (1129)
..++.+. ++.|+||+.+++|.||+|+|.+|+..+-. ..++.+++..+++.|.+ ++||++|.+|-..
T Consensus 210 t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~-~aGlavnrGIvvnd~mq---TsdpdIYAvGEcae~~g~~ 285 (793)
T COG1251 210 TEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAK-EAGLAVNRGIVVNDYMQ---TSDPDIYAVGECAEHRGKV 285 (793)
T ss_pred hhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHH-hcCcCcCCCeeeccccc---ccCCCeeehhhHHHhcCcc
Confidence 5555433 48999999999999999999999988865 46688877556666666 5799999998552
Q ss_pred ---cccccccccceeeehhhcccc----cccc-----cccccccceecCC
Q psy12350 379 ---RYPFLHESCGIKVVNKNVQPL----YKHL-----INIEHPSMCIIGI 416 (1129)
Q Consensus 379 ---~~~~~~~~~~~~~~a~~~~~~----~~~~-----~~~~~~~~~~~~~ 416 (1129)
.+|..+ |++.+|..+.+. |.+. ||..+.++.|+|-
T Consensus 286 yGLVaP~ye---q~~v~a~hl~~~~~~~y~gsv~stkLKv~Gvdl~S~GD 332 (793)
T COG1251 286 YGLVAPLYE---QAKVLADHLCGGEAEAYEGSVTSTKLKVSGVDVFSAGD 332 (793)
T ss_pred ceehhHHHH---HHHHHHHHhccCcccccccccchhhhcccccceeeccc
Confidence 345554 666677766654 3222 4444555555543
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.6e-17 Score=189.99 Aligned_cols=186 Identities=17% Similarity=0.195 Sum_probs=129.6
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCC--------------C--------CCCCCCeEEEEcCCccHHHHHHH
Q psy12350 830 AKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRT--------------P--------EPFAGKQAVVVGSGQSGLDITLD 887 (1129)
Q Consensus 830 ~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~--------------~--------~~~~gk~VvVVG~G~Sg~eiA~~ 887 (1129)
..-|+++|+.|..|.+||.++. +++.+.+.+ . ...+.++|+|||+|.+|+|+|.+
T Consensus 115 D~LViAtGs~~~~~~ipG~~e~---~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~ 191 (424)
T PTZ00318 115 DKLVVAHGARPNTFNIPGVEER---AFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAE 191 (424)
T ss_pred CEEEECCCcccCCCCCCCHHHc---CCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHH
Confidence 3445669999999999998642 111111110 0 01123599999999999999999
Q ss_pred HHh--------------cCCEEEEEecCCCCccch-hhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCcE
Q psy12350 888 IAT--------------TGKQAVVVGSGQSGLDIT-LDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTGV 950 (1129)
Q Consensus 888 la~--------------~~~~V~vv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~V 950 (1129)
|++ .+.+|+++++++..++.. +.....+.+.+. ..+|+++.+ |.+++++.|
T Consensus 192 l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~------------~~gV~v~~~~~v~~v~~~~v 259 (424)
T PTZ00318 192 LADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLR------------RLGVDIRTKTAVKEVLDKEV 259 (424)
T ss_pred HHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHH------------HCCCEEEeCCeEEEEeCCEE
Confidence 986 368999999876554322 122222221111 126777654 999999999
Q ss_pred EecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc------chhHHHHHHHH
Q psy12350 951 RFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT------LLFNLFDLQVR 1024 (1129)
Q Consensus 951 ~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~------~~~~~~e~qa~ 1024 (1129)
+++||+++++|.||||+|.+++ +++.. +++++++++...+...+..+++||||++|++... .....+..||+
T Consensus 260 ~~~~g~~i~~d~vi~~~G~~~~-~~~~~-~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~ 337 (424)
T PTZ00318 260 VLKDGEVIPTGLVVWSTGVGPG-PLTKQ-LKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGV 337 (424)
T ss_pred EECCCCEEEccEEEEccCCCCc-chhhh-cCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHH
Confidence 9999999999999999999997 66654 6666665554455555555789999999998752 24578899999
Q ss_pred HHHHHHcC
Q psy12350 1025 LFQQLMQG 1032 (1129)
Q Consensus 1025 ~~a~~l~g 1032 (1129)
++|++|.+
T Consensus 338 ~~A~ni~~ 345 (424)
T PTZ00318 338 YLAKEFNN 345 (424)
T ss_pred HHHHHHHH
Confidence 99988764
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-16 Score=195.28 Aligned_cols=266 Identities=16% Similarity=0.152 Sum_probs=157.5
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccc-cCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMEL-CGY 817 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~-~~~ 817 (1129)
..+++|||+|++|+++|..|++.| ++|+|||+++.+||.+.+. .|+ +.+|. ...........+.-..+ .+.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G--~~VtV~Ek~~~~GG~lr~~-IP~---~Rlp~--evL~~die~l~~~GVe~~~gt 610 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAG--HPVTVFEREENAGGVVKNI-IPQ---FRIPA--ELIQHDIEFVKAHGVKFEFGC 610 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC--CeEEEEecccccCcceeee-ccc---ccccH--HHHHHHHHHHHHcCCEEEeCc
Confidence 346899999999999999999999 9999999999999998642 111 01110 00000000000000000 000
Q ss_pred CC--CCCCCCCCCChhhhhhccCC-CCCCCCCCCCCCCCcEEeeccCCCC------CCCCCCeEEEEcCCccHHHHHHHH
Q psy12350 818 GH--KGNADKSYIGAKDVLENYNH-PIYPEFKGKDMCQIPILHSRDYRTP------EPFAGKQAVVVGSGQSGLDITLDI 888 (1129)
Q Consensus 818 ~~--~~~~~~~~~~~~~v~~~~~~-P~~P~i~G~~~f~g~~~hs~~~~~~------~~~~gk~VvVVG~G~Sg~eiA~~l 888 (1129)
.. ..+..........++++|+. |+.+++||.+. .++++.++... ....||+|+|||||++|+|+|..+
T Consensus 611 ~Vdi~le~L~~~gYDaVILATGA~~~~~l~IpG~~~---gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a 687 (1019)
T PRK09853 611 SPDLTVEQLKNEGYDYVVVAIGADKNGGLKLEGGNQ---NVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAA 687 (1019)
T ss_pred eeEEEhhhheeccCCEEEECcCCCCCCCCCCCCccC---CceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHH
Confidence 00 00000011123345558886 45667888652 34444333211 123589999999999999999998
Q ss_pred Hhc-C-CEEEEEecCCC-Cccchh-hhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEe----------------
Q psy12350 889 ATT-G-KQAVVVGSGQS-GLDITL-DIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELT---------------- 946 (1129)
Q Consensus 889 a~~-~-~~V~vv~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~---------------- 946 (1129)
.+. + ++|+++.+... .++... .+.... ..+|++... +.++.
T Consensus 688 ~RlgGakeVTLVyRr~~~~MPA~~eEle~Al-----------------eeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d 750 (1019)
T PRK09853 688 LRVPGVEKVTVVYRRTKQEMPAWREEYEEAL-----------------EDGVEFKELLNPESFDADGTLTCRVMKLGEPD 750 (1019)
T ss_pred HhcCCCceEEEEEccCcccccccHHHHHHHH-----------------HcCCEEEeCCceEEEEcCCcEEEEEEEeeccc
Confidence 887 4 58999977542 111111 010000 012222111 12221
Q ss_pred CCc----EEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-chhHHHHH
Q psy12350 947 PTG----VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-LLFNLFDL 1021 (1129)
Q Consensus 947 ~~~----V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~ 1021 (1129)
.++ +...++.++++|.||+|+|.+++.+++.. .|+.+++.+...+ ...+.++.|+||++|++..+ .....+..
T Consensus 751 ~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~-~GL~ld~~G~I~V-DetlqTs~pgVFAaGD~a~Gp~tvv~Ai~ 828 (1019)
T PRK09853 751 ESGRRRPVETGETVTLEADTVITAIGEQVDTELLKA-NGIPLDKKGWPVV-DANGETSLTNVYMIGDVQRGPSTIVAAIA 828 (1019)
T ss_pred CCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHh-cCccccCCCCEEe-CCCcccCCCCEEEEeccccCchHHHHHHH
Confidence 111 22334567899999999999999888854 6777765544333 34456689999999998754 46688999
Q ss_pred HHHHHHHHHcCCC
Q psy12350 1022 QVRLFQQLMQGHI 1034 (1129)
Q Consensus 1022 qa~~~a~~l~g~~ 1034 (1129)
||+.+|+.+.+..
T Consensus 829 qGr~AA~nI~~~~ 841 (1019)
T PRK09853 829 DARRAADAILSRE 841 (1019)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999998754
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-16 Score=191.45 Aligned_cols=268 Identities=15% Similarity=0.120 Sum_probs=160.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCc-c-ccccCccc-------cc--c
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPV-H-SSMYKSLK-------TN--L 807 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~-~-~~~y~~~~-------~~--~ 807 (1129)
..+++|||+|++|+++|..|.+.| ++++|+|. .+||+|........ ..+.+. . ..+...+. .+ .
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G--~~v~li~~--~~GG~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~l~~~gv~i~~ 286 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKG--LRTAMVAE--RIGGQVKDTVGIEN-LISVPYTTGSQLAANLEEHIKQYPIDLME 286 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CcEEEEec--CCCCccccCcCccc-ccccCCCCHHHHHHHHHHHHHHhCCeEEc
Confidence 357899999999999999999999 99999975 58998863210000 000000 0 00000000 00 0
Q ss_pred cccccccc--C--CCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHH
Q psy12350 808 PKDLMELC--G--YGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLD 883 (1129)
Q Consensus 808 ~~~~~~~~--~--~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~e 883 (1129)
........ + +.........+.....++.+|+.|+.|++||.+.|.+..++.....+.....+|+|+|||+|.+|+|
T Consensus 287 ~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E 366 (515)
T TIGR03140 287 NQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIE 366 (515)
T ss_pred CCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHH
Confidence 00000000 0 0000000112223334455999999999999766766666655544444457899999999999999
Q ss_pred HHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----cEEecCC-
Q psy12350 884 ITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----GVRFQDG- 955 (1129)
Q Consensus 884 iA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~~~dG- 955 (1129)
+|..|+..+++||++++.+.... ... +. ..+.. ..+|++..+ +.++.++ +|++.++
T Consensus 367 ~A~~L~~~g~~Vtli~~~~~l~~-~~~---------l~----~~l~~--~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~ 430 (515)
T TIGR03140 367 AAIDLAGIVRHVTVLEFADELKA-DKV---------LQ----DKLKS--LPNVDILTSAQTTEIVGDGDKVTGIRYQDRN 430 (515)
T ss_pred HHHHHHhcCcEEEEEEeCCcCCh-hHH---------HH----HHHhc--CCCCEEEECCeeEEEEcCCCEEEEEEEEECC
Confidence 99999999999999987543211 000 00 00100 125666544 7777654 3666543
Q ss_pred ----cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc--hhHHHHHHHHHHHHH
Q psy12350 956 ----SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL--LFNLFDLQVRLFQQL 1029 (1129)
Q Consensus 956 ----~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~--~~~~~e~qa~~~a~~ 1029 (1129)
+++++|.||+|+|++|+.+++.. . +++++++...+.. .+.++.||||++|++.... ....+..|+..+|..
T Consensus 431 ~~~~~~i~~D~vi~a~G~~Pn~~~l~~-~-~~~~~~G~I~vd~-~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~ 507 (515)
T TIGR03140 431 SGEEKQLDLDGVFVQIGLVPNTEWLKD-A-VELNRRGEIVIDE-RGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALS 507 (515)
T ss_pred CCcEEEEEcCEEEEEeCCcCCchHHhh-h-cccCCCCeEEECC-CCCCCCCCEEEcccccCCccceEEEEEccHHHHHHH
Confidence 35799999999999999888865 3 5555444332322 2345899999999987542 234555556655554
Q ss_pred H
Q psy12350 1030 M 1030 (1129)
Q Consensus 1030 l 1030 (1129)
+
T Consensus 508 i 508 (515)
T TIGR03140 508 A 508 (515)
T ss_pred H
Confidence 4
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-16 Score=192.44 Aligned_cols=284 Identities=14% Similarity=0.196 Sum_probs=165.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||..|++ .|++|+|||+.+.+||+|.|.. +.|
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~~~GG~l~~gi------------------------------p~~ 356 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHPEIGGMLTFGI------------------------------PPF 356 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCCCCCCeeeccC------------------------------Ccc
Confidence 35899999999999999999999 6689999999999999998511 001
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
. .+ .++.+...+....+|+ .++++++|..- +++.+ ....|| +|++|
T Consensus 357 ~---------l~-~~~~~~~~~~~~~~Gv--~~~~~~~v~~~-----------~~~~~------l~~~~D-----aV~la 402 (639)
T PRK12809 357 K---------LD-KTVLSQRREIFTAMGI--DFHLNCEIGRD-----------ITFSD------LTSEYD-----AVFIG 402 (639)
T ss_pred c---------CC-HHHHHHHHHHHHHCCe--EEEcCCccCCc-----------CCHHH------HHhcCC-----EEEEe
Confidence 0 01 2445555566677776 78888876310 00100 123489 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccc-hhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSE-KYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||... +..+.+||.. ..| .+.. .|+.... +..... .....+.
T Consensus 403 tGa~~-~~~~~i~g~~---~~g---------------v~~a~~~l~~~~---------------~~~~~~-~~~~~~~-- 445 (639)
T PRK12809 403 VGTYG-MMRADLPHED---APG---------------VIQALPFLTAHT---------------RQLMGL-PESEEYP-- 445 (639)
T ss_pred CCCCC-CCCCCCCCCc---cCC---------------cEeHHHHHHHHH---------------HhhccC-ccccccc--
Confidence 99532 3345565521 111 1110 0110000 000000 0000000
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccc-cEEEEccccCCcc-ccc---------CCCCeEEcCCceEEcC-
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA-TTVFLSHHSEHVK-KLR---------FPNNVVKKPDIAELTP- 314 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~-~~V~lv~r~~~~~-~~~---------~~~~i~~~~~v~~~~~- 314 (1129)
.....||+|+| +|+|++|+|.|..+.+.| ++||+++|++... +.. ..-++.....++++.+
T Consensus 446 ---~~~~~gk~vvV----iGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~~a~~eGv~~~~~~~~~~i~~~ 518 (639)
T PRK12809 446 ---LTDVEGKRVVV----LGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACD 518 (639)
T ss_pred ---cccCCCCeEEE----ECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCeEEeccCCEEEEEC
Confidence 00112444444 899999999998877776 6899999876431 110 0114555666777742
Q ss_pred -Cc----eEE---c------CC---------C--EeecCEEEEccccccc-CCCCCCCCCeEeecCcccc--cc-ccccc
Q psy12350 315 -TG----VRF---Q------DG---------S--YEQVDIILYCTGYTYR-YPFLHESCGIKVVNKNVQP--LY-KHLIN 365 (1129)
Q Consensus 315 -~~----v~~---~------dg---------~--~~~~D~VI~atG~~~~-~~~l~~~~~~~~~~~~~~~--l~-~~~~~ 365 (1129)
++ |.+ . +| + ++++|.||+|+|++++ ..++. +.++.++.+..+. -+ ...+-
T Consensus 519 ~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~-~~gl~~~~~G~i~vd~~~~~~~~ 597 (639)
T PRK12809 519 EDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQ-GSGIKLDKWGLIQTGDVGYLPTQ 597 (639)
T ss_pred CCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCcccccc-ccCcccCCCCCEEeCCCcccCcc
Confidence 22 222 1 22 2 5799999999999986 45665 4556555433221 11 11233
Q ss_pred CCCCCeEEeccccccc-c-cccccceeeehhhccccccc
Q psy12350 366 IEHPSMCIIGYTYRYP-F-LHESCGIKVVNKNVQPLYKH 402 (1129)
Q Consensus 366 ~~~p~l~~~G~~~~~~-~-~~~~~~~~~~a~~~~~~~~~ 402 (1129)
++.|++|..|.....+ + ..+..+|+.+|+.+...+.+
T Consensus 598 Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~~l~~ 636 (639)
T PRK12809 598 THLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFDT 636 (639)
T ss_pred cCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 6789999999986432 1 33447888888877766544
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-16 Score=190.54 Aligned_cols=273 Identities=16% Similarity=0.217 Sum_probs=165.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+||||||+||++|..|++ .|++|+|||+.+.+||.+.+. ++.|
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~~~~GG~l~~g------------------------------ip~~ 183 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAGPKLGGMMRYG------------------------------IPAY 183 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCeeeec------------------------------CCCc
Confidence 34799999999999999999999 568999999999999998841 1111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceee-eeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNV-QPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
.+ + .++.+...+.+.++|+ .+++++.+ ..+... . ....|| +||+
T Consensus 184 ~~---------~-~~~~~~~l~~~~~~Gv--~~~~~~~~~~~~~~~---------------~---~~~~~D-----~Vi~ 228 (564)
T PRK12771 184 RL---------P-REVLDAEIQRILDLGV--EVRLGVRVGEDITLE---------------Q---LEGEFD-----AVFV 228 (564)
T ss_pred cC---------C-HHHHHHHHHHHHHCCC--EEEeCCEECCcCCHH---------------H---HHhhCC-----EEEE
Confidence 11 1 2334444455667776 67777766 322110 0 012388 9999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccc-hhhhcccccccCCCCCCccchhccccccccccccccc
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSE-KYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE 245 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 245 (1129)
|||... +..+.+++.. ..| .... .++ ......
T Consensus 229 AtG~~~-~~~~~i~g~~---~~g---------------v~~~~~~l--------------------------~~~~~~-- 261 (564)
T PRK12771 229 AIGAQL-GKRLPIPGED---AAG---------------VLDAVDFL--------------------------RAVGEG-- 261 (564)
T ss_pred eeCCCC-CCcCCCCCCc---cCC---------------cEEHHHHH--------------------------HHhhcc--
Confidence 999432 2223344311 111 1000 000 000000
Q ss_pred ccccceeEeeceeeeecCCCCCCCCcccchhhhcccc-cEEEEccccCCcc-cc---------cCCCCeEEcCCceEEcC
Q psy12350 246 FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA-TTVFLSHHSEHVK-KL---------RFPNNVVKKPDIAELTP 314 (1129)
Q Consensus 246 ~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~-~~V~lv~r~~~~~-~~---------~~~~~i~~~~~v~~~~~ 314 (1129)
. ....+++|+| +|+|.+|+|.+..+.+.+ ++|++++|.+... +. ...-++.....+.++.+
T Consensus 262 ---~-~~~~gk~v~V----iGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~~~~a~~~GVki~~~~~~~~i~~ 333 (564)
T PRK12771 262 ---E-PPFLGKRVVV----IGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEIEEALREGVEINWLRTPVEIEG 333 (564)
T ss_pred ---C-CcCCCCCEEE----ECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHHHHHHHHcCCEEEecCCcEEEEc
Confidence 0 0112344444 899999999999888877 7899999875321 10 01114555666777753
Q ss_pred C--c---e---EE------c-------CC--CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCe
Q psy12350 315 T--G---V---RF------Q-------DG--SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSM 371 (1129)
Q Consensus 315 ~--~---v---~~------~-------dg--~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l 371 (1129)
+ + + .+ . +| .++++|.||+|+|++++.+++....++. ++++.+......+.++.|++
T Consensus 334 ~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~-~~~G~i~vd~~~~~ts~~~V 412 (564)
T PRK12771 334 DENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVE-VGRGVVQVDPNFMMTGRPGV 412 (564)
T ss_pred CCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcc-cCCCCEEeCCCCccCCCCCE
Confidence 3 1 1 11 1 22 2579999999999999988887434444 33443333333445678999
Q ss_pred EEeccccccc--ccccccceeeehhhcccccccc
Q psy12350 372 CIIGYTYRYP--FLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 372 ~~~G~~~~~~--~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
|.+|.....| ...+..||+.+|.++...+.+.
T Consensus 413 fa~GD~~~g~~~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 413 FAGGDMVPGPRTVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred EeccCcCCCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999876432 2344588888888887776654
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-16 Score=202.08 Aligned_cols=277 Identities=13% Similarity=0.096 Sum_probs=161.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+|||||||||+||.+|++ .|++|+|+|+++.+||.+.+... ...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar--~G~~V~liD~~~~~GG~~~~~~~---------------------------~~~--- 210 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAAR--AGARVILVDEQPEAGGSLLSEAE---------------------------TID--- 210 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCCCeeecccc---------------------------ccC---
Confidence 4789999999999999999999 67999999999999999874110 000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEecc-----------ccCccceEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGI-----------PRDTVGFYLFD 157 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~d 157 (1129)
-.+..++.+.+.+..+.++ ...++.+++|..+... .....+... ..+....+.+|
T Consensus 211 --------g~~~~~~~~~~~~~l~~~~-~v~v~~~t~V~~i~~~-----~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~ 276 (985)
T TIGR01372 211 --------GKPAADWAAATVAELTAMP-EVTLLPRTTAFGYYDH-----NTVGALERVTDHLDAPPKGVPRERLWRIRAK 276 (985)
T ss_pred --------CccHHHHHHHHHHHHhcCC-CcEEEcCCEEEEEecC-----CeEEEEEEeeeccccccCCccccceEEEEcC
Confidence 0011233222333333332 1277888888776531 000001000 00111245677
Q ss_pred ceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFA 237 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 237 (1129)
+|||||| +.|..|++||.. .+|. ..... .....
T Consensus 277 -----~VILATG--a~~r~~pipG~~---~pgV---------------~~~~~----------------------~~~~l 309 (985)
T TIGR01372 277 -----RVVLATG--AHERPLVFANND---RPGV---------------MLAGA----------------------ARTYL 309 (985)
T ss_pred -----EEEEcCC--CCCcCCCCCCCC---CCCc---------------EEchH----------------------HHHHH
Confidence 9999999 778888887732 1121 11000 00000
Q ss_pred ccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccc-cEEEEccccCCcccc------cCCCCeEEcCCce
Q psy12350 238 RCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA-TTVFLSHHSEHVKKL------RFPNNVVKKPDIA 310 (1129)
Q Consensus 238 ~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~-~~V~lv~r~~~~~~~------~~~~~i~~~~~v~ 310 (1129)
..... .. |++|+| +|+|++|+|+|..|++.| +.|+++++.+.+.+. ...-++..+..|+
T Consensus 310 ~~~~~---~~-------gk~VvV----iG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~~~l~~~L~~~GV~i~~~~~v~ 375 (985)
T TIGR01372 310 NRYGV---AP-------GKRIVV----ATNNDSAYRAAADLLAAGIAVVAIIDARADVSPEARAEARELGIEVLTGHVVA 375 (985)
T ss_pred HhhCc---CC-------CCeEEE----ECCCHHHHHHHHHHHHcCCceEEEEccCcchhHHHHHHHHHcCCEEEcCCeEE
Confidence 00000 11 333344 899999999999999999 568898876644221 1112455567788
Q ss_pred EEcCC----ceEEc----CCCEeecCEEEEcccccccCCCCCCC-CCeEeecCcccccccccccCCCCCeEEecccccc-
Q psy12350 311 ELTPT----GVRFQ----DGSYEQVDIILYCTGYTYRYPFLHES-CGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY- 380 (1129)
Q Consensus 311 ~~~~~----~v~~~----dg~~~~~D~VI~atG~~~~~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~- 380 (1129)
++.++ +|.+. +++++++|.|++++|++++..++... +.+..++.. ..+. -.++.|++|.+|.....
T Consensus 376 ~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~--~~~~--~~t~v~gVyaaGD~~g~~ 451 (985)
T TIGR01372 376 ATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAI--AAFL--PGDAVQGCILAGAANGLF 451 (985)
T ss_pred EEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeecccc--Ccee--cCCCCCCeEEeeccCCcc
Confidence 88764 35665 45578999999999999999886521 223333211 1110 01457899999976532
Q ss_pred cccccccceeeehhhc
Q psy12350 381 PFLHESCGIKVVNKNV 396 (1129)
Q Consensus 381 ~~~~~~~~~~~~a~~~ 396 (1129)
.......+++.+|..+
T Consensus 452 ~~~~A~~eG~~Aa~~i 467 (985)
T TIGR01372 452 GLAAALADGAAAGAAA 467 (985)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 2223335555555444
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.8e-16 Score=191.58 Aligned_cols=275 Identities=16% Similarity=0.208 Sum_probs=155.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
+.++|+|||||+||++||..|++ .|++|+|||+.+.+||.+.+. ++.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~--~G~~v~vie~~~~~gG~~~~~------------------------------i~~- 328 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLAT--MGYEVTVYESLSKPGGVMRYG------------------------------IPS- 328 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceEeec------------------------------CCc-
Confidence 45799999999999999999999 679999999999999988741 000
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
+....++.+...+..+++++ .++++++|..-. .. . .....|| +||+|
T Consensus 329 ---------~~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~~~-----------~~---~---~~~~~yD-----~vilA 375 (604)
T PRK13984 329 ---------YRLPDEALDKDIAFIEALGV--KIHLNTRVGKDI-----------PL---E---ELREKHD-----AVFLS 375 (604)
T ss_pred ---------ccCCHHHHHHHHHHHHHCCc--EEECCCEeCCcC-----------CH---H---HHHhcCC-----EEEEE
Confidence 00112344444455666776 788888773100 00 0 0123599 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCccccccccc-chhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRS-EKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||. ..|+.+++||.... + .+. ..++..+. ..... +.
T Consensus 376 tGa-~~~r~l~i~G~~~~---g---------------v~~a~~~l~~~~-------------------~~~~~-~~---- 412 (604)
T PRK13984 376 TGF-TLGRSTRIPGTDHP---D---------------VIQALPLLREIR-------------------DYLRG-EG---- 412 (604)
T ss_pred cCc-CCCccCCCCCcCCc---C---------------eEeHHHHHHHHH-------------------hhhcc-CC----
Confidence 993 23567777773211 1 000 00100000 00000 00
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccc------cEEEEccccC--CcccccC-------CC--CeEEcCCc
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA------TTVFLSHHSE--HVKKLRF-------PN--NVVKKPDI 309 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~------~~V~lv~r~~--~~~~~~~-------~~--~i~~~~~v 309 (1129)
. ..-++++|+| ||||++|+|+|..+++.+ .+|+++.... ..++... .. ++.....+
T Consensus 413 --~-~~~~~k~VvV----IGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e~~~~~~~GV~i~~~~~~ 485 (604)
T PRK13984 413 --P-KPKIPRSLVV----IGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEEGLEEGVVIYPGWGP 485 (604)
T ss_pred --C-cCCCCCcEEE----ECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHHHHHHHHHcCCEEEeCCCC
Confidence 0 0001334444 899999999999998774 3788874321 1111100 11 23334445
Q ss_pred eEEcC-C----ceEEc--------CC-----------CEeecCEEEEcccccccCCCCCCCC--CeEeecCccccccccc
Q psy12350 310 AELTP-T----GVRFQ--------DG-----------SYEQVDIILYCTGYTYRYPFLHESC--GIKVVNKNVQPLYKHL 363 (1129)
Q Consensus 310 ~~~~~-~----~v~~~--------dg-----------~~~~~D~VI~atG~~~~~~~l~~~~--~~~~~~~~~~~l~~~~ 363 (1129)
.++.+ + +|.+. +| .++++|.||+|+|++++..+|...+ ++..+ +..+....+
T Consensus 486 ~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~-~G~i~vd~~- 563 (604)
T PRK13984 486 MEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFV-RGRILTNEY- 563 (604)
T ss_pred EEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCcccc-CCeEEeCCC-
Confidence 55532 1 12221 12 3579999999999999988876432 23322 121111111
Q ss_pred ccCCCCCeEEecccccc-cccccccceeeehhhccccc
Q psy12350 364 INIEHPSMCIIGYTYRY-PFLHESCGIKVVNKNVQPLY 400 (1129)
Q Consensus 364 ~~~~~p~l~~~G~~~~~-~~~~~~~~~~~~a~~~~~~~ 400 (1129)
+-++.|++|.+|..... .+..+..+|+.+|..+...+
T Consensus 564 ~~Ts~~gVfAaGD~~~~~~~v~Ai~~G~~AA~~I~~~L 601 (604)
T PRK13984 564 GQTSIPWLFAGGDIVHGPDIIHGVADGYWAAEGIDMYL 601 (604)
T ss_pred CccCCCCEEEecCcCCchHHHHHHHHHHHHHHHHHHHh
Confidence 23578999999988643 23344577777777666544
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.2e-16 Score=189.90 Aligned_cols=264 Identities=17% Similarity=0.132 Sum_probs=155.9
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccc-----
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMEL----- 814 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~----- 814 (1129)
.+++|||+||+|++||..|++.| ++|+|||+++.+||...+. .|. +.+|.. ............-..+
T Consensus 538 kkVaIIGGGPAGLSAA~~LAr~G--~~VTV~Ek~~~lGG~l~~~-IP~---~rlp~e--~l~~~ie~l~~~GVe~~~g~~ 609 (1012)
T TIGR03315 538 HKVAVIGAGPAGLSAGYFLARAG--HPVTVFEKKEKPGGVVKNI-IPE---FRISAE--SIQKDIELVKFHGVEFKYGCS 609 (1012)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CeEEEEecccccCceeeec-ccc---cCCCHH--HHHHHHHHHHhcCcEEEEecc
Confidence 47899999999999999999999 9999999999999987542 111 111100 0000000000000000
Q ss_pred cCCCCCCCCCCCCCChhhhhhccCC-CCCCCCCCCCCCCCcEEeeccCC----C--CCCCCCCeEEEEcCCccHHHHHHH
Q psy12350 815 CGYGHKGNADKSYIGAKDVLENYNH-PIYPEFKGKDMCQIPILHSRDYR----T--PEPFAGKQAVVVGSGQSGLDITLD 887 (1129)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~v~~~~~~-P~~P~i~G~~~f~g~~~hs~~~~----~--~~~~~gk~VvVVG~G~Sg~eiA~~ 887 (1129)
.+..... .........++++|+. ++.+.++|.+. .++.+.++. + .....||+|+|||||++|+|+|..
T Consensus 610 ~d~~ve~--l~~~gYDaVIIATGA~~~~~l~I~G~~~---~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~ 684 (1012)
T TIGR03315 610 PDLTVAE--LKNQGYKYVILAIGAWKHGPLRLEGGGE---RVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARA 684 (1012)
T ss_pred cceEhhh--hhcccccEEEECCCCCCCCCCCcCCCCc---ceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHH
Confidence 0000000 0011122344558876 44556777532 344433322 1 112359999999999999999999
Q ss_pred HHhc-C-CEEEEEecCCC-Cccchh-hhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEe---------------
Q psy12350 888 IATT-G-KQAVVVGSGQS-GLDITL-DIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELT--------------- 946 (1129)
Q Consensus 888 la~~-~-~~V~vv~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~--------------- 946 (1129)
+.+. | ++|+++.+... .++... .+.... ..+|++... +.+++
T Consensus 685 a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~al-----------------eeGVe~~~~~~p~~I~~g~l~v~~~~l~~~d 747 (1012)
T TIGR03315 685 ALRVPGVEKVTVVYRRTKRYMPASREELEEAL-----------------EDGVDFKELLSPESFEDGTLTCEVMKLGEPD 747 (1012)
T ss_pred HHHhCCCceEEEEEccCccccccCHHHHHHHH-----------------HcCCEEEeCCceEEEECCeEEEEEEEeeccc
Confidence 8876 6 58999977542 111111 111100 012222111 11221
Q ss_pred CCc--EEecCCc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-chhHHHHH
Q psy12350 947 PTG--VRFQDGS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-LLFNLFDL 1021 (1129)
Q Consensus 947 ~~~--V~~~dG~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~ 1021 (1129)
.++ ....+|+ ++++|.||+|+|.+++..++.. .|+.+++.+...+......++.|+||++|++..+ .....+..
T Consensus 748 ~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~-~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIa 826 (1012)
T TIGR03315 748 ASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQK-NGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIA 826 (1012)
T ss_pred CCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHh-cCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHH
Confidence 111 1223454 5799999999999999887754 6777766554444444456789999999998744 46688999
Q ss_pred HHHHHHHHHcCCC
Q psy12350 1022 QVRLFQQLMQGHI 1034 (1129)
Q Consensus 1022 qa~~~a~~l~g~~ 1034 (1129)
||+.+|..+.++.
T Consensus 827 qGr~AA~nIl~~~ 839 (1012)
T TIGR03315 827 DGRKAANAILSRE 839 (1012)
T ss_pred HHHHHHHHHhccc
Confidence 9999999998654
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.1e-16 Score=183.89 Aligned_cols=252 Identities=17% Similarity=0.241 Sum_probs=151.5
Q ss_pred HHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCCCCCCCCCCCCHHH
Q psy12350 23 TATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHHKGHPDKSYIAAND 102 (1129)
Q Consensus 23 ~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 102 (1129)
+||++|++.+++++|+|||+++..+ |.+ ..++....+ .....++
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~----~~~--------------------~~l~~~~~g------------~~~~~~~ 44 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVS----FAN--------------------CGLPYVIGG------------VIDDRNK 44 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCcee----EEc--------------------CCCCeEecc------------ccCCHHH
Confidence 4789998877789999999987532 100 001100000 0111122
Q ss_pred HHHH-HHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEE--ecceeeeEEEEecccCCCCCcccc
Q psy12350 103 VLEY-LNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL--FDLQVRFFLQLMQGHVTLPSKAEM 179 (1129)
Q Consensus 103 ~~~y-l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~lvvAtG~~~~p~~p~i 179 (1129)
+..| .+.+.+++++ .++++++|+.+++ +.+.+.+.+. +...... || +|||||| +.|+.|++
T Consensus 45 ~~~~~~~~~~~~~gv--~~~~~~~V~~id~-----~~~~v~~~~~--~~~~~~~~~yd-----~lIiATG--~~p~~~~i 108 (427)
T TIGR03385 45 LLAYTPEVFIKKRGI--DVKTNHEVIEVND-----ERQTVVVRNN--KTNETYEESYD-----YLILSPG--ASPIVPNI 108 (427)
T ss_pred cccCCHHHHHHhcCC--eEEecCEEEEEEC-----CCCEEEEEEC--CCCCEEecCCC-----EEEECCC--CCCCCCCC
Confidence 2333 2345567776 7888999999875 4455555432 1223345 99 9999999 78888888
Q ss_pred ccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccccceeEeeceee
Q psy12350 180 LADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKDKYKIINEKAF 259 (1129)
Q Consensus 180 ~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~ 259 (1129)
||..... .+.... ...+......+.....++++|
T Consensus 109 ~G~~~~~------------------v~~~~~----------------------~~~~~~~~~~l~~~~~~~vvV------ 142 (427)
T TIGR03385 109 EGINLDI------------------VFTLRN----------------------LEDTDAIKQYIDKNKVENVVI------ 142 (427)
T ss_pred CCcCCCC------------------EEEECC----------------------HHHHHHHHHHHhhcCCCeEEE------
Confidence 7732100 000000 000000000010011233443
Q ss_pred eecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC---------------CCeEEcCCceEEcCCc--eEEcCC
Q psy12350 260 VRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP---------------NNVVKKPDIAELTPTG--VRFQDG 322 (1129)
Q Consensus 260 v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~---------------~~i~~~~~v~~~~~~~--v~~~dg 322 (1129)
||||++|+|+|..|++.+.+|+++++.+.++...++ -++..+..|.++++++ +++.+|
T Consensus 143 -----iGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g 217 (427)
T TIGR03385 143 -----IGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSG 217 (427)
T ss_pred -----ECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCC
Confidence 899999999999999999999999998866321111 1455577788887654 377899
Q ss_pred CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccc
Q psy12350 323 SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYR 379 (1129)
Q Consensus 323 ~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~ 379 (1129)
+++++|.||+|+|.+++.+++. ..++..+++..+....++ -++.|++|.+|....
T Consensus 218 ~~i~~D~vi~a~G~~p~~~~l~-~~gl~~~~~G~i~vd~~~-~t~~~~Vya~GD~~~ 272 (427)
T TIGR03385 218 GVYQADMVILATGIKPNSELAK-DSGLKLGETGAIWVNEKF-QTSVPNIYAAGDVAE 272 (427)
T ss_pred CEEEeCEEEECCCccCCHHHHH-hcCcccCCCCCEEECCCc-EeCCCCEEEeeeeEE
Confidence 9999999999999999988876 344555443333322222 246788999887753
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.5e-16 Score=192.51 Aligned_cols=260 Identities=19% Similarity=0.236 Sum_probs=154.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
.+++|||+|++|+++|..|.+.| ++|+|||+.+.+||.+.+ |+|... .-..........+..+ ...+
T Consensus 432 ~~V~IIGaGpAGl~aA~~l~~~G--~~V~v~e~~~~~GG~l~~---------gip~~r-lp~~~~~~~~~~l~~~-gv~~ 498 (752)
T PRK12778 432 KKVAVIGSGPAGLSFAGDLAKRG--YDVTVFEALHEIGGVLKY---------GIPEFR-LPKKIVDVEIENLKKL-GVKF 498 (752)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCeeee---------cCCCCC-CCHHHHHHHHHHHHHC-CCEE
Confidence 36799999999999999999999 999999999999999875 333110 0000000000000000 0111
Q ss_pred CCC-----C-----CCCCCChhhhhhccC-CCCCCCCCCCCCCCCcEEeeccCCC-------------CCCCCCCeEEEE
Q psy12350 820 KGN-----A-----DKSYIGAKDVLENYN-HPIYPEFKGKDMCQIPILHSRDYRT-------------PEPFAGKQAVVV 875 (1129)
Q Consensus 820 ~~~-----~-----~~~~~~~~~v~~~~~-~P~~P~i~G~~~f~g~~~hs~~~~~-------------~~~~~gk~VvVV 875 (1129)
..+ . .........++.+|+ .|+.|++||.+. ..++++.++.. .....||+|+||
T Consensus 499 ~~~~~v~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~--~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVI 576 (752)
T PRK12778 499 ETDVIVGKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENS--NGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVV 576 (752)
T ss_pred ECCCEECCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCC--CCcEEHHHHHHHHhhcccccccccCcccCCCcEEEE
Confidence 000 0 000111223344887 699999999763 23455443321 112468999999
Q ss_pred cCCccHHHHHHHHHhcCCE-EEEEecCCC-CccchhhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEeC--Cc
Q psy12350 876 GSGQSGLDITLDIATTGKQ-AVVVGSGQS-GLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELTP--TG 949 (1129)
Q Consensus 876 G~G~Sg~eiA~~la~~~~~-V~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~~--~~ 949 (1129)
|||++|+|+|..+.+.|++ ||++.+... .++........++ ..+|++.. .+.++.. ++
T Consensus 577 GgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~----------------~~GV~i~~~~~~~~i~~~~~g 640 (752)
T PRK12778 577 GGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAK----------------EEGIEFLTLHNPIEYLADEKG 640 (752)
T ss_pred CCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHH----------------HcCCEEEecCcceEEEECCCC
Confidence 9999999999999999887 999977532 1111100000000 01222221 1222210 01
Q ss_pred ----EEe------------------cCCc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcE
Q psy12350 950 ----VRF------------------QDGS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMF 1005 (1129)
Q Consensus 950 ----V~~------------------~dG~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~ 1005 (1129)
|++ ..|+ ++++|.||+|+|++++..++....|+.+++.+...+.... .++.|+||
T Consensus 641 ~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~-~Ts~~gVf 719 (752)
T PRK12778 641 WVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEM-QSSIPGIY 719 (752)
T ss_pred EEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCC-CCCCCCEE
Confidence 111 1222 5799999999999999766554346777655443333333 67899999
Q ss_pred EEcccccc-chhHHHHHHHHHHHHHHc
Q psy12350 1006 ILGVPRHT-LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1006 ~iG~~~~~-~~~~~~e~qa~~~a~~l~ 1031 (1129)
++|++..+ .....+..|++.+|..+.
T Consensus 720 A~GD~~~g~~~vv~Av~~G~~AA~~I~ 746 (752)
T PRK12778 720 AGGDIVRGGATVILAMGDGKRAAAAID 746 (752)
T ss_pred EeCCccCCcHHHHHHHHHHHHHHHHHH
Confidence 99999765 356778888888887664
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-15 Score=184.41 Aligned_cols=258 Identities=17% Similarity=0.176 Sum_probs=151.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
-.++|||+|++|+++|..|.+.| ++|+|||+++.+||.|.+. +|... ....+.......+..+ +..+
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~G--~~Vtv~e~~~~~GG~l~~g---------ip~~~-~~~~~~~~~~~~l~~~-Gv~i 260 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKG--HDVTIFDANEQAGGMMRYG---------IPRFR-LPESVIDADIAPLRAM-GAEF 260 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCceeeec---------CCCCC-CCHHHHHHHHHHHHHc-CCEE
Confidence 36899999999999999999999 9999999999999998752 21000 0000000000000000 0000
Q ss_pred --CCC---CC--C--CCCChhhhhhccCCC-CCCCCCCCCCCCCcEEeeccCC-----CCCCCCCCeEEEEcCCccHHHH
Q psy12350 820 --KGN---AD--K--SYIGAKDVLENYNHP-IYPEFKGKDMCQIPILHSRDYR-----TPEPFAGKQAVVVGSGQSGLDI 884 (1129)
Q Consensus 820 --~~~---~~--~--~~~~~~~v~~~~~~P-~~P~i~G~~~f~g~~~hs~~~~-----~~~~~~gk~VvVVG~G~Sg~ei 884 (1129)
... +. . .......++.+|+.+ +.+++||.+. .| +++..++. ......||+|+|||+|++|+|+
T Consensus 261 ~~~~~v~~dv~~~~~~~~~DaVilAtGa~~~~~~~ipG~~~-~g-v~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~ 338 (652)
T PRK12814 261 RFNTVFGRDITLEELQKEFDAVLLAVGAQKASKMGIPGEEL-PG-VISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDA 338 (652)
T ss_pred EeCCcccCccCHHHHHhhcCEEEEEcCCCCCCCCCCCCcCc-CC-cEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHH
Confidence 000 00 0 000122233488875 5778999653 33 34433332 1223569999999999999999
Q ss_pred HHHHHhcCC-EEEEEecCCC-Cccchh-hhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC--C---------
Q psy12350 885 TLDIATTGK-QAVVVGSGQS-GLDITL-DIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP--T--------- 948 (1129)
Q Consensus 885 A~~la~~~~-~V~vv~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~--------- 948 (1129)
|..+.+.|. +|+++.+... .++... .+.... ..+|+++.. +.++.+ +
T Consensus 339 A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~-----------------~eGV~i~~~~~~~~i~~~~~~~~v~~~~~ 401 (652)
T PRK12814 339 ARTALRLGAESVTILYRRTREEMPANRAEIEEAL-----------------AEGVSLRELAAPVSIERSEGGLELTAIKM 401 (652)
T ss_pred HHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHH-----------------HcCCcEEeccCcEEEEecCCeEEEEEEEE
Confidence 999999875 6999976542 111111 000000 012222211 222211 1
Q ss_pred --------c---EEecCCc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc-
Q psy12350 949 --------G---VRFQDGS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL- 1014 (1129)
Q Consensus 949 --------~---V~~~dG~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~- 1014 (1129)
+ ....+|+ ++++|.||+|+|+.++..++.. .|+.++.++...+....+.++.|+||++|++....
T Consensus 402 ~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~-~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~ 480 (652)
T PRK12814 402 QQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEA-AGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGAD 480 (652)
T ss_pred EecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccc-cCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCch
Confidence 1 1112343 4799999999999999887754 66777665544555555667899999999987543
Q ss_pred hhHHHHHHHHHHHHHH
Q psy12350 1015 LFNLFDLQVRLFQQLM 1030 (1129)
Q Consensus 1015 ~~~~~e~qa~~~a~~l 1030 (1129)
....+..|++.+|..+
T Consensus 481 ~v~~Ai~~G~~AA~~I 496 (652)
T PRK12814 481 IAINAVEQGKRAAHAI 496 (652)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4466777777766554
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-15 Score=177.23 Aligned_cols=270 Identities=19% Similarity=0.216 Sum_probs=149.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
.+++|||+|++|+++|..|.+.| ++|+|||+.+.+||.+.+. +|..... ..+.......+..+ +..+
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G--~~V~vie~~~~~GG~l~~g---------ip~~~~~-~~~~~~~~~~~~~~-gv~~ 210 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAG--HKVTVFERADRIGGLLRYG---------IPDFKLE-KEVIDRRIELMEAE-GIEF 210 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC--CcEEEEecCCCCCceeeec---------CCcccCC-HHHHHHHHHHHHhC-CcEE
Confidence 36899999999999999999999 9999999999999988742 2211000 00000000000000 0000
Q ss_pred --CCCCCCCC-------CChhhhhhccCC-CCCCCCCCCCCCCCcEEeeccC-------------CCCCCCCCCeEEEEc
Q psy12350 820 --KGNADKSY-------IGAKDVLENYNH-PIYPEFKGKDMCQIPILHSRDY-------------RTPEPFAGKQAVVVG 876 (1129)
Q Consensus 820 --~~~~~~~~-------~~~~~v~~~~~~-P~~P~i~G~~~f~g~~~hs~~~-------------~~~~~~~gk~VvVVG 876 (1129)
...-.... .....++.+|+. |+.+.+||.+. . .+++..+| .......+|+|+|||
T Consensus 211 ~~~~~v~~~~~~~~~~~~~d~vvlAtGa~~~~~l~ipG~~~-~-gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIG 288 (471)
T PRK12810 211 RTNVEVGKDITAEELLAEYDAVFLGTGAYKPRDLGIPGRDL-D-GVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIG 288 (471)
T ss_pred EeCCEECCcCCHHHHHhhCCEEEEecCCCCCCcCCCCCccC-C-CcEEHHHHHHHHHhhhccccccccccCCCCEEEEEC
Confidence 00000000 011223338886 77888999653 2 23332211 111245699999999
Q ss_pred CCccHHHHHHHHHhcCC-EEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC-C-c--
Q psy12350 877 SGQSGLDITLDIATTGK-QAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP-T-G-- 949 (1129)
Q Consensus 877 ~G~Sg~eiA~~la~~~~-~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~-~-~-- 949 (1129)
+|++|+|+|..+.+.+. +|+++........... .......+ .... ........+|+++.. +.++.+ + .
T Consensus 289 gG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~--~~~~~~~~-~~~~--~~~~~~~~GV~i~~~~~~~~i~~~~g~v~ 363 (471)
T PRK12810 289 GGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRN--KNNPWPYW-PMKL--EVSNAHEEGVEREFNVQTKEFEGENGKVT 363 (471)
T ss_pred CcHHHHHHHHHHHHcCCCeEEEccccCCCccccc--cccCCccc-chHH--HHHHHHHcCCeEEeccCceEEEccCCEEE
Confidence 99999999998888875 7886654321110000 00000000 0000 000000123444332 555532 1 1
Q ss_pred -E-----EecCC---------cEeeccEEEEccCccCcCC-CCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc
Q psy12350 950 -V-----RFQDG---------SYEQVDIILCCTGYSNHYP-FLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT 1013 (1129)
Q Consensus 950 -V-----~~~dG---------~~~~~D~VI~aTG~~~~~~-fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~ 1013 (1129)
| .+.+| +++++|.||+|+|++++.. ++. .+++++++++........+.++.|+||++|++...
T Consensus 364 ~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~-~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g 442 (471)
T PRK12810 364 GVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLA-QFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRG 442 (471)
T ss_pred EEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhcc-ccCcccCCCCCEEeCCCcccCCCCCEEEccccCCC
Confidence 2 22232 3589999999999999854 544 46777765544333323345789999999998765
Q ss_pred c-hhHHHHHHHHHHHHHH
Q psy12350 1014 L-LFNLFDLQVRLFQQLM 1030 (1129)
Q Consensus 1014 ~-~~~~~e~qa~~~a~~l 1030 (1129)
. ....+..|++.+|..+
T Consensus 443 ~~~~~~Av~~G~~AA~~i 460 (471)
T PRK12810 443 QSLVVWAIAEGRQAARAI 460 (471)
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 3 3456777777766554
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-15 Score=173.88 Aligned_cols=267 Identities=15% Similarity=0.136 Sum_probs=152.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcc--ccccCccccc-----cccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVH--SSMYKSLKTN-----LPKDLM 812 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~--~~~y~~~~~~-----~~~~~~ 812 (1129)
.+++|||+|++|+.+|..|.+.| .+++++|+.+.+||.+.....+.. .+.. ......+... ......
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~----~~~~~~~~~~~~l~~~~i~~~~~~~v~ 92 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACLG--YEVHVYDKLPEPGGLMLFGIPEFR----IPIERVREGVKELEEAGVVFHTRTKVC 92 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCceeeecCcccc----cCHHHHHHHHHHHHhCCeEEecCcEEe
Confidence 36799999999999999999999 999999999999998764311110 0000 0000000000 000000
Q ss_pred cccCC-CCCCCCC-CC--------CCChhhhhhccC-CCCCCCCCCCCCCCCcEEeecc---------C--C---CCCCC
Q psy12350 813 ELCGY-GHKGNAD-KS--------YIGAKDVLENYN-HPIYPEFKGKDMCQIPILHSRD---------Y--R---TPEPF 867 (1129)
Q Consensus 813 ~~~~~-~~~~~~~-~~--------~~~~~~v~~~~~-~P~~P~i~G~~~f~g~~~hs~~---------~--~---~~~~~ 867 (1129)
..... ....... .. +.....++++|+ .|+.|++||.+. . .++++.+ + . ....+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ipg~~~-~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (352)
T PRK12770 93 CGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDL-P-GVYSALEYLFRIRAAKLGYLPWEKVPPV 170 (352)
T ss_pred eccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCCCCccc-c-CceeHHHHHHHhhhcccccccccccccc
Confidence 00000 0000000 00 111122333898 588999999753 2 2333211 1 1 11234
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhcCCE-EEEEecCCCCc-cchhhhhccccEEEEecCCccccccCCCCCeEEcCC--ee
Q psy12350 868 AGKQAVVVGSGQSGLDITLDIATTGKQ-AVVVGSGQSGL-DITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VA 943 (1129)
Q Consensus 868 ~gk~VvVVG~G~Sg~eiA~~la~~~~~-V~vv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~ 943 (1129)
.||+|+|||+|.+|+|+|..|++.+.+ |+++.+..... +...... + .+ ...+|++..+ +.
T Consensus 171 ~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~---~----------~l---~~~gi~i~~~~~v~ 234 (352)
T PRK12770 171 EGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEI---E----------RL---IARGVEFLELVTPV 234 (352)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHH---H----------HH---HHcCCEEeeccCce
Confidence 589999999999999999999988886 99997643210 0000000 0 00 0113444332 44
Q ss_pred EEeCCc----EEe--------------------cCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeec
Q psy12350 944 ELTPTG----VRF--------------------QDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINI 999 (1129)
Q Consensus 944 ~v~~~~----V~~--------------------~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~ 999 (1129)
++++++ |++ .+++++++|.||+|+|++|+..+..+..|+.++.++...+... ..+
T Consensus 235 ~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~-~~t 313 (352)
T PRK12770 235 RIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEK-HMT 313 (352)
T ss_pred eeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCC-ccc
Confidence 443211 221 1234689999999999999976554436777765443333333 335
Q ss_pred CCCCcEEEccccc-cchhHHHHHHHHHHHHHHc
Q psy12350 1000 EHPTMFILGVPRH-TLLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1000 ~~p~l~~iG~~~~-~~~~~~~e~qa~~~a~~l~ 1031 (1129)
+.|+||++|++.. ......+..||+.+|..+.
T Consensus 314 ~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~ 346 (352)
T PRK12770 314 SREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIH 346 (352)
T ss_pred CCCCEEEEcccccCcchHHHHHHHHHHHHHHHH
Confidence 7899999999876 3456788888888887764
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-15 Score=188.12 Aligned_cols=271 Identities=16% Similarity=0.164 Sum_probs=155.5
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYG 818 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~ 818 (1129)
..+++|||+||+||++|..|.+.| ++|+|||+.+.+||...+ |+|.... -..+.......+..+ +..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G--~~VtV~E~~~~~GG~l~~---------gip~~rl-~~e~~~~~~~~l~~~-Gv~ 496 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYG--VDVTVYEALHVVGGVLQY---------GIPSFRL-PRDIIDREVQRLVDI-GVK 496 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCCcceeec---------cCCccCC-CHHHHHHHHHHHHHC-CCE
Confidence 357899999999999999999999 999999999999997664 2331100 000000000000000 000
Q ss_pred CCCC--CCCC---------CCChhhhhhccC-CCCCCCCCCCCCCCCcEEeeccCC--------------CCCCCCCCeE
Q psy12350 819 HKGN--ADKS---------YIGAKDVLENYN-HPIYPEFKGKDMCQIPILHSRDYR--------------TPEPFAGKQA 872 (1129)
Q Consensus 819 ~~~~--~~~~---------~~~~~~v~~~~~-~P~~P~i~G~~~f~g~~~hs~~~~--------------~~~~~~gk~V 872 (1129)
+..+ -... ......++.+|+ .|+.|++||.+. ..+++..+|. +.....||+|
T Consensus 497 ~~~~~~vg~~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l--~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~V 574 (1006)
T PRK12775 497 IETNKVIGKTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFA--GQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSV 574 (1006)
T ss_pred EEeCCccCCccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCC--CCcEEHHHHHHHHHhcCccccccccCCccCCCEE
Confidence 0000 0000 111333445888 589999999643 3455554332 1123469999
Q ss_pred EEEcCCccHHHHHHHHHhcCC-EEEEEecCCC-CccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEe--
Q psy12350 873 VVVGSGQSGLDITLDIATTGK-QAVVVGSGQS-GLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELT-- 946 (1129)
Q Consensus 873 vVVG~G~Sg~eiA~~la~~~~-~V~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~-- 946 (1129)
+|||||++|+|+|..+.+.|+ +|+++.+... -.+..+.....+ ...+|++... +.++.
T Consensus 575 vVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~~~a----------------~eeGI~~~~~~~p~~i~~~ 638 (1006)
T PRK12775 575 VVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHA----------------KEEGIDFFFLHSPVEIYVD 638 (1006)
T ss_pred EEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHHHHHH----------------HhCCCEEEecCCcEEEEeC
Confidence 999999999999999999886 5787765321 111000000000 0112222211 22221
Q ss_pred CCc----EEe-----------------cCCc--EeeccEEEEccCccCcCCCCCCCCCeeecCCccccccc----ceeec
Q psy12350 947 PTG----VRF-----------------QDGS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYK----HTINI 999 (1129)
Q Consensus 947 ~~~----V~~-----------------~dG~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~----~~~~~ 999 (1129)
+++ |++ .+|+ ++++|.||+|+|+.++..++....++.+++.+...... ..+.+
T Consensus 639 ~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~T 718 (1006)
T PRK12775 639 AEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQST 718 (1006)
T ss_pred CCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCC
Confidence 111 111 1233 58999999999999997665543456665544333332 34567
Q ss_pred CCCCcEEEcccccc-chhHHHHHHHHHHHHH----HcCCCCCCCHH
Q psy12350 1000 EHPTMFILGVPRHT-LLFNLFDLQVRLFQQL----MQGHITLPSKE 1040 (1129)
Q Consensus 1000 ~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~----l~g~~~lp~~~ 1040 (1129)
+.|+||++|++..+ .....+..+++.+|.. |.+....|...
T Consensus 719 s~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~~~~~~~~~~ 764 (1006)
T PRK12775 719 NLPGVFAGGDIVTGGATVILAMGAGRRAARSIATYLRLGKKWPITA 764 (1006)
T ss_pred CCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHhcCCCcCCCc
Confidence 89999999998755 3456777788877765 45554444433
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-15 Score=160.19 Aligned_cols=147 Identities=32% Similarity=0.570 Sum_probs=86.1
Q ss_pred cccccCCchhhHHHHHHhhCCCcc-eEEEcccCCcCcccccC-CCCCCCCCCCCccccccCcccccccccc--ccccCCC
Q psy12350 743 IVDRHGPGGLTATKRLTEAGNGFT-CTTFEQADNIGGTWLYT-EHIGCDQYGLPVHSSMYKSLKTNLPKDL--MELCGYG 818 (1129)
Q Consensus 743 ~iiG~G~~gl~~a~~l~~~g~~~~-v~v~E~~~~~GG~w~~~-~~~g~~~~g~p~~~~~y~~~~~~~~~~~--~~~~~~~ 818 (1129)
+|||||++||++|.+|++.| .+ ++||||++.+||.|... .+..... | ....... ..+ .. ..+...+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g--~~~v~v~e~~~~~Gg~w~~~~~~~~~~~---~--~~~~~~~--~~~-~~~~~~~~~~~ 70 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERG--IDPVVVLERNDRPGGVWRRYYSYTRLHS---P--SFFSSDF--GLP-DFESFSFDDSP 70 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BS---S--SCCTGGS--S---CCCHSCHHHHH
T ss_pred CEECcCHHHHHHHHHHHhCC--CCcEEEEeCCCCCCCeeEEeCCCCcccc---C--ccccccc--cCC-cccccccccCC
Confidence 58999999999999999999 88 99999999999999842 1111100 0 0000000 000 00 0000000
Q ss_pred CCCCCCCCCCChhhhh-----------------------------------------------hcc--CCCCCCCCCCCC
Q psy12350 819 HKGNADKSYIGAKDVL-----------------------------------------------ENY--NHPIYPEFKGKD 849 (1129)
Q Consensus 819 ~~~~~~~~~~~~~~v~-----------------------------------------------~~~--~~P~~P~i~G~~ 849 (1129)
.. .+...++..+++. .+| +.|++|++|| .
T Consensus 71 ~~-~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g-~ 148 (203)
T PF13738_consen 71 EW-RWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPG-S 148 (203)
T ss_dssp HH-HHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TT-G
T ss_pred CC-CCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccccc-c
Confidence 00 0001112222221 144 6899999999 2
Q ss_pred CCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 850 MCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 850 ~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
.+. ..+|+.++.++.++++|+|+|||+|.||+|+|.+|++.+++|+++.|++
T Consensus 149 ~~~-~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 149 AFR-PIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp GCS-EEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred ccc-ceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 233 8899999999999999999999999999999999999999999998865
|
... |
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.8e-16 Score=177.34 Aligned_cols=264 Identities=15% Similarity=0.154 Sum_probs=153.5
Q ss_pred ccccccCCchhhHHHHHHhh-CCCcceEEEcccCCcCcccccCCCCCCCCC---C-CCccccccCcccccccccccccc-
Q psy12350 742 NIVDRHGPGGLTATKRLTEA-GNGFTCTTFEQADNIGGTWLYTEHIGCDQY---G-LPVHSSMYKSLKTNLPKDLMELC- 815 (1129)
Q Consensus 742 ~~iiG~G~~gl~~a~~l~~~-g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~---g-~p~~~~~y~~~~~~~~~~~~~~~- 815 (1129)
++|||+|++|+.+|++|+++ .+..+|+|+|+++..= +..+-++ | .+.. .+...+.....+.-..|-
T Consensus 2 vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~gv~~~~ 73 (364)
T TIGR03169 2 LVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSGMLPGMIAGHYSLD-EIRIDLRRLARQAGARFVI 73 (364)
T ss_pred EEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccchhhHHHheeCCHH-HhcccHHHHHHhcCCEEEE
Confidence 68999999999999999654 4458999999987521 1110000 0 0000 000000000000000000
Q ss_pred C----CCCCC-----CCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeecc----------CCCC-C-CCCCCeEEE
Q psy12350 816 G----YGHKG-----NADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRD----------YRTP-E-PFAGKQAVV 874 (1129)
Q Consensus 816 ~----~~~~~-----~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~----------~~~~-~-~~~gk~VvV 874 (1129)
+ ..... .....+....-++++|+.|..|++||..+. ++.... +... . ...+|+|+|
T Consensus 74 ~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvV 150 (364)
T TIGR03169 74 AEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADL---AVPVKPIENFLARWEALLESADAPPGTKRLAV 150 (364)
T ss_pred EEEEEEecccCEEEECCCCcccccEEEEccCCCCCCCCCCccccc---ccccCCHHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 0 00000 001223344455669999999999995431 111111 1010 0 124689999
Q ss_pred EcCCccHHHHHHHHHhc----C--CEEEEEecCCCCcc-chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEE
Q psy12350 875 VGSGQSGLDITLDIATT----G--KQAVVVGSGQSGLD-ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAEL 945 (1129)
Q Consensus 875 VG~G~Sg~eiA~~la~~----~--~~V~vv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v 945 (1129)
||+|.+|+|+|.+|++. + .+|+++ +.+..++ +.+.......+ .+. ..+|++..+ +.++
T Consensus 151 vG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~---------~l~---~~gV~v~~~~~v~~i 217 (364)
T TIGR03169 151 VGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLR---------LLA---RRGIEVHEGAPVTRG 217 (364)
T ss_pred ECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHH---------HHH---HCCCEEEeCCeeEEE
Confidence 99999999999999853 3 589998 4332221 11111111111 111 126777654 8888
Q ss_pred eCCcEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc------chhHHH
Q psy12350 946 TPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT------LLFNLF 1019 (1129)
Q Consensus 946 ~~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~------~~~~~~ 1019 (1129)
+++.|.+.+|+++++|.||+|+|.+++ +++.. .++.+++.+...+...+..+++||||++|++... .....+
T Consensus 218 ~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~l~~-~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A 295 (364)
T TIGR03169 218 PDGALILADGRTLPADAILWATGARAP-PWLAE-SGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYA 295 (364)
T ss_pred cCCeEEeCCCCEEecCEEEEccCCChh-hHHHH-cCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHH
Confidence 888899999999999999999999997 55653 4556655444444444434589999999998642 134568
Q ss_pred HHHHHHHHHHHc
Q psy12350 1020 DLQVRLFQQLMQ 1031 (1129)
Q Consensus 1020 e~qa~~~a~~l~ 1031 (1129)
..||+.+|+++.
T Consensus 296 ~~~g~~~a~ni~ 307 (364)
T TIGR03169 296 VRQAPILAANLR 307 (364)
T ss_pred HHhHHHHHHHHH
Confidence 889998888774
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >KOG4716|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.3e-15 Score=153.61 Aligned_cols=180 Identities=19% Similarity=0.192 Sum_probs=117.8
Q ss_pred ccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccc
Q psy12350 836 NYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRA 915 (1129)
Q Consensus 836 ~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~ 915 (1129)
+|.+|++|+|||..+ .-+.|.+.....-..|| -+|||+|+.|+|+|..|+..|.+||+.-|+-.+..++.++.+..
T Consensus 169 tG~RPrYp~IpG~~E---y~ITSDDlFsl~~~PGk-TLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrGFDqdmae~v 244 (503)
T KOG4716|consen 169 TGLRPRYPDIPGAKE---YGITSDDLFSLPYEPGK-TLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRGFDQDMAELV 244 (503)
T ss_pred ecCCCCCCCCCCcee---eeecccccccccCCCCc-eEEEccceeeeehhhhHhhcCCCcEEEEEEeecccccHHHHHHH
Confidence 999999999999765 35677776655444454 67889999999999999999999998877554444443333222
Q ss_pred cEEEEecCCccccccCCCCCeEEc----C-CeeEEeCCc--EEec---CCc--EeeccEEEEccCccCcCCCCC-CCCCe
Q psy12350 916 STVFLSHHSERVTSLCLPNNVVLK----P-DVAELTPTG--VRFQ---DGS--YEQVDIILCCTGYSNHYPFLH-ESCGI 982 (1129)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~V~~~----~-~i~~v~~~~--V~~~---dG~--~~~~D~VI~aTG~~~~~~fl~-~~~g~ 982 (1129)
...+..+ +|++. + .|+.++++. |... .++ +.+.|+|+||.|.++...-|. +..|+
T Consensus 245 ~~~m~~~------------Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GV 312 (503)
T KOG4716|consen 245 AEHMEER------------GIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGV 312 (503)
T ss_pred HHHHHHh------------CCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccce
Confidence 2211111 22221 1 145554444 2211 122 348999999999999876554 33678
Q ss_pred eecCCcccccccceeecCCCCcEEEcccccc--chhHHHHHHHHHHHHHHc
Q psy12350 983 KVVNKNVQPLYKHTINIEHPTMFILGVPRHT--LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 983 ~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~~a~~l~ 1031 (1129)
..++....-+-+..-.++.|++|+||++... -..|++.+.+|.+|+.+-
T Consensus 313 k~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf 363 (503)
T KOG4716|consen 313 KTNEKSGKIPVDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLF 363 (503)
T ss_pred eecccCCccccChHHhcCCCceEEecceecCCcccchhhhhhchHHHHHHh
Confidence 7754332222333345689999999998543 466999999999997654
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-15 Score=171.69 Aligned_cols=216 Identities=18% Similarity=0.189 Sum_probs=109.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccc-cCCccccccCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKT-NLPKEIMELSGY 87 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~-~~~~~~~~~~d~ 87 (1129)
.+|+++||.||++|+.|..|.+.+ ..++..|||++.. .|. +|....|.....+....|.+ ..|..-+.|..|
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~-~~~~~f~e~~~~f--~Wh----~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnY 74 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG-DLKALFLERRPSF--SWH----PGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNY 74 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH----EEEEES-SS----TT----GGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC-CCCEEEEecCCCC--CcC----CccCCCCCccccccccccCcCcCCCCcccHHHH
Confidence 479999999999999999999854 5899999997743 232 22111111111111111111 111111111111
Q ss_pred CCCC-------CCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccC-CCCceEEeccccCccceEEecce
Q psy12350 88 HHKG-------HPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINI-EHPSMCIIGIPRDTVGFYLFDLQ 159 (1129)
Q Consensus 88 ~~~~-------~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~ 159 (1129)
-... .-...+|++.++.+|++..+++++. .++++++|+.|+...... ..|.|...+ ..+.......+
T Consensus 75 L~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~--~v~~~~~V~~I~~~~~~~~~~~~V~~~~-~~g~~~~~~ar-- 149 (341)
T PF13434_consen 75 LHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDN--QVRYGSEVTSIEPDDDGDEDLFRVTTRD-SDGDGETYRAR-- 149 (341)
T ss_dssp HHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTT--TEEESEEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEEES--
T ss_pred HHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCC--ceEECCEEEEEEEecCCCccEEEEEEee-cCCCeeEEEeC--
Confidence 0000 0012467999999999999999863 699999999998754211 135565544 33334444455
Q ss_pred eeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccc
Q psy12350 160 VRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARC 239 (1129)
Q Consensus 160 ~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 239 (1129)
.|||||| ..|.+|+.-. .+.+ .-...|+..|+...
T Consensus 150 ---~vVla~G--~~P~iP~~~~----~~~~-----------~~~v~Hss~~~~~~------------------------- 184 (341)
T PF13434_consen 150 ---NVVLATG--GQPRIPEWFQ----DLPG-----------SPRVFHSSEYLSRI------------------------- 184 (341)
T ss_dssp ---EEEE------EE---GGGG----GGTT------------TTEEEGGGHHHHH-------------------------
T ss_pred ---eEEECcC--CCCCCCcchh----hcCC-----------CCCEEEehHhhhcc-------------------------
Confidence 8999999 8888886521 1000 01123333331110
Q ss_pred ccccccccccceeEeeceeeeecCCCCCCCCcccchhhhccccc--EEEEccccCCcc
Q psy12350 240 SEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEAT--TVFLSHHSEHVK 295 (1129)
Q Consensus 240 ~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~--~V~lv~r~~~~~ 295 (1129)
.. ....++++| ||||-||.|++..|.+.+. +|+++.|+..+.
T Consensus 185 ~~---~~~~~~V~V-----------VGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~ 228 (341)
T PF13434_consen 185 DQ---SLAGKRVAV-----------VGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFF 228 (341)
T ss_dssp T--------EEEEE-----------E-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-E
T ss_pred cc---ccCCCeEEE-----------ECCcHhHHHHHHHHHhCCCCcEEEEEECCCccC
Confidence 01 112344444 8999999999999988864 899999988553
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.3e-15 Score=174.46 Aligned_cols=188 Identities=15% Similarity=0.253 Sum_probs=131.2
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCC-------CCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 830 AKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTP-------EPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 830 ~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~-------~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
..-++++|+.|+.|++||++. ..+++..+..+. ....+|+|+|||+|.+|+|+|..|++.+.+|+++.+.+
T Consensus 93 d~lIiATG~~p~~~~i~G~~~--~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 170 (427)
T TIGR03385 93 DYLILSPGASPIVPNIEGINL--DIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE 170 (427)
T ss_pred CEEEECCCCCCCCCCCCCcCC--CCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 344566999999999999762 234443332211 12457999999999999999999999999999998865
Q ss_pred CCc-c-chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc--EEecCCcEeeccEEEEccCccCcCCCC
Q psy12350 903 SGL-D-ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG--VRFQDGSYEQVDIILCCTGYSNHYPFL 976 (1129)
Q Consensus 903 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl 976 (1129)
..+ + +.+.+.....+ .+. ..+|++..+ +.++++++ +.+.+|+++++|.||+|||++++.+++
T Consensus 171 ~~~~~~~~~~~~~~~~~---------~l~---~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l 238 (427)
T TIGR03385 171 RILNKLFDEEMNQIVEE---------ELK---KHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELA 238 (427)
T ss_pred ccCccccCHHHHHHHHH---------HHH---HcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHH
Confidence 432 1 11111111110 011 125666543 88887654 377889999999999999999998877
Q ss_pred CCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----------chhHHHHHHHHHHHHHHcCC
Q psy12350 977 HESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----------LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 977 ~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----------~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.. +|+.+++++...+... +.++.||||++|++... ...+.+..||+++|+.|.|.
T Consensus 239 ~~-~gl~~~~~G~i~vd~~-~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 239 KD-SGLKLGETGAIWVNEK-FQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred Hh-cCcccCCCCCEEECCC-cEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 54 6777765544444433 34589999999998642 34588999999999999885
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >KOG1336|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-14 Score=155.47 Aligned_cols=244 Identities=17% Similarity=0.192 Sum_probs=150.1
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCcccccccccccc-ccCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLME-LCGY 817 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~-~~~~ 817 (1129)
--.++|+|+|++|..|+.++++.++...++++-++..+ .|. -|-.+..+.....+..+..-+ |.++
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~-------pyd------r~~Ls~~~~~~~~~~a~r~~e~Yke~ 140 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL-------PYD------RARLSKFLLTVGEGLAKRTPEFYKEK 140 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC-------ccc------chhcccceeeccccccccChhhHhhc
Confidence 34568999999999999999999987788888765421 110 000011111111111111111 1111
Q ss_pred CCC-------------C-----CCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCC-----CCCCCeEEE
Q psy12350 818 GHK-------------G-----NADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPE-----PFAGKQAVV 874 (1129)
Q Consensus 818 ~~~-------------~-----~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~-----~~~gk~VvV 874 (1129)
-+. . .....+....-++.+|+.|+.|++||.+. -.+....+..+.. --.+++|++
T Consensus 141 gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~--~nv~~ireieda~~l~~~~~~~~~vV~ 218 (478)
T KOG1336|consen 141 GIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVEL--KNVFYLREIEDANRLVAAIQLGGKVVC 218 (478)
T ss_pred CceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccccCCCCCccc--cceeeeccHHHHHHHHHHhccCceEEE
Confidence 000 0 00111222223333999999999999872 1222222222211 113788999
Q ss_pred EcCCccHHHHHHHHHhcCCEEEEEecCCCCccc--hhhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEeCCc-
Q psy12350 875 VGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI--TLDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELTPTG- 949 (1129)
Q Consensus 875 VG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~~~~- 949 (1129)
+|+|..|+|+|.+|...+.+||++...++.++- .+.+.+... ..+. ..+|++.. .+.+++++.
T Consensus 219 vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~---------~y~e---~kgVk~~~~t~~s~l~~~~~ 286 (478)
T KOG1336|consen 219 VGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYE---------DYYE---NKGVKFYLGTVVSSLEGNSD 286 (478)
T ss_pred ECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHH---------HHHH---hcCeEEEEecceeecccCCC
Confidence 999999999999999999999999886655431 111111111 1111 12455543 377775532
Q ss_pred -----EEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccc
Q psy12350 950 -----VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH 1012 (1129)
Q Consensus 950 -----V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~ 1012 (1129)
|.+.||+++++|.||+++|-+|+.+|+.. |..++.++..+++.. |.+++||+|++|++..
T Consensus 287 Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~--g~~~~~~G~i~V~~~-f~t~~~~VyAiGDva~ 351 (478)
T KOG1336|consen 287 GEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEK--GILLDSKGGIKVDEF-FQTSVPNVYAIGDVAT 351 (478)
T ss_pred CcEEEEEeccCCEeccCeEEEeeccccccccccc--cceecccCCEeehhc-eeeccCCcccccceee
Confidence 78899999999999999999999999985 566677766666554 5667999999999864
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.7e-14 Score=171.27 Aligned_cols=261 Identities=17% Similarity=0.203 Sum_probs=147.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCcccccccccccccc-CCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELC-GYG 818 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~-~~~ 818 (1129)
..++|||+|++||++|..|.+.| ++|+|||+.+.+||.+.+ |+|... +-..+.......+..+. ++.
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G--~~V~V~E~~~~~GG~l~~---------gip~~~-l~~~~~~~~~~~~~~~Gv~~~ 395 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNG--VAVTVYDRHPEIGGLLTF---------GIPAFK-LDKSLLARRREIFSAMGIEFE 395 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCceeee---------cCCCcc-CCHHHHHHHHHHHHHCCeEEE
Confidence 36799999999999999999999 999999999999999875 222110 00000000000000000 000
Q ss_pred CCCCCCCCC-------CChhhhhhccCC-CCCCCCCCCCCCCCcEEeeccC-----------C---C--CCCCCCCeEEE
Q psy12350 819 HKGNADKSY-------IGAKDVLENYNH-PIYPEFKGKDMCQIPILHSRDY-----------R---T--PEPFAGKQAVV 874 (1129)
Q Consensus 819 ~~~~~~~~~-------~~~~~v~~~~~~-P~~P~i~G~~~f~g~~~hs~~~-----------~---~--~~~~~gk~VvV 874 (1129)
....-.... .....++.+|+. +..+.+||.+. .| +++..+| . + ...+.||+|+|
T Consensus 396 ~~~~v~~~i~~~~~~~~~DavilAtGa~~~~~l~i~g~~~-~G-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvV 473 (654)
T PRK12769 396 LNCEVGKDISLESLLEDYDAVFVGVGTYRSMKAGLPNEDA-PG-VYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVV 473 (654)
T ss_pred CCCEeCCcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCCC-CC-eEEhHHHHHHHHhhhccCccccccccccCCCCeEEE
Confidence 000000000 001112336664 44567888653 23 3221111 0 1 01357899999
Q ss_pred EcCCccHHHHHHHHHhcCC-EEEEEecCCCC-ccchhhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEe--CC
Q psy12350 875 VGSGQSGLDITLDIATTGK-QAVVVGSGQSG-LDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELT--PT 948 (1129)
Q Consensus 875 VG~G~Sg~eiA~~la~~~~-~V~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~--~~ 948 (1129)
||+|++|+|+|..+.+.|+ +|+++.+.... ++..+.....+. ..+|++.. .+.++. ++
T Consensus 474 IGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~----------------~~Gv~~~~~~~~~~i~~~~~ 537 (654)
T PRK12769 474 LGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAR----------------EEGANFEFNVQPVALELNEQ 537 (654)
T ss_pred ECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHH----------------HcCCeEEeccCcEEEEECCC
Confidence 9999999999999888875 79998764321 221111111000 11222221 122221 11
Q ss_pred c----EEe------------------cCCc--EeeccEEEEccCccCcC-CCCCCCCCeeecCCccccccc---ceeecC
Q psy12350 949 G----VRF------------------QDGS--YEQVDIILCCTGYSNHY-PFLHESCGIKVVNKNVQPLYK---HTINIE 1000 (1129)
Q Consensus 949 ~----V~~------------------~dG~--~~~~D~VI~aTG~~~~~-~fl~~~~g~~~~~~~~~~ly~---~~~~~~ 1000 (1129)
+ |++ ..|+ ++++|.||+|+|+.++. .++.. ++++++.++...... ..+.++
T Consensus 538 g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~-~gl~~~~~G~i~vd~~~~~~~~Ts 616 (654)
T PRK12769 538 GHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLES-HGVTVDKWGRIIADVESQYRYQTS 616 (654)
T ss_pred CeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccc-cCCcCCCCCCEEeCCCcccCcccC
Confidence 1 111 1233 48999999999999984 45544 677776654433221 124578
Q ss_pred CCCcEEEcccccc-chhHHHHHHHHHHHHHHc
Q psy12350 1001 HPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1001 ~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~ 1031 (1129)
.|+||++|++..+ .....+..|++.+|..+.
T Consensus 617 ~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~ 648 (654)
T PRK12769 617 NPKIFAGGDAVRGADLVVTAMAEGRHAAQGII 648 (654)
T ss_pred CCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999998765 355778888988887764
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.3e-14 Score=164.57 Aligned_cols=260 Identities=18% Similarity=0.206 Sum_probs=148.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
..++|||+|++|+++|..|.+.| ++|++||+.+.+||.+.+ |+|... .-..+.......+..+ +..+
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G--~~V~i~e~~~~~gG~l~~---------gip~~~-~~~~~~~~~~~~~~~~-Gv~~ 208 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAG--VQVVVFDRHPEIGGLLTF---------GIPSFK-LDKAVLSRRREIFTAM-GIEF 208 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCceeee---------cCcccc-CCHHHHHHHHHHHHHC-CCEE
Confidence 46799999999999999999999 999999999999998874 222110 0000000000000000 0000
Q ss_pred --CCCCCCCC-------CChhhhhhccCCCC-CCCCCCCCCCCCcEEeeccC-----------C-----CCCCCCCCeEE
Q psy12350 820 --KGNADKSY-------IGAKDVLENYNHPI-YPEFKGKDMCQIPILHSRDY-----------R-----TPEPFAGKQAV 873 (1129)
Q Consensus 820 --~~~~~~~~-------~~~~~v~~~~~~P~-~P~i~G~~~f~g~~~hs~~~-----------~-----~~~~~~gk~Vv 873 (1129)
...-.... .....++.+|+.+. .+++||.+. + .+++..+| . ......+|+|+
T Consensus 209 ~~~~~v~~~~~~~~~~~~~D~vilAtGa~~~~~~~i~g~~~-~-gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~Vv 286 (467)
T TIGR01318 209 HLNCEVGRDISLDDLLEDYDAVFLGVGTYRSMRGGLPGEDA-P-GVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVV 286 (467)
T ss_pred ECCCEeCCccCHHHHHhcCCEEEEEeCCCCCCcCCCCCcCC-C-CcEEHHHHHHHHHHHhcCCCccccccccccCCCEEE
Confidence 00000000 01122333888764 467888654 2 23332211 0 01124689999
Q ss_pred EEcCCccHHHHHHHHHhcC-CEEEEEecCCC-CccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC--
Q psy12350 874 VVGSGQSGLDITLDIATTG-KQAVVVGSGQS-GLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP-- 947 (1129)
Q Consensus 874 VVG~G~Sg~eiA~~la~~~-~~V~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~-- 947 (1129)
|||+|.+|+|+|..+.+.| ++||++.+... .++..+.....+ ...+|++... +.++..
T Consensus 287 VIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~~~~----------------~~~GV~~~~~~~~~~i~~~~ 350 (467)
T TIGR01318 287 VLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREVANA----------------REEGVEFLFNVQPVYIECDE 350 (467)
T ss_pred EECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHHHHH----------------HhcCCEEEecCCcEEEEECC
Confidence 9999999999999999988 47999987542 111111000000 0112333222 333321
Q ss_pred Cc----EEe------------------cCC--cEeeccEEEEccCccCcC-CCCCCCCCeeecCCccccc---ccceeec
Q psy12350 948 TG----VRF------------------QDG--SYEQVDIILCCTGYSNHY-PFLHESCGIKVVNKNVQPL---YKHTINI 999 (1129)
Q Consensus 948 ~~----V~~------------------~dG--~~~~~D~VI~aTG~~~~~-~fl~~~~g~~~~~~~~~~l---y~~~~~~ 999 (1129)
++ |++ .+| .++++|.||+|+|++++. .++.. .++++++++.... |...+.+
T Consensus 351 ~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~-~gl~~~~~g~i~vd~~~~~~~~T 429 (467)
T TIGR01318 351 DGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAG-HGITLDSWGRIITGDVSYLPYQT 429 (467)
T ss_pred CCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccc-cCccCCCCCCEEeCCccccCccC
Confidence 11 111 112 357999999999999984 44543 5666665443222 2234456
Q ss_pred CCCCcEEEccccccc-hhHHHHHHHHHHHHHHc
Q psy12350 1000 EHPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1000 ~~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~ 1031 (1129)
+.|+||++|++.... ....+..|++.+|..+.
T Consensus 430 ~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~ 462 (467)
T TIGR01318 430 TNPKIFAGGDAVRGADLVVTAVAEGRQAAQGIL 462 (467)
T ss_pred CCCCEEEECCcCCCccHHHHHHHHHHHHHHHHH
Confidence 899999999987653 45678888998887764
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.3e-13 Score=160.09 Aligned_cols=275 Identities=20% Similarity=0.190 Sum_probs=146.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
..++|||+|++|+.+|..|.+.| ++|++||+.+.+||...+. +|... .-..+.......+... +..+
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g--~~V~v~e~~~~~gG~l~~g---------ip~~~-~~~~~~~~~~~~~~~~-Gv~~ 210 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAG--HTVTVFEREDRCGGLLMYG---------IPNMK-LDKAIVDRRIDLLSAE-GIDF 210 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC--CeEEEEecCCCCCceeecc---------CCCcc-CCHHHHHHHHHHHHhC-CCEE
Confidence 36799999999999999999999 9999999999999977642 22100 0000000000000000 1100
Q ss_pred CCC--CCCCC-------CChhhhhhccCC-CCCCCCCCCCCCCCcEEeeccC--------CC-------CCCCCCCeEEE
Q psy12350 820 KGN--ADKSY-------IGAKDVLENYNH-PIYPEFKGKDMCQIPILHSRDY--------RT-------PEPFAGKQAVV 874 (1129)
Q Consensus 820 ~~~--~~~~~-------~~~~~v~~~~~~-P~~P~i~G~~~f~g~~~hs~~~--------~~-------~~~~~gk~VvV 874 (1129)
... -.... .....++.+|+. |+.|++||.+. +| ++...++ .+ .....+|+|+|
T Consensus 211 ~~~~~v~~~~~~~~~~~~~d~VilAtGa~~~~~l~i~G~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvV 288 (485)
T TIGR01317 211 VTNTEIGVDISADELKEQFDAVVLAGGATKPRDLPIPGREL-KG-IHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVV 288 (485)
T ss_pred ECCCEeCCccCHHHHHhhCCEEEEccCCCCCCcCCCCCcCC-CC-cEeHHHHHHHHhhhhccccccccccccCCCCEEEE
Confidence 000 00000 011223338887 88999999653 32 2222111 00 11256899999
Q ss_pred EcCCccHHHHHHHHHhcC-CEEEEEecCCCCccch------hhhh-----ccccEEEEe-cCCccccccCCCCCeEEc--
Q psy12350 875 VGSGQSGLDITLDIATTG-KQAVVVGSGQSGLDIT------LDIA-----TRASTVFLS-HHSERVTSLCLPNNVVLK-- 939 (1129)
Q Consensus 875 VG~G~Sg~eiA~~la~~~-~~V~vv~~~~~~~~~~------~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~V~~~-- 939 (1129)
||+|++|+|+|..+.+.+ ++|++++..+..+... +.+. ..+...... ...........+..|.-.
T Consensus 289 iGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~ 368 (485)
T TIGR01317 289 IGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDE 368 (485)
T ss_pred ECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCC
Confidence 999999999988877765 6899997755432110 0000 000000000 000000000000000000
Q ss_pred CCeeEEe---------CCc---EEecCC--cEeeccEEEEccCcc-CcCCCCCCCCCeeecCCcccccccceeecCCCCc
Q psy12350 940 PDVAELT---------PTG---VRFQDG--SYEQVDIILCCTGYS-NHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTM 1004 (1129)
Q Consensus 940 ~~i~~v~---------~~~---V~~~dG--~~~~~D~VI~aTG~~-~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l 1004 (1129)
..+..+. +++ .....| .++++|.||+|+|.. ++.+++.. .|++++.++..........++.|+|
T Consensus 369 g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~-~gl~~~~~G~i~~~~~~~~Ts~~gV 447 (485)
T TIGR01317 369 GKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDD-FGVKKTRRGNISAGYDDYSTSIPGV 447 (485)
T ss_pred CeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccc-cCcccCCCCCEEecCCCceECCCCE
Confidence 0121111 111 111122 258999999999996 77777764 6777655443333334456789999
Q ss_pred EEEccccccc-hhHHHHHHHHHHHHHH
Q psy12350 1005 FILGVPRHTL-LFNLFDLQVRLFQQLM 1030 (1129)
Q Consensus 1005 ~~iG~~~~~~-~~~~~e~qa~~~a~~l 1030 (1129)
|++|++..+. ....+..|++.+|..+
T Consensus 448 fAaGD~~~g~~~~~~Av~~G~~AA~~i 474 (485)
T TIGR01317 448 FAAGDCRRGQSLIVWAINEGRKAAAAV 474 (485)
T ss_pred EEeeccCCCcHHHHHHHHHHHHHHHHH
Confidence 9999987543 4456777777776654
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=142.86 Aligned_cols=264 Identities=14% Similarity=0.239 Sum_probs=161.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+||||||||-+||.+.++ .|.+.-++ .+..||+..-+ .-. -.|-.-
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaAR--KGiRTGl~--aerfGGQvldT--------------~~I-----------ENfIsv 260 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAAR--KGIRTGLV--AERFGGQVLDT--------------MGI-----------ENFISV 260 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHh--hcchhhhh--hhhhCCeeccc--------------cch-----------hheecc
Confidence 46899999999999999999999 45664443 13478887620 000 111111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
| .....++..-|+...+++++ .+.--.+.+++.+.....+-.+++. .++ ....-. .+|+|
T Consensus 261 ~--------~teGpkl~~ale~Hv~~Y~v--Dimn~qra~~l~~a~~~~~l~ev~l---~nG--avLkak-----tvIls 320 (520)
T COG3634 261 P--------ETEGPKLAAALEAHVKQYDV--DVMNLQRASKLEPAAVEGGLIEVEL---ANG--AVLKAR-----TVILA 320 (520)
T ss_pred c--------cccchHHHHHHHHHHhhcCc--hhhhhhhhhcceecCCCCccEEEEe---cCC--ceeccc-----eEEEe
Confidence 1 22455788888888888876 4444445555554221111122221 222 222233 69999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| .+-+-..+||+.+..-+|. .| |- .+..++ ++
T Consensus 321 tG--ArWRn~nvPGE~e~rnKGV------------------ay----CP---------------------HCDGPL--F~ 353 (520)
T COG3634 321 TG--ARWRNMNVPGEDEYRNKGV------------------AY----CP---------------------HCDGPL--FK 353 (520)
T ss_pred cC--cchhcCCCCchHHHhhCCe------------------ee----CC---------------------CCCCcc--cC
Confidence 99 4445566777554443332 01 10 122333 45
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc--------cCCC-CeEEcCCceEEcCCc--
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL--------RFPN-NVVKKPDIAELTPTG-- 316 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~--------~~~~-~i~~~~~v~~~~~~~-- 316 (1129)
+|++.| ||||+||+|.|..|+...++||+.+-.+.+..- .+++ .|..+..-+++.+++
T Consensus 354 gK~VAV-----------IGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~k 422 (520)
T COG3634 354 GKRVAV-----------IGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQDKLRSLPNVTIITNAQTTEVKGDGDK 422 (520)
T ss_pred CceEEE-----------ECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHHHHHhcCCCcEEEecceeeEEecCCce
Confidence 777777 699999999999999999999999877655321 1222 456677778887763
Q ss_pred ---eEEcC---CC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc
Q psy12350 317 ---VRFQD---GS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP 381 (1129)
Q Consensus 317 ---v~~~d---g~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~ 381 (1129)
+...| |+ .++-+-|++-.|.-|+..||+... ..++..-.-..++ =+++.|++|..|..-..|
T Consensus 423 V~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~v--el~~rGEIivD~~-g~TsvpGvFAAGD~T~~~ 492 (520)
T COG3634 423 VTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAV--ELNRRGEIIVDAR-GETNVPGVFAAGDCTTVP 492 (520)
T ss_pred ecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchh--hcCcCccEEEecC-CCcCCCceeecCcccCCc
Confidence 34433 43 347889999999999999998643 3322221111111 136789999999875443
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=168.47 Aligned_cols=258 Identities=18% Similarity=0.193 Sum_probs=144.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
-.++|||+|++|+++|..|.+.| ++|+|||+.+..||.+.+. +|... ....+.......+..+ +..+
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~~G--~~v~vie~~~~~gG~~~~~---------i~~~~-~~~~~~~~~~~~~~~~-gv~~ 350 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATMG--YEVTVYESLSKPGGVMRYG---------IPSYR-LPDEALDKDIAFIEAL-GVKI 350 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCceEeec---------CCccc-CCHHHHHHHHHHHHHC-CcEE
Confidence 45789999999999999999999 9999999999999987642 21110 0000000000000000 0000
Q ss_pred --CCCCCCC-------CCChhhhhhccCC-CCCCCCCCCCCCCCcEEeeccCCC---------C-CCCCCCeEEEEcCCc
Q psy12350 820 --KGNADKS-------YIGAKDVLENYNH-PIYPEFKGKDMCQIPILHSRDYRT---------P-EPFAGKQAVVVGSGQ 879 (1129)
Q Consensus 820 --~~~~~~~-------~~~~~~v~~~~~~-P~~P~i~G~~~f~g~~~hs~~~~~---------~-~~~~gk~VvVVG~G~ 879 (1129)
...-... ......++.+|+. |+.+++||.+. ..++++.++.. . ....+|+|+|||||.
T Consensus 351 ~~~~~v~~~~~~~~~~~~yD~vilAtGa~~~r~l~i~G~~~--~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~ 428 (604)
T PRK13984 351 HLNTRVGKDIPLEELREKHDAVFLSTGFTLGRSTRIPGTDH--PDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGN 428 (604)
T ss_pred ECCCEeCCcCCHHHHHhcCCEEEEEcCcCCCccCCCCCcCC--cCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCch
Confidence 0000000 0112223338875 68889999753 22444333211 1 123479999999999
Q ss_pred cHHHHHHHHHhcCC------EEEEEec--CCCCccchhh-hhccccEEEEecCCccccccCCCCCeEEcCC--eeEEe--
Q psy12350 880 SGLDITLDIATTGK------QAVVVGS--GQSGLDITLD-IATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELT-- 946 (1129)
Q Consensus 880 Sg~eiA~~la~~~~------~V~vv~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~-- 946 (1129)
+|+|+|..+++.++ +|+++.. ....++.... +.... ..+|++... +.++.
T Consensus 429 ~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e~~~~~-----------------~~GV~i~~~~~~~~i~~~ 491 (604)
T PRK13984 429 VAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEEGL-----------------EEGVVIYPGWGPMEVVIE 491 (604)
T ss_pred HHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHHHHHHHH-----------------HcCCEEEeCCCCEEEEcc
Confidence 99999999998753 7887632 1111111110 00000 012222111 11111
Q ss_pred -----------------CCc---EEe--cCCcEeeccEEEEccCccCcCCCCCCCC--CeeecCCcccccccceeecCCC
Q psy12350 947 -----------------PTG---VRF--QDGSYEQVDIILCCTGYSNHYPFLHESC--GIKVVNKNVQPLYKHTINIEHP 1002 (1129)
Q Consensus 947 -----------------~~~---V~~--~dG~~~~~D~VI~aTG~~~~~~fl~~~~--g~~~~~~~~~~ly~~~~~~~~p 1002 (1129)
+++ ... .+++++++|.||+|+|++++..+|..++ ++.+++.. ..+.. .+.++.|
T Consensus 492 ~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~-i~vd~-~~~Ts~~ 569 (604)
T PRK13984 492 NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGR-ILTNE-YGQTSIP 569 (604)
T ss_pred CCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCe-EEeCC-CCccCCC
Confidence 111 111 1223689999999999999988876433 24443322 22222 3456899
Q ss_pred CcEEEccccccchhHHHHHHHHHHHHHHc
Q psy12350 1003 TMFILGVPRHTLLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1003 ~l~~iG~~~~~~~~~~~e~qa~~~a~~l~ 1031 (1129)
+||++|++.....+..+..+++.+|..+.
T Consensus 570 gVfAaGD~~~~~~~v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 570 WLFAGGDIVHGPDIIHGVADGYWAAEGID 598 (604)
T ss_pred CEEEecCcCCchHHHHHHHHHHHHHHHHH
Confidence 99999999876555667788888877653
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-13 Score=167.69 Aligned_cols=261 Identities=16% Similarity=0.168 Sum_probs=146.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccc-cccccccc-cC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTN-LPKDLMEL-CG 816 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~-~~~~~~~~-~~ 816 (1129)
...++|||+|++||++|..|.+.| ++|++||+.+.+||.|.+. +|... .+..... ....+..+ -+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G--~~Vtv~e~~~~~GG~l~~g---------ip~~~--l~~~~~~~~~~~~~~~Gv~ 376 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAG--VQVDVFDRHPEIGGMLTFG---------IPPFK--LDKTVLSQRREIFTAMGID 376 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcC--CcEEEEeCCCCCCCeeecc---------CCccc--CCHHHHHHHHHHHHHCCeE
Confidence 346799999999999999999999 9999999999999998852 32110 0000000 00000000 00
Q ss_pred CCCCCCCCCCCC-------ChhhhhhccCC-CCCCCCCCCCCCCCcEEeecc-----------CCC-----CCCCCCCeE
Q psy12350 817 YGHKGNADKSYI-------GAKDVLENYNH-PIYPEFKGKDMCQIPILHSRD-----------YRT-----PEPFAGKQA 872 (1129)
Q Consensus 817 ~~~~~~~~~~~~-------~~~~v~~~~~~-P~~P~i~G~~~f~g~~~hs~~-----------~~~-----~~~~~gk~V 872 (1129)
+.....-..... ....++.+|+. ++.+.+||.+. .| ++++.+ ... .....||+|
T Consensus 377 ~~~~~~v~~~~~~~~l~~~~DaV~latGa~~~~~~~i~g~~~-~g-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~v 454 (639)
T PRK12809 377 FHLNCEIGRDITFSDLTSEYDAVFIGVGTYGMMRADLPHEDA-PG-VIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRV 454 (639)
T ss_pred EEcCCccCCcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCcc-CC-cEeHHHHHHHHHHhhccCccccccccccCCCCeE
Confidence 000000000000 01122237765 44577888653 23 333211 111 123468999
Q ss_pred EEEcCCccHHHHHHHHHhcC-CEEEEEecCCCC-ccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEe--
Q psy12350 873 VVVGSGQSGLDITLDIATTG-KQAVVVGSGQSG-LDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELT-- 946 (1129)
Q Consensus 873 vVVG~G~Sg~eiA~~la~~~-~~V~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~-- 946 (1129)
+|||+|.+|+|+|..+.+.| ++||++.+.... ++..+.....+ ...+|++... +.++.
T Consensus 455 vViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~~a----------------~~eGv~~~~~~~~~~i~~~ 518 (639)
T PRK12809 455 VVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNA----------------REEGVEFQFNVQPQYIACD 518 (639)
T ss_pred EEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHH----------------HHcCCeEEeccCCEEEEEC
Confidence 99999999999999988887 589999764321 11111000000 0112222221 33332
Q ss_pred CCc----E------------------EecCCc--EeeccEEEEccCccCcC-CCCCCCCCeeecCCcccccc---cceee
Q psy12350 947 PTG----V------------------RFQDGS--YEQVDIILCCTGYSNHY-PFLHESCGIKVVNKNVQPLY---KHTIN 998 (1129)
Q Consensus 947 ~~~----V------------------~~~dG~--~~~~D~VI~aTG~~~~~-~fl~~~~g~~~~~~~~~~ly---~~~~~ 998 (1129)
+++ | ....|+ ++++|.||+|+|++++. .++.. +++++++++..... ...+.
T Consensus 519 ~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~-~gl~~~~~G~i~vd~~~~~~~~ 597 (639)
T PRK12809 519 EDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQG-SGIKLDKWGLIQTGDVGYLPTQ 597 (639)
T ss_pred CCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccc-cCcccCCCCCEEeCCCcccCcc
Confidence 111 1 111232 57999999999999974 45543 67777654432221 12355
Q ss_pred cCCCCcEEEccccccc-hhHHHHHHHHHHHHHHc
Q psy12350 999 IEHPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 999 ~~~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~ 1031 (1129)
++.|+||++|++..+. ....+-.|++.+|+.+.
T Consensus 598 Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~ 631 (639)
T PRK12809 598 THLKKVFAGGDAVHGADLVVTAMAAGRQAARDML 631 (639)
T ss_pred cCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 6899999999987653 45777888888777654
|
|
| >KOG0399|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.1e-13 Score=155.45 Aligned_cols=285 Identities=16% Similarity=0.225 Sum_probs=156.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
-++|+|||+|||||+||-.|-+ .|+.|+|+||.+.+||+..|.....
T Consensus 1785 g~~vaiigsgpaglaaadqlnk--~gh~v~vyer~dr~ggll~ygipnm------------------------------- 1831 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNK--AGHTVTVYERSDRVGGLLMYGIPNM------------------------------- 1831 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhh--cCcEEEEEEecCCcCceeeecCCcc-------------------------------
Confidence 4899999999999999999999 7799999999999999999721100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
..+. .+.+.--+...+-|+ ++..|+++-+- +.. + .-...+| +||+|+
T Consensus 1832 --------kldk-~vv~rrv~ll~~egi--~f~tn~eigk~-----------vs~-----d-~l~~~~d-----aiv~a~ 1878 (2142)
T KOG0399|consen 1832 --------KLDK-FVVQRRVDLLEQEGI--RFVTNTEIGKH-----------VSL-----D-ELKKEND-----AIVLAT 1878 (2142)
T ss_pred --------chhH-HHHHHHHHHHHhhCc--eEEeecccccc-----------ccH-----H-HHhhccC-----eEEEEe
Confidence 1111 244444455555565 66667766321 111 1 1122478 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCccccccccc-chhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRS-EKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|. ..|+-.++||- +. +|+|. ..|+..-. ..++...+ .......+
T Consensus 1879 gs-t~prdlpv~gr---d~---------------kgv~fame~l~~nt----------k~lld~~~------d~~~~~~~ 1923 (2142)
T KOG0399|consen 1879 GS-TTPRDLPVPGR---DL---------------KGVHFAMEFLEKNT----------KSLLDSVL------DGNYISAK 1923 (2142)
T ss_pred CC-CCCcCCCCCCc---cc---------------cccHHHHHHHHHhH----------Hhhhcccc------ccceeccC
Confidence 94 45666667662 12 22221 11211000 00000000 11111223
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccc-cEEEEcc--------ccCCcccccCCC-----------------
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA-TTVFLSH--------HSEHVKKLRFPN----------------- 301 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~-~~V~lv~--------r~~~~~~~~~~~----------------- 301 (1129)
+|+|+| ||||.+|-|+...-.+.| +.|.-.+ |.+......+|.
T Consensus 1924 gkkviv-----------igggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~ 1992 (2142)
T KOG0399|consen 1924 GKKVIV-----------IGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGS 1992 (2142)
T ss_pred CCeEEE-----------ECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCC
Confidence 455544 799999999988766665 4443322 111111111111
Q ss_pred -----CeEE-------cCCceEEc---------CCc----eEEcC-CCEeecCEEEEcccccccCCCCCCCCCeEeecCc
Q psy12350 302 -----NVVK-------KPDIAELT---------PTG----VRFQD-GSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKN 355 (1129)
Q Consensus 302 -----~i~~-------~~~v~~~~---------~~~----v~~~d-g~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~ 355 (1129)
.|.. +..|+.++ +.+ +...+ .+.++||.||+|.||-..-+-+-+.+++..+++.
T Consensus 1993 dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rs 2072 (2142)
T KOG0399|consen 1993 DPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRS 2072 (2142)
T ss_pred CcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccc
Confidence 0100 11122211 011 11111 1245999999999997665555555667766643
Q ss_pred c-cccccccccCCCCCeEEecccccccc--cccccceeeehhhccccccccccc
Q psy12350 356 V-QPLYKHLINIEHPSMCIIGYTYRYPF--LHESCGIKVVNKNVQPLYKHLINI 406 (1129)
Q Consensus 356 ~-~~l~~~~~~~~~p~l~~~G~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~ 406 (1129)
. .-.+.. |.++.+.+|..|..+..+- .=.++.+|-.|+-+...+.+.-.+
T Consensus 2073 ni~t~~~~-y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~vd~~~~~~t~l 2125 (2142)
T KOG0399|consen 2073 NILTPKDS-YSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQVDELMGGTTDL 2125 (2142)
T ss_pred cccCCCcc-ccccccceeecccccCCceEEEEEehhhhHHHHHHHHHhCCcccC
Confidence 2 334433 7788899999999876432 112356666666665555555544
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-13 Score=176.06 Aligned_cols=260 Identities=15% Similarity=0.114 Sum_probs=157.0
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccc----------cc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTN----------LP 808 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~----------~~ 808 (1129)
..+++|||+|++||++|..+.+.| ++|+|+|+++.+||.+...... ..|.+.. .....+... ..
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G--~~V~liD~~~~~GG~~~~~~~~---~~g~~~~-~~~~~~~~~l~~~~~v~v~~~ 236 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAG--ARVILVDEQPEAGGSLLSEAET---IDGKPAA-DWAAATVAELTAMPEVTLLPR 236 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCCCeeeccccc---cCCccHH-HHHHHHHHHHhcCCCcEEEcC
Confidence 468999999999999999999999 9999999999999988753210 0011100 000000000 00
Q ss_pred cccccccC-------------CCCCCC-----CCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEee---ccCCC-CCC
Q psy12350 809 KDLMELCG-------------YGHKGN-----ADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHS---RDYRT-PEP 866 (1129)
Q Consensus 809 ~~~~~~~~-------------~~~~~~-----~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs---~~~~~-~~~ 866 (1129)
.....+.+ ++.... ....+..+..++.+|+.|+.|++||.+. .| ++.. ..+.. ...
T Consensus 237 t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~-pg-V~~~~~~~~~l~~~~~ 314 (985)
T TIGR01372 237 TTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDR-PG-VMLAGAARTYLNRYGV 314 (985)
T ss_pred CEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCC-CC-cEEchHHHHHHHhhCc
Confidence 00000000 000000 0001233445566999999999999754 22 3332 12211 123
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhcCC-EEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--ee
Q psy12350 867 FAGKQAVVVGSGQSGLDITLDIATTGK-QAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VA 943 (1129)
Q Consensus 867 ~~gk~VvVVG~G~Sg~eiA~~la~~~~-~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~ 943 (1129)
..||+|+|||+|.+|+|+|..|++.|. .|++++..+..... +. ..+. ..+|+++.+ +.
T Consensus 315 ~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~~~---l~-------------~~L~---~~GV~i~~~~~v~ 375 (985)
T TIGR01372 315 APGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVSPE---AR-------------AEAR---ELGIEVLTGHVVA 375 (985)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchhHH---HH-------------HHHH---HcCCEEEcCCeEE
Confidence 468999999999999999999999994 57888764322110 00 0010 125666554 66
Q ss_pred EEeCC----cEEec----CCcEeeccEEEEccCccCcCCCCCCCCCee--ecCCcccccccceeecCCCCcEEEcccccc
Q psy12350 944 ELTPT----GVRFQ----DGSYEQVDIILCCTGYSNHYPFLHESCGIK--VVNKNVQPLYKHTINIEHPTMFILGVPRHT 1013 (1129)
Q Consensus 944 ~v~~~----~V~~~----dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~--~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~ 1013 (1129)
++.++ +|++. +++++++|.|++++|++|+..++.. +|.. .++.. ..+ .-.++.|+||++|++...
T Consensus 376 ~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~-lg~~~~~~~~~--~~~--~~~t~v~gVyaaGD~~g~ 450 (985)
T TIGR01372 376 ATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQ-RGGKLAWDAAI--AAF--LPGDAVQGCILAGAANGL 450 (985)
T ss_pred EEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHh-cCCCeeecccc--Cce--ecCCCCCCeEEeeccCCc
Confidence 77553 35554 4567899999999999999876543 4433 33221 111 112468999999998876
Q ss_pred chhHHHHHHHHHHHHHH
Q psy12350 1014 LLFNLFDLQVRLFQQLM 1030 (1129)
Q Consensus 1014 ~~~~~~e~qa~~~a~~l 1030 (1129)
.....+..+++.++..+
T Consensus 451 ~~~~~A~~eG~~Aa~~i 467 (985)
T TIGR01372 451 FGLAAALADGAAAGAAA 467 (985)
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 66667788888777665
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >KOG2495|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=5e-14 Score=151.60 Aligned_cols=271 Identities=13% Similarity=0.111 Sum_probs=165.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCC-CccccccCccc-----ccccccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGL-PVHSSMYKSLK-----TNLPKDLME 813 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~-p~~~~~y~~~~-----~~~~~~~~~ 813 (1129)
-.++|+|.|++|.+.++.|-... .+|+|+..++.+==+|... .+.+ |. ..+| +-+..+ .+-.....+
T Consensus 56 k~vVVLGsGW~a~S~lk~ldts~--YdV~vVSPRnyFlFTPLLp---S~~v-GTve~rS-IvEPIr~i~r~k~~~~~y~e 128 (491)
T KOG2495|consen 56 KRVVVLGSGWGAISLLKKLDTSL--YDVTVVSPRNYFLFTPLLP---STTV-GTVELRS-IVEPIRAIARKKNGEVKYLE 128 (491)
T ss_pred ceEEEEcCchHHHHHHHhccccc--cceEEeccccceEEeeccC---Cccc-cceeehh-hhhhHHHHhhccCCCceEEe
Confidence 35689999999999999998777 9999999998876666632 1111 10 0000 000000 000000000
Q ss_pred ccCCCCCCC-----------CC----CCCCChhhhhhccCCCCCCCCCCCCC---CCCcEEeeccCCC------------
Q psy12350 814 LCGYGHKGN-----------AD----KSYIGAKDVLENYNHPIYPEFKGKDM---CQIPILHSRDYRT------------ 863 (1129)
Q Consensus 814 ~~~~~~~~~-----------~~----~~~~~~~~v~~~~~~P~~P~i~G~~~---f~g~~~hs~~~~~------------ 863 (1129)
-.-+..+++ .. -.+...--|.++|..|+.+.+||..+ |--.+-|+.+.+.
T Consensus 129 Aec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~ 208 (491)
T KOG2495|consen 129 AECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELP 208 (491)
T ss_pred cccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcC
Confidence 000001110 00 01111223344999999999999876 2223333333311
Q ss_pred ----CCCCCCCeEEEEcCCccHHHHHHHHHhc--------------CCEEEEEecCCCCccchh-hhhccccEEEEecCC
Q psy12350 864 ----PEPFAGKQAVVVGSGQSGLDITLDIATT--------------GKQAVVVGSGQSGLDITL-DIATRASTVFLSHHS 924 (1129)
Q Consensus 864 ----~~~~~gk~VvVVG~G~Sg~eiA~~la~~--------------~~~V~vv~~~~~~~~~~~-~~~~~~~~~~~~~~~ 924 (1129)
++.-+--++||||||++|+|+|.||+.. --+||+++..+..++|.. .+..++...+..
T Consensus 209 ~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~--- 285 (491)
T KOG2495|consen 209 GLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVR--- 285 (491)
T ss_pred CCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhh---
Confidence 0111123799999999999999999863 236889988887777653 344444433322
Q ss_pred ccccccCCCCCeEEcCC--eeEEeCCcEEecCC----cEeeccEEEEccCccCcCCCCCCCCCeeecCCc--ccccccce
Q psy12350 925 ERVTSLCLPNNVVLKPD--VAELTPTGVRFQDG----SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKN--VQPLYKHT 996 (1129)
Q Consensus 925 ~~~~~~~~~~~V~~~~~--i~~v~~~~V~~~dG----~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~--~~~ly~~~ 996 (1129)
.+|++..+ ++.++++.++.+++ ++++.-.+||+||..+. |+... +...+++.. ..-....+
T Consensus 286 ---------~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~-lm~~i~e~~rr~L~vDE~L 354 (491)
T KOG2495|consen 286 ---------DGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKD-LMKQIDEQGRRGLAVDEWL 354 (491)
T ss_pred ---------ccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCc-hhhhh-HhhcCCccCceeeeeecee
Confidence 25666655 89999988877655 56899999999999986 54432 222222222 22344455
Q ss_pred eecCCCCcEEEccccc-c---chhHHHHHHHHHHHHHHc
Q psy12350 997 INIEHPTMFILGVPRH-T---LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 997 ~~~~~p~l~~iG~~~~-~---~~~~~~e~qa~~~a~~l~ 1031 (1129)
..++.+|||+||+|.. . +..++|+.|+.|+|++|.
T Consensus 355 rV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 355 RVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred eccCcCceEEeccccccccCccHHHHHHHHHHHHHHHHH
Confidence 6679999999999972 2 356899999999999987
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6e-13 Score=161.74 Aligned_cols=258 Identities=18% Similarity=0.203 Sum_probs=146.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccC-cccccccccccccc-CC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYK-SLKTNLPKDLMELC-GY 817 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~-~~~~~~~~~~~~~~-~~ 817 (1129)
..++|||+|++||.+|..|++.| ++|++||+.+.+||.+.+. +|.. .+. .........+..+. ++
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G--~~V~v~e~~~~~GG~l~~g---------ip~~--~~~~~~~~~~l~~~~~~Gv~~ 204 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMG--HAVTIFEAGPKLGGMMRYG---------IPAY--RLPREVLDAEIQRILDLGVEV 204 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCeeeec---------CCCc--cCCHHHHHHHHHHHHHCCCEE
Confidence 45789999999999999999999 8999999999999988742 2210 000 00000000000000 00
Q ss_pred CCCCCCCCCCC-------ChhhhhhccCCC-CCCCCCCCCCCCCcEEeeccCC-----CCCCCCCCeEEEEcCCccHHHH
Q psy12350 818 GHKGNADKSYI-------GAKDVLENYNHP-IYPEFKGKDMCQIPILHSRDYR-----TPEPFAGKQAVVVGSGQSGLDI 884 (1129)
Q Consensus 818 ~~~~~~~~~~~-------~~~~v~~~~~~P-~~P~i~G~~~f~g~~~hs~~~~-----~~~~~~gk~VvVVG~G~Sg~ei 884 (1129)
........... ....+..+|+.+ ..+.++|.+. .| +++...+. ......+|+|+|||+|.+|+|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~-~g-v~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~ 282 (564)
T PRK12771 205 RLGVRVGEDITLEQLEGEFDAVFVAIGAQLGKRLPIPGEDA-AG-VLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDA 282 (564)
T ss_pred EeCCEECCcCCHHHHHhhCCEEEEeeCCCCCCcCCCCCCcc-CC-cEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHH
Confidence 00000000000 011222266653 4456777542 23 33322221 1134568999999999999999
Q ss_pred HHHHHhcC-CEEEEEecCCCC-ccc-hhhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEeCCc----------
Q psy12350 885 TLDIATTG-KQAVVVGSGQSG-LDI-TLDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELTPTG---------- 949 (1129)
Q Consensus 885 A~~la~~~-~~V~vv~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~~~~---------- 949 (1129)
+..+.+.+ ++|+++.+.+.. ++. ...+... ...+|++.. .+.++..+.
T Consensus 283 a~~a~~lga~~v~ii~r~~~~~~~~~~~~~~~a-----------------~~~GVki~~~~~~~~i~~~~~~~~~v~~~~ 345 (564)
T PRK12771 283 ARTARRLGAEEVTIVYRRTREDMPAHDEEIEEA-----------------LREGVEINWLRTPVEIEGDENGATGLRVIT 345 (564)
T ss_pred HHHHHHcCCCEEEEEEecCcccCCCCHHHHHHH-----------------HHcCCEEEecCCcEEEEcCCCCEEEEEEEE
Confidence 99888887 778888764321 110 0000000 011233322 133332211
Q ss_pred EEe----c-------CC--cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-ch
Q psy12350 950 VRF----Q-------DG--SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-LL 1015 (1129)
Q Consensus 950 V~~----~-------dG--~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~ 1015 (1129)
+.+ . +| .++++|.||+|+|..++.+++.+..++. ++.+...+....+.++.||||++|++..+ ..
T Consensus 346 ~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~-~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~ 424 (564)
T PRK12771 346 VEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVE-VGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRT 424 (564)
T ss_pred EEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcc-cCCCCEEeCCCCccCCCCCEEeccCcCCCchH
Confidence 111 1 23 3579999999999999988887534565 44444444444567799999999998764 35
Q ss_pred hHHHHHHHHHHHHHH
Q psy12350 1016 FNLFDLQVRLFQQLM 1030 (1129)
Q Consensus 1016 ~~~~e~qa~~~a~~l 1030 (1129)
...+..|++.+|..+
T Consensus 425 v~~Av~~G~~aA~~i 439 (564)
T PRK12771 425 VTTAIGHGKKAARNI 439 (564)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777887777654
|
|
| >KOG0404|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-13 Score=133.86 Aligned_cols=251 Identities=16% Similarity=0.152 Sum_probs=155.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcc---cC-CcCcccccC----CCCCCCCCCCCccccccCcccccccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQ---AD-NIGGTWLYT----EHIGCDQYGLPVHSSMYKSLKTNLPK-- 809 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~---~~-~~GG~w~~~----~~~g~~~~g~p~~~~~y~~~~~~~~~-- 809 (1129)
-.++|||+||++..+|+++.+.. ++.++||- ++ ..||+.-.. .+||-.+ |+. ...+.+.++.+..+
T Consensus 9 e~v~IiGSGPAa~tAAiYaarae--lkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPd-gi~-G~~l~d~mrkqs~r~G 84 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAE--LKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPD-GIT-GPELMDKMRKQSERFG 84 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcc--cCceEEeeeeccCcCCCceeeeeeccccCCCCCc-ccc-cHHHHHHHHHHHHhhc
Confidence 36789999999999999999988 99999994 11 235554321 2333211 110 00011111111110
Q ss_pred --------ccccccCCCCCCC-CCCCCCChhhhhhccCCCCCCCCCCC-CC-CCCcEEeeccCCCCCC--CCCCeEEEEc
Q psy12350 810 --------DLMELCGYGHKGN-ADKSYIGAKDVLENYNHPIYPEFKGK-DM-CQIPILHSRDYRTPEP--FAGKQAVVVG 876 (1129)
Q Consensus 810 --------~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~P~~P~i~G~-~~-f~g~~~hs~~~~~~~~--~~gk~VvVVG 876 (1129)
....++.-||.-- +......+..++.+|...+...+||. +. |..+-+.++..++... |++|-.+|||
T Consensus 85 t~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIG 164 (322)
T KOG0404|consen 85 TEIITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIG 164 (322)
T ss_pred ceeeeeehhhccccCCCeEEEecCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEc
Confidence 0111122222110 01122233444559999998889987 43 7777788888888655 8999999999
Q ss_pred CCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----c
Q psy12350 877 SGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----G 949 (1129)
Q Consensus 877 ~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~ 949 (1129)
||.|++|-|..|.+.+++|+++.|.... ++++.+..+. ....+|++..+ +.+.-++ +
T Consensus 165 GGDsA~EEA~fLtkyaskVyii~Rrd~f---------RAs~~Mq~ra-------~~npnI~v~~nt~~~ea~gd~~~l~~ 228 (322)
T KOG0404|consen 165 GGDSAMEEALFLTKYASKVYIIHRRDHF---------RASKIMQQRA-------EKNPNIEVLYNTVAVEALGDGKLLNG 228 (322)
T ss_pred CcHHHHHHHHHHHhhccEEEEEEEhhhh---------hHHHHHHHHH-------hcCCCeEEEechhhhhhccCcccccc
Confidence 9999999999999999999999874321 1111111110 01225555544 2222111 1
Q ss_pred EE-----ecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccc
Q psy12350 950 VR-----FQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH 1012 (1129)
Q Consensus 950 V~-----~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~ 1012 (1129)
+. ..+-+.++++-++++.|-.|+..||+. .++++.++....-..+..+++|++|+.|+++.
T Consensus 229 l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g--qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD 294 (322)
T KOG0404|consen 229 LRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG--QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQD 294 (322)
T ss_pred eEEEecccCcccccccceeEEEecCCchhhHhcC--ceeeccCceEEeccCcccccccceeeccccch
Confidence 22 223345899999999999999999986 56777766555555777789999999999874
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.4e-13 Score=139.41 Aligned_cols=245 Identities=18% Similarity=0.246 Sum_probs=155.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCC-CCC------------ccccccCccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQY-GLP------------VHSSMYKSLKTN 806 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~-g~p------------~~~~~y~~~~~~ 806 (1129)
.+++|+|+||+|-++|.+..+.| .+.-++- +++||+-...-... .+ ++| .|..-|+--..|
T Consensus 212 yDVLvVGgGPAgaaAAiYaARKG--iRTGl~a--erfGGQvldT~~IE--NfIsv~~teGpkl~~ale~Hv~~Y~vDimn 285 (520)
T COG3634 212 YDVLVVGGGPAGAAAAIYAARKG--IRTGLVA--ERFGGQVLDTMGIE--NFISVPETEGPKLAAALEAHVKQYDVDVMN 285 (520)
T ss_pred ceEEEEcCCcchhHHHHHHHhhc--chhhhhh--hhhCCeeccccchh--heeccccccchHHHHHHHHHHhhcCchhhh
Confidence 46789999999999999999999 6655542 45888766331100 00 000 011112211111
Q ss_pred cccccccccCCCCC--C-------CCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcC
Q psy12350 807 LPKDLMELCGYGHK--G-------NADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGS 877 (1129)
Q Consensus 807 ~~~~~~~~~~~~~~--~-------~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~ 877 (1129)
..+... + .|.. . ........+..++++|.+++-.++||-++|+.+-+..|..++..-|+||+|+||||
T Consensus 286 ~qra~~-l--~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGG 362 (520)
T COG3634 286 LQRASK-L--EPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGG 362 (520)
T ss_pred hhhhhc-c--eecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECC
Confidence 111000 0 0000 0 00122233444555999999999999999988878888888888899999999999
Q ss_pred CccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc-----E
Q psy12350 878 GQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG-----V 950 (1129)
Q Consensus 878 G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~-----V 950 (1129)
|+||+|.|-+|+....+||+++..+.. .+..+ +.++. . .+ .||++..+ -+++.+++ +
T Consensus 363 GNSGvEAAIDLAGiv~hVtllEF~~eL---------kAD~V-Lq~kl----~-sl-~Nv~ii~na~Ttei~Gdg~kV~Gl 426 (520)
T COG3634 363 GNSGVEAAIDLAGIVEHVTLLEFAPEL---------KADAV-LQDKL----R-SL-PNVTIITNAQTTEVKGDGDKVTGL 426 (520)
T ss_pred CcchHHHHHhHHhhhheeeeeecchhh---------hhHHH-HHHHH----h-cC-CCcEEEecceeeEEecCCceecce
Confidence 999999999999999999999763311 11111 11110 0 01 27777766 56676653 4
Q ss_pred Eec---CCcE--eeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccc
Q psy12350 951 RFQ---DGSY--EQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH 1012 (1129)
Q Consensus 951 ~~~---dG~~--~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~ 1012 (1129)
... +|+. ++-+-|++-.|.-||+.||+.. ++++.++-.-+ ...-+++.|++|+.|++..
T Consensus 427 ~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~--vel~~rGEIiv-D~~g~TsvpGvFAAGD~T~ 490 (520)
T COG3634 427 EYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA--VELNRRGEIIV-DARGETNVPGVFAAGDCTT 490 (520)
T ss_pred EEEeccCCceeEEEeeeeEEEEecccChhHhhch--hhcCcCccEEE-ecCCCcCCCceeecCcccC
Confidence 443 3443 5788899999999999999874 45555443322 2223568999999999864
|
|
| >KOG1800|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-12 Score=135.28 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=41.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
.+++|||||+||||+.+|..|+++..+.+|+||||.+.++|+.+|
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 346999999999999999999997778999999999999999997
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-12 Score=155.51 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=35.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
..++|+|||||||||+||.+|++ .|++|+|||+.+..|+.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~--~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLR--SGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHh--CCCeEEEEccccccccc
Confidence 45899999999999999999999 67999999997765554
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-12 Score=148.35 Aligned_cols=106 Identities=22% Similarity=0.352 Sum_probs=76.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
-++|+|||||||||+||..|.+ .|++|++||+.+.+||...|. .+
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~--~G~~Vtv~e~~~~~GGll~yG------------------------------IP--- 167 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSR--AGHDVTVFERVALDGGLLLYG------------------------------IP--- 167 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHh--CCCeEEEeCCcCCCceeEEec------------------------------Cc---
Confidence 3899999999999999999999 679999999999999999961 11
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeee-eeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQ-PLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
.|....++.+...++.++.|+ .+++|++|- .+.. .. -...|| +|++|
T Consensus 168 -------~~kl~k~i~d~~i~~l~~~Gv--~~~~~~~vG~~it~------------~~------L~~e~D-----av~l~ 215 (457)
T COG0493 168 -------DFKLPKDILDRRLELLERSGV--EFKLNVRVGRDITL------------EE------LLKEYD-----AVFLA 215 (457)
T ss_pred -------hhhccchHHHHHHHHHHHcCe--EEEEcceECCcCCH------------HH------HHHhhC-----EEEEe
Confidence 222233566666667777774 888888874 2211 11 112379 99999
Q ss_pred cccCCCCCccccccc
Q psy12350 168 QGHVTLPSKAEMLAD 182 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~ 182 (1129)
||. ..|+..++||.
T Consensus 216 ~G~-~~~~~l~i~g~ 229 (457)
T COG0493 216 TGA-GKPRPLDIPGE 229 (457)
T ss_pred ccc-cCCCCCCCCCc
Confidence 994 45666667663
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-11 Score=132.66 Aligned_cols=145 Identities=18% Similarity=0.189 Sum_probs=86.4
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccc-cCCc------
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKT-NLPK------ 79 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~-~~~~------ 79 (1129)
+...|++.||-||+-|+.|..|.+.+ +.++..+||.+.. .+.+|..-.|+..+.+....|.+ ..|.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~-~~~~lFLerkp~F------~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFL 75 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHS-GLKSLFLERKPDF------SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFL 75 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhcccc-CcceEEEecCCCC------CcCCCcccCCccccccchhhhccccCCCCchHHH
Confidence 34689999999999999999988853 4789999998753 33333321121111111111111 1111
Q ss_pred -------cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCC-CceEEeccccCcc
Q psy12350 80 -------EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEH-PSMCIIGIPRDTV 151 (1129)
Q Consensus 80 -------~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~-~~~~~~~~~~~~~ 151 (1129)
.+++|-.+ ..-++.+.|+.+|++..|.++ +.++|+++|+.|... ..+. ....+.+ ...
T Consensus 76 NYL~~h~RLy~Fl~~------e~f~i~R~Ey~dY~~Waa~~l---~~~rfg~~V~~i~~~--~~d~~~~~~~~t---~~~ 141 (436)
T COG3486 76 NYLHEHGRLYEFLNY------ETFHIPRREYNDYCQWAASQL---PSLRFGEEVTDISSL--DGDAVVRLFVVT---ANG 141 (436)
T ss_pred HHHHHcchHhhhhhh------hcccccHHHHHHHHHHHHhhC---CccccCCeecccccc--CCcceeEEEEEc---CCC
Confidence 22222211 234778999999999988887 479999999977321 1111 1111221 111
Q ss_pred ceEEecceeeeEEEEecccCCCCCcccc
Q psy12350 152 GFYLFDLQVRFFLQLMQGHVTLPSKAEM 179 (1129)
Q Consensus 152 ~~~~~d~~~~~~lvvAtG~~~~p~~p~i 179 (1129)
. .|.++ .|||++| ..|.+|+.
T Consensus 142 ~--~y~ar---~lVlg~G--~~P~IP~~ 162 (436)
T COG3486 142 T--VYRAR---NLVLGVG--TQPYIPPC 162 (436)
T ss_pred c--EEEee---eEEEccC--CCcCCChH
Confidence 1 34433 8999999 89999863
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.8e-12 Score=145.59 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=82.9
Q ss_pred ccCccccccCCchhhHHHHHHh--hCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccc---cCcccccccccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTE--AGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSM---YKSLKTNLPKDLME 813 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~--~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~---y~~~~~~~~~~~~~ 813 (1129)
...++|||+||+|+.+|..|++ .| ++|+|||+.+.+||.+.+...|.. +..... +..+..+ ..+.-
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g--~~Vtv~E~~p~pgGlvr~gvaP~~-----~~~k~v~~~~~~~~~~--~~v~~ 96 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDG--ARVDIIERLPTPFGLVRSGVAPDH-----PETKNVTNQFSRVATD--DRVSF 96 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCC--CeEEEEecCCCCcceEeeccCCCc-----chhHHHHHHHHHHHHH--CCeEE
Confidence 4468999999999999999987 56 999999999999998885321210 000000 0000000 00000
Q ss_pred ccCCCCCCC----CCCCCCChhhhhhccCCC-CCCCCCCCCCCCCcEEeeccCC----------CC--CCCCCCeEEEEc
Q psy12350 814 LCGYGHKGN----ADKSYIGAKDVLENYNHP-IYPEFKGKDMCQIPILHSRDYR----------TP--EPFAGKQAVVVG 876 (1129)
Q Consensus 814 ~~~~~~~~~----~~~~~~~~~~v~~~~~~P-~~P~i~G~~~f~g~~~hs~~~~----------~~--~~~~gk~VvVVG 876 (1129)
+.+..+..+ ... ...+..++.+|+.+ +.+++||.+. ..++.+.++. .. ....||+|+|||
T Consensus 97 ~~nv~vg~dvtl~~L~-~~yDaVIlAtGa~~~~~l~IpG~d~--~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIG 173 (491)
T PLN02852 97 FGNVTLGRDVSLSELR-DLYHVVVLAYGAESDRRLGIPGEDL--PGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLG 173 (491)
T ss_pred EcCEEECccccHHHHh-hhCCEEEEecCCCCCCCCCCCCCCC--CCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEEC
Confidence 111111111 000 01123344488875 7788999653 2345444431 00 113589999999
Q ss_pred CCccHHHHHHHHHhc
Q psy12350 877 SGQSGLDITLDIATT 891 (1129)
Q Consensus 877 ~G~Sg~eiA~~la~~ 891 (1129)
+|++|+|+|..|++.
T Consensus 174 gGnvAlD~Ar~L~~~ 188 (491)
T PLN02852 174 QGNVALDCARILLRP 188 (491)
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999998774
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-12 Score=147.69 Aligned_cols=259 Identities=20% Similarity=0.288 Sum_probs=154.5
Q ss_pred ccccccCCchhhHHHHHHhhCC-CcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCc------cccccccccccc
Q psy12350 742 NIVDRHGPGGLTATKRLTEAGN-GFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKS------LKTNLPKDLMEL 814 (1129)
Q Consensus 742 ~~iiG~G~~gl~~a~~l~~~g~-~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~------~~~~~~~~~~~~ 814 (1129)
++|||.|++|..+..++++..+ .+++++|-.++++. |++ ..-++..+. ...+.. ..++-
T Consensus 6 lvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n----Y~R---------i~Ls~vl~~~~~~edi~l~~~-dwy~~ 71 (793)
T COG1251 6 LVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN----YNR---------ILLSSVLAGEKTAEDISLNRN-DWYEE 71 (793)
T ss_pred EEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc----ccc---------eeeccccCCCccHHHHhccch-hhHHH
Confidence 4799999999999999988554 37899998776532 221 101111111 000000 00000
Q ss_pred cCC------C----CCC------CCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCC-----CCCCeEE
Q psy12350 815 CGY------G----HKG------NADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEP-----FAGKQAV 873 (1129)
Q Consensus 815 ~~~------~----~~~------~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~-----~~gk~Vv 873 (1129)
.+. + .+. +.........-++++||.|.+|++||.+.+. ++--.++.+.+. -..++-+
T Consensus 72 ~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~--v~~~R~i~D~~am~~~ar~~~~av 149 (793)
T COG1251 72 NGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPG--VFVYRTIDDVEAMLDCARNKKKAV 149 (793)
T ss_pred cCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccCCCCCCCCC--eeEEecHHHHHHHHHHHhccCCcE
Confidence 000 0 000 0011112223344499999999999987643 333333332211 1346689
Q ss_pred EEcCCccHHHHHHHHHhcCCEEEEEecCCCCccch--hhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEe---
Q psy12350 874 VVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDIT--LDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELT--- 946 (1129)
Q Consensus 874 VVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~--- 946 (1129)
|||||.-|+|.|..|.+.|-+|+|++..+.+.... +.-....++.+ . ..++++..+ .+++.
T Consensus 150 VIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~l-e-----------~~Gi~~~l~~~t~ei~g~~ 217 (793)
T COG1251 150 VIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKL-E-----------DLGIKVLLEKNTEEIVGED 217 (793)
T ss_pred EEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHH-H-----------hhcceeecccchhhhhcCc
Confidence 99999999999999999999999998766543211 10000000000 0 012333222 22222
Q ss_pred -CCcEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccc------cchhHHH
Q psy12350 947 -PTGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH------TLLFNLF 1019 (1129)
Q Consensus 947 -~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~------~~~~~~~ 1019 (1129)
..++.|+||+.+++|.||+|+|++|+..+- .+.|+..+...+.+.|.++ ++|+||++|-+.. +..+|..
T Consensus 218 ~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela-~~aGlavnrGIvvnd~mqT---sdpdIYAvGEcae~~g~~yGLVaP~y 293 (793)
T COG1251 218 KVEGVRFADGTEIPADLVVMAVGIRPNDELA-KEAGLAVNRGIVVNDYMQT---SDPDIYAVGECAEHRGKVYGLVAPLY 293 (793)
T ss_pred ceeeEeecCCCcccceeEEEecccccccHhH-HhcCcCcCCCeeecccccc---cCCCeeehhhHHHhcCccceehhHHH
Confidence 245999999999999999999999997644 4478888775544555554 8999999998753 1234555
Q ss_pred HHHHHHHHHHHcCC
Q psy12350 1020 DLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1020 e~qa~~~a~~l~g~ 1033 (1129)
| ||+.+|..+.|.
T Consensus 294 e-q~~v~a~hl~~~ 306 (793)
T COG1251 294 E-QAKVLADHLCGG 306 (793)
T ss_pred H-HHHHHHHHhccC
Confidence 4 799999988865
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-11 Score=145.38 Aligned_cols=117 Identities=14% Similarity=0.187 Sum_probs=83.7
Q ss_pred CCCCCCcccchhhhcccccEEEEccccCCcccccC-CC--------------CeEEcCCceEEcCCc-------eEEcCC
Q psy12350 265 AANGPSGLDITHDISTEATTVFLSHHSEHVKKLRF-PN--------------NVVKKPDIAELTPTG-------VRFQDG 322 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~-~~--------------~i~~~~~v~~~~~~~-------v~~~dg 322 (1129)
+|+|+.|+|+|..++..|.+|++++..++++.... +. ++..+..+.+++.+. +...++
T Consensus 142 vG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 221 (415)
T COG0446 142 VGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDG 221 (415)
T ss_pred ECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCC
Confidence 79999999999999999999999999988766543 22 356677888887642 477788
Q ss_pred CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc
Q psy12350 323 SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP 381 (1129)
Q Consensus 323 ~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~ 381 (1129)
..+++|.+++++|.+++..+..+...........+...+.+....++++|.+|.....+
T Consensus 222 ~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~ 280 (415)
T COG0446 222 EEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIP 280 (415)
T ss_pred cEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeee
Confidence 89999999999999998555543320122223333333333322578899999875543
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-11 Score=137.92 Aligned_cols=44 Identities=27% Similarity=0.446 Sum_probs=38.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..++|+|||||||||+||++|+.. .+++|+||||.+.+||+++|
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCccEEEE
Confidence 457999999999999999987532 47999999999999999996
|
|
| >KOG0399|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-10 Score=134.34 Aligned_cols=290 Identities=19% Similarity=0.233 Sum_probs=152.2
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYG 818 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~ 818 (1129)
.-.++|||+||+||+||.+|-+.| +.|+|+||.+++||...| |||--. .+....+....++.-....
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~g--h~v~vyer~dr~ggll~y---------gipnmk--ldk~vv~rrv~ll~~egi~ 1851 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAG--HTVTVYERSDRVGGLLMY---------GIPNMK--LDKFVVQRRVDLLEQEGIR 1851 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcC--cEEEEEEecCCcCceeee---------cCCccc--hhHHHHHHHHHHHHhhCce
Confidence 345899999999999999999999 999999999999999885 554210 1111111111111111111
Q ss_pred C--CCCCCCCCCChhh--------hhhccC-CCCCCCCCCCCCCCC-----cEEeecc--C------CCCCCCCCCeEEE
Q psy12350 819 H--KGNADKSYIGAKD--------VLENYN-HPIYPEFKGKDMCQI-----PILHSRD--Y------RTPEPFAGKQAVV 874 (1129)
Q Consensus 819 ~--~~~~~~~~~~~~~--------v~~~~~-~P~~P~i~G~~~f~g-----~~~hs~~--~------~~~~~~~gk~VvV 874 (1129)
+ ..+ .....+-.+ |+.+|+ .|+-.++||-+. +| ..+|... . ....+.+||+|+|
T Consensus 1852 f~tn~e-igk~vs~d~l~~~~daiv~a~gst~prdlpv~grd~-kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkviv 1929 (2142)
T KOG0399|consen 1852 FVTNTE-IGKHVSLDELKKENDAIVLATGSTTPRDLPVPGRDL-KGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIV 1929 (2142)
T ss_pred EEeecc-ccccccHHHHhhccCeEEEEeCCCCCcCCCCCCccc-cccHHHHHHHHHhHHhhhccccccceeccCCCeEEE
Confidence 1 111 111122222 222554 688888999764 22 1222110 0 1113457999999
Q ss_pred EcCCccHHHHHHHHHhcCC-EEEEEecCCCCcc---chhhhhcc--ccEEEEecC-----C------ccccccCC----C
Q psy12350 875 VGSGQSGLDITLDIATTGK-QAVVVGSGQSGLD---ITLDIATR--ASTVFLSHH-----S------ERVTSLCL----P 933 (1129)
Q Consensus 875 VG~G~Sg~eiA~~la~~~~-~V~vv~~~~~~~~---~~~~~~~~--~~~~~~~~~-----~------~~~~~~~~----~ 933 (1129)
||||.+|.|+...-.++|+ +|.-++--+.+-+ ..-++.++ ..++-..+. + ...+...+ .
T Consensus 1930 igggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~ 2009 (2142)
T KOG0399|consen 1930 IGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDN 2009 (2142)
T ss_pred ECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCC
Confidence 9999999999877777765 4443432111100 00001111 111111110 0 00000000 1
Q ss_pred CCeEEcCCeeEE----eCCc----EEecCCc-EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCc
Q psy12350 934 NNVVLKPDVAEL----TPTG----VRFQDGS-YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTM 1004 (1129)
Q Consensus 934 ~~V~~~~~i~~v----~~~~----V~~~dG~-~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l 1004 (1129)
++|+-.. +.++ ++.| ++..+.+ .+++|.||+|.||----+-+.+.++++.+.+.....-...+.++.+.+
T Consensus 2010 g~v~gl~-~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~v 2088 (2142)
T KOG0399|consen 2010 GNVTGLE-TVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKV 2088 (2142)
T ss_pred CceeeEE-EEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccce
Confidence 1221111 1222 1222 2222333 369999999999976434344445566554433322223367789999
Q ss_pred EEEccccccc---hh--HHHHHHHHHHHHHHcCCCCCCCHHHHHH
Q psy12350 1005 FILGVPRHTL---LF--NLFDLQVRLFQQLMQGHITLPSKEEMLA 1044 (1129)
Q Consensus 1005 ~~iG~~~~~~---~~--~~~e~qa~~~a~~l~g~~~lp~~~~~~~ 1044 (1129)
|+.|++..+. .| +.....|+-+-..+.|+..+|...-..+
T Consensus 2089 faagdcrrgqslvvwai~egrq~a~~vd~~~~~~t~l~~~ggiv~ 2133 (2142)
T KOG0399|consen 2089 FAAGDCRRGQSLVVWAIQEGRQAARQVDELMGGTTDLPGDGGIVQ 2133 (2142)
T ss_pred eecccccCCceEEEEEehhhhHHHHHHHHHhCCcccCCCCCchhh
Confidence 9999998652 33 4444555666666777777887654433
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8e-10 Score=127.52 Aligned_cols=274 Identities=20% Similarity=0.186 Sum_probs=138.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
..|+|||+||+||++|..|.+.| ++|++||+.+..||.-.| |||.... +.-......+.++-....+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G--~~Vtv~e~~~~~GGll~y---------GIP~~kl--~k~i~d~~i~~l~~~Gv~~ 190 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAG--HDVTVFERVALDGGLLLY---------GIPDFKL--PKDILDRRLELLERSGVEF 190 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCC--CeEEEeCCcCCCceeEEe---------cCchhhc--cchHHHHHHHHHHHcCeEE
Confidence 45689999999999999999999 999999999999998885 5553211 1000000000011011111
Q ss_pred CCCC-CCCCCChhhhhh--------cc-CCCCCCCCCCCCCCCCcEEeeccCC--------------CCCCCCCCeEEEE
Q psy12350 820 KGNA-DKSYIGAKDVLE--------NY-NHPIYPEFKGKDMCQIPILHSRDYR--------------TPEPFAGKQAVVV 875 (1129)
Q Consensus 820 ~~~~-~~~~~~~~~v~~--------~~-~~P~~P~i~G~~~f~g~~~hs~~~~--------------~~~~~~gk~VvVV 875 (1129)
.... ...-.+-+++++ +| ..|+..++||.+. ..+..+.+|. ......||+|+||
T Consensus 191 ~~~~~vG~~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~--~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVI 268 (457)
T COG0493 191 KLNVRVGRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDA--KGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVI 268 (457)
T ss_pred EEcceECCcCCHHHHHHhhCEEEEeccccCCCCCCCCCcCC--CcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEE
Confidence 1100 000112222222 33 4677778888763 2233333331 1122356999999
Q ss_pred cCCccHHHHHHHHHhcCC-EEEEEecCCCCccchhhhhccccEEEEe-cCCc--cc--------cccCCCCCeEEcCC--
Q psy12350 876 GSGQSGLDITLDIATTGK-QAVVVGSGQSGLDITLDIATRASTVFLS-HHSE--RV--------TSLCLPNNVVLKPD-- 941 (1129)
Q Consensus 876 G~G~Sg~eiA~~la~~~~-~V~vv~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~--------~~~~~~~~V~~~~~-- 941 (1129)
|+|.+++|++....++|+ +|+.+.+......+. .+..++....+. .... +. +...-.++|.-...
T Consensus 269 GgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~ 347 (457)
T COG0493 269 GGGDTAMDCAGTALRLGAKSVTCFYREDRDDETN-EWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGR 347 (457)
T ss_pred CCCCCHHHHHHHHhhcCCeEEEEeccccccccCC-cccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeeccc
Confidence 999999999988888876 777774221110110 001111100000 0000 00 00000112221100
Q ss_pred eeEE---eC----CcEEecCCc--EeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCCcEEEcccc
Q psy12350 942 VAEL---TP----TGVRFQDGS--YEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPR 1011 (1129)
Q Consensus 942 i~~v---~~----~~V~~~dG~--~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~ 1011 (1129)
+... .+ .-+.. .|+ .+++|.|+.|.|+.++..... ...++..+..+...+-.....++.|++|+-|+..
T Consensus 348 ~~~~~~~~~~~r~~p~~v-~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~ 426 (457)
T COG0493 348 VEPGEYVDGWGRRGPVGV-IGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAV 426 (457)
T ss_pred ccccCcccccccccCccc-cCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceec
Confidence 0000 00 00222 233 359999999999999855432 1123444443322222222256889999999987
Q ss_pred cc-chhHHHHHHHHHHHHHH
Q psy12350 1012 HT-LLFNLFDLQVRLFQQLM 1030 (1129)
Q Consensus 1012 ~~-~~~~~~e~qa~~~a~~l 1030 (1129)
.+ +..-.+..++|-+|+.+
T Consensus 427 ~g~~~vv~ai~eGr~aak~i 446 (457)
T COG0493 427 RGAALVVWAIAEGREAAKAI 446 (457)
T ss_pred cchhhhhhHHhhchHHHHhh
Confidence 64 33444555555555444
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=119.20 Aligned_cols=139 Identities=17% Similarity=0.233 Sum_probs=93.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC--------ceEecCCCCCCCCCCCCccCcccccccccCC--
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG--------GTWVYTEQTGRDQYGLPVHSSMYKSLKTNLP-- 78 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G--------G~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~-- 78 (1129)
.++|+|||||||||.||..+.+ .|.+|+|||+.+.+| |-|+.++... ++.+..+.|
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~--~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~------------~~~~ls~~p~~ 68 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAK--AGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA------------PDEFLSRNPGN 68 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhh--cCCEEEEEecCccccceeEecCCCCcccccccc------------HHHHHHhCCCc
Confidence 4799999999999999999999 779999999999885 6676655322 334444444
Q ss_pred -cccc-ccCCC--------------CCCC-CCCCCCC---CHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCC
Q psy12350 79 -KEIM-ELSGY--------------HHKG-HPDKSYI---AANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEH 138 (1129)
Q Consensus 79 -~~~~-~~~d~--------------~~~~-~~~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~ 138 (1129)
+.+. .++.| ++.. ...+-|| +.+++++-+..-+++.|+ .++++++|.++.+..
T Consensus 69 ~~fl~sal~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV--~i~~~~~v~~v~~~~----- 141 (408)
T COG2081 69 GHFLKSALARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGV--TIRTRSRVSSVEKDD----- 141 (408)
T ss_pred chHHHHHHHhCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCc--EEEecceEEeEEecC-----
Confidence 2111 11111 1111 1123455 477888888888888877 899999999998732
Q ss_pred CceEEeccccCccceEEecceeeeEEEEecccCCCCCc
Q psy12350 139 PSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVTLPSK 176 (1129)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG~~~~p~~ 176 (1129)
....+. ......+.+| .||||||.-|-|++
T Consensus 142 ~~f~l~---t~~g~~i~~d-----~lilAtGG~S~P~l 171 (408)
T COG2081 142 SGFRLD---TSSGETVKCD-----SLILATGGKSWPKL 171 (408)
T ss_pred ceEEEE---cCCCCEEEcc-----EEEEecCCcCCCCC
Confidence 112222 2222356788 99999997776654
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-09 Score=131.23 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=81.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcc---------cc------cCCC---C-CCCCCCCCcccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGT---------WL------YTEH---I-GCDQYGLPVHSSMY 800 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~---------w~------~~~~---~-g~~~~g~p~~~~~y 800 (1129)
..|+|||+||+|+++|..|.+.| ++|++||+.+..|+. |. +... + |...||||.. |
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~G--h~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R---~ 458 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRSG--HNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVR---W 458 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhCC--CeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcccc---c
Confidence 46799999999999999999999 999999987655443 11 1111 1 3445666621 1
Q ss_pred Ccccccccccc------ccc-cCCCCCCC----CCCCCCChhhhhhccC-CCCCCCCCCCCCCCCcEEeeccCCCC----
Q psy12350 801 KSLKTNLPKDL------MEL-CGYGHKGN----ADKSYIGAKDVLENYN-HPIYPEFKGKDMCQIPILHSRDYRTP---- 864 (1129)
Q Consensus 801 ~~~~~~~~~~~------~~~-~~~~~~~~----~~~~~~~~~~v~~~~~-~P~~P~i~G~~~f~g~~~hs~~~~~~---- 864 (1129)
..-.......+ ..| .+..+..+ .....-....++.+|+ .|+.+++||.+. ..++.+.++...
T Consensus 459 ~k~~l~~i~~il~~g~~v~~~~gv~lG~dit~edl~~~gyDAV~IATGA~kpr~L~IPGeda--~GV~sA~DfL~~l~~~ 536 (1028)
T PRK06567 459 DKNNLDILRLILERNNNFKYYDGVALDFNITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEA--KGVKTASDFLMTLQSG 536 (1028)
T ss_pred hHHHHHHHHHHHhcCCceEEECCeEECccCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccC--CCeEEHHHHHHHHhhc
Confidence 11000000000 000 01111110 0000111223334888 799999999764 335554443111
Q ss_pred --------CC-CCCCeEEEEcCCccHHHHHHHHH
Q psy12350 865 --------EP-FAGKQAVVVGSGQSGLDITLDIA 889 (1129)
Q Consensus 865 --------~~-~~gk~VvVVG~G~Sg~eiA~~la 889 (1129)
.+ ..|++|||||||++|+|+|....
T Consensus 537 ~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAl 570 (1028)
T PRK06567 537 GAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESL 570 (1028)
T ss_pred ccccccccCcccCCCCEEEEcCcHHHHHHHHHHH
Confidence 11 14789999999999999998554
|
|
| >KOG1346|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.3e-09 Score=114.54 Aligned_cols=137 Identities=12% Similarity=0.174 Sum_probs=86.1
Q ss_pred CCCCCCcccchhhhccc----ccEEEEccccCCcccccCCC---------------CeEEcCCceEEcCC----ceEEcC
Q psy12350 265 AANGPSGLDITHDISTE----ATTVFLSHHSEHVKKLRFPN---------------NVVKKPDIAELTPT----GVRFQD 321 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~----~~~V~lv~r~~~~~~~~~~~---------------~i~~~~~v~~~~~~----~v~~~d 321 (1129)
||+|..|-|+|+.|.+. |.+|+-+-.....+...+|+ ++..+..|.++... .+.++|
T Consensus 353 iGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~d 432 (659)
T KOG1346|consen 353 IGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSD 432 (659)
T ss_pred EcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecC
Confidence 79999999999998765 44666654333222222222 45556666666432 267889
Q ss_pred CCEeecCEEEEcccccccCCCCCCCCCeEeecCcc-cccccccccCCCCCeEEecccccccccccccceeeehhhccccc
Q psy12350 322 GSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNV-QPLYKHLINIEHPSMCIIGYTYRYPFLHESCGIKVVNKNVQPLY 400 (1129)
Q Consensus 322 g~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~-~~l~~~~~~~~~p~l~~~G~~~~~~~~~~~~~~~~~a~~~~~~~ 400 (1129)
|+++..|.|++|+|-.|+...... .++.+|...- ......+- --.|++..|....+ .......|-+-+|=.+..
T Consensus 433 G~~l~tD~vVvavG~ePN~ela~~-sgLeiD~~lGGfrvnaeL~--ar~NvwvAGdaacF--~D~~LGrRRVehhdhavv 507 (659)
T KOG1346|consen 433 GSELRTDLVVVAVGEEPNSELAEA-SGLEIDEKLGGFRVNAELK--ARENVWVAGDAACF--EDGVLGRRRVEHHDHAVV 507 (659)
T ss_pred CCeeeeeeEEEEecCCCchhhccc-ccceeecccCcEEeeheee--cccceeeecchhhh--hcccccceecccccccee
Confidence 999999999999999999988764 5677775431 11111111 12456666655433 222255666677777777
Q ss_pred cccccc
Q psy12350 401 KHLINI 406 (1129)
Q Consensus 401 ~~~~~~ 406 (1129)
+|+|--
T Consensus 508 SGRLAG 513 (659)
T KOG1346|consen 508 SGRLAG 513 (659)
T ss_pred eceecc
Confidence 777765
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-09 Score=123.59 Aligned_cols=151 Identities=21% Similarity=0.286 Sum_probs=76.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC--------ceEecCC-CCCCCCCCCC---ccCcccccccccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG--------GTWVYTE-QTGRDQYGLP---VHSSMYKSLKTNL 77 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G--------G~w~~~~-~~~~~~~~~~---~~~~~y~~l~~~~ 77 (1129)
+||+|||||||||.||..|++ .|.+|+|+||++.+| |-|+.++ +.....+... ....+++.+....
T Consensus 1 ydviIIGgGaAGl~aA~~aa~--~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~ 78 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAE--KGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS 78 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHH--TT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCC
Confidence 589999999999999999999 679999999999885 7888766 2221111000 0111222222222
Q ss_pred Ccccccc-CCC--CCCCC-CCCCCC---CHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCc
Q psy12350 78 PKEIMEL-SGY--HHKGH-PDKSYI---AANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDT 150 (1129)
Q Consensus 78 ~~~~~~~-~d~--~~~~~-~~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 150 (1129)
+.++..| .+. +.... ..+-|| ...++++-|...+++.++ .++++++|..+.+. +...+.+.. ..
T Consensus 79 ~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv--~i~~~~~V~~i~~~----~~~~f~v~~---~~ 149 (409)
T PF03486_consen 79 PEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGV--EIHFNTRVKSIEKK----EDGVFGVKT---KN 149 (409)
T ss_dssp HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT---EEE-S--EEEEEEE----TTEEEEEEE---TT
T ss_pred HHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCC--EEEeCCEeeeeeec----CCceeEeec---cC
Confidence 2222111 011 11101 112233 567888888888888877 89999999999762 122233332 13
Q ss_pred cceEEecceeeeEEEEecccCCCCCc
Q psy12350 151 VGFYLFDLQVRFFLQLMQGHVTLPSK 176 (1129)
Q Consensus 151 ~~~~~~d~~~~~~lvvAtG~~~~p~~ 176 (1129)
...+.+| +||||||..+-|..
T Consensus 150 ~~~~~a~-----~vILAtGG~S~p~~ 170 (409)
T PF03486_consen 150 GGEYEAD-----AVILATGGKSYPKT 170 (409)
T ss_dssp TEEEEES-----EEEE----SSSGGG
T ss_pred cccccCC-----EEEEecCCCCcccc
Confidence 3456788 99999996665543
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-08 Score=121.28 Aligned_cols=147 Identities=18% Similarity=0.257 Sum_probs=80.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCC-C-CCC--C---CCCC-ccCcccccccccCCccc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQ-T-GRD--Q---YGLP-VHSSMYKSLKTNLPKEI 81 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~-~-~~~--~---~~~~-~~~~~y~~l~~~~~~~~ 81 (1129)
++|+||||||+|+++|.+|.+.+...+|+|||++..+|.-+.|... . .+. + ...| .....++-+..+....
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~- 80 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH- 80 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH-
Confidence 5899999999999999999986666799999999989954444321 1 110 0 0000 0011111111100000
Q ss_pred cccCCCCCCC--CCCCCCCCHHHHHHHHHHHHHhc-------CCcceeEeceeeeeeccccccCCCCceEEeccccCccc
Q psy12350 82 MELSGYHHKG--HPDKSYIAANDVLEYLNDFADNF-------NLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVG 152 (1129)
Q Consensus 82 ~~~~d~~~~~--~~~~~~~~~~~~~~yl~~~~~~~-------~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (1129)
+..+..+. .....|+++..+-+|+++..+.+ |....++.+++|+.+++.. ++|.++. .+...
T Consensus 81 --~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~---~g~~V~t----~~gg~ 151 (534)
T PRK09897 81 --LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN---AGVMLAT----NQDLP 151 (534)
T ss_pred --HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC---CEEEEEE----CCCCe
Confidence 00000000 01235777777777776654433 2123566788899987632 2333321 11123
Q ss_pred eEEecceeeeEEEEecccC
Q psy12350 153 FYLFDLQVRFFLQLMQGHV 171 (1129)
Q Consensus 153 ~~~~d~~~~~~lvvAtG~~ 171 (1129)
...+| +||+|||+.
T Consensus 152 ~i~aD-----~VVLAtGh~ 165 (534)
T PRK09897 152 SETFD-----LAVIATGHV 165 (534)
T ss_pred EEEcC-----EEEECCCCC
Confidence 45688 999999964
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.3e-09 Score=121.97 Aligned_cols=269 Identities=16% Similarity=0.115 Sum_probs=151.0
Q ss_pred ccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccc---c-cccccc--
Q psy12350 742 NIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLP---K-DLMELC-- 815 (1129)
Q Consensus 742 ~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~---~-~~~~~~-- 815 (1129)
++|+|+|.+|+.+|..+++..++.+++++.++......- .+.. +.+......+..+....+ + ......
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 74 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYR----CPLS--LYVGGGIASLEDLRYPPRFNRATGIDVRTGT 74 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCC----Cccc--hHHhcccCCHHHhcccchhHHhhCCEEeeCC
Confidence 368999999999999999988778999888776432110 0000 000000000000000000 0 000000
Q ss_pred ---CCCCCCC----CCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCC-----CCeEEEEcCCccHHH
Q psy12350 816 ---GYGHKGN----ADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFA-----GKQAVVVGSGQSGLD 883 (1129)
Q Consensus 816 ---~~~~~~~----~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~-----gk~VvVVG~G~Sg~e 883 (1129)
....... ..........++.+|+.|..++ + .+...+++...+.+...++ .++|+|||+|..|++
T Consensus 75 ~v~~id~~~~~v~~~~g~~~yd~LvlatGa~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle 150 (415)
T COG0446 75 EVTSIDPENKVVLLDDGEIEYDYLVLATGARPRPPP--I--SDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLE 150 (415)
T ss_pred EEEEecCCCCEEEECCCcccccEEEEcCCCcccCCC--c--cccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHH
Confidence 0000000 0012222333444899998877 2 1122244444443332221 489999999999999
Q ss_pred HHHHHHhcCCEEEEEecCCCCccch--hhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEeCCc-------EEe
Q psy12350 884 ITLDIATTGKQAVVVGSGQSGLDIT--LDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELTPTG-------VRF 952 (1129)
Q Consensus 884 iA~~la~~~~~V~vv~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~~~~-------V~~ 952 (1129)
+|..+++.|.+|++++..+...... +.+.....+.+.. .+|+++. .+.+++.+. +..
T Consensus 151 ~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~------------~gi~~~~~~~~~~i~~~~~~~~~~~~~~ 218 (415)
T COG0446 151 AAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEK------------YGVELLLGTKVVGVEGKGNTLVVERVVG 218 (415)
T ss_pred HHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHH------------CCcEEEeCCceEEEEcccCcceeeEEEE
Confidence 9999999999999998876554332 2222211111111 1344433 366666532 577
Q ss_pred cCCcEeeccEEEEccCccCcCCCCCCCC-CeeecCCcccccccceeecCCCCcEEEcccccc-----------chhHHHH
Q psy12350 953 QDGSYEQVDIILCCTGYSNHYPFLHESC-GIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----------LLFNLFD 1020 (1129)
Q Consensus 953 ~dG~~~~~D~VI~aTG~~~~~~fl~~~~-g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----------~~~~~~e 1020 (1129)
.++..+++|.+++++|.+|+..+..... +....+.++ .+...+.....+++|++|++... ..+..+.
T Consensus 219 ~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i-~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~ 297 (415)
T COG0446 219 IDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAV-LVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAV 297 (415)
T ss_pred eCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCE-EEccccccCCCCCEEeccceEeeecccCCceeeeechhhHh
Confidence 8899999999999999999844333311 233333333 34444332258999999996421 2457888
Q ss_pred HHHHHHHHHHcCC
Q psy12350 1021 LQVRLFQQLMQGH 1033 (1129)
Q Consensus 1021 ~qa~~~a~~l~g~ 1033 (1129)
.|++.++..+.+.
T Consensus 298 ~~~~i~~~~~~~~ 310 (415)
T COG0446 298 AAGRIAAENIAGA 310 (415)
T ss_pred hhhHHHHHHhccc
Confidence 8888888888764
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.3e-09 Score=111.51 Aligned_cols=126 Identities=18% Similarity=0.262 Sum_probs=72.0
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCCC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHHK 90 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~~ 90 (1129)
||+|||||||||+||+.|++ .+.+|+|+|+.+..+.. ...++.......
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~--~~~~v~ii~~~~~~~~~------------------------~~~~~~~~~~~~----- 49 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR--PGAKVLIIEKSPGTPYN------------------------SGCIPSPLLVEI----- 49 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TTSEEEEESSSSHHHHH------------------------HSHHHHHHHHHH-----
T ss_pred CEEEEecHHHHHHHHHHHhc--CCCeEEEEecccccccc------------------------cccccccccccc-----
Confidence 79999999999999999998 77999999886532110 000111110000
Q ss_pred CCCCCCCCCHHHHHH----HHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 91 GHPDKSYIAANDVLE----YLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 91 ~~~~~~~~~~~~~~~----yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
......... .+.+..++.++ .++++++|.+++..........+.+.....+......|| +||+
T Consensus 50 ------~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~lvi 116 (201)
T PF07992_consen 50 ------APHRHEFLPARLFKLVDQLKNRGV--EIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYD-----YLVI 116 (201)
T ss_dssp ------HHHHHHHHHHHHGHHHHHHHHHTH--EEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEE-----EEEE
T ss_pred ------cccccccccccccccccccccceE--EEeeccccccccccccccccCcccceeeccCCceEecCC-----eeee
Confidence 000001110 11111233333 677788998887632100001222322234455678899 9999
Q ss_pred ecccCCCCCccccccc
Q psy12350 167 MQGHVTLPSKAEMLAD 182 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~ 182 (1129)
||| +.|+.|++||.
T Consensus 117 AtG--~~~~~~~i~g~ 130 (201)
T PF07992_consen 117 ATG--SRPRTPNIPGE 130 (201)
T ss_dssp EST--EEEEEESSTTT
T ss_pred cCc--cccceeecCCC
Confidence 999 77888888773
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=106.69 Aligned_cols=138 Identities=18% Similarity=0.251 Sum_probs=81.7
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCcccc--ccCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIM--ELSG 86 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~--~~~d 86 (1129)
++|+|||+|++|+.+|.+|++....- .|.|||+...+|+-..|+....+ ...|++...| .++|
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~--------------~~lNv~a~~mS~~~pD 67 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPE--------------HLLNVPAARMSAFAPD 67 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCch--------------hhhccccccccccCCC
Confidence 68999999999999999998854332 39999999999988888654322 1112221111 1122
Q ss_pred -------C--------CCCC---CCCCCCCCHHHHHHHHHHHHHhcCCcce---eE-eceeeeeeccccccCCCCceEEe
Q psy12350 87 -------Y--------HHKG---HPDKSYIAANDVLEYLNDFADNFNLRNL---CL-VNKNVQPLYKHLINIEHPSMCII 144 (1129)
Q Consensus 87 -------~--------~~~~---~~~~~~~~~~~~~~yl~~~~~~~~~~~~---i~-~~~~V~~v~~~~~~~~~~~~~~~ 144 (1129)
| ..+. .....|+++.-+-+|+.++...+-...+ ++ ..++++.+.+.. +..+|.+
T Consensus 68 ~p~~F~~WL~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~-n~~~~~~--- 143 (474)
T COG4529 68 IPQDFVRWLQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDT-NAGGYLV--- 143 (474)
T ss_pred CchHHHHHHHhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceecc-CCceEEE---
Confidence 0 0010 1244688899999998887666532111 32 244555555421 1122222
Q ss_pred ccccCccceEEecceeeeEEEEecccCC
Q psy12350 145 GIPRDTVGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 145 ~~~~~~~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
....+....+| -+|+|||+..
T Consensus 144 --~~~~g~~~~ad-----~~Vlatgh~~ 164 (474)
T COG4529 144 --TTADGPSEIAD-----IIVLATGHSA 164 (474)
T ss_pred --ecCCCCeeeee-----EEEEeccCCC
Confidence 22334556788 8999999543
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=102.06 Aligned_cols=105 Identities=20% Similarity=0.332 Sum_probs=67.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC-ceEecCCCCCCCCCCCCccCccccccccc-CCccccccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG-GTWVYTEQTGRDQYGLPVHSSMYKSLKTN-LPKEIMELSG 86 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G-G~w~~~~~~~~~~~~~~~~~~~y~~l~~~-~~~~~~~~~d 86 (1129)
..||+|||||||||+||..|++ .+++|+|+||+..+| |+|.- + ..++..... ...+.++..+
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~--~G~~V~vlEk~~~~Ggg~~~g----g----------~~~~~~~~~~~~~~~l~~~g 84 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAK--NGLKVCVLERSLAFGGGSWGG----G----------MLFSKIVVEKPAHEILDEFG 84 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCccccCC----C----------cceecccccchHHHHHHHCC
Confidence 4799999999999999999999 669999999999886 45531 1 011110000 0011111122
Q ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeecc
Q psy12350 87 YHHKGHPDK-SYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYK 131 (1129)
Q Consensus 87 ~~~~~~~~~-~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~ 131 (1129)
.++...... ...+..++.+.|.+.+.+.+. .+.++++|+.+..
T Consensus 85 i~~~~~~~g~~~~~~~el~~~L~~~a~e~GV--~I~~~t~V~dli~ 128 (254)
T TIGR00292 85 IRYEDEGDGYVVADSAEFISTLASKALQAGA--KIFNGTSVEDLIT 128 (254)
T ss_pred CCeeeccCceEEeeHHHHHHHHHHHHHHcCC--EEECCcEEEEEEE
Confidence 232211111 123566888888888888876 8899999988765
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >KOG1800|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.4e-07 Score=99.13 Aligned_cols=138 Identities=17% Similarity=0.204 Sum_probs=83.4
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccc---cccccccCC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLP---KDLMELCGY 817 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~---~~~~~~~~~ 817 (1129)
.++|||+||+|+.+|..|++..++++|.+||+.+.++|.-+|.-.|.. | .-... .|.- .+..+|+.+
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDH-----p----EvKnv-intFt~~aE~~rfsf~ 91 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDH-----P----EVKNV-INTFTKTAEHERFSFF 91 (468)
T ss_pred eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCC-----c----chhhH-HHHHHHHhhccceEEE
Confidence 578999999999999999997666999999999999999887543321 1 11100 0000 011122111
Q ss_pred ---CCCCC-CCC--CCCChhhhhhccC-CCCCCCCCCCCCCCCcEEeeccCCC-----------CCCCCCCeEEEEcCCc
Q psy12350 818 ---GHKGN-ADK--SYIGAKDVLENYN-HPIYPEFKGKDMCQIPILHSRDYRT-----------PEPFAGKQAVVVGSGQ 879 (1129)
Q Consensus 818 ---~~~~~-~~~--~~~~~~~v~~~~~-~P~~P~i~G~~~f~g~~~hs~~~~~-----------~~~~~gk~VvVVG~G~ 879 (1129)
..-.+ ... .-..+..+++.|+ .++..+|||-+. . .++.+..+.. ..++.+.+|+|||.|+
T Consensus 92 gNv~vG~dvsl~eL~~~ydavvLaYGa~~dR~L~IPGe~l-~-~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GN 169 (468)
T KOG1800|consen 92 GNVKVGRDVSLKELTDNYDAVVLAYGADGDRRLDIPGEEL-S-GVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGN 169 (468)
T ss_pred ecceecccccHHHHhhcccEEEEEecCCCCcccCCCCccc-c-cceehhhhhhhccCCCcccccCcccccceEEEEccCc
Confidence 11010 000 0001223333554 478889999762 2 3444443321 2356789999999999
Q ss_pred cHHHHHHHHHh
Q psy12350 880 SGLDITLDIAT 890 (1129)
Q Consensus 880 Sg~eiA~~la~ 890 (1129)
.++|+|..|..
T Consensus 170 VAlDvARiLls 180 (468)
T KOG1800|consen 170 VALDVARILLS 180 (468)
T ss_pred hhhhhhhhhhC
Confidence 99999988854
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.4e-08 Score=103.28 Aligned_cols=105 Identities=21% Similarity=0.334 Sum_probs=65.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce-EecCCCCCCCCCCCCccCccccccccc-CCccccccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT-WVYTEQTGRDQYGLPVHSSMYKSLKTN-LPKEIMELSG 86 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~-w~~~~~~~~~~~~~~~~~~~y~~l~~~-~~~~~~~~~d 86 (1129)
..||+||||||||++||.+|++ .|++|+|+||...+||. |.- + ..++..... .....+.-.+
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~--~G~~V~liEk~~~~Ggg~~~g----g----------~~~~~~~v~~~~~~~l~~~g 88 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK--AGLKVAVFERKLSFGGGMWGG----G----------MLFNKIVVQEEADEILDEFG 88 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh--CCCeEEEEecCCCCCCccccC----c----------cccccccchHHHHHHHHHCC
Confidence 4799999999999999999999 67999999999888763 321 0 001100000 0000111111
Q ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeecc
Q psy12350 87 YHHKGHPDK-SYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYK 131 (1129)
Q Consensus 87 ~~~~~~~~~-~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~ 131 (1129)
.++...... ...+..++...|.+.+.+.|. .++++++|+.+..
T Consensus 89 v~~~~~~~g~~~vd~~~l~~~L~~~A~~~Gv--~I~~~t~V~dl~~ 132 (257)
T PRK04176 89 IRYKEVEDGLYVADSVEAAAKLAAAAIDAGA--KIFNGVSVEDVIL 132 (257)
T ss_pred CCceeecCcceeccHHHHHHHHHHHHHHcCC--EEEcCceeceeeE
Confidence 222211111 123567888888888888876 8899999988764
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=98.64 E-value=2e-07 Score=92.96 Aligned_cols=129 Identities=22% Similarity=0.263 Sum_probs=79.7
Q ss_pred EEEcCChHHHHHHHHhhcC---CCCceEEEEcccCCcC--ceEecCCCCCCCCCCCCccCcccccccccCCcccccc-C-
Q psy12350 13 GVIGGGAGGLTATKRLTEP---GSGFTCTTFEQTDNVG--GTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMEL-S- 85 (1129)
Q Consensus 13 ~IIGaG~aGl~aA~~l~~~---~~~~~v~v~E~~~~~G--G~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~-~- 85 (1129)
|||||||+|++++++|.+. ....+|+|||+++. | +.|.... -+.+.+|++...|.. +
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~~~~~---------------~~~~llN~~a~~~s~~~~ 64 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAYRPDQ---------------PPSHLLNTPADQMSLFPD 64 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccCCCCC---------------ChHHhhcccccccccccc
Confidence 6999999999999999986 35789999999554 5 4665321 112233443333322 1
Q ss_pred ----CCC------C----CCCCCCCCCCHHHHHHHHHHHHHhcC--Ccce--e-EeceeeeeeccccccCCCCceEEecc
Q psy12350 86 ----GYH------H----KGHPDKSYIAANDVLEYLNDFADNFN--LRNL--C-LVNKNVQPLYKHLINIEHPSMCIIGI 146 (1129)
Q Consensus 86 ----d~~------~----~~~~~~~~~~~~~~~~yl~~~~~~~~--~~~~--i-~~~~~V~~v~~~~~~~~~~~~~~~~~ 146 (1129)
+|. . .......|+++..+-+||+++.+.+- +... + +.+.+|+.|++.. ++|.+..
T Consensus 65 ~~~~~f~~Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~---~~~~v~~--- 138 (156)
T PF13454_consen 65 DPGDDFVDWLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDD---DGYRVVT--- 138 (156)
T ss_pred cCCCCHHHHHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcC---CcEEEEE---
Confidence 110 0 01123479999999999998877652 2111 2 2356788777632 3443322
Q ss_pred ccCccceEEecceeeeEEEEeccc
Q psy12350 147 PRDTVGFYLFDLQVRFFLQLMQGH 170 (1129)
Q Consensus 147 ~~~~~~~~~~d~~~~~~lvvAtG~ 170 (1129)
.......+| +||+|||+
T Consensus 139 --~~g~~~~~d-----~VvLa~Gh 155 (156)
T PF13454_consen 139 --ADGQSIRAD-----AVVLATGH 155 (156)
T ss_pred --CCCCEEEeC-----EEEECCCC
Confidence 222456899 99999995
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-07 Score=91.53 Aligned_cols=40 Identities=33% Similarity=0.650 Sum_probs=36.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC-ceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG-GTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G-G~w~ 51 (1129)
.||+|||||||||+||++|++ .|++|+||||+..+| |.|.
T Consensus 31 sDViIVGaGPsGLtAAyyLAk--~g~kV~i~E~~ls~GGG~w~ 71 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAK--AGLKVAIFERKLSFGGGIWG 71 (262)
T ss_pred ccEEEECcCcchHHHHHHHHh--CCceEEEEEeecccCCcccc
Confidence 699999999999999999999 679999999998886 5776
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.7e-07 Score=93.42 Aligned_cols=131 Identities=20% Similarity=0.238 Sum_probs=80.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCC-CCCC------------------------C
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRD-QYGL------------------------P 64 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~-~~~~------------------------~ 64 (1129)
.+|+|||||+||++||..|++ .|.+|+||||...+||-.......++. ++|- .
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~--aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~ 79 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALRE--AGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDV 79 (331)
T ss_pred CcEEEEccchHHHHHHHHHHh--cCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceee
Confidence 369999999999999999999 679999999999999988765544432 1221 1
Q ss_pred ccCcccccccccCCccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEe
Q psy12350 65 VHSSMYKSLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCII 144 (1129)
Q Consensus 65 ~~~~~y~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~ 144 (1129)
....+|......++..--+- |-..-|..+.+.+|| +..+ .|+++++|+.+.+. .+.|++...
T Consensus 80 W~~~~~~~~~~~~~~~~d~~--------pyvg~pgmsalak~L---AtdL----~V~~~~rVt~v~~~---~~~W~l~~~ 141 (331)
T COG3380 80 WTPAVWTFTGDGSPPRGDED--------PYVGEPGMSALAKFL---ATDL----TVVLETRVTEVART---DNDWTLHTD 141 (331)
T ss_pred ccccccccccCCCCCCCCCC--------ccccCcchHHHHHHH---hccc----hhhhhhhhhhheec---CCeeEEEec
Confidence 12333332211111111000 011123445555543 3433 78999999998763 355766542
Q ss_pred ccccCccceEEecceeeeEEEEecc
Q psy12350 145 GIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 145 ~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
+ ......|| .||||.-
T Consensus 142 ~----g~~~~~~d-----~vvla~P 157 (331)
T COG3380 142 D----GTRHTQFD-----DVVLAIP 157 (331)
T ss_pred C----CCcccccc-----eEEEecC
Confidence 2 23345688 8999864
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.3e-06 Score=101.50 Aligned_cols=144 Identities=15% Similarity=0.173 Sum_probs=80.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc---CceEecCCCCC--CCCCCC---------CccC-ccccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV---GGTWVYTEQTG--RDQYGL---------PVHS-SMYKS 72 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~---GG~w~~~~~~~--~~~~~~---------~~~~-~~y~~ 72 (1129)
+.++|+|||||||||++|..|++ .|++|+||||++.+ |......++.- .+..|+ +... ..+.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~--~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~- 79 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRR--AGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFD- 79 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEEC-
Confidence 35799999999999999999999 66999999998653 21111111000 000111 0000 0000
Q ss_pred ccccCCccccccC--CCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCc
Q psy12350 73 LKTNLPKEIMELS--GYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDT 150 (1129)
Q Consensus 73 l~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 150 (1129)
.....+..++ .+.....+......+.++.+++.+.+...++ .++++++|+.++... +. +.+.. .+
T Consensus 80 ---~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~---~~--~~v~~-~~-- 146 (375)
T PRK06847 80 ---PDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGA--DVRLGTTVTAIEQDD---DG--VTVTF-SD-- 146 (375)
T ss_pred ---CCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCC--EEEeCCEEEEEEEcC---CE--EEEEE-cC--
Confidence 0001111111 0000001122345678899999988887776 899999999887521 22 22222 12
Q ss_pred cceEEecceeeeEEEEecccCC
Q psy12350 151 VGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 151 ~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
.....+| .||+|+|.++
T Consensus 147 g~~~~ad-----~vI~AdG~~s 163 (375)
T PRK06847 147 GTTGRYD-----LVVGADGLYS 163 (375)
T ss_pred CCEEEcC-----EEEECcCCCc
Confidence 2345678 9999999654
|
|
| >KOG2755|consensus | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.6e-07 Score=90.05 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=29.1
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+.+|||||.||.+||..|++.-+..+|.++-..+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 3689999999999999999877788888887644
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.4e-07 Score=99.03 Aligned_cols=143 Identities=13% Similarity=0.082 Sum_probs=78.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCC--CCCCCCCCccCcc--ccccccc-CCcccccc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQT--GRDQYGLPVHSSM--YKSLKTN-LPKEIMEL 84 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~--~~~~~~~~~~~~~--y~~l~~~-~~~~~~~~ 84 (1129)
+||+||||||||+++|..|++ .|.+|+|+||+...+..+.-.... .....+.+..... ....... ......
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~--~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 76 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLAD--KGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSV-- 76 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEE--
Confidence 489999999999999999999 679999999988766533210000 0000000000000 0000000 000000
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEE
Q psy12350 85 SGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFL 164 (1129)
Q Consensus 85 ~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 164 (1129)
+++.+. +.....++..+.+.+.+.+.+.+. .++++++|+.+.... +...+.+. ++.....+| +|
T Consensus 77 -~~~~~~-~~~~~i~r~~l~~~l~~~~~~~gv--~~~~~~~v~~~~~~~---~~~~~~~~----~~~~~~~a~-----~v 140 (295)
T TIGR02032 77 -EIPIET-ELAYVIDRDAFDEQLAERAQEAGA--ELRLGTTVLDVEIHD---DRVVVIVR----GGEGTVTAK-----IV 140 (295)
T ss_pred -EeccCC-CcEEEEEHHHHHHHHHHHHHHcCC--EEEeCcEEeeEEEeC---CEEEEEEc----CccEEEEeC-----EE
Confidence 111111 111235778888999888888766 889999998876421 11222221 122345677 99
Q ss_pred EEecccCC
Q psy12350 165 QLMQGHVT 172 (1129)
Q Consensus 165 vvAtG~~~ 172 (1129)
|+|+|..+
T Consensus 141 v~a~G~~s 148 (295)
T TIGR02032 141 IGADGSRS 148 (295)
T ss_pred EECCCcch
Confidence 99999554
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.6e-07 Score=77.00 Aligned_cols=37 Identities=38% Similarity=0.689 Sum_probs=33.8
Q ss_pred EEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 14 IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
|||||+|||+||..|++ .+++|+||||++.+||.+..
T Consensus 1 IiGaG~sGl~aA~~L~~--~g~~v~v~E~~~~~GG~~~~ 37 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK--AGYRVTVFEKNDRLGGRARS 37 (68)
T ss_dssp EES-SHHHHHHHHHHHH--TTSEEEEEESSSSSSGGGCE
T ss_pred CEeeCHHHHHHHHHHHH--CCCcEEEEecCcccCcceeE
Confidence 89999999999999999 57999999999999999884
|
... |
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.4e-06 Score=99.51 Aligned_cols=152 Identities=17% Similarity=0.170 Sum_probs=79.6
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCC-CCCCCCCCCCcc--CcccccccccCCccc-cccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTE-QTGRDQYGLPVH--SSMYKSLKTNLPKEI-MELS 85 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~-~~~~~~~~~~~~--~~~y~~l~~~~~~~~-~~~~ 85 (1129)
+||+||||||||++||..|++ .|++|+|+||....+..|.-.- ......+|++.. ......++...+... ..+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~--~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~ 78 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS--AGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIG 78 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh--CCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEec
Confidence 489999999999999999999 6799999999766544432100 000011121110 000111111111111 0111
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccc----cCccceEEecceee
Q psy12350 86 GYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIP----RDTVGFYLFDLQVR 161 (1129)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~ 161 (1129)
. ..+....-...++..+.++|.+.|.+.|. .++.++ +..+.......+.+.+++.... .++.....++
T Consensus 79 ~-~~~~~~~~~~v~R~~~d~~L~~~a~~~G~--~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~---- 150 (398)
T TIGR02028 79 R-TLKEHEYIGMLRREVLDSFLRRRAADAGA--TLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVD---- 150 (398)
T ss_pred c-CCCCCCceeeeeHHHHHHHHHHHHHHCCc--EEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeC----
Confidence 0 00000000125788899999999988877 666554 5555321111233445443221 1222345667
Q ss_pred eEEEEecccCC
Q psy12350 162 FFLQLMQGHVT 172 (1129)
Q Consensus 162 ~~lvvAtG~~~ 172 (1129)
.||.|+|..+
T Consensus 151 -~VIgADG~~S 160 (398)
T TIGR02028 151 -AVIGADGANS 160 (398)
T ss_pred -EEEECCCcch
Confidence 9999999433
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.6e-06 Score=100.79 Aligned_cols=145 Identities=21% Similarity=0.283 Sum_probs=81.9
Q ss_pred EEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCC---C--------ccCcccccccccCCccc
Q psy12350 13 GVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGL---P--------VHSSMYKSLKTNLPKEI 81 (1129)
Q Consensus 13 ~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~---~--------~~~~~y~~l~~~~~~~~ 81 (1129)
+|||||+|||+||..|++ .|.+|+|+||++.+|+.+..+....|+-... + ....++..+....+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~--~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 78 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAR--EGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDL 78 (400)
T ss_pred CEEEEeHHHHHHHHHHHh--cCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHH
Confidence 699999999999999999 6689999999998886554322211110000 0 00001111111111111
Q ss_pred ccc-CCC--CCCC-CCCCCCC---CHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceE
Q psy12350 82 MEL-SGY--HHKG-HPDKSYI---AANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFY 154 (1129)
Q Consensus 82 ~~~-~d~--~~~~-~~~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1129)
..+ .++ ++.. .....|| ...++.+.+.+.+++.++ .++++++|+.+.+.. +.+. +.. . ....
T Consensus 79 ~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv--~i~~~~~V~~i~~~~---~~~~--v~~--~--~~~i 147 (400)
T TIGR00275 79 IDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGV--EILTNSKVKSIKKDD---NGFG--VET--S--GGEY 147 (400)
T ss_pred HHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEecC---CeEE--EEE--C--CcEE
Confidence 111 000 1100 0011232 457888889888888876 789999999886521 2232 222 1 1245
Q ss_pred EecceeeeEEEEecccCCCCC
Q psy12350 155 LFDLQVRFFLQLMQGHVTLPS 175 (1129)
Q Consensus 155 ~~d~~~~~~lvvAtG~~~~p~ 175 (1129)
.+| +||+|||.++.|.
T Consensus 148 ~ad-----~VIlAtG~~s~p~ 163 (400)
T TIGR00275 148 EAD-----KVILATGGLSYPQ 163 (400)
T ss_pred EcC-----EEEECCCCcccCC
Confidence 677 9999999776553
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.9e-06 Score=100.19 Aligned_cols=37 Identities=30% Similarity=0.494 Sum_probs=33.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..++|+||||||||+++|..|++ .|++|+|+||++..
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~ 53 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKD--SGLRIALIEAQPAE 53 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhc--CCCEEEEEecCCcc
Confidence 35799999999999999999999 67999999998754
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.7e-06 Score=98.04 Aligned_cols=146 Identities=13% Similarity=0.139 Sum_probs=78.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc------eEecCCCCCCCC-C--CCCccCccc-ccccccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG------TWVYTEQTGRDQ-Y--GLPVHSSMY-KSLKTNL 77 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG------~w~~~~~~~~~~-~--~~~~~~~~y-~~l~~~~ 77 (1129)
+.+||+||||||||++||..|++ .|++|+|+||.+.+|. .+.........+ . ..|...... +.+....
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~--~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAR--EGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMT 81 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHh--CCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEc
Confidence 35899999999999999999999 6699999999876653 221100000000 0 000000000 0000000
Q ss_pred Ccc--ccccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceE
Q psy12350 78 PKE--IMELSGYHHKGHPDK-SYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFY 154 (1129)
Q Consensus 78 ~~~--~~~~~d~~~~~~~~~-~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1129)
... ...+.+-.....+.. -...+.++.++|.+.+.+.|. .++.+++|+.+... ++..+.+.+ . ....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv--~i~~~~~V~~i~~~----~g~v~~v~~--~--g~~i 151 (428)
T PRK10157 82 EKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGA--QLITGIRVDNLVQR----DGKVVGVEA--D--GDVI 151 (428)
T ss_pred CCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCC--EEECCCEEEEEEEe----CCEEEEEEc--C--CcEE
Confidence 000 011111000000011 223677888899988888876 88999999987642 222112221 1 2234
Q ss_pred EecceeeeEEEEeccc
Q psy12350 155 LFDLQVRFFLQLMQGH 170 (1129)
Q Consensus 155 ~~d~~~~~~lvvAtG~ 170 (1129)
..| .||+|+|.
T Consensus 152 ~A~-----~VI~A~G~ 162 (428)
T PRK10157 152 EAK-----TVILADGV 162 (428)
T ss_pred ECC-----EEEEEeCC
Confidence 566 89999994
|
|
| >KOG1346|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.2e-07 Score=95.10 Aligned_cols=130 Identities=13% Similarity=0.216 Sum_probs=80.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHhc----CCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--e
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATT----GKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--V 942 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~----~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i 942 (1129)
-++|.|||+|..|.|+|+.|.+. |.+|+.+-.... +|...+.++..+..+. ..-.++|.++++ |
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~--nm~kiLPeyls~wt~e--------kir~~GV~V~pna~v 416 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKY--NMEKILPEYLSQWTIE--------KIRKGGVDVRPNAKV 416 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccC--ChhhhhHHHHHHHHHH--------HHHhcCceeccchhh
Confidence 37899999999999999999874 556765522110 1111111111111110 111347777776 5
Q ss_pred eEEeC--C--cEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcc-cccccceeecCCCCcEEEcccc
Q psy12350 943 AELTP--T--GVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNV-QPLYKHTINIEHPTMFILGVPR 1011 (1129)
Q Consensus 943 ~~v~~--~--~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~-~~ly~~~~~~~~p~l~~iG~~~ 1011 (1129)
+++.. . -+.++||.++..|+||.|+|-.||...... .|++++..-. .++...+. --.||++.|+..
T Consensus 417 ~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~-sgLeiD~~lGGfrvnaeL~--ar~NvwvAGdaa 487 (659)
T KOG1346|consen 417 ESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEA-SGLEIDEKLGGFRVNAELK--ARENVWVAGDAA 487 (659)
T ss_pred hhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhccc-ccceeecccCcEEeeheee--cccceeeecchh
Confidence 55532 2 277899999999999999999999875554 6788775421 13333331 135899999864
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.7e-06 Score=97.98 Aligned_cols=141 Identities=11% Similarity=0.144 Sum_probs=79.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCC--CC-CCCCCCCCccC---cccccccccCCcccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTE--QT-GRDQYGLPVHS---SMYKSLKTNLPKEIM 82 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~--~~-~~~~~~~~~~~---~~y~~l~~~~~~~~~ 82 (1129)
.+||+||||||||++||+.|++ .|++|+|+||.+.+|.-..-.. .+ .......+... ..........+....
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~--~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~ 80 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAK--AGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKV 80 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHH--cCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCce
Confidence 4899999999999999999999 5599999999988874222100 00 00000000100 000000000110000
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeee
Q psy12350 83 ELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRF 162 (1129)
Q Consensus 83 ~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 162 (1129)
.+ +.+. +..-...+..+.++|...|.+.|. .++.+++|+.+..+. ++..+.+.. .+ .+...+
T Consensus 81 ~~---~~~~-~~~y~v~R~~fd~~La~~A~~aGa--e~~~~~~~~~~~~~~---~~~~~~~~~--~~--~e~~a~----- 142 (396)
T COG0644 81 AI---EVPV-GEGYIVDRAKFDKWLAERAEEAGA--ELYPGTRVTGVIRED---DGVVVGVRA--GD--DEVRAK----- 142 (396)
T ss_pred EE---ecCC-CceEEEEhHHhhHHHHHHHHHcCC--EEEeceEEEEEEEeC---CcEEEEEEc--CC--EEEEcC-----
Confidence 00 0000 011233678888999999999887 889999998887531 122222211 11 344566
Q ss_pred EEEEecc
Q psy12350 163 FLQLMQG 169 (1129)
Q Consensus 163 ~lvvAtG 169 (1129)
+||.|+|
T Consensus 143 ~vI~AdG 149 (396)
T COG0644 143 VVIDADG 149 (396)
T ss_pred EEEECCC
Confidence 8999999
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.6e-06 Score=96.49 Aligned_cols=145 Identities=11% Similarity=0.144 Sum_probs=74.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc---------CceEecCCCCCCCCCCCCccCcccccccccCCcc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV---------GGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKE 80 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~---------GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~ 80 (1129)
+||+||||||||+++|..|++ . ++|+|+||.+.+ ||.....-..-....|+............. +-.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~--~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~-~~~ 77 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAG--K-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIF-AVK 77 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhc--c-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccc-eee
Confidence 689999999999999999998 6 899999998743 221110000000001111000000000000 000
Q ss_pred ccccCCCCCCC--CCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecc
Q psy12350 81 IMELSGYHHKG--HPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDL 158 (1129)
Q Consensus 81 ~~~~~d~~~~~--~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 158 (1129)
...+.+ +... .......++.++.+.+.+.+ ..++ .++++++|+.+... .++|.+... .++......+|
T Consensus 78 ~~~~~~-~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv--~v~~~~~v~~i~~~---~~~~~v~~~--~~g~~~~i~a~- 147 (351)
T PRK11445 78 TIDLAN-SLTRNYQRSYINIDRHKFDLWLKSLI-PASV--EVYHNSLCRKIWRE---DDGYHVIFR--ADGWEQHITAR- 147 (351)
T ss_pred Eecccc-cchhhcCCCcccccHHHHHHHHHHHH-hcCC--EEEcCCEEEEEEEc---CCEEEEEEe--cCCcEEEEEeC-
Confidence 001110 0000 00111256777877777643 3344 78899999888753 234554432 22222245677
Q ss_pred eeeeEEEEecccCC
Q psy12350 159 QVRFFLQLMQGHVT 172 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~ 172 (1129)
+||.|+|..+
T Consensus 148 ----~vV~AdG~~S 157 (351)
T PRK11445 148 ----YLVGADGANS 157 (351)
T ss_pred ----EEEECCCCCc
Confidence 9999999554
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.4e-06 Score=96.02 Aligned_cols=146 Identities=16% Similarity=0.179 Sum_probs=78.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc-CCc---CceEecCCCCCCCCCCCCcc--CcccccccccCCccccc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT-DNV---GGTWVYTEQTGRDQYGLPVH--SSMYKSLKTNLPKEIME 83 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~-~~~---GG~w~~~~~~~~~~~~~~~~--~~~y~~l~~~~~~~~~~ 83 (1129)
+||+||||||||++||+.|++ .|++|+|+||. ... ||.... ...+.++++.. ...+...+...+....-
T Consensus 1 yDVvIVGaGpAG~~aA~~La~--~G~~V~l~E~~~~~~~~cg~~i~~---~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~ 75 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR--AGIETILLERALSNIKPCGGAIPP---CLIEEFDIPDSLIDRRVTQMRMISPSRVPI 75 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCcCcCcCCcCH---hhhhhcCCchHHHhhhcceeEEEcCCCcee
Confidence 589999999999999999999 67999999997 221 222110 00011122110 01112222211211100
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccc---cCccceEEeccee
Q psy12350 84 LSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIP---RDTVGFYLFDLQV 160 (1129)
Q Consensus 84 ~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~ 160 (1129)
..++|.+.. .....++..+.++|.+.+.+.|. .++. ++|+.+... .+.+.++..+.. .++......|
T Consensus 76 ~~~~~~~~~-~~~~~~r~~fd~~L~~~a~~~G~--~v~~-~~v~~v~~~---~~~~~v~~~~~~~~~~~~~~~i~a~--- 145 (388)
T TIGR02023 76 KVTIPSEDG-YVGMVRREVFDSYLRERAQKAGA--ELIH-GLFLKLERD---RDGVTLTYRTPKKGAGGEKGSVEAD--- 145 (388)
T ss_pred eeccCCCCC-ceEeeeHHHHHHHHHHHHHhCCC--EEEe-eEEEEEEEc---CCeEEEEEEeccccCCCcceEEEeC---
Confidence 011111000 00126888999999998888876 5654 457777542 133444443210 1122345677
Q ss_pred eeEEEEecccCC
Q psy12350 161 RFFLQLMQGHVT 172 (1129)
Q Consensus 161 ~~~lvvAtG~~~ 172 (1129)
.||.|+|..+
T Consensus 146 --~VI~AdG~~S 155 (388)
T TIGR02023 146 --VVIGADGANS 155 (388)
T ss_pred --EEEECCCCCc
Confidence 9999999554
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.6e-06 Score=99.32 Aligned_cols=146 Identities=12% Similarity=0.133 Sum_probs=78.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc----eEecCCCC--CCCCCCC---------CccC-ccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG----TWVYTEQT--GRDQYGL---------PVHS-SMYKS 72 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG----~w~~~~~~--~~~~~~~---------~~~~-~~y~~ 72 (1129)
..+|+||||||+||++|..|++ .|++|+|+||.+.+.- ... .++. -....|+ +... ..|..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~--~Gi~v~viE~~~~~~~~~ra~~l-~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~ 79 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELAR--RGVSFRLIEKAPEPFPGSRGKGI-QPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRD 79 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCcCccceee-cHHHHHHHHHcCcHHHHHhcCccccceeEEeC
Confidence 4799999999999999999999 6799999999875421 100 0000 0001121 1110 11110
Q ss_pred ccccCCccccccCC-C-CCCCC--CCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEecccc
Q psy12350 73 LKTNLPKEIMELSG-Y-HHKGH--PDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPR 148 (1129)
Q Consensus 73 l~~~~~~~~~~~~d-~-~~~~~--~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~ 148 (1129)
...+.. ..+.. + +.+.. +.....+...+.+.|.+.+.+.+. .++++++|++++... +...+++.+ .
T Consensus 80 -~~~~~~--~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~i~~~~---~~v~v~~~~--~ 149 (502)
T PRK06184 80 -DGSVAE--SDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGH--RVEFGCELVGFEQDA---DGVTARVAG--P 149 (502)
T ss_pred -CceEEE--eeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCC--EEEeCcEEEEEEEcC---CcEEEEEEe--C
Confidence 000000 00000 0 00000 111223456677777777777765 899999999987521 233333322 1
Q ss_pred CccceEEecceeeeEEEEecccCC
Q psy12350 149 DTVGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 149 ~~~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
+.......| +||.|+|..|
T Consensus 150 ~~~~~i~a~-----~vVgADG~~S 168 (502)
T PRK06184 150 AGEETVRAR-----YLVGADGGRS 168 (502)
T ss_pred CCeEEEEeC-----EEEECCCCch
Confidence 223456677 9999999554
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.4e-06 Score=96.91 Aligned_cols=57 Identities=25% Similarity=0.230 Sum_probs=43.6
Q ss_pred eEEEeecccccceeeccCccccccCCchhhHHHHHH-hhCCCcceEEEcccCCcCcccccC
Q psy12350 724 MFILGVSFTIEEFIKVCPNIVDRHGPGGLTATKRLT-EAGNGFTCTTFEQADNIGGTWLYT 783 (1129)
Q Consensus 724 l~~vG~~~~pn~~~~~g~~~iiG~G~~gl~~a~~l~-~~g~~~~v~v~E~~~~~GG~w~~~ 783 (1129)
+.+.|-..|+... ....|+|||+||+|+.+|.+|+ +.| ++|+||||.+.+||++.+.
T Consensus 25 ~~~~~~~~~~~~~-~~krVAIVGaGPAGlyaA~~Ll~~~g--~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 25 LPFTGKCFFTNEA-KPFKVGIIGAGPSALYCCKHLLKHER--VKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCCCccccCCCCC-CCCEEEEECCcHHHHHHHHHHHHhcC--CeEEEEecCCCCccEEEEe
Confidence 3444544443322 3346899999999999999876 457 9999999999999999964
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-05 Score=94.86 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=33.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.+||+||||||||++||..|++ .|++|+|+||.+.+|
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~--~G~~VlliEr~~~~g 41 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMAR--AGLDVLVIERGDSAG 41 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCC
Confidence 4899999999999999999999 679999999987654
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=1e-05 Score=98.34 Aligned_cols=149 Identities=11% Similarity=0.116 Sum_probs=81.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc---eEecCCCCC--CCCCCCCc--c--Cccccccccc--
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG---TWVYTEQTG--RDQYGLPV--H--SSMYKSLKTN-- 76 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG---~w~~~~~~~--~~~~~~~~--~--~~~y~~l~~~-- 76 (1129)
..++|+||||||+||++|..|++ .|++|+|+||.+.++. .+...++.- .+..|+.. . .......+..
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~--~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 86 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQ--YGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDA 86 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcC
Confidence 45899999999999999999999 6799999999876532 111111000 00011100 0 0000011100
Q ss_pred CCccccccC-----CCCCCCCCCCCCCCHHHHHHHHHHHHHhc-CCcceeEeceeeeeeccccccCCCCceEEeccccCc
Q psy12350 77 LPKEIMELS-----GYHHKGHPDKSYIAANDVLEYLNDFADNF-NLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDT 150 (1129)
Q Consensus 77 ~~~~~~~~~-----d~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 150 (1129)
..+.+..+. .+.+ +.........+.++|.+.+.++ ++ .++++++|+.++... +++.+++.+. +++
T Consensus 87 ~g~~~~~~~~~~~~~~g~---~~~~~~~q~~le~~L~~~~~~~~gv--~v~~g~~v~~i~~~~---~~v~v~~~~~-~G~ 157 (538)
T PRK06183 87 KGRCLAEIARPSTGEFGW---PRRNAFHQPLLEAVLRAGLARFPHV--RVRFGHEVTALTQDD---DGVTVTLTDA-DGQ 157 (538)
T ss_pred CCCEEEEEcCCCCCCCCC---ChhccCChHHHHHHHHHHHHhCCCc--EEEcCCEEEEEEEcC---CeEEEEEEcC-CCC
Confidence 001111221 0111 1112335667778888777665 45 899999999987532 3344433321 222
Q ss_pred cceEEecceeeeEEEEecccCC
Q psy12350 151 VGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 151 ~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
......| +||.|.|..|
T Consensus 158 ~~~i~ad-----~vVgADG~~S 174 (538)
T PRK06183 158 RETVRAR-----YVVGCDGANS 174 (538)
T ss_pred EEEEEEE-----EEEecCCCch
Confidence 3455677 9999999554
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.6e-06 Score=97.42 Aligned_cols=150 Identities=19% Similarity=0.244 Sum_probs=78.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc-----CceEecCCCCCCCCCCC--Cc---cCcccccccccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV-----GGTWVYTEQTGRDQYGL--PV---HSSMYKSLKTNL 77 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~-----GG~w~~~~~~~~~~~~~--~~---~~~~y~~l~~~~ 77 (1129)
...||+|||||++|+++|..|++ .|++|+|+|+++.. |..+......-.+..|+ .. ....+..++...
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~--~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~ 82 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLAR--AGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEI 82 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEE
Confidence 35899999999999999999999 67999999997543 11111000000001121 00 000111111100
Q ss_pred Ccc---ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhc-CCcceeEeceeeeeeccccccCCCC-ceEEeccccCccc
Q psy12350 78 PKE---IMELSGYHHKGHPDKSYIAANDVLEYLNDFADNF-NLRNLCLVNKNVQPLYKHLINIEHP-SMCIIGIPRDTVG 152 (1129)
Q Consensus 78 ~~~---~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~-~~~~~~~~~~~~~ 152 (1129)
... ...|...+.+ .+...+.....+.++|.+.+.+. ++ .++++++|+.+.... +.. .+.+.. .+...
T Consensus 83 ~~~~~~~~~~~~~~~~-~~~~~~v~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~~~~~~---~~v~~v~~~~--~~g~~ 154 (407)
T PRK06185 83 GGRTVTLADFSRLPTP-YPYIAMMPQWDFLDFLAEEASAYPNF--TLRMGAEVTGLIEEG---GRVTGVRART--PDGPG 154 (407)
T ss_pred CCeEEEecchhhcCCC-CCcEEEeehHHHHHHHHHHHhhCCCc--EEEeCCEEEEEEEeC---CEEEEEEEEc--CCCcE
Confidence 111 1122111111 11112346778888888877665 45 788899999887531 111 122221 12223
Q ss_pred eEEecceeeeEEEEecccCC
Q psy12350 153 FYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 153 ~~~~d~~~~~~lvvAtG~~~ 172 (1129)
.+..| .||.|.|.++
T Consensus 155 ~i~a~-----~vI~AdG~~S 169 (407)
T PRK06185 155 EIRAD-----LVVGADGRHS 169 (407)
T ss_pred EEEeC-----EEEECCCCch
Confidence 45677 8999999654
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.4e-06 Score=95.83 Aligned_cols=146 Identities=12% Similarity=0.171 Sum_probs=78.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC------ceEecCCCC--CCCCCCC---------CccCcc-cc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG------GTWVYTEQT--GRDQYGL---------PVHSSM-YK 71 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G------G~w~~~~~~--~~~~~~~---------~~~~~~-y~ 71 (1129)
++|+||||||+|+++|..|++.|++++|+|+||.+... |... .++. -.+..|+ +..... ++
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l-~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAI-AAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEe-cHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 68999999999999999999966679999999976421 1110 0000 0001111 111100 00
Q ss_pred cccc-cCCccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCc
Q psy12350 72 SLKT-NLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDT 150 (1129)
Q Consensus 72 ~l~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 150 (1129)
.... ........+..-..+..+.....++..+.+.|.+.+.+.++ .++++++|+.++.. ...+.+.. .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~-----~~~v~v~~-~~-- 150 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGI--DLREATSVTDFETR-----DEGVTVTL-SD-- 150 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEc-----CCEEEEEE-CC--
Confidence 0000 00000011110000001111234778888999888887766 78999999988652 22222321 12
Q ss_pred cceEEecceeeeEEEEecccC
Q psy12350 151 VGFYLFDLQVRFFLQLMQGHV 171 (1129)
Q Consensus 151 ~~~~~~d~~~~~~lvvAtG~~ 171 (1129)
......| .||.|+|..
T Consensus 151 g~~~~ad-----~vI~AdG~~ 166 (403)
T PRK07333 151 GSVLEAR-----LLVAADGAR 166 (403)
T ss_pred CCEEEeC-----EEEEcCCCC
Confidence 2345677 999999944
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.6e-05 Score=91.89 Aligned_cols=75 Identities=11% Similarity=0.012 Sum_probs=52.1
Q ss_pred CCCCCCcccch-hhhc----ccccEEEEccccCCccccc------------CCCCeEEcCCceEEcC--Cce---EEcCC
Q psy12350 265 AANGPSGLDIT-HDIS----TEATTVFLSHHSEHVKKLR------------FPNNVVKKPDIAELTP--TGV---RFQDG 322 (1129)
Q Consensus 265 vGgG~sg~e~A-~~l~----~~~~~V~lv~r~~~~~~~~------------~~~~i~~~~~v~~~~~--~~v---~~~dg 322 (1129)
++.+.+|+|.+ ..++ .+|.+|+++.+.++.++.. ...++..+..|.+++. +++ ...+|
T Consensus 221 ~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g 300 (422)
T PRK05329 221 LLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNH 300 (422)
T ss_pred EECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCC
Confidence 58999999999 6665 4699999998877654321 1225666777877753 332 22345
Q ss_pred C--EeecCEEEEccccccc
Q psy12350 323 S--YEQVDIILYCTGYTYR 339 (1129)
Q Consensus 323 ~--~~~~D~VI~atG~~~~ 339 (1129)
+ .+++|.||+|||...+
T Consensus 301 ~~~~i~AD~VVLAtGrf~s 319 (422)
T PRK05329 301 GDIPLRARHFVLATGSFFS 319 (422)
T ss_pred ceEEEECCEEEEeCCCccc
Confidence 4 4699999999997644
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.5e-06 Score=95.14 Aligned_cols=143 Identities=17% Similarity=0.231 Sum_probs=75.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC---ceEecCCCC--CCCCCCCCc----cCcccccccccCCcc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG---GTWVYTEQT--GRDQYGLPV----HSSMYKSLKTNLPKE 80 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G---G~w~~~~~~--~~~~~~~~~----~~~~y~~l~~~~~~~ 80 (1129)
++|+||||||||+++|..|++ .|++|+||||++.+. ..+...++. .....|+.. .......+....+..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~--~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g 78 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQE--QGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKG 78 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCC
Confidence 489999999999999999999 679999999987642 111111100 000111100 000001000000000
Q ss_pred ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEeccee
Q psy12350 81 IMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQV 160 (1129)
Q Consensus 81 ~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 160 (1129)
. .+...++...+.....++..+.+.|.+.+.. ..|+++++|++++.. ...+.+.. .+ .....+|
T Consensus 79 ~-~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~----~~i~~~~~v~~i~~~-----~~~v~v~~-~~--g~~~~~~--- 142 (373)
T PRK06753 79 T-LLNKVKLKSNTLNVTLHRQTLIDIIKSYVKE----DAIFTGKEVTKIENE-----TDKVTIHF-AD--GESEAFD--- 142 (373)
T ss_pred C-EEeecccccCCccccccHHHHHHHHHHhCCC----ceEEECCEEEEEEec-----CCcEEEEE-CC--CCEEecC---
Confidence 0 0011111111112235777888888776653 268999999998752 22233322 12 2345677
Q ss_pred eeEEEEecccCC
Q psy12350 161 RFFLQLMQGHVT 172 (1129)
Q Consensus 161 ~~~lvvAtG~~~ 172 (1129)
.||-|.|..|
T Consensus 143 --~vigadG~~S 152 (373)
T PRK06753 143 --LCIGADGIHS 152 (373)
T ss_pred --EEEECCCcch
Confidence 8888999443
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.5e-05 Score=97.32 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=32.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
..+|+||||||+||++|..|++ .|++|+||||.+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~--~G~~v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGR--RGVDSILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCC
Confidence 4799999999999999999999 6799999999764
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.4e-06 Score=98.49 Aligned_cols=149 Identities=15% Similarity=0.180 Sum_probs=78.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc----CceEecCCCC-CCCCCCC---------Cc---cCccccc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV----GGTWVYTEQT-GRDQYGL---------PV---HSSMYKS 72 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~----GG~w~~~~~~-~~~~~~~---------~~---~~~~y~~ 72 (1129)
.+|+||||||||+++|..|++ .|++|+||||++.. .|.....+.. -....|+ +. ....|..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~--~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~ 79 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALAR--AGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDG 79 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHH--TTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHh--cccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecc
Confidence 689999999999999999999 66999999997653 1221110000 0000111 00 0001110
Q ss_pred c-----cccCCccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccc
Q psy12350 73 L-----KTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIP 147 (1129)
Q Consensus 73 l-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~ 147 (1129)
. ....+.....+. . ....+......+..+.+.|.+.+++.++ .++++++|+.+.... ++..+.+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~r~~l~~~L~~~~~~~gv--~i~~~~~v~~~~~d~---~~~~~~~~~~~ 152 (356)
T PF01494_consen 80 ISDSRIWVENPQIREDME-I-DTKGPYGHVIDRPELDRALREEAEERGV--DIRFGTRVVSIEQDD---DGVTVVVRDGE 152 (356)
T ss_dssp TTTSEEEEEEEEEEEECH-S-TSGSSCEEEEEHHHHHHHHHHHHHHHTE--EEEESEEEEEEEEET---TEEEEEEEETC
T ss_pred cCCccceeeecccceeee-c-cccCCcchhhhHHHHHHhhhhhhhhhhh--hheeeeecccccccc---ccccccccccc
Confidence 0 000000000100 0 0001112234678899999999888875 899999999876521 22333343323
Q ss_pred cCccceEEecceeeeEEEEecccCC
Q psy12350 148 RDTVGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 148 ~~~~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
.++......| .||-|.|..|
T Consensus 153 ~g~~~~i~ad-----lvVgADG~~S 172 (356)
T PF01494_consen 153 DGEEETIEAD-----LVVGADGAHS 172 (356)
T ss_dssp TCEEEEEEES-----EEEE-SGTT-
T ss_pred CCceeEEEEe-----eeecccCccc
Confidence 3333456677 8999999544
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.4e-06 Score=100.51 Aligned_cols=42 Identities=33% Similarity=0.508 Sum_probs=38.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
+.++|+|||||+|||+||..|++ .|++|+|+|+++.+||.+.
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~--~g~~v~v~E~~~~~GG~~~ 44 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLK--RGYPVTVLEADPVVGGISR 44 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCceee
Confidence 34799999999999999999999 5799999999999999987
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.7e-05 Score=92.70 Aligned_cols=148 Identities=10% Similarity=0.118 Sum_probs=77.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC----c--e--EecCCCCC--CCCCCCC--c---cCccccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG----G--T--WVYTEQTG--RDQYGLP--V---HSSMYKS 72 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G----G--~--w~~~~~~~--~~~~~~~--~---~~~~y~~ 72 (1129)
...+|+||||||+|+++|..|++ .|++|+|+||.+..+ | . ....+..- .+..|+- . ....|..
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~--~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 82 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALAD--AGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRR 82 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc--CCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccE
Confidence 45799999999999999999999 669999999976431 1 0 00000000 0011110 0 0001111
Q ss_pred ccccC--CccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCc
Q psy12350 73 LKTNL--PKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDT 150 (1129)
Q Consensus 73 l~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 150 (1129)
...-. ......+...............+..+.+.|.+.+.+.++ .++++++|+++.... +.+.++. .++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv--~i~~~~~v~~i~~~~---~~v~v~~---~~g- 153 (392)
T PRK08773 83 MRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGV--QLHCPARVVALEQDA---DRVRLRL---DDG- 153 (392)
T ss_pred EEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeEEEEEecC---CeEEEEE---CCC-
Confidence 10000 000111110000000011123567777888777777766 789999999887521 2232222 122
Q ss_pred cceEEecceeeeEEEEecccCC
Q psy12350 151 VGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 151 ~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
.....| .||.|+|..+
T Consensus 154 -~~~~a~-----~vV~AdG~~S 169 (392)
T PRK08773 154 -RRLEAA-----LAIAADGAAS 169 (392)
T ss_pred -CEEEeC-----EEEEecCCCc
Confidence 345667 9999999554
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.8e-06 Score=73.98 Aligned_cols=73 Identities=25% Similarity=0.402 Sum_probs=51.4
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP 947 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~ 947 (1129)
||+|||||.+|+|+|..|++.+++||++++.+..++. .+.......+.+.. .+|+++.+ ++++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~------------~gV~v~~~~~v~~i~~ 68 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRK------------RGVEVHTNTKVKEIEK 68 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHH------------TTEEEEESEEEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHH------------CCCEEEeCCEEEEEEE
Confidence 6999999999999999999999999999998876632 22223222221111 26777665 777754
Q ss_pred --Cc--EEecCC
Q psy12350 948 --TG--VRFQDG 955 (1129)
Q Consensus 948 --~~--V~~~dG 955 (1129)
++ |+|+||
T Consensus 69 ~~~~~~V~~~~g 80 (80)
T PF00070_consen 69 DGDGVEVTLEDG 80 (80)
T ss_dssp ETTSEEEEEETS
T ss_pred eCCEEEEEEecC
Confidence 34 777776
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.5e-05 Score=93.02 Aligned_cols=139 Identities=14% Similarity=0.152 Sum_probs=75.5
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCC-CCCCCCC-ccCcccccccccCCccccccCCCC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTG-RDQYGLP-VHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~-~~~~~~~-~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
||+||||||||+++|..|++ .|++|+|+|+++.+||.+.+..... ....++. .....|... ....+++.+
T Consensus 1 DviIiGaG~AGl~~A~~la~--~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 72 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR--PGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDV------YEYRFPKQP 72 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCc------eEEecCCcc
Confidence 69999999999999999998 6799999999988887443211100 0000000 000011100 000111110
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
...........+..+.+++.+.+...++ .+. +++|+.+.... .+.|.++. .+ ......+ .||.|+
T Consensus 73 ~~~~~~~~~i~~~~l~~~l~~~~~~~gv--~~~-~~~v~~i~~~~--~~~~~v~~---~~--g~~~~a~-----~VI~A~ 137 (388)
T TIGR01790 73 RKLGTAYGSVDSTRLHEELLQKCPEGGV--LWL-ERKAIHAEADG--VALSTVYC---AG--GQRIQAR-----LVIDAR 137 (388)
T ss_pred hhcCCceeEEcHHHHHHHHHHHHHhcCc--EEE-ccEEEEEEecC--CceeEEEe---CC--CCEEEeC-----EEEECC
Confidence 0000000124678888999888887765 453 56777765421 12233322 11 2345667 999999
Q ss_pred ccCC
Q psy12350 169 GHVT 172 (1129)
Q Consensus 169 G~~~ 172 (1129)
|..+
T Consensus 138 G~~s 141 (388)
T TIGR01790 138 GFGP 141 (388)
T ss_pred CCch
Confidence 9544
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.2e-05 Score=88.85 Aligned_cols=42 Identities=24% Similarity=0.584 Sum_probs=36.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc-eEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG-TWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG-~w~ 51 (1129)
..||+|||||+||++||..|++. ++++|+|+||+..+|| .|.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~-~g~kV~viEk~~~~GGG~~~ 134 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKN-PNVKVAIIEQSVSPGGGAWL 134 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHc-CCCeEEEEecCcccccceee
Confidence 46999999999999999999963 3799999999988866 554
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.1e-05 Score=95.98 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=80.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc---eEecCCCCC--CCCCCCCc----cCccccccccc-C
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG---TWVYTEQTG--RDQYGLPV----HSSMYKSLKTN-L 77 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG---~w~~~~~~~--~~~~~~~~----~~~~y~~l~~~-~ 77 (1129)
...+|+||||||+||++|..|++ .|++|+|+||++.+.. .+...++.- .+..|+.. ....+...... .
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~--~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 99 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQ--QGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLR 99 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeC
Confidence 34799999999999999999999 6799999999876532 122111100 00111100 00000000000 0
Q ss_pred CccccccCCCCCCCCCCC--CCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEE
Q psy12350 78 PKEIMELSGYHHKGHPDK--SYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL 155 (1129)
Q Consensus 78 ~~~~~~~~d~~~~~~~~~--~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1129)
......+...+......+ ...+...+.++|.+.+.+.+. ..++++++|++++... +++.+.+.+ .+......
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~-v~v~~~~~v~~i~~~~---~~v~v~~~~--~~g~~~i~ 173 (547)
T PRK08132 100 DEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPN-IDLRWKNKVTGLEQHD---DGVTLTVET--PDGPYTLE 173 (547)
T ss_pred CCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCC-cEEEeCCEEEEEEEcC---CEEEEEEEC--CCCcEEEE
Confidence 011112110000000001 113566777888887776531 3799999999987532 334443332 12222456
Q ss_pred ecceeeeEEEEecccCC
Q psy12350 156 FDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~ 172 (1129)
.| +||.|.|..+
T Consensus 174 ad-----~vVgADG~~S 185 (547)
T PRK08132 174 AD-----WVIACDGARS 185 (547)
T ss_pred eC-----EEEECCCCCc
Confidence 77 9999999544
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.5e-05 Score=96.18 Aligned_cols=148 Identities=14% Similarity=0.170 Sum_probs=78.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc---CceEecCCCCC--CCCCCCC--c--cCcccccccccCCcc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV---GGTWVYTEQTG--RDQYGLP--V--HSSMYKSLKTNLPKE 80 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~---GG~w~~~~~~~--~~~~~~~--~--~~~~y~~l~~~~~~~ 80 (1129)
.+|+||||||+||++|..|++ .|++|+|+||.+.. |......++.- .+..|+. . ....+..........
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~--~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 80 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL--AGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDT 80 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccc
Confidence 689999999999999999999 67999999997653 11111111000 0111210 0 000000000000000
Q ss_pred ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEeccee
Q psy12350 81 IMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQV 160 (1129)
Q Consensus 81 ~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 160 (1129)
...+...+.+ .+.....+...+.+.|.+.++..++ .++++++|++++... ++..+++.+ .+.......|
T Consensus 81 ~~~~~~~~~~-~~~~~~i~q~~le~~L~~~~~~~gv--~v~~~~~v~~i~~~~---~~v~v~~~~--~~g~~~i~a~--- 149 (493)
T PRK08244 81 RLDFSALDTS-SNYTLFLPQAETEKVLEEHARSLGV--EIFRGAEVLAVRQDG---DGVEVVVRG--PDGLRTLTSS--- 149 (493)
T ss_pred cCCcccCCCC-CCcEEEecHHHHHHHHHHHHHHcCC--eEEeCCEEEEEEEcC---CeEEEEEEe--CCccEEEEeC---
Confidence 0111111100 0111123566788888888877765 799999999886521 222233321 1112345677
Q ss_pred eeEEEEecccCC
Q psy12350 161 RFFLQLMQGHVT 172 (1129)
Q Consensus 161 ~~~lvvAtG~~~ 172 (1129)
+||.|.|..+
T Consensus 150 --~vVgADG~~S 159 (493)
T PRK08244 150 --YVVGADGAGS 159 (493)
T ss_pred --EEEECCCCCh
Confidence 9999999544
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.2e-05 Score=93.72 Aligned_cols=145 Identities=16% Similarity=0.199 Sum_probs=78.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc---C----ceEecCCCCCCCCCCCC--ccCcccccccccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV---G----GTWVYTEQTGRDQYGLP--VHSSMYKSLKTNLPK 79 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~---G----G~w~~~~~~~~~~~~~~--~~~~~y~~l~~~~~~ 79 (1129)
..+|+||||||+|+++|..|++ .|++|+|+||.+.. + +++..+- .-.+..|+. ........-......
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~--~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~-~~L~~lGl~~~l~~~~~~~~~~~~~~ 79 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELAL--AGVDVAIVERRPNQELVGSRAGGLHARTL-EVLDQRGIADRFLAQGQVAQVTGFAA 79 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCCCCcceeeECHHHH-HHHHHcCcHHHHHhcCCccccceeee
Confidence 4799999999999999999999 67999999997642 1 1111000 000011110 000000000000000
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecce
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQ 159 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 159 (1129)
....+.+++.. .+.........+.+.|.+.+++.++ .++++++|+.++.. ...+.+.. .++ ....+|
T Consensus 80 ~~~~~~~~~~~-~~~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~v~~~-----~~~v~v~~-~~g--~~i~a~-- 146 (488)
T PRK06834 80 TRLDISDFPTR-HNYGLALWQNHIERILAEWVGELGV--PIYRGREVTGFAQD-----DTGVDVEL-SDG--RTLRAQ-- 146 (488)
T ss_pred EecccccCCCC-CCccccccHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEc-----CCeEEEEE-CCC--CEEEeC--
Confidence 01111111110 0111223556778888888888776 89999999998753 22233322 222 356677
Q ss_pred eeeEEEEecccCC
Q psy12350 160 VRFFLQLMQGHVT 172 (1129)
Q Consensus 160 ~~~~lvvAtG~~~ 172 (1129)
+||.|.|..+
T Consensus 147 ---~vVgADG~~S 156 (488)
T PRK06834 147 ---YLVGCDGGRS 156 (488)
T ss_pred ---EEEEecCCCC
Confidence 9999999554
|
|
| >KOG0029|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.8e-06 Score=99.78 Aligned_cols=44 Identities=34% Similarity=0.567 Sum_probs=40.3
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
.++++|+|||||.|||+||++|.+ .|++|+|+|.++.+||-...
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~--~G~~V~VLEARdRvGGRI~t 56 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQD--FGFDVLVLEARDRVGGRIYT 56 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHH--cCCceEEEeccCCcCceeEE
Confidence 346899999999999999999999 77999999999999998774
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.8e-05 Score=92.44 Aligned_cols=150 Identities=13% Similarity=0.104 Sum_probs=77.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc---CceEecCCCCCC--CCCCCCc----c-CcccccccccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV---GGTWVYTEQTGR--DQYGLPV----H-SSMYKSLKTNL 77 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~---GG~w~~~~~~~~--~~~~~~~----~-~~~y~~l~~~~ 77 (1129)
.+++|+|||||||||++|..|++ .|++|+||||.+.+ +|.-...++... +..|+.. . ......+....
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~ 81 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGA--RGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYH 81 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHh--cCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEec
Confidence 34799999999999999999999 67999999998754 222111111000 0112100 0 00111111100
Q ss_pred CccccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHhc-CCcceeEeceeeeeeccccccCCCCceEEeccccCccceEE
Q psy12350 78 PKEIMELSGYHHKG-HPDKSYIAANDVLEYLNDFADNF-NLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL 155 (1129)
Q Consensus 78 ~~~~~~~~d~~~~~-~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1129)
..+.....+++... .......++.++.+.|.+.+... ++ .++++++|+.++... ++..+.++. .+ .....
T Consensus 82 ~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~---~~~~~~v~~-~~--g~~~~ 153 (388)
T PRK07045 82 DKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNV--RLRFETSIERIERDA---DGTVTSVTL-SD--GERVA 153 (388)
T ss_pred CCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCe--eEEeCCEEEEEEECC---CCcEEEEEe-CC--CCEEE
Confidence 11111101111000 00001235667777777665443 34 799999999887531 222122221 22 23455
Q ss_pred ecceeeeEEEEecccCC
Q psy12350 156 FDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~ 172 (1129)
.| .||.|.|..+
T Consensus 154 ~~-----~vIgADG~~S 165 (388)
T PRK07045 154 PT-----VLVGADGARS 165 (388)
T ss_pred CC-----EEEECCCCCh
Confidence 67 8999999554
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.2e-05 Score=94.32 Aligned_cols=37 Identities=32% Similarity=0.636 Sum_probs=33.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
+++|+|||||++||++|..|++ .|++|+||||.+.++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~--~g~~v~v~Er~~~~~ 40 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR--QGIKVKLLEQAAEIG 40 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh--CCCcEEEEeeCcccc
Confidence 4799999999999999999999 679999999987653
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.4e-05 Score=68.12 Aligned_cols=68 Identities=25% Similarity=0.319 Sum_probs=55.0
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCCC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHHK 90 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~~ 90 (1129)
+|+|||||+.|+.+|..|++ .+.+|+++++++.+. +
T Consensus 1 ~vvViGgG~ig~E~A~~l~~--~g~~vtli~~~~~~~-----------------------~------------------- 36 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE--LGKEVTLIERSDRLL-----------------------P------------------- 36 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TTSEEEEEESSSSSS-----------------------T-------------------
T ss_pred CEEEECcCHHHHHHHHHHHH--hCcEEEEEeccchhh-----------------------h-------------------
Confidence 69999999999999999999 669999999977431 0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeecc
Q psy12350 91 GHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYK 131 (1129)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~ 131 (1129)
.-..++.+++.++.++.|+ .+++++.|.++..
T Consensus 37 -------~~~~~~~~~~~~~l~~~gV--~v~~~~~v~~i~~ 68 (80)
T PF00070_consen 37 -------GFDPDAAKILEEYLRKRGV--EVHTNTKVKEIEK 68 (80)
T ss_dssp -------TSSHHHHHHHHHHHHHTTE--EEEESEEEEEEEE
T ss_pred -------hcCHHHHHHHHHHHHHCCC--EEEeCCEEEEEEE
Confidence 0123567777777777777 8999999999886
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.4e-05 Score=92.04 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=77.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc----CceEecCCCCCCCCCCCCccC--cccccccccCCcc-
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV----GGTWVYTEQTGRDQYGLPVHS--SMYKSLKTNLPKE- 80 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~----GG~w~~~~~~~~~~~~~~~~~--~~y~~l~~~~~~~- 80 (1129)
..+||+||||||||++||..|++ .|++|+|+||.... ||.... ...+.+|++... .....++...+..
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~--~G~~VlllEr~~~~~k~cgg~i~~---~~l~~lgl~~~~~~~~i~~~~~~~p~~~ 112 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAK--GGIETFLIERKLDNAKPCGGAIPL---CMVGEFDLPLDIIDRKVTKMKMISPSNV 112 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCCCCccccccH---hHHhhhcCcHHHHHHHhhhheEecCCce
Confidence 35799999999999999999999 67999999997431 222110 000111221100 0001111111111
Q ss_pred ccccCCCCCCCCCCCC--CCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccc----cCccceE
Q psy12350 81 IMELSGYHHKGHPDKS--YIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIP----RDTVGFY 154 (1129)
Q Consensus 81 ~~~~~d~~~~~~~~~~--~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~----~~~~~~~ 154 (1129)
...+.. ...+... ..++..+.++|.+.|.+.|. .++.+ +|+.++......+.+.+.+.+.. .++....
T Consensus 113 ~v~~~~---~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga--~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v 186 (450)
T PLN00093 113 AVDIGK---TLKPHEYIGMVRREVLDSFLRERAQSNGA--TLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTL 186 (450)
T ss_pred EEEecc---cCCCCCeEEEecHHHHHHHHHHHHHHCCC--EEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEE
Confidence 111110 0001111 25888999999999988876 55544 46655421111123334433211 1222345
Q ss_pred EecceeeeEEEEecccCC
Q psy12350 155 LFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 155 ~~d~~~~~~lvvAtG~~~ 172 (1129)
..| .||-|.|..+
T Consensus 187 ~a~-----~VIgADG~~S 199 (450)
T PLN00093 187 EVD-----AVIGADGANS 199 (450)
T ss_pred EeC-----EEEEcCCcch
Confidence 667 8999999443
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.3e-05 Score=91.55 Aligned_cols=37 Identities=30% Similarity=0.457 Sum_probs=32.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..++|+|||||++|+++|..|++ .|++|+|+||.+..
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~--~G~~v~liE~~~~~ 42 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALAR--AGASVALVAPEPPY 42 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc--CCCeEEEEeCCCCC
Confidence 34799999999999999999999 67999999997653
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=98.03 E-value=3e-06 Score=85.34 Aligned_cols=41 Identities=29% Similarity=0.633 Sum_probs=33.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc-eEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG-TWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG-~w~ 51 (1129)
..||+|||||||||+||++|++ .|++|++|||+..+|| .|.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~--~g~kV~v~E~~~~~GGg~~~ 58 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAK--AGLKVAVIERKLSPGGGMWG 58 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHH--HTS-EEEEESSSS-BTTTTS
T ss_pred cCCEEEECCChhHHHHHHHHHH--CCCeEEEEecCCCCCccccc
Confidence 4799999999999999999999 5799999999988875 565
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.2e-05 Score=91.73 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=76.6
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC--------ceEecCCCCC--CCCCCCC--c---cCcccccccc
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG--------GTWVYTEQTG--RDQYGLP--V---HSSMYKSLKT 75 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G--------G~w~~~~~~~--~~~~~~~--~---~~~~y~~l~~ 75 (1129)
+|+||||||||+++|..|++ .|++|+||||.+.++ ......++.- .+..|+. . ....+..+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~--~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 78 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR--SGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHV 78 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc--CCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEE
Confidence 69999999999999999999 679999999987542 1121111000 0011210 0 0001111111
Q ss_pred cCCc--cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcC-CcceeEeceeeeeeccccccCCCCceEEeccccCccc
Q psy12350 76 NLPK--EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFN-LRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVG 152 (1129)
Q Consensus 76 ~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (1129)
.... ....+..-..........+++..+.+.|.+.+.+.+ . .++++++|+.+.... +.+. +.. .+ ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~--~v~~~~~v~~i~~~~---~~~~--v~~-~~--g~ 148 (385)
T TIGR01988 79 SDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNV--TLLCPARVVELPRHS---DHVE--LTL-DD--GQ 148 (385)
T ss_pred EeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCc--EEecCCeEEEEEecC---CeeE--EEE-CC--CC
Confidence 0010 001111000000001122466778888887777765 4 789999999987521 2232 221 12 22
Q ss_pred eEEecceeeeEEEEecccCC
Q psy12350 153 FYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 153 ~~~~d~~~~~~lvvAtG~~~ 172 (1129)
....| .||.|.|..+
T Consensus 149 ~~~~~-----~vi~adG~~S 163 (385)
T TIGR01988 149 QLRAR-----LLVGADGANS 163 (385)
T ss_pred EEEee-----EEEEeCCCCC
Confidence 45667 8999999544
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.9e-06 Score=93.64 Aligned_cols=43 Identities=42% Similarity=0.714 Sum_probs=40.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
++|||||||.|||+||..|+++++..+|+|||+.+.+||....
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 5899999999999999999998888999999999999999883
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.9e-05 Score=90.99 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=32.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
.+|+|||||+|||++|..|++ .|++|+|+||.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~--~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA--RGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCcc
Confidence 689999999999999999999 67999999998754
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.5e-05 Score=90.20 Aligned_cols=35 Identities=29% Similarity=0.462 Sum_probs=32.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
.++|+||||||+|+++|..|++ .|++|+|+||.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~--~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG--SGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh--CCCEEEEEeCCCC
Confidence 3799999999999999999999 6799999999875
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.5e-06 Score=102.16 Aligned_cols=142 Identities=13% Similarity=0.127 Sum_probs=35.7
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCC--CccCcccccccccCCccccccCCCC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGL--PVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~--~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
||+||||||||++||..+++ .|.+|+|+||.+.+||.....-....+.... .....++..+. ..+......+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr--~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~----~~~~~~~~~~ 74 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAAR--AGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFL----NRLRARGGYP 74 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHH--TTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHH----HST-------
T ss_pred CEEEECccHHHHHHHHHHHH--CCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHH----HHHhhhcccc
Confidence 79999999999999999999 6799999999999999876321100000000 00001111111 1111110000
Q ss_pred CCC--CCC-CCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEE
Q psy12350 89 HKG--HPD-KSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQ 165 (1129)
Q Consensus 89 ~~~--~~~-~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv 165 (1129)
.+. .+. ......+.+...+.+.+.+.|+ .+++++.|..+..++ ..-+.+.+.+ .+......-+ .+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv--~v~~~t~v~~v~~~~--~~i~~V~~~~--~~g~~~i~A~-----~~I 143 (428)
T PF12831_consen 75 QEDRYGWVSNVPFDPEVFKAVLDEMLAEAGV--EVLLGTRVVDVIRDG--GRITGVIVET--KSGRKEIRAK-----VFI 143 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc--ccccccccccccccc--cccccccccc--cccccccccc-----ccc
Confidence 000 000 0123444556666777766666 899999999887632 1113333322 1122333444 789
Q ss_pred Eecc
Q psy12350 166 LMQG 169 (1129)
Q Consensus 166 vAtG 169 (1129)
-|||
T Consensus 144 DaTG 147 (428)
T PF12831_consen 144 DATG 147 (428)
T ss_dssp ----
T ss_pred cccc
Confidence 9999
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.3e-05 Score=89.47 Aligned_cols=34 Identities=32% Similarity=0.503 Sum_probs=31.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
.+|+||||||+|+++|..|++ .|++|+|+||.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAG--SGLKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCc
Confidence 799999999999999999999 6799999999865
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.1e-05 Score=87.08 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=37.0
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w 780 (1129)
...++|||+|.+|+.||..|.+.| +++.++||++.+||.-
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G--~~v~LVEKepsiGGrm 163 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMG--FKVYLVEKEPSIGGRM 163 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcC--CeEEEEecCCcccccH
Confidence 456789999999999999999999 9999999999999964
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.2e-05 Score=89.30 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=31.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
+.+|+||||||+||++|..|++ .|++|+|+||++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~--~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL--AGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh--cCCCEEEEEcCCc
Confidence 3689999999999999999999 6799999999864
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.7e-05 Score=89.84 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=31.7
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
++|+|||||++|+++|..|++ .|++|+|+||.+..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~ 35 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR--YGHEPTLIERAPEL 35 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH--CCCceEEEeCCCCc
Confidence 489999999999999999999 67999999998654
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.6e-05 Score=90.11 Aligned_cols=134 Identities=13% Similarity=0.217 Sum_probs=73.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc-----CceEecCCCCCCCCCCCCccCcccccccccCCccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV-----GGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIME 83 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~-----GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~ 83 (1129)
.+||+||||||||+++|..|++ .|++|+|+|+.+.. .|.|.-. ....|+ .+.+....+.....
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~--~Gl~V~liE~~~~~~~p~~~g~w~~~----l~~lgl------~~~l~~~w~~~~v~ 95 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSE--AGLSVCCIDPSPLSIWPNNYGVWVDE----FEALGL------LDCLDTTWPGAVVY 95 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHH--CCCeEEEeccCccchhccccchHHHH----HHHCCc------HHHHHhhCCCcEEE
Confidence 4799999999999999999999 67999999996532 2333200 000010 00000111111111
Q ss_pred cCCC-CC-CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceee
Q psy12350 84 LSGY-HH-KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVR 161 (1129)
Q Consensus 84 ~~d~-~~-~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 161 (1129)
+.+. .. ... .-...++.++.+++.+.+...++ .+. +++|++|+... +.+. +.. .+ +.....|
T Consensus 96 ~~~~~~~~~~~-~y~~V~R~~L~~~Ll~~~~~~GV--~~~-~~~V~~I~~~~---~~~~--V~~-~d--G~~i~A~---- 159 (447)
T PLN02463 96 IDDGKKKDLDR-PYGRVNRKKLKSKMLERCIANGV--QFH-QAKVKKVVHEE---SKSL--VVC-DD--GVKIQAS---- 159 (447)
T ss_pred EeCCCCccccC-cceeEEHHHHHHHHHHHHhhcCC--EEE-eeEEEEEEEcC---CeEE--EEE-CC--CCEEEcC----
Confidence 1000 00 000 01124677888888887777665 443 56888876521 2222 221 12 2345677
Q ss_pred eEEEEecccC
Q psy12350 162 FFLQLMQGHV 171 (1129)
Q Consensus 162 ~~lvvAtG~~ 171 (1129)
.||.|+|..
T Consensus 160 -lVI~AdG~~ 168 (447)
T PLN02463 160 -LVLDATGFS 168 (447)
T ss_pred -EEEECcCCC
Confidence 999999954
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.1e-05 Score=89.35 Aligned_cols=148 Identities=15% Similarity=0.100 Sum_probs=76.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC---ceEecCCCCC--CCCCCC---------CccCcccccccc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG---GTWVYTEQTG--RDQYGL---------PVHSSMYKSLKT 75 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G---G~w~~~~~~~--~~~~~~---------~~~~~~y~~l~~ 75 (1129)
++|+|||||+|||++|..|++ .|++|+||||.+.+. ......++.- ....|+ +.....+...
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~-- 76 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQ--RGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNR-- 76 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcC--
Confidence 489999999999999999999 679999999987542 1111111100 001111 1111100000
Q ss_pred cCCccccccCCCCCCC-CCCC-CCCCHHHHHHHHHHHHHh-cCCcceeEeceeeeeeccccccCCCCceEEeccccCccc
Q psy12350 76 NLPKEIMELSGYHHKG-HPDK-SYIAANDVLEYLNDFADN-FNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVG 152 (1129)
Q Consensus 76 ~~~~~~~~~~d~~~~~-~~~~-~~~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (1129)
..+.+...+ ..... ...+ ...++.++.+.|.+.+.+ .+. ..|+++++|+.++... ++..+.+.+...++..
T Consensus 77 -~g~~~~~~~-~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~~---~~~~~~~~~~~~g~~~ 150 (413)
T PRK07538 77 -HGQRIWSEP-RGLAAGYDWPQYSIHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQDA---DVTVVFLGDRAGGDLV 150 (413)
T ss_pred -CCCEEeecc-CCcccCCCCceEEEEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEecC---CceEEEEeccCCCccc
Confidence 000010000 00000 0000 124677787777666543 342 2699999999987521 2223333322222334
Q ss_pred eEEecceeeeEEEEecccCC
Q psy12350 153 FYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 153 ~~~~d~~~~~~lvvAtG~~~ 172 (1129)
....| .||-|.|..|
T Consensus 151 ~~~ad-----lvIgADG~~S 165 (413)
T PRK07538 151 SVRGD-----VLIGADGIHS 165 (413)
T ss_pred eEEee-----EEEECCCCCH
Confidence 56677 8999999554
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.8e-06 Score=93.62 Aligned_cols=44 Identities=27% Similarity=0.591 Sum_probs=40.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQ 55 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~ 55 (1129)
|||+|+|||.|||+||..|++ .|++|+|+|+++.+||.+.....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~--~g~~vt~~ea~~~~GGk~~s~~~ 44 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELAD--AGYDVTLYEARDRLGGKVASWRD 44 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHh--CCCceEEEeccCccCceeeeeec
Confidence 589999999999999999999 77999999999999999885443
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.2e-05 Score=90.18 Aligned_cols=136 Identities=14% Similarity=0.141 Sum_probs=74.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc---CceEecCCCCCCCCCCCCccCcccccccccCCccccccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV---GGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELS 85 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~---GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~ 85 (1129)
.+||+||||||||+++|..|++ .|++|+|+|+...+ +|+|.... ...|+. +.+....+....-++
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak--~Gl~V~LIe~~~p~~~n~GvW~~~l----~~lgl~------~~i~~~w~~~~v~~~ 175 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAK--LGLNVGLIGPDLPFTNNYGVWEDEF----KDLGLE------DCIEHVWRDTIVYLD 175 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHh--CCCcEEEecCcccCCCccccchhHH----HhcCcH------HHHHhhcCCcEEEec
Confidence 4799999999999999999999 67999999986443 34553100 000110 000000111111111
Q ss_pred CCCCCCCCCCC--CCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeE
Q psy12350 86 GYHHKGHPDKS--YIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163 (1129)
Q Consensus 86 d~~~~~~~~~~--~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 163 (1129)
+.... ..... .+++..+.+.+.+.+.+.+. .+ ++++|+.+.... +.+.+.. ..+ ......+ .
T Consensus 176 ~~~~~-~~~~~Yg~V~R~~L~~~Ll~~a~~~GV--~~-~~~~V~~I~~~~---~~~~vv~--~~d--G~~i~A~-----l 239 (529)
T PLN02697 176 DDKPI-MIGRAYGRVSRTLLHEELLRRCVESGV--SY-LSSKVDRITEAS---DGLRLVA--CED--GRVIPCR-----L 239 (529)
T ss_pred CCcee-eccCcccEEcHHHHHHHHHHHHHhcCC--EE-EeeEEEEEEEcC---CcEEEEE--EcC--CcEEECC-----E
Confidence 10000 00111 25677888888887777765 44 678888876421 2222211 111 1334566 8
Q ss_pred EEEecccCC
Q psy12350 164 LQLMQGHVT 172 (1129)
Q Consensus 164 lvvAtG~~~ 172 (1129)
||+|+|..+
T Consensus 240 VI~AdG~~S 248 (529)
T PLN02697 240 ATVASGAAS 248 (529)
T ss_pred EEECCCcCh
Confidence 999999655
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.8e-05 Score=90.42 Aligned_cols=36 Identities=28% Similarity=0.595 Sum_probs=31.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCC-ceEEEEcccCCcC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSG-FTCTTFEQTDNVG 47 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~-~~v~v~E~~~~~G 47 (1129)
++|+|||||+|||++|..|++ .| .+|+||||.+.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~--~g~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCK--HSHLNVQLFEAAPAFG 37 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHh--cCCCCEEEEecCCcCC
Confidence 479999999999999999999 55 5999999987653
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.5e-05 Score=87.81 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=32.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..+|+||||||||+++|..|++ .|++|+|+||++..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQ--SGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCc
Confidence 4799999999999999999999 67999999998764
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00012 Score=85.46 Aligned_cols=36 Identities=33% Similarity=0.518 Sum_probs=32.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
+.++|+|||||++||++|..|++ .|++|+||||.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRR--AGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCC
Confidence 45899999999999999999999 6799999999763
|
|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.88 E-value=7.5e-05 Score=89.40 Aligned_cols=40 Identities=30% Similarity=0.469 Sum_probs=34.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC--cCce
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN--VGGT 49 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~--~GG~ 49 (1129)
...||+|||||+|||+||..|++ .|.+|+|+||.+. .||.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~--~G~~V~vlEk~~~~~~GG~ 44 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAARE--AGASVLLLEAAPREWRGGN 44 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcCCCcc
Confidence 34799999999999999999999 5689999999864 5654
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.9e-05 Score=87.17 Aligned_cols=35 Identities=26% Similarity=0.541 Sum_probs=31.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+.++|+||||||+|+++|..|++ .|++|+|+|+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~--~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQ--HGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 35899999999999999999999 679999999975
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.3e-05 Score=95.78 Aligned_cols=42 Identities=36% Similarity=0.617 Sum_probs=38.7
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
++|+|||||.|||+||+.|++.|.+++|+|||+++.+||.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~ 42 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQ 42 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEE
Confidence 479999999999999999999665599999999999999887
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00011 Score=87.41 Aligned_cols=38 Identities=26% Similarity=0.467 Sum_probs=34.1
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCC-ceEEEEcccCCcCceE
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSG-FTCTTFEQTDNVGGTW 50 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~-~~v~v~E~~~~~GG~w 50 (1129)
||+|||||.||++||..+++ .| .+|+|+||.+..||.-
T Consensus 1 DVvVVG~G~AGl~AA~~aa~--~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKK--AGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHH--cCCccEEEEecCCCCCCcc
Confidence 69999999999999999999 67 8999999988877653
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=8.2e-05 Score=88.76 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=32.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..+|+||||||+||++|..|++ .|.+|+|+||.+.+
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar--~Gi~V~llEr~~~~ 40 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQL--CGLNTVIVDKSDGP 40 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHH--cCCCEEEEeCCCcc
Confidence 4799999999999999999999 66999999998764
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=8.9e-05 Score=86.33 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=30.7
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+||||||+|+++|..|++ .|++|+|||+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~--~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK--QGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh--CCCcEEEEcCCC
Confidence 699999999999999999999 679999999864
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.5e-05 Score=86.05 Aligned_cols=148 Identities=14% Similarity=0.174 Sum_probs=80.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc-CC---cCceEecCCCCC--CCCCCC-C----ccCcccccccccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT-DN---VGGTWVYTEQTG--RDQYGL-P----VHSSMYKSLKTNL 77 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~-~~---~GG~w~~~~~~~--~~~~~~-~----~~~~~y~~l~~~~ 77 (1129)
.++|+||||||+||++|..|++ .|++|+|+||. +. .|-.....++.- ....|+ + .....+......-
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~--~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~ 79 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR--AGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDD 79 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEec
Confidence 3789999999999999999999 66999999997 22 120111000000 001122 1 0111222111111
Q ss_pred Cc-cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcC-CcceeEeceeeeeeccccccCCCCceEEeccccCccceEE
Q psy12350 78 PK-EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFN-LRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL 155 (1129)
Q Consensus 78 ~~-~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1129)
.. ....+........+.....+..++.+-|.+.+...+ + .++++++|+.++.. ...+++. +.. .+..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v--~~~~~~~v~~~~~~-----~~~v~v~-l~~-dG~~~~ 150 (387)
T COG0654 80 GGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNV--TLRFGAEVEAVEQD-----GDGVTVT-LSF-DGETLD 150 (387)
T ss_pred CCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCc--EEEcCceEEEEEEc-----CCceEEE-EcC-CCcEEe
Confidence 11 111111111111111233477888888888887765 4 89999999998863 2233322 221 223667
Q ss_pred ecceeeeEEEEecccCC
Q psy12350 156 FDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~ 172 (1129)
+| .||-|-|.+|
T Consensus 151 a~-----llVgADG~~S 162 (387)
T COG0654 151 AD-----LLVGADGANS 162 (387)
T ss_pred cC-----EEEECCCCch
Confidence 77 8999999544
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=5e-05 Score=89.26 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=30.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+|||||++|+++|..|++ .|++|+||||.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG--SGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 689999999999999999999 679999999976
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.4e-05 Score=98.56 Aligned_cols=134 Identities=14% Similarity=0.153 Sum_probs=75.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC---cCceEecCCCCCCCCCCCCccCcccccccccCCc-cccc--
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN---VGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPK-EIME-- 83 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~---~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~-~~~~-- 83 (1129)
++|+|||||||||++|..|++.++|++|+|+||++. +|.-+..+++. ...+.... ......+...... ..+.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~-l~~L~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDAT-LGNLRAAD-PVSAAAIGDAFNHWDDIDVH 78 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHH-HHHHHhcC-HHHHHHHHHhcccCCceEEE
Confidence 589999999999999999999655899999999875 34333322211 00000000 0000000000000 0000
Q ss_pred cCCCCCCCCCCCC--CCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceee
Q psy12350 84 LSGYHHKGHPDKS--YIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVR 161 (1129)
Q Consensus 84 ~~d~~~~~~~~~~--~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 161 (1129)
+.+...... ... -..+.++.+.|.+.+.+.++ .++++++|+.+.. ....+|
T Consensus 79 ~~g~~~~~~-g~~~~~i~R~~L~~~L~e~a~~~GV--~i~~g~~v~~i~~--------------------~~~~~D---- 131 (765)
T PRK08255 79 FKGRRIRSG-GHGFAGIGRKRLLNILQARCEELGV--KLVFETEVPDDQA--------------------LAADAD---- 131 (765)
T ss_pred ECCEEEEEC-CeeEecCCHHHHHHHHHHHHHHcCC--EEEeCCccCchhh--------------------hhcCCC----
Confidence 000000000 111 24788999999999988876 8999998875431 012367
Q ss_pred eEEEEecccCCC
Q psy12350 162 FFLQLMQGHVTL 173 (1129)
Q Consensus 162 ~~lvvAtG~~~~ 173 (1129)
.||.|+|..+.
T Consensus 132 -~VVgADG~~S~ 142 (765)
T PRK08255 132 -LVIASDGLNSR 142 (765)
T ss_pred -EEEEcCCCCHH
Confidence 99999996553
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0002 Score=86.23 Aligned_cols=39 Identities=23% Similarity=0.509 Sum_probs=35.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
..||+|||||.||++||..+++ .|.+|+|+||.+.+||.
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~--~Ga~VivlEK~~~~GG~ 99 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKD--AGMNPVILEKMPVAGGN 99 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCc
Confidence 4699999999999999999999 56899999999888874
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=7.6e-05 Score=87.50 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=30.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcC-CCCceEEEEccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEP-GSGFTCTTFEQT 43 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~-~~~~~v~v~E~~ 43 (1129)
.++|+||||||||+++|..|++. ..|++|+||||.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 47999999999999999999993 017999999995
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.4e-05 Score=89.01 Aligned_cols=143 Identities=13% Similarity=0.095 Sum_probs=75.5
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCC-ceEEEEcccCCc----C----ceEecCCC-CCCCCCCCCcc----Cccccccccc
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSG-FTCTTFEQTDNV----G----GTWVYTEQ-TGRDQYGLPVH----SSMYKSLKTN 76 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~-~~v~v~E~~~~~----G----G~w~~~~~-~~~~~~~~~~~----~~~y~~l~~~ 76 (1129)
||+||||||||+++|..|++ .| ++|+|+||.+.. | |.....+. .-.+..|+... ..........
T Consensus 1 dv~IvGaG~aGl~~A~~L~~--~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~ 78 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR--LGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVS 78 (382)
T ss_pred CEEEECccHHHHHHHHHHhc--CCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEE
Confidence 69999999999999999999 88 999999997643 1 11110000 00001121000 0000000000
Q ss_pred C--Ccccccc--CCCCCCCCCCCCCCCHHHHHHHHHHHHHhc-CCcceeEeceeeeeeccccccCCCCceEEeccccCcc
Q psy12350 77 L--PKEIMEL--SGYHHKGHPDKSYIAANDVLEYLNDFADNF-NLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTV 151 (1129)
Q Consensus 77 ~--~~~~~~~--~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 151 (1129)
. ......+ +++..+ +......+.++.+.|.+.+... +. .++++++|+.+.... +++.+.. .+ .
T Consensus 79 ~~~~~~~~~~~~~~~~~~--~~~~~i~r~~l~~~L~~~~~~~~gv--~~~~~~~v~~i~~~~---~~~~v~~---~~--g 146 (382)
T TIGR01984 79 DQGHFGATHLRASEFGLP--ALGYVVELADLGQALLSRLALLTNI--QLYCPARYKEIIRNQ---DYVRVTL---DN--G 146 (382)
T ss_pred cCCCCceEEechhhcCCC--ccEEEEEcHHHHHHHHHHHHhCCCc--EEEcCCeEEEEEEcC---CeEEEEE---CC--C
Confidence 0 0000001 111100 0011246678888888877763 55 788999999986521 2333322 12 2
Q ss_pred ceEEecceeeeEEEEecccCC
Q psy12350 152 GFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 152 ~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
....+| .||.|.|..+
T Consensus 147 ~~~~ad-----~vV~AdG~~S 162 (382)
T TIGR01984 147 QQLRAK-----LLIAADGANS 162 (382)
T ss_pred CEEEee-----EEEEecCCCh
Confidence 345678 9999999543
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.8e-05 Score=94.36 Aligned_cols=42 Identities=36% Similarity=0.559 Sum_probs=39.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
.+||+|||||++||+||..|++ .|++|+||||++.+||.+..
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~--~G~~V~VlE~~~~~GG~a~t 44 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLAR--AGLKVTVLEKNDRVGGRART 44 (487)
T ss_pred CccEEEECCChhHHHHHHHHHh--CCCEEEEEEecCCCCcceEE
Confidence 4899999999999999999999 77999999999999998874
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=9.1e-05 Score=85.55 Aligned_cols=136 Identities=16% Similarity=0.239 Sum_probs=74.2
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc--Cc--eEecCCCCCCCCCCCCccCcccccccccCCccccccCC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV--GG--TWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSG 86 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~--GG--~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d 86 (1129)
||+||||||||+++|.+|++...+.+|+|+|++... .. +|.+....-.. . .+.....|+......+.......+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~-~-~~~v~~~w~~~~v~~~~~~~~~~~ 78 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGP-L-DSLVSHRWSGWRVYFPDGSRILID 78 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccc-h-HHHHheecCceEEEeCCCceEEcc
Confidence 699999999999999999555588999999998766 22 33321111000 0 000111122111111111111111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
++ -.......+.+++.+.+...+ .++++++|++|+... ....+.. .++ ..+..+ .||-
T Consensus 79 ~~------Y~~i~~~~f~~~l~~~~~~~~---~~~~~~~V~~i~~~~-----~~~~v~~-~~g--~~i~a~-----~VvD 136 (374)
T PF05834_consen 79 YP------YCMIDRADFYEFLLERAAAGG---VIRLNARVTSIEETG-----DGVLVVL-ADG--RTIRAR-----VVVD 136 (374)
T ss_pred cc------eEEEEHHHHHHHHHHHhhhCC---eEEEccEEEEEEecC-----ceEEEEE-CCC--CEEEee-----EEEE
Confidence 10 013577888888887777332 467889999987632 1112221 122 244455 8899
Q ss_pred eccc
Q psy12350 167 MQGH 170 (1129)
Q Consensus 167 AtG~ 170 (1129)
|+|.
T Consensus 137 a~g~ 140 (374)
T PF05834_consen 137 ARGP 140 (374)
T ss_pred CCCc
Confidence 9993
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >KOG2755|consensus | Back alignment and domain information |
|---|
Probab=97.78 E-value=7e-05 Score=76.55 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=30.1
Q ss_pred cccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 743 IVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 743 ~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
+|+|+|.+|.++|.+|+..-|+.++.++..++-+
T Consensus 3 ivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 3 IVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred EEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 6899999999999999999988999999876543
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00013 Score=85.77 Aligned_cols=33 Identities=30% Similarity=0.553 Sum_probs=30.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT 43 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~ 43 (1129)
.++|+||||||+|+++|..|++ .|++|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~--~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE--SDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh--CCCEEEEEcCC
Confidence 3799999999999999999999 67999999996
|
|
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.4e-05 Score=92.52 Aligned_cols=43 Identities=35% Similarity=0.462 Sum_probs=39.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCC--CceEEEEcccCCcCceEec
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGS--GFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~--~~~v~v~E~~~~~GG~w~~ 52 (1129)
++|+|||||.|||+||..|.+.++ |++|+|||+++.+||.+..
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 689999999999999999999533 7999999999999999873
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.7e-05 Score=93.15 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=37.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCC----CCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPG----SGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~----~~~~v~v~E~~~~~GG~w~ 51 (1129)
++|+|||||.|||+||..|.+.+ .+++|+|+|+++.+||.+.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 47999999999999999999853 3589999999999999987
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=97.76 E-value=1.3e-05 Score=66.85 Aligned_cols=41 Identities=32% Similarity=0.430 Sum_probs=36.1
Q ss_pred ccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCC
Q psy12350 744 VDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHI 786 (1129)
Q Consensus 744 iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~ 786 (1129)
|||+|++||++|..|.+.| .+|+|||+++.+||.|.....+
T Consensus 1 IiGaG~sGl~aA~~L~~~g--~~v~v~E~~~~~GG~~~~~~~~ 41 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG--YRVTVFEKNDRLGGRARSFRIP 41 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT--SEEEEEESSSSSSGGGCEEEET
T ss_pred CEeeCHHHHHHHHHHHHCC--CcEEEEecCcccCcceeEEEEC
Confidence 7899999999999999998 9999999999999998855443
|
... |
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00017 Score=84.46 Aligned_cols=149 Identities=9% Similarity=0.163 Sum_probs=78.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCC--CceEEEEcccCCcC---ceEecCCCCCC----CCCCC-CccCcccccccc--
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGS--GFTCTTFEQTDNVG---GTWVYTEQTGR----DQYGL-PVHSSMYKSLKT-- 75 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~--~~~v~v~E~~~~~G---G~w~~~~~~~~----~~~~~-~~~~~~y~~l~~-- 75 (1129)
+.++|+||||||+|+++|..|++.|. |.+|+|+|+.+... ......-.... +..|+ +.....+...+.
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~ 89 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQ 89 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEec
Confidence 34799999999999999999999552 46899999975321 00000000000 01111 000000000000
Q ss_pred --cCCccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccce
Q psy12350 76 --NLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGF 153 (1129)
Q Consensus 76 --~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1129)
..........++..+. .....+...+.+.|.+.+...++ .++++++|+.++.. .+++.++..+ .+....
T Consensus 90 ~~~~g~~~~~~~~~~~~~--~g~~v~r~~l~~~L~~~~~~~g~--~~~~~~~v~~~~~~---~~~v~v~~~~--~~g~~~ 160 (398)
T PRK06996 90 RGHFGRTLIDRDDHDVPA--LGYVVRYGSLVAALARAVRGTPV--RWLTSTTAHAPAQD---ADGVTLALGT--PQGART 160 (398)
T ss_pred CCCCceEEecccccCCCc--CEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeeeeeeec---CCeEEEEECC--CCcceE
Confidence 0001111222222110 11124667888888888877765 78899999888642 1333333221 111234
Q ss_pred EEecceeeeEEEEeccc
Q psy12350 154 YLFDLQVRFFLQLMQGH 170 (1129)
Q Consensus 154 ~~~d~~~~~~lvvAtG~ 170 (1129)
...| .||-|.|.
T Consensus 161 i~a~-----lvIgADG~ 172 (398)
T PRK06996 161 LRAR-----IAVQAEGG 172 (398)
T ss_pred Eeee-----EEEECCCC
Confidence 6677 89999994
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00024 Score=87.43 Aligned_cols=159 Identities=13% Similarity=0.089 Sum_probs=80.2
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc---CceEecCCCC--CCCCCCC---------CccC-cccc
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV---GGTWVYTEQT--GRDQYGL---------PVHS-SMYK 71 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~---GG~w~~~~~~--~~~~~~~---------~~~~-~~y~ 71 (1129)
....+|+||||||+||++|..|++. .|.+|+|+||.+.. |-.....++. -.+.+|+ +... ..|.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~-~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~ 108 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAF-PDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWK 108 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcC-CCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEc
Confidence 3457999999999999999999992 16999999997642 2111111100 0011121 1111 1111
Q ss_pred cccccCCcccc---ccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccc
Q psy12350 72 SLKTNLPKEIM---ELSGYHHKGHPDK-SYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIP 147 (1129)
Q Consensus 72 ~l~~~~~~~~~---~~~d~~~~~~~~~-~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~ 147 (1129)
.- ......+. .+.+.+......+ ...+...+.+.|.+.+.+.+....++++++|+.++.........++++.+..
T Consensus 109 ~~-~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~ 187 (634)
T PRK08294 109 PD-PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTD 187 (634)
T ss_pred CC-CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECC
Confidence 00 00000000 0111110000011 2235566778888877776543467899999988653211111233333221
Q ss_pred ---cCccceEEecceeeeEEEEecccCC
Q psy12350 148 ---RDTVGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 148 ---~~~~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
.++..+...| +||-|-|..|
T Consensus 188 ~~~~g~~~tv~A~-----~lVGaDGa~S 210 (634)
T PRK08294 188 GEHEGEEETVRAK-----YVVGCDGARS 210 (634)
T ss_pred CCCCCceEEEEeC-----EEEECCCCch
Confidence 1222355667 9999999554
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.6e-05 Score=88.10 Aligned_cols=39 Identities=33% Similarity=0.532 Sum_probs=32.9
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
||+|||+|.|||+||..|++ .|.+|+|+||.+.+||...
T Consensus 1 DVvVIG~G~AGl~AA~~Aae--~G~~V~lvek~~~~gg~~~ 39 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAE--AGAKVLLVEKGPRLGGSSA 39 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHH--TTT-EEEEESSSGGGSGGG
T ss_pred CEEEECCCHHHHHHHHHHhh--hcCeEEEEEeecccccccc
Confidence 69999999999999999999 6689999999998777433
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.72 E-value=5e-05 Score=84.19 Aligned_cols=41 Identities=34% Similarity=0.617 Sum_probs=38.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.++++|||||+|||+||+.|++ .|++|.++||++.+||...
T Consensus 124 ~~svLVIGGGvAGitAAl~La~--~G~~v~LVEKepsiGGrma 164 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELAD--MGFKVYLVEKEPSIGGRMA 164 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHH--cCCeEEEEecCCcccccHH
Confidence 4789999999999999999999 7799999999999999865
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00017 Score=83.00 Aligned_cols=42 Identities=29% Similarity=0.586 Sum_probs=36.1
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc--eEec
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG--TWVY 52 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG--~w~~ 52 (1129)
||+|||||+||+++|..|++.-++++|+|+|+.+.+|| +|.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~ 44 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSF 44 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCccccee
Confidence 69999999999999999998423799999999988887 5554
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.4e-05 Score=90.79 Aligned_cols=39 Identities=41% Similarity=0.753 Sum_probs=36.7
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
||+|||||.|||+||..|++ .|++|+|+|+++.+||.+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~--~G~~v~vlE~~~~~GG~~~ 39 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK--RGHEVTVFEADDQLGGLAA 39 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCcEEEEEeCCCCCCcee
Confidence 69999999999999999999 5699999999999999876
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=6.8e-05 Score=82.48 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=35.5
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
+..+++|||+|++||.||..+.+.| .+|+|||+.+.+|-
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G--~~V~lid~~~k~Gr 40 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAG--RRVLLIDKGPKLGR 40 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcC--CEEEEEecCccccc
Confidence 4567899999999999999999999 99999999998863
|
|
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=3.4e-05 Score=82.08 Aligned_cols=42 Identities=36% Similarity=0.521 Sum_probs=37.2
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.++++|+|||+|.|||+||..|.++ ++||+||.++.+||--+
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r---hdVTLfEA~~rlGGha~ 47 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR---HDVTLFEADRRLGGHAN 47 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc---cceEEEeccccccCccc
Confidence 3568999999999999999999984 59999999999999654
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00022 Score=85.84 Aligned_cols=41 Identities=29% Similarity=0.402 Sum_probs=34.7
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
...+||+|||||..|+++|+.|++ .|++|+|+||++..+|+
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~--rGl~V~LvEk~d~~~Gt 44 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAG--RGLSVLLCEQDDLASAT 44 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCc
Confidence 345899999999999999999999 66999999997544443
|
|
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.66 E-value=8.4e-05 Score=78.59 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=38.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
+|++|||||.+|+..|..|++ .|.+|.|+||++++||.|.-
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~--~gk~VLIvekR~HIGGNaYd 42 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQ--LGKRVLIVEKRNHIGGNAYD 42 (374)
T ss_pred CcEEEECCchhHHHHHHHHHH--cCCEEEEEeccccCCCcccc
Confidence 689999999999999999888 67999999999999999983
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00017 Score=84.08 Aligned_cols=34 Identities=24% Similarity=0.495 Sum_probs=31.6
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
.+|+||||||+|+++|..|++ .|++|+||||.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH--CCCCEEEEECCCC
Confidence 689999999999999999999 6799999999874
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00029 Score=83.84 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=34.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc-CCcCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT-DNVGG 48 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~-~~~GG 48 (1129)
.+||+|||||+||++||..+++ .|.+|+|+|++ +.+|+
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR--~G~kV~LiE~~~d~iG~ 42 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAAR--MGAKTLLLTHNLDTIGQ 42 (618)
T ss_pred cceEEEECchHHHHHHHHHHHH--cCCcEEEEecccccccc
Confidence 4899999999999999999999 67999999997 46775
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.1e-05 Score=91.08 Aligned_cols=45 Identities=33% Similarity=0.485 Sum_probs=39.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCC---CCceEEEEcccCCcCceEecC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPG---SGFTCTTFEQTDNVGGTWVYT 53 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~---~~~~v~v~E~~~~~GG~w~~~ 53 (1129)
.++|+|||||+|||+||+.|++.| .+++|+|||+++.+||.+...
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~ 52 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTS 52 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEE
Confidence 479999999999999999999843 248999999999999988753
|
|
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00022 Score=85.75 Aligned_cols=41 Identities=24% Similarity=0.360 Sum_probs=36.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..||+|||||.|||+||.++++ .|.+|+|+||.+.+||.-.
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae--~G~~VillEK~~~~gG~s~ 60 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAA--AGARVLVLERAAGAGGATA 60 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCccc
Confidence 4799999999999999999999 6689999999888777443
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00016 Score=88.29 Aligned_cols=39 Identities=15% Similarity=0.347 Sum_probs=34.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG 48 (1129)
.||+|||||.|||+||..+++.+++.+|+|+||....||
T Consensus 4 ~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred ccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 699999999999999999998666789999999776554
|
|
| >KOG0685|consensus | Back alignment and domain information |
|---|
Probab=97.62 E-value=6.5e-05 Score=83.93 Aligned_cols=44 Identities=34% Similarity=0.506 Sum_probs=38.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
...||||||||.|||+||.+|.+.| ..+++|||..+.+||-...
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~g-f~~~~IlEa~dRIGGRI~t 63 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENG-FIDVLILEASDRIGGRIHT 63 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhC-CceEEEEEeccccCceEee
Confidence 3569999999999999999999754 5689999999999998773
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00039 Score=81.83 Aligned_cols=35 Identities=34% Similarity=0.635 Sum_probs=31.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
+||+|||||..|+++|.+|++ .|++|+|+||++.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~--~g~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQ--RGYQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCC
Confidence 599999999999999999999 56999999998754
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=97.61 E-value=6.9e-06 Score=86.18 Aligned_cols=32 Identities=25% Similarity=0.658 Sum_probs=29.4
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
+|+|||||.+|+.+|..|++.+.+|++++..+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 69999999999999999999999999996644
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00027 Score=81.90 Aligned_cols=144 Identities=16% Similarity=0.137 Sum_probs=76.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc-------CceEecCCCCC--CCCCCCC--c--cCcccccccc-
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV-------GGTWVYTEQTG--RDQYGLP--V--HSSMYKSLKT- 75 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~-------GG~w~~~~~~~--~~~~~~~--~--~~~~y~~l~~- 75 (1129)
.+|+||||||+|+++|..|++ .|++|+|+|+.+.. |.....+++.- .+..|+- . ....++.+..
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~--~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 79 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ--KGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVV 79 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc--CCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEE
Confidence 589999999999999999999 67999999986321 22222111100 0011110 0 0000111100
Q ss_pred -cCCccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceE
Q psy12350 76 -NLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFY 154 (1129)
Q Consensus 76 -~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1129)
........+.... ..+......+.++.+.|.+-+...+. ..++++++|+++.... +.+.+.. . + ...
T Consensus 80 ~~~g~~~~~~~~~~--~~~~g~~v~r~~L~~~L~~~~~~~~~-v~~~~~~~v~~i~~~~---~~v~v~~---~-~--~~~ 147 (374)
T PRK06617 80 DNKASEILDLRNDA--DAVLGYVVKNSDFKKILLSKITNNPL-ITLIDNNQYQEVISHN---DYSIIKF---D-D--KQI 147 (374)
T ss_pred ECCCceEEEecCCC--CCCcEEEEEHHHHHHHHHHHHhcCCC-cEEECCCeEEEEEEcC---CeEEEEE---c-C--CEE
Confidence 0011111221100 00011234678888888887777641 2678899999886521 2333322 1 1 256
Q ss_pred EecceeeeEEEEecccCC
Q psy12350 155 LFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 155 ~~d~~~~~~lvvAtG~~~ 172 (1129)
..| .||.|-|..|
T Consensus 148 ~ad-----lvIgADG~~S 160 (374)
T PRK06617 148 KCN-----LLIICDGANS 160 (374)
T ss_pred eeC-----EEEEeCCCCc
Confidence 677 9999999654
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.60 E-value=5.6e-05 Score=89.74 Aligned_cols=40 Identities=35% Similarity=0.637 Sum_probs=37.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.+|+|||||.|||+||+.|.+ .|++|+|+|+++.+||-..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~--~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHD--ASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCceee
Confidence 479999999999999999999 6699999999999999877
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00064 Score=81.55 Aligned_cols=37 Identities=30% Similarity=0.475 Sum_probs=31.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
.||+|||||.|||+||..+++. +. |+|+||.+..||.
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~--G~-V~lleK~~~~~g~ 39 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQ--GR-VIVLSKAPVTEGN 39 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhC--CC-EEEEEccCCCCCc
Confidence 5899999999999999999994 45 9999998765543
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00033 Score=78.89 Aligned_cols=37 Identities=27% Similarity=0.439 Sum_probs=28.7
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEE-cccCCcCce
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTF-EQTDNVGGT 49 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~-E~~~~~GG~ 49 (1129)
||+|||||+||.+||.++++ .|.+|+|+ ++.+.+|.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr--~G~~V~Lit~~~d~i~~~ 38 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAAR--MGAKVLLITHNTDTIGEM 38 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TT--EEEEES-GGGTT--
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEEeecccccccc
Confidence 79999999999999999999 67999999 666666654
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=7.4e-05 Score=87.86 Aligned_cols=44 Identities=30% Similarity=0.369 Sum_probs=40.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCC--CCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPG--SGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~--~~~~v~v~E~~~~~GG~w~ 51 (1129)
.+++|+|||||.|||+||.+|.+.+ +|.+|+|||+++.+||.+.
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 3579999999999999999999965 5789999999999999876
|
|
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=97.58 E-value=6.8e-05 Score=85.18 Aligned_cols=40 Identities=18% Similarity=0.388 Sum_probs=37.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
+||+|||||+||+++|..|++ .|.+|+|+|+++.+||.|.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~--~G~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQ--LNKRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCCCCcee
Confidence 589999999999999999998 5689999999999999776
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >KOG2415|consensus | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00018 Score=78.20 Aligned_cols=45 Identities=24% Similarity=0.477 Sum_probs=38.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcC----CCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEP----GSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~----~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
...||||||||||||+||.+|++. +.+.+|.|+||...+||.-..
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS 123 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence 347999999999999999998763 457899999999999987653
|
|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00052 Score=78.31 Aligned_cols=39 Identities=26% Similarity=0.452 Sum_probs=36.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.+||+|||||..|+++|..|.+..++++|+|+||.+.+|
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a 41 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA 41 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence 479999999999999999999977779999999999887
|
|
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.55 E-value=7.4e-05 Score=90.35 Aligned_cols=44 Identities=30% Similarity=0.487 Sum_probs=39.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..++|+|||||.|||+||..|.+.+ |++|+|+|+++.+||.+..
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~-g~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKH-GVNVLVTEARDRVGGNITS 54 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhc-CCCEEEEecCCCCCCceeE
Confidence 4579999999999999999999931 6999999999999998873
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00022 Score=86.86 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=33.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..||+|||||.|||+||..+++.+.+.+|+|+||.+..
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 36999999999999999999986567899999998753
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0007 Score=79.68 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=32.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
..||+|||+|.|||+||..+ . .+.+|+|+||.+..||.
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a-~--~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNL-R--KDLKILMVSKGKLNECN 41 (433)
T ss_pred cccEEEECchHHHHHHHHHh-c--cCCCEEEEecCCCCCCc
Confidence 46999999999999999997 4 36899999998776653
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00038 Score=80.58 Aligned_cols=33 Identities=27% Similarity=0.257 Sum_probs=30.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD 774 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~ 774 (1129)
.+++|||+|.+|+.+|..+.+.| .+|+++|+..
T Consensus 3 ~DviIIG~G~aGl~aA~~la~~g--~~v~vi~~~~ 35 (422)
T PRK05329 3 FDVLVIGGGLAGLTAALAAAEAG--KRVALVAKGQ 35 (422)
T ss_pred CCEEEECccHHHHHHHHHHHHCC--CcEEEEECCC
Confidence 47899999999999999999999 9999999863
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00044 Score=81.94 Aligned_cols=35 Identities=20% Similarity=0.430 Sum_probs=29.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCC--CCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPG--SGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~--~~~~v~v~E~~~ 44 (1129)
++|+||||||+|+++|..|++.. .|++|+|+||++
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 47999999999999999999721 359999999953
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >KOG3851|consensus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00034 Score=73.62 Aligned_cols=38 Identities=18% Similarity=0.394 Sum_probs=30.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
...+|+|||||.+|+++|..+.+.-..-+|.|+|-.++
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 45799999999999999988876433458999997653
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00042 Score=85.27 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=32.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
..||+|||||.|||+||..+++ .|.+|+|+||....|
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae--~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARE--RGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHH--CCCCEEEEeccCCCC
Confidence 3699999999999999999999 668999999987553
|
|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0015 Score=80.03 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=32.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
+.||+|||+|.|||+||..+++ .|.+|+|+||....|
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAE--AGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHH--cCCcEEEEEccCCCC
Confidence 3599999999999999999999 678999999977654
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00054 Score=79.24 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=32.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
++|+|||||++|+++|..|++ .|++|+||||.+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~--~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR--HGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCCEEEEcCCCCC
Confidence 589999999999999999999 67999999998754
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00051 Score=84.21 Aligned_cols=35 Identities=17% Similarity=0.386 Sum_probs=31.4
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
||+|||||.|||+||..+++ .|.+|+|+||....|
T Consensus 1 DVlVVG~G~AGl~AA~~aae--~G~~V~lleK~~~~~ 35 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAK--AGLNTAVISKVYPTR 35 (566)
T ss_pred CEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCC
Confidence 69999999999999999999 568999999977554
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0011 Score=78.99 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=32.6
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
+||+|||||+||+.||..+++ .+.+|+|+|+....+|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~--~G~~v~Lie~~~~~~g~ 38 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAAR--MGAKTLLLTLNLDTIGK 38 (617)
T ss_pred CeEEEECccHHHHHHHHHHHH--CCCCEEEEecccccccC
Confidence 489999999999999999999 66899999997554443
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00011 Score=88.67 Aligned_cols=41 Identities=37% Similarity=0.500 Sum_probs=38.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
+||+|||||.+||+||..|++ .|++|+|+||++.+||.+..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~--~G~~v~vlE~~~~~GG~~~t 42 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAK--RGYRVTLLEQHAQPGGCAGT 42 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCccce
Confidence 689999999999999999999 67999999999999998874
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0011 Score=79.48 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=31.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..+||+|||||++|+++|..|++ .|++|+|+||..
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~--~G~~V~vlEr~~ 76 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAK--DGRRVHVIERDL 76 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHH--cCCeEEEEECcC
Confidence 35799999999999999999999 679999999974
|
|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0014 Score=80.37 Aligned_cols=38 Identities=16% Similarity=0.441 Sum_probs=32.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG 48 (1129)
..||+|||||.|||+||..+++ .|.+|+|+||....||
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~vleK~~~~~g 49 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLAR--AGLSVAVLSKVFPTRS 49 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCCC
Confidence 3699999999999999999999 5689999999765444
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0012 Score=78.53 Aligned_cols=34 Identities=35% Similarity=0.682 Sum_probs=31.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
+||+|||||.|||+||..+++ .|.+|+|+||...
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae--~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAK--KGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHH--CCCeEEEEeCCCC
Confidence 699999999999999999999 6689999999753
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00061 Score=82.57 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=33.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG 48 (1129)
..||+|||||.|||.||..+++ .|.+|+|+||....||
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae--~G~~VilleK~~~~~g 53 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARR--AGRRVLVVTKAALDDG 53 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHH--cCCeEEEEEccCCCCC
Confidence 4799999999999999999999 5689999999876654
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0004 Score=85.15 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=32.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..||+|||||.|||+||..+++.++|.+|+|+||.+..
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 36999999999999999999984237899999997654
|
|
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00014 Score=89.13 Aligned_cols=43 Identities=26% Similarity=0.450 Sum_probs=39.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..++|+|||||+|||+||+.|++ .|++|+|||+++.+||.+..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~--~g~~v~v~E~~~~~GG~~~t 201 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLS--FGFKVVVLEGRNRPGGRVYT 201 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--cCCcEEEEecCccCcCceee
Confidence 45799999999999999999999 66999999999999998874
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00012 Score=88.47 Aligned_cols=39 Identities=41% Similarity=0.559 Sum_probs=36.7
Q ss_pred EEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 12 IGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 12 V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
|+|||||.+||+||..|++ .|++|+|+||++.+||.+..
T Consensus 1 vvVIGaG~~GL~aA~~La~--~G~~V~VlE~~~~~GG~~~t 39 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAA--AGIPVTVVEQRDKPGGRAGV 39 (502)
T ss_pred CEEECcCHHHHHHHHHHHh--CCCcEEEEECCCCCcCceEE
Confidence 6999999999999999999 67999999999999999874
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00039 Score=85.64 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=32.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
..||+|||||.|||+||..+++ .|.+|+|+||...+|
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae--~G~~VilieK~~~~~ 71 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGE--LGYNVKVFCYQDSPR 71 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHH--cCCcEEEEecCCCCC
Confidence 3699999999999999999999 668999999876654
|
|
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.002 Score=76.08 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=35.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
...||+|||||.+|.++|..|++..++.+|+|+||.+.+|
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 4579999999999999999999976689999999955665
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0015 Score=80.05 Aligned_cols=37 Identities=11% Similarity=0.216 Sum_probs=31.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG 48 (1129)
..||+|||||.|||+||..+++ . .+|+|+||....||
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~--~-~~VilleK~~~~~g 41 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGP--R-ARTAVLTKLYPTRS 41 (583)
T ss_pred eccEEEECccHHHHHHHHHHHh--C-CCEEEEeCCCCCCC
Confidence 4699999999999999999987 4 79999999765444
|
|
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0002 Score=85.29 Aligned_cols=43 Identities=33% Similarity=0.624 Sum_probs=38.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~~~GG~w~~ 52 (1129)
...+|+|||||++||+||++|++ .|. +|+|+|+++.+||.+..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~--~g~~~v~vlE~~~~~GG~~~~ 68 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSE--AGIEDILILEATDRIGGRMRK 68 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--cCCCcEEEecCCCCCCCccee
Confidence 35799999999999999999999 456 69999999999998875
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00054 Score=78.58 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=31.7
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
+|+|||||.+|+.||..|++ .|++|+|||+++.+|
T Consensus 2 ~VvVIGgGlAGleaA~~LAr--~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQ--AGVPVILYEMRPEKL 36 (433)
T ss_pred CEEEECCCHHHHHHHHHHHh--CCCcEEEEecccccc
Confidence 79999999999999999999 669999999877654
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00047 Score=83.82 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=32.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC-cCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN-VGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~-~GG~ 49 (1129)
..||+|||||.|||+||..+ + .|.+|+|+||... .||.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~--~G~~VilleK~~~~~gG~ 45 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-E--RGKNVVIVSKGLFGKSGC 45 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-h--cCCCEEEEEccCCCCCcc
Confidence 36999999999999999999 7 5689999999764 4553
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00017 Score=86.12 Aligned_cols=39 Identities=31% Similarity=0.583 Sum_probs=36.4
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
+|+|||||+|||+||..|.+ .|++|+|||+++.+||.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~--~G~~v~vlE~~~~~GG~~~ 39 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLAD--AGHTPIVLEARDVLGGKVA 39 (453)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCCCcc
Confidence 59999999999999999999 6699999999999999876
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >KOG1276|consensus | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00026 Score=77.89 Aligned_cols=44 Identities=36% Similarity=0.560 Sum_probs=40.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..++|||+|||.|||+||.+|++++++..|+|||+.+.+||-.+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwir 53 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIR 53 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceee
Confidence 45899999999999999999999888888999999999999666
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00082 Score=82.26 Aligned_cols=43 Identities=30% Similarity=0.421 Sum_probs=38.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
...||+|||+|.+|++||..+++ .|.+|+|+||++.+||.+.+
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~--~g~~v~~iek~~~~gg~~~~ 53 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAW--HGLKVIVVEKDPVFGGTTAW 53 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCccccc
Confidence 35799999999999999999999 66999999999888887664
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0016 Score=79.41 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=35.7
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceE
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTW 50 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w 50 (1129)
.||+|||||.|||.||..+++.+++.+|+|+||....||..
T Consensus 4 ~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 4 HDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 68999999999999999999866678999999987766543
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00015 Score=72.51 Aligned_cols=42 Identities=36% Similarity=0.566 Sum_probs=38.1
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc-ccc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG-TWL 781 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG-~w~ 781 (1129)
.-.+++|+|+||+||.||++|.+.| ++|++|||+-.+|| .|.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g--~kV~i~E~~ls~GGG~w~ 71 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAG--LKVAIFERKLSFGGGIWG 71 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCC--ceEEEEEeecccCCcccc
Confidence 3568899999999999999999999 99999999999875 777
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0016 Score=79.97 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=33.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG 48 (1129)
..||+|||||.|||+||..+++ .|.+|+|+||....||
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVE--LGYKTACISKLFPTRS 66 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHH--cCCcEEEEeccCCCCC
Confidence 4699999999999999999999 6689999999876554
|
|
| >KOG2404|consensus | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0013 Score=69.27 Aligned_cols=39 Identities=31% Similarity=0.591 Sum_probs=34.8
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.|+|||+|-|||+|+..+.. .+-.|+++|++..+||.-.
T Consensus 11 pvvVIGgGLAGLsasn~iin--~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIIN--KGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHh--cCCeEEEEeccCCcCCcce
Confidence 59999999999999999998 4456999999999999764
|
|
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00025 Score=85.39 Aligned_cols=42 Identities=31% Similarity=0.408 Sum_probs=38.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYT 53 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~ 53 (1129)
+||+|||||.+||+||..|++ .|++|+|+||++.+||.+...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~--~G~~V~vlE~~~~~GG~~~~~ 42 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAV--KGAKVLVLERYLIPGGSAGYF 42 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHH--CCCcEEEEECCCCCCCceeEe
Confidence 479999999999999999999 679999999999999998853
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0018 Score=79.61 Aligned_cols=38 Identities=29% Similarity=0.422 Sum_probs=33.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG 48 (1129)
..||+|||||.|||.||..+++ .|.+|+|+||....||
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae--~G~~VilveK~~~~~g 87 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSE--HGFNTACITKLFPTRS 87 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHh--cCCcEEEEEcCCCCCC
Confidence 3689999999999999999999 6689999999876553
|
|
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00048 Score=77.29 Aligned_cols=43 Identities=30% Similarity=0.584 Sum_probs=39.6
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
....+|+|||||.|||+||..|.+ .|++|+|+|.++.+||-+.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~k--aG~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKK--AGYQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhh--cCcEEEEEeccCCcCceeE
Confidence 345799999999999999999999 7799999999999999876
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00095 Score=81.74 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=30.5
Q ss_pred EEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 12 IGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 12 V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
|+|||||.|||+||..+++ .|.+|+|+||.+.+|
T Consensus 1 VlVVG~G~AGl~AAl~Aae--~G~~VilleK~~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAE--LGYHVKLFSYVDAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHH--cCCCEEEEEecCCCC
Confidence 7999999999999999999 668999999987453
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0004 Score=83.48 Aligned_cols=41 Identities=24% Similarity=0.537 Sum_probs=37.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.++|+|||||++||++|..|.+ .|++|+|||+++.+||.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~--~g~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLD--QGHEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHh--CCCeeEEEecCCCCCCcee
Confidence 4699999999999999999999 6699999999999999776
|
|
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0018 Score=73.07 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=36.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
..||++||||..|-+.+..|++..+..+|+||||.+.++
T Consensus 3 ~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A 41 (488)
T PF06039_consen 3 EYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVA 41 (488)
T ss_pred ceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcch
Confidence 579999999999999999999988999999999988876
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00039 Score=82.88 Aligned_cols=40 Identities=23% Similarity=0.532 Sum_probs=36.8
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
+|+|||||.+||+||..|.+ .|++|+|||+++.+||.+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~--~G~~v~v~E~~~~~GG~~~~ 40 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVD--AGHEVDIYESRSFIGGKVGS 40 (474)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCCCCceeee
Confidence 58999999999999999999 66999999999999998763
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00047 Score=85.07 Aligned_cols=43 Identities=28% Similarity=0.476 Sum_probs=39.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..++|+|||||+|||+||+.|.+ .|++|+|+|+++.+||....
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~--~g~~v~v~E~~~r~GGr~~t 279 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLS--MGFKVVVLEGRARPGGRVKT 279 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeccccCCCcccc
Confidence 35799999999999999999999 67999999999999998764
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00046 Score=69.89 Aligned_cols=41 Identities=32% Similarity=0.481 Sum_probs=33.7
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc-ccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG-TWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG-~w~ 781 (1129)
..+++|+|+||+||++|+.|.+.| ++|++||++..+|| .|.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g--~kV~v~E~~~~~GGg~~~ 58 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAG--LKVAVIERKLSPGGGMWG 58 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHT--S-EEEEESSSS-BTTTTS
T ss_pred cCCEEEECCChhHHHHHHHHHHCC--CeEEEEecCCCCCccccc
Confidence 458899999999999999999999 99999999999986 676
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.003 Score=74.70 Aligned_cols=36 Identities=33% Similarity=0.491 Sum_probs=30.7
Q ss_pred EEcCChHHHHHHHHhhcCCCCceEEEEcccCC--cCceEe
Q psy12350 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN--VGGTWV 51 (1129)
Q Consensus 14 IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~--~GG~w~ 51 (1129)
|||+|.||++||..+++ .|.+|+|+||.+. .||.-.
T Consensus 1 VVG~G~AGl~AA~~Aa~--~Ga~V~vlEK~~~~~~Gg~s~ 38 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARR--AGASVLLLEAAPRARRGGNAR 38 (432)
T ss_pred CCcccHHHHHHHHHHHh--CCCcEEEEeCCCCCcCCcCcc
Confidence 79999999999999999 5689999999874 566543
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00098 Score=84.88 Aligned_cols=43 Identities=35% Similarity=0.591 Sum_probs=39.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..++|+|||||++|+++|..|.+ .|++|+|||+++.+||.|..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~--~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQR--QGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHH--CCCcEEEEeeccCCCCceee
Confidence 35799999999999999999999 56899999999999999874
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00089 Score=81.50 Aligned_cols=42 Identities=29% Similarity=0.510 Sum_probs=38.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.+++|+|||||.+||+||.+|.+ .|++|+|+|+++.+||...
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~--~g~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLAD--AGHKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEecCCCCCCcce
Confidence 35799999999999999999999 6699999999999999765
|
|
| >KOG2820|consensus | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0045 Score=66.28 Aligned_cols=158 Identities=15% Similarity=0.092 Sum_probs=89.6
Q ss_pred CCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc---C---ceEecC--CCCC---C------------C---
Q psy12350 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV---G---GTWVYT--EQTG---R------------D--- 59 (1129)
Q Consensus 6 ~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~---G---G~w~~~--~~~~---~------------~--- 59 (1129)
+....+|+|||||.-|+++|..|++ .+.++.++|+.+-+ | |.-+-. .+.. + +
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK--~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~ 81 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAK--RGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEE 81 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHh--cCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhh
Confidence 3456899999999999999999999 55999999996532 1 100000 0000 0 0
Q ss_pred ---CCCCC----ccCccc----ccccccCCccc------------cccC-CCCCCCC------CCCCCCCHHHHHHHHHH
Q psy12350 60 ---QYGLP----VHSSMY----KSLKTNLPKEI------------MELS-GYHHKGH------PDKSYIAANDVLEYLND 109 (1129)
Q Consensus 60 ---~~~~~----~~~~~y----~~l~~~~~~~~------------~~~~-d~~~~~~------~~~~~~~~~~~~~yl~~ 109 (1129)
.++++ .....+ .....|+.+.. -.|| .+++|+. ....+....+-++-+++
T Consensus 82 ~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~ 161 (399)
T KOG2820|consen 82 SGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQD 161 (399)
T ss_pred hceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHH
Confidence 01111 011111 11122221111 1333 3444442 23346677788888999
Q ss_pred HHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecccCCCCCcc
Q psy12350 110 FADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVTLPSKA 177 (1129)
Q Consensus 110 ~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG~~~~p~~p 177 (1129)
++.+.|. .++.+++|..+... ..++-.+.+++.+. ..+.-+ ++|+|+|.+....+|
T Consensus 162 ~~~~~G~--i~~dg~~v~~~~~~--~e~~~~v~V~Tt~g---s~Y~ak-----kiI~t~GaWi~klL~ 217 (399)
T KOG2820|consen 162 KARELGV--IFRDGEKVKFIKFV--DEEGNHVSVQTTDG---SIYHAK-----KIIFTVGAWINKLLP 217 (399)
T ss_pred HHHHcCe--EEecCcceeeEeec--cCCCceeEEEeccC---Ceeecc-----eEEEEecHHHHhhcC
Confidence 9999887 78999999877642 22344455554322 223334 899999976655555
|
|
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.00089 Score=82.69 Aligned_cols=43 Identities=28% Similarity=0.493 Sum_probs=39.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..++|+|||||++||+||..|.+ .+++|+|+|+++.+||.+..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~--~G~~V~VlE~~~riGGRi~T 225 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMR--FGFKVTVLEGRKRPGGRVYT 225 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHH--CCCcEEEEEccCcCCCCcce
Confidence 35799999999999999999999 67999999999999998873
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0041 Score=61.98 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=32.3
Q ss_pred cccccCCchhhHHHHHHhhC---CCcceEEEcccCCc-Cccccc
Q psy12350 743 IVDRHGPGGLTATKRLTEAG---NGFTCTTFEQADNI-GGTWLY 782 (1129)
Q Consensus 743 ~iiG~G~~gl~~a~~l~~~g---~~~~v~v~E~~~~~-GG~w~~ 782 (1129)
+|||+|++|++++.+|.+.. ...+|+|||+++.- |+.|..
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~ 44 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRP 44 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCC
Confidence 58999999999999999983 45899999996542 347763
|
|
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0012 Score=77.12 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=40.4
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
.+.+||+|||+|.+|+.+|..|.+ .|.+|.++||++..||-|..
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~--~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSV--NGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhh--CCCEEEEecCCCCcCccccc
Confidence 345899999999999999999999 67999999999999999983
|
|
| >KOG0029|consensus | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.00067 Score=80.04 Aligned_cols=44 Identities=32% Similarity=0.424 Sum_probs=39.5
Q ss_pred eeeccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 736 FIKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 736 ~~~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
......|+|||||.+||+||++|.+.| ++|+|+|.++++||--+
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G--~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFG--FDVLVLEARDRVGGRIY 55 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcC--CceEEEeccCCcCceeE
Confidence 345678999999999999999999999 99999999999999443
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0014 Score=75.44 Aligned_cols=35 Identities=29% Similarity=0.616 Sum_probs=31.8
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG 48 (1129)
||+|||||.+|+++|..|++ .|++|+|+|++ .+|+
T Consensus 1 DvvIIGaGi~G~~~A~~La~--~G~~V~l~e~~-~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR--RGHSVTLLERG-DIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH--TTSEEEEEESS-STTS
T ss_pred CEEEECcCHHHHHHHHHHHH--CCCeEEEEeec-cccc
Confidence 79999999999999999999 67999999998 5554
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0018 Score=78.89 Aligned_cols=43 Identities=30% Similarity=0.505 Sum_probs=39.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
...+|+|||+|.+|++||..+++ .+.+|+|+||...+||.+..
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~--~g~~v~~iek~~~~gg~~~~ 49 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAY--GGAKVLVVEKASTCGGATAW 49 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCccccc
Confidence 45899999999999999999999 56899999999999998874
|
|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0091 Score=69.84 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=36.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
...||+|||||..|+-+|+.++. .|++|+|+|+++--.|+-.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~--RGl~v~LvE~~D~AsGTSs 52 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG--RGLKVALVEKGDLASGTSS 52 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh--CCCeEEEEecCcccCcccC
Confidence 56899999999999999999999 6699999999886666544
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0024 Score=72.15 Aligned_cols=29 Identities=28% Similarity=0.602 Sum_probs=25.5
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEe
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVG 899 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~ 899 (1129)
.|+|||||.+|+|.|..+|+.|.+|.++.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit 29 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLIT 29 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEe
Confidence 48999999999999999999999999993
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0016 Score=79.13 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=31.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+..+|+|||||++||++|..|++ .|++|+||||+.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r--~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKK--KGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEeccc
Confidence 45799999999999999999999 679999999964
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0018 Score=75.72 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=34.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG 48 (1129)
.||+|||||.+|+++|..|+++.++.+|+|+||.+.+|+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~ 41 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPAR 41 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccc
Confidence 699999999999999999999534799999999876643
|
|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0019 Score=79.18 Aligned_cols=42 Identities=36% Similarity=0.563 Sum_probs=37.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..||+|||||+|||+||..+++ .|.+|+|+||...+||.-.+
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~--~G~~v~llEk~~~~gG~~~~ 50 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARK--LGLDVVVLEKEPVFGGTTAF 50 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHH--cCCeEEEEecCCCCCCccce
Confidence 4799999999999999999999 56899999999988887653
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0019 Score=73.63 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=31.7
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
++|+|||||++|++||..|++ .|++|+|+|+++..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr--~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAK--RGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccCcc
Confidence 589999999999999999999 66999999987654
|
|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0017 Score=77.32 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=37.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
+||+|||+||+|+.+|+.|++ .+++|+++|+....||.|.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~--~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVD--AGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHH--CCCeEEEEeccCccCCCcc
Confidence 489999999999999999999 6699999999999998875
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0018 Score=78.57 Aligned_cols=41 Identities=29% Similarity=0.483 Sum_probs=37.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..||+|||+| +|++||..+++ .|.+|+|+||.+.+||++.+
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~--~G~~v~v~Ek~~~~GG~~~~ 56 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHE--LGLSVLIVEKSSYVGGSTAR 56 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHH--CCCcEEEEecCCCCcCcccC
Confidence 5799999999 89999999999 66999999999999999885
|
|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0021 Score=78.31 Aligned_cols=42 Identities=29% Similarity=0.546 Sum_probs=37.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC--CcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD--NVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~--~~GG~w~~ 52 (1129)
..||+|||+|.|||+||..+++ .|.+|+|+||.+ .+||...+
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~--~G~~VivlEK~~~~~~GG~s~~ 47 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELAD--AGKRVLLLDQENEANLGGQAFW 47 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCCCceec
Confidence 4799999999999999999999 668999999998 78886653
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0061 Score=70.14 Aligned_cols=101 Identities=20% Similarity=0.302 Sum_probs=63.3
Q ss_pred eEEEEcCCccHHHHHHHHHhc--CCEEEEEecCCCCc----------cchhh----hhccccE-----EEEec-------
Q psy12350 871 QAVVVGSGQSGLDITLDIATT--GKQAVVVGSGQSGL----------DITLD----IATRAST-----VFLSH------- 922 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~--~~~V~vv~~~~~~~----------~~~~~----~~~~~~~-----~~~~~------- 922 (1129)
.|+|||||.+|+.+|..|++. +.+|.++++.+... +.... +...... .+...
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 389999999999999999987 99999998865211 11100 0000000 00000
Q ss_pred -CC--------ccccccCCCCCeEEcCCeeEEeCCcEEecCCcEeeccEEEEccCccC
Q psy12350 923 -HS--------ERVTSLCLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYSN 971 (1129)
Q Consensus 923 -~~--------~~~~~~~~~~~V~~~~~i~~v~~~~V~~~dG~~~~~D~VI~aTG~~~ 971 (1129)
.+ ...+...+..+|.....|.++++++|++.||+++.+|.||.|.|.++
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCC
Confidence 00 01111111223555445888888889999999999999999999664
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0022 Score=77.20 Aligned_cols=41 Identities=29% Similarity=0.427 Sum_probs=34.5
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
...+||+|||||..|+++|..|++ .|++|+|+||++-.+|+
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~--rG~~V~LlEk~d~~~Gt 44 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAG--RGLKVLLCEKDDLAQGT 44 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCCCC
Confidence 345899999999999999999999 56999999998643333
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0022 Score=78.59 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=34.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceE
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTW 50 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w 50 (1129)
..||+|||||.|||+||..+++ .|.+|+|+||....||..
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~--~G~~V~lveK~~~~~g~s 51 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAE--AGLKTACITKVFPTRSHT 51 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCCCcch
Confidence 3699999999999999999999 568999999977655543
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.012 Score=66.98 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=34.0
Q ss_pred CccccccCCchhhHHHHHHhhCC-CcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGN-GFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~-~~~v~v~E~~~~~GG~w~~ 782 (1129)
.|+|||+|++|+.+|.+|.+.-. +..+.|||+.+++|+=-.|
T Consensus 3 ~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaY 45 (474)
T COG4529 3 KVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAY 45 (474)
T ss_pred eEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccC
Confidence 57899999999999999998653 2349999999999864333
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0024 Score=76.06 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=35.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
...||+|||||..|+++|..|++.+++.+|+|+||.+.+|
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a 43 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVA 43 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchh
Confidence 4579999999999999999999977789999999987654
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0023 Score=77.14 Aligned_cols=40 Identities=30% Similarity=0.540 Sum_probs=36.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..||+||||| |||+||..+++ .|.+|+|+||...+||.-.
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~--~G~~V~vlEk~~~~Gg~t~ 46 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAR--EGLSVALVEATDKFGGTTA 46 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHH--CCCcEEEEecCCCCCccee
Confidence 5799999999 99999999999 6699999999988888654
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0026 Score=76.84 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=31.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..++|+|||||++|+++|..|++ .|++|+|+||..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar--~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSK--QGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHh--cCCEEEEEcccc
Confidence 35799999999999999999999 679999999954
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0032 Score=76.91 Aligned_cols=42 Identities=26% Similarity=0.514 Sum_probs=37.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
...||+|||+|.|||+||..+++ .|.+|+|+||.+.+||...
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae--~G~~VivlEk~~~~gG~t~ 51 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAA--RGLDTLVVEKSAHFGGSTA 51 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHH--CCCcEEEEEcCCCCCchHH
Confidence 45799999999999999999999 6689999999988888544
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0029 Score=77.02 Aligned_cols=42 Identities=33% Similarity=0.573 Sum_probs=38.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..||+|||+|.||++||..+++ .|.+|+|+||.+.+||++.+
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~--~G~~v~liEk~~~~gG~~~~ 47 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAAD--SGLEPLIVEKQDKVGGSTAM 47 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCceece
Confidence 4799999999999999999999 56899999999888998763
|
|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.003 Score=76.88 Aligned_cols=42 Identities=24% Similarity=0.454 Sum_probs=38.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..||+|||+|++|++||..+++ .|.+|+|+||...+||....
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~--~G~~v~llEk~~~~gG~~~~ 48 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAH--RGLSTVVVEKAPHYGGSTAR 48 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCccccc
Confidence 5799999999999999999999 56999999999988987764
|
|
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0021 Score=73.98 Aligned_cols=41 Identities=34% Similarity=0.452 Sum_probs=38.3
Q ss_pred ccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 742 NIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 742 ~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
++|||+|.+||++|++|.+.+|+.+++|||+.+++||.-..
T Consensus 3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred EEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 58999999999999999999999999999999999997653
|
|
| >KOG2614|consensus | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0038 Score=69.25 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=32.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
.+|+|||||.+|+++|..|.+ .|++|+|+|++.++
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r--~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHR--KGIDVVVLESREDP 37 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHH--cCCeEEEEeecccc
Confidence 589999999999999999999 67999999997754
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0038 Score=72.61 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=31.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
..||+|||||..|+++|..|++ .|++|+|+||+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~--~g~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLAR--RGLRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHH--CCCeEEEEecccC
Confidence 3799999999999999999999 5699999999754
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.018 Score=66.12 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=29.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||||.||..||.++++ .|.++.++--+-
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaAR--mG~ktlLlT~~~ 37 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAAR--MGAKTLLLTLNL 37 (621)
T ss_pred CCceEEECCCccchHHHHhhhc--cCCeEEEEEcCC
Confidence 4899999999999999999999 668888886553
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0043 Score=72.46 Aligned_cols=37 Identities=32% Similarity=0.477 Sum_probs=32.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
.+++|+|||||.+|+++|..|++ .|.+|+++|+....
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~--~G~~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAE--RGADVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHH--cCCEEEEEecCccC
Confidence 35899999999999999999999 55799999996643
|
|
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0036 Score=74.51 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=33.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.||+|||||.+|+++|..|++..++.+|+|+||.+.+|
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a 38 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVA 38 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcch
Confidence 38999999999999999999965689999999977654
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0039 Score=76.18 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=36.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..||+|||||.|||+||..+++.+++.+|+|+||....||...
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~ 46 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTV 46 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChh
Confidence 3699999999999999999998666789999999877666443
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0039 Score=73.55 Aligned_cols=36 Identities=22% Similarity=0.425 Sum_probs=32.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
++|+|||||.+|+++|.+|++ .+.+|+|+||...+|
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~--~g~~V~vle~~~~~~ 36 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQ--AGHEVTVIDRQPGPA 36 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCCchh
Confidence 489999999999999999999 568999999976554
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.036 Score=62.29 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecccCCC
Q psy12350 100 ANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVTL 173 (1129)
Q Consensus 100 ~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG~~~~ 173 (1129)
-.++.+.++++.+.+|. .++|+|+|+.+..+ +.+ +... ....+....+| +||+|.|+.+.
T Consensus 172 l~~vvkni~~~l~~~G~--ei~f~t~VeDi~~~----~~~-~~~v--~~~~g~~i~~~-----~vvlA~Grsg~ 231 (486)
T COG2509 172 LPKVVKNIREYLESLGG--EIRFNTEVEDIEIE----DNE-VLGV--KLTKGEEIEAD-----YVVLAPGRSGR 231 (486)
T ss_pred hHHHHHHHHHHHHhcCc--EEEeeeEEEEEEec----CCc-eEEE--EccCCcEEecC-----EEEEccCcchH
Confidence 34677788888888886 89999999988763 223 2222 22233456678 99999996543
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0043 Score=72.22 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=30.6
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
+||+|||||.+|+++|.+|++ .|.+|+|+||.+.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~--~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAK--HGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCC
Confidence 489999999999999999999 5689999999654
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0052 Score=72.96 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=34.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
...||+|||||..|+++|..|++.++..+|+|+||.+.+|
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a 83 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFA 83 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchh
Confidence 3479999999999999999999965557999999987654
|
|
| >KOG2960|consensus | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0017 Score=64.18 Aligned_cols=42 Identities=21% Similarity=0.533 Sum_probs=37.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC-ceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG-GTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G-G~w~ 51 (1129)
-+|+|||||.|||+||....++.++.+|.|+|..-.+| |.|.
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL 119 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL 119 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc
Confidence 58999999999999999999888999999999976664 6776
|
|
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0046 Score=73.80 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=32.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..||+|||||..|+++|.+|++.++|.+|+|+|++.
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 369999999999999999999965589999999954
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0057 Score=70.77 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=30.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.||+|||||.+|+++|.+|++ .|.+|+|+|+..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~--~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAAR--RGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 379999999999999999999 568999999965
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0045 Score=64.27 Aligned_cols=46 Identities=30% Similarity=0.370 Sum_probs=40.8
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGC 788 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~ 788 (1129)
.++|||+|++|++||..|+..| .+|+||||..-+||-....+.+++
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG--~~vtV~eKg~GvGGRlAtRRl~~g 48 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAG--REVTVFEKGRGVGGRLATRRLDGG 48 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcC--cEEEEEEcCCCcccchheeccCCc
Confidence 4789999999999999999999 999999999999998776555554
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.018 Score=69.15 Aligned_cols=34 Identities=32% Similarity=0.446 Sum_probs=30.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|.+|+++|..|++ .|++|+++|+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~--~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLE--LGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCc
Confidence 4689999999999999999999 668999999744
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0061 Score=74.34 Aligned_cols=39 Identities=23% Similarity=0.435 Sum_probs=34.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
..||+|||||.|||+||..+++ .|.+|+|+||....||.
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae--~G~~V~lveK~~~~~g~ 43 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIAS--AGFKVAVISKVFPTRSH 43 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHH--CCCcEEEEEccCCCCCc
Confidence 3699999999999999999999 66899999998765553
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0042 Score=74.80 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=40.5
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEH 785 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~ 785 (1129)
...+++|||+|.+||++|..|.+.| ++|+|+|+++.+||.+.....
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g--~~v~v~E~~~~~GG~~~s~~~ 48 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRG--YPVTVLEADPVVGGISRTVTY 48 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCceeeeecc
Confidence 4457899999999999999999999 999999999999998764433
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0038 Score=74.61 Aligned_cols=43 Identities=28% Similarity=0.345 Sum_probs=37.7
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT 783 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~ 783 (1129)
.++|||+|.+||+||+.|.+.|..++|+|+|+++++||.....
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~ 44 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTV 44 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEE
Confidence 4689999999999999999987558999999999999976543
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0042 Score=74.32 Aligned_cols=46 Identities=30% Similarity=0.386 Sum_probs=40.2
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEH 785 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~ 785 (1129)
..-+++|||+|..||++|..|++.| ++|+|+||++.+||.......
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G--~~V~VlE~~~~~GG~a~t~e~ 47 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAG--LKVTVLEKNDRVGGRARTFEL 47 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCC--CEEEEEEecCCCCcceEEEec
Confidence 3457899999999999999999999 999999999999996654433
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.007 Score=74.04 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=34.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceE
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTW 50 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w 50 (1129)
..||+|||||.|||+||..+++ .|.+|+|+||....||..
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lleK~~~~~g~t 46 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQ--SGQSCALLSKVFPTRSHT 46 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCCCCcc
Confidence 3699999999999999999999 678999999987666543
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0074 Score=75.46 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=32.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.+|+|||||.+|+++|.+|++ .|.+|+|+||...+|
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~--~G~~V~VlE~~~~~~ 296 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR--RGWQVTLYEADEAPA 296 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH--CCCeEEEEecCCCcc
Confidence 599999999999999999999 568999999976553
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.0046 Score=73.44 Aligned_cols=40 Identities=35% Similarity=0.478 Sum_probs=36.7
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
.++|||+|.+||+||+.|.+.| ++|+|+|+++++||....
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g--~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDAS--FKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCceeee
Confidence 5789999999999999999999 999999999999996553
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.047 Score=64.24 Aligned_cols=103 Identities=21% Similarity=0.340 Sum_probs=61.8
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCc-c------c--h------hhhh-cccc-EEEEec--------CC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGL-D------I--T------LDIA-TRAS-TVFLSH--------HS 924 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~-~------~--~------~~~~-~~~~-~~~~~~--------~~ 924 (1129)
-.|+|||||.+|+-+|..|++.|.+|.++++.+... + . . ..+. .+.. .++... .+
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 369999999999999999999999999998754211 0 0 0 0000 0000 111111 00
Q ss_pred c--------ccccc-CCCCCeEEcCC-eeEEeCC----cEEecCCcEeeccEEEEccCccCc
Q psy12350 925 E--------RVTSL-CLPNNVVLKPD-VAELTPT----GVRFQDGSYEQVDIILCCTGYSNH 972 (1129)
Q Consensus 925 ~--------~~~~~-~~~~~V~~~~~-i~~v~~~----~V~~~dG~~~~~D~VI~aTG~~~~ 972 (1129)
. ..+.. ....+|++... |.+++.+ .|.++||+++++|.||.|+|....
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 0 00100 01225666533 6666532 278889999999999999998754
|
|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.0084 Score=73.43 Aligned_cols=42 Identities=33% Similarity=0.479 Sum_probs=38.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..+|+|||+|++|++||..+++ .|.+|+|+||.+.+||.+.+
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~--~g~~v~l~ek~~~~gg~~~~ 57 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAI--AGLKVLLVERTEYVGGTTAT 57 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCcccc
Confidence 4699999999999999999999 66999999999999998874
|
|
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.0056 Score=72.76 Aligned_cols=40 Identities=33% Similarity=0.439 Sum_probs=36.6
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
.++|||+|.+||++|..|.+.| ++|+|+|+++.+||.+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G--~~v~vlE~~~~~GG~~~s 40 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRG--HEVTVFEADDQLGGLAAS 40 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CcEEEEEeCCCCCCceee
Confidence 3689999999999999999999 999999999999997643
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.032 Score=65.06 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 868 AGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 868 ~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
...+|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 45789999999999999999999999999998865
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.008 Score=73.73 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=35.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCC-CceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGS-GFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~-~~~v~v~E~~~~~GG~w~ 51 (1129)
..||+|||||.|||+||..+++.|. +.+|+|+||....||...
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~ 48 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSV 48 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCce
Confidence 3689999999999999999999431 279999999887666433
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.0084 Score=79.21 Aligned_cols=41 Identities=24% Similarity=0.436 Sum_probs=37.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..||+|||+|.|||+||..+++ .|.+|+|+||.+.+||...
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae--~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAAS--CGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEEccCCCCCchh
Confidence 4799999999999999999999 6689999999998888654
|
|
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.0091 Score=66.80 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=28.7
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
+|++|||||+||..+|.+|++.+ +.+|+|+|+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~-~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAG-NKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTST-TS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCC-CCcEEEEEcccc
Confidence 58999999999999999999842 479999999764
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.028 Score=64.96 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=30.7
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
++|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 579999999999999999999999999998764
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.01 Score=71.98 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=33.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
..||+|||+|.|||+||..+++ . .+|+|+||....||.
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~--~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAE--H-RRVAVLSKGPLSEGS 45 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHH--C-CCEEEEeccCCCCCC
Confidence 4699999999999999999987 4 699999998876664
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.0098 Score=72.29 Aligned_cols=34 Identities=29% Similarity=0.550 Sum_probs=31.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.+||+|||||..|+++|..|++ .|++|+|+||++
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~--rG~~V~LlEk~d 39 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCAL--RGLRCILVERHD 39 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHH--cCCeEEEEECCC
Confidence 4799999999999999999999 569999999965
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.011 Score=72.16 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=33.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
..||+|||||.|||+||..+++ .+ +|+|+||....||.
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae--~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAE--YG-TVAIITKDEPHESN 66 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhh--CC-CEEEEECCCCCCCc
Confidence 3699999999999999999999 56 89999998877764
|
|
| >KOG0685|consensus | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.0067 Score=68.35 Aligned_cols=40 Identities=33% Similarity=0.434 Sum_probs=36.0
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
.++|||||.+||+||.+|.+.| ..+++|||..+++||--+
T Consensus 23 kIvIIGAG~AGLaAA~rLle~g-f~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 23 KIVIIGAGIAGLAAATRLLENG-FIDVLILEASDRIGGRIH 62 (498)
T ss_pred eEEEECCchHHHHHHHHHHHhC-CceEEEEEeccccCceEe
Confidence 4799999999999999999887 378999999999999655
|
|
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.01 Score=63.31 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=38.1
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE 784 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~ 784 (1129)
+.+|+|+|.+|+..|..|.+.| ..|.|+||++++||.+....
T Consensus 3 d~lIVGaGlsG~V~A~~a~~~g--k~VLIvekR~HIGGNaYde~ 44 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQLG--KRVLIVEKRNHIGGNAYDEA 44 (374)
T ss_pred cEEEECCchhHHHHHHHHHHcC--CEEEEEeccccCCCcccccc
Confidence 5689999999999999888889 99999999999999998543
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.0068 Score=65.47 Aligned_cols=41 Identities=32% Similarity=0.550 Sum_probs=36.7
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC-cccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG-GTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G-G~w~ 781 (1129)
..+++|||+|++|+++|+.|.+.| .+|+|+||+..+| |+|.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G--~~V~vlEk~~~~Ggg~~~ 62 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNG--LKVCVLERSLAFGGGSWG 62 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCccccC
Confidence 458899999999999999999999 9999999999886 4564
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.059 Score=62.57 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=31.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
.++|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4689999999999999999999999999998754
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.0069 Score=69.61 Aligned_cols=38 Identities=32% Similarity=0.557 Sum_probs=35.5
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w 780 (1129)
.|+|+|+|.+||++|+.|.+.| ++|+|+|+++.+||..
T Consensus 2 rVai~GaG~AgL~~a~~La~~g--~~vt~~ea~~~~GGk~ 39 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAG--YDVTLYEARDRLGGKV 39 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCC--CceEEEeccCccCcee
Confidence 3689999999999999999999 9999999999999943
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.013 Score=72.06 Aligned_cols=41 Identities=29% Similarity=0.407 Sum_probs=34.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceE
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTW 50 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w 50 (1129)
..+||+|||||..|.++|..|++ .|++|+|+||++-.+|+-
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~--rGl~V~LvE~~d~a~GtS 110 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAAT--RGLRVGLVEREDFSSGTS 110 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHh--CCCEEEEEeccccCCCcc
Confidence 34899999999999999999999 569999999976444543
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.0081 Score=65.12 Aligned_cols=38 Identities=34% Similarity=0.526 Sum_probs=35.2
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
..+++|||+|++|+++|+.|.+.| ++|+|+||+..+||
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G--~~V~liEk~~~~Gg 62 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAG--LKVAVFERKLSFGG 62 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCCC
Confidence 468999999999999999999999 99999999988876
|
|
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.0086 Score=68.29 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=36.5
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
+++|||+|++|+++|..|.+.| .+|+|+|+++.+||.+..
T Consensus 3 DvvIIGaG~aGlsaA~~La~~G--~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQLN--KRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred cEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCCCCCceee
Confidence 6789999999999999999888 999999999999996553
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.0088 Score=71.44 Aligned_cols=47 Identities=32% Similarity=0.455 Sum_probs=41.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCc-ceEEEcccCCcCcccccCCCCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGF-TCTTFEQADNIGGTWLYTEHIG 787 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~-~v~v~E~~~~~GG~w~~~~~~g 787 (1129)
..+++|||+|.+||++|++|.+.| . +|+|+|+++.+||.+....+.|
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g--~~~v~vlE~~~~~GG~~~~~~~~g 73 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAG--IEDILILEATDRIGGRMRKANFAG 73 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC--CCcEEEecCCCCCCCcceeecCCC
Confidence 346899999999999999999998 7 6999999999999888665554
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.014 Score=70.27 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=33.4
Q ss_pred CCCCCCCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 1 MVQDKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 1 m~~~~~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
||........||+|||||.|||+||..++. .+|+|+||...
T Consensus 1 ~~~~~~~~~~DVlVIG~G~AGl~AAl~Aa~----~~V~lleK~~~ 41 (513)
T PRK07512 1 MMEDLRILTGRPVIVGGGLAGLMAALKLAP----RPVVVLSPAPL 41 (513)
T ss_pred CCccccCCcCCEEEECchHHHHHHHHHhCc----CCEEEEECCCC
Confidence 555444445799999999999999999973 49999999775
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.013 Score=72.58 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=33.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG 48 (1129)
..||+|||||.|||.||..+++ .|.+|+|+||....+|
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae--~G~~VivleK~~~~~s 42 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQ--RGLDTIVLSLVPAKRS 42 (657)
T ss_pred eccEEEECccHHHHHHHHHHHH--cCCCEEEEeCCCCCCc
Confidence 3699999999999999999999 6799999999775544
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.016 Score=70.26 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=33.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceE
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTW 50 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w 50 (1129)
...||+|||||.|||+||..+++ |.+|+|+||.+..||.-
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~~---G~~V~lieK~~~~gg~s 47 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLPS---HLRVGLITKDTLKTSAS 47 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhhc---CCCEEEEEccCCCCCch
Confidence 34799999999999999999853 58999999988766643
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.016 Score=68.10 Aligned_cols=36 Identities=28% Similarity=0.520 Sum_probs=30.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~ 44 (1129)
...||+|||||..|+++|.+|++.. |. +|+|+||+.
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~-g~~~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEH-GITNVAVLEKGW 65 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhc-CCCeEEEEEccc
Confidence 3579999999999999999999831 54 899999964
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >KOG1298|consensus | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.097 Score=57.30 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=30.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT 43 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~ 43 (1129)
..||+|||||.+|-+.|..|.+ .|-+|.|+||+
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~k--dGRrVhVIERD 77 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAK--DGRRVHVIERD 77 (509)
T ss_pred cccEEEECCcchHHHHHHHHhh--CCcEEEEEecc
Confidence 4789999999999999999999 56899999995
|
|
| >KOG3851|consensus | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.015 Score=61.66 Aligned_cols=104 Identities=17% Similarity=0.249 Sum_probs=60.9
Q ss_pred eEEEEcCCccHHHHHHHHHhc-C-CEEEEEecCCCCc--cchhhhhccccEEEEecCCccccccCCCCCeEE-cCCeeEE
Q psy12350 871 QAVVVGSGQSGLDITLDIATT-G-KQAVVVGSGQSGL--DITLDIATRASTVFLSHHSERVTSLCLPNNVVL-KPDVAEL 945 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~-~-~~V~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-~~~i~~v 945 (1129)
+|+|||||.-|+-+|..+.+. + .+|-+++....-. +...-.-..++++-.+++ ...+.++.+..- +..++++
T Consensus 41 kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr---~~a~liP~~a~wi~ekv~~f 117 (446)
T KOG3851|consen 41 KVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRR---KQASLIPKGATWIKEKVKEF 117 (446)
T ss_pred EEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccC---cccccccCCcHHHHHHHHhc
Confidence 699999999999999999875 3 4566665421100 000000000111111111 111122323222 2237777
Q ss_pred eC--CcEEecCCcEeeccEEEEccCccCcCCCCC
Q psy12350 946 TP--TGVRFQDGSYEQVDIILCCTGYSNHYPFLH 977 (1129)
Q Consensus 946 ~~--~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~ 977 (1129)
++ +.|++.+|++|..|.+|+|+|.+.++.-+.
T Consensus 118 ~P~~N~v~t~gg~eIsYdylviA~Giql~y~~Ik 151 (446)
T KOG3851|consen 118 NPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIK 151 (446)
T ss_pred CCCcCeEEccCCcEEeeeeEeeeeeceeccchhc
Confidence 65 559999999999999999999999876443
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.0089 Score=72.40 Aligned_cols=40 Identities=38% Similarity=0.432 Sum_probs=36.6
Q ss_pred ccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC
Q psy12350 742 NIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT 783 (1129)
Q Consensus 742 ~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~ 783 (1129)
++|||+|.+||+||..|.+.| .+|+|+|+++.+||.....
T Consensus 1 vvVIGaG~~GL~aA~~La~~G--~~V~VlE~~~~~GG~~~t~ 40 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAG--IPVTVVEQRDKPGGRAGVL 40 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCC--CcEEEEECCCCCcCceEEE
Confidence 579999999999999999999 9999999999999976543
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.0094 Score=72.11 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=36.7
Q ss_pred CccccccCCchhhHHHHHHhh-CCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEA-GNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~-g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
+++|||||.+||++|+.|.+. | ++|+|+|+++.+||....
T Consensus 14 ~v~IIGaGisGL~aA~~L~~~~g--~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 14 DVAVVGAGVSGLAAAYALASKHG--VNVLVTEARDRVGGNITS 54 (496)
T ss_pred CEEEECcCHHHHHHHHHHHHhcC--CCEEEEecCCCCCCceeE
Confidence 689999999999999999999 8 999999999999996553
|
|
| >TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.029 Score=63.78 Aligned_cols=127 Identities=11% Similarity=0.021 Sum_probs=72.6
Q ss_pred CceEEEEcccCCcC--------ceEecCCCCCCCCC--CC-CccCcccccccccCCcccccc-CC--CCCCC-CCCCCCC
Q psy12350 34 GFTCTTFEQTDNVG--------GTWVYTEQTGRDQY--GL-PVHSSMYKSLKTNLPKEIMEL-SG--YHHKG-HPDKSYI 98 (1129)
Q Consensus 34 ~~~v~v~E~~~~~G--------G~w~~~~~~~~~~~--~~-~~~~~~y~~l~~~~~~~~~~~-~d--~~~~~-~~~~~~~ 98 (1129)
|.+|+|+||++.+| |-|++++......+ .. .....+++.+....+.++++| .+ .++.. ...+-||
T Consensus 1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~~grvfP 80 (376)
T TIGR03862 1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGLGIETFVGSSGRVFP 80 (376)
T ss_pred CCeEEEEeCCCCccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHCCCceEECCCCEECC
Confidence 36899999999886 77777663210000 00 001123333333333333322 11 11111 1233566
Q ss_pred ---CHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecccCCCCC
Q psy12350 99 ---AANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVTLPS 175 (1129)
Q Consensus 99 ---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG~~~~p~ 175 (1129)
..+.+++-|...+++.|+ .|+++++|+.|++ +.+.+... .......+| +||||||..+-|+
T Consensus 81 ~S~~A~sVv~~L~~~l~~~gV--~i~~~~~V~~i~~-----~~~~v~~~----~~~~~~~a~-----~vIlAtGG~s~p~ 144 (376)
T TIGR03862 81 VEMKAAPLLRAWLKRLAEQGV--QFHTRHRWIGWQG-----GTLRFETP----DGQSTIEAD-----AVVLALGGASWSQ 144 (376)
T ss_pred CCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEeC-----CcEEEEEC----CCceEEecC-----EEEEcCCCccccc
Confidence 678999999999999887 8999999999832 23444331 111235677 9999999666554
Q ss_pred c
Q psy12350 176 K 176 (1129)
Q Consensus 176 ~ 176 (1129)
.
T Consensus 145 ~ 145 (376)
T TIGR03862 145 L 145 (376)
T ss_pred c
Confidence 4
|
This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown. |
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.009 Score=71.61 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=36.6
Q ss_pred CccccccCCchhhHHHHHHhh----CCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEA----GNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~----g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
+++|||+|.+||++|+.|.+. | ++|+|+|+++++||....
T Consensus 4 ~v~VIGaGiaGL~aA~~L~~~~~~~g--~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 4 HVVIIGGGISGLCAAYYLEKEIPELP--VELTLVEASDRVGGKIQT 47 (462)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCC--CcEEEEEcCCcCcceEEE
Confidence 678999999999999999998 6 999999999999996653
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.017 Score=70.50 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=29.5
Q ss_pred eEEEEcCChHHHHHHHHhh----cCCCCceEEEEcccCC
Q psy12350 11 HIGVIGGGAGGLTATKRLT----EPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~----~~~~~~~v~v~E~~~~ 45 (1129)
||+|||||.|||.||..++ + .|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e--~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDK--KGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhh--CCCeEEEEEccCC
Confidence 6999999999999999998 5 5689999999664
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.043 Score=64.09 Aligned_cols=33 Identities=12% Similarity=0.324 Sum_probs=30.4
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
++|+|||||.+|+=+|..|++.|.+|+++++.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 379999999999999999999999999998754
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.018 Score=69.37 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=33.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceE
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTW 50 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w 50 (1129)
..||+|||+|.|||+||..+++ +.+|+|+||.+..||..
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~---g~~V~lveK~~~~~g~s 41 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH---EYNVIIITKKTKRNSNS 41 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc---CCCEEEEeccCCCCCCc
Confidence 3699999999999999999975 47999999988766643
|
|
| >COG3573 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.023 Score=60.42 Aligned_cols=40 Identities=33% Similarity=0.547 Sum_probs=34.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC--CcCceE
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD--NVGGTW 50 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~--~~GG~w 50 (1129)
..+|+|||||-|||.||..|++ .|.+|+|+|++. .+||+-
T Consensus 5 ~~dvivvgaglaglvaa~elA~--aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELAD--AGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred cccEEEECccHHHHHHHHHHHh--cCceEEEEccccccccccee
Confidence 4799999999999999999999 679999999864 577753
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.012 Score=68.72 Aligned_cols=39 Identities=26% Similarity=0.470 Sum_probs=35.4
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
+.-+++|||+||+|.+||+.|++.| ++|+++||.+.+|.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G--~~VlvlEk~~~~G~ 40 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAG--LDVLVLEKGSEPGA 40 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcC--CeEEEEecCCCCCC
Confidence 3458899999999999999999999 99999999987764
|
|
| >KOG4254|consensus | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.016 Score=64.50 Aligned_cols=45 Identities=36% Similarity=0.546 Sum_probs=40.1
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYT 53 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~ 53 (1129)
++.+|++|||+|..||.||.+|++ .+.+|+++||+..+||--.+.
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r--~g~~V~vlerrhv~gGaavte 56 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLAR--YGQSVAVLERRHVIGGAAVTE 56 (561)
T ss_pred CcccceEEecCCccchhHHHHHHh--cCcceEEEEEeeecCcceeee
Confidence 456899999999999999999999 779999999998888877654
|
|
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.021 Score=68.64 Aligned_cols=38 Identities=26% Similarity=0.466 Sum_probs=33.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.+.||+|||||.|||.||..+++ .+.+|+|+||....+
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~--~g~~V~l~~K~~~~r 42 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAE--AGLKVALLSKAPPKR 42 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHh--cCCcEEEEEccccCC
Confidence 45799999999999999999999 559999999976543
|
|
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.022 Score=69.75 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=31.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.+|+||||||+||+.+|.+|++. ++++|+|+|+..
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~-~g~~VlvlEaG~ 39 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSED-PDVSVLLLEAGG 39 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhC-CCCeEEEecCCC
Confidence 48999999999999999999983 579999999975
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.011 Score=68.32 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=27.6
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
+++|||+|++||.||..+.+.| .+|+|+||++.+|
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g--~~V~vlE~~~~~g 36 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKG--ARVLVLERNKRVG 36 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT----EEEE-SSSSS-
T ss_pred cEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCcccc
Confidence 5789999999999999999999 9999999999886
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.022 Score=67.42 Aligned_cols=34 Identities=29% Similarity=0.602 Sum_probs=27.6
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCC-ceEEEEcccC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSG-FTCTTFEQTD 44 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~-~~v~v~E~~~ 44 (1129)
||+|||||+||..+|..|++.+++ ++|+|+|+.+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 799999999999999999996655 8999999955
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.016 Score=70.01 Aligned_cols=40 Identities=33% Similarity=0.361 Sum_probs=36.8
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
+++|||+|.+||++|..|.+.| ++|+|+|+++.+||....
T Consensus 3 dvvIIGaG~~GL~aa~~La~~G--~~v~vlE~~~~~GG~~~t 42 (492)
T TIGR02733 3 SVVVIGAGIAGLTAAALLAKRG--YRVTLLEQHAQPGGCAGT 42 (492)
T ss_pred eEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCccce
Confidence 5789999999999999999999 999999999999996543
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >KOG1276|consensus | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.018 Score=63.90 Aligned_cols=42 Identities=31% Similarity=0.320 Sum_probs=37.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
-.++|+|+|.+||++|++|.+.+++..+++||+.+++||-..
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwir 53 (491)
T KOG1276|consen 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIR 53 (491)
T ss_pred ceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceee
Confidence 357899999999999999999998888999999999999444
|
|
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.016 Score=69.39 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=35.5
Q ss_pred CccccccCCchhhHHHHHHhhC----CCcceEEEcccCCcCcccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAG----NGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g----~~~~v~v~E~~~~~GG~w~ 781 (1129)
.++|||||.+||++|+.|.+.+ ...+|+|+|+++++||...
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 4789999999999999999863 2378999999999999654
|
|
| >KOG2665|consensus | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.022 Score=60.31 Aligned_cols=40 Identities=20% Similarity=0.434 Sum_probs=36.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.++|++|||||.-|++.|+.|.-+.++.+|.|+|++..++
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 4689999999999999999998888899999999988764
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.015 Score=68.49 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=33.4
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
+++|+|+|++|++||..+.+.| .+|+|+|+.+.+||....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G--~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAG--AKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT--S-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCC--CEEEEEECCccCCCcceE
Confidence 5789999999999999999999 999999999999998763
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.017 Score=69.06 Aligned_cols=38 Identities=32% Similarity=0.457 Sum_probs=35.4
Q ss_pred ccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 742 NIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 742 ~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
++|||+|++||++|..|.+.| ++|+|+|+++.+||.+.
T Consensus 2 v~IiGaG~aGl~aA~~L~~~G--~~v~vlE~~~~~GG~~~ 39 (453)
T TIGR02731 2 VAIAGAGLAGLSCAKYLADAG--HTPIVLEARDVLGGKVA 39 (453)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCCcc
Confidence 689999999999999999999 99999999999999553
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.016 Score=69.67 Aligned_cols=91 Identities=23% Similarity=0.387 Sum_probs=57.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCCeeEEe
Q psy12350 867 FAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELT 946 (1129)
Q Consensus 867 ~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~i~~v~ 946 (1129)
+.+|+|+|||+|.+|+++|..|++.|.+|+++++.+.. ... .....+. ..+|++..+
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~---------~~~------~~~~~l~---~~gv~~~~~----- 70 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDE---------RHR------ALAAILE---ALGATVRLG----- 70 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh---------hhH------HHHHHHH---HcCCEEEEC-----
Confidence 46899999999999999999999999999999763210 000 0000000 013333221
Q ss_pred CCcEEecCCcEeeccEEEEccCccCcCCCCCC--CCCeeec
Q psy12350 947 PTGVRFQDGSYEQVDIILCCTGYSNHYPFLHE--SCGIKVV 985 (1129)
Q Consensus 947 ~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~--~~g~~~~ 985 (1129)
..+. ....+|.||.++|..++.|++.. +.|+++.
T Consensus 71 -~~~~----~~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi~v~ 106 (480)
T PRK01438 71 -PGPT----LPEDTDLVVTSPGWRPDAPLLAAAADAGIPVW 106 (480)
T ss_pred -CCcc----ccCCCCEEEECCCcCCCCHHHHHHHHCCCeec
Confidence 1111 12468999999999999886542 3456553
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.077 Score=61.36 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=32.6
Q ss_pred CCCcEEecCCceEEeCCc----EEEcCCcEEeccEEEEccCCCCC
Q psy12350 652 LPNNVVLKPDVAELTPTG----VRFQDGSYEQVDIILCCTGYTNH 692 (1129)
Q Consensus 652 ~~~~~~v~~~I~~it~~g----V~~~dG~~~~~D~VVlATGy~~~ 692 (1129)
..+++.+...+.+++.++ |++.||+++.++.||=|+|....
T Consensus 99 ~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 99 AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 456677777888887665 47889999999999999996544
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >KOG2311|consensus | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.056 Score=60.56 Aligned_cols=30 Identities=23% Similarity=0.505 Sum_probs=27.7
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEec
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGS 900 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~ 900 (1129)
.|+|||||-.|||.|.+.++.|++.+++..
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~ 59 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLGARTLLLTH 59 (679)
T ss_pred cEEEECCCccchHHHHHHHhcCCceEEeec
Confidence 599999999999999999999999988744
|
|
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.039 Score=59.10 Aligned_cols=33 Identities=30% Similarity=0.660 Sum_probs=29.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT 43 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~ 43 (1129)
+++|+|||||-|||+||.+|.+ .|.+++|+-+.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~--~Gk~c~iv~~g 34 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQ--AGKRCAIVNRG 34 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHh--cCCcEEEEeCC
Confidence 3799999999999999999999 66899998774
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.04 Score=63.31 Aligned_cols=31 Identities=23% Similarity=0.542 Sum_probs=28.1
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEec
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGS 900 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~ 900 (1129)
-.|+|||||-.|+|.|...|+.|.++.++..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~ 35 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTL 35 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEc
Confidence 3699999999999999999999999988754
|
|
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.024 Score=61.11 Aligned_cols=41 Identities=27% Similarity=0.236 Sum_probs=34.9
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
..-.++|||+|.+||+||..|.+. ++|++||.++.+||--+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r---hdVTLfEA~~rlGGha~ 47 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR---HDVTLFEADRRLGGHAN 47 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc---cceEEEeccccccCccc
Confidence 345679999999999999998765 69999999999999433
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.026 Score=63.00 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=32.9
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
+++|||+|++|+++|..|.+.| .+|+|+||....+.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g--~~v~vie~~~~~~~ 37 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKG--LRVLLLEKKSFPRY 37 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCc
Confidence 6799999999999999999999 99999999886654
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.025 Score=68.19 Aligned_cols=41 Identities=29% Similarity=0.315 Sum_probs=37.5
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT 783 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~ 783 (1129)
+++|||+|.+||++|..|.+.| .+|+|+||++.+||....-
T Consensus 2 dvvViGaG~~Gl~aA~~La~~G--~~V~vlE~~~~~GG~~~~~ 42 (493)
T TIGR02730 2 DAIVIGSGIGGLVTATQLAVKG--AKVLVLERYLIPGGSAGYF 42 (493)
T ss_pred cEEEECCcHHHHHHHHHHHHCC--CcEEEEECCCCCCCceeEe
Confidence 5789999999999999999999 9999999999999976643
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.027 Score=67.89 Aligned_cols=45 Identities=29% Similarity=0.346 Sum_probs=38.3
Q ss_pred ccCccccccCCchhhHHHHHHhhC---CCcceEEEcccCCcCcccccC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAG---NGFTCTTFEQADNIGGTWLYT 783 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g---~~~~v~v~E~~~~~GG~w~~~ 783 (1129)
..+++|||+|.+||++|+.|.+.| ..++|+|||+++.+||.+...
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~ 52 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTS 52 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEE
Confidence 346899999999999999999876 137899999999999987644
|
|
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.027 Score=69.60 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=38.7
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
...+++|||+|++|+++|+.|.+.| ++|+|+|+++.+||....
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g--~~v~v~E~~~~~GG~~~t 201 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFG--FKVVVLEGRNRPGGRVYT 201 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcC--CcEEEEecCccCcCceee
Confidence 3457899999999999999999999 999999999999997653
|
|
| >KOG2415|consensus | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.034 Score=61.16 Aligned_cols=43 Identities=26% Similarity=0.452 Sum_probs=36.1
Q ss_pred eccCccccccCCchhhHHHHHHhh----CCCcceEEEcccCCcCccc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEA----GNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~----g~~~~v~v~E~~~~~GG~w 780 (1129)
..-+++|+|+||+||++|++|++. +.+++|+|+||...+||.-
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght 121 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT 121 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce
Confidence 345789999999999999998864 3468899999999999853
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.03 Score=66.39 Aligned_cols=42 Identities=26% Similarity=0.246 Sum_probs=36.5
Q ss_pred cCccccccCCchhhHHHHHHhhC--CCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAG--NGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g--~~~~v~v~E~~~~~GG~w~ 781 (1129)
-.++|||+|.+||+||..|.+.| +..+|+|+|+++.+||...
T Consensus 23 ~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 23 KKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 35689999999999999999974 2389999999999999765
|
|
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.031 Score=63.14 Aligned_cols=42 Identities=33% Similarity=0.531 Sum_probs=38.3
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
...+++|+|+|.+||++|..|++.| ++|+|+|.++++||-..
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG--~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAG--YQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcC--cEEEEEeccCCcCceeE
Confidence 4567899999999999999999999 99999999999999554
|
|
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.033 Score=66.51 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=35.1
Q ss_pred ccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 742 NIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 742 ~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
++|||+|.+|+++|..|.+.| ++|+|||+++.+||...
T Consensus 2 v~IiG~G~aGl~aA~~L~~~G--~~v~v~E~~~~~GG~~~ 39 (474)
T TIGR02732 2 VAIVGAGLAGLSTAVELVDAG--HEVDIYESRSFIGGKVG 39 (474)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CcEEEEEecCCCCceee
Confidence 579999999999999999999 99999999999999543
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >KOG2960|consensus | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.022 Score=56.61 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=38.2
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC-cccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG-GTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G-G~w~ 781 (1129)
-.+++|+|+|++||++|+.+.+..|+.+|.++|.+-..| |.|.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL 119 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL 119 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc
Confidence 457899999999999999999999999999999987775 4787
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.031 Score=64.24 Aligned_cols=34 Identities=29% Similarity=0.415 Sum_probs=29.4
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
+|+|||+|++|+++|..|.+.| ++|+||||++..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G--~~v~i~E~~~~~ 36 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAG--IDVTIIERRPDP 36 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT--CEEEEEESSSSC
T ss_pred eEEEECCCHHHHHHHHHHHhcc--cccccchhcccc
Confidence 5789999999999999999999 999999998753
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.037 Score=65.18 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=33.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.+++|||+|++|+++|+.|.+.| ++|+|+||.+..|
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G--~~VlliEr~~~~g 41 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAG--LDVLVIERGDSAG 41 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCCC
Confidence 57899999999999999999999 9999999987654
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.054 Score=69.95 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=31.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
..||+|||||.|||.||..+++ .|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~--~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAE--HGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHH--CCCeEEEEecccc
Confidence 4699999999999999999999 6689999999763
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.082 Score=61.30 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=26.7
Q ss_pred CCCCCCcccchhhhcccccEEEEccccC
Q psy12350 265 AANGPSGLDITHDISTEATTVFLSHHSE 292 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~~~V~lv~r~~ 292 (1129)
||||++|+=+|..|++.|.+|+|++|.+
T Consensus 6 vGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 6 IGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred ECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 8999999999999999999999999876
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.051 Score=64.24 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=39.8
Q ss_pred CCCceEEEeecccccceeeccCccccccCCchhhHHHHHHhhCCCcceEEEcccC
Q psy12350 720 EHPTMFILGVSFTIEEFIKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD 774 (1129)
Q Consensus 720 ~~p~l~~vG~~~~pn~~~~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~ 774 (1129)
..|+.-.+..+..+...-+..+|+|||+||+|+++|..|.+.| ++|+|+||+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G--~~VlllEr~~ 72 (450)
T PLN00093 20 SRPGLRVLAAAASKKLSGRKLRVAVIGGGPAGACAAETLAKGG--IETFLIERKL 72 (450)
T ss_pred ccccceeeecCCCCCcCCCCCeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCC
Confidence 3455544444433333334568999999999999999999999 9999999975
|
|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.063 Score=61.62 Aligned_cols=33 Identities=33% Similarity=0.685 Sum_probs=29.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+||+|||||++|+++|..+.+ .+.+|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~--~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAE--AGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence 479999999999999999999 568999999864
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.04 Score=65.01 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=33.7
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+||.+.+|.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G--~~V~llEr~~~~g~ 42 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREG--AQVLVIERGNSAGA 42 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCC--CeEEEEEcCCCCCC
Confidence 58899999999999999999999 99999999876653
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.04 Score=64.31 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=34.2
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w 780 (1129)
+++|||+|++|+++|..|.+.| .+|+|+|+++.+|+.+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g--~~v~liE~~~~~~~~~ 38 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPG--LRVQLIEPHPPIPGNH 38 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCCCCCCc
Confidence 5789999999999999999989 9999999998888643
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.038 Score=61.63 Aligned_cols=41 Identities=24% Similarity=0.464 Sum_probs=35.5
Q ss_pred ccCccccccCCchhhHHHHHHhh-CCCcceEEEcccCCcCc-ccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEA-GNGFTCTTFEQADNIGG-TWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~-g~~~~v~v~E~~~~~GG-~w~ 781 (1129)
..+++|||+|++|+.+|..|.+. | .+|+++||+..+|| .|.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g--~kV~viEk~~~~GGG~~~ 134 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPN--VKVAIIEQSVSPGGGAWL 134 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCC--CeEEEEecCcccccceee
Confidence 45789999999999999999975 6 89999999988876 564
|
|
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.058 Score=65.67 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=29.3
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
|++|||||+||..+|.+|.+.+ .++|+|+|+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~-~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDV-SNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCC-CCeEEEEecCC
Confidence 6899999999999999999942 37999999975
|
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. |
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.037 Score=64.70 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=32.9
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADN 775 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~ 775 (1129)
+..+++|||+|++|+++|..|.+.| ++|+|+||.+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G--~~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSG--LKVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCCc
Confidence 4568899999999999999999999 99999999874
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.067 Score=48.89 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=31.4
Q ss_pred CCCCCeEEEEccCcchhhhHHHhhcccCeEEEEEEe
Q psy12350 528 PFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLRF 563 (1129)
Q Consensus 528 ~~~~k~v~ViG~g~sa~~~~~~l~~~~~~v~~~~r~ 563 (1129)
+++||+|+|||+|..|..-+..|.+.+++|+++...
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 578999999999999999999999999999999885
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.074 Score=48.61 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=30.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEec
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGS 900 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~ 900 (1129)
+++||+|+|||||..|..-+..|.+.|++|+++..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~ 38 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISP 38 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEES
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECC
Confidence 46799999999999999999999999999999975
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.042 Score=64.01 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=31.5
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
+++|||+|++|+++|..|.+.| ++|+|+||.+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G--~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSG--LKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCC--CEEEEEeCCCcc
Confidence 5789999999999999999999 999999998754
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [] | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.092 Score=60.42 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=39.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCC--CCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPG--SGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~--~~~~v~v~E~~~~~GG~w~~ 52 (1129)
.++.=|||+|.|+|+||.+|.+.+ +|-+|+|+|+.+..||.+.-
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg 47 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDG 47 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccC
Confidence 467889999999999999999876 67899999999999998873
|
|
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.051 Score=67.60 Aligned_cols=44 Identities=25% Similarity=0.337 Sum_probs=39.0
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT 783 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~ 783 (1129)
....++|||+|.+|+++|++|.+.| ++|+|+|+++.+||.....
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g--~~v~v~E~~~r~GGr~~t~ 280 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMG--FKVVVLEGRARPGGRVKTM 280 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeccccCCCccccc
Confidence 3457899999999999999999999 9999999999999975543
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.17 Score=58.86 Aligned_cols=32 Identities=22% Similarity=0.556 Sum_probs=29.5
Q ss_pred eEEEEcCCccHHHHHHHHHhcC-CEEEEEecCC
Q psy12350 871 QAVVVGSGQSGLDITLDIATTG-KQAVVVGSGQ 902 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~-~~V~vv~~~~ 902 (1129)
.|+|||||.+|+-+|..|++.| .+|+++++.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 3899999999999999999999 9999998754
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.055 Score=63.17 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=31.7
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
+++|||+||+|+++|+.|.+.| ++|+|+||+...+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G--~~V~llE~~~~~~ 36 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAG--IQTFLLERKPDNA 36 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCC--CcEEEEecCCCCC
Confidence 5789999999999999999999 9999999976544
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.053 Score=63.47 Aligned_cols=37 Identities=38% Similarity=0.579 Sum_probs=33.2
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
..+++|||+|++|+++|..|.+.| ++|+||||.+.++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g--~~v~v~Er~~~~~ 40 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQG--IKVKLLEQAAEIG 40 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCC--CcEEEEeeCcccc
Confidence 357899999999999999999999 9999999987653
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.15 Score=61.19 Aligned_cols=31 Identities=23% Similarity=0.533 Sum_probs=29.0
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
.|+|||+|.+|+++|..+++.|.+|.++++.
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~ 32 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLN 32 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecc
Confidence 4899999999999999999999999999865
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.049 Score=63.55 Aligned_cols=38 Identities=26% Similarity=0.410 Sum_probs=34.7
Q ss_pred cccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 743 IVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 743 ~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
+|||+|++|+++|..+.+.| .+|+|+||++.+|+.+..
T Consensus 1 vIIGgG~aGl~aAi~aa~~G--~~V~llEk~~~~G~k~~~ 38 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREG--LSVLLLEKNKKIGKKLLI 38 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcC--CcEEEEecCccccccccc
Confidence 58999999999999999999 999999999999987653
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >KOG2853|consensus | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.085 Score=56.61 Aligned_cols=37 Identities=27% Similarity=0.497 Sum_probs=31.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcC--CCCceEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEP--GSGFTCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~--~~~~~v~v~E~~~~ 45 (1129)
.-+|+|||||-.|.+.|..|+++ ..|++|+|+||++.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 46899999999999999998763 24689999999763
|
|
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.059 Score=65.10 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=36.1
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
.++|||+|++|+++|..|.+.| ++|+|||+++.+||.+.
T Consensus 77 ~v~iiG~G~~Gl~~a~~L~~~g--~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 77 KVAIIGAGLAGMSTAVELLDQG--HEVDIYESRPFIGGKVG 115 (569)
T ss_pred eEEEECCCHHHHHHHHHHHhCC--CeeEEEecCCCCCCcee
Confidence 5789999999999999999999 99999999999999654
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.064 Score=64.87 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=32.9
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
..+|+|||+|++|+++|..|.+.| ++|+|+||.+..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~G--i~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRG--VSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCC
Confidence 457899999999999999999999 999999998754
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.069 Score=62.57 Aligned_cols=35 Identities=26% Similarity=0.475 Sum_probs=32.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
+.++|||+|++|+++|..|.+.| ++|+|+||.+..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G--~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARG--WAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcc
Confidence 68899999999999999999999 999999998754
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.06 Score=61.87 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=31.7
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
+++|||+|.+|+++|..|.+.| ++|+|+|++ .+++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G--~~V~l~e~~-~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRG--HSVTLLERG-DIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTT--SEEEEEESS-STTS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--CeEEEEeec-cccc
Confidence 4789999999999999999999 999999998 5654
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.14 Score=51.07 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=29.4
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+|+|||||..|.++|..|.+ .+++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~--~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD--NGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH--CTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHH--cCCEEEEEeccH
Confidence 69999999999999999999 669999999854
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.06 Score=63.49 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=33.1
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w 780 (1129)
+|+|||+|.+|++||..+.+.| .+|+|+||....||.-
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G--~~V~lvek~~~~gg~~ 38 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAG--AKVLLVEKGPRLGGSS 38 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTT--T-EEEEESSSGGGSGG
T ss_pred CEEEECCCHHHHHHHHHHhhhc--CeEEEEEeeccccccc
Confidence 5799999999999999999999 9999999999888843
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.11 Score=62.89 Aligned_cols=36 Identities=19% Similarity=0.428 Sum_probs=32.7
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..+.|++|||+|++|-++|+.|.+ ++.+|+|+|+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~--~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSD--AGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcC--CCCeEEEEeCCC
Confidence 456899999999999999999996 889999999974
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.061 Score=62.74 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=32.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+||.+..
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G--~~v~v~E~~~~~ 40 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARG--HSVTVVERAARN 40 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcC--CcEEEEeCCCcc
Confidence 46899999999999999999999 999999998754
|
|
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.066 Score=69.06 Aligned_cols=44 Identities=36% Similarity=0.523 Sum_probs=39.7
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE 784 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~ 784 (1129)
..+++|||+|++|+++|..|.+.| ++|+|||+++.+||.|....
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G--~~V~VlEa~~~vGGri~t~~ 736 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQG--FSVTVLEARSRIGGRVYTDR 736 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCC--CcEEEEeeccCCCCceeecc
Confidence 356899999999999999999999 99999999999999987653
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.067 Score=63.06 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=32.7
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
.-+++|||+|++|+++|..|.+.| ++|+|+||++..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 53 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSG--LRIALIEAQPAE 53 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCC--CEEEEEecCCcc
Confidence 457899999999999999999999 999999998753
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.066 Score=62.39 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=31.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADN 775 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~ 775 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+||.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G--~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCC--CCEEEEECCCC
Confidence 46899999999999999999999 99999999873
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.068 Score=62.58 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=31.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADN 775 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~ 775 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+|+.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G--~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSG--LRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCC--CEEEEEeCCCC
Confidence 57899999999999999999999 99999999875
|
|
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.08 Score=65.98 Aligned_cols=44 Identities=25% Similarity=0.387 Sum_probs=39.4
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE 784 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~ 784 (1129)
...++|||+|.+|+.+|..|.+.| ++|+|+|+++.+||.+....
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G--~~V~VlE~~~riGGRi~T~~ 227 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFG--FKVTVLEGRKRPGGRVYTKK 227 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCC--CcEEEEEccCcCCCCcceec
Confidence 367899999999999999999999 99999999999999776443
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.082 Score=63.76 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=37.3
Q ss_pred eeeccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcc
Q psy12350 736 FIKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGT 779 (1129)
Q Consensus 736 ~~~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~ 779 (1129)
+....+|+|||+|.+|+++|..+.+.| .+|+|+||.+.+||.
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~G--a~VivlEK~~~~GG~ 99 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDAG--MNPVILEKMPVAGGN 99 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCCc
Confidence 334568999999999999999999999 999999999988874
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.072 Score=62.00 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=30.7
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD 774 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~ 774 (1129)
.+++|||+|++|+++|..|.+.| ++|+|||+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G--~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQG--RSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCC--CcEEEEcCCC
Confidence 47899999999999999999999 9999999864
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.077 Score=61.91 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=32.8
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
..+++|||+|++|+++|..|.+.| .+|+|+||....
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSG--LRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCc
Confidence 457899999999999999999999 999999998764
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.076 Score=62.53 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=31.3
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
+++|||+|++|+++|..|.+.| ++|+||||.+.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 35 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRG--IEVVVFEAAPEL 35 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCC--CcEEEEEcCCcc
Confidence 5789999999999999999999 999999998754
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.081 Score=61.81 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=33.1
Q ss_pred cCccccccCCchhhHHHHHHhh--CCCcceEEEcccCCcCc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEA--GNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~--g~~~~v~v~E~~~~~GG 778 (1129)
.+++|||+|.+|+++|++|.+. | .+|+|+||...+|+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g--~~V~llE~~~~~~~ 41 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPG--ARIAVLEKESGPAR 41 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCC--CeEEEEeCCCcccc
Confidence 5789999999999999999999 7 99999999876643
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.082 Score=62.21 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=32.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.+++|||+|..|+++|.+|.+.| .+|+|+||++.+|
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g--~~V~vle~~~~~~ 37 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRG--YQVTVFDRHRYAA 37 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCCC
Confidence 37899999999999999999999 9999999987554
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.073 Score=62.06 Aligned_cols=31 Identities=35% Similarity=0.453 Sum_probs=29.6
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQA 773 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~ 773 (1129)
+++|||+||+|+++|+.|.+.| ++|+|+|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G--~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAG--IETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCC--CcEEEEECC
Confidence 6899999999999999999999 999999997
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.17 Score=50.23 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEe
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVG 899 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~ 899 (1129)
++.||+|+|||||..|...+..|.+.|++|+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 5689999999999999999999999999999994
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.16 Score=58.16 Aligned_cols=31 Identities=35% Similarity=0.539 Sum_probs=28.7
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+|+|||+|.|||++|..|.+ . ++|+|+-|.+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~--~-~~V~vltk~~ 39 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAP--S-FRVTVLTKGP 39 (518)
T ss_pred cEEEECCcHHHHHHHHhCCC--C-CcEEEEeCCC
Confidence 89999999999999999998 4 8999999965
|
|
| >KOG2852|consensus | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.085 Score=55.46 Aligned_cols=44 Identities=30% Similarity=0.459 Sum_probs=35.7
Q ss_pred CCCcceEEEEcCChHHHHHHHHhhcCC----CCceEEEEcccCCcCce
Q psy12350 6 TSPTLHIGVIGGGAGGLTATKRLTEPG----SGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 6 ~~~~~~V~IIGaG~aGl~aA~~l~~~~----~~~~v~v~E~~~~~GG~ 49 (1129)
+...++|+|+|||.-|..+|.+|.+++ -.+.|+|||+..-.||.
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga 54 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA 54 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence 455689999999999999999999954 12689999997765543
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.1 Score=63.06 Aligned_cols=42 Identities=24% Similarity=0.429 Sum_probs=36.5
Q ss_pred eeeccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc
Q psy12350 736 FIKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 736 ~~~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w 780 (1129)
|-...+++|||+| +|+++|.++.+.| .+|+|+||.+..||.-
T Consensus 4 ~d~~~DVvVVG~G-aGl~aA~~aa~~G--~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 4 WDEEVDVLVAGSG-GGVAGAYTAAREG--LSVALVEATDKFGGTT 45 (513)
T ss_pred CCCccCEEEECch-HHHHHHHHHHHCC--CcEEEEecCCCCCcce
Confidence 3345689999999 9999999999999 9999999998878743
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.087 Score=61.84 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=31.9
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADN 775 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~ 775 (1129)
.+++|||+|++|+++|..|.+.|+.++|+|+||.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 367999999999999999999865599999999764
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.079 Score=62.00 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=31.0
Q ss_pred eccCccccccCCchhhHHHHHHhh---CCCcceEEEccc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEA---GNGFTCTTFEQA 773 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~---g~~~~v~v~E~~ 773 (1129)
..-+++|||+|++|+++|..|.+. | ++|+|+||.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G--~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGG--LPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCC--CEEEEEeCC
Confidence 445789999999999999999998 9 999999995
|
|
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.1 Score=62.89 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=36.2
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGT 779 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~ 779 (1129)
...+|+|||+|.+|+++|.++.+.| .+|+|+||....||.
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G--~~VillEK~~~~gG~ 58 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAG--ARVLVLERAAGAGGA 58 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCCCCc
Confidence 3458899999999999999999999 999999999888874
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.1 Score=63.72 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=35.7
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w 780 (1129)
-.++|||+|.+|+++|..|.+.| ++++++|+++.+||.-
T Consensus 94 ~~v~iiG~G~~Gl~~a~~l~~~g--~~~~~~e~~~~~gG~~ 132 (567)
T PLN02612 94 LKVVIAGAGLAGLSTAKYLADAG--HKPILLEARDVLGGKV 132 (567)
T ss_pred CCEEEECCCHHHHHHHHHHHhcC--CeEEEEecCCCCCCcc
Confidence 35799999999999999999999 9999999999999953
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.1 Score=61.42 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=31.2
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.++|||+|++|+++|..|.+.|. ++|+||||.+.++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~-~~v~v~Er~~~~~ 37 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSH-LNVQLFEAAPAFG 37 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCC-CCEEEEecCCcCC
Confidence 36899999999999999999871 4999999988764
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.093 Score=61.10 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=30.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQA 773 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~ 773 (1129)
-+++|||+|++|+++|..|.+.| ++|+|+|+.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G--~~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAG--LDVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CcEEEEccC
Confidence 36899999999999999999999 999999997
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.094 Score=61.28 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=32.0
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADN 775 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~ 775 (1129)
..+++|||+|++|+++|..|.+.| ++|+|+||.+.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G--~~v~liE~~~~ 40 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAG--LSVALVEGREP 40 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCC--CEEEEEeCCCC
Confidence 457899999999999999999999 99999999764
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.17 Score=58.06 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=30.0
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
++|+|||||..|+++|..|++.|.+|+++++.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~r 34 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMR 34 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence 57999999999999999999999999999854
|
|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.11 Score=59.61 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=36.7
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
+.-+++|||||..|+++|+.|.+.+|+.+|+|+||.+.+|
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a 41 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA 41 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence 3458899999999999999999999999999999998876
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.093 Score=61.63 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=30.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD 774 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~ 774 (1129)
-+++|||+|++|+++|..|.+.| ++|+|+|+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G--~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSG--LEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCC--CEEEEEcCCC
Confidence 37899999999999999999999 9999999976
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.11 Score=62.67 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=31.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADN 775 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~ 775 (1129)
.+|+|||+|++|+++|..|.+.| ++|+|+||.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G--~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAG--VKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Confidence 47899999999999999999999 99999999864
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.1 Score=60.93 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=31.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADN 775 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~ 775 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+||++.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G--~~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAG--IDSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcC--CCEEEEEcCCc
Confidence 46899999999999999999999 99999999874
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.21 Score=51.94 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEec
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGS 900 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~ 900 (1129)
++.||+|+|||||.+|.--+..|.+.|++|+++..
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp 40 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAE 40 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence 36799999999999999999999999999999964
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.12 Score=60.65 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=38.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
..+++|||+|.+|+.+|..|.+.| .+|.++|+++..||.|.
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~G--kkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVNG--KKVLHMDRNPYYGGESA 44 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhCC--CEEEEecCCCCcCcccc
Confidence 357899999999999999999999 99999999999999887
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.1 Score=60.45 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=30.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD 774 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~ 774 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G--~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKG--IKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCC--CeEEEecCCC
Confidence 36899999999999999999999 9999999864
|
|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.13 Score=63.21 Aligned_cols=41 Identities=29% Similarity=0.485 Sum_probs=36.8
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
..+++|||+|.+|+++|..+.+.| .+|+|+||...+||.-.
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G--~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLG--LDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC--CeEEEEecCCCCCCccc
Confidence 458899999999999999999999 99999999998887543
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.13 Score=60.10 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=32.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+|+.+..
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G--~~v~liE~~~~~ 42 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAG--ASVALVAPEPPY 42 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCC--CeEEEEeCCCCC
Confidence 47899999999999999999999 999999998653
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.16 Score=61.83 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=38.7
Q ss_pred eeccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC
Q psy12350 737 IKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT 783 (1129)
Q Consensus 737 ~~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~ 783 (1129)
....+++|||+| +|+++|..+.+.| .+|+|+||.+.+||+....
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G--~~v~v~Ek~~~~GG~~~~~ 57 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELG--LSVLIVEKSSYVGGSTARS 57 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCC--CcEEEEecCCCCcCcccCc
Confidence 345689999999 8999999999999 9999999999999977643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1129 | ||||
| 2xvi_A | 464 | Crystal Structure Of The Mutant Bacterial Flavin Co | 4e-23 | ||
| 2xve_A | 464 | Crystal Structure Of Bacterial Flavin-Containing Mo | 6e-23 | ||
| 2xlr_A | 461 | Joint-Functions Of Protein Residues And Nadp(H) In | 6e-23 | ||
| 2xls_A | 461 | Joint-Functions Of Protein Residues And Nadp(H) In | 6e-23 | ||
| 2vq7_A | 461 | Bacterial Flavin-Containing Monooxygenase In Comple | 7e-23 | ||
| 2xlp_A | 461 | Joint-Functions Of Protein Residues And Nadp(H) In | 7e-23 | ||
| 2xvf_A | 464 | Crystal Structure Of Bacterial Flavin-Containing Mo | 1e-20 | ||
| 2gv8_A | 447 | Crystal Structure Of Flavin-Containing Monooxygenas | 2e-12 | ||
| 1vqw_A | 457 | Crystal Structure Of A Protein With Similarity To F | 3e-12 | ||
| 4a9w_A | 357 | Flavin-Containing Monooxygenase From Stenotrophomon | 8e-09 | ||
| 4a9w_A | 357 | Flavin-Containing Monooxygenase From Stenotrophomon | 6e-08 |
| >pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin Containing Monooxygenase (Y207s) Length = 464 | Back alignment and structure |
|
| >pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464 | Back alignment and structure |
|
| >pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78asp Mutant Length = 461 | Back alignment and structure |
|
| >pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78lys Mutant Length = 461 | Back alignment and structure |
|
| >pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With Nadp: Native Data Length = 461 | Back alignment and structure |
|
| >pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen- Activation By Flavin-Containing Monooxygenase: Asn78ser Mutant Length = 461 | Back alignment and structure |
|
| >pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464 | Back alignment and structure |
|
| >pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo) From S.Pombe And Nadph Cofactor Complex Length = 447 | Back alignment and structure |
|
| >pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin- Containing Monooxygenases And To Mammalian Dimethylalanine Monooxygenases Length = 457 | Back alignment and structure |
|
| >pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas Maltophilia Length = 357 | Back alignment and structure |
|
| >pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas Maltophilia Length = 357 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1129 | |||
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 4e-63 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 1e-33 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 2e-28 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 2e-22 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 7e-22 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 1e-12 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 2e-53 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 7e-31 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 2e-22 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 6e-20 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 1e-18 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 6e-15 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 1e-33 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 2e-26 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 6e-14 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 6e-09 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 2e-13 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 3e-13 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 1e-09 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 2e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-04 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 1e-06 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 7e-06 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 2e-06 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 2e-06 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 8e-04 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 6e-06 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 9e-04 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 7e-06 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 1e-05 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 2e-05 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 2e-05 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 3e-05 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 7e-05 |
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464 | Back alignment and structure |
|---|
Score = 221 bits (564), Expect = 4e-63
Identities = 94/424 (22%), Positives = 155/424 (36%), Gaps = 55/424 (12%)
Query: 748 GPGGLTATKRLTEAG----NGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSL 803
GP G+ + A FE+ + GG W YT G D+ G PVHSSMY+ L
Sbjct: 11 GPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYL 70
Query: 804 KTNLPKDLMELCGYG---HKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRD 860
+N PK+ +E Y H G SY + + + Y + + +
Sbjct: 71 WSNGPKECLEFADYTFDEHFGKPIASYPPREVLWD-YIKGRVEKAGVRKYIRFNTAVRHV 129
Query: 861 YRTPEPFAGKQ-------------------AVVVGSGQSGLDITLDIA------------ 889
+ + VV +G +
Sbjct: 130 EFNED---SQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHA 186
Query: 890 --------TTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD 941
K ++VGS S DI + +S + P N +P+
Sbjct: 187 HDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWDERPN 246
Query: 942 VAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKN-VQPLYKHTINIE 1000
+ + F DGS E+VD I+ CTGY +H+PFL++ + N+ LYK + +
Sbjct: 247 LVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVWED 306
Query: 1001 HPTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNP 1060
+P F +G+ FN+FD Q + ++ G + LPSKEEM AD+ +
Sbjct: 307 NPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWR----EKELTL 362
Query: 1061 NTFHIIGHRSENFLNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFRNNKYQIFNDQ 1120
T + +++ ++I M S P K + + E+ + FR++ Y+
Sbjct: 363 VTAEEMYTYQGDYIQNLIDMTDYPSFDIPATNKTFLEWKHHKKENIMTFRDHSYRSLMTG 422
Query: 1121 AYVR 1124
Sbjct: 423 TMAP 426
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464 | Back alignment and structure |
|---|
Score = 135 bits (340), Expect = 1e-33
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 1/155 (0%)
Query: 580 YNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVF 639
++ P PEF+G + ILH+ D+R F K ++VGS S DI +
Sbjct: 165 FSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKL 224
Query: 640 LSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYTNHYPFLHES 699
+S + P N +P++ + F DGS E+VD I+ CTGY +H+PFL++
Sbjct: 225 ISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDD 284
Query: 700 CGIKVVNKN-VQPLYKHTINIEHPTMFILGVSFTI 733
+ N+ LYK + ++P F +G+
Sbjct: 285 LRLVTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQW 319
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 2e-28
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 12 IGVIGGGAGGLTATKRLTEPG----SGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHS 67
I ++G G G+ + FE+ + GG W YT +TG D+ G PVHS
Sbjct: 5 IAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHS 64
Query: 68 SMYKSLKTNLPKEIMELSGYH---HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNK 124
SMY+ L +N PKE +E + Y H G P SY + +Y+ + +R N
Sbjct: 65 SMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNT 124
Query: 125 NVQPLYKH 132
V+ + +
Sbjct: 125 AVRHVEFN 132
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-22
Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 4/136 (2%)
Query: 126 VQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQ 185
LYK ++ ++P IG+ F +FD Q + ++ G + LPSK EM AD+
Sbjct: 295 PLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMA 354
Query: 186 DVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE 245
L + G Y+ +L M S P K + E E+
Sbjct: 355 WREKELTLVTAEEMYTYQGD----YIQNLIDMTDYPSFDIPATNKTFLEWKHHKKENIMT 410
Query: 246 FRKDKYKIINEKAFVR 261
FR Y+ +
Sbjct: 411 FRDHSYRSLMTGTMAP 426
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464 | Back alignment and structure |
|---|
Score = 99.3 bits (247), Expect = 7e-22
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 267 NGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPNNVVKKPDIAELTPTGVRFQDGSYEQ 326
+ S DI +S + ++P N ++P++ + F DGS E+
Sbjct: 205 SSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEK 264
Query: 327 VDIILYCTGYTYRYPFLHESCGIKVVNKN-VQPLYKHLINIEHPSMCIIG 375
VD I+ CTGY + +PFL++ + N+ LYK ++ ++P IG
Sbjct: 265 VDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVWEDNPKFFYIG 314
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 1e-12
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 493 IISSRNYSNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHDIST 552
+ + ++S P P+F+G + I+H+H++R F K ++VGS S DI
Sbjct: 159 VCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYK 218
Query: 553 EATTVSAYLRFDNKTITK 570
K
Sbjct: 219 YGAKKLISCYRTAPMGYK 236
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447 | Back alignment and structure |
|---|
Score = 193 bits (491), Expect = 2e-53
Identities = 77/442 (17%), Positives = 139/442 (31%), Gaps = 78/442 (17%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIG-----------------CDQ 790
GP GL K L T FE+ + GG W YT +
Sbjct: 15 GPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGP 74
Query: 791 YGLP-VHSSMYKSLKTNLPKDLMELCGYGHKGNADKSYIGAKDV---LENY--NHPIYPE 844
LP S +Y+ L+TN P +LM C K + + Y + +
Sbjct: 75 AALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQT-LQFPHRHTIQEYQRIYAQPLLPFIK 133
Query: 845 FKGKDMCQIPI----------LHSRDYRTPEPFAGKQAVVVGSGQ---------SGLDIT 885
+ + + + F AV + +G GLD
Sbjct: 134 LATDVLDIEKKDGSWVVTYKGTKAGSPISKDIF---DAVSICNGHYEVPYIPNIKGLDEY 190
Query: 886 LDIAT---------------TGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSL 930
G+ +VVG S D+ + A
Sbjct: 191 AKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSL--LGGGD 248
Query: 931 CLPNNVVLKPDVAELTPTG--VRFQDGSYEQ-VDIILCCTGYSNHYPFLHES------CG 981
++ P++ + PT + + G +D ++ CTGY PF +
Sbjct: 249 IQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETK 308
Query: 982 IKVVNKNVQPLYKHTINIEHPTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEE 1041
+ +V +Y+H I PT+ +G+ H + F Q ++ G + LPSKEE
Sbjct: 309 LIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEE 368
Query: 1042 MLADTKQEVLAHLNEGQNPNTFHIIGHRSE-NFLNSIISMMRDESPLPPVLL--KVYFDS 1098
L + + + N +H + + + ++N + + +P+ + +
Sbjct: 369 QLKWQDELMFS---LSGANNMYHSLDYPKDATYINKLHDWCKQATPVLEEEFPSPYWGEK 425
Query: 1099 YGQLTEDFIGFRNNKYQIFNDQ 1120
+ E+ R + I +
Sbjct: 426 ERSIRENMWSIRAKFFGIEPPK 447
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 7e-31
Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 15/170 (8%)
Query: 580 YNHPIYPEFKGKDMCQI----PILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRA 635
Y P P KG D +LHS +R PE F G+ +VVG S D+ + A
Sbjct: 176 YEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVA 235
Query: 636 STVFLSHHSERVTSLCLPNNVVLKPDVAELTPTG--VRFQDGSYEQ-VDIILCCTGYTNH 692
++ P++ + PT + + G +D ++ CTGY
Sbjct: 236 KHPIYQSL--LGGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYS 293
Query: 693 YPFLHES------CGIKVVNKNVQPLYKHTINIEHPTMFILGVSFTIEEF 736
PF + + +V +Y+H I PT+ +G++ + F
Sbjct: 294 VPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPF 343
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-22
Identities = 30/122 (24%), Positives = 42/122 (34%), Gaps = 19/122 (15%)
Query: 12 IGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTG-------------- 57
I +IG G GL K L + T FE+ + GG W YT
Sbjct: 9 IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTT 68
Query: 58 ---RDQYGLP-VHSSMYKSLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADN 113
LP S +Y+ L+TN P E+M K + + + EY +A
Sbjct: 69 EPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQT-LQFPHRHTIQEYQRIYAQP 127
Query: 114 FN 115
Sbjct: 128 LL 129
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447 | Back alignment and structure |
|---|
Score = 93.1 bits (231), Expect = 6e-20
Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 6/155 (3%)
Query: 106 YLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQ 165
+ + L +V +Y+H+ I P++ +G+ V F Q F +
Sbjct: 296 FPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLAR 355
Query: 166 LMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMG-QRSEKYLNSLCSMMRDESPV 224
+ G + LPSK E L ++ + N +H + + Y+N L + +PV
Sbjct: 356 VWSGRLKLPSKEEQLKWQDELMF---SLSGANNMYHSLDYPKDATYINKLHDWCKQATPV 412
Query: 225 PPVLL--KIYFESFARCSEDFTEFRKDKYKIINEK 257
+ E E+ R + I K
Sbjct: 413 LEEEFPSPYWGEKERSIRENMWSIRAKFFGIEPPK 447
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447 | Back alignment and structure |
|---|
Score = 88.9 bits (220), Expect = 1e-18
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 12/126 (9%)
Query: 267 NGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPNNVVKKPDIAELTPTG--VRFQDGSY 324
S D+ ++ A ++ + P+I + PT + + G
Sbjct: 220 GASSANDLVRHLTPVAKHPIYQSLLG--GGDIQNESLQQVPEITKFDPTTREIYLKGGKV 277
Query: 325 EQ-VDIILYCTGYTYRYPFLHES------CGIKVVNKNVQPLYKHLINIEHPSMCIIGYT 377
+D ++YCTGY Y PF + + +V +Y+H+ I P++ +G
Sbjct: 278 LSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLA 337
Query: 378 YR-YPF 382
PF
Sbjct: 338 LHVVPF 343
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 6e-15
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 493 IISSRNYSNPVYPDFKGKDVCQI----PIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITH 548
I + +Y P P+ KG D ++HS +R PE F G+ +VVG S D+
Sbjct: 170 SICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVR 229
Query: 549 DISTEATTV 557
++ A
Sbjct: 230 HLTPVAKHP 238
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 1e-33
Identities = 58/335 (17%), Positives = 103/335 (30%), Gaps = 89/335 (26%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNL 807
G GL+A L +G + + + GG W + + SL
Sbjct: 12 GQSGLSAGYFLRRSGLSYVI--LDAEASPGGAWQHA----------------WHSLHLFS 53
Query: 808 PKDLMELCGYGHKGNADKSYIGAKDV---LENY--------------------------- 837
P + G+ + Y +V L Y
Sbjct: 54 PAGWSSIPGWPMPASQG-PYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVV 112
Query: 838 -------------------NHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSG 878
PE++G + LHS Y TP PFAG + ++G G
Sbjct: 113 ARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGG 172
Query: 879 QSGLDITLDIATTGKQAVVVGSGQSGLDITLD---IATRASTVFLSHHSER--------- 926
SG I +++T + + + L +D + RA+ + + R
Sbjct: 173 NSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGF 232
Query: 927 --------VTSLCLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHE 978
V + P A +PTG+++ DG+ D ++ CTG+ L +
Sbjct: 233 GDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFRPALSHL-K 291
Query: 979 SCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT 1013
+ V+ + P++++LG
Sbjct: 292 GLDLVTPQGQVEVDGSGLRALAVPSVWLLGYGDWN 326
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-26
Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 45/233 (19%)
Query: 499 YSNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHDISTEATTVS 558
+ P+++G + +HS Y TP PFAG R ++G G SG I ++ST A T
Sbjct: 131 WGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVAETTW 190
Query: 559 AYLRFDNKTITKRKKFDKGRNYNHPIYPEFKGKDMCQIPI---LHSRDYRTPEPFAGKQA 615
F + + G+ + + ++ R P+ G
Sbjct: 191 ITQH--------EPAF---------LADDVDGRVLFERATERWKAQQEGREPDLPPGGFG 233
Query: 616 VVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDG 675
+V V + P A +PTG+++ DG
Sbjct: 234 DIVMVPP------------------------VLDARARGVLAAVPPPARFSPTGMQWADG 269
Query: 676 SYEQVDIILCCTGYTNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILG 728
+ D ++ CTG+ L + + V+ + P++++LG
Sbjct: 270 TERAFDAVIWCTGFRPALSHL-KGLDLVTPQGQVEVDGSGLRALAVPSVWLLG 321
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 6e-14
Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 19/104 (18%)
Query: 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSL 73
VIGGG GL+A L G + + + GG W + + SL
Sbjct: 8 VIGGGQSGLSAGYFLRRSGLSYVI--LDAEASPGGAWQHA----------------WHSL 49
Query: 74 KTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLR 117
P + G+ Y A +VL YL + + L
Sbjct: 50 HLFSPAGWSSIPGWPMPASQG-PYPARAEVLAYLAQYEQKYALP 92
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 6e-09
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 294 VKKLRFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVN 353
V R + P A +PTG+++ DG+ D +++CTG+ L + +
Sbjct: 241 VLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFRPALSHL-KGLDLVTPQ 299
Query: 354 KNVQPLYKHLINIEHPSMCIIGYTYRYPFLHES 386
V+ L + PS+ ++GY +
Sbjct: 300 GQVEVDGSGLRALAVPSVWLLGYGDWNGMASAT 332
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 2e-13
Identities = 37/224 (16%), Positives = 72/224 (32%), Gaps = 23/224 (10%)
Query: 837 YNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAV 896
YN P P G +H + + F Q VV+G +SG D +A G
Sbjct: 142 YNFPKKPFKYG--------IHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIA 193
Query: 897 VVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTG----VRF 952
+ S D D + R S + + + V ++ + F
Sbjct: 194 LYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARI-EMNVHYTVKDIDFNNGQYHISF 252
Query: 953 QDGSYEQV--DIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVP 1010
G + IL + P + + + + + +P +F++G
Sbjct: 253 DSGQSVHTPHEPILATGFDATKNPIV-QQLFVTTNQDIKLTTHDESTR--YPNIFMIGAT 309
Query: 1011 RHTLLFNL-----FDLQVRLFQQLMQGHITLPSKEEMLADTKQE 1049
L F + + L+ LP+K+E++ + ++
Sbjct: 310 VENDNAKLCYIYKFRARFAVLAHLLTQREGLPAKQEVIENYQKN 353
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 3e-13
Identities = 30/190 (15%), Positives = 55/190 (28%), Gaps = 43/190 (22%)
Query: 580 YNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVF 639
YN P P G +H + + F Q VV+G +SG D +A S +
Sbjct: 142 YNFPKKPFKYG--------IHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIA 193
Query: 640 LSHHSERVTSLCLPNNVVLKP----DVAELTPTG----------------------VRFQ 673
L + + +V L P + + G + F
Sbjct: 194 LYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFD 253
Query: 674 DGSYEQV--DIILCCTGYTNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVS- 730
G + IL P + + + + + +P +F++G +
Sbjct: 254 SGQSVHTPHEPILATGFDATKNPIV-QQLFVTTNQDIKLTTHDESTR--YPNIFMIGATV 310
Query: 731 ---FTIEEFI 737
+I
Sbjct: 311 ENDNAKLCYI 320
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 493 IISSRNYSNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHDIST 552
+++ +Y+ P P G +H E + F + VV+G SG D + ++
Sbjct: 136 FVATGDYNFPKKPFKYG--------IHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAK 187
Query: 553 EATTVSAYLR 562
+ ++ Y
Sbjct: 188 NGSDIALYTS 197
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 10/105 (9%)
Query: 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYG-LPVHSSMYKS 72
+IG GA G+ L + G T + VG ++ + + + S
Sbjct: 9 IIGAGAAGIGMAITLKD--FGITDVIILEKGTVGHSF-------KHWPKSTRTITPSFTS 59
Query: 73 LKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLR 117
+P ++ +I+ EYL A+++ L
Sbjct: 60 NGFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELN 104
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 2e-09
Identities = 106/695 (15%), Positives = 205/695 (29%), Gaps = 207/695 (29%)
Query: 87 YHHKGHPD----KSYIAANDVLE-YLNDFADNFNLRNLCLVNKNVQPLYKHLIN---IEH 138
+HH H D + D+L + + F DNF+ C K+VQ + K +++ I+H
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFD----C---KDVQDMPKSILSKEEIDH 53
Query: 139 PSMCIIGIPRDTVGFY-LFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNP 197
II G LF +L+ E+ V+ + E
Sbjct: 54 ----IIMSKDAVSGTLRLFWT--------------------LLSKQEEMVQKFVEEVLRI 89
Query: 198 NAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF------RKDKY 251
N Y L S ++ E P ++ ++Y E R D F R Y
Sbjct: 90 N-----------Y-KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 252 KIINEKAFVRDP----------GAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN 301
+ + P G+ G + + A V LS+ + +
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGS--GKTWV---------ALDVCLSYKVQ----CKMDF 182
Query: 302 NV-------VKKPD--IAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVV 352
+ P+ + L + + D ++ S ++
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD-------HSSNIKLRIHSIQAELR 235
Query: 353 NKNVQPLYKH--LI--NIEHPSM-------CIIGYTYRYPFLHESCGIKVVNKNVQPLYK 401
Y++ L+ N+++ C I T R+ +V +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF--------KQVTDFLSAATTT 287
Query: 402 HLINIEHPSMCIIGI-PVESCGI--KVVNKNVQPLYKHLINIDHP-SMCIIG----IPGD 453
H I+++H SM + P E + K ++ Q L + ++ +P + II
Sbjct: 288 H-ISLDHHSM---TLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLSIIAESIRDGLA 342
Query: 454 TVVFYMFDLQDKIRPGRGNPRPSACEA--DALPTNLTRLTYIISSRNYSNPVYPDFKGKD 511
T + DK+ + E+ + L R + S V+P
Sbjct: 343 TWDNWKHVNCDKLT--------TIIESSLNVLEPAEYRKMF----DRLS--VFPP----S 384
Query: 512 VCQIPIM------HSHEYRTPEPFAG---KRAVVVGSGPSGLDITHDISTE--------- 553
IP + K ++V I E
Sbjct: 385 A-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 554 ---ATTVSAY---LRFDNKTITKRKKFDKGRNY--NHPIYPEFKGKDMCQIPILHSR--- 602
+ V Y FD+ + Y +H + K + + L
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIP----PYLDQYFYSHIGH-HLKNIEHPERMTLFRMVFL 498
Query: 603 DYRTPEPFAGKQAVVVGSGQSG----LDITLDIATRASTVFLSH--HSERVTSLC--LPN 654
D+R F ++ + + L+ + + + + V ++ LP
Sbjct: 499 DFR----FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 655 ---NVVLKPD-----VAELTPTGVRFQDGSYEQVD 681
N++ +A + F++ +++QV
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEE-AHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 4e-07
Identities = 75/505 (14%), Positives = 148/505 (29%), Gaps = 143/505 (28%)
Query: 7 SPTLHIGVIG-GGAG--GLTATKRLTEPGSGFTCTTFEQTDNVGGT--WVYTEQTGRDQY 61
P ++ + G G+G + C +++ + W+ + +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALD----------VCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 62 GLPVHSSMYKSLK----------TNLPKEIMELSGY-----HHKGHPDKSYIAANDVLEY 106
L + + + +N+ I + K + + +V
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-NCLLVLLNV--Q 254
Query: 107 LNDFADNFNLRNLC--LV---NKNV-----QPLYKHLINIEHPSMCIIGI-PRDTVGFYL 155
+ FNL C L+ K V H I+++H SM + P + L
Sbjct: 255 NAKAWNAFNLS--CKILLTTRFKQVTDFLSAATTTH-ISLDHHSM---TLTPDEVKSLLL 308
Query: 156 FDLQVRFF---LQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPN--AFHIMGQRSEKY 210
L R +++ + P + ++A++ +D ++ N + + S
Sbjct: 309 KYLDCRPQDLPREVLTTN---PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 211 LNSL--------CSMMRDESPVPPVLLKIY-FESFARCSEDF-TEFRKDKYKIINEKAFV 260
L S+ + +P +LL + F+ + KY ++
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH--KYSLVE----- 418
Query: 261 RDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPNNVVKKPDIAELTPTGVRFQ 320
+ P + I E L E+ L ++V +I P
Sbjct: 419 KQP--KESTISI---PSIYLE-----LKVKLENEYALH--RSIVDHYNI----PKTFDSD 462
Query: 321 DGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY 380
D +D Y Y + H HL NIEHP + +R
Sbjct: 463 DLIPPYLD------QYFYSH-IGH-----------------HLKNIEHPERMTL---FRM 495
Query: 381 PFL----------HES---CGIKVVNKNVQPL--YKHLINIEHPSMCIIGIPVESCGIKV 425
FL H+S + +Q L YK I P + +
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL--------VNA 547
Query: 426 VNKNVQPLYKHLINIDHPSMCIIGI 450
+ + + ++LI ++ I
Sbjct: 548 ILDFLPKIEENLIC--SKYTDLLRI 570
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 2e-05
Identities = 84/482 (17%), Positives = 144/482 (29%), Gaps = 132/482 (27%)
Query: 485 TNLTRLTY--IISSRNYSNPVYPDFKGKDVCQIP--IMHSHEYRTPEPFAGKRAVVVGSG 540
T + Y I+S + + +F KDV +P I+ E ++
Sbjct: 11 TGEHQYQYKDILS--VFEDAFVDNFDCKDVQDMPKSILSKEEI--------DHIIMSKDA 60
Query: 541 PSGLDITHDISTEATTVSAYLRFDNKTITKRKKFDKGRNYN---HPIYPEFKGKDMCQIP 597
SG + +F + + NY PI E + M
Sbjct: 61 VSGTLRLFWT-LLSKQEEMVQKFVEEVLRI--------NYKFLMSPIKTEQRQPSMMTRM 111
Query: 598 ILHSRD--YRTPEPFAG------------KQA---------VVV----GSGQSGL--DIT 628
+ RD Y + FA +QA V++ GSG++ + D+
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 629 LDIATRAS---TVF---LSHHS------ERVTSLC--LPNNVVLKPDVAELTPTGVR--- 671
L + +F L + + E + L + N + D + +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 672 ------FQDGSYEQVDIIL---CCTGYTNHYPFLHESCGIKVV--NKNV----QPLYKHT 716
+ YE ++L N + SC I + K V
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL---SCKILLTTRFKQVTDFLSAATTTH 288
Query: 717 INIEHPTMFILGVSFTIEEFIKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTF-EQADN 775
I+++H +M + T +E + +D P L R N + E +
Sbjct: 289 ISLDHHSM-----TLTPDEVKSLLLKYLD-CRPQDL---PREVLTTNPRRLSIIAESIRD 339
Query: 776 IGGTWLYTEHIGCDQYGLPVHSS-----------MYKSL-----KTNLPKDLMELCGYGH 819
TW +H+ CD+ + SS M+ L ++P L+ L +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 820 KGN---------ADKSYIGAKDVLEN--YNHPIYPEFKGKDMCQIPILHSR---DYRTPE 865
+ S + K E+ IY E K K LH Y P+
Sbjct: 400 IKSDVMVVVNKLHKYSLV-EKQPKESTISIPSIYLELKVKLE-NEYALHRSIVDHYNIPK 457
Query: 866 PF 867
F
Sbjct: 458 TF 459
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 2e-04
Identities = 60/372 (16%), Positives = 104/372 (27%), Gaps = 112/372 (30%)
Query: 814 LCGYGHKGNADKSYIGAKDVLE-NYN---HPIYPEFKGKDMCQIPILHSRD--YRTPEPF 867
L + ++ +VL NY PI E + M + RD Y + F
Sbjct: 71 LLSKQE--EMVQKFVE--EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 868 AGKQAVVVGSGQSGLDITLDIATTGKQAVV---VGSGQSGLDITLDIATRASTVFLSHHS 924
A K V L L K ++ +GSG++
Sbjct: 127 A-KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT--------------------- 164
Query: 925 ERVTSLCLPNNVVLKPDVAELTPTGVRF-----QDGSYEQVDII---LCCTGYSNHYPFL 976
+ +V L V + F S E V + L N
Sbjct: 165 ------WVALDVCLSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 977 HESCGIKVVNKNVQPLYKHTINIE-HPT-MFIL-GVPRHTLLFNLFDLQVR--------- 1024
S IK+ ++Q + + + + + +L V ++ +N F+L +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRFKQ 276
Query: 1025 LFQQLM---QGHITL---------PSKEEMLA---DTKQEVLAHLNEGQNPNTFHIIG-- 1067
+ L HI+L + +L D + + L NP II
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 1068 -----HRSENF-------LNSIISM-------------------MRDESPLPPVLLKVY- 1095
+N+ L +II + +P +LL +
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 1096 FDSYGQLTEDFI 1107
FD +
Sbjct: 397 FDVIKSDVMVVV 408
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 1e-06
Identities = 32/243 (13%), Positives = 56/243 (23%), Gaps = 26/243 (10%)
Query: 500 SNPVYPDFKGKDVCQIPIMHSHEYRT------PEPFAGKRAVVVGSGPSGLDITHDI--S 551
P P + H +Y + ++G G S + D+ S
Sbjct: 190 GTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDS 249
Query: 552 TEATTVSAYLRFDNKTITKRKKFDKGRNYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFA 611
+ LR F P + + + R+ E
Sbjct: 250 YPSVQADMILRASALKPADDSPF--VNEVFAPKFTDL----IYSRE-HAERERLLREYHN 302
Query: 612 GKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPN--NVVLKPDVAELTPTG 669
+VV ++ R C+ EL
Sbjct: 303 TNYSVVDTD-------LIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRD 355
Query: 670 VRFQDGSYEQVDIILCCTGYT--NHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFIL 727
+ S E D ++ TGY H L ++ + T ++
Sbjct: 356 AGSGELSVETYDAVILATGYERQLHRQLLEPLAEYLGDHEIGRDYRLQTDERCKVAIYAQ 415
Query: 728 GVS 730
G S
Sbjct: 416 GFS 418
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 7e-06
Identities = 26/244 (10%), Positives = 54/244 (22%), Gaps = 56/244 (22%)
Query: 826 SYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRT------PEPFAGKQAVVVGSGQ 879
V+ P P+ + H Y + ++G GQ
Sbjct: 178 VRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQ 237
Query: 880 SGLDITLDIATTGKQA----VVVGSGQSGLD----------------------------- 906
S + +D+ + ++ S D
Sbjct: 238 SAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLL 297
Query: 907 ----ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKP----DVAELTPTGVRF------ 952
T + + + + + A T G+
Sbjct: 298 REYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAG 357
Query: 953 -QDGSYEQVDIILCCTGY--SNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGV 1009
+ S E D ++ TGY H L ++ + T ++ G
Sbjct: 358 SGELSVETYDAVILATGYERQLHRQLLEPLAEYLGDHEIGRDYRLQTDERCKVAIYAQGF 417
Query: 1010 PRHT 1013
+ +
Sbjct: 418 SQAS 421
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 2e-06
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 3 QDKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTG 57
+DK S + VIG G GL A +L G T FE GG + +
Sbjct: 7 EDKHSSAKRVAVIGAGVSGLAAAYKLKIH--GLNVTVFEAEGKAGG-KLRSVSQD 58
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 30/125 (24%)
Query: 1 MVQDKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRD- 59
M SP L VIG G G+ + + G E ++VGGTW
Sbjct: 1 MSNRAKSPALDAVVIGAGVTGIYQAFLINQA--GMKVLGIEAGEDVGGTW-------YWN 51
Query: 60 QY-GL----PVHSSMYKSLKTNLPKEIMELSGYHHKGHPDKS--YIAANDVLEYLNDFAD 112
+Y G ++ Y +LK +P+ + S + + ++L Y+N AD
Sbjct: 52 RYPGCRLDTESYAYGYFALKGIIPE-------------WEWSENFASQPEMLRYVNRAAD 98
Query: 113 NFNLR 117
++R
Sbjct: 99 AMDVR 103
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 8e-04
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 500 SNPVYPDFKGKDVCQIPIMHS----HEYRTPEP---FAGKRAVVVGSGPSG 543
S PD KG D + HS + F GKR V+G+G +G
Sbjct: 147 SASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATG 197
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 6e-06
Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 26/121 (21%)
Query: 3 QDKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRD-QY 61
+ + + + V+G G GL A RL E G + E +VGG W +Y
Sbjct: 10 RRQPPEEVDVLVVGAGFSGLYALYRLRE--LGRSVHVIETAGDVGGVW-------YWNRY 60
Query: 62 -GL----PVHSSMYKSLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNL 116
G Y S + +E + + Y + ++L Y+N AD F+L
Sbjct: 61 PGARCDIESIEYCY-SFSEEVLQE----------WNWTERYASQPEILRYINFVADKFDL 109
Query: 117 R 117
R
Sbjct: 110 R 110
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 9e-04
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 300 PN----NVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGY 336
N + + P I +TP GVR + YE +D ++ TG+
Sbjct: 351 DNVHLVDTLSAP-IETITPRGVRTSEREYE-LDSLVLATGF 389
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 7e-06
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTG 57
+ ++GGG GL A T E + +GG V T +
Sbjct: 6 RLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGG-KVATYRED 51
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTG 57
+ V+GGG GL A+ L+ E ++ +GG W+ + +
Sbjct: 4 TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGG-WIRSVRGP 49
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 31/123 (25%)
Query: 4 DKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRD-QYG 62
+T+ T+ VIG G GG+ A +L G T F++ D GGTW +Y
Sbjct: 3 AQTTHTVDAVVIGAGFGGIYAVHKLHHEL-GLTTVGFDKADGPGGTW-------YWNRY- 53
Query: 63 LP-----VHSSMYK-SLKTNLPKEIMELSGYHHKGHPD--KSYIAANDVLEYLNDFADNF 114
P S +Y+ S +L +E +YI ++LEYL D D F
Sbjct: 54 -PGALSDTESHLYRFSFDRDLLQE------------STWKTTYITQPEILEYLEDVVDRF 100
Query: 115 NLR 117
+LR
Sbjct: 101 DLR 103
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 6 TSPTLHIGVIGGGAGGLTA----TKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTG 57
+ H+ +IGGG GL A K + E T E + VGG + T +
Sbjct: 2 SDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG-KIQTVKKD 56
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 3e-05
Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 28/119 (23%)
Query: 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRD-QYGLP 64
+ + + V+G G GL A R G T FE VGG W +Y P
Sbjct: 18 GTTSYDVVVVGAGIAGLYAIHRFRS--QGLTVRAFEAASGVGGVW-------YWNRY--P 66
Query: 65 -----VHSSMYK-SLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLR 117
V S Y S L +E + + Y ++L YL AD F+LR
Sbjct: 67 GARCDVESIDYSYSFSPELEQE----------WNWSEKYATQPEILAYLEHVADRFDLR 115
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 7e-05
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTG 57
+ +++ V+GGG GL L G E + +GG V T
Sbjct: 13 RTTGMNVAVVGGGISGLAVAHHLRS--RGTDAVLLESSARLGG-AVGTHALA 61
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1129 | |||
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 100.0 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 100.0 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 100.0 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 100.0 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 99.97 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 99.97 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 99.96 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 99.96 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 99.96 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 99.95 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 99.95 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 99.94 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 99.92 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 99.91 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 99.91 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 99.91 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 99.9 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 99.89 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 99.89 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 99.88 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.88 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 99.88 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 99.88 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 99.88 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 99.88 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 99.88 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.88 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 99.87 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 99.87 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 99.87 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 99.87 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 99.87 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.87 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 99.87 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 99.87 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 99.87 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 99.87 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 99.86 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 99.86 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 99.86 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 99.86 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 99.86 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 99.86 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 99.86 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 99.86 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 99.85 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 99.85 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 99.85 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 99.85 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 99.85 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 99.85 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 99.85 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 99.85 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 99.85 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 99.85 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 99.85 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 99.85 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 99.85 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 99.84 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 99.84 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 99.84 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.84 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 99.84 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 99.84 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 99.84 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 99.84 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 99.84 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 99.84 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 99.84 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 99.83 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 99.83 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 99.83 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 99.83 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 99.83 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 99.83 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 99.83 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 99.83 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 99.83 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 99.82 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 99.82 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 99.82 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 99.82 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 99.82 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 99.82 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 99.82 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 99.82 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 99.82 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 99.82 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 99.82 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 99.81 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 99.81 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 99.81 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 99.81 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 99.81 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 99.8 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 99.8 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 99.8 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 99.8 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 99.8 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 99.8 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 99.8 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 99.79 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 99.79 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 99.78 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 99.78 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.78 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 99.78 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 99.78 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 99.78 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 99.78 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 99.78 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 99.78 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 99.78 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 99.78 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 99.78 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 99.78 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 99.77 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 99.77 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 99.77 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 99.77 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 99.77 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 99.77 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 99.77 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 99.77 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 99.77 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 99.77 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 99.77 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 99.77 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 99.77 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 99.77 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 99.77 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 99.77 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 99.76 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 99.76 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 99.76 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 99.76 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 99.76 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 99.76 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 99.76 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 99.76 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 99.76 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.76 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.75 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.75 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 99.75 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 99.75 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 99.75 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 99.75 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 99.75 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 99.75 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 99.75 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.74 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.74 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 99.74 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 99.74 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 99.73 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 99.73 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.73 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 99.72 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 99.72 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 99.72 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 99.71 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.71 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 99.71 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 99.7 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 99.7 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.7 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.68 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 99.68 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.67 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.67 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.66 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 99.65 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 99.65 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 99.63 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 99.63 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.63 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 99.61 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.61 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 99.58 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.56 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.54 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.46 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.41 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 99.32 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.32 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.06 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 98.96 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 98.81 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 98.79 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 98.71 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 98.6 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.59 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 98.55 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 98.5 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 98.49 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 98.48 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.47 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 98.46 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.46 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 98.46 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.41 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.39 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.38 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 98.34 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 98.34 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 98.34 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.31 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 98.31 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.31 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 98.29 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.28 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.28 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.28 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 98.27 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 98.27 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 98.26 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.25 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 98.25 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.25 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.25 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 98.24 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 98.24 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.22 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 98.21 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 98.19 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.18 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 98.18 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.16 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.09 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 98.09 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.08 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.07 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 98.06 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 98.05 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 98.05 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.04 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 98.03 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.01 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 98.0 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 97.97 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 97.97 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 97.87 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 97.86 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 97.85 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 97.84 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 97.82 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 97.81 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 97.79 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 97.79 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 97.75 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 97.72 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 97.69 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 97.68 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 97.67 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 97.66 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 97.66 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 97.66 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 97.64 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 97.64 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 97.64 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 97.61 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 97.61 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 97.59 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 97.59 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 97.58 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 97.58 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 97.57 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 97.52 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 97.51 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 97.5 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 97.49 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 97.49 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 97.49 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 97.47 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 97.45 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 97.44 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 97.39 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 97.39 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 97.38 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 97.31 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 97.3 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 97.22 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 97.22 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 97.18 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 97.15 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 97.14 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 97.13 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 97.11 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 97.09 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 96.92 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 96.87 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 96.82 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 96.78 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 96.66 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 96.62 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 96.6 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 96.51 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 96.37 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 96.37 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 96.33 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 96.32 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 96.27 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 96.24 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 96.16 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 96.1 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 95.98 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 95.93 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 95.89 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 95.89 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 95.88 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 95.85 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 95.84 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.77 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 95.74 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 95.69 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 95.64 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 95.6 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 95.54 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 95.47 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 95.46 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 95.4 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 95.39 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 95.36 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 95.36 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 95.36 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 95.3 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 95.3 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 95.29 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 95.29 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 95.28 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 95.19 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 95.13 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 95.09 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 95.04 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 94.94 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 94.93 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 94.89 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 94.82 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 94.78 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 94.71 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 94.71 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 94.67 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 94.65 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 94.64 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 94.61 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 94.57 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 94.49 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 94.23 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 94.23 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 94.17 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 93.96 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 93.81 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 93.73 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 93.66 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 93.64 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 93.57 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 93.54 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 93.34 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 93.32 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 93.07 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 92.94 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 92.87 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 92.87 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 92.82 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 92.68 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 92.62 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 92.62 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 92.59 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 92.47 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 92.47 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 92.35 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 92.26 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 92.22 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 92.16 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 92.09 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 92.04 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 91.97 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 91.97 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 91.89 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 91.84 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.74 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 91.68 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 91.67 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 91.61 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 91.58 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 91.58 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 91.34 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 91.21 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 91.14 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 91.07 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 91.07 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 91.05 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 91.04 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 91.03 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 91.0 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 90.93 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 90.82 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 90.8 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 90.75 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 90.45 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 90.39 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 90.34 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 90.25 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 90.24 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 90.13 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 90.02 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 89.56 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 89.55 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 89.35 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 89.33 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 89.3 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 89.26 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 89.26 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 89.02 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 89.0 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 88.79 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 88.79 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 88.78 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 88.55 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 88.53 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 88.11 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 88.09 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 87.92 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 87.88 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 87.65 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 87.61 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 87.59 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 87.32 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 87.3 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 87.0 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 86.89 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 86.73 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 86.63 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 86.6 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 86.33 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 86.32 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 86.16 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 85.71 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 85.66 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 85.47 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 85.4 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 85.24 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 85.24 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 85.19 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 84.89 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 84.75 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 84.66 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 84.62 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 84.53 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 84.44 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 84.36 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 84.08 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 83.96 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 83.86 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 83.83 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 83.7 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 83.64 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 83.28 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 83.07 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 82.86 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 82.81 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 82.68 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 82.45 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 82.41 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 82.39 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 82.22 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 82.21 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 82.18 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 82.13 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 81.98 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 81.92 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 81.78 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 81.71 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 81.27 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 81.25 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 80.97 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 80.86 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 80.73 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 80.67 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 80.66 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 80.64 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 80.62 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 80.51 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 80.51 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 80.5 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 80.47 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 80.45 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 80.27 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 80.14 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 80.1 |
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-45 Score=430.01 Aligned_cols=354 Identities=27% Similarity=0.455 Sum_probs=302.0
Q ss_pred CccccccCCchhhHHHHHHh---hCCCcc---eEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTE---AGNGFT---CTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMEL 814 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~---~g~~~~---v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~ 814 (1129)
+++|||+|++|+++|+.|++ .| ++ |+|||+++.+||+|.+...+||.++|+|.++.+|+.+.+|.++..+.|
T Consensus 4 ~V~IIGaG~aGl~aA~~L~~~~~~G--~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~ 81 (464)
T 2xve_A 4 RIAILGAGPSGMAQLRAFQSAQEKG--AEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEF 81 (464)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHTT--CCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCB
T ss_pred cEEEECccHHHHHHHHHHHhhhhcC--CCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhccc
Confidence 68999999999999999999 88 88 999999999999999998899988899999999999999999999888
Q ss_pred cCCCCCCC---CCCCCCChhhh--------------------------------------------------------hh
Q psy12350 815 CGYGHKGN---ADKSYIGAKDV--------------------------------------------------------LE 835 (1129)
Q Consensus 815 ~~~~~~~~---~~~~~~~~~~v--------------------------------------------------------~~ 835 (1129)
++++++.. +...|+++.++ +.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvA 161 (464)
T 2xve_A 82 ADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCC 161 (464)
T ss_dssp TTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred CCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEEC
Confidence 88765321 00111111100 01
Q ss_pred cc--CCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhc
Q psy12350 836 NY--NHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIAT 913 (1129)
Q Consensus 836 ~~--~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~ 913 (1129)
+| +.|++|++||++.|.|.++|+++|+++..+.+|+|+|||+|.||+|+|.+|++.|++|+++.+.+..+..
T Consensus 162 tG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~------ 235 (464)
T 2xve_A 162 TGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGY------ 235 (464)
T ss_dssp CCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCC------
T ss_pred CCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCC------
Confidence 56 8999999999999999999999999988889999999999999999999999999999999875432211
Q ss_pred cccEEEEecCCccccccCCCCCeEEcCCeeEEeCCcEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCC-ccccc
Q psy12350 914 RASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNK-NVQPL 992 (1129)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~i~~v~~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~-~~~~l 992 (1129)
.++.+|++++.|+++++++|+|.||+++++|.||+||||+++++||.+++|+.++++ ++.++
T Consensus 236 -----------------~~~~~V~~~~~V~~i~~~~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~v~~~ 298 (464)
T 2xve_A 236 -----------------KWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNL 298 (464)
T ss_dssp -----------------CCCTTEEECSCEEEECSSEEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSCCSSE
T ss_pred -----------------CCCCceEEcCCeEEEeCCEEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCCCcccccc
Confidence 123478888889999999999999999999999999999999999987678888776 55579
Q ss_pred ccceeecCCCCcEEEccccccchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhcCC--CCCCceeccCCc
Q psy12350 993 YKHTINIEHPTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQ--NPNTFHIIGHRS 1070 (1129)
Q Consensus 993 y~~~~~~~~p~l~~iG~~~~~~~~~~~e~qa~~~a~~l~g~~~lp~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 1070 (1129)
|++++.++.|||||+|++.....++.++.||+|+|++|.|+..||+.++|+++++++.+ + ..++ ..+++|. +
T Consensus 299 ~~~~~~t~~p~i~aiGd~~~~~~~~~a~~qa~~~a~~l~G~~~lP~~~~m~~~~~~~~~-~-~~~~~~~~~~~~~----~ 372 (464)
T 2xve_A 299 YKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWRE-K-ELTLVTAEEMYTY----Q 372 (464)
T ss_dssp ETTTEESSSTTEEECSCSCCSSCHHHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHHH-H-HHTCCSHHHHHHH----H
T ss_pred cceEecCCCCCEEEEeCcccccchHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH-H-hhccCCCCCcccc----H
Confidence 99999999999999999987778999999999999999999999999999999988766 3 3333 2344442 5
Q ss_pred HHHHHHHHHhcCCCCCC-cHHHHHHHHchhhhhhhcCCCCCCCceeecCCCceeeec
Q psy12350 1071 ENFLNSIISMMRDESPL-PPVLLKVYFDSYGQLTEDFIGFRNNKYQIFNDQAYVRTG 1126 (1129)
Q Consensus 1071 ~~y~d~l~~~~g~~~~~-p~~~~~~~~~~~~~~~~~~~~y~~~~Yr~~~~~~~~~~~ 1126 (1129)
..|+|+|++++|++ ++ ++++.++|..+...+.+++..||+.+|+++.++.|....
T Consensus 373 ~~Y~~~l~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 428 (464)
T 2xve_A 373 GDYIQNLIDMTDYP-SFDIPATNKTFLEWKHHKKENIMTFRDHSYRSLMTGTMAPKH 428 (464)
T ss_dssp HHHHHHHHTTSSSC-CCCHHHHHHHHHHHHHHHHHCTTTGGGCCCBCTTTCCBCCCC
T ss_pred HHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHhchhhhcccceeEecCceeeccC
Confidence 78999999999999 55 788999999999999999999999999999999988764
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=400.50 Aligned_cols=342 Identities=23% Similarity=0.385 Sum_probs=276.4
Q ss_pred ceEEEEcCChHHHHHHHHhhc---CCCCce---EEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTE---PGSGFT---CTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIME 83 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~---~~~~~~---v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~ 83 (1129)
++|+|||||||||+||+.|++ .| ++ |+|||+++.+||+|.+.+..+|+++|.|..+.+|+.+++++++..++
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G--~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~ 80 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKG--AEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLE 80 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTT--CCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTC
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcC--CCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcc
Confidence 699999999999999999998 65 67 99999999999999998888888888899999999999999999999
Q ss_pred cCCCCCCCC---CCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEeccee
Q psy12350 84 LSGYHHKGH---PDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQV 160 (1129)
Q Consensus 84 ~~d~~~~~~---~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 160 (1129)
|++||++.. +.+.++++.++.+|++++++++++..+++++++|+.|++.. ....|.+++.+...+......||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~-~~~~~~V~~~~~~~g~~~~~~~d--- 156 (464)
T 2xve_A 81 FADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNE-DSQTFTVTVQDHTTDTIYSEEFD--- 156 (464)
T ss_dssp BTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEET-TTTEEEEEEEETTTTEEEEEEES---
T ss_pred cCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcC-CCCcEEEEEEEcCCCceEEEEcC---
Confidence 999987531 23568899999999999999999877799999999998632 11257776654323333557899
Q ss_pred eeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccc
Q psy12350 161 RFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCS 240 (1129)
Q Consensus 161 ~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 240 (1129)
+||+|||+++.|++|++||.. .+.|+ ..++..| ..+
T Consensus 157 --~VVvAtG~~s~p~~p~ipG~~--~~~g~-------------~~hs~~~---------------------------~~~ 192 (464)
T 2xve_A 157 --YVVCCTGHFSTPYVPEFEGFE--KFGGR-------------ILHAHDF---------------------------RDA 192 (464)
T ss_dssp --EEEECCCSSSSBCCCCCBTTT--TCCSE-------------EEEGGGC---------------------------CCG
T ss_pred --EEEECCCCCCCCccCCCCCcc--cCCce-------------EEehhhh---------------------------CCH
Confidence 999999999999999998732 22221 1112111 222
Q ss_pred cccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCCCeEEcCCceEEcCCceEEc
Q psy12350 241 EDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPNNVVKKPDIAELTPTGVRFQ 320 (1129)
Q Consensus 241 ~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~~i~~~~~v~~~~~~~v~~~ 320 (1129)
..+ .+++++| ||+|+||+|+|..|++.|++|++++|++.+++..++.+|...+.|+++++++|+|+
T Consensus 193 ~~~---~~k~VvV-----------VG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~~~~~~V~~~~~V~~i~~~~V~~~ 258 (464)
T 2xve_A 193 LEF---KDKTVLL-----------VGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFA 258 (464)
T ss_dssp GGG---TTSEEEE-----------ECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCCCCCTTEEECSCEEEECSSEEEET
T ss_pred hHc---CCCEEEE-----------EcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCCCCCCceEEcCCeEEEeCCEEEEC
Confidence 222 2444444 79999999999999999999999999988776666778888899999998899999
Q ss_pred CCCEeecCEEEEcccccccCCCCCCCCCeEeecC-cccccccccccCCCCCeEEeccccc---ccccccccceeeehhhc
Q psy12350 321 DGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNK-NVQPLYKHLINIEHPSMCIIGYTYR---YPFLHESCGIKVVNKNV 396 (1129)
Q Consensus 321 dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~-~~~~l~~~~~~~~~p~l~~~G~~~~---~~~~~~~~~~~~~a~~~ 396 (1129)
||+++++|.||+||||+++++||+++.++.++++ .+.++|++++.+++|+|||+|++.. ++.++ .||+++|+++
T Consensus 259 dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~v~~~~~~~~~t~~p~i~aiGd~~~~~~~~~a~--~qa~~~a~~l 336 (464)
T 2xve_A 259 DGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFD--AQAWYARDVI 336 (464)
T ss_dssp TSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSCCSSEETTTEESSSTTEEECSCSCCSSCHHHHH--HHHHHHHHHH
T ss_pred CCCEEeCCEEEECCCCCCCCCCcCcccccccCCCcccccccceEecCCCCCEEEEeCcccccchHHHH--HHHHHHHHHH
Confidence 9999999999999999999999996677777766 4468999999999999999999853 24444 8876666665
Q ss_pred ccccccccccccccceecCCCcccchhhhhccccc
Q psy12350 397 QPLYKHLINIEHPSMCIIGIPVESCGIKVVNKNVQ 431 (1129)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 431 (1129)
. |+++| |++++|..|+.++..
T Consensus 337 ~----G~~~l----------P~~~~m~~~~~~~~~ 357 (464)
T 2xve_A 337 M----GRLPL----------PSKEEMKADSMAWRE 357 (464)
T ss_dssp T----TSSCC----------CCHHHHHHHHHHHHH
T ss_pred c----CCCCC----------cCHHHHHHHHHHHHH
Confidence 5 66666 999999999988765
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=372.79 Aligned_cols=340 Identities=20% Similarity=0.343 Sum_probs=258.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCC-------------------CccCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGL-------------------PVHSS 68 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~-------------------~~~~~ 68 (1129)
..++|+|||||||||+||+.|++.|...+|+||||++.+||+|.+....... ... ...+.
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~-~~ip~~~~~~~~~~~~~g~~~~~~~~~ 83 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNK-LPVPSTNPILTTEPIVGPAALPVYPSP 83 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSC-CCSSBCCTTCCCCCBCCSSSCCBCCCC
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcc-cccccccccccccccccccccCCccCc
Confidence 3589999999999999999999954222999999999999999986432210 000 11367
Q ss_pred ccccccccCCccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEecccc
Q psy12350 69 MYKSLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPR 148 (1129)
Q Consensus 69 ~y~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~ 148 (1129)
+|+.+++++++..+.|+++|++.. ...|+++.++.+|+++++++++. .++++++|++|++. .+.|.+++.+...
T Consensus 84 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~--~i~~~t~V~~v~~~---~~~~~V~~~~~~~ 157 (447)
T 2gv8_A 84 LYRDLQTNTPIELMGYCDQSFKPQ-TLQFPHRHTIQEYQRIYAQPLLP--FIKLATDVLDIEKK---DGSWVVTYKGTKA 157 (447)
T ss_dssp CCTTCBCSSCHHHHSCTTCCCCTT-CCSSCBHHHHHHHHHHHHGGGGG--GEECSEEEEEEEEE---TTEEEEEEEESST
T ss_pred hhhhhccCCCHHHhccCCCCCCCC-CCCCCCHHHHHHHHHHHHHHhhC--eEEeCCEEEEEEeC---CCeEEEEEeecCC
Confidence 899999999999999999998764 45788999999999999998854 79999999999763 2447776654222
Q ss_pred Cc-cceEEecceeeeEEEEecccCCCCCccccccchhh--hcccccccCCCCCcccccccccchhhhcccccccCCCCCC
Q psy12350 149 DT-VGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQ--DVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVP 225 (1129)
Q Consensus 149 ~~-~~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 225 (1129)
+. .....|| +||+|||+++.|++|++||.... .++|. ..++..
T Consensus 158 G~~~~~~~~d-----~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~-------------v~~~~~---------------- 203 (447)
T 2gv8_A 158 GSPISKDIFD-----AVSICNGHYEVPYIPNIKGLDEYAKAVPGS-------------VLHSSL---------------- 203 (447)
T ss_dssp TCCEEEEEES-----EEEECCCSSSSBCBCCCBTHHHHHHHSTTS-------------EEEGGG----------------
T ss_pred CCeeEEEEeC-----EEEECCCCCCCCCCCCCCChhhhhccCCcc-------------EEEecc----------------
Confidence 32 2357799 99999999999999999884321 11121 011111
Q ss_pred ccchhcccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccE-EEEccccCCcccccCCCCeE
Q psy12350 226 PVLLKIYFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATT-VFLSHHSEHVKKLRFPNNVV 304 (1129)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~-V~lv~r~~~~~~~~~~~~i~ 304 (1129)
+..++.+ .+++++| ||+|+||+|+|..|++.+++ |++++|++.++ ...+|.
T Consensus 204 -----------~~~~~~~---~~k~VvV-----------vG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~l---~~~~i~ 255 (447)
T 2gv8_A 204 -----------FREPELF---VGESVLV-----------VGGASSANDLVRHLTPVAKHPIYQSLLGGGDI---QNESLQ 255 (447)
T ss_dssp -----------CCCGGGG---TTCCEEE-----------ECSSHHHHHHHHHHTTTSCSSEEEECTTCCSC---BCSSEE
T ss_pred -----------cCChhhc---CCCEEEE-----------EccCcCHHHHHHHHHHHhCCcEEEEeCCCCcC---CCCCeE
Confidence 1223332 2455555 79999999999999999999 99999987662 234677
Q ss_pred EcCCceEEc--CCceEEcCCCE-eecCEEEEcccccccCCC-----CCC-CCCeEeecCcccccccccccCCCCCeEEec
Q psy12350 305 KKPDIAELT--PTGVRFQDGSY-EQVDIILYCTGYTYRYPF-----LHE-SCGIKVVNKNVQPLYKHLINIEHPSMCIIG 375 (1129)
Q Consensus 305 ~~~~v~~~~--~~~v~~~dg~~-~~~D~VI~atG~~~~~~~-----l~~-~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G 375 (1129)
..+.|++++ +++|+|+||++ +++|.||+||||++++|| |+. ..++.++++...++|+++|++++|+|+|+|
T Consensus 256 ~~~~v~~~~~~~~~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G 335 (447)
T 2gv8_A 256 QVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVG 335 (447)
T ss_dssp EECCEEEEETTTTEEEETTTEEECCCSEEEECCCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESS
T ss_pred EecCeEEEecCCCEEEECCCCEeccCCEEEECCCCCcCCCCCcccccccccCceecCCCcccccccccccCCCCcEEEEe
Confidence 889999994 45699999987 699999999999999999 875 234566666667899999999999999999
Q ss_pred cccc---ccccccccceeeehhhcccccccccccccccceecCCCcccchhhhhcccccc
Q psy12350 376 YTYR---YPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGIPVESCGIKVVNKNVQP 432 (1129)
Q Consensus 376 ~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 432 (1129)
++.. +|.++ .||+++|+++. |+++| |++++|++++.++++.
T Consensus 336 ~~~~~~~~~~a~--~qa~~~a~~~~----g~~~l----------p~~~~m~~~~~~~~~~ 379 (447)
T 2gv8_A 336 LALHVVPFPTSQ--AQAAFLARVWS----GRLKL----------PSKEEQLKWQDELMFS 379 (447)
T ss_dssp CCBSSCHHHHHH--HHHHHHHHHHT----TSSCC----------CCHHHHHHHHHHHHHH
T ss_pred ccccccCchHHH--HHHHHHHHHHc----CCCCC----------cCHHHHHHHHHHHHHH
Confidence 8863 34455 88877777665 56666 9999999999877653
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=347.62 Aligned_cols=313 Identities=25% Similarity=0.455 Sum_probs=246.7
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCc--ceEEEcccCCcCcccccCCCCCCCCCCCCc-------------------cc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGF--TCTTFEQADNIGGTWLYTEHIGCDQYGLPV-------------------HS 797 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~--~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~-------------------~~ 797 (1129)
.-+++|||+|++|+++|+.|++.| . +|+|||+++.+||+|.+...+...+ ++|. .+
T Consensus 6 ~~dV~IIGaG~aGl~aA~~L~~~G--~~~~V~v~E~~~~~GG~~~~~~~~~~~~-~ip~~~~~~~~~~~~~g~~~~~~~~ 82 (447)
T 2gv8_A 6 IRKIAIIGAGPSGLVTAKALLAEK--AFDQVTLFERRGSPGGVWNYTSTLSNKL-PVPSTNPILTTEPIVGPAALPVYPS 82 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTT--CCSEEEEECSSSSSSTTCSCCSCCCSCC-CSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred CCEEEEECccHHHHHHHHHHHhcC--CCCCeEEEecCCCCCCeecCCCCCCccc-ccccccccccccccccccccCCccC
Confidence 347899999999999999999999 7 9999999999999999764322110 1211 25
Q ss_pred cccCccccccccccccccCCCCCCCCCCCCCChhhhh-------------------------------------------
Q psy12350 798 SMYKSLKTNLPKDLMELCGYGHKGNADKSYIGAKDVL------------------------------------------- 834 (1129)
Q Consensus 798 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~------------------------------------------- 834 (1129)
.+|..+.++.++..+.|++++++.. ...|+.+.++.
T Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~ 161 (447)
T 2gv8_A 83 PLYRDLQTNTPIELMGYCDQSFKPQ-TLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPI 161 (447)
T ss_dssp CCCTTCBCSSCHHHHSCTTCCCCTT-CCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCE
T ss_pred chhhhhccCCCHHHhccCCCCCCCC-CCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCee
Confidence 6788888888888888887776543 22222221111
Q ss_pred ----------hccC--CCCCCCCCCCCCC----CCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCE-EEE
Q psy12350 835 ----------ENYN--HPIYPEFKGKDMC----QIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQ-AVV 897 (1129)
Q Consensus 835 ----------~~~~--~P~~P~i~G~~~f----~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~-V~v 897 (1129)
.+|. .|++|++||+++| .|.++|+++|+++..+.+|+|+|||+|.||+|+|.+|++.+++ |++
T Consensus 162 ~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l 241 (447)
T 2gv8_A 162 SKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQ 241 (447)
T ss_dssp EEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEE
T ss_pred EEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHHHHhCCcEEE
Confidence 1444 8999999998764 6889999999998888999999999999999999999999999 999
Q ss_pred EecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCCeeEEe--CCcEEecCCcE-eeccEEEEccCccCcCC
Q psy12350 898 VGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELT--PTGVRFQDGSY-EQVDIILCCTGYSNHYP 974 (1129)
Q Consensus 898 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~i~~v~--~~~V~~~dG~~-~~~D~VI~aTG~~~~~~ 974 (1129)
+.+++.. +. ..+|.+.+.|+++. +++|+|.||++ +++|.||+||||+++++
T Consensus 242 ~~r~~~~---------------l~-----------~~~i~~~~~v~~~~~~~~~v~~~dG~~~~~~D~vi~atG~~~~~~ 295 (447)
T 2gv8_A 242 SLLGGGD---------------IQ-----------NESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVP 295 (447)
T ss_dssp ECTTCCS---------------CB-----------CSSEEEECCEEEEETTTTEEEETTTEEECCCSEEEECCCBCCCCC
T ss_pred EeCCCCc---------------CC-----------CCCeEEecCeEEEecCCCEEEECCCCEeccCCEEEECCCCCcCCC
Confidence 9885422 11 22677777799994 45799999987 69999999999999999
Q ss_pred C-----CCC-CCCeeecCCcccccccceeecCCCCcEEEccccccchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q psy12350 975 F-----LHE-SCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQ 1048 (1129)
Q Consensus 975 f-----l~~-~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~~~~~~e~qa~~~a~~l~g~~~lp~~~~~~~~~~~ 1048 (1129)
| |+. ..++..++....++|+++|.+++|+|||+|++.....++.++.||+|+|++|.|+.+||+.++|++++++
T Consensus 296 ~l~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~~~~~a~~qa~~~a~~~~g~~~lp~~~~m~~~~~~ 375 (447)
T 2gv8_A 296 FPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDE 375 (447)
T ss_dssp CHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSSCHHHHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHH
T ss_pred CCcccccccccCceecCCCcccccccccccCCCCcEEEEeccccccCchHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH
Confidence 9 875 2245555555567899999999999999999987778999999999999999999999999999998887
Q ss_pred HHHHHHhcCCCCCCceecc-CCcHHHHHHHHHhcCCC
Q psy12350 1049 EVLAHLNEGQNPNTFHIIG-HRSENFLNSIISMMRDE 1084 (1129)
Q Consensus 1049 ~~~~~~~~~~~~~~~~~~~-~~~~~y~d~l~~~~g~~ 1084 (1129)
+.+.+ .+ ..+.+|.+. .++..|+|+|++.++..
T Consensus 376 ~~~~~--~~-~~~~~~~~~~~~~~~y~~~l~~~~~~~ 409 (447)
T 2gv8_A 376 LMFSL--SG-ANNMYHSLDYPKDATYINKLHDWCKQA 409 (447)
T ss_dssp HHHHH--TT-CGGGTTBCTTTHHHHHHHHHHHHHHTC
T ss_pred HHHHh--cC-CCcceeecCCccHHHHHHHHHHHhCcc
Confidence 76542 12 223446664 56789999999988764
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=319.09 Aligned_cols=352 Identities=18% Similarity=0.232 Sum_probs=242.5
Q ss_pred cCccccccCCchhhHHHHHH-hhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCcccc-------cccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLT-EAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKT-------NLPK-- 809 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~-~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~-------~~~~-- 809 (1129)
-+++|||+|++|+++|..|+ +.| .+|+|+|+++.+||+|..+.||||.+ ++ .+..|..... ..+.
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G--~~v~viE~~~~~GGtw~~~~ypg~~~-d~--~s~~~~~~~~~~~~~~~~~~~~~ 83 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELG--LTTVGFDKADGPGGTWYWNRYPGALS-DT--ESHLYRFSFDRDLLQESTWKTTY 83 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC--CCEEEEESSSSSCTHHHHCCCTTCEE-EE--EGGGSSCCSCHHHHHHCCCSBSE
T ss_pred CCEEEECcCHHHHHHHHHHHHcCC--CCEEEEECCCCCCCcccccCCCCcee-cC--CcceeeeccccccccCCCCcccC
Confidence 47899999999999999999 888 89999999999999999999999854 22 2223322110 0000
Q ss_pred ----c--------ccccc---CCC---------CCCC---C------CCCCCChhhhhhcc--CCCCCCCCCCCCCCCCc
Q psy12350 810 ----D--------LMELC---GYG---------HKGN---A------DKSYIGAKDVLENY--NHPIYPEFKGKDMCQIP 854 (1129)
Q Consensus 810 ----~--------~~~~~---~~~---------~~~~---~------~~~~~~~~~v~~~~--~~P~~P~i~G~~~f~g~ 854 (1129)
+ ...+. ... +..+ | ...+.....|..+| +.|++|++||+++|+|.
T Consensus 84 ~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~ 163 (540)
T 3gwf_A 84 ITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGE 163 (540)
T ss_dssp EEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCSE
T ss_pred CCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCCC
Confidence 0 00000 000 0000 0 00011111122266 79999999999999999
Q ss_pred EEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCC-ccc-----hhh----h-------------
Q psy12350 855 ILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSG-LDI-----TLD----I------------- 911 (1129)
Q Consensus 855 ~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~-~~~-----~~~----~------------- 911 (1129)
.+|+..+.+..++.+|+|+|||+|.||+|+|.+|++.+++||++++.+.. ++. ... +
T Consensus 164 ~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~~~~~~ 243 (540)
T 3gwf_A 164 TIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAKN 243 (540)
T ss_dssp EEEGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHHHHHHT
T ss_pred EEEeecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHHHHHHHh
Confidence 99999999888899999999999999999999999999999999887652 110 000 0
Q ss_pred --------------------------------------------------------------------------------
Q psy12350 912 -------------------------------------------------------------------------------- 911 (1129)
Q Consensus 912 -------------------------------------------------------------------------------- 911 (1129)
T Consensus 244 ~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l~P~ 323 (540)
T 3gwf_A 244 SAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMPK 323 (540)
T ss_dssp SSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHHCCC
T ss_pred ccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCC
Confidence
Q ss_pred hccccEEEEecCCccccccCCCCCeEEc---CC-eeEEeCCcEEecCCcEeeccEEEEccCccCcCCCCCC-----CCCe
Q psy12350 912 ATRASTVFLSHHSERVTSLCLPNNVVLK---PD-VAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHE-----SCGI 982 (1129)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~-i~~v~~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~-----~~g~ 982 (1129)
...|++..++..+.+.++ .++|+++ .. |+++++++|+++||+++++|+||+||||+++..++.. ..|+
T Consensus 324 ~~g~kR~~~~~~y~~~l~---~~nV~lv~~~~~~I~~it~~gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~~~i~g~~G~ 400 (540)
T 3gwf_A 324 GLFAKRPLCDSGYYEVYN---RPNVEAVAIKENPIREVTAKGVVTEDGVLHELDVLVFATGFDAVDGNYRRIEIRGRDGL 400 (540)
T ss_dssp SCCCSSCEEESSTGGGGG---STTEEEEETTTSCEEEECSSEEEETTCCEEECSEEEECCCBSCSSHHHHTSEEECGGGC
T ss_pred CCCccccCCCccHHHHhc---CCCEEEEeCCCCCccEEecCeEEcCCCCEEECCEEEECCccCccccCcCcceEECCCCc
Confidence 112344444444433333 4589998 44 9999999999999999999999999999998644432 2345
Q ss_pred eecCCcc--cccccceeecCCCCcEEEccccc--cchhHHHHHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHHHHH
Q psy12350 983 KVVNKNV--QPLYKHTINIEHPTMFILGVPRH--TLLFNLFDLQVRLFQQLMQ-----GHITLPSKEEMLADTKQEVLAH 1053 (1129)
Q Consensus 983 ~~~~~~~--~~ly~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa~~~a~~l~-----g~~~lp~~~~~~~~~~~~~~~~ 1053 (1129)
.+++.|. ...|+++..+++||+|++.+|++ .+.+..+|.|++|++++|. |...+.++++++++|.++.+.+
T Consensus 401 ~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~s~~~~~e~q~~~i~~~i~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 480 (540)
T 3gwf_A 401 HINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTNLPPSIETQVEWISDTIGYAERNGVRAIEPTPEAEAEWTETCTEI 480 (540)
T ss_dssp BHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHH
T ss_pred CHHHhhccChhhccccccCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHHHHHHH
Confidence 5555442 35899999999999999977763 4678999999999999886 5556778888999999999887
Q ss_pred HhcCCCCCCceeccCCcHHHHHHHHHhcC---CCCCCcHHHHHHHHchhhhhhhcCCC
Q psy12350 1054 LNEGQNPNTFHIIGHRSENFLNSIISMMR---DESPLPPVLLKVYFDSYGQLTEDFIG 1108 (1129)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~y~d~l~~~~g---~~~~~p~~~~~~~~~~~~~~~~~~~~ 1108 (1129)
.+++. + . .|.+|+..- ..-| ....||+....++...+.+++++|..
T Consensus 481 ~~~t~----~---~-~~~swy~~~-~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~g 529 (540)
T 3gwf_A 481 ANATL----F---T-KGDSWIFGA-NIPGKKPSVLFYLGGLRNYRAVMAEVAADGYRG 529 (540)
T ss_dssp HTTSC----C-----------------------CCCBCSCHHHHHHHHHHHHHTTSTT
T ss_pred HhCCC----c---c-CCCcceeCC-CCCCCCceEeeCCCCHHHHHHHHhccchhcCCC
Confidence 76532 1 1 255655431 1112 22258888888888777777777653
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=318.71 Aligned_cols=351 Identities=19% Similarity=0.201 Sum_probs=247.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCcccc-------ccc----
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKT-------NLP---- 808 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~-------~~~---- 808 (1129)
-+++|||+|++|+.+|..|++.| .+|+|||+++.+||+|..+.||||.| ++| +..|..... ..+
T Consensus 22 ~dVvIIGaG~aGl~aA~~L~~~G--~~v~iiE~~~~~GGtw~~~~ypg~~~-dv~--s~~y~~~f~~~~~~~~~~~~~~~ 96 (549)
T 4ap3_A 22 YDVVVVGAGIAGLYAIHRFRSQG--LTVRAFEAASGVGGVWYWNRYPGARC-DVE--SIDYSYSFSPELEQEWNWSEKYA 96 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBC-SSC--TTTSSCCSCHHHHHHCCCSSSSC
T ss_pred CCEEEECchHHHHHHHHHHHhCC--CCEEEEeCCCCCCCccccCCCCCcee-CCC--chhcccccccccccCCCCccCCC
Confidence 47899999999999999999999 89999999999999999999999866 333 333332211 000
Q ss_pred --ccc--------cccc---CCCCC---------CC---C------CCCCCChhhhhhcc--CCCCCCCCCCCCCCCCcE
Q psy12350 809 --KDL--------MELC---GYGHK---------GN---A------DKSYIGAKDVLENY--NHPIYPEFKGKDMCQIPI 855 (1129)
Q Consensus 809 --~~~--------~~~~---~~~~~---------~~---~------~~~~~~~~~v~~~~--~~P~~P~i~G~~~f~g~~ 855 (1129)
.++ ..+. .+.+. .. | ...+.....|+.+| +.|++|++||+++|+|.+
T Consensus 97 ~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~ 176 (549)
T 4ap3_A 97 TQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDI 176 (549)
T ss_dssp BHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCCSEE
T ss_pred CHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCce
Confidence 000 0000 00000 00 0 00011111122277 899999999999999999
Q ss_pred EeeccCC-CCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCC-ccc--------------------------
Q psy12350 856 LHSRDYR-TPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSG-LDI-------------------------- 907 (1129)
Q Consensus 856 ~hs~~~~-~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~-~~~-------------------------- 907 (1129)
+|+..|. +..++.+|+|+|||+|.||+|+|.+|++.+++||++.+++.. ++.
T Consensus 177 ~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~~~~~~~~~~~l~~~~~~~~~~~r~ 256 (549)
T 4ap3_A 177 VHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVPLDDATRAEQKANYAERRRLSRE 256 (549)
T ss_dssp EEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC----CHHHHHHHHHTHHHHHHHHHH
T ss_pred EEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcCCCCCHHHHHHHHhccHHHHHHHHh
Confidence 9999999 678889999999999999999999999999999999887752 110
Q ss_pred ---------------------------------------------------------------------------hhh-h
Q psy12350 908 ---------------------------------------------------------------------------TLD-I 911 (1129)
Q Consensus 908 ---------------------------------------------------------------------------~~~-~ 911 (1129)
.|. +
T Consensus 257 ~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~l~P~~~ 336 (549)
T 4ap3_A 257 SGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFWEEKIRAVVDDPAVAELLTPKDH 336 (549)
T ss_dssp SSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHHHHSCSSC
T ss_pred hccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCC
Confidence 000 2
Q ss_pred hccccEEEEecCCccccccCCCCCeEEc---CC-eeEEeCCcEEecCCcEeeccEEEEccCccCcCCCCCC-----CCCe
Q psy12350 912 ATRASTVFLSHHSERVTSLCLPNNVVLK---PD-VAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHE-----SCGI 982 (1129)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~-i~~v~~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~-----~~g~ 982 (1129)
...+++...+..+.+.++ .++|+++ .. |+++++++|+++|| ++++|+||+||||+++..++.. ..|+
T Consensus 337 ~~~~kR~~~~~~y~~al~---~~~V~lvd~~~~~I~~it~~gv~~~dG-~~~~D~iI~ATGf~~~~~~~~~~~i~g~~G~ 412 (549)
T 4ap3_A 337 AIGAKRIVLDSGYYETYN---RDNVELVDLRSTPIVGMDETGIVTTGA-HYDLDMIVLATGFDAMTGSLDKLEIVGRGGR 412 (549)
T ss_dssp CBTTBCCEEESSTGGGGG---STTEEEEETTTSCEEEEETTEEEESSC-EEECSEEEECCCEEESSTTGGGSEEECGGGC
T ss_pred CCCccccCCCccHHHHhc---CCCEEEEeCCCCCceEEeCCcEEeCCC-ceecCEEEECCcccccccccCceeEECCCCc
Confidence 223344444444333333 4589998 54 99999999999999 9999999999999998645542 2245
Q ss_pred eecCCcc--cccccceeecCCCCcEEEccccc----cchhHHHHHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHHH
Q psy12350 983 KVVNKNV--QPLYKHTINIEHPTMFILGVPRH----TLLFNLFDLQVRLFQQLMQ-----GHITLPSKEEMLADTKQEVL 1051 (1129)
Q Consensus 983 ~~~~~~~--~~ly~~~~~~~~p~l~~iG~~~~----~~~~~~~e~qa~~~a~~l~-----g~~~lp~~~~~~~~~~~~~~ 1051 (1129)
.+++.|. ...|+++..+++||+|++.+|++ .+.+..+|.|++|++++|. |...+.++++++++|.++++
T Consensus 413 ~l~~~w~~~~~~y~g~~~~gfPN~f~~~Gp~~~~~~~s~~~~~e~~~~~i~~~i~~~~~~~~~~~~~~~~a~~~~~~~~~ 492 (549)
T 4ap3_A 413 TLKETWAAGPRTYLGLGIDGFPNFFNLTGPGSPSVLANMVLHSELHVDWVADAIAYLDARGAAGIEGTPEAVADWVEECR 492 (549)
T ss_dssp BHHHHTTTSCCCBTTTBCTTCTTEEETTCTTSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTEEEEEECHHHHHHHHHHHH
T ss_pred CHHHhhccchhhccccccCCCCcEEEEeCCCCCCcCccHHHHHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHHHHH
Confidence 5554442 36899999999999999988874 3577999999999999886 44467788899999999998
Q ss_pred HHHhcCCCCCCceeccCCcHHHHHHHHHhcC---CCCCCcHHHHHHHHchhhhhhhcCCC
Q psy12350 1052 AHLNEGQNPNTFHIIGHRSENFLNSIISMMR---DESPLPPVLLKVYFDSYGQLTEDFIG 1108 (1129)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~y~d~l~~~~g---~~~~~p~~~~~~~~~~~~~~~~~~~~ 1108 (1129)
.+.+... + . .|.+|+.. ...-| ....||+....++...+.+++++|..
T Consensus 493 ~~~~~t~---~----~-~~~swy~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 543 (549)
T 4ap3_A 493 NRAEASL---L----N-SANSWYLG-ANIPGRPRVFMPFLGGFGVYREIITEVAESGYKG 543 (549)
T ss_dssp HHHHTCT---T----S-CTTCTTBC-CC-----CCBCSCCSCHHHHHHHHHHHHHTTCTT
T ss_pred HHHhCCC---c----C-CCCccccC-CCCCCCCceEeecCCCHHHHHHHHhchhhhcCCC
Confidence 8877632 1 1 14444421 00002 22268888888777777777776643
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-30 Score=306.96 Aligned_cols=351 Identities=17% Similarity=0.196 Sum_probs=237.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCcccc-------ccc----
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKT-------NLP---- 808 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~-------~~~---- 808 (1129)
-+++|||+|++|+.+|..|++.| .+|+|||+++.+||+|..+.|||+.| ++| +..|..... +.+
T Consensus 10 ~dVvIIGaG~aGl~aA~~L~~~g--~~v~iiE~~~~~GGtw~~~~yPg~~~-d~~--~~~y~~~f~~~~~~~~~~~~~~~ 84 (545)
T 3uox_A 10 LDAVVIGAGVTGIYQAFLINQAG--MKVLGIEAGEDVGGTWYWNRYPGCRL-DTE--SYAYGYFALKGIIPEWEWSENFA 84 (545)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBC-SSC--HHHHCHHHHTTSSTTCCCSBSSC
T ss_pred CCEEEECccHHHHHHHHHHHhCC--CCEEEEeCCCCCCCccccCCCCceee-cCc--hhhcccccCcccccCCCccccCC
Confidence 46899999999999999999998 89999999999999999999999865 232 222321100 000
Q ss_pred --ccc--------cccc---CCCCCCC------------C------CCCCCChhhhhhcc--CCCCCCCCCCCCCCCCcE
Q psy12350 809 --KDL--------MELC---GYGHKGN------------A------DKSYIGAKDVLENY--NHPIYPEFKGKDMCQIPI 855 (1129)
Q Consensus 809 --~~~--------~~~~---~~~~~~~------------~------~~~~~~~~~v~~~~--~~P~~P~i~G~~~f~g~~ 855 (1129)
.++ ..+. ...+... | ...+.....|..+| +.|++|++||++.|+|..
T Consensus 85 ~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~ 164 (545)
T 3uox_A 85 SQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGES 164 (545)
T ss_dssp BHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEE
T ss_pred CHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCe
Confidence 000 0000 0000000 0 00000111112277 899999999999999999
Q ss_pred EeeccCCCC-------CCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCC-ccch----------------hh-
Q psy12350 856 LHSRDYRTP-------EPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSG-LDIT----------------LD- 910 (1129)
Q Consensus 856 ~hs~~~~~~-------~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~-~~~~----------------~~- 910 (1129)
+|+..|... .++.+|+|+|||+|.||+|+|.+|++.+++||++++++.. ++.. +.
T Consensus 165 ~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~p~~ 244 (545)
T 3uox_A 165 FHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSLRNRYPTI 244 (545)
T ss_dssp EEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHHHHHHHTHHHH
T ss_pred EEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHHHHHHhhhHHH
Confidence 999999876 7788999999999999999999999999999999987753 2110 00
Q ss_pred --------------------------------------------------------------------------------
Q psy12350 911 -------------------------------------------------------------------------------- 910 (1129)
Q Consensus 911 -------------------------------------------------------------------------------- 910 (1129)
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 324 (545)
T 3uox_A 245 LEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQRVKDPVVAE 324 (545)
T ss_dssp HHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence
Q ss_pred ------hhccccEEEEecCCccccccCCCCCeEEc---CC-eeEEeCCcEEecCCcEeeccEEEEccCccCcCCCCCC--
Q psy12350 911 ------IATRASTVFLSHHSERVTSLCLPNNVVLK---PD-VAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHE-- 978 (1129)
Q Consensus 911 ------~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~-i~~v~~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~-- 978 (1129)
+...|++..++..+.+ ....++|+++ .. |+++++++|+++|| ++++|+||+||||+++..++..
T Consensus 325 ~l~P~~~~~g~kR~~~~~~y~~---al~~~nV~lv~~~~~~I~~it~~gv~~~dG-~~~~D~IV~ATGf~~~~~~~~~~~ 400 (545)
T 3uox_A 325 KLIPKDHPFGAKRVPMETNYYE---TYNRDNVHLVDIREAPIQEVTPEGIKTADA-AYDLDVIIYATGFDAVTGSLDRID 400 (545)
T ss_dssp HTSCSSSCTTSSCCCEESSHHH---HTTSTTEEEEETTTSCEEEEETTEEEESSC-EEECSEEEECCCCBSSSCSCTTSE
T ss_pred hCCCCCCCCCCCccCCCccHHH---HhcCCCEEEEecCCCCceEEccCeEEeCCC-eeecCEEEECCccccccccCCCce
Confidence 0011122222221111 1224589987 34 99999999999999 9999999999999987555542
Q ss_pred ---CCCeeecCCcc--cccccceeecCCCCcEEEcccccc----chhHHHHHHHHHHHHHHc-----CCCCCCCHHHHHH
Q psy12350 979 ---SCGIKVVNKNV--QPLYKHTINIEHPTMFILGVPRHT----LLFNLFDLQVRLFQQLMQ-----GHITLPSKEEMLA 1044 (1129)
Q Consensus 979 ---~~g~~~~~~~~--~~ly~~~~~~~~p~l~~iG~~~~~----~~~~~~e~qa~~~a~~l~-----g~~~lp~~~~~~~ 1044 (1129)
..|..+++.|. ...|+++..+++||+|++.+|++. +....+|.|++|++++|. |...+.+++++++
T Consensus 401 i~g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~gp~~~~~~~s~~~~~e~~~~~i~~~i~~~~~~~~~~~~~~~~a~~ 480 (545)
T 3uox_A 401 IRGKDNVRLIDAWAEGPSTYLGLQARGFPNFFTLVGPHNGSTFCNVGVCGGLQAEWVLRMISYMKDNGFTYSEPTQAAEN 480 (545)
T ss_dssp EECGGGCBHHHHTTTSCCCBTTTBCTTCTTEEECSSGGGTGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCCEEECHHHHH
T ss_pred EECCCCccHHHhhccccceeeccccCCCCcEEEEeCCCCCCccccHHHHHHHHHHHHHHHHHHHHHCCCeEEEECHHHHH
Confidence 23455554442 258999999999999999998753 567999999999999986 5667888889999
Q ss_pred HHHHHHHHHHhcCCCCCCceeccCCcHHHHHH-HHHhcC----CCCCCcHHHHHHHHchhhhhhhcCC
Q psy12350 1045 DTKQEVLAHLNEGQNPNTFHIIGHRSENFLNS-IISMMR----DESPLPPVLLKVYFDSYGQLTEDFI 1107 (1129)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~d~-l~~~~g----~~~~~p~~~~~~~~~~~~~~~~~~~ 1107 (1129)
+|.++++.+.+.+. + . .|.+|+.. -...-| ....||+....++...+.++.+++.
T Consensus 481 ~~~~~~~~~~~~t~----~---~-~~~swy~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 540 (545)
T 3uox_A 481 RWTEEVYADFSRTL----L---A-EANAWWVKTTTKPDGSVVRRTLVHVSGGPEYRKRCEQVAYNNYN 540 (545)
T ss_dssp HHHHHHHHHHHTST----H---H-HHCGGGEEEEECSSSCEEEEESSCCSCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhcCC----c---C-CCCccccCCCCCCCCCccceeeccCCcHHHHHHHHhhhhhhcCC
Confidence 99999988876532 1 1 24444421 001112 1225887777777666666555543
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=283.14 Aligned_cols=301 Identities=21% Similarity=0.311 Sum_probs=218.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+|||||++|+++|..|++ .+++|+|||+++.+||.|.+ .|+.+..+.+...+.+++++
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~--~g~~v~vie~~~~~gg~~~~----------------~~~~~~~~~~~~~~~~~~~~ 64 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRR--SGLSYVILDAEASPGGAWQH----------------AWHSLHLFSPAGWSSIPGWP 64 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--SSCCEEEECCSSSSSGGGGG----------------SCTTCBCSSCGGGSCCSSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCcccC----------------CCCCcEecCchhhhhCCCCC
Confidence 4799999999999999999999 56999999999999999985 46666777777788888887
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
++.. ...++++.++.+|+.++++++++ .++++++|+.++... +.|. .+.+ .. ....|| +||+||
T Consensus 65 ~~~~-~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~v~~i~~~~---~~~~-~v~~-~~---g~~~~d-----~vV~At 128 (357)
T 4a9w_A 65 MPAS-QGPYPARAEVLAYLAQYEQKYAL--PVLRPIRVQRVSHFG---ERLR-VVAR-DG---RQWLAR-----AVISAT 128 (357)
T ss_dssp CCCC-SSSSCBHHHHHHHHHHHHHHTTC--CEECSCCEEEEEEET---TEEE-EEET-TS---CEEEEE-----EEEECC
T ss_pred CCCC-ccCCCCHHHHHHHHHHHHHHcCC--EEEcCCEEEEEEECC---CcEE-EEEe-CC---CEEEeC-----EEEECC
Confidence 7643 45688899999999999999988 699999999987632 2232 0322 11 267789 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
|.++.|.+|++||.. .+.+. ..++..+ .....+ ..
T Consensus 129 G~~~~~~~~~~~g~~--~~~~~-------------~~~~~~~---------------------------~~~~~~---~~ 163 (357)
T 4a9w_A 129 GTWGEAYTPEYQGLE--SFAGI-------------QLHSAHY---------------------------STPAPF---AG 163 (357)
T ss_dssp CSGGGBCCCCCTTGG--GCCSE-------------EEEGGGC---------------------------CCSGGG---TT
T ss_pred CCCCCCCCCCCCCcc--ccCCc-------------EEEeccC---------------------------CChhhc---CC
Confidence 988888889887732 11111 1111110 111122 23
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccC-CcccccC----------------------------
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSE-HVKKLRF---------------------------- 299 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~-~~~~~~~---------------------------- 299 (1129)
++++| ||+|.+|+|+|..|++.+ +|++++|+. .+++...
T Consensus 164 ~~v~V-----------vG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (357)
T 4a9w_A 164 MRVAI-----------IGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGG 231 (357)
T ss_dssp SEEEE-----------ECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC--------------------
T ss_pred CEEEE-----------ECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCccccc
Confidence 44544 799999999999999998 599999873 3333211
Q ss_pred ---------------CCCeEEcCCceEEcCCceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccc-c
Q psy12350 300 ---------------PNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKH-L 363 (1129)
Q Consensus 300 ---------------~~~i~~~~~v~~~~~~~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~-~ 363 (1129)
.+.+...+.++++++++|.++||+++++|.||+|||++++.+|++. .++. +++..+....+ +
T Consensus 232 ~~~~~~~~~~~~~~~~g~i~~~~~v~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~-~gl~-~~~G~i~vd~~~l 309 (357)
T 4a9w_A 232 FGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFRPALSHLKG-LDLV-TPQGQVEVDGSGL 309 (357)
T ss_dssp --CBCCCHHHHHHHHTTCCCEECCCSEEETTEEECTTSCEEECSEEEECCCBCCCCGGGTT-TTCB-CTTSCBCBCTTSC
T ss_pred ccCcccChhHHHHHhcCceEEecCcceEeCCeeEECCCCEecCCEEEECCCcCCCCcccCc-cccc-CCCCCccccCCcc
Confidence 1124455667888888899999999999999999999999999974 5566 55554455444 4
Q ss_pred ccCCCCCeEEecc--ccc---ccccccccceeeehhhccccccc
Q psy12350 364 INIEHPSMCIIGY--TYR---YPFLHESCGIKVVNKNVQPLYKH 402 (1129)
Q Consensus 364 ~~~~~p~l~~~G~--~~~---~~~~~~~~~~~~~a~~~~~~~~~ 402 (1129)
..++.|++|++|. ... ........||+.+|.++.+.+.|
T Consensus 310 ~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~l~g 353 (357)
T 4a9w_A 310 RALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTAYCAD 353 (357)
T ss_dssp BBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHHTC-
T ss_pred cCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHHHHHh
Confidence 5578999999993 322 12233348888889888877765
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-29 Score=296.58 Aligned_cols=294 Identities=19% Similarity=0.154 Sum_probs=201.8
Q ss_pred CcCCCChHHHHHHHHh------cccceecCCCCCcceecccCCCC-------Cc---ceEEEEEEcccCCCCCCCCCCCC
Q psy12350 446 CIIGIPGDTVVFYMFD------LQDKIRPGRGNPRPSACEADALP-------TN---LTRLTYIISSRNYSNPVYPDFKG 509 (1129)
Q Consensus 446 ~~~~~~~~e~~~y~~~------~~~~i~~~~~~~~v~~~~~~~~~-------~~---~~~~~~v~atG~~~~p~~p~~~g 509 (1129)
...++++.|+.+|+++ +..+++|+ ++|+.+++++.. .+ ...+.||+|||.++.|++|++||
T Consensus 80 ~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~---~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG 156 (545)
T 3uox_A 80 SENFASQPEMLRYVNRAADAMDVRKHYRFN---TRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKG 156 (545)
T ss_dssp SBSSCBHHHHHHHHHHHHHHHTCGGGEECS---CCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTT
T ss_pred cccCCCHHHHHHHHHHHHHHcCCcCcEEEC---CEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCC
Confidence 3456889999999982 34468884 445555554321 11 23466899999989999999999
Q ss_pred CCCcCCcEEecCCCCCC-------CCCCCCeEEEEccCcchhhhHHHhhcccCeEEEEEEecceeeeccccccCCC--CC
Q psy12350 510 KDVCQIPIMHSHEYRTP-------EPFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLRFDNKTITKRKKFDKGR--NY 580 (1129)
Q Consensus 510 ~~~f~g~v~hs~~~~~~-------~~~~~k~v~ViG~g~sa~~~~~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~--~~ 580 (1129)
+++|+|+.+|+++|++. .++++|+|+|||+|.||+|+|..|++.+++||+++|+|+|++|..+...... ..
T Consensus 157 ~~~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~ 236 (545)
T 3uox_A 157 IDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDS 236 (545)
T ss_dssp GGGCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHHHH
T ss_pred ccccCCCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHHHH
Confidence 99999999999999887 8899999999999999999999999999999999999999888753210000 00
Q ss_pred CCCCCcccccc----------------cccccc-----ee--------eeecc-cCCCccCCcc-------------EEE
Q psy12350 581 NHPIYPEFKGK----------------DMCQIP-----IL--------HSRDY-RTPEPFAGKQ-------------AVV 617 (1129)
Q Consensus 581 ~~p~~p~~~~~----------------~~~~~~-----~~--------~~~~~-~~~~~~~~~~-------------~~~ 617 (1129)
....+|.+... .....+ .+ ..... .....+.... ...
T Consensus 237 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (545)
T 3uox_A 237 LRNRYPTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQR 316 (545)
T ss_dssp HHHTHHHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 00000100000 000000 00 00000 0000000000 000
Q ss_pred Eccccccccccc-cccccCcEEEEecCCcchhcccCCCcEEe---cCCceEEeCCcEEEcCCcEEeccEEEEccCCCCCC
Q psy12350 618 VGSGQSGLDITL-DIATRASTVFLSHHSERVTSLCLPNNVVL---KPDVAELTPTGVRFQDGSYEQVDIILCCTGYTNHY 693 (1129)
Q Consensus 618 ~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~v---~~~I~~it~~gV~~~dG~~~~~D~VVlATGy~~~~ 693 (1129)
+........+.| ++..+|+|.+++. +|+++++.+|+.++ .++|++++++||++.|| ++++|+||+||||+...
T Consensus 317 v~d~~~~~~l~P~~~~~g~kR~~~~~--~y~~al~~~nV~lv~~~~~~I~~it~~gv~~~dG-~~~~D~IV~ATGf~~~~ 393 (545)
T 3uox_A 317 VKDPVVAEKLIPKDHPFGAKRVPMET--NYYETYNRDNVHLVDIREAPIQEVTPEGIKTADA-AYDLDVIIYATGFDAVT 393 (545)
T ss_dssp CSCHHHHHHTSCSSSCTTSSCCCEES--SHHHHTTSTTEEEEETTTSCEEEEETTEEEESSC-EEECSEEEECCCCBSSS
T ss_pred cCCHHHHHhCCCCCCCCCCCccCCCc--cHHHHhcCCCEEEEecCCCCceEEccCeEEeCCC-eeecCEEEECCcccccc
Confidence 000111123566 6888899988754 58999999999999 68999999999999999 99999999999999765
Q ss_pred cccccccCceeeecccccccceeeecCCCceE-EEeecccccceeeccCccccccCCc
Q psy12350 694 PFLHESCGIKVVNKNVQPLYKHTINIEHPTMF-ILGVSFTIEEFIKVCPNIVDRHGPG 750 (1129)
Q Consensus 694 ~~l~~~l~~~i~~~~g~~l~~~~~~~~~p~l~-~vG~~~~pn~~~~~g~~~iiG~G~~ 750 (1129)
.++. ++.+.|++|..|.+.|. +.|..| ++.+++|||+|+..||+.-.|.+..
T Consensus 394 ~~~~---~~~i~g~~G~~l~~~w~--~~~~~y~g~~~~gfPN~f~~~gp~~~~~~~s~ 446 (545)
T 3uox_A 394 GSLD---RIDIRGKDNVRLIDAWA--EGPSTYLGLQARGFPNFFTLVGPHNGSTFCNV 446 (545)
T ss_dssp CSCT---TSEEECGGGCBHHHHTT--TSCCCBTTTBCTTCTTEEECSSGGGTGGGSCH
T ss_pred ccCC---CceEECCCCccHHHhhc--cccceeeccccCCCCcEEEEeCCCCCCccccH
Confidence 5443 57889999999999994 457766 7888999999999999977666554
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=289.21 Aligned_cols=350 Identities=17% Similarity=0.210 Sum_probs=232.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccc-c------cccc---
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLK-T------NLPK--- 809 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~-~------~~~~--- 809 (1129)
-+++|||+|++|+++|..|++.| ++++|||+++.+||+|..+.+|++.+ +..+..|.... . ..+.
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G--~~v~iiE~~~~~GG~w~~~~~pg~~~---d~~~~~~~~~f~~~~~~~~~~~~~~~ 91 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELG--RSVHVIETAGDVGGVWYWNRYPGARC---DIESIEYCYSFSEEVLQEWNWTERYA 91 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBC---SSCTTTSSCCSCHHHHHHCCCCBSSC
T ss_pred CCEEEECccHHHHHHHHHHHhCC--CCEEEEeCCCCCCCcccccCCCceee---cccccccccccChhhhhccCcccccC
Confidence 36899999999999999999999 99999999999999999999998754 11222222110 0 0000
Q ss_pred ---cc--------cccc---CCCCC---------CC---CC------CCCCChhhhhhcc--CCCCCCCCCCCCCCCCcE
Q psy12350 810 ---DL--------MELC---GYGHK---------GN---AD------KSYIGAKDVLENY--NHPIYPEFKGKDMCQIPI 855 (1129)
Q Consensus 810 ---~~--------~~~~---~~~~~---------~~---~~------~~~~~~~~v~~~~--~~P~~P~i~G~~~f~g~~ 855 (1129)
++ ..+. ...+. ++ |. ..+.....|..+| +.|++|++||++.|+|.+
T Consensus 92 ~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~~ 171 (542)
T 1w4x_A 92 SQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNL 171 (542)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCSEE
T ss_pred CHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCce
Confidence 00 0000 00000 00 00 0000011111255 789999999999999999
Q ss_pred EeeccCC-CCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCc-cc-----h-----------h--------
Q psy12350 856 LHSRDYR-TPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGL-DI-----T-----------L-------- 909 (1129)
Q Consensus 856 ~hs~~~~-~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~-~~-----~-----------~-------- 909 (1129)
+|+..|. +..++.+|+|+|||+|.||+|+|.+|++.+++|+++.+.+... +. . |
T Consensus 172 ~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~~~~~~ 251 (542)
T 1w4x_A 172 YHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRN 251 (542)
T ss_dssp EEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHHHHHHHT
T ss_pred EECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHHHHHHHh
Confidence 9999998 5577899999999999999999999999999999998765431 10 0 0
Q ss_pred ------------------------------------------------------------------------------hh
Q psy12350 910 ------------------------------------------------------------------------------DI 911 (1129)
Q Consensus 910 ------------------------------------------------------------------------------~~ 911 (1129)
++
T Consensus 252 ~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~ 331 (542)
T 1w4x_A 252 TPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKGY 331 (542)
T ss_dssp SSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHHSCCSS
T ss_pred hccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhcCCCCC
Confidence 00
Q ss_pred hccccEEEEecCCccccccCCCCCeEEc---C-CeeEEeCCcEEecCCcEeeccEEEEccCccCcCCCCCC-----CCCe
Q psy12350 912 ATRASTVFLSHHSERVTSLCLPNNVVLK---P-DVAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHE-----SCGI 982 (1129)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~-~i~~v~~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~-----~~g~ 982 (1129)
...|++..++..+.+ ....++|+++ . .|+++++++|+++| +++++|+|||||||+++.+++.. ..|.
T Consensus 332 ~~~~kr~~~~~~y~~---~~~~~~v~lv~~~~~~i~~i~~~gv~~~d-~~~~~D~ii~atG~~~~~~~~~~~~i~g~~G~ 407 (542)
T 1w4x_A 332 PFGTKRLILEIDYYE---MFNRDNVHLVDTLSAPIETITPRGVRTSE-REYELDSLVLATGFDALTGALFKIDIRGVGNV 407 (542)
T ss_dssp CSSSSCCEEESSHHH---HTTSTTEEEEETTTSCEEEECSSEEEESS-CEEECSEEEECCCCCCTTHHHHTSEEECGGGC
T ss_pred CccccCCCCCccHHH---HhCCCCEEEEecCCCCceEEcCCeEEeCC-eEEecCEEEEcCCccccccCcCceeeECCCCC
Confidence 001111222221111 1223588886 3 49999999999999 89999999999999997554432 1233
Q ss_pred eecCCcc--cccccceeecCCCCcEEE-ccccc---cchhHHHHHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHHH
Q psy12350 983 KVVNKNV--QPLYKHTINIEHPTMFIL-GVPRH---TLLFNLFDLQVRLFQQLMQ-----GHITLPSKEEMLADTKQEVL 1051 (1129)
Q Consensus 983 ~~~~~~~--~~ly~~~~~~~~p~l~~i-G~~~~---~~~~~~~e~qa~~~a~~l~-----g~~~lp~~~~~~~~~~~~~~ 1051 (1129)
.+++.|. ...|..+..+++||+|++ |.... .+..+.+|.|++|++++|. +...+.++++.+++|.++++
T Consensus 408 ~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~~i~~~~~~~~~~~~~~~~a~~~~~~~~~ 487 (542)
T 1w4x_A 408 ALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMFKNGLTRSEAVLEKEDEWVEHVN 487 (542)
T ss_dssp BHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCCEEECHHHHHHHHHHHH
T ss_pred CHHHhhcCchheecccccCCCCceEEEcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHHHHH
Confidence 4443332 247889999999999999 55422 2456999999999999986 33466777888899999988
Q ss_pred HHHhcCCCCCCceeccCCcHHHHHHHHHh-cC---CCCCCcHHHHHHHHchhhhhhhcCCC
Q psy12350 1052 AHLNEGQNPNTFHIIGHRSENFLNSIISM-MR---DESPLPPVLLKVYFDSYGQLTEDFIG 1108 (1129)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~y~d~l~~~-~g---~~~~~p~~~~~~~~~~~~~~~~~~~~ 1108 (1129)
....... + . .|.+|+.. .. -| ....||+....++...+.+.++++.-
T Consensus 488 ~~~~~~~----~---~-~~~swy~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (542)
T 1w4x_A 488 EIADETL----Y---P-MTASWYTG--ANVPGKPRVFMLYVGGFHRYRQICDEVAAKGYEG 538 (542)
T ss_dssp HHHTTSS----G---G-GCGGGSSS--CCCTTSCCCCSSCCSCHHHHHHHHHHHHHTTSTT
T ss_pred HHHhCCC----c---C-CCCcCccC--CCCCCCcceEeccCCcHHHHHHHHhccchhcCCC
Confidence 8776531 1 2 35555532 11 12 23378887777777777777666543
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-28 Score=289.10 Aligned_cols=305 Identities=18% Similarity=0.299 Sum_probs=212.5
Q ss_pred CcceEEEEcCChHHHHHHHHhh-cCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccC-
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLT-EPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELS- 85 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~-~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~- 85 (1129)
..++|+|||||+|||+||..|+ + .|++|+|||+++.+||+|.....++ ...+++...+.++
T Consensus 7 ~~~dVvIIGaG~aGl~aA~~L~~~--~G~~v~viE~~~~~GGtw~~~~ypg---------------~~~d~~s~~~~~~~ 69 (540)
T 3gwf_A 7 HTVDAVVIGAGFGGIYAVHKLHHE--LGLTTVGFDKADGPGGTWYWNRYPG---------------ALSDTESHLYRFSF 69 (540)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSSSCTHHHHCCCTT---------------CEEEEEGGGSSCCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHc--CCCCEEEEECCCCCCCcccccCCCC---------------ceecCCcceeeecc
Confidence 3579999999999999999999 8 6689999999999999998644444 3333443333333
Q ss_pred ------CCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecce
Q psy12350 86 ------GYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQ 159 (1129)
Q Consensus 86 ------d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 159 (1129)
.+++ ...+++..++.+|++++++++++..+++++++|++++... ....|.++.. + +....+|
T Consensus 70 ~~~~~~~~~~----~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~-~~~~~~V~~~---~--G~~i~ad-- 137 (540)
T 3gwf_A 70 DRDLLQESTW----KTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLD-DENLWEVTTD---H--GEVYRAK-- 137 (540)
T ss_dssp CHHHHHHCCC----SBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEET-TTTEEEEEET---T--SCEEEEE--
T ss_pred ccccccCCCC----cccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeC-CCCEEEEEEc---C--CCEEEeC--
Confidence 1111 3357789999999999999999988999999999987532 1123444332 2 2356788
Q ss_pred eeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccc
Q psy12350 160 VRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARC 239 (1129)
Q Consensus 160 ~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 239 (1129)
+||+|||.++.|+.|++||.. .+.|. ..|+..+ ..
T Consensus 138 ---~lV~AtG~~s~p~~p~ipG~~--~f~g~-------------~~~~~~~---------------------------~~ 172 (540)
T 3gwf_A 138 ---YVVNAVGLLSAINFPNLPGLD--TFEGE-------------TIHTAAW---------------------------PE 172 (540)
T ss_dssp ---EEEECCCSCCSBCCCCCTTGG--GCCSE-------------EEEGGGC---------------------------CS
T ss_pred ---EEEECCcccccCCCCCCCCcc--ccCCC-------------EEEeecC---------------------------CC
Confidence 999999998999999998842 23221 1111111 11
Q ss_pred ccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCc-ccccC-------------------
Q psy12350 240 SEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHV-KKLRF------------------- 299 (1129)
Q Consensus 240 ~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~-~~~~~------------------- 299 (1129)
... ..+++++| ||+|.||+|+|..|++.+++||+++|++.. ++...
T Consensus 173 ~~~---~~~krV~V-----------IG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~ 238 (540)
T 3gwf_A 173 GKS---LAGRRVGV-----------IGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIW 238 (540)
T ss_dssp SCC---CTTSEEEE-----------ECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHH
T ss_pred ccc---cccceEEE-----------ECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHHH
Confidence 111 12344444 799999999999999999999999998862 11000
Q ss_pred --------------------------------------------------------------------------------
Q psy12350 300 -------------------------------------------------------------------------------- 299 (1129)
Q Consensus 300 -------------------------------------------------------------------------------- 299 (1129)
T Consensus 239 ~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~ 318 (540)
T 3gwf_A 239 ERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETAR 318 (540)
T ss_dssp HHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence
Q ss_pred -----------------------CCCeEE----cCCceEEcCCceEEcCCCEeecCEEEEcccccccCCCCCCCCCe---
Q psy12350 300 -----------------------PNNVVK----KPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGI--- 349 (1129)
Q Consensus 300 -----------------------~~~i~~----~~~v~~~~~~~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~--- 349 (1129)
..+|.+ ...|+++++++|+++||+++++|+||+||||+++..++.. ..+
T Consensus 319 ~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~-~~i~g~ 397 (540)
T 3gwf_A 319 KLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKGVVTEDGVLHELDVLVFATGFDAVDGNYRR-IEIRGR 397 (540)
T ss_dssp HHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSSEEEETTCCEEECSEEEECCCBSCSSHHHHT-SEEECG
T ss_pred hCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecCeEEcCCCCEEECCEEEECCccCccccCcCc-ceEECC
Confidence 113333 3678999999999999999999999999999988755542 212
Q ss_pred ---Eeec--CcccccccccccCCCCCeEEe-cccc---c-ccccccccceeeehhhcccccccc
Q psy12350 350 ---KVVN--KNVQPLYKHLINIEHPSMCII-GYTY---R-YPFLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 350 ---~~~~--~~~~~l~~~~~~~~~p~l~~~-G~~~---~-~~~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
.+++ ......|+.+..++.||+|++ |-.. + .+.++ +|++++++.+.....+.
T Consensus 398 ~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~s~~~~~e--~q~~~i~~~i~~~~~~~ 459 (540)
T 3gwf_A 398 DGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTNLPPSIE--TQVEWISDTIGYAERNG 459 (540)
T ss_dssp GGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCSCHHHHHH--HHHHHHHHHHHHHHHTT
T ss_pred CCcCHHHhhccChhhccccccCCCCceEEEecCCCCCccHHHHHH--HHHHHHHHHHHHHHHCC
Confidence 2211 122458899999999999998 6221 1 23344 88888888777655443
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-27 Score=286.96 Aligned_cols=294 Identities=18% Similarity=0.185 Sum_probs=204.6
Q ss_pred CcCCCChHHHHHHHHh------cccceecCCCCCcceecccCCCC-------Cc---ceEEEEEEcccCCCCCCCCCCCC
Q psy12350 446 CIIGIPGDTVVFYMFD------LQDKIRPGRGNPRPSACEADALP-------TN---LTRLTYIISSRNYSNPVYPDFKG 509 (1129)
Q Consensus 446 ~~~~~~~~e~~~y~~~------~~~~i~~~~~~~~v~~~~~~~~~-------~~---~~~~~~v~atG~~~~p~~p~~~g 509 (1129)
...++++.|+.+|+++ +..++++++ +|+.+++++.. .+ ...+.||+|||.++.|++|++||
T Consensus 92 ~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~---~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG 168 (549)
T 4ap3_A 92 SEKYATQPEILAYLEHVADRFDLRRDIRFDT---RVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDG 168 (549)
T ss_dssp SSSSCBHHHHHHHHHHHHHHTTCGGGEECSC---CEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTT
T ss_pred ccCCCCHHHHHHHHHHHHHHcCCCccEEECC---EEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCC
Confidence 3457889999999982 334678844 45555554321 11 23466899999888999999999
Q ss_pred CCCcCCcEEecCCCC-CCCCCCCCeEEEEccCcchhhhHHHhhcccCeEEEEEEecceeeeccccccCCC--CCCCCCCc
Q psy12350 510 KDVCQIPIMHSHEYR-TPEPFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLRFDNKTITKRKKFDKGR--NYNHPIYP 586 (1129)
Q Consensus 510 ~~~f~g~v~hs~~~~-~~~~~~~k~v~ViG~g~sa~~~~~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~--~~~~p~~p 586 (1129)
+++|+|.++|++.|+ +..++++|+|+|||+|.||+|+|..|++.+++||+++|+++|++|..+...... ......+|
T Consensus 169 ~~~f~g~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~~~~~~~~~~~l~~~~~ 248 (549)
T 4ap3_A 169 LDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVPLDDATRAEQKANYA 248 (549)
T ss_dssp GGGCCSEEEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC----CHHHHHHHHHTHH
T ss_pred cccCCCceEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcCCCCCHHHHHHHHhccH
Confidence 999999999999999 688999999999999999999999999999999999999999988753210000 00000000
Q ss_pred cccccc---------------ccc-cc-----ee--------eeecccCCCccCCcc-------------EEEEcccccc
Q psy12350 587 EFKGKD---------------MCQ-IP-----IL--------HSRDYRTPEPFAGKQ-------------AVVVGSGQSG 624 (1129)
Q Consensus 587 ~~~~~~---------------~~~-~~-----~~--------~~~~~~~~~~~~~~~-------------~~~~g~~~~~ 624 (1129)
.+.... ... .+ .+ .......+..+.... ...+......
T Consensus 249 ~~~~~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~ 328 (549)
T 4ap3_A 249 ERRRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFWEEKIRAVVDDPAVA 328 (549)
T ss_dssp HHHHHHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHH
T ss_pred HHHHHHHhhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 000000 000 00 00 000000000000000 0000011111
Q ss_pred cccccc-ccccCcEEEEecCCcchhcccCCCcEEe---cCCceEEeCCcEEEcCCcEEeccEEEEccCCCCCCccccccc
Q psy12350 625 LDITLD-IATRASTVFLSHHSERVTSLCLPNNVVL---KPDVAELTPTGVRFQDGSYEQVDIILCCTGYTNHYPFLHESC 700 (1129)
Q Consensus 625 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~v---~~~I~~it~~gV~~~dG~~~~~D~VVlATGy~~~~~~l~~~l 700 (1129)
..+.++ +..+|+|+++.. +|+++++.+|+.++ .++|++++++||++.|| ++++|+||+||||+....++.
T Consensus 329 ~~l~P~~~~~~~kR~~~~~--~y~~al~~~~V~lvd~~~~~I~~it~~gv~~~dG-~~~~D~iI~ATGf~~~~~~~~--- 402 (549)
T 4ap3_A 329 ELLTPKDHAIGAKRIVLDS--GYYETYNRDNVELVDLRSTPIVGMDETGIVTTGA-HYDLDMIVLATGFDAMTGSLD--- 402 (549)
T ss_dssp HHHSCSSCCBTTBCCEEES--STGGGGGSTTEEEEETTTSCEEEEETTEEEESSC-EEECSEEEECCCEEESSTTGG---
T ss_pred HhCCCCCCCCCccccCCCc--cHHHHhcCCCEEEEeCCCCCceEEeCCcEEeCCC-ceecCEEEECCcccccccccC---
Confidence 235666 888999998854 58999999999999 88999999999999999 999999999999998754554
Q ss_pred CceeeecccccccceeeecCCCceE-EEeecccccceeeccCccccccCCc
Q psy12350 701 GIKVVNKNVQPLYKHTINIEHPTMF-ILGVSFTIEEFIKVCPNIVDRHGPG 750 (1129)
Q Consensus 701 ~~~i~~~~g~~l~~~~~~~~~p~l~-~vG~~~~pn~~~~~g~~~iiG~G~~ 750 (1129)
++.+.|++|..|.+.|. +.|..| ++.+++|||+|+..||+.-.|.++.
T Consensus 403 ~~~i~g~~G~~l~~~w~--~~~~~y~g~~~~gfPN~f~~~Gp~~~~~~~s~ 451 (549)
T 4ap3_A 403 KLEIVGRGGRTLKETWA--AGPRTYLGLGIDGFPNFFNLTGPGSPSVLANM 451 (549)
T ss_dssp GSEEECGGGCBHHHHTT--TSCCCBTTTBCTTCTTEEETTCTTSCGGGSCH
T ss_pred ceeEECCCCcCHHHhhc--cchhhccccccCCCCcEEEEeCCCCCCcCccH
Confidence 46788999999999994 457666 6888999999999999987776554
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-25 Score=267.77 Aligned_cols=306 Identities=21% Similarity=0.338 Sum_probs=209.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccC--
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELS-- 85 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~-- 85 (1129)
..++|+|||||+|||+||..|++ .|++|+||||++.+||+|.....++ +....+...+.++
T Consensus 15 ~~~dVvIIGaG~aGl~aA~~L~~--~G~~v~iiE~~~~~GG~w~~~~~pg---------------~~~d~~~~~~~~~f~ 77 (542)
T 1w4x_A 15 EEVDVLVVGAGFSGLYALYRLRE--LGRSVHVIETAGDVGGVWYWNRYPG---------------ARCDIESIEYCYSFS 77 (542)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTHHHHCCCTT---------------CBCSSCTTTSSCCSC
T ss_pred CCCCEEEECccHHHHHHHHHHHh--CCCCEEEEeCCCCCCCcccccCCCc---------------eeecccccccccccC
Confidence 35799999999999999999999 5689999999999999997533333 2222222222222
Q ss_pred -----CCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEeccee
Q psy12350 86 -----GYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQV 160 (1129)
Q Consensus 86 -----d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 160 (1129)
++++ ...+++..++.+|++.+++++++..+++++++|++++... ....|.++.. + +....+|
T Consensus 78 ~~~~~~~~~----~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~-~~~~w~V~~~---~--G~~~~ad--- 144 (542)
T 1w4x_A 78 EEVLQEWNW----TERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDE-ATNTWTVDTN---H--GDRIRAR--- 144 (542)
T ss_dssp HHHHHHCCC----CBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEET-TTTEEEEEET---T--CCEEEEE---
T ss_pred hhhhhccCc----ccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcC-CCCeEEEEEC---C--CCEEEeC---
Confidence 1222 2357889999999999999999888999999999887531 1123554432 2 2346788
Q ss_pred eeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccc
Q psy12350 161 RFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCS 240 (1129)
Q Consensus 161 ~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 240 (1129)
+||+|||.++.|+.|++||.. .++|. ..|+..+ ..
T Consensus 145 --~vV~AtG~~s~p~~p~i~G~~--~f~G~-------------~~hs~~~---------------------------~~- 179 (542)
T 1w4x_A 145 --YLIMASGQLSVPQLPNFPGLK--DFAGN-------------LYHTGNW---------------------------PH- 179 (542)
T ss_dssp --EEEECCCSCCCCCCCCCTTGG--GCCSE-------------EEEGGGC---------------------------CS-
T ss_pred --EEEECcCCCCCCCCCCCCCcc--cCCCc-------------eEECCCC---------------------------CC-
Confidence 999999999999999998732 23332 0122111 10
Q ss_pred cccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcc-ccc---------------------
Q psy12350 241 EDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVK-KLR--------------------- 298 (1129)
Q Consensus 241 ~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~-~~~--------------------- 298 (1129)
+.+ ...+++++| ||+|.||+|+|..|+..+.+|+++.|++... +..
T Consensus 180 ~~~-~~~gk~V~V-----------IG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~~ 247 (542)
T 1w4x_A 180 EPV-DFSGQRVGV-----------IGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFRE 247 (542)
T ss_dssp SCC-CCBTCEEEE-----------ECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHHHH
T ss_pred chh-ccCCCEEEE-----------ECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHHHH
Confidence 101 122444444 7999999999999999999999999876431 100
Q ss_pred -------------------------------------------------------------------------------C
Q psy12350 299 -------------------------------------------------------------------------------F 299 (1129)
Q Consensus 299 -------------------------------------------------------------------------------~ 299 (1129)
.
T Consensus 248 ~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 327 (542)
T 1w4x_A 248 ESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLV 327 (542)
T ss_dssp HHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHHS
T ss_pred HHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhcC
Confidence 0
Q ss_pred C----------------------CCeEE----cCCceEEcCCceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeec
Q psy12350 300 P----------------------NNVVK----KPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVN 353 (1129)
Q Consensus 300 ~----------------------~~i~~----~~~v~~~~~~~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~ 353 (1129)
| ++|.+ ...|+++++++|+++| +++++|+||+||||+++.+++.. ..+.-.+
T Consensus 328 P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~gv~~~d-~~~~~D~ii~atG~~~~~~~~~~-~~i~g~~ 405 (542)
T 1w4x_A 328 PKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRGVRTSE-REYELDSLVLATGFDALTGALFK-IDIRGVG 405 (542)
T ss_dssp CCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSSEEEESS-CEEECSEEEECCCCCCTTHHHHT-SEEECGG
T ss_pred CCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCCeEEeCC-eEEecCEEEEcCCccccccCcCc-eeeECCC
Confidence 0 12333 4578999999999999 89999999999999987666542 2222111
Q ss_pred -Cc-------ccccccccccCCCCCeEEe-cccc---c---ccccccccceeeehhhccccccccc
Q psy12350 354 -KN-------VQPLYKHLINIEHPSMCII-GYTY---R---YPFLHESCGIKVVNKNVQPLYKHLI 404 (1129)
Q Consensus 354 -~~-------~~~l~~~~~~~~~p~l~~~-G~~~---~---~~~~~~~~~~~~~a~~~~~~~~~~~ 404 (1129)
.. ....|..+..++.||+|++ |... . ++.++ +|++++|+++.....+.+
T Consensus 406 G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~~~~~~~e--~q~~~ia~~i~~~~~~~~ 469 (542)
T 1w4x_A 406 NVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIE--QHVEWVTDHIAYMFKNGL 469 (542)
T ss_dssp GCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHH--HHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHhhcCchheecccccCCCCceEEEcCCCCCcccccHHHHHH--HHHHHHHHHHHHHHHCCC
Confidence 11 1246888888999999998 7542 1 23344 899999999887766553
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-24 Score=244.80 Aligned_cols=272 Identities=18% Similarity=0.289 Sum_probs=181.9
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYG 818 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~ 818 (1129)
..+++|||+|++|+++|..|.+.| ++|+|+|+++.+||+|.+. ++.. ..+.+.....++.++
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g--~~v~vie~~~~~gg~~~~~-~~~~---------------~~~~~~~~~~~~~~~ 64 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSG--LSYVILDAEASPGGAWQHA-WHSL---------------HLFSPAGWSSIPGWP 64 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSS--CCEEEECCSSSSSGGGGGS-CTTC---------------BCSSCGGGSCCSSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCCcccCC-CCCc---------------EecCchhhhhCCCCC
Confidence 347899999999999999999999 9999999999999999852 2222 111111111111111
Q ss_pred CCCCCCCC-----------------------------------------------CCChhhhhhcc--CCCCCCCCCCCC
Q psy12350 819 HKGNADKS-----------------------------------------------YIGAKDVLENY--NHPIYPEFKGKD 849 (1129)
Q Consensus 819 ~~~~~~~~-----------------------------------------------~~~~~~v~~~~--~~P~~P~i~G~~ 849 (1129)
.+.. ... +.....++.+| +.|++|++||.+
T Consensus 65 ~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vV~AtG~~~~~~~~~~~g~~ 143 (357)
T 4a9w_A 65 MPAS-QGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLE 143 (357)
T ss_dssp CCCC-SSSSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSCEEEEEEEEECCCSGGGBCCCCCTTGG
T ss_pred CCCC-ccCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCCEEEeCEEEECCCCCCCCCCCCCCCcc
Confidence 1100 000 00111122266 688899999999
Q ss_pred CCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecC-CCCccch---hhhhccccEEEEecCC-
Q psy12350 850 MCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSG-QSGLDIT---LDIATRASTVFLSHHS- 924 (1129)
Q Consensus 850 ~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~-~~~~~~~---~~~~~~~~~~~~~~~~- 924 (1129)
.|.+..+|+..+.+...+.+|+|+|||+|.+|+|+|.+|++.+ +|+++.+. +..++.. ..+.....+.+.....
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (357)
T 4a9w_A 144 SFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEG 222 (357)
T ss_dssp GCCSEEEEGGGCCCSGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC-----------
T ss_pred ccCCcEEEeccCCChhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccc
Confidence 9999999999999988889999999999999999999999998 59999876 3332221 1112222221111000
Q ss_pred ---------------ccccccC-CCCCeEEcCCeeEEeCCcEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCc
Q psy12350 925 ---------------ERVTSLC-LPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKN 988 (1129)
Q Consensus 925 ---------------~~~~~~~-~~~~V~~~~~i~~v~~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~ 988 (1129)
.+.+... ..+.+.....+.+++.++|.+.||+++++|.||+|||++|+++++.. .++. ++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~v~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~-~gl~-~~~G 300 (357)
T 4a9w_A 223 REPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFRPALSHLKG-LDLV-TPQG 300 (357)
T ss_dssp -----------CBCCCHHHHHHHHTTCCCEECCCSEEETTEEECTTSCEEECSEEEECCCBCCCCGGGTT-TTCB-CTTS
T ss_pred cCCCcccccccCcccChhHHHHHhcCceEEecCcceEeCCeeEECCCCEecCCEEEECCCcCCCCcccCc-cccc-CCCC
Confidence 0000000 01234555668899999999999999999999999999999998865 6777 4444
Q ss_pred ccccccc-eeecCCCCcEEEc--cccc--cchhHHHHHHHHHHHHHHcC
Q psy12350 989 VQPLYKH-TINIEHPTMFILG--VPRH--TLLFNLFDLQVRLFQQLMQG 1032 (1129)
Q Consensus 989 ~~~ly~~-~~~~~~p~l~~iG--~~~~--~~~~~~~e~qa~~~a~~l~g 1032 (1129)
...+..+ +..++.||||++| ++.. ......+..||+.+|+.+..
T Consensus 301 ~i~vd~~~l~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~ 349 (357)
T 4a9w_A 301 QVEVDGSGLRALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTA 349 (357)
T ss_dssp CBCBCTTSCBBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHH
T ss_pred CccccCCcccCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHH
Confidence 4445555 4678999999999 4443 23455677778877776653
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=246.80 Aligned_cols=290 Identities=12% Similarity=0.164 Sum_probs=196.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc----CCcCceEecCCCCCCCCCCCCccCcccccccccCCccccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT----DNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIME 83 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~----~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~ 83 (1129)
..+||+|||||+|||+||..|++ .|++|+|||+. ..+||.|.+.. ....
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~vie~~~~~~~~~gg~~~~~~-------------------------~~~~ 73 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLAR--AEIKPILYEGMMANGIAAGGQLTTTT-------------------------EIEN 73 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSBTTBCTTCGGGGSS-------------------------EECC
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEecCCCCCCCcCcccccch-------------------------hhcc
Confidence 45899999999999999999999 56999999994 47899988411 1112
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeE
Q psy12350 84 LSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163 (1129)
Q Consensus 84 ~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 163 (1129)
|+.+ +.+.+..++.+|+.++++++++ .+++++ |+.++. +.+.+.+............|| +
T Consensus 74 ~~~~-------~~~~~~~~~~~~~~~~~~~~gv--~i~~~~-v~~i~~-----~~~~~~v~~~~~~~~~~~~~d-----~ 133 (338)
T 3itj_A 74 FPGF-------PDGLTGSELMDRMREQSTKFGT--EIITET-VSKVDL-----SSKPFKLWTEFNEDAEPVTTD-----A 133 (338)
T ss_dssp STTC-------TTCEEHHHHHHHHHHHHHHTTC--EEECSC-EEEEEC-----SSSSEEEEETTCSSSCCEEEE-----E
T ss_pred cCCC-------cccCCHHHHHHHHHHHHHHcCC--EEEEeE-EEEEEE-----cCCEEEEEEEecCCCcEEEeC-----E
Confidence 2222 1245678999999999999987 788888 888875 334444443322334567899 9
Q ss_pred EEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccc
Q psy12350 164 LQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDF 243 (1129)
Q Consensus 164 lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 243 (1129)
||+||| +.|..|++||... +.+. +.+... .....+
T Consensus 134 vvlAtG--~~~~~~~~~g~~~--~~~~-------------~~~~~~----------------------------~~~~~~ 168 (338)
T 3itj_A 134 IILATG--ASAKRMHLPGEET--YWQK-------------GISACA----------------------------VCDGAV 168 (338)
T ss_dssp EEECCC--EEECCCCCTTHHH--HBTT-------------TEESCH----------------------------HHHTTS
T ss_pred EEECcC--CCcCCCCCCCchh--ccCc-------------cEEEch----------------------------hcccch
Confidence 999999 6788888877321 1110 001000 001111
Q ss_pred ccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc--------cC-CCCeEEcCCceEEcC
Q psy12350 244 TEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL--------RF-PNNVVKKPDIAELTP 314 (1129)
Q Consensus 244 ~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~--------~~-~~~i~~~~~v~~~~~ 314 (1129)
.....++++| ||+|.+|+|+|..|++.+.+|++++|.+.+... .. .-++..+..|+++++
T Consensus 169 ~~~~~~~v~v-----------vG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~~~~~~~~l~~~~gv~i~~~~~v~~i~~ 237 (338)
T 3itj_A 169 PIFRNKPLAV-----------IGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKG 237 (338)
T ss_dssp GGGTTSEEEE-----------ECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHHCTTEEEECSEEEEEEEE
T ss_pred hhcCCCEEEE-----------ECCCHHHHHHHHHHHhcCCEEEEEEcCCccCCCHHHHHHHHhcCCeEEeecceeEEEEc
Confidence 1122344444 799999999999999999999999998876431 11 113445667888865
Q ss_pred Cc-----eEEcC-----CCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc---c
Q psy12350 315 TG-----VRFQD-----GSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY---P 381 (1129)
Q Consensus 315 ~~-----v~~~d-----g~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~---~ 381 (1129)
++ |++++ ++++++|.||+|+|++++.+++.. ++..+++..+..-.....++.|++|.+|..... .
T Consensus 238 ~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~--~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~~~ 315 (338)
T 3itj_A 238 DGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAG--QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQ 315 (338)
T ss_dssp SSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBT--TBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSCCC
T ss_pred ccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhC--ceEecCCCcEEEcCcccccCCCCEEEeeccCCCCccc
Confidence 43 77776 456899999999999999999874 566665554432222334678999999988642 2
Q ss_pred ccccccceeeehhhccccccc
Q psy12350 382 FLHESCGIKVVNKNVQPLYKH 402 (1129)
Q Consensus 382 ~~~~~~~~~~~a~~~~~~~~~ 402 (1129)
......||+.+|.++...+.+
T Consensus 316 ~~~A~~~g~~aa~~i~~~l~~ 336 (338)
T 3itj_A 316 AITSAGSGCMAALDAEKYLTS 336 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred eeeehhhhHHHHHHHHHHHhc
Confidence 233347888888877765543
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-24 Score=247.13 Aligned_cols=310 Identities=15% Similarity=0.221 Sum_probs=191.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.++|+|||||+||+++|..|++ .++ +|+|||+++ +||+|.+.+.... .+. .......+.+.++
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~--~g~~~v~lie~~~-~Gg~~~~~~~~~~----------~~~---~~~~~~~~g~~~~ 67 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKD--FGITDVIILEKGT-VGHSFKHWPKSTR----------TIT---PSFTSNGFGMPDM 67 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSS-TTHHHHTSCTTCB----------CSS---CCCCCGGGTCCCT
T ss_pred cCcEEEECcCHHHHHHHHHHHH--cCCCcEEEEecCC-CCCccccCccccc----------ccC---cchhcccCCchhh
Confidence 4799999999999999999999 557 999999988 9999985332110 000 0001111111111
Q ss_pred CCCCC-------CCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEeccee
Q psy12350 88 HHKGH-------PDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQV 160 (1129)
Q Consensus 88 ~~~~~-------~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 160 (1129)
..+.. ....+++..++.+|++.+++++++ .++++++|+++++.. +.|.+... . ....||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv--~i~~~~~v~~i~~~~---~~~~v~~~---~---g~~~~d--- 133 (369)
T 3d1c_A 68 NAISMDTSPAFTFNEEHISGETYAEYLQVVANHYEL--NIFENTVVTNISADD---AYYTIATT---T---ETYHAD--- 133 (369)
T ss_dssp TCSSTTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTC--EEECSCCEEEEEECS---SSEEEEES---S---CCEEEE---
T ss_pred hhccccccccccccccCCCHHHHHHHHHHHHHHcCC--eEEeCCEEEEEEECC---CeEEEEeC---C---CEEEeC---
Confidence 11100 012467788999999999999987 789999999887631 24444321 1 146788
Q ss_pred eeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccc
Q psy12350 161 RFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCS 240 (1129)
Q Consensus 161 ~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 240 (1129)
+||+|||.+..|.+| + +. ..++..+ ...
T Consensus 134 --~vVlAtG~~~~p~ip---~-------~~-------------~~~~~~~---------------------------~~~ 161 (369)
T 3d1c_A 134 --YIFVATGDYNFPKKP---F-------KY-------------GIHYSEI---------------------------EDF 161 (369)
T ss_dssp --EEEECCCSTTSBCCC---S-------SS-------------CEEGGGC---------------------------SCG
T ss_pred --EEEECCCCCCccCCC---C-------Cc-------------eechhhc---------------------------CCh
Confidence 999999966555443 2 00 0111110 111
Q ss_pred cccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc-cC------------------CC
Q psy12350 241 EDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL-RF------------------PN 301 (1129)
Q Consensus 241 ~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~-~~------------------~~ 301 (1129)
+.+ ..++++| ||+|.+|+|+|..|++.+.+|++++|++.+... .+ ..
T Consensus 162 ~~~---~~~~vvV-----------vG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~ 227 (369)
T 3d1c_A 162 DNF---NKGQYVV-----------IGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQG 227 (369)
T ss_dssp GGS---CSSEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTT
T ss_pred hhc---CCCEEEE-----------ECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhC
Confidence 111 2344444 799999999999999999999999998766521 00 01
Q ss_pred -Ce--EEcCCceEE--cCCc--eEEcCCCEee-cCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEE
Q psy12350 302 -NV--VKKPDIAEL--TPTG--VRFQDGSYEQ-VDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCI 373 (1129)
Q Consensus 302 -~i--~~~~~v~~~--~~~~--v~~~dg~~~~-~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~ 373 (1129)
+| ..+..|+++ ++++ |.+.||+++. +|.||+|||++++++++.+. .+. +++..+.+..+...++.|++|+
T Consensus 228 g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~-~~~-~~~g~i~v~~~~~~t~~~~v~a 305 (369)
T 3d1c_A 228 ARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQ-LFV-TTNQDIKLTTHDESTRYPNIFM 305 (369)
T ss_dssp CCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGGGSHHHHH-HSC-CTTSCCCBCTTSBBSSSTTEEE
T ss_pred CcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCCccchhhhh-hcc-CCCCCEEechhhcccCCCCeEE
Confidence 14 335678888 3443 7788998774 69999999999998665421 122 3333334444445578899999
Q ss_pred ecccccc---cc---cccccceeeehhhcccccccccccccccceecCCCcccchhhhhcccc
Q psy12350 374 IGYTYRY---PF---LHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGIPVESCGIKVVNKNV 430 (1129)
Q Consensus 374 ~G~~~~~---~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 430 (1129)
+|..... ++ ....+|++++|+++. +.+++ |+.++|.++...+.
T Consensus 306 ~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~----~~~~~----------p~~~~~~~~~~~~~ 354 (369)
T 3d1c_A 306 IGATVENDNAKLCYIYKFRARFAVLAHLLT----QREGL----------PAKQEVIENYQKNQ 354 (369)
T ss_dssp CSTTCCCSSCCCCSHHHHGGGHHHHHHHHH----HHTTC----------CCCHHHHHHHHHTT
T ss_pred eccccccCCeeEEEEehhhHHHHHHHHHHh----cccCC----------CCcchHHHHHHhcC
Confidence 9987532 11 123366666666655 55565 77777776555444
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-24 Score=253.06 Aligned_cols=284 Identities=17% Similarity=0.211 Sum_probs=186.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
.||+||||||||++||.+|++.+.+.+|+|||+++.+++... .+|..+.....
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~------------------------~l~~~~~~~~~--- 53 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC------------------------ALPYVIGEVVE--- 53 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGG------------------------GHHHHHTTSSC---
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcc------------------------hhHHHHcCCcc---
Confidence 379999999999999999999777789999999775432100 01110000000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
+......... +.+.++.++ .++.+++|+.++. +...+.+............|| +||||||
T Consensus 54 -~~~~~~~~~~-------~~~~~~~~i--~~~~~~~V~~id~-----~~~~~~~~~~~~~~~~~~~yd-----~lVIATG 113 (437)
T 4eqs_A 54 -DRRYALAYTP-------EKFYDRKQI--TVKTYHEVIAIND-----ERQTVSVLNRKTNEQFEESYD-----KLILSPG 113 (437)
T ss_dssp -CGGGTBCCCH-------HHHHHHHCC--EEEETEEEEEEET-----TTTEEEEEETTTTEEEEEECS-----EEEECCC
T ss_pred -chhhhhhcCH-------HHHHHhcCC--EEEeCCeEEEEEc-----cCcEEEEEeccCCceEEEEcC-----EEEECCC
Confidence 0000000111 233455666 7888999999876 445555555444555567899 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccccc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKD 249 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1129)
+.|+.|++||.....+ +...... ...+.+.....+
T Consensus 114 --s~p~~p~i~g~~~~~~---------------~~~~~~~----------------------------~l~~~~~~~~~~ 148 (437)
T 4eqs_A 114 --ASANSLGFESDITFTL---------------RNLEDTD----------------------------AIDQFIKANQVD 148 (437)
T ss_dssp --EEECCCCCCCTTEECC---------------SSHHHHH----------------------------HHHHHHHHHTCC
T ss_pred --CccccccccCceEEee---------------ccHHHHH----------------------------HHHHhhhccCCc
Confidence 8888888876321110 0000000 011111111123
Q ss_pred ceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCceEEcCC
Q psy12350 250 KYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAELTPT 315 (1129)
Q Consensus 250 ~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~~~~ 315 (1129)
+++| ||||++|+|+|..+++.|.+||+++|.+++++..+++ ++..+..|++++++
T Consensus 149 ~vvV-----------iGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~ 217 (437)
T 4eqs_A 149 KVLV-----------VGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGN 217 (437)
T ss_dssp EEEE-----------ECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCEEESCCEEEEETT
T ss_pred EEEE-----------ECCccchhhhHHHHHhcCCcceeeeeeccccccccchhHHHHHHHhhccceEEEeccEEEEecCC
Confidence 3443 7999999999999999999999999999887654432 67788899999999
Q ss_pred ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccccc------------
Q psy12350 316 GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYPFL------------ 383 (1129)
Q Consensus 316 ~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~~~------------ 383 (1129)
.|.+++|+++++|.||+|+|.+|+..+++ ..++..+++..+....++ -+++|++|.+|.....|..
T Consensus 218 ~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~-~~gl~~~~~G~I~vd~~~-~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~ 295 (437)
T 4eqs_A 218 EITFKSGKVEHYDMIIEGVGTHPNSKFIE-SSNIKLDRKGFIPVNDKF-ETNVPNIYAIGDIATSHYRHVDLPASVPLAW 295 (437)
T ss_dssp EEEETTSCEEECSEEEECCCEEESCGGGT-TSSCCCCTTSCEECCTTC-BCSSTTEEECGGGEEEEBSSSSSEECCCSHH
T ss_pred eeeecCCeEEeeeeEEEEeceecCcHHHH-hhhhhhccCCcEecCCCc-cCCCCCEEEEEEccCcccccCCccccchhHH
Confidence 99999999999999999999999999887 456776665443332222 2688999999987533221
Q ss_pred ccccceeeehhhccc
Q psy12350 384 HESCGIKVVNKNVQP 398 (1129)
Q Consensus 384 ~~~~~~~~~a~~~~~ 398 (1129)
.+..|++.+|.++.+
T Consensus 296 ~A~~~g~~~a~ni~g 310 (437)
T 4eqs_A 296 GAHRAASIVAEQIAG 310 (437)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcC
Confidence 112566666666653
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-23 Score=236.79 Aligned_cols=289 Identities=16% Similarity=0.219 Sum_probs=189.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||+||++||..|++ .+++|+|||+++.+||.|... |+. +.+..++.+
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~----------------~~~------~~~~~~~~~ 59 (335)
T 2zbw_A 4 DHTDVLIVGAGPTGLFAGFYVGM--RGLSFRFVDPLPEPGGQLTAL----------------YPE------KYIYDVAGF 59 (335)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSCHHHHHT----------------CTT------SEECCSTTC
T ss_pred CcCcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCCCCeeecc----------------CCC------ceeeccCCC
Confidence 35899999999999999999999 569999999999999999731 110 001111111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
| .....++.+++.++++++++ .++++++|+.++... +.|.+.. . ......|| +||+|
T Consensus 60 ~--------~~~~~~~~~~l~~~~~~~~~--~~~~~~~v~~i~~~~---~~~~v~~---~--~g~~~~~~-----~lv~A 116 (335)
T 2zbw_A 60 P--------KVYAKDLVKGLVEQVAPFNP--VYSLGERAETLEREG---DLFKVTT---S--QGNAYTAK-----AVIIA 116 (335)
T ss_dssp S--------SEEHHHHHHHHHHHHGGGCC--EEEESCCEEEEEEET---TEEEEEE---T--TSCEEEEE-----EEEEC
T ss_pred C--------CCCHHHHHHHHHHHHHHcCC--EEEeCCEEEEEEECC---CEEEEEE---C--CCCEEEeC-----EEEEC
Confidence 1 23467889999999988876 788899999987631 1233321 1 12356788 99999
Q ss_pred cccCC-CCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 168 QGHVT-LPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 168 tG~~~-~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||..+ .|..|++||.. .+.+. +.+. .....+. .
T Consensus 117 tG~~~~~p~~~~i~g~~--~~~~~-------------~~~~----------------------------~~~~~~~---~ 150 (335)
T 2zbw_A 117 AGVGAFEPRRIGAPGER--EFEGR-------------GVYY----------------------------AVKSKAE---F 150 (335)
T ss_dssp CTTSEEEECCCCCTTTT--TTBTT-------------TEES----------------------------SCSCGGG---G
T ss_pred CCCCCCCCCCCCCCChh--hccCc-------------EEEE----------------------------ecCchhh---c
Confidence 99432 57777776521 11110 0000 0011111 1
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccC------------CCCeEEcCCceEEcC
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRF------------PNNVVKKPDIAELTP 314 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~------------~~~i~~~~~v~~~~~ 314 (1129)
..++++| ||+|.+|+|+|..|++.+.+|++++|++.+..... .-++.....|+++++
T Consensus 151 ~~~~v~v-----------iG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~ 219 (335)
T 2zbw_A 151 QGKRVLI-----------VGGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVKELMKAHEEGRLEVLTPYELRRVEG 219 (335)
T ss_dssp TTCEEEE-----------ECSSHHHHHHHHHTTTTSSEEEEECSSSSCCSCHHHHHHHHHHHHTTSSEEETTEEEEEEEE
T ss_pred CCCEEEE-----------ECCCHHHHHHHHHHHhhCCEEEEEEcCCccCccHHHHHHHHhccccCCeEEecCCcceeEcc
Confidence 2344444 79999999999999999999999999886643210 113444556788865
Q ss_pred C----ceEEc---CC--CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc----
Q psy12350 315 T----GVRFQ---DG--SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP---- 381 (1129)
Q Consensus 315 ~----~v~~~---dg--~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~---- 381 (1129)
+ +|.++ +| +++++|.||+|+|++++.++++. .++..+. ..+....+ +.++.|++|++|.....|
T Consensus 220 ~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~-~~~~~~~-g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~ 296 (335)
T 2zbw_A 220 DERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLAN-WGLALEK-NKIKVDTT-MATSIPGVYACGDIVTYPGKLP 296 (335)
T ss_dssp SSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGG-SCCCEET-TEEECCTT-CBCSSTTEEECSTTEECTTCCC
T ss_pred CCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhh-cceeccC-CeeeeCCC-CCCCCCCEEEeccccccCcchh
Confidence 4 47776 77 46899999999999999988863 4455442 22222222 235789999999875321
Q ss_pred c-cccccceeeehhhcccccccc
Q psy12350 382 F-LHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 382 ~-~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
. .....|++.+|.++.+.+.+.
T Consensus 297 ~~~~A~~~g~~aa~~i~~~l~~~ 319 (335)
T 2zbw_A 297 LIVLGFGEAAIAANHAAAYANPA 319 (335)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhhhhHHHHHHHHHHHHHHhhhh
Confidence 1 222367888888887665544
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.5e-23 Score=232.06 Aligned_cols=288 Identities=16% Similarity=0.224 Sum_probs=189.8
Q ss_pred CCCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCcccccc
Q psy12350 5 KTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMEL 84 (1129)
Q Consensus 5 ~~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~ 84 (1129)
.+...++|+||||||||++||..|++ .+++|+|||++ .+||.|.+... ...+
T Consensus 4 ~~~~~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~-~~gg~~~~~~~-------------------------~~~~ 55 (325)
T 2q7v_A 4 PTAHDYDVVIIGGGPAGLTAAIYTGR--AQLSTLILEKG-MPGGQIAWSEE-------------------------VENF 55 (325)
T ss_dssp CCCEEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CTTGGGGGCSC-------------------------BCCS
T ss_pred CccccCCEEEECCCHHHHHHHHHHHH--cCCcEEEEeCC-CCCcccccccc-------------------------cccC
Confidence 34456899999999999999999999 56999999997 79999884110 1112
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCC-CceEEeccccCccceEEecceeeeE
Q psy12350 85 SGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEH-PSMCIIGIPRDTVGFYLFDLQVRFF 163 (1129)
Q Consensus 85 ~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~ 163 (1129)
+.++ ..++..++.+++.++++++++ .+++ ++|+.++.... .+. |.+... + .....|| +
T Consensus 56 ~~~~-------~~~~~~~~~~~l~~~~~~~gv--~~~~-~~v~~i~~~~~-~~~~~~v~~~---~--g~~~~~~-----~ 114 (325)
T 2q7v_A 56 PGFP-------EPIAGMELAQRMHQQAEKFGA--KVEM-DEVQGVQHDAT-SHPYPFTVRG---Y--NGEYRAK-----A 114 (325)
T ss_dssp TTCS-------SCBCHHHHHHHHHHHHHHTTC--EEEE-CCEEEEEECTT-SSSCCEEEEE---S--SCEEEEE-----E
T ss_pred CCCC-------CCCCHHHHHHHHHHHHHHcCC--EEEe-eeEEEEEeccC-CCceEEEEEC---C--CCEEEeC-----E
Confidence 2221 124567899999999999887 5665 57888765200 011 444322 1 2356788 9
Q ss_pred EEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccc
Q psy12350 164 LQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDF 243 (1129)
Q Consensus 164 lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 243 (1129)
||+||| +.|..|++||... +.+ .+.+...+ .+..
T Consensus 115 vv~AtG--~~~~~~~i~g~~~--~~~-------------~~~~~~~~-----------------------------~~~~ 148 (325)
T 2q7v_A 115 VILATG--ADPRKLGIPGEDN--FWG-------------KGVSTCAT-----------------------------CDGF 148 (325)
T ss_dssp EEECCC--EEECCCCCTTTTT--TBT-------------TTEESCHH-----------------------------HHGG
T ss_pred EEECcC--CCcCCCCCCChhh--ccC-------------ceEEEecc-----------------------------CCHH
Confidence 999999 6678887776311 111 01110000 0000
Q ss_pred ccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc-------cCCCC--eEEcCCceEEcC
Q psy12350 244 TEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL-------RFPNN--VVKKPDIAELTP 314 (1129)
Q Consensus 244 ~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~-------~~~~~--i~~~~~v~~~~~ 314 (1129)
....++++| ||+|.+|+|+|..|++.+.+|++++|.+.+... ..... +..+..|+++.+
T Consensus 149 -~~~~~~v~V-----------vG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~i~~~~~v~~i~~ 216 (325)
T 2q7v_A 149 -FYKGKKVVV-----------IGGGDAAVEEGMFLTKFADEVTVIHRRDTLRANKVAQARAFANPKMKFIWDTAVEEIQG 216 (325)
T ss_dssp -GGTTCEEEE-----------ECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEE
T ss_pred -HcCCCEEEE-----------ECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCcchHHHHHHHhcCCceEecCCceEEEcc
Confidence 012344444 799999999999999999999999998765321 01123 344667888865
Q ss_pred C----ceEEc---CCC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc---c
Q psy12350 315 T----GVRFQ---DGS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP---F 382 (1129)
Q Consensus 315 ~----~v~~~---dg~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~---~ 382 (1129)
+ +|.++ +|+ ++++|.||+|+|++++.+++.. . +..+++..+....+ +.+++|++|++|.....+ .
T Consensus 217 ~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~-~-~~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~ 293 (325)
T 2q7v_A 217 ADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKD-T-VSLRDDGYVDVRDE-IYTNIPMLFAAGDVSDYIYRQL 293 (325)
T ss_dssp SSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTT-T-SCBCTTSCBCCBTT-TBCSSTTEEECSTTTCSSCCCH
T ss_pred CCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhh-h-cccCCCccEecCCC-CccCCCCEEEeecccCccHHHH
Confidence 4 47776 676 6799999999999999999874 3 44544433333333 236789999999885431 2
Q ss_pred cccccceeeehhhccccccc
Q psy12350 383 LHESCGIKVVNKNVQPLYKH 402 (1129)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~ 402 (1129)
.....|++.+|.++.+.+.+
T Consensus 294 ~~A~~~g~~aa~~i~~~l~~ 313 (325)
T 2q7v_A 294 ATSVGAGTRAAMMTERQLAA 313 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33348888888888876654
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-23 Score=234.94 Aligned_cols=288 Identities=16% Similarity=0.189 Sum_probs=191.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+|||||+|||+||..|++ .+++|+|||+++.+||.|.+ .|+.. .+..+++++
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gG~~~~----------------~~~~~------~~~~~~~~~ 62 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGM--RQASVKIIESLPQLGGQLSA----------------LYPEK------YIYDVAGFP 62 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHH----------------HCTTS------EECCSTTCS
T ss_pred cceEEEECCCHHHHHHHHHHHH--CCCCEEEEEcCCCCCceehh----------------cCCCc------eEeccCCCC
Confidence 4799999999999999999999 66999999999999999963 12110 111222221
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
..+..++.+|+.++++++++ .++++++|+.++... ...|.+... .+ ...|| +||+||
T Consensus 63 --------~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~--~~~~~v~~~---~g---~~~~d-----~vVlAt 119 (332)
T 3lzw_A 63 --------KIRAQELINNLKEQMAKFDQ--TICLEQAVESVEKQA--DGVFKLVTN---EE---THYSK-----TVIITA 119 (332)
T ss_dssp --------SEEHHHHHHHHHHHHTTSCC--EEECSCCEEEEEECT--TSCEEEEES---SE---EEEEE-----EEEECC
T ss_pred --------CCCHHHHHHHHHHHHHHhCC--cEEccCEEEEEEECC--CCcEEEEEC---CC---EEEeC-----EEEECC
Confidence 23568999999999998876 889999999987632 113444331 11 26788 999999
Q ss_pred ccCC-CCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 169 GHVT-LPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 169 G~~~-~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|..+ .|..|++||... +.+. +.+. .+.....+ .
T Consensus 120 G~~~~~p~~~~~~g~~~--~~g~-------------~~~~----------------------------~~~~~~~~---~ 153 (332)
T 3lzw_A 120 GNGAFKPRKLELENAEQ--YEGK-------------NLHY----------------------------FVDDLQKF---A 153 (332)
T ss_dssp TTSCCEECCCCCTTGGG--GBTT-------------TEES----------------------------SCSCGGGG---B
T ss_pred CCCcCCCCCCCCCChhh--ccCc-------------eEEE----------------------------ecCCHHHc---C
Confidence 9432 788888876321 1111 0000 00111111 2
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc--------CCCCeEEcCCceEEcCCc---
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR--------FPNNVVKKPDIAELTPTG--- 316 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~--------~~~~i~~~~~v~~~~~~~--- 316 (1129)
.++++| ||+|.+|+|+|..|++.+.+|++++|.+.+.... ..-++..+..|+++++++
T Consensus 154 ~~~v~v-----------vG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~ 222 (332)
T 3lzw_A 154 GRRVAI-----------LGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVENLHASKVNVLTPFVPAELIGEDKIE 222 (332)
T ss_dssp TCEEEE-----------ECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSCHHHHHHHHHSSCEEETTEEEEEEECSSSCC
T ss_pred CCEEEE-----------ECCCHhHHHHHHHHHhhCCeEEEEEecCcCCccHHHHHHHhcCCeEEEeCceeeEEecCCceE
Confidence 344444 7999999999999999999999999988764321 111344456788887653
Q ss_pred -eEEcC-----CCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccc---cc--cccc
Q psy12350 317 -VRFQD-----GSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYR---YP--FLHE 385 (1129)
Q Consensus 317 -v~~~d-----g~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~---~~--~~~~ 385 (1129)
|.+++ ++++++|.||+|+|++++.++++. .++..+ +..+....+ +..+.|++|.+|.... .| ....
T Consensus 223 ~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~-~~~~~~-~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~~~A 299 (332)
T 3lzw_A 223 QLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKN-WGLDIE-KNSIVVKST-METNIEGFFAAGDICTYEGKVNLIASG 299 (332)
T ss_dssp EEEEEETTSCCEEEEECSEEEECCCEECCCGGGGG-SSCCEE-TTEEECCTT-SBCSSTTEEECGGGEECTTCCCCHHHH
T ss_pred EEEEEecCCCceEEEECCEEEEeeccCCCchHHhh-cCcccc-CCeEEeCCC-CceecCCEEEccceecCCCCcceEeee
Confidence 78876 356799999999999999998763 445542 222222222 2247899999998752 11 1233
Q ss_pred ccceeeehhhcccccccc
Q psy12350 386 SCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 386 ~~~~~~~a~~~~~~~~~~ 403 (1129)
..||+.+|.++...+.+.
T Consensus 300 ~~~g~~aa~~i~~~l~~~ 317 (332)
T 3lzw_A 300 FGEAPTAVNNAKAYMDPK 317 (332)
T ss_dssp HHHHHHHHHHHHHHHCTT
T ss_pred hhhHHHHHHHHHHhhChh
Confidence 477778888777665543
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-23 Score=248.68 Aligned_cols=293 Identities=14% Similarity=0.160 Sum_probs=168.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
+++|+|||||+|||+||..|++.+++++|+|||+++.++ |.. .+ .+. .+.......
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~--~~~---~g------------l~~---~~~g~~~~~---- 58 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS--YGG---CG------------IPY---YVSGEVSNI---- 58 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc--ccc---cc------------cch---hhcCCCCch----
Confidence 379999999999999999999976689999999988654 110 00 000 000000000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
...++...++.++.+.+++++++ .++++++|+.+++ +...+.+.+...+......|| +||+||
T Consensus 59 -----~~~~~~~~~~~~~~~~~~~~~gi--~~~~~~~V~~id~-----~~~~v~~~~~~~g~~~~~~~d-----~lviAt 121 (472)
T 3iwa_A 59 -----ESLQATPYNVVRDPEFFRINKDV--EALVETRAHAIDR-----AAHTVEIENLRTGERRTLKYD-----KLVLAL 121 (472)
T ss_dssp ---------------------------C--EEECSEEEEEEET-----TTTEEEEEETTTCCEEEEECS-----EEEECC
T ss_pred -----HHhccccchhccCHHHHhhhcCc--EEEECCEEEEEEC-----CCCEEEEeecCCCCEEEEECC-----EEEEeC
Confidence 00011122356667777777776 7889999999876 445555554333444467899 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|..|++||... .+. ..... ...+....+.+.....
T Consensus 122 G--~~p~~p~i~G~~~---~~v---------------~~~~~----------------------~~~~~~l~~~l~~~~~ 159 (472)
T 3iwa_A 122 G--SKANRPPVEGMDL---AGV---------------TPVTN----------------------LDEAEFVQHAISAGEV 159 (472)
T ss_dssp C--EEECCCSCTTTTS---BTE---------------EECCS----------------------HHHHHHHHHHCCTTSC
T ss_pred C--CCcCCCCCCCCCC---CCE---------------EEeCC----------------------HHHHHHHHHHhhcCCC
Confidence 9 7888888877321 110 00000 0000000000000112
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhccc-ccEEEEccccCCccc-ccCC--------------CCeEEcCCceEE
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTE-ATTVFLSHHSEHVKK-LRFP--------------NNVVKKPDIAEL 312 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~-~~~V~lv~r~~~~~~-~~~~--------------~~i~~~~~v~~~ 312 (1129)
++++| ||+|++|+|+|..+++. +.+|+++++.+.+++ ...+ -++..++.|+++
T Consensus 160 ~~vvV-----------iGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i 228 (472)
T 3iwa_A 160 SKAVI-----------VGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRL 228 (472)
T ss_dssp SEEEE-----------ECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEE
T ss_pred CEEEE-----------ECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEE
Confidence 33443 79999999999999999 999999999987766 2221 145556788888
Q ss_pred cC-Cc---eEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc--------
Q psy12350 313 TP-TG---VRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY-------- 380 (1129)
Q Consensus 313 ~~-~~---v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~-------- 380 (1129)
++ ++ |.++||+++++|.||+|||++++.+++. ..++.++++..+....++ .++.|++|++|.....
T Consensus 229 ~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~-~~gl~~~~~g~i~vd~~~-~t~~~~Iya~GD~~~~~~~~~g~~ 306 (472)
T 3iwa_A 229 EGENGKVARVITDKRTLDADLVILAAGVSPNTQLAR-DAGLELDPRGAIIVDTRM-RTSDPDIFAGGDCVTIPNLVTGKP 306 (472)
T ss_dssp EESSSBEEEEEESSCEEECSEEEECSCEEECCHHHH-HHTCCBCTTCCEECCTTC-BCSSTTEEECGGGEEEEBTTTSSE
T ss_pred EccCCeEEEEEeCCCEEEcCEEEECCCCCcCHHHHH-hCCccCCCCCCEEECCCc-ccCCCCEEEeccceecccccCCce
Confidence 75 32 6788999999999999999999988764 344555544433222222 2578999999987521
Q ss_pred ---cc-cccccceeeehhhcc
Q psy12350 381 ---PF-LHESCGIKVVNKNVQ 397 (1129)
Q Consensus 381 ---~~-~~~~~~~~~~a~~~~ 397 (1129)
|+ .....|++.+|.++.
T Consensus 307 ~~~~~~~~A~~~g~~aa~~i~ 327 (472)
T 3iwa_A 307 GFFPLGSMANRQGRVIGTNLA 327 (472)
T ss_dssp ECCCCTTHHHHHHHHHHHHHT
T ss_pred eecchHHHHHHHHHHHHHHhc
Confidence 11 112366666666665
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-23 Score=256.29 Aligned_cols=290 Identities=17% Similarity=0.230 Sum_probs=188.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||+|||+||.+|++.+++++|+|||+++.+| |. + .. ++..+ .+
T Consensus 35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~--~~--~-------------~~-------lp~~~---~g- 86 (588)
T 3ics_A 35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS--FA--N-------------CG-------LPYYI---GG- 86 (588)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS--BC--G-------------GG-------HHHHH---TT-
T ss_pred cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc--cc--C-------------CC-------Cchhh---cC-
Confidence 3579999999999999999999976689999999988654 11 0 00 00000 00
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
........+.++++.+++++++ .++++++|+.++. +...+.+.+...+......|| +||+|
T Consensus 87 -------~~~~~~~~~~~~~~~~~~~~gi--~v~~~~~V~~id~-----~~~~v~v~~~~~g~~~~~~~d-----~lviA 147 (588)
T 3ics_A 87 -------VITERQKLLVQTVERMSKRFNL--DIRVLSEVVKINK-----EEKTITIKNVTTNETYNEAYD-----VLILS 147 (588)
T ss_dssp -------SSCCGGGGBSSCHHHHHHHTTC--EEECSEEEEEEET-----TTTEEEEEETTTCCEEEEECS-----EEEEC
T ss_pred -------cCCChHHhhccCHHHHHHhcCc--EEEECCEEEEEEC-----CCCEEEEeecCCCCEEEEeCC-----EEEEC
Confidence 0011122344566777888887 7899999999876 445566654434443467799 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| +.|..|++||... ..+. ........ .......+....
T Consensus 148 tG--~~p~~p~i~G~~~--~~~v---------~~~~~~~~----------------------------~~~~~~~l~~~~ 186 (588)
T 3ics_A 148 PG--AKPIVPSIPGIEE--AKAL---------FTLRNVPD----------------------------TDRIKAYIDEKK 186 (588)
T ss_dssp CC--EEECCCCCTTTTT--CTTE---------EECSSHHH----------------------------HHHHHHHHHHHC
T ss_pred CC--CCCCCCCCCCccc--CCCe---------EEeCCHHH----------------------------HHHHHHHHhhcC
Confidence 99 7888888877310 0000 00000000 000000010112
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCeEEcCCceEEc
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNVVKKPDIAELT 313 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i~~~~~v~~~~ 313 (1129)
.++++| ||+|++|+|+|..|++.|.+|+++++.+.+++...+ -++..++.|++++
T Consensus 187 ~~~vvV-----------iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~ 255 (588)
T 3ics_A 187 PRHATV-----------IGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALE 255 (588)
T ss_dssp CSEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEE
T ss_pred CCeEEE-----------ECCCHHHHHHHHHHHhCCCeEEEEecCCcccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEe
Confidence 234444 899999999999999999999999998877664221 1455677899997
Q ss_pred C--CceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc-----------
Q psy12350 314 P--TGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY----------- 380 (1129)
Q Consensus 314 ~--~~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~----------- 380 (1129)
+ ++|.++||+++++|.||+|||++++.++++ ..++.++++..+....+ +.++.|++|++|.....
T Consensus 256 ~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~-~~g~~~~~~g~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~g~~~~~ 333 (588)
T 3ics_A 256 ENGAVVRLKSGSVIQTDMLILAIGVQPESSLAK-GAGLALGVRGTIKVNEK-FQTSDPHIYAIGDAIEVKDFVTETETMI 333 (588)
T ss_dssp GGGTEEEETTSCEEECSEEEECSCEEECCHHHH-HTTCCBCGGGCBCCCTT-SBCSSTTEEECGGGBCEEBTTTCCEECC
T ss_pred cCCCEEEECCCCEEEcCEEEEccCCCCChHHHH-hcCceEcCCCCEEECCc-cccCCCCEEEeeeeeecccccCCccccc
Confidence 6 469999999999999999999999988875 35566655443333332 22578999999987521
Q ss_pred cc-cccccceeeehhhccc
Q psy12350 381 PF-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 381 ~~-~~~~~~~~~~a~~~~~ 398 (1129)
++ ..+..||+.+|.++.+
T Consensus 334 ~~~~~A~~~g~~aa~~i~g 352 (588)
T 3ics_A 334 PLAWPANRQGRMLADIIHG 352 (588)
T ss_dssp CCHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHhcC
Confidence 11 1123666666666653
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=230.95 Aligned_cols=285 Identities=16% Similarity=0.194 Sum_probs=190.1
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSG 86 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d 86 (1129)
+..++|+||||||||++||..|++ .+++|+|||+. .+||.|.+... ...++.
T Consensus 12 ~~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~-~~gg~~~~~~~-------------------------~~~~~~ 63 (335)
T 2a87_A 12 HPVRDVIVIGSGPAGYTAALYAAR--AQLAPLVFEGT-SFGGALMTTTD-------------------------VENYPG 63 (335)
T ss_dssp CCCEEEEEECCHHHHHHHHHHHHH--TTCCCEEECCS-SCSCGGGSCSC-------------------------BCCSTT
T ss_pred CCcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecC-CCCCceeccch-------------------------hhhcCC
Confidence 345899999999999999999999 56999999984 78998874111 011111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCce-EEeccccCccceEEecceeeeEEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSM-CIIGIPRDTVGFYLFDLQVRFFLQ 165 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~lv 165 (1129)
++ ......++.+++.++++++++ .+++++ |+.++. .+.|.+ .. .. .....|| +||
T Consensus 64 ~~-------~~~~~~~~~~~l~~~~~~~~v--~~~~~~-v~~i~~----~~~~~v~~~---~~--g~~~~~d-----~lv 119 (335)
T 2a87_A 64 FR-------NGITGPELMDEMREQALRFGA--DLRMED-VESVSL----HGPLKSVVT---AD--GQTHRAR-----AVI 119 (335)
T ss_dssp CT-------TCBCHHHHHHHHHHHHHHTTC--EEECCC-EEEEEC----SSSSEEEEE---TT--SCEEEEE-----EEE
T ss_pred CC-------CCCCHHHHHHHHHHHHHHcCC--EEEEee-EEEEEe----CCcEEEEEe---CC--CCEEEeC-----EEE
Confidence 11 123567899999999998877 777776 877764 134544 22 11 2356789 999
Q ss_pred EecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccc
Q psy12350 166 LMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE 245 (1129)
Q Consensus 166 vAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 245 (1129)
+||| +.|..|++||... +.+ .+.+...+ ....+
T Consensus 120 iAtG--~~~~~~~i~g~~~--~~~-------------~~~~~~~~----------------------------~~~~~-- 152 (335)
T 2a87_A 120 LAMG--AAARYLQVPGEQE--LLG-------------RGVSSCAT----------------------------CDGFF-- 152 (335)
T ss_dssp ECCC--EEECCCCCTHHHH--TBT-------------TTEESCHH----------------------------HHGGG--
T ss_pred ECCC--CCccCCCCCchHh--ccC-------------CceEEeec----------------------------cchhh--
Confidence 9999 6778888876321 111 01111000 00001
Q ss_pred ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc-------CCCC--eEEcCCceEEcCCc
Q psy12350 246 FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR-------FPNN--VVKKPDIAELTPTG 316 (1129)
Q Consensus 246 ~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~-------~~~~--i~~~~~v~~~~~~~ 316 (1129)
...++++| ||+|.+|+|+|..|++.+.+|++++|++.+.... .... +..+..|+++++++
T Consensus 153 ~~~~~v~V-----------iG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~~~~~~~~~~~~~gV~v~~~~~v~~i~~~~ 221 (335)
T 2a87_A 153 FRDQDIAV-----------IGGGDSAMEEATFLTRFARSVTLVHRRDEFRASKIMLDRARNNDKIRFLTNHTVVAVDGDT 221 (335)
T ss_dssp GTTCEEEE-----------ECSSHHHHHHHHHHTTTCSEEEEECSSSSCSSCTTHHHHHHHCTTEEEECSEEEEEEECSS
T ss_pred cCCCEEEE-----------ECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCccHHHHHHHhccCCcEEEeCceeEEEecCC
Confidence 12344444 7999999999999999999999999987653211 0123 34456788887654
Q ss_pred ----eEEc---CC--CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc---ccc
Q psy12350 317 ----VRFQ---DG--SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP---FLH 384 (1129)
Q Consensus 317 ----v~~~---dg--~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~---~~~ 384 (1129)
|.++ +| +++++|.||+|+|++++.++++. ++..+++..+....+.+.++.|++|++|.....+ ...
T Consensus 222 ~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~--~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~ 299 (335)
T 2a87_A 222 TVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVRE--AIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYRQAVT 299 (335)
T ss_dssp SCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTBT--TBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCCCHHH
T ss_pred cEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhhc--ccccCCCccEEeCCCCCccCCCCEEEeeecCCccHHHHHH
Confidence 7776 45 46799999999999999999862 4556555544444444457899999999886432 122
Q ss_pred cccceeeehhhcccccccc
Q psy12350 385 ESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~ 403 (1129)
...|++.+|.++...+.++
T Consensus 300 A~~~g~~aA~~i~~~l~~~ 318 (335)
T 2a87_A 300 AAGSGCAAAIDAERWLAEH 318 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHhhcC
Confidence 3477778888777665443
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-22 Score=231.26 Aligned_cols=292 Identities=13% Similarity=0.192 Sum_probs=189.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcc----cCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQ----TDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIME 83 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~----~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~ 83 (1129)
..++|+||||||+|+++|..|++ .+++|+|||+ ...+||.|.+.. ....
T Consensus 7 ~~~~vvIIG~G~aGl~~A~~l~~--~g~~v~lie~~~~~~~~~gg~~~~~~-------------------------~~~~ 59 (333)
T 1vdc_A 7 HNTRLCIVGSGPAAHTAAIYAAR--AELKPLLFEGWMANDIAPGGQLTTTT-------------------------DVEN 59 (333)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSBTTBCTTCGGGGCS-------------------------EECC
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeccCccccCCCceeeecc-------------------------cccc
Confidence 35799999999999999999999 5699999999 566787776310 0111
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeE
Q psy12350 84 LSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163 (1129)
Q Consensus 84 ~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 163 (1129)
++.|| ......++.+++.+++++.++ .+++++ |+.++... +.|. +.. ......|| +
T Consensus 60 ~~~~~-------~~~~~~~~~~~l~~~~~~~gv--~~~~~~-v~~i~~~~---~~~~--v~~----~~~~~~~~-----~ 115 (333)
T 1vdc_A 60 FPGFP-------EGILGVELTDKFRKQSERFGT--TIFTET-VTKVDFSS---KPFK--LFT----DSKAILAD-----A 115 (333)
T ss_dssp STTCT-------TCEEHHHHHHHHHHHHHHTTC--EEECCC-CCEEECSS---SSEE--EEC----SSEEEEEE-----E
T ss_pred CCCCc-------cCCCHHHHHHHHHHHHHHCCC--EEEEeE-EEEEEEcC---CEEE--EEE----CCcEEEcC-----E
Confidence 22221 123567889999999988876 677776 88776521 2233 332 12456788 9
Q ss_pred EEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccc
Q psy12350 164 LQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDF 243 (1129)
Q Consensus 164 lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 243 (1129)
||+||| +.|..|++||..... + .+...+.++..+ ....+
T Consensus 116 vv~A~G--~~~~~~~~~g~~~~~--~---------~~~~~~~~~~~~----------------------------~~~~~ 154 (333)
T 1vdc_A 116 VILAIG--AVAKRLSFVGSGEVL--G---------GFWNRGISACAV----------------------------CDGAA 154 (333)
T ss_dssp EEECCC--EEECCCCCBTCSSSS--S---------CCBTTTEESCHH----------------------------HHTTS
T ss_pred EEECCC--CCcCCCCCCCccccc--c---------ccccCcEEEecc----------------------------Cccch
Confidence 999999 567788777632100 0 000011111100 00011
Q ss_pred ccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc-------cCCCCe--EEcCCceEEcC
Q psy12350 244 TEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL-------RFPNNV--VKKPDIAELTP 314 (1129)
Q Consensus 244 ~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~-------~~~~~i--~~~~~v~~~~~ 314 (1129)
.....++++| ||+|.+|+|+|..|++.+.+|++++|++.+... .....| ..+..|+++++
T Consensus 155 ~~~~~~~v~V-----------vG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 223 (333)
T 1vdc_A 155 PIFRNKPLAV-----------IGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYG 223 (333)
T ss_dssp GGGTTSEEEE-----------ECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEE
T ss_pred hhcCCCeEEE-----------ECCChHHHHHHHHHHhcCCeEEEEecCCcCCccHHHHHHHHhCCCeeEecCCceEEEeC
Confidence 0012344444 799999999999999999999999998865321 112233 44567888864
Q ss_pred Cc-------eEEc---CC--CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc-
Q psy12350 315 TG-------VRFQ---DG--SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP- 381 (1129)
Q Consensus 315 ~~-------v~~~---dg--~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~- 381 (1129)
++ |.++ +| +++++|.||+|+|++++.++++. ++..+++..+....+.+.++.|++|++|.....+
T Consensus 224 ~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~--~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~ 301 (333)
T 1vdc_A 224 DGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDG--GVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKY 301 (333)
T ss_dssp SSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTT--SSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSC
T ss_pred CCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhhc--cccccCCCCEEechhhcccCCCCEEEeeeccCCCc
Confidence 32 7776 45 46799999999999999998873 3555555544444444456889999999886432
Q ss_pred --ccccccceeeehhhccccccccc
Q psy12350 382 --FLHESCGIKVVNKNVQPLYKHLI 404 (1129)
Q Consensus 382 --~~~~~~~~~~~a~~~~~~~~~~~ 404 (1129)
......|++.+|.++...+.++-
T Consensus 302 ~~~~~A~~~g~~aa~~i~~~l~~~~ 326 (333)
T 1vdc_A 302 RQAITAAGTGCMAALDAEHYLQEIG 326 (333)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHhHHHHHHHHHHHHHhcc
Confidence 23334778888888877665553
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=233.14 Aligned_cols=290 Identities=20% Similarity=0.258 Sum_probs=188.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+||||||||++||..|++ .+++|+|||+++.+||.|... ++. +.+..++.+
T Consensus 13 ~~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~----------------~~~------~~~~~~~~~ 68 (360)
T 3ab1_A 13 DMRDLTIIGGGPTGIFAAFQCGM--NNISCRIIESMPQLGGQLAAL----------------YPE------KHIYDVAGF 68 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHT----------------CTT------SEECCSTTC
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCCCccccc----------------CCC------cccccCCCC
Confidence 45799999999999999999999 669999999999999999731 110 001111111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
+ .....++.+++.++++++++ .++++++|+.++... ...|.+.. .+ .....|| +||+|
T Consensus 69 ~--------~~~~~~~~~~l~~~~~~~~~--~~~~~~~v~~i~~~~--~~~~~v~~---~~--g~~~~~~-----~li~A 126 (360)
T 3ab1_A 69 P--------EVPAIDLVESLWAQAERYNP--DVVLNETVTKYTKLD--DGTFETRT---NT--GNVYRSR-----AVLIA 126 (360)
T ss_dssp S--------SEEHHHHHHHHHHHHHTTCC--EEECSCCEEEEEECT--TSCEEEEE---TT--SCEEEEE-----EEEEC
T ss_pred C--------CCCHHHHHHHHHHHHHHhCC--EEEcCCEEEEEEECC--CceEEEEE---CC--CcEEEee-----EEEEc
Confidence 1 12467889999999988876 788999999987631 11233322 11 2356788 99999
Q ss_pred cccCC-CCCcccccc-chhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccc
Q psy12350 168 QGHVT-LPSKAEMLA-DTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE 245 (1129)
Q Consensus 168 tG~~~-~p~~p~i~g-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 245 (1129)
||..+ .|..|++|| .. .+.+. +.+. .+...+.
T Consensus 127 tG~~~~~~~~~~i~g~~~--~~~~~-------------~v~~----------------------------~~~~~~~--- 160 (360)
T 3ab1_A 127 AGLGAFEPRKLPQLGNID--HLTGS-------------SVYY----------------------------AVKSVED--- 160 (360)
T ss_dssp CTTCSCCBCCCGGGCCCT--TTBTT-------------TEES----------------------------SCSCGGG---
T ss_pred cCCCcCCCCCCCCCCchh--hCcCc-------------eEEE----------------------------ecCCHHH---
Confidence 99543 677777765 21 11110 0000 0011111
Q ss_pred ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc-----C-----C--CCeEEcCCceEEc
Q psy12350 246 FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR-----F-----P--NNVVKKPDIAELT 313 (1129)
Q Consensus 246 ~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~-----~-----~--~~i~~~~~v~~~~ 313 (1129)
...++++| ||+|.+|+|+|..|++.+.+|++++|.+.+.... + . -++.....|++++
T Consensus 161 ~~~~~vvV-----------vG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~ 229 (360)
T 3ab1_A 161 FKGKRVVI-----------VGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTAHEVERARANGTIDVYLETEVASIE 229 (360)
T ss_dssp GTTCEEEE-----------ECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSCSHHHHSSHHHHHHTSEEEESSEEEEEEE
T ss_pred cCCCcEEE-----------ECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCCHHHHHHHHHHhhcCceEEEcCcCHHHhc
Confidence 12344444 7999999999999999999999999987654321 0 0 1234455678886
Q ss_pred CC-----ceEEc--CC--CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc---
Q psy12350 314 PT-----GVRFQ--DG--SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP--- 381 (1129)
Q Consensus 314 ~~-----~v~~~--dg--~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~--- 381 (1129)
++ +|.+. +| +++++|.||+|+|++++.++++. .++..+ +..+....+ +..+.|++|++|.....|
T Consensus 230 ~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~-~~~~~~-~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~ 306 (360)
T 3ab1_A 230 ESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLAR-WDLELY-ENALVVDSH-MKTSVDGLYAAGDIAYYPGKL 306 (360)
T ss_dssp EETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGG-SSCCEE-TTEEECCTT-SBCSSTTEEECSTTEECTTCC
T ss_pred cCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHh-hccccc-cCeeeecCC-CcCCCCCEEEecCccCCCCcc
Confidence 43 47775 78 46799999999999999988863 445554 222222222 225789999999875321
Q ss_pred -c-cccccceeeehhhcccccccc
Q psy12350 382 -F-LHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 382 -~-~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
. .....|++.+|.++.+.+.+.
T Consensus 307 ~~~~~A~~~g~~aa~~i~~~l~~~ 330 (360)
T 3ab1_A 307 KIIQTGLSEATMAVRHSLSYIKPG 330 (360)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred ceeehhHHHHHHHHHHHHhhcCCc
Confidence 1 222367888888887665544
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-22 Score=226.10 Aligned_cols=283 Identities=14% Similarity=0.196 Sum_probs=186.6
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSG 86 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d 86 (1129)
...++|+||||||||++||..|++ .|++|+|||+ ..+||.|.+... +..++.
T Consensus 14 ~~~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~-~~~gg~~~~~~~-------------------------~~~~~~ 65 (319)
T 3cty_A 14 ERDFDVVIVGAGAAGFSAAVYAAR--SGFSVAILDK-AVAGGLTAEAPL-------------------------VENYLG 65 (319)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEES-SSTTGGGGGCSC-------------------------BCCBTT
T ss_pred cCCCcEEEECcCHHHHHHHHHHHh--CCCcEEEEeC-CCCCccccccch-------------------------hhhcCC
Confidence 345799999999999999999999 5689999999 578998874110 001111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
| ......++.+++.++++++++ .+++ ++|+.++... +.|.+ .. . .....|| +||+
T Consensus 66 ~--------~~~~~~~~~~~~~~~~~~~~v--~~~~-~~v~~i~~~~---~~~~v--~~--~--~~~~~~~-----~li~ 120 (319)
T 3cty_A 66 F--------KSIVGSELAKLFADHAANYAK--IREG-VEVRSIKKTQ---GGFDI--ET--N--DDTYHAK-----YVII 120 (319)
T ss_dssp B--------SSBCHHHHHHHHHHHHHTTSE--EEET-CCEEEEEEET---TEEEE--EE--S--SSEEEEE-----EEEE
T ss_pred C--------cccCHHHHHHHHHHHHHHcCC--EEEE-eeEEEEEEeC---CEEEE--EE--C--CCEEEeC-----EEEE
Confidence 1 123556888999998988876 5666 6788776521 22333 22 1 2356788 9999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||| +.|..|++||... +.+ .+.+... ..+.. ..
T Consensus 121 AtG--~~~~~~~i~g~~~--~~~-------------~~~~~~~-----------------------------~~~~~-~~ 153 (319)
T 3cty_A 121 TTG--TTHKHLGVKGESE--YFG-------------KGTSYCS-----------------------------TCDGY-LF 153 (319)
T ss_dssp CCC--EEECCCCCBTTTT--TBT-------------TTEESCH-----------------------------HHHGG-GG
T ss_pred CCC--CCcccCCCCChHH--hCC-------------ceEEEEE-----------------------------ecchh-hc
Confidence 999 6677887766311 100 0110000 00000 01
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc--------cCCCCeEEcCCceEEcCC---
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL--------RFPNNVVKKPDIAELTPT--- 315 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~--------~~~~~i~~~~~v~~~~~~--- 315 (1129)
..++++| ||+|.+|+|+|..|++.+++|++++|.+.+... ...-++.....|+++.++
T Consensus 154 ~~~~v~v-----------iG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~ 222 (319)
T 3cty_A 154 KGKRVVT-----------IGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCENAYVQEIKKRNIPYIMNAQVTEIVGDGKK 222 (319)
T ss_dssp BTSEEEE-----------ECCSHHHHHHHHHHTTTBSEEEEECSSSSCCSCHHHHHHHHHTTCCEECSEEEEEEEESSSS
T ss_pred CCCeEEE-----------ECCCHHHHHHHHHHHhhCCcEEEEEcCCccCCCHHHHHHHhcCCcEEEcCCeEEEEecCCce
Confidence 2344444 799999999999999999999999998765321 111245566778888643
Q ss_pred --ceEEc---CCC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc---cccc
Q psy12350 316 --GVRFQ---DGS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP---FLHE 385 (1129)
Q Consensus 316 --~v~~~---dg~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~---~~~~ 385 (1129)
+|.+. +|+ ++++|.||+|+|++++.+++. ..++..+++..+....+ +.++.|++|++|.....| ...+
T Consensus 223 v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~-~~gl~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~A 300 (319)
T 3cty_A 223 VTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLK-DSGVKLDERGYIVVDSR-QRTSVPGVYAAGDVTSGNFAQIASA 300 (319)
T ss_dssp EEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGT-TSCCCBCTTSCBCCCTT-CBCSSTTEEECSTTBTTCCCCHHHH
T ss_pred EEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHh-hccccccCCccEeCCCC-CccCCCCEEEeecccCcchhhHHHH
Confidence 36775 676 579999999999999999987 45566665444433333 336789999999885432 1223
Q ss_pred ccceeeehhhccccccc
Q psy12350 386 SCGIKVVNKNVQPLYKH 402 (1129)
Q Consensus 386 ~~~~~~~a~~~~~~~~~ 402 (1129)
..||+.+|.++...+.+
T Consensus 301 ~~~g~~aa~~i~~~l~~ 317 (319)
T 3cty_A 301 VGDGCKAALSLYSDSIS 317 (319)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 47888888887765543
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-23 Score=242.10 Aligned_cols=269 Identities=16% Similarity=0.112 Sum_probs=165.7
Q ss_pred CCCCCCCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCcc
Q psy12350 1 MVQDKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKE 80 (1129)
Q Consensus 1 m~~~~~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~ 80 (1129)
||+..+...++|+|||||+||++||.+|++.|...+|+|+|+++.++.... .+++.
T Consensus 1 M~~~~~~~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~------------------------~l~~~ 56 (415)
T 3lxd_A 1 MASEVQAERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERP------------------------PLSKE 56 (415)
T ss_dssp ------CCEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSG------------------------GGGTT
T ss_pred CCCcccCCCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcc------------------------cCCHH
Confidence 665444556899999999999999999999665556999999875421100 01111
Q ss_pred ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEeccee
Q psy12350 81 IMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQV 160 (1129)
Q Consensus 81 ~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 160 (1129)
..... ....++..+..++..+.++ .++++++|+.+++ +.+.+... ......||
T Consensus 57 ~~~~~------------~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~id~-----~~~~v~~~-----~g~~~~~d--- 109 (415)
T 3lxd_A 57 YLARE------------KTFERICIRPAQFWEDKAV--EMKLGAEVVSLDP-----AAHTVKLG-----DGSAIEYG--- 109 (415)
T ss_dssp TTTTS------------SCSGGGBSSCHHHHHHTTE--EEEETCCEEEEET-----TTTEEEET-----TSCEEEEE---
T ss_pred HHcCC------------CCHHHhccCCHHHHHHCCc--EEEeCCEEEEEEC-----CCCEEEEC-----CCCEEEee---
Confidence 10000 0001111112334455555 7888999998876 33444331 22456799
Q ss_pred eeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccc
Q psy12350 161 RFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCS 240 (1129)
Q Consensus 161 ~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 240 (1129)
+||+||| +.|..|++||... .+ .+.... .+.+....
T Consensus 110 --~lvlAtG--~~~~~~~i~g~~~---~~---------------v~~~~~----------------------~~d~~~l~ 145 (415)
T 3lxd_A 110 --KLIWATG--GDPRRLSCVGADL---AG---------------VHAVRT----------------------KEDADRLM 145 (415)
T ss_dssp --EEEECCC--EECCCCBTTSSCC---BT---------------EECCCS----------------------HHHHHHHH
T ss_pred --EEEEccC--CccCCCCCCCccc---cC---------------EEEEcC----------------------HHHHHHHH
Confidence 9999999 7899888877321 11 000000 00000000
Q ss_pred cccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC---------------CCeEE
Q psy12350 241 EDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP---------------NNVVK 305 (1129)
Q Consensus 241 ~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~---------------~~i~~ 305 (1129)
..+. ...++++| ||+|++|+|+|..+++.|.+|+++++.+.+++...+ -++..
T Consensus 146 ~~~~-~~~~~vvV-----------iGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~ 213 (415)
T 3lxd_A 146 AELD-AGAKNAVV-----------IGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRT 213 (415)
T ss_dssp HHHH-TTCCEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHhh-hcCCeEEE-----------ECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEE
Confidence 0010 00234444 799999999999999999999999999877653222 15667
Q ss_pred cCCceEEcCC-----ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc
Q psy12350 306 KPDIAELTPT-----GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY 380 (1129)
Q Consensus 306 ~~~v~~~~~~-----~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~ 380 (1129)
++.|++++++ +|.++||+++++|.||+|+|++++.++++ ..++..+....++-+. .+++|++|++|.....
T Consensus 214 ~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~-~~gl~~~~gi~vd~~~---~t~~~~iyA~GD~a~~ 289 (415)
T 3lxd_A 214 GAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALI-SAGASGGNGVDVDEFC---RTSLTDVYAIGDCAAH 289 (415)
T ss_dssp TCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESCHHHH-HTTCCCSSSEECCTTC---BCSSTTEEECGGGEEE
T ss_pred CCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccChHHHH-hCCCCcCCCEEECCCC---CcCCCCEEEEEeeeee
Confidence 8889998753 47889999999999999999999988765 2344444221222222 2478999999987543
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-22 Score=238.48 Aligned_cols=207 Identities=14% Similarity=0.155 Sum_probs=127.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCC------------CceEEEEcccCCcCceEecCCCCCCCCCCCCccCccccccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGS------------GFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTN 76 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~------------~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~ 76 (1129)
.+||+||||||+||++|..|.+.+. +.....|||.+..+ |. ...+|++.+++
T Consensus 39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~--Wh--------------~g~~~p~~~~q 102 (501)
T 4b63_A 39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFA--WH--------------SGMLVPGSKMQ 102 (501)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCC--SS--------------GGGCCTTCBCS
T ss_pred cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCC--cC--------------CCCCCCCcccc
Confidence 3799999999999999999987432 22344555554443 32 11234444443
Q ss_pred CC--ccccccCC---------C--------CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeecccccc--
Q psy12350 77 LP--KEIMELSG---------Y--------HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLIN-- 135 (1129)
Q Consensus 77 ~~--~~~~~~~d---------~--------~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~-- 135 (1129)
++ +++..+.| | +++. ....||++.++.+|++.+|++|+. +|+|+++|++|+.....
T Consensus 103 ~~fl~Dlvtl~~P~s~~sf~~yl~~~~rl~~f~~-~~~~~p~r~E~~~Yl~~~A~~~~~--~vrf~~~V~~v~~~~~~~~ 179 (501)
T 4b63_A 103 ISFIKDLATLRDPRSSFTFLNYLHQKGRLIHFTN-LSTFLPARLEFEDYMRWCAQQFSD--VVAYGEEVVEVIPGKSDPS 179 (501)
T ss_dssp SCGGGSSSTTTCTTCTTSHHHHHHHHTCHHHHHT-TCCSCCBHHHHHHHHHHHHHTTGG--GEEESEEEEEEEEECSSTT
T ss_pred ccchhhhccccCCCCccchHHHHHHhCCccCCcc-ccCCCCCHHHHHHHHHHHHHHcCC--ceEcceEEEeecccccccc
Confidence 32 11111110 0 1111 134589999999999999999864 89999999999763321
Q ss_pred ---CCCCceEEeccccCccceEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhh
Q psy12350 136 ---IEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLN 212 (1129)
Q Consensus 136 ---~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 212 (1129)
.+.|.|++.+...+......++ .||+||| ..|++|++++ +.| +..|+..|..
T Consensus 180 ~~~~~~~~V~~~~~~~g~~~~~~ar-----~vVlatG--~~P~iP~~~~-----~~g-------------~v~Hss~y~~ 234 (501)
T 4b63_A 180 SSVVDFFTVRSRNVETGEISARRTR-----KVVIAIG--GTAKMPSGLP-----QDP-------------RIIHSSKYCT 234 (501)
T ss_dssp SSCBCEEEEEEEETTTCCEEEEEEE-----EEEECCC--CEECCCTTSC-----CCT-------------TEEEGGGHHH
T ss_pred ccccceEEEEEecCCCceEEEEEeC-----EEEECcC--CCCCCCCCCC-----CCc-------------ceeecccccc
Confidence 1236777666555555555666 9999999 6677775532 111 2244444311
Q ss_pred cccccccCCCCCCccchhcccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhccc--ccEEEEccc
Q psy12350 213 SLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTE--ATTVFLSHH 290 (1129)
Q Consensus 213 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~--~~~V~lv~r 290 (1129)
+.. ....+.+ ++|+|+| ||+|.||+|++..|++. +.+|+++.|
T Consensus 235 ~~~---------------------~~~~~~~---~gKrV~V-----------VG~G~SA~ei~~~L~~~~~~~~v~~~~R 279 (501)
T 4b63_A 235 TLP---------------------ALLKDKS---KPYNIAV-----------LGSGQSAAEIFHDLQKRYPNSRTTLIMR 279 (501)
T ss_dssp HHH---------------------HHSCCTT---SCCEEEE-----------ECCSHHHHHHHHHHHHHSTTCEEEEECS
T ss_pred chh---------------------hcccccc---CCcEEEE-----------ECCcHHHHHHHHHHHhcCCCceEEEEeC
Confidence 100 0112222 3455555 79999999999999865 689999999
Q ss_pred cCCc
Q psy12350 291 SEHV 294 (1129)
Q Consensus 291 ~~~~ 294 (1129)
++.+
T Consensus 280 ~~~~ 283 (501)
T 4b63_A 280 DSAM 283 (501)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 8643
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-22 Score=237.66 Aligned_cols=259 Identities=14% Similarity=0.164 Sum_probs=164.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||+|||||+|||+||.+|++.+++++|+|||+++.+|.... + .+.|. ....
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~-----~---------~~~~~------~~~~-------- 54 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSG-----G---------LSAYF------NHTI-------- 54 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC--------------------------------------
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCc-----c---------chhhh------cCCC--------
Confidence 699999999999999999999766899999999887762110 0 00000 0000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
....++..+..+...++++ .++++++|+.++. +...+.+. ..+......|| +||+|||
T Consensus 55 --------~~~~~~~~~~~~~~~~~gi--~~~~~~~V~~id~-----~~~~v~v~--~~~~~~~~~~d-----~lviAtG 112 (452)
T 3oc4_A 55 --------NELHEARYITEEELRRQKI--QLLLNREVVAMDV-----ENQLIAWT--RKEEQQWYSYD-----KLILATG 112 (452)
T ss_dssp --------------CCCCHHHHHHTTE--EEECSCEEEEEET-----TTTEEEEE--ETTEEEEEECS-----EEEECCC
T ss_pred --------CCHHHhhcCCHHHHHHCCC--EEEECCEEEEEEC-----CCCEEEEE--ecCceEEEEcC-----EEEECCC
Confidence 0001111111233345555 7788999999876 33444443 12234567789 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccc-c-cc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFT-E-FR 247 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~-~~ 247 (1129)
+.|..|++||.....+ .... .+ .....+. . ..
T Consensus 113 --~~p~~p~i~g~~~~~v------------------~~~~----------------------~~----~~~~~~~~~~~~ 146 (452)
T 3oc4_A 113 --ASQFSTQIRGSQTEKL------------------LKYK----------------------FL----SGALAAVPLLEN 146 (452)
T ss_dssp --CCBCCCCCBTTTCTTE------------------EEGG----------------------GC----C----CCHHHHT
T ss_pred --cccCCCCCCCCCCCCE------------------EEeC----------------------CH----HHHHHHHHHHhc
Confidence 7899998877321100 0000 00 0111111 0 11
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC---------------CeEEcCCceEE
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------------NVVKKPDIAEL 312 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------------~i~~~~~v~~~ 312 (1129)
.++++| ||+|++|+|+|..+++.|.+|+++++.+.+++..++. ++..++.|+++
T Consensus 147 ~~~vvV-----------iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i 215 (452)
T 3oc4_A 147 SQTVAV-----------IGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGI 215 (452)
T ss_dssp CSEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEE
T ss_pred CCEEEE-----------ECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 233333 8999999999999999999999999998876642211 45667889988
Q ss_pred c--CCc--eEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccc
Q psy12350 313 T--PTG--VRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYR 379 (1129)
Q Consensus 313 ~--~~~--v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~ 379 (1129)
+ +++ |.+.+| ++++|.||+|||++++.++++.. +..+++..+....+ +.+++|++|++|....
T Consensus 216 ~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p~~~~l~~~--~~~~~~g~i~vd~~-~~t~~~~IyA~GD~~~ 282 (452)
T 3oc4_A 216 EETANGIVLETSEQ-EISCDSGIFALNLHPQLAYLDKK--IQRNLDQTIAVDAY-LQTSVPNVFAIGDCIS 282 (452)
T ss_dssp EECSSCEEEEESSC-EEEESEEEECSCCBCCCSSCCTT--SCBCTTSCBCCCTT-CBCSSTTEEECGGGBC
T ss_pred EccCCeEEEEECCC-EEEeCEEEECcCCCCChHHHHhh--hccCCCCCEEECcC-ccCCCCCEEEEEeeEE
Confidence 7 333 556666 89999999999999999998742 55555443333332 2257899999998754
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-22 Score=226.14 Aligned_cols=285 Identities=15% Similarity=0.193 Sum_probs=189.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEE-EcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTT-FEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v-~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.+||+|||||+|||+||..|++ .+++|+| +|| +.+||.|.+... ...++.+
T Consensus 4 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~li~e~-~~~gG~~~~~~~-------------------------~~~~~~~ 55 (315)
T 3r9u_A 4 MLDVAIIGGGPAGLSAGLYATR--GGLKNVVMFEK-GMPGGQITSSSE-------------------------IENYPGV 55 (315)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--HTCSCEEEECS-SSTTGGGGGCSC-------------------------BCCSTTC
T ss_pred CceEEEECCCHHHHHHHHHHHH--CCCCeEEEEeC-CCCCceeeeece-------------------------eccCCCC
Confidence 4799999999999999999999 5699999 999 779999985111 1111111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
+...+..++.+|++++++++++ .++++ +|+.+ ... ..+.|.+.+. .+. .+.|| +||+|
T Consensus 56 -------~~~~~~~~~~~~~~~~~~~~~v--~~~~~-~v~~i-~~~-~~~~~~v~~~---~~~--~~~~d-----~lvlA 113 (315)
T 3r9u_A 56 -------AQVMDGISFMAPWSEQCMRFGL--KHEMV-GVEQI-LKN-SDGSFTIKLE---GGK--TELAK-----AVIVC 113 (315)
T ss_dssp -------CSCBCHHHHHHHHHHHHTTTCC--EEECC-CEEEE-EEC-TTSCEEEEET---TSC--EEEEE-----EEEEC
T ss_pred -------CCCCCHHHHHHHHHHHHHHcCc--EEEEE-EEEEE-ecC-CCCcEEEEEe---cCC--EEEeC-----EEEEe
Confidence 1245778999999999999987 67777 78777 421 0023432222 222 67899 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| +.|+.|++||... +.+ ++.+...+ ..... ..
T Consensus 114 tG--~~~~~~~~~g~~~--~~~-------------~~~~~~~~---------------------------~~~~~---~~ 146 (315)
T 3r9u_A 114 TG--SAPKKAGFKGEDE--FFG-------------KGVSTCAT---------------------------CDGFF---YK 146 (315)
T ss_dssp CC--EEECCCCCBTTTT--TBT-------------TTEESCHH---------------------------HHGGG---GT
T ss_pred eC--CCCCCCCCCChhh--cCC-------------CeEEeeec---------------------------ccccc---cC
Confidence 99 6788888876321 111 11111110 00000 12
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc-------CCC--CeEEcCCceEEcCCc--
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR-------FPN--NVVKKPDIAELTPTG-- 316 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~-------~~~--~i~~~~~v~~~~~~~-- 316 (1129)
.++++| ||+|.+|+|+|..|++.+.+|+++++.+.+.... ... ++..++.|++++.+.
T Consensus 147 ~~~v~v-----------iG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~ 215 (315)
T 3r9u_A 147 NKEVAV-----------LGGGDTALEEALYLANICSKIYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMG 215 (315)
T ss_dssp TSEEEE-----------ECCBHHHHHHHHHHHTTSSEEEEECSSSSCBSCHHHHHHHHHCTTEEEECSCEEEEEEEETTE
T ss_pred cCEEEE-----------ECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCCCHHHHHHHHhcCCeEEEeCcEEEEEEcCCCc
Confidence 344444 7999999999999999999999999988653210 012 445577788886543
Q ss_pred ---eEEc--CCC--EeecCEEEEcccccccCCCCCC--CCC-eEeecCcccccccccccCCCCCeEEeccccc-c--ccc
Q psy12350 317 ---VRFQ--DGS--YEQVDIILYCTGYTYRYPFLHE--SCG-IKVVNKNVQPLYKHLINIEHPSMCIIGYTYR-Y--PFL 383 (1129)
Q Consensus 317 ---v~~~--dg~--~~~~D~VI~atG~~~~~~~l~~--~~~-~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~-~--~~~ 383 (1129)
|++. +|+ ++++|.||+|+|++++.+++.. ..+ +..+++..+.... .+..+.|++|.+|.... . ...
T Consensus 216 ~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~-~~~t~~~~v~a~GD~~~~~~~~~~ 294 (315)
T 3r9u_A 216 VAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDL-KMQTSVAGLFAAGDLRKDAPKQVI 294 (315)
T ss_dssp EEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCT-TCBCSSTTEEECGGGBTTCCCCHH
T ss_pred EEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCC-CcccCCCCEEEeecccCCchhhhh
Confidence 7776 886 6799999999999999988764 133 5555544333332 22357899999998852 1 223
Q ss_pred ccccceeeehhhccccccc
Q psy12350 384 HESCGIKVVNKNVQPLYKH 402 (1129)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~ 402 (1129)
....|++.+|.++...+.+
T Consensus 295 ~A~~~g~~aa~~i~~~l~~ 313 (315)
T 3r9u_A 295 CAAGDGAVAALSAMAYIES 313 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhHHHHHHHHHHHHHh
Confidence 3447888888887766543
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-22 Score=228.91 Aligned_cols=282 Identities=16% Similarity=0.171 Sum_probs=188.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+|||||+|||+||..|++ .+++|+|||++ +||.|.+.. ....++.+
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~--~gg~~~~~~-------------------------~~~~~~~~- 64 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSAR--YMLKTLVIGET--PGGQLTEAG-------------------------IVDDYLGL- 64 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS--TTGGGGGCC-------------------------EECCSTTS-
T ss_pred ccCEEEECccHHHHHHHHHHHH--CCCcEEEEecc--CCCeecccc-------------------------cccccCCC-
Confidence 4799999999999999999999 56999999997 999998411 01111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
...+..++.+|+.++++++++ .+++ ++|+.++... +.|.+.. .......|| +||+||
T Consensus 65 -------~~~~~~~~~~~~~~~~~~~~v--~~~~-~~v~~i~~~~---~~~~v~~-----~~g~~~~~d-----~lvlAt 121 (323)
T 3f8d_A 65 -------IEIQASDMIKVFNKHIEKYEV--PVLL-DIVEKIENRG---DEFVVKT-----KRKGEFKAD-----SVILGI 121 (323)
T ss_dssp -------TTEEHHHHHHHHHHHHHTTTC--CEEE-SCEEEEEEC-----CEEEEE-----SSSCEEEEE-----EEEECC
T ss_pred -------CCCCHHHHHHHHHHHHHHcCC--EEEE-EEEEEEEecC---CEEEEEE-----CCCCEEEcC-----EEEECc
Confidence 124567899999999999887 6777 8888887631 2333322 122456789 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|..|++||... +.+ .+.+...+ ..... ...
T Consensus 122 G--~~~~~~~i~g~~~--~~~-------------~~~~~~~~---------------------------~~~~~---~~~ 154 (323)
T 3f8d_A 122 G--VKRRKLGVPGEQE--FAG-------------RGISYCSV---------------------------ADAPL---FKN 154 (323)
T ss_dssp C--CEECCCCCTTTTT--TBT-------------TTEESCHH---------------------------HHGGG---GTT
T ss_pred C--CCCccCCCCchhh--hcC-------------CceEEecc---------------------------CCHhH---cCC
Confidence 9 6688888876321 111 11111000 01111 123
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc-------cCCCC--eEEcCCceEEcCC----
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL-------RFPNN--VVKKPDIAELTPT---- 315 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~-------~~~~~--i~~~~~v~~~~~~---- 315 (1129)
++++| ||+|.+|+|+|..|++.+.+|+++++.+.+... ..... +..+..|++++++
T Consensus 155 ~~v~v-----------vG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~ 223 (323)
T 3f8d_A 155 RVVAV-----------IGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVK 223 (323)
T ss_dssp CEEEE-----------ECCSHHHHHHHHHHHHHSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESSSEE
T ss_pred CEEEE-----------ECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCcCHHHHHHHHhCCCcEEEeCCEEEEEeccCcee
Confidence 44444 799999999999999999999999998876541 01113 4445568888755
Q ss_pred ceEEcC---CC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc---c--cccc
Q psy12350 316 GVRFQD---GS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY---P--FLHE 385 (1129)
Q Consensus 316 ~v~~~d---g~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~---~--~~~~ 385 (1129)
+|.+.| |+ ++++|.||+|+|++++.++++ ..++..+++..+....+ +..+.|++|++|..... | ....
T Consensus 224 ~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~-~~g~~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~~~A 301 (323)
T 3f8d_A 224 QVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAK-SNGIETDTNGYIKVDEW-MRTSVPGVFAAGDCTSAWLGFRQVITA 301 (323)
T ss_dssp EEEEEETTTCCEEEEECSEEEECCCEECCHHHHH-HTTCCBCTTSSBCCCTT-CBCSSTTEEECSTTBSTTTTCCCHHHH
T ss_pred EEEEEECCCCceEEEEcCEEEEEECCCCChhHHh-hcCeeecCCCcEecCCC-ceecCCCEEEcceecCCCCcccceeeh
Confidence 377876 77 679999999999999988876 34455555443332222 22578999999987653 1 2333
Q ss_pred ccceeeehhhcccccccc
Q psy12350 386 SCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 386 ~~~~~~~a~~~~~~~~~~ 403 (1129)
..||+.+|.++...+.++
T Consensus 302 ~~~g~~aa~~i~~~l~~~ 319 (323)
T 3f8d_A 302 VAQGAVAATSAYRYVTEK 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHh
Confidence 478888888877665443
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-22 Score=227.44 Aligned_cols=283 Identities=12% Similarity=0.189 Sum_probs=170.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
+.+||+|||||||||+||.+|++ .|++|+|||+. ..||.|.+ || ++. ...+..++.|
T Consensus 3 ~~yDvvIIG~GpAGl~AA~~la~--~g~~v~liE~~-~~gg~~~~----G~----------~~~------~~~i~~~~g~ 59 (314)
T 4a5l_A 3 NIHDVVIIGSGPAAHTAAIYLGR--SSLKPVMYEGF-MAGGVAAG----GQ----------LTT------TTIIENFPGF 59 (314)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCS-SGGGCCTT----CG----------GGG------SSEECCSTTC
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCCEEEEecC-CCCCcccC----CC----------cCC------hHHhhhccCC
Confidence 45899999999999999999999 66999999995 56777652 21 111 0111223222
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
| ...+..++.+++..++++++. .+..+ .|..+.. ......+. ......+.|| +||+|
T Consensus 60 ~-------~~i~~~~l~~~~~~~~~~~~~--~~~~~-~v~~~~~-----~~~~~~~~---~~~~~~~~~~-----~liiA 116 (314)
T 4a5l_A 60 P-------NGIDGNELMMNMRTQSEKYGT--TIITE-TIDHVDF-----STQPFKLF---TEEGKEVLTK-----SVIIA 116 (314)
T ss_dssp T-------TCEEHHHHHHHHHHHHHHTTC--EEECC-CEEEEEC-----SSSSEEEE---ETTCCEEEEE-----EEEEC
T ss_pred c-------ccCCHHHHHHHHHHHHhhcCc--EEEEe-EEEEeec-----CCCceEEE---ECCCeEEEEe-----EEEEc
Confidence 2 234667888999998888875 44433 3433332 11111121 1233456788 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| +.|+.|++||.......+ ..... ..........
T Consensus 117 TG--~~~~~~~ipG~~~~~~~~---------------~~~~~----------------------------~~~~~~~~~~ 151 (314)
T 4a5l_A 117 TG--ATAKRMHVPGEDKYWQNG---------------VSACA----------------------------ICDGAVPIFR 151 (314)
T ss_dssp CC--EEECCCCCTTHHHHBTTT---------------EESCH----------------------------HHHTTSGGGT
T ss_pred cc--ccccccCCCccccccccc---------------eeeeh----------------------------hhhhhhhhcC
Confidence 99 789999998843211111 00000 0000111112
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccC-------CCC--eEEcCCceEEcCC---
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRF-------PNN--VVKKPDIAELTPT--- 315 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~-------~~~--i~~~~~v~~~~~~--- 315 (1129)
.++++| ||||++|+|+|..|++.|.+||+++|......... ... ......+.++.+.
T Consensus 152 ~~~vvV-----------iGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 220 (314)
T 4a5l_A 152 NKVLMV-----------VGGGDAAMEEALHLTKYGSKVIILHRRDAFRASKTMQERVLNHPKIEVIWNSELVELEGDGDL 220 (314)
T ss_dssp TSEEEE-----------ECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESSSS
T ss_pred CCeEEE-----------ECCChHHHHHHHHHHHhCCeeeeecccccccccchhhhhhhcccceeeEeeeeeEEEEeeeec
Confidence 344444 79999999999999999999999998775432210 111 1122233334321
Q ss_pred --ceEE-----cCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcc-cccccccccCCCCCeEEecccccccc---cc
Q psy12350 316 --GVRF-----QDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNV-QPLYKHLINIEHPSMCIIGYTYRYPF---LH 384 (1129)
Q Consensus 316 --~v~~-----~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~-~~l~~~~~~~~~p~l~~~G~~~~~~~---~~ 384 (1129)
++.+ .+++++++|.||+|+|.+|+..+|... +..+++.. ++-+ +-++.|++|.+|.....|. ..
T Consensus 221 ~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~~--~~~~~~G~iv~~~---~~Ts~pgIyA~GDv~~~~~~~~~~ 295 (314)
T 4a5l_A 221 LNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQ--VKTADDGYILTEG---PKTSVDGVFACGDVCDRVYRQAIV 295 (314)
T ss_dssp EEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTS--SCBCTTSCBCCBT---TBCSSTTEEECSTTTCSSCCCHHH
T ss_pred cceeEEeecccccceeeccccceEecccccChhHhccc--ceEcCCeeEeCCC---CccCCCCEEEEEeccCCcchHHHH
Confidence 2333 245578999999999999999998743 44444443 2222 2368999999999764432 12
Q ss_pred cccceeeehhhcc
Q psy12350 385 ESCGIKVVNKNVQ 397 (1129)
Q Consensus 385 ~~~~~~~~a~~~~ 397 (1129)
+..|++.+|.++.
T Consensus 296 A~~~G~~AA~~~~ 308 (314)
T 4a5l_A 296 AAGSGCMAALSCE 308 (314)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 2256655555544
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-23 Score=253.10 Aligned_cols=286 Identities=16% Similarity=0.188 Sum_probs=183.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||+|||||+|||+||.+|++.+++++|+|||+++.++... . .++..+ .+
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~-----------------~-------~l~~~~---~~--- 51 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFAN-----------------C-------GLPYHI---SG--- 51 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCG-----------------G-------GHHHHH---TS---
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccc-----------------c-------CchHHh---cC---
Confidence 58999999999999999999976789999999988654100 0 000000 00
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
........+.++++.+++++++ .++++++|+.+++ +...+.+.+...+......|| +||+|||
T Consensus 52 -----~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~V~~id~-----~~~~v~~~~~~~g~~~~~~~d-----~lviAtG 114 (565)
T 3ntd_A 52 -----EIAQRSALVLQTPESFKARFNV--EVRVKHEVVAIDR-----AAKLVTVRRLLDGSEYQESYD-----TLLLSPG 114 (565)
T ss_dssp -----SSCCGGGGBCCCHHHHHHHHCC--EEETTEEEEEEET-----TTTEEEEEETTTCCEEEEECS-----EEEECCC
T ss_pred -----CcCChHHhhccCHHHHHHhcCc--EEEECCEEEEEEC-----CCCEEEEEecCCCCeEEEECC-----EEEECCC
Confidence 0011222344556677777877 7889999999986 445566655444444567899 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccccc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKD 249 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1129)
+.|..|++||.....+ +.... +.......+.+.....+
T Consensus 115 --~~p~~p~ipG~~~~~v------------------~~~~~----------------------~~~~~~l~~~~~~~~~~ 152 (565)
T 3ntd_A 115 --AAPIVPPIPGVDNPLT------------------HSLRN----------------------IPDMDRILQTIQMNNVE 152 (565)
T ss_dssp --EEECCCCCTTCCSTTE------------------ECCSS----------------------HHHHHHHHHHHHHTTCS
T ss_pred --CCCCCCCCCCCCCCCE------------------EEeCC----------------------HHHHHHHHHHHhhCCCC
Confidence 7888888887321110 00000 00000000000001123
Q ss_pred ceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCeEEcCCceEEcC-
Q psy12350 250 KYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNVVKKPDIAELTP- 314 (1129)
Q Consensus 250 ~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i~~~~~v~~~~~- 314 (1129)
+++| ||||++|+|+|..|++.|.+|++++|.+.+++...+ -++.....|+++++
T Consensus 153 ~vvV-----------iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~ 221 (565)
T 3ntd_A 153 HATV-----------VGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQ 221 (565)
T ss_dssp EEEE-----------ECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEE
T ss_pred EEEE-----------ECCCHHHHHHHHHHHhcCCcEEEEEcCCccchhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEecc
Confidence 4444 799999999999999999999999999877663221 14566778888864
Q ss_pred -------------------C---ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeE
Q psy12350 315 -------------------T---GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMC 372 (1129)
Q Consensus 315 -------------------~---~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~ 372 (1129)
+ .++++||+++++|.||+|||++++.++++ ..++.++++..+....+ +.+++|++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~-~~g~~~~~~g~i~vd~~-~~t~~~~Iy 299 (565)
T 3ntd_A 222 VQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLAR-DAGLAIGELGGIKVNAM-MQTSDPAIY 299 (565)
T ss_dssp CCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECCHHHH-HHTCCBCTTSSBCCCTT-CBCSSTTEE
T ss_pred ccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccchHHHH-hCCcccCCCCCEEECCC-cccCCCCEE
Confidence 2 26778999999999999999999988764 34455555443333222 225789999
Q ss_pred Eecccccc-----------cc-cccccceeeehhhcc
Q psy12350 373 IIGYTYRY-----------PF-LHESCGIKVVNKNVQ 397 (1129)
Q Consensus 373 ~~G~~~~~-----------~~-~~~~~~~~~~a~~~~ 397 (1129)
++|..... ++ ..+..||+.+|.++.
T Consensus 300 A~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 336 (565)
T 3ntd_A 300 AVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMF 336 (565)
T ss_dssp ECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHT
T ss_pred EeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhc
Confidence 99987521 11 112366666666665
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-22 Score=231.48 Aligned_cols=291 Identities=14% Similarity=0.220 Sum_probs=177.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCc-ceEEEcccCCcCcccccCCCCC--------CCCCCCCcc----ccccCcc---
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGF-TCTTFEQADNIGGTWLYTEHIG--------CDQYGLPVH----SSMYKSL--- 803 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~-~v~v~E~~~~~GG~w~~~~~~g--------~~~~g~p~~----~~~y~~~--- 803 (1129)
.+++|||+|++|+++|..|.+.| . +|+|||+++ +||+|....... ...+|++.. ...+..+
T Consensus 5 ~~vvIIGaG~aGl~aA~~l~~~g--~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 81 (369)
T 3d1c_A 5 HKVAIIGAGAAGIGMAITLKDFG--ITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFN 81 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHC
T ss_pred CcEEEECcCHHHHHHHHHHHHcC--CCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhcccccccccccc
Confidence 46899999999999999999999 8 999999988 999997421100 000111000 0000000
Q ss_pred ccccc-ccc----ccc---cCCCC--CC-------C---C-----CCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEee
Q psy12350 804 KTNLP-KDL----MEL---CGYGH--KG-------N---A-----DKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHS 858 (1129)
Q Consensus 804 ~~~~~-~~~----~~~---~~~~~--~~-------~---~-----~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs 858 (1129)
..... ..+ ..+ .+..+ .. . + ...+.....|+.+|+.+. |.+|+ +.++|+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~d~vVlAtG~~~~-p~ip~-----~~~~~~ 155 (369)
T 3d1c_A 82 EEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTETYHADYIFVATGDYNF-PKKPF-----KYGIHY 155 (369)
T ss_dssp CSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCCEEEEEEEECCCSTTS-BCCCS-----SSCEEG
T ss_pred ccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCCEEEeCEEEECCCCCCc-cCCCC-----Cceech
Confidence 00000 000 000 00000 00 0 0 001111122333777665 66666 467899
Q ss_pred ccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCC-CCC
Q psy12350 859 RDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCL-PNN 935 (1129)
Q Consensus 859 ~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 935 (1129)
..+.+...+.+|+|+|||+|.+|+|+|..|++.+.+|+++.+.+..+. +.+... +.......+...+ ..+
T Consensus 156 ~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~-------~~~~~~~~l~~~l~~~g 228 (369)
T 3d1c_A 156 SEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVR-------LSPYTRQRLGNVIKQGA 228 (369)
T ss_dssp GGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTS-------CCHHHHHHHHHHHHTTC
T ss_pred hhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCcc-------CCHHHHHHHHHHHhhCC
Confidence 999887778899999999999999999999999999999988654432 111000 0000000011111 123
Q ss_pred -eEEcCC--eeEE--eCCc--EEecCCcEee-ccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEE
Q psy12350 936 -VVLKPD--VAEL--TPTG--VRFQDGSYEQ-VDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFIL 1007 (1129)
Q Consensus 936 -V~~~~~--i~~v--~~~~--V~~~dG~~~~-~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~i 1007 (1129)
|++..+ |.++ ++++ |++.||+++. +|.||+|||++++++++.+ .++. ++++...++.+...+++||||++
T Consensus 229 ~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~-~~~~-~~~g~i~v~~~~~~t~~~~v~a~ 306 (369)
T 3d1c_A 229 RIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQ-QLFV-TTNQDIKLTTHDESTRYPNIFMI 306 (369)
T ss_dssp CEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGGGSHHHH-HHSC-CTTSCCCBCTTSBBSSSTTEEEC
T ss_pred cEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCCccchhhh-hhcc-CCCCCEEechhhcccCCCCeEEe
Confidence 777654 8888 4443 7788998775 6999999999999866653 2233 33443345555567899999999
Q ss_pred cccccc-----chhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q psy12350 1008 GVPRHT-----LLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQ 1048 (1129)
Q Consensus 1008 G~~~~~-----~~~~~~e~qa~~~a~~l~g~~~lp~~~~~~~~~~~ 1048 (1129)
|++... ..+..++.||+++|++|.|+..+|+.++|.+.|..
T Consensus 307 GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~~~~p~~~~~~~~~~~ 352 (369)
T 3d1c_A 307 GATVENDNAKLCYIYKFRARFAVLAHLLTQREGLPAKQEVIENYQK 352 (369)
T ss_dssp STTCCCSSCCCCSHHHHGGGHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred ccccccCCeeEEEEehhhHHHHHHHHHHhcccCCCCcchHHHHHHh
Confidence 998643 23457889999999999999999998777666554
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-23 Score=244.41 Aligned_cols=299 Identities=15% Similarity=0.123 Sum_probs=183.2
Q ss_pred CCcceEEEEcCChHHHHHHHHhhc-CCCCceEEEEc--------ccCCcCceEecCCCCCCCCCCCCccCcccccccccC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTE-PGSGFTCTTFE--------QTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNL 77 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~-~~~~~~v~v~E--------~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~ 77 (1129)
...+||+||||||||++||..|++ .| ++|+|+| +.+.+||+|.+ .+|. |.+...+.. ..
T Consensus 5 ~~~~dvvVIGgG~aGl~aA~~la~~~G--~~V~liE~~~~~~~~~~~~~GG~~~~---~gci----P~k~l~~~a---~~ 72 (495)
T 2wpf_A 5 SKAFDLVVIGAGSGGLEAGWNAATLYG--KRVAVVDVQTSHGPPFYAALGGTCVN---VGCV----PKKLMVTGA---QY 72 (495)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHHHC--CCEEEEESCSSSBTTTBCBTTHHHHH---HSHH----HHHHHHHHH---HH
T ss_pred ccccCEEEECCChhHHHHHHHHHHhcC--CeEEEEecccccccccCCCCCCeeec---CCcc----hHHHHHHHH---HH
Confidence 345899999999999999999998 65 8999999 45789999984 2221 111111100 00
Q ss_pred CccccccCCCCCCCCCCCC--CCCHHHHHHHHHHHHHhc------------CCcceeEeceeeeeeccccccCCCCceEE
Q psy12350 78 PKEIMELSGYHHKGHPDKS--YIAANDVLEYLNDFADNF------------NLRNLCLVNKNVQPLYKHLINIEHPSMCI 143 (1129)
Q Consensus 78 ~~~~~~~~d~~~~~~~~~~--~~~~~~~~~yl~~~~~~~------------~~~~~i~~~~~V~~v~~~~~~~~~~~~~~ 143 (1129)
...+..+.+|.++.. .. ..+..++.++.+++.+++ ++ .++.++ ++.++ .+.+.+
T Consensus 73 ~~~~~~~~~~g~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv--~~~~g~-~~~i~-------~~~v~v 140 (495)
T 2wpf_A 73 MDHLRESAGFGWEFD--GSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGL--DFFLGW-GSLES-------KNVVVV 140 (495)
T ss_dssp HHHHHHHHTTTEECC--GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTE--EEEESE-EEEEE-------TTEEEE
T ss_pred HHHHhHHHhcCcccC--CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCe--EEEEeE-EEEee-------CCEEEE
Confidence 011112222322110 01 235566666665554432 33 444443 33332 345555
Q ss_pred ecccc---CccceEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccC
Q psy12350 144 IGIPR---DTVGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRD 220 (1129)
Q Consensus 144 ~~~~~---~~~~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (1129)
.+... .....+.|| +|||||| +.|..|++||.. .+ ..+..+
T Consensus 141 ~~~~~~~~~~~~~~~~d-----~lViATG--s~p~~p~i~G~~--~~-----------------~~~~~~---------- 184 (495)
T 2wpf_A 141 RETADPKSAVKERLQAD-----HILLATG--SWPQMPAIPGIE--HC-----------------ISSNEA---------- 184 (495)
T ss_dssp ESSSSTTSCEEEEEEEE-----EEEECCC--EEECCCCCTTGG--GC-----------------EEHHHH----------
T ss_pred eecCCccCCCCeEEEcC-----EEEEeCC--CCcCCCCCCCcc--cc-----------------ccHHHH----------
Confidence 42111 003457899 9999999 788888887631 00 000000
Q ss_pred CCCCCccchhcccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhccc---ccEEEEccccCCcccc
Q psy12350 221 ESPVPPVLLKIYFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTE---ATTVFLSHHSEHVKKL 297 (1129)
Q Consensus 221 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~---~~~V~lv~r~~~~~~~ 297 (1129)
..... ..++++| ||+|++|+|+|..|++. |.+||+++|.+.+++.
T Consensus 185 -----------------~~~~~----~~~~vvV-----------iGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~ 232 (495)
T 2wpf_A 185 -----------------FYLPE----PPRRVLT-----------VGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG 232 (495)
T ss_dssp -----------------TTCSS----CCSEEEE-----------ECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT
T ss_pred -----------------Hhhhh----cCCeEEE-----------ECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc
Confidence 00000 1233333 89999999999999999 9999999999887654
Q ss_pred cCC--------------CCeEEcCCceEEcCC-----ceEEcCCCEeecCEEEEcccccccCCCC-CCCCCeEeecCccc
Q psy12350 298 RFP--------------NNVVKKPDIAELTPT-----GVRFQDGSYEQVDIILYCTGYTYRYPFL-HESCGIKVVNKNVQ 357 (1129)
Q Consensus 298 ~~~--------------~~i~~~~~v~~~~~~-----~v~~~dg~~~~~D~VI~atG~~~~~~~l-~~~~~~~~~~~~~~ 357 (1129)
..+ -++..+..|++++++ .|.++||+++++|.||+|+|++++.++| -+..++.++++..+
T Consensus 233 ~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i 312 (495)
T 2wpf_A 233 FDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGV 312 (495)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSB
T ss_pred cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCE
Confidence 222 156668888888643 3778899999999999999999999865 23456666654433
Q ss_pred ccccccccCCCCCeEEecccccc-cc-cccccceeeehhhccc
Q psy12350 358 PLYKHLINIEHPSMCIIGYTYRY-PF-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 358 ~l~~~~~~~~~p~l~~~G~~~~~-~~-~~~~~~~~~~a~~~~~ 398 (1129)
....++ -+++|++|++|..... ++ .....|++.+|.++.+
T Consensus 313 ~Vd~~~-~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g 354 (495)
T 2wpf_A 313 QVDEFS-RTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFG 354 (495)
T ss_dssp CCCTTC-BCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHS
T ss_pred EECCCC-ccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcC
Confidence 332222 2578999999987542 22 1223788888887764
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.3e-22 Score=223.43 Aligned_cols=281 Identities=14% Similarity=0.177 Sum_probs=185.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+||||||||++||..|++ .+++|+|||+ ..+||.|.+... ...++.++
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~-~~~gg~~~~~~~-------------------------~~~~~~~~ 56 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAAR--ANLQPVLITG-MEKGGQLTTTTE-------------------------VENWPGDP 56 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHT--TTCCCEEECC-SSTTGGGGGCSB-------------------------CCCSTTCC
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCcEEEEcc-CCCCceEecchh-------------------------hhhCCCCC
Confidence 5799999999999999999999 5699999997 578998874110 01111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
......++.+++..+++++++ .+++++ |+.++.. .+.|.+ . .+ .....|| +||+||
T Consensus 57 -------~~~~~~~~~~~~~~~~~~~~~--~~~~~~-v~~i~~~---~~~~~v-~---~~--~~~~~~~-----~lv~At 112 (320)
T 1trb_A 57 -------NDLTGPLLMERMHEHATKFET--EIIFDH-INKVDLQ---NRPFRL-N---GD--NGEYTCD-----ALIIAT 112 (320)
T ss_dssp -------SSCBHHHHHHHHHHHHHHTTC--EEECCC-EEEEECS---SSSEEE-E---ES--SCEEEEE-----EEEECC
T ss_pred -------CCCCHHHHHHHHHHHHHHCCC--EEEEee-eeEEEec---CCEEEE-E---eC--CCEEEcC-----EEEECC
Confidence 123567889999999998877 677776 8777652 123333 1 11 2356788 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|..|++||... +.+. +.+... .....+ ...
T Consensus 113 G--~~~~~~~~~g~~~--~~~~-------------~~~~~~----------------------------~~~~~~--~~~ 145 (320)
T 1trb_A 113 G--ASARYLGLPSEEA--FKGR-------------GVSACA----------------------------TSDGFF--YRN 145 (320)
T ss_dssp C--EEECCCCCHHHHH--TBTT-------------TEESCH----------------------------HHHGGG--GTT
T ss_pred C--CCcCCCCCCChHH--hCCc-------------eeEecc----------------------------cCCccc--cCC
Confidence 9 6678888876321 1110 011100 000001 123
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc------------CCCCeEEcCCceEEcCCc
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR------------FPNNVVKKPDIAELTPTG 316 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~------------~~~~i~~~~~v~~~~~~~ 316 (1129)
++++| ||+|.+|+|+|..|++.+.+|++++|.+.+.... ..-++..++.|+++++++
T Consensus 146 ~~v~V-----------iG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~ 214 (320)
T 1trb_A 146 QKVAV-----------IGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQ 214 (320)
T ss_dssp SEEEE-----------ECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHHHHHHHHTSSEEEECSCEEEEEEECS
T ss_pred CeEEE-----------ECCCHHHHHHHHHHHhcCCeEEEEEeCCccccCHHHHHHHHHhcccCCeEEEcCceeEEEEcCC
Confidence 44444 7999999999999999999999999987653210 111345567788886543
Q ss_pred -----eEEcC----C--CEeecCEEEEcccccccCCCCCCCCCeEeecCccccccccc----ccCCCCCeEEeccccccc
Q psy12350 317 -----VRFQD----G--SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHL----INIEHPSMCIIGYTYRYP 381 (1129)
Q Consensus 317 -----v~~~d----g--~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~----~~~~~p~l~~~G~~~~~~ 381 (1129)
|.+++ | +++++|.||+|+|++++.++++. ++..+ +..+....++ ..++.|++|++|.....+
T Consensus 215 ~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~~--~l~~~-~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~ 291 (320)
T 1trb_A 215 MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEG--QLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHI 291 (320)
T ss_dssp SSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGTT--TSCEE-TTEECCCCSSSSCTTBCSSTTEEECGGGGCSS
T ss_pred CceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhcc--ccccc-CceEEECCCcccccccCCCCCEEEcccccCCc
Confidence 77875 5 46799999999999999998873 34444 4433333332 346789999999886532
Q ss_pred ---ccccccceeeehhhccccccc
Q psy12350 382 ---FLHESCGIKVVNKNVQPLYKH 402 (1129)
Q Consensus 382 ---~~~~~~~~~~~a~~~~~~~~~ 402 (1129)
......|++.+|.++...+.+
T Consensus 292 ~~~~~~A~~~g~~aa~~i~~~l~~ 315 (320)
T 1trb_A 292 YRQAITSAGTGCMAALDAERYLDG 315 (320)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred chhhhhhhccHHHHHHHHHHHHHh
Confidence 223347777777777665544
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-22 Score=241.68 Aligned_cols=293 Identities=13% Similarity=0.144 Sum_probs=177.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+||||||||++||+.|++ .|++|+|+||++.+||+|.+ .+|. |.+...+.. ........++.+
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~--~G~~V~liEk~~~~GG~~~~---~gci----Psk~l~~~a---~~~~~~~~~~~~- 70 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAK--AKYNVLMADPKGELGGNCLY---SGCV----PSKTVREVI---QTAWRLTNIANV- 70 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECTTSSSSHHHHH---HSHH----HHHHHHHHH---HHHHHHHHHHCS-
T ss_pred cceEEEECCCHHHHHHHHHHHh--CCCeEEEEECCCCCCCcccc---cCCC----chHHHHHHH---HHHHHHHhcccC-
Confidence 4899999999999999999999 66999999998999999985 2221 111111100 000001111111
Q ss_pred CCCCCCCCCCCHHHHHHHHH------------HHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEe
Q psy12350 89 HKGHPDKSYIAANDVLEYLN------------DFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLF 156 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~------------~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1129)
...+....+..+.+ ...++.++ .+..+ +|..++. ..+.+.. .++......|
T Consensus 71 ------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~~g-~v~~id~-------~~~~V~~-~~g~~~~~~~ 133 (466)
T 3l8k_A 71 ------KIPLDFSTVQDRKDYVQELRFKQHKRNMSQYETL--TFYKG-YVKIKDP-------THVIVKT-DEGKEIEAET 133 (466)
T ss_dssp ------CCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCTTE--EEESE-EEEEEET-------TEEEEEE-TTSCEEEEEE
T ss_pred ------CCCcCHHHHHHHHHhheeccccchHHHHHHhCCC--EEEEe-EEEEecC-------CeEEEEc-CCCcEEEEec
Confidence 01223344443332 22233332 34433 4555543 2233322 1221222789
Q ss_pred cceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 157 DLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 157 d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
| +||+||| +.|..|++||.. .+ ..+..+
T Consensus 134 d-----~lviAtG--~~p~~p~i~G~~--~~-----------------~t~~~~-------------------------- 161 (466)
T 3l8k_A 134 R-----YMIIASG--AETAKLRLPGVE--YC-----------------LTSDDI-------------------------- 161 (466)
T ss_dssp E-----EEEECCC--EEECCCCCTTGG--GS-----------------BCHHHH--------------------------
T ss_pred C-----EEEECCC--CCccCCCCCCcc--ce-----------------EeHHHH--------------------------
Confidence 9 9999999 788888887732 00 000000
Q ss_pred cccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc-CC-----------CCeE
Q psy12350 237 ARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR-FP-----------NNVV 304 (1129)
Q Consensus 237 ~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~-~~-----------~~i~ 304 (1129)
......+. ...++++| ||||++|+|+|..|++.|.+|+++++.+.+++.. .+ -++.
T Consensus 162 ~~~~~~l~-~~~~~vvV-----------iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~v~i~ 229 (466)
T 3l8k_A 162 FGYKTSFR-KLPQDMVI-----------IGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILKLNIK 229 (466)
T ss_dssp HSTTCSCC-SCCSEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHh-hCCCeEEE-----------ECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCEEEEE
Confidence 00000111 01233333 8999999999999999999999999998877644 22 1455
Q ss_pred EcCCceEEcC---Cc--eEEc--CCC--EeecCEEEEcccccccCCC-CCCCCCeEeecCcccccccccccCCCCCeEEe
Q psy12350 305 KKPDIAELTP---TG--VRFQ--DGS--YEQVDIILYCTGYTYRYPF-LHESCGIKVVNKNVQPLYKHLINIEHPSMCII 374 (1129)
Q Consensus 305 ~~~~v~~~~~---~~--v~~~--dg~--~~~~D~VI~atG~~~~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~ 374 (1129)
.+..|+++++ ++ |.++ ||+ ++++|.||+|+|++++.++ +. ..++.++++. +....++ ..+.|++|++
T Consensus 230 ~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~-~~gl~~~~~G-i~vd~~~-~t~~~~Iya~ 306 (466)
T 3l8k_A 230 FNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAR-EIGLSISKTG-IVVDETM-KTNIPNVFAT 306 (466)
T ss_dssp CSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCCTTTG-GGTCCBCSSS-BCCCTTC-BCSSTTEEEC
T ss_pred ECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccccchh-hcCceeCCCC-EeECCCc-cCCCCCEEEE
Confidence 6778888865 33 6677 676 7899999999999999883 33 4566666555 4333322 2578999999
Q ss_pred cccccc-cc-cccccceeeehhhccc
Q psy12350 375 GYTYRY-PF-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 375 G~~~~~-~~-~~~~~~~~~~a~~~~~ 398 (1129)
|..... ++ .....|++.+|.++.+
T Consensus 307 GD~~~~~~~~~~A~~~g~~aa~~i~~ 332 (466)
T 3l8k_A 307 GDANGLAPYYHAAVRMSIAAANNIMA 332 (466)
T ss_dssp GGGTCSCCSHHHHHHHHHHHHHHHHT
T ss_pred EecCCCCccHhHHHHHHHHHHHHHhC
Confidence 987542 22 2233888888888764
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.2e-22 Score=222.01 Aligned_cols=282 Identities=15% Similarity=0.211 Sum_probs=184.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
++|+||||||||++||..|++ .++ +|+|||+ +.+||.|.+... ...++.++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~--~g~~~v~lie~-~~~gg~~~~~~~-------------------------~~~~~~~~ 53 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATR--GGVKNAVLFEK-GMPGGQITGSSE-------------------------IENYPGVK 53 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--TTCSSEEEECS-SSTTCGGGGCSC-------------------------BCCSTTCC
T ss_pred ceEEEECccHHHHHHHHHHHH--CCCCcEEEEcC-CCCCcccccccc-------------------------cccCCCCc
Confidence 689999999999999999999 568 9999999 578998874110 01111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
...+..++.+++.++++++++ .+++ ++|+.++... +.|.+.. .+ .....|| +||+||
T Consensus 54 -------~~~~~~~~~~~l~~~~~~~~v--~~~~-~~v~~i~~~~---~~~~v~~---~~--g~~~~~~-----~vv~At 110 (311)
T 2q0l_A 54 -------EVVSGLDFMQPWQEQCFRFGL--KHEM-TAVQRVSKKD---SHFVILA---ED--GKTFEAK-----SVIIAT 110 (311)
T ss_dssp -------SCBCHHHHHHHHHHHHHTTSC--EEEC-SCEEEEEEET---TEEEEEE---TT--SCEEEEE-----EEEECC
T ss_pred -------ccCCHHHHHHHHHHHHHHcCC--EEEE-EEEEEEEEcC---CEEEEEE---cC--CCEEECC-----EEEECC
Confidence 234677899999999988876 6666 7888887521 2233322 11 2356788 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|..|++||... +.+. +.+...+ .+.. ....
T Consensus 111 G--~~~~~~~~~g~~~--~~~~-------------~~~~~~~-----------------------------~~~~-~~~~ 143 (311)
T 2q0l_A 111 G--GSPKRTGIKGESE--YWGK-------------GVSTCAT-----------------------------CDGF-FYKN 143 (311)
T ss_dssp C--EEECCCCCBTHHH--HBTT-------------TEESCHH-----------------------------HHGG-GGTT
T ss_pred C--CCCCCCCCCChhh--ccCC-------------cEEEeec-----------------------------CChh-hcCC
Confidence 9 6778888876321 1110 0111000 0000 0123
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc-------cCCCCe--EEcCCceEEcCC----
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL-------RFPNNV--VKKPDIAELTPT---- 315 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~-------~~~~~i--~~~~~v~~~~~~---- 315 (1129)
++++| ||+|.+|+|+|..|++.+.+|++++|++.+... .....| ..+..|++++++
T Consensus 144 ~~v~V-----------vG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v 212 (311)
T 2q0l_A 144 KEVAV-----------LGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITLEHAKNNDKIEFLTPYVVEEIKGDASGV 212 (311)
T ss_dssp SEEEE-----------ECCSHHHHHHHHHHHTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEETTEEEEEEEEETTEE
T ss_pred CEEEE-----------ECCCHHHHHHHHHHHhcCCEEEEEeeCCccCCCHHHHHHHhhCCCeEEEeCCEEEEEECCCCcE
Confidence 44444 799999999999999999999999998765311 011234 345568888644
Q ss_pred -ceEEc---CCC--EeecCEEEEcccccccCCCCCCCC---CeEeecCcccccccccccCCCCCeEEecccccc-c--cc
Q psy12350 316 -GVRFQ---DGS--YEQVDIILYCTGYTYRYPFLHESC---GIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY-P--FL 383 (1129)
Q Consensus 316 -~v~~~---dg~--~~~~D~VI~atG~~~~~~~l~~~~---~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~-~--~~ 383 (1129)
+|.++ +|+ ++++|.||+|+|++++.++++... ++..+++..+....+ +.++.|++|++|..... | ..
T Consensus 213 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~ 291 (311)
T 2q0l_A 213 SSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFS-MKTNVQGLFAAGDIRIFAPKQVV 291 (311)
T ss_dssp EEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTT-CBCSSTTEEECSTTBTTCCCCHH
T ss_pred eEEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCc-cccCCCCeEEcccccCcchHHHH
Confidence 46776 676 679999999999999999987431 255554443333332 23578999999988542 1 12
Q ss_pred ccccceeeehhhcccccc
Q psy12350 384 HESCGIKVVNKNVQPLYK 401 (1129)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~ 401 (1129)
....|++.+|.++...+.
T Consensus 292 ~A~~~g~~aa~~i~~~l~ 309 (311)
T 2q0l_A 292 CAASDGATAALSVISYLE 309 (311)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHh
Confidence 233778888877765543
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-22 Score=239.34 Aligned_cols=262 Identities=14% Similarity=0.205 Sum_probs=163.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
+++|+|||||+|||+||..|++.+.+++|+|||+++.+++... .++.....
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~------------------------~~p~~~~~----- 53 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPC------------------------GIPYVVEG----- 53 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCc------------------------CCccccCC-----
Confidence 3799999999999999999999766899999999886543221 00100000
Q ss_pred CCCCCCCCCCCHHHHHHHH-HHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 89 HKGHPDKSYIAANDVLEYL-NDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl-~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
....+++..+. +.+++++++ .++++++|+.++.. .+.+ .. .+......|| +||+|
T Consensus 54 --------~~~~~~~~~~~~~~~~~~~gi--~v~~~~~v~~i~~~-----~~~v--~~--~~g~~~~~~d-----~lviA 109 (449)
T 3kd9_A 54 --------LSTPDKLMYYPPEVFIKKRGI--DLHLNAEVIEVDTG-----YVRV--RE--NGGEKSYEWD-----YLVFA 109 (449)
T ss_dssp --------------------CTHHHHTTC--EEETTCEEEEECSS-----EEEE--EC--SSSEEEEECS-----EEEEC
T ss_pred --------CCCHHHhhhcCHHHHHHhcCc--EEEecCEEEEEecC-----CCEE--EE--CCceEEEEcC-----EEEEC
Confidence 01112223322 334466777 88999999988752 2322 21 2222357799 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| +.|..|++||.... +. ..... .+.+....+.+..+.
T Consensus 110 tG--~~p~~p~i~G~~~~---~v---------------~~~~~----------------------~~~~~~~~~~~~~~~ 147 (449)
T 3kd9_A 110 NG--ASPQVPAIEGVNLK---GV---------------FTADL----------------------PPDALAIREYMEKYK 147 (449)
T ss_dssp CC--EEECCCSCBTTTST---TE---------------ECSCS----------------------THHHHHHHHHHSSSC
T ss_pred CC--CCCCCCCCCCCCCC---CE---------------EEeCC----------------------HHHHHHHHHHHHhcC
Confidence 99 78888888773211 10 00000 000000000010112
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCeEEcCCceEEc
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNVVKKPDIAELT 313 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i~~~~~v~~~~ 313 (1129)
.++++| ||+|++|+|+|..|++.|.+|++++|.+.+++..++ -++..+..|.+++
T Consensus 148 ~~~vvV-----------iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~v~i~~~~~v~~i~ 216 (449)
T 3kd9_A 148 VENVVI-----------IGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKHVNLRLQEITMKIE 216 (449)
T ss_dssp CCEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTTSEEEESCCEEEEE
T ss_pred CCeEEE-----------ECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCcEEEeCCeEEEEe
Confidence 344444 799999999999999999999999999887654111 1345577888887
Q ss_pred CCc---eEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 314 PTG---VRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 314 ~~~---v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
+++ .++.+|+++++|.||+|+|++++.++++ ..++.++++..+....+ +.++.|++|.+|...
T Consensus 217 ~~~~v~~v~~~g~~i~~D~Vv~a~G~~p~~~l~~-~~gl~~~~~G~i~vd~~-~~t~~~~IyA~GD~~ 282 (449)
T 3kd9_A 217 GEERVEKVVTDAGEYKAELVILATGIKPNIELAK-QLGVRIGETGAIWTNEK-MQTSVENVYAAGDVA 282 (449)
T ss_dssp CSSSCCEEEETTEEEECSEEEECSCEEECCHHHH-HTTCCBCTTSSBCCCTT-CBCSSTTEEECSTTB
T ss_pred ccCcEEEEEeCCCEEECCEEEEeeCCccCHHHHH-hCCccCCCCCCEEECCC-CccCCCCEEEeeeee
Confidence 653 4577888899999999999999988775 35566665443332222 225789999999874
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-22 Score=222.99 Aligned_cols=283 Identities=12% Similarity=0.129 Sum_probs=184.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
++|+||||||||++||..|++ .+++|+|+|+ .+||.|.... . +..+.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~--~g~~v~li~~--~~gG~~~~~~--------------~-----------~~~~~---- 48 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSAR--KGIRTGLMGE--RFGGQILDTV--------------D-----------IENYI---- 48 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHT--TTCCEEEECS--STTGGGGGCC--------------E-----------ECCBT----
T ss_pred CCEEEECcCHHHHHHHHHHHH--CCCcEEEEeC--CCCceecccc--------------c-----------ccccc----
Confidence 689999999999999999999 5689999986 4799987310 0 00111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
...+....++.++++++++++++ .++++++|+.++........|.+... . .....|| +||+|||
T Consensus 49 ----~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~~~~~~~v~~~---~--g~~~~~~-----~lv~AtG 112 (310)
T 1fl2_A 49 ----SVPKTEGQKLAGALKVHVDEYDV--DVIDSQSASKLIPAAVEGGLHQIETA---S--GAVLKAR-----SIIVATG 112 (310)
T ss_dssp ----TBSSEEHHHHHHHHHHHHHTSCE--EEECSCCEEEEECCSSTTCCEEEEET---T--SCEEEEE-----EEEECCC
T ss_pred ----CcCCCCHHHHHHHHHHHHHHcCC--eEEccCEEEEEEecccCCceEEEEEC---C--CCEEEeC-----EEEECcC
Confidence 11134567899999999998876 78899999988653111123444321 1 2356788 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccccc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKD 249 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1129)
+.|..|++||... +.++ +.+...+ ... . ....+
T Consensus 113 --~~~~~~~~~g~~~--~~~~-------------~~~~~~~---------------------------~~~-~--~~~~~ 145 (310)
T 1fl2_A 113 --AKWRNMNVPGEDQ--YRTK-------------GVTYCPH---------------------------CDG-P--LFKGK 145 (310)
T ss_dssp --EEECCCCCTTTTT--TBTT-------------TEESCHH---------------------------HHG-G--GGBTC
T ss_pred --CCcCCCCCCChhh--cccc-------------eeEEecc---------------------------CcH-h--hcCCC
Confidence 5677777766321 1110 0000000 000 0 01234
Q ss_pred ceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc-------cCCCC--eEEcCCceEEcCC-----
Q psy12350 250 KYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL-------RFPNN--VVKKPDIAELTPT----- 315 (1129)
Q Consensus 250 ~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~-------~~~~~--i~~~~~v~~~~~~----- 315 (1129)
+++| ||+|++|+|+|..|++.+.+|++++|.+.+... ..... +..+..|+++.++
T Consensus 146 ~v~V-----------vG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~ 214 (310)
T 1fl2_A 146 RVAV-----------IGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVV 214 (310)
T ss_dssp EEEE-----------ECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHTCTTEEEESSEEEEEEEESSSSEE
T ss_pred EEEE-----------ECCCHHHHHHHHHHHHhCCEEEEEEeCcccCccHHHHHHHhhCCCeEEecCCceEEEEcCCCcEE
Confidence 4444 799999999999999999999999998765211 01123 3445568888654
Q ss_pred ceEEcC---CC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc---cccccc
Q psy12350 316 GVRFQD---GS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP---FLHESC 387 (1129)
Q Consensus 316 ~v~~~d---g~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~---~~~~~~ 387 (1129)
+|.+++ |+ ++++|.||+|+|++++.+++.. . +..+++..+....++ .++.|++|++|.....| ......
T Consensus 215 ~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~-~-l~~~~~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~A~~ 291 (310)
T 1fl2_A 215 GLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEG-A-VERNRMGEIIIDAKC-ETNVKGVFAAGDCTTVPYKQIIIATG 291 (310)
T ss_dssp EEEEEETTTCCEEEEECSEEEECSCEEESCGGGTT-T-SCBCTTSCBCCCTTC-BCSSTTEEECSTTBSCSSCCHHHHHH
T ss_pred EEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhc-c-ccccCCCcEEcCCCC-ccCCCCEEEeecccCCcchhhhhhHh
Confidence 467764 54 5799999999999999988874 2 445444433333332 26789999999876543 233347
Q ss_pred ceeeehhhccccccc
Q psy12350 388 GIKVVNKNVQPLYKH 402 (1129)
Q Consensus 388 ~~~~~a~~~~~~~~~ 402 (1129)
|++.+|.++...+.+
T Consensus 292 ~g~~aa~~i~~~l~~ 306 (310)
T 1fl2_A 292 EGAKASLSAFDYLIR 306 (310)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 777778777665443
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-22 Score=239.41 Aligned_cols=290 Identities=15% Similarity=0.202 Sum_probs=174.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+||||||||++||++|++ .+++|+|||++ .+||+|.+ .+|. |.+ .++.... ....+.....|.
T Consensus 4 ~~dVvIIGgG~aGl~aA~~l~~--~g~~V~liE~~-~~GG~~~~---~gci----P~k-~l~~~a~--~~~~~~~~~~~g 70 (463)
T 2r9z_A 4 HFDLIAIGGGSGGLAVAEKAAA--FGKRVALIESK-ALGGTCVN---VGCV----PKK-VMWYASH--LAEAVRDAPGFG 70 (463)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CTTHHHHH---HSHH----HHH-HHHHHHH--HHHHHHHGGGGT
T ss_pred cCcEEEECCCHHHHHHHHHHHh--CCCcEEEEcCC-CCCCcCcC---cCch----hHH-HHHHHHH--HHHHHhhhhhcC
Confidence 5899999999999999999999 67999999997 79999984 2221 111 1111000 000001111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-----------hcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFAD-----------NFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~-----------~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
++. .....+..++.++.+.+++ +.++ .++.++ ++.++ .+.+.+ + .....||
T Consensus 71 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~-~~~i~-------~~~v~~----~--g~~~~~d 132 (463)
T 2r9z_A 71 VQA--SGGTLDWPRLVAGRDRYIGAINSFWDGYVERLGI--TRVDGH-ARFVD-------AHTIEV----E--GQRLSAD 132 (463)
T ss_dssp BCC--C---CCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESC-EEEEE-------TTEEEE----T--TEEEEEE
T ss_pred ccc--CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEeE-EEEcc-------CCEEEE----C--CEEEEcC
Confidence 111 0112345555555444432 3333 444443 32232 234433 1 2356799
Q ss_pred ceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFA 237 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 237 (1129)
+||+||| +.|..|++||.. .+ ..+..+
T Consensus 133 -----~lviAtG--s~p~~p~i~G~~--~~-----------------~~~~~~--------------------------- 159 (463)
T 2r9z_A 133 -----HIVIATG--GRPIVPRLPGAE--LG-----------------ITSDGF--------------------------- 159 (463)
T ss_dssp -----EEEECCC--EEECCCSCTTGG--GS-----------------BCHHHH---------------------------
T ss_pred -----EEEECCC--CCCCCCCCCCcc--ce-----------------ecHHHH---------------------------
Confidence 9999999 788888887631 00 000000
Q ss_pred ccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCe
Q psy12350 238 RCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNV 303 (1129)
Q Consensus 238 ~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i 303 (1129)
..... ..++++| ||||++|+|+|..|++.|.+|+++++.+.+++...+ -++
T Consensus 160 ~~~~~----~~~~vvV-----------vGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i 224 (463)
T 2r9z_A 160 FALQQ----QPKRVAI-----------IGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIET 224 (463)
T ss_dssp HHCSS----CCSEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred hhhhc----cCCEEEE-----------ECCCHHHHHHHHHHHhcCCEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEE
Confidence 00000 1233333 899999999999999999999999999876543221 145
Q ss_pred EEcCCceEEcCC----ceEEcCCC-EeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEeccc
Q psy12350 304 VKKPDIAELTPT----GVRFQDGS-YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYT 377 (1129)
Q Consensus 304 ~~~~~v~~~~~~----~v~~~dg~-~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~ 377 (1129)
..+..|++++++ .|.++||+ ++++|.||+|+|++++.++|. +..++.++++..+....++ .+++|++|++|..
T Consensus 225 ~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~-~t~~~~Iya~GD~ 303 (463)
T 2r9z_A 225 HLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQ-NTNVPGVYALGDI 303 (463)
T ss_dssp ESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTS-BCSSTTEEECGGG
T ss_pred EeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCC-ccCCCCEEEEeec
Confidence 557778888642 37788998 899999999999999998652 2334555544433322222 2678999999987
Q ss_pred ccc-cc-cccccceeeehhhccc
Q psy12350 378 YRY-PF-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 378 ~~~-~~-~~~~~~~~~~a~~~~~ 398 (1129)
... ++ .....|++.+|.++.+
T Consensus 304 ~~~~~~~~~A~~~g~~aa~~i~g 326 (463)
T 2r9z_A 304 TGRDQLTPVAIAAGRRLAERLFD 326 (463)
T ss_dssp GTSCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCcccHHHHHHHHHHHHHHHcC
Confidence 532 22 1223778888877764
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.1e-22 Score=236.36 Aligned_cols=295 Identities=17% Similarity=0.217 Sum_probs=178.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+||||||||++||..|++ .|++|+||||+ .+||+|.+ .+|. |.+...+.. .....+.....|
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~--~g~~V~liE~~-~~GG~~~n---~gci----P~k~l~~~~---~~~~~~~~~~~~ 76 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAAS--YGAKTLLVEAK-ALGGTCVN---VGCV----PKKVMWYAS---DLATRVSHANEY 76 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH--TSCCEEEEESS-CTTHHHHH---HSHH----HHHHHHHHH---HHHHHHTTTTTT
T ss_pred ccCCEEEEcCCHHHHHHHHHHHH--CCCcEEEEeCC-CcCCcCcc---cCcH----HHHHHHHHH---HHHHHHHhHHhc
Confidence 45899999999999999999999 67999999996 79999984 2221 111111110 000000011111
Q ss_pred CCCCC----CCCCCCCHHHHHHHHHHHH-----------HhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccc
Q psy12350 88 HHKGH----PDKSYIAANDVLEYLNDFA-----------DNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVG 152 (1129)
Q Consensus 88 ~~~~~----~~~~~~~~~~~~~yl~~~~-----------~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (1129)
.+... +.....+...+.++.+.++ ++.++ .+..++ ++.++ .+.+.+.+ .++...
T Consensus 77 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~-~~~i~-------~~~~~v~~-~~g~~~ 145 (479)
T 2hqm_A 77 GLYQNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKV--DVVFGW-ARFNK-------DGNVEVQK-RDNTTE 145 (479)
T ss_dssp TBSTTSCCSGGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTE--EEEEEE-EEECT-------TSCEEEEE-SSSCCE
T ss_pred CcccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeE-EEEee-------CCEEEEEe-CCCcEE
Confidence 11100 0011234445554443333 23333 444443 44443 23444432 222223
Q ss_pred eEEecceeeeEEEEecccCCCCCcc-ccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhc
Q psy12350 153 FYLFDLQVRFFLQLMQGHVTLPSKA-EMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKI 231 (1129)
Q Consensus 153 ~~~~d~~~~~~lvvAtG~~~~p~~p-~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 231 (1129)
...|| +||+||| +.|..| ++||... . ..+..+
T Consensus 146 ~~~~d-----~lviAtG--s~p~~p~~i~g~~~-~------------------~~~~~~--------------------- 178 (479)
T 2hqm_A 146 VYSAN-----HILVATG--GKAIFPENIPGFEL-G------------------TDSDGF--------------------- 178 (479)
T ss_dssp EEEEE-----EEEECCC--EEECCCTTSTTGGG-S------------------BCHHHH---------------------
T ss_pred EEEeC-----EEEEcCC--CCCCCCCCCCCccc-c------------------cchHHH---------------------
Confidence 56789 9999999 788888 7876310 0 000000
Q ss_pred ccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC----------
Q psy12350 232 YFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------- 301 (1129)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------- 301 (1129)
+ . ... ..++++| ||||++|+|+|..|++.|.+|+++++.+.+++...++
T Consensus 179 -~----~-l~~----~~~~vvV-----------iGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~ 237 (479)
T 2hqm_A 179 -F----R-LEE----QPKKVVV-----------VGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYV 237 (479)
T ss_dssp -H----H-CSS----CCSEEEE-----------ECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHH
T ss_pred -h----c-ccc----cCCeEEE-----------ECCCHHHHHHHHHHHHcCCceEEEEeCCccccccCHHHHHHHHHHHH
Confidence 0 0 000 1233333 8999999999999999999999999998876543221
Q ss_pred ----CeEEcCCceEEcCC------ceEEcCC-CEeecCEEEEcccccccCCC-CCCCCCeEeecCcccccccccccCCCC
Q psy12350 302 ----NVVKKPDIAELTPT------GVRFQDG-SYEQVDIILYCTGYTYRYPF-LHESCGIKVVNKNVQPLYKHLINIEHP 369 (1129)
Q Consensus 302 ----~i~~~~~v~~~~~~------~v~~~dg-~~~~~D~VI~atG~~~~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~~p 369 (1129)
++..++.|++++++ .|.++|| +++++|.||+|+|++++..+ ++ ..++.++++..+....++ .+++|
T Consensus 238 ~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~-~~gl~~~~~G~i~vd~~~-~t~~~ 315 (479)
T 2hqm_A 238 KEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSE-NVGIKLNSHDQIIADEYQ-NTNVP 315 (479)
T ss_dssp HHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGG-GGTCCBCTTSCBCCCTTC-BCSST
T ss_pred hCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChh-hcCceECCCCCEeECCCC-ccCCC
Confidence 45667788888642 3778899 78999999999999999854 34 455666654433333332 36789
Q ss_pred CeEEeccccc----ccccccccceeeehhhccc
Q psy12350 370 SMCIIGYTYR----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 370 ~l~~~G~~~~----~~~~~~~~~~~~~a~~~~~ 398 (1129)
++|++|.... ++.+. .||+.+|.++.+
T Consensus 316 ~IyA~GD~~~~~~~~~~A~--~~g~~aa~~i~~ 346 (479)
T 2hqm_A 316 NIYSLGDVVGKVELTPVAI--AAGRKLSNRLFG 346 (479)
T ss_dssp TEEECGGGTTSSCCHHHHH--HHHHHHHHHHHS
T ss_pred CEEEEEecCCCcccHHHHH--HHHHHHHHHhcC
Confidence 9999998843 23344 788888888764
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-23 Score=236.99 Aligned_cols=270 Identities=13% Similarity=0.108 Sum_probs=165.3
Q ss_pred CCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccC
Q psy12350 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELS 85 (1129)
Q Consensus 6 ~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~ 85 (1129)
...+.||+|||||+||++||..|+. .+.+|+|||+++.++. . +..+++.+...
T Consensus 6 ~~~~~~~vIvGgG~AGl~aA~~L~~--~~~~itlie~~~~~~y----------------------~--~~~l~~~l~g~- 58 (385)
T 3klj_A 6 HHKSTKILILGAGPAGFSAAKAALG--KCDDITMINSEKYLPY----------------------Y--RPRLNEIIAKN- 58 (385)
T ss_dssp --CBCSEEEECCSHHHHHHHHHHTT--TCSCEEEECSSSSCCB----------------------C--GGGHHHHHHSC-
T ss_pred ccCCCCEEEEcCcHHHHHHHHHHhC--CCCEEEEEECCCCCCc----------------------c--cChhhHHHcCC-
Confidence 3456799999999999999999955 7899999999876431 0 11111111110
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEE
Q psy12350 86 GYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQ 165 (1129)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv 165 (1129)
.+.+++..+..++.+++++ .++++++|+.+++ +.+.+++. ......|| +||
T Consensus 59 ------------~~~~~l~~~~~~~~~~~~i--~~~~~~~V~~id~-----~~~~v~~~-----~g~~~~yd-----~lv 109 (385)
T 3klj_A 59 ------------KSIDDILIKKNDWYEKNNI--KVITSEFATSIDP-----NNKLVTLK-----SGEKIKYE-----KLI 109 (385)
T ss_dssp ------------CCGGGTBSSCHHHHHHTTC--EEECSCCEEEEET-----TTTEEEET-----TSCEEECS-----EEE
T ss_pred ------------CCHHHccCCCHHHHHHCCC--EEEeCCEEEEEEC-----CCCEEEEC-----CCCEEECC-----EEE
Confidence 0111222223444556666 7899999999986 33434332 23467899 999
Q ss_pred EecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccc
Q psy12350 166 LMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE 245 (1129)
Q Consensus 166 vAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 245 (1129)
|||| +.|+.|++||.. +. +.. +..++...
T Consensus 110 lAtG--~~p~~p~i~G~~-----~v---------------~~~-----------------------------~~~~d~~~ 138 (385)
T 3klj_A 110 IASG--SIANKIKVPHAD-----EI---------------FSL-----------------------------YSYDDALK 138 (385)
T ss_dssp ECCC--EEECCCCCTTCS-----CE---------------ECC-----------------------------SSHHHHHH
T ss_pred EecC--CCcCCCCCCCCC-----Ce---------------EEe-----------------------------CCHHHHHH
Confidence 9999 789999887732 10 000 11111110
Q ss_pred c-----cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCCCeEEcCCceEEcCCceEEc
Q psy12350 246 F-----RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPNNVVKKPDIAELTPTGVRFQ 320 (1129)
Q Consensus 246 ~-----~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~~i~~~~~v~~~~~~~v~~~ 320 (1129)
. ..++++| ||||.+|+|+|..|++.|.+||++++.+.+++..++..+.. .-...++..+|.+.
T Consensus 139 l~~~l~~~~~vvV-----------IGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~-~~~~~l~~~gV~~~ 206 (385)
T 3klj_A 139 IKDECKNKGKAFI-----------IGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGL-FLKDKLDRLGIKIY 206 (385)
T ss_dssp HHHHHHHHSCEEE-----------ECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHH-HHHHHHHTTTCEEE
T ss_pred HHHHhhcCCeEEE-----------ECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHH-HHHHHHHhCCCEEE
Confidence 0 1344444 79999999999999999999999999988766433221000 00001112222222
Q ss_pred C-------CCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc------cccccc
Q psy12350 321 D-------GSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP------FLHESC 387 (1129)
Q Consensus 321 d-------g~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~------~~~~~~ 387 (1129)
. |+++++|.||+|+|++++.++++. .++..+....++-+.+ .++|++|++|.....+ ......
T Consensus 207 ~~~~v~~ig~~~~~D~vv~a~G~~p~~~~~~~-~gl~~~~gi~vd~~~~---t~~~~IyA~GD~a~~~~~~~~~~~~A~~ 282 (385)
T 3klj_A 207 TNSNFEEMGDLIRSSCVITAVGVKPNLDFIKD-TEIASKRGILVNDHME---TSIKDIYACGDVAEFYGKNPGLINIANK 282 (385)
T ss_dssp CSCCGGGCHHHHHHSEEEECCCEEECCGGGTT-SCCCBSSSEEECTTCB---CSSTTEEECGGGEEETTBCCCCHHHHHH
T ss_pred eCCEEEEcCeEEecCeEEECcCcccChhhhhh-cCCCcCCCEEECCCcc---cCCCCEEEEEeeEecCCCcccHHHHHHH
Confidence 1 567899999999999999999874 4566543322332222 5789999999875421 122236
Q ss_pred ceeeehhhccc
Q psy12350 388 GIKVVNKNVQP 398 (1129)
Q Consensus 388 ~~~~~a~~~~~ 398 (1129)
||+.+|+++.+
T Consensus 283 qg~~aa~~i~g 293 (385)
T 3klj_A 283 QGEVAGLNACG 293 (385)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcC
Confidence 77777776653
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=218.42 Aligned_cols=277 Identities=11% Similarity=0.011 Sum_probs=179.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||+|||||+|||+||..|++ .+++|+|||+++..++.+.. ...++
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~~~~~~~----------------------------~~~~~---- 48 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGR--ARKNILLVDAGERRNRFASH----------------------------SHGFL---- 48 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--TTCCEEEEECCCCGGGGCSC----------------------------CCSST----
T ss_pred CCEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCcccccchh----------------------------hcCCc----
Confidence 799999999999999999999 56899999996533222110 01111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
.....+..++.+++.+++.+++.. .+ ++++|+.+++.. +.|.+... ......|| +||+|||
T Consensus 49 ----~~~~~~~~~~~~~~~~~~~~~~~v-~~-~~~~v~~i~~~~---~~~~v~~~-----~g~~~~~d-----~vviAtG 109 (297)
T 3fbs_A 49 ----GQDGKAPGEIIAEARRQIERYPTI-HW-VEGRVTDAKGSF---GEFIVEID-----GGRRETAG-----RLILAMG 109 (297)
T ss_dssp ----TCTTCCHHHHHHHHHHHHTTCTTE-EE-EESCEEEEEEET---TEEEEEET-----TSCEEEEE-----EEEECCC
T ss_pred ----CCCCCCHHHHHHHHHHHHHhcCCe-EE-EEeEEEEEEEcC---CeEEEEEC-----CCCEEEcC-----EEEECCC
Confidence 112456788999999998887321 22 356888887631 22433321 12357799 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccccc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKD 249 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1129)
..|..|++||... +.+ .+.+...+ ..... ...+
T Consensus 110 --~~~~~~~~~g~~~--~~~-------------~~~~~~~~---------------------------~~~~~---~~~~ 142 (297)
T 3fbs_A 110 --VTDELPEIAGLRE--RWG-------------SAVFHCPY---------------------------CHGYE---LDQG 142 (297)
T ss_dssp --CEEECCCCBTTGG--GBT-------------TTEESCHH---------------------------HHTGG---GTTC
T ss_pred --CCCCCCCCCCchh--hcC-------------CeeEEccc---------------------------Ccchh---hcCC
Confidence 6778887776321 111 00010000 11111 1234
Q ss_pred ceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc-------CCCCeEEcCCceEEcCC-ceEEcC
Q psy12350 250 KYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR-------FPNNVVKKPDIAELTPT-GVRFQD 321 (1129)
Q Consensus 250 ~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~-------~~~~i~~~~~v~~~~~~-~v~~~d 321 (1129)
+++| ||+|++|+|+|..|++.+ +|+++++.+...... ..-++. ...|++++++ .|.++|
T Consensus 143 ~v~v-----------vG~G~~~~e~a~~l~~~g-~v~~v~~~~~~~~~~~~~~l~~~gv~i~-~~~v~~i~~~~~v~~~~ 209 (297)
T 3fbs_A 143 KIGV-----------IAASPMAIHHALMLPDWG-ETTFFTNGIVEPDADQHALLAARGVRVE-TTRIREIAGHADVVLAD 209 (297)
T ss_dssp EEEE-----------ECCSTTHHHHHHHGGGTS-EEEEECTTTCCCCHHHHHHHHHTTCEEE-CSCEEEEETTEEEEETT
T ss_pred EEEE-----------EecCccHHHHHHHhhhcC-cEEEEECCCCCCCHHHHHHHHHCCcEEE-cceeeeeecCCeEEeCC
Confidence 4444 799999999999999998 999999876522110 111344 3678899877 799999
Q ss_pred CCEeecCEEEEcccccccCCCCCCCCCeEeec--Cc-ccccccccccCCCCCeEEeccccccc--ccccccceeeehhhc
Q psy12350 322 GSYEQVDIILYCTGYTYRYPFLHESCGIKVVN--KN-VQPLYKHLINIEHPSMCIIGYTYRYP--FLHESCGIKVVNKNV 396 (1129)
Q Consensus 322 g~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~--~~-~~~l~~~~~~~~~p~l~~~G~~~~~~--~~~~~~~~~~~a~~~ 396 (1129)
|+++++|.||+|+|++++.++++ ..++..+. .. .+....+ +.++.|++|++|.....| ......|++.+|.++
T Consensus 210 g~~~~~D~vi~a~G~~p~~~~~~-~~g~~~~~~~~G~~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i 287 (297)
T 3fbs_A 210 GRSIALAGLFTQPKLRITVDWIE-KLGCAVEEGPMGSTIVTDPM-KQTTARGIFACGDVARPAGSVALAVGDGAMAGAAA 287 (297)
T ss_dssp SCEEEESEEEECCEEECCCSCHH-HHTCCEEEETTEEEECCCTT-CBCSSTTEEECSGGGCTTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEEccCcccCchhHH-hcCCccccCCCCceEEeCCC-CccCCCCEEEEeecCCchHHHHHHHHhHHHHHHHH
Confidence 99999999999999999998876 34454442 22 2222222 336789999999876522 123337787878777
Q ss_pred ccccc
Q psy12350 397 QPLYK 401 (1129)
Q Consensus 397 ~~~~~ 401 (1129)
...+.
T Consensus 288 ~~~l~ 292 (297)
T 3fbs_A 288 HRSIL 292 (297)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65543
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-23 Score=238.26 Aligned_cols=275 Identities=13% Similarity=0.165 Sum_probs=171.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
++|+|||||+||++||..|++.|...+|+|||+++.++.. +..+++...... .+
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~------------------------~~~l~~~~~~g~-~~- 56 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYD------------------------RPSLSKAVLDGS-LE- 56 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBC------------------------SGGGGTHHHHTS-SS-
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcC------------------------CccccHHHhCCC-CC-
Confidence 5899999999999999999997655569999998754311 001111111000 00
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
..... +..++.++.++ +++++++|+.+++ +.+.+... ......|| +||+|||
T Consensus 57 ----~~~~~-------~~~~~~~~~~i--~~~~~~~v~~id~-----~~~~v~~~-----~g~~~~~d-----~lvlAtG 108 (410)
T 3ef6_A 57 ----RPPIL-------AEADWYGEARI--DMLTGPEVTALDV-----QTRTISLD-----DGTTLSAD-----AIVIATG 108 (410)
T ss_dssp ----SCCBS-------SCTTHHHHTTC--EEEESCCEEEEET-----TTTEEEET-----TSCEEECS-----EEEECCC
T ss_pred ----HHHhc-------CCHHHHHHCCC--EEEeCCEEEEEEC-----CCCEEEEC-----CCCEEECC-----EEEEccC
Confidence 00000 01122344555 8899999999876 33444332 12357799 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccccc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKD 249 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1129)
+.|..|++||... .+ .+.... .+.+....+.+ ...+
T Consensus 109 --~~p~~~~ipG~~~---~~---------------v~~~~~----------------------~~d~~~l~~~~--~~~~ 144 (410)
T 3ef6_A 109 --SRARTMALPGSQL---PG---------------VVTLRT----------------------YGDVQVLRDSW--TSAT 144 (410)
T ss_dssp --EEECCCCCTTTTS---TT---------------EECCCS----------------------HHHHHHHHHHC--CTTC
T ss_pred --CcccCCCCCCccc---cc---------------eEEecc----------------------HHHHHHHHHHh--ccCC
Confidence 7788888877321 11 000000 00000000011 0123
Q ss_pred ceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC---------------CCeEEcCCceEEcC
Q psy12350 250 KYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP---------------NNVVKKPDIAELTP 314 (1129)
Q Consensus 250 ~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~---------------~~i~~~~~v~~~~~ 314 (1129)
+++| ||+|++|+|+|..+++.|.+|+++++.+.+++...+ -++..+..|+++++
T Consensus 145 ~vvV-----------iGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 213 (410)
T 3ef6_A 145 RLLI-----------VGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSG 213 (410)
T ss_dssp EEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEEC
T ss_pred eEEE-----------ECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEec
Confidence 4443 899999999999999999999999999877543211 14566788999976
Q ss_pred C----ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccccc--------
Q psy12350 315 T----GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYPF-------- 382 (1129)
Q Consensus 315 ~----~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~~-------- 382 (1129)
+ +|.++||+++++|.||+|+|++++.++++ ..++.++....++.+.+ .++|++|++|.....|.
T Consensus 214 ~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~-~~gl~~~~gi~vd~~~~---t~~~~IyA~GD~a~~~~~~g~~~~~ 289 (410)
T 3ef6_A 214 EGQLEQVMASDGRSFVADSALICVGAEPADQLAR-QAGLACDRGVIVDHCGA---TLAKGVFAVGDVASWPLRAGGRRSL 289 (410)
T ss_dssp SSSCCEEEETTSCEEECSEEEECSCEEECCHHHH-HTTCCBSSSEECCTTSB---CSSTTEEECGGGEEEEBTTSSEECC
T ss_pred cCcEEEEEECCCCEEEcCEEEEeeCCeecHHHHH-hCCCccCCeEEEccCee---ECCCCEEEEEcceeccCCCCCeeee
Confidence 5 48899999999999999999999988875 34455543222333332 57899999998754432
Q ss_pred ---cccccceeeehhhcc
Q psy12350 383 ---LHESCGIKVVNKNVQ 397 (1129)
Q Consensus 383 ---~~~~~~~~~~a~~~~ 397 (1129)
.....||+.+|.++.
T Consensus 290 ~~~~~A~~qg~~aa~~i~ 307 (410)
T 3ef6_A 290 ETYMNAQRQAAAVAAAIL 307 (410)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHc
Confidence 122356666666554
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-22 Score=236.67 Aligned_cols=289 Identities=15% Similarity=0.191 Sum_probs=175.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCcccc-ccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIM-ELSG 86 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~-~~~d 86 (1129)
..+||+||||||||++||++|++ .|++|+|||++ .+||+|.+ .+|. |.+ .++.... ....+. ....
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~--~g~~V~liE~~-~~GG~~~~---~gci----P~k-~l~~~a~--~~~~~~~~~~~ 69 (450)
T 1ges_A 3 KHYDYIAIGGGSGGIASINRAAM--YGQKCALIEAK-ELGGTCVN---VGCV----PKK-VMWHAAQ--IREAIHMYGPD 69 (450)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHT--TTCCEEEEESS-CTTHHHHH---HSHH----HHH-HHHHHHH--HHHHHHTTGGG
T ss_pred ccCCEEEECCCHHHHHHHHHHHh--CCCeEEEEcCC-CCCCcccc---cCcc----ChH-HHHHHHH--HHHHHHHHHHh
Confidence 35899999999999999999999 67999999996 79999984 2221 111 1110000 000000 0111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHH-----------HhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFA-----------DNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL 155 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~-----------~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1129)
|.++. .....+..++.++.+++. ++.++ .+..++ ++.++ .+.+.+ + .....
T Consensus 70 ~g~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g~-~~~i~-------~~~v~~----~--g~~~~ 131 (450)
T 1ges_A 70 YGFDT--TINKFNWETLIASRTAYIDRIHTSYENVLGKNNV--DVIKGF-ARFVD-------AKTLEV----N--GETIT 131 (450)
T ss_dssp GTEEE--EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESC-CEEEE-------TTEEEE----T--TEEEE
T ss_pred cCccC--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeE-EEEec-------CCEEEE----C--CEEEE
Confidence 11100 001123444554444333 33333 444443 23332 133333 1 23577
Q ss_pred ecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccc
Q psy12350 156 FDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFES 235 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 235 (1129)
|| +||+||| +.|..|++||.. .+ ..+..+
T Consensus 132 ~d-----~lviAtG--s~p~~p~i~g~~--~~-----------------~~~~~~------------------------- 160 (450)
T 1ges_A 132 AD-----HILIATG--GRPSHPDIPGVE--YG-----------------IDSDGF------------------------- 160 (450)
T ss_dssp EE-----EEEECCC--EEECCCCSTTGG--GS-----------------BCHHHH-------------------------
T ss_pred eC-----EEEECCC--CCCCCCCCCCcc--ce-----------------ecHHHh-------------------------
Confidence 99 9999999 788888887631 00 000000
Q ss_pred ccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------
Q psy12350 236 FARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN-------------- 301 (1129)
Q Consensus 236 ~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~-------------- 301 (1129)
..... ..++++| ||||++|+|+|..|++.|.+|+++++.+.+++...+.
T Consensus 161 --~~~~~----~~~~vvV-----------iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 223 (450)
T 1ges_A 161 --FALPA----LPERVAV-----------VGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGP 223 (450)
T ss_dssp --HHCSS----CCSEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSC
T ss_pred --hhhhh----cCCeEEE-----------ECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCC
Confidence 00000 1233333 8999999999999999999999999988766532221
Q ss_pred CeEEcCCceEEcCC-----ceEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEec
Q psy12350 302 NVVKKPDIAELTPT-----GVRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIG 375 (1129)
Q Consensus 302 ~i~~~~~v~~~~~~-----~v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G 375 (1129)
++..++.|++++++ .|.++||+++++|.||+|+|++++.++|. +..++.++++..+....++ .+++|++|++|
T Consensus 224 ~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~-~t~~~~IyA~G 302 (450)
T 1ges_A 224 QLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQ-NTNIEGIYAVG 302 (450)
T ss_dssp EEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTS-BCSSTTEEECS
T ss_pred EEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCC-ccCCCCEEEEe
Confidence 45667788888642 37788999999999999999999998652 2344555544433333332 26789999999
Q ss_pred cccc----ccccccccceeeehhhccc
Q psy12350 376 YTYR----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 376 ~~~~----~~~~~~~~~~~~~a~~~~~ 398 (1129)
.... ++.+. .|++.+|.++.+
T Consensus 303 D~~~~~~~~~~A~--~~g~~aa~~i~~ 327 (450)
T 1ges_A 303 DNTGAVELTPVAV--AAGRRLSERLFN 327 (450)
T ss_dssp GGGTSCCCHHHHH--HHHHHHHHHHHT
T ss_pred ccCCCCccHHHHH--HHHHHHHHHHcC
Confidence 8753 23344 888888887764
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-22 Score=238.38 Aligned_cols=272 Identities=16% Similarity=0.219 Sum_probs=156.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||+||||||||++||+.|++ .+++|+|||++ .+||+|.+ .+|. |.+...+.. .....+.....|.+
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~--~g~~V~liE~~-~~GG~c~~---~gc~----P~k~l~~~a---~~~~~~~~~~~~g~ 69 (500)
T 1onf_A 3 YDLIVIGGGSGGMAAARRAAR--HNAKVALVEKS-RLGGTCVN---VGCV----PKKIMFNAA---SVHDILENSRHYGF 69 (500)
T ss_dssp BSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-STTHHHHH---TSHH----HHHHHHHHH---HHHHHHHHGGGGTC
T ss_pred cCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCC-CcCccccc---cCCc----chHHHHHHH---HHHHHHHhhHhcCC
Confidence 799999999999999999999 67999999997 59999985 2221 111000000 00011111111222
Q ss_pred CCCCCCCCCCHHHHHHH-----------HHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEecc--------ccCc
Q psy12350 90 KGHPDKSYIAANDVLEY-----------LNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGI--------PRDT 150 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~--------~~~~ 150 (1129)
... ...+..++.++ +..+.++.++ .++.++. ..++ .+.+.+.+. ..+.
T Consensus 70 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~~-~~id-------~~~v~v~~~~~~~~~~~~~~~ 136 (500)
T 1onf_A 70 DTK---FSFNLPLLVERRDKYIQRLNNIYRQNLSKDKV--DLYEGTA-SFLS-------ENRILIKGTKDNNNKDNGPLN 136 (500)
T ss_dssp CCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESCC-CCC-----------------------------
T ss_pred ccC---CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeEE-EEee-------CCEEEEEeccccccccccCCC
Confidence 111 11233333322 2333344444 4555532 2222 233333220 0111
Q ss_pred cceEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchh
Q psy12350 151 VGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLK 230 (1129)
Q Consensus 151 ~~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 230 (1129)
...+.|| +||+||| +.|..|++||.. .+ .++..+
T Consensus 137 ~~~~~~d-----~lViAtG--s~p~~p~i~G~~--~~-----------------~~~~~~-------------------- 170 (500)
T 1onf_A 137 EEILEGR-----NILIAVG--NKPVFPPVKGIE--NT-----------------ISSDEF-------------------- 170 (500)
T ss_dssp ----CBS-----SEEECCC--CCBCCCSCTTGG--GC-----------------EEHHHH--------------------
T ss_pred ceEEEeC-----EEEECCC--CCCCCCCCCCCC--cc-----------------cCHHHH--------------------
Confidence 2356789 9999999 788888887631 00 000000
Q ss_pred cccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC---------
Q psy12350 231 IYFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------- 301 (1129)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------- 301 (1129)
. .+. ..++++| ||||++|+|+|..|++.|.+||++++.+.+++...++
T Consensus 171 -------~---~~~--~~~~vvV-----------iGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l 227 (500)
T 1onf_A 171 -------F---NIK--ESKKIGI-----------VGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDM 227 (500)
T ss_dssp -------T---TCC--CCSEEEE-----------ECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHH
T ss_pred -------h---ccC--CCCeEEE-----------ECChHHHHHHHHHHHHcCCeEEEEecCCccCcccchhhHHHHHHHH
Confidence 0 011 0233333 8999999999999999999999999998876532221
Q ss_pred -----CeEEcCCceEEcCC-----ceEEcCCCE-eecCEEEEcccccccCCCC-CCCCCeEeecCcccccccccccCCCC
Q psy12350 302 -----NVVKKPDIAELTPT-----GVRFQDGSY-EQVDIILYCTGYTYRYPFL-HESCGIKVVNKNVQPLYKHLINIEHP 369 (1129)
Q Consensus 302 -----~i~~~~~v~~~~~~-----~v~~~dg~~-~~~D~VI~atG~~~~~~~l-~~~~~~~~~~~~~~~l~~~~~~~~~p 369 (1129)
++..+..|++++++ .|.++||++ +++|.||+|+|++++.++| -+..++.+ ++..+....++ .+++|
T Consensus 228 ~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~-~~G~i~vd~~~-~t~~~ 305 (500)
T 1onf_A 228 KKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVET-NNNYIVVDENQ-RTSVN 305 (500)
T ss_dssp HHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCB-SSSCEEECTTC-BCSSS
T ss_pred HhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccc-cCCEEEECCCc-ccCCC
Confidence 45667788888642 377889988 9999999999999999765 33555655 33322222222 25678
Q ss_pred CeEEecccc
Q psy12350 370 SMCIIGYTY 378 (1129)
Q Consensus 370 ~l~~~G~~~ 378 (1129)
++|++|...
T Consensus 306 ~iya~GD~~ 314 (500)
T 1onf_A 306 NIYAVGDCC 314 (500)
T ss_dssp SEEECSTTE
T ss_pred CEEEEeccc
Confidence 888888664
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.1e-23 Score=244.20 Aligned_cols=304 Identities=15% Similarity=0.136 Sum_probs=179.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+||||||||++||..|++ .|++|+|+||+ .+||+|.+ .+|. |.+...+.. ........++.|.
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~--~G~~V~liE~~-~~GGtc~~---~gci----Psk~l~~~a---~~~~~~~~~~~~g 74 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKK--HTDKVVLIEGG-AYGTTCAR---VGCM----PSKLLIAAA---DASYHASQTDLFG 74 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHT--TCSCEEEEESS-CSSCHHHH---HSHH----HHHHHHHHH---HHHHHHTCGGGGT
T ss_pred CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCC-CCCCcccc---cChh----cCHHHHHHH---HHHHHHhhhhhcC
Confidence 3799999999999999999999 66999999995 59999974 2221 111111110 0001111222222
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCc--ceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLR--NLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~--~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
++. .....+..++.++++.+.+++... ..+.....+..+.......+.+.+.+. ......|| +|||
T Consensus 75 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~~-----~~~~~~~d-----~lVi 142 (492)
T 3ic9_A 75 IQV--DRISVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQVD-----DHSQVIAK-----RIVI 142 (492)
T ss_dssp EEC--SEEEECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEET-----TTEEEEEE-----EEEE
T ss_pred cCC--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEEc-----CCcEEEeC-----EEEE
Confidence 211 111246677778877766655310 000000011111111111233444331 23457799 9999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||| +.|..|++++..... .+. ..+.+...
T Consensus 143 ATG--s~p~~p~~~~~~~~~------------------v~t-------------------------------~~~~~~~~ 171 (492)
T 3ic9_A 143 ATG--SRPNYPEFLAAAGSR------------------LLT-------------------------------NDNLFELN 171 (492)
T ss_dssp CCC--EECCCCHHHHTTGGG------------------EEC-------------------------------HHHHTTCS
T ss_pred ccC--CCCcCCCCCCccCCc------------------EEc-------------------------------HHHHhhhh
Confidence 999 889888775421000 000 00000000
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC-------------CCeEEcCCceEEc
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP-------------NNVVKKPDIAELT 313 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~-------------~~i~~~~~v~~~~ 313 (1129)
.. +++++| ||||++|+|+|..|++.|.+||+++|.+.+++...+ -++..++.|++++
T Consensus 172 ~~------~k~vvV----iGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~V~i~~~~~v~~i~ 241 (492)
T 3ic9_A 172 DL------PKSVAV----FGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEEFYFDAKARVISTI 241 (492)
T ss_dssp SC------CSEEEE----ESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCCCHHHHHHHHHHHHTTSEEETTCEEEEEE
T ss_pred hc------CCeEEE----ECCCHHHHHHHHHHHHcCCeEEEEEECCcccccCCHHHHHHHHHHHhhCcEEEECCEEEEEE
Confidence 01 233333 899999999999999999999999999887654221 1344466788885
Q ss_pred CC--c--eEEc--CC--CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccccc-ccc
Q psy12350 314 PT--G--VRFQ--DG--SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY-PFL 383 (1129)
Q Consensus 314 ~~--~--v~~~--dg--~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~-~~~ 383 (1129)
.+ + +.+. || +++++|.||+|+|++++.++|. +..++.++++..+......+..+.|++|++|..... +++
T Consensus 242 ~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~IyA~GD~~~~~~~~ 321 (492)
T 3ic9_A 242 EKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLTLL 321 (492)
T ss_dssp ECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTTEEECGGGGTSSCSH
T ss_pred EcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCCEEEEEecCCCCccH
Confidence 43 3 4554 67 5689999999999999999853 345667666554333211222578999999987543 222
Q ss_pred -ccccceeeehhhccc
Q psy12350 384 -HESCGIKVVNKNVQP 398 (1129)
Q Consensus 384 -~~~~~~~~~a~~~~~ 398 (1129)
.+..|++.+|.++.+
T Consensus 322 ~~A~~~g~~aa~~i~~ 337 (492)
T 3ic9_A 322 HEAADDGKVAGTNAGA 337 (492)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC
Confidence 334888888888764
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.8e-23 Score=243.76 Aligned_cols=307 Identities=16% Similarity=0.137 Sum_probs=177.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc--------CCcCceEecCCCCCCCCCCCCccCcccccccccCCccc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT--------DNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEI 81 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~--------~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~ 81 (1129)
+||+||||||||++||.++++ .|.+|+|+|+. ..+||+|.+ .||. |.+...+..-.....+.
T Consensus 43 YDviVIG~GpaG~~aA~~aa~--~G~kValIE~~~~~~~~~k~~lGGtCln---~GCI----PsK~L~~aa~~~~~~~~- 112 (542)
T 4b1b_A 43 YDYVVIGGGPGGMASAKEAAA--HGARVLLFDYVKPSSQGTKWGIGGTCVN---VGCV----PKKLMHYAGHMGSIFKL- 112 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHT--TTCCEEEECCCCCCTTCCCCCSSHHHHH---HSHH----HHHHHHHHHHHHHHHHH-
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccccccccccCCCCCcccc---cchH----HHHHHHHHHHHHHHHHh-
Confidence 799999999999999999999 67999999974 458999984 4442 32221111100000000
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCC--cceeEeceeeeeeccccccCCCCceEEeccc-cCccceEEecc
Q psy12350 82 MELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNL--RNLCLVNKNVQPLYKHLINIEHPSMCIIGIP-RDTVGFYLFDL 158 (1129)
Q Consensus 82 ~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~--~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~ 158 (1129)
....|.+.. ...-.+..++.++.+...+++.- ...+ -+..|+-+...+...+..++.+.... ........++
T Consensus 113 -~~~~~Gi~~--~~~~~d~~~~~~~~~~~v~~l~~~~~~~l-~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~- 187 (542)
T 4b1b_A 113 -DSKAYGWKF--DNLKHDWKKLVTTVQSHIRSLNFSYMTGL-RSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGK- 187 (542)
T ss_dssp -TGGGGTEEE--EEEEECHHHHHHHHHHHHHHHHHHHHHHH-HHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEE-
T ss_pred -hhHhcCccc--CcccccHHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeee-
Confidence 000010000 00112455666665555444310 0000 01123322222222344555543322 2234456778
Q ss_pred eeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccc
Q psy12350 159 QVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFAR 238 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 238 (1129)
++||||| +.|.+|++++...... . .
T Consensus 188 ----~iiIATG--s~P~~P~~~~~~~~~~-----------------~--------------------------------t 212 (542)
T 4b1b_A 188 ----YILIATG--CRPHIPDDVEGAKELS-----------------I--------------------------------T 212 (542)
T ss_dssp ----EEEECCC--EEECCCSSSBTHHHHC-----------------B--------------------------------C
T ss_pred ----eEEeccC--CCCCCCCcccCCCccc-----------------c--------------------------------C
Confidence 9999999 8999886533111000 0 1
Q ss_pred cccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeE
Q psy12350 239 CSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVV 304 (1129)
Q Consensus 239 ~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~ 304 (1129)
+.+.|.....++.++| ||||++|+|+|..++++|.+||++.|+. +++..+++ ++.
T Consensus 213 s~~~l~l~~lP~~lvI----------IGgG~IGlE~A~~~~~lG~~VTii~~~~-~L~~~D~ei~~~l~~~l~~~gi~~~ 281 (542)
T 4b1b_A 213 SDDIFSLKKDPGKTLV----------VGASYVALECSGFLNSLGYDVTVAVRSI-VLRGFDQQCAVKVKLYMEEQGVMFK 281 (542)
T ss_dssp HHHHTTCSSCCCSEEE----------ECCSHHHHHHHHHHHHHTCCEEEEESSC-SSTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred chhhhccccCCceEEE----------ECCCHHHHHHHHHHHhcCCeEEEecccc-cccccchhHHHHHHHHHHhhcceee
Confidence 1111111112333333 8999999999999999999999998864 44443322 455
Q ss_pred EcCCceEEcCC--c--eEEcCCCEeecCEEEEcccccccCCCCCC-CCCeEeecCcccccccccccCCCCCeEEecccc-
Q psy12350 305 KKPDIAELTPT--G--VRFQDGSYEQVDIILYCTGYTYRYPFLHE-SCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY- 378 (1129)
Q Consensus 305 ~~~~v~~~~~~--~--v~~~dg~~~~~D~VI~atG~~~~~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~- 378 (1129)
....+++++.. . |.+.+++++++|.|++|+|.+|+...|.- ..++.++.......-...+-+++|++|.+|...
T Consensus 282 ~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~Ts~p~IyAiGDv~~ 361 (542)
T 4b1b_A 282 NGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCTNIPSIFAVGDVAE 361 (542)
T ss_dssp ETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBCSSTTEEECTTSBT
T ss_pred cceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccccCCCeEEeccccC
Confidence 66777777543 2 67788999999999999999999988752 245666554332111122236889999999874
Q ss_pred ccc----ccccccceeeehhhcccc
Q psy12350 379 RYP----FLHESCGIKVVNKNVQPL 399 (1129)
Q Consensus 379 ~~~----~~~~~~~~~~~a~~~~~~ 399 (1129)
..| .+. .|++.++.++.+.
T Consensus 362 ~~p~La~~A~--~eg~~aa~~i~g~ 384 (542)
T 4b1b_A 362 NVPELAPVAI--KAGEILARRLFKD 384 (542)
T ss_dssp TCCCCHHHHH--HHHHHHHHHHHSC
T ss_pred CchhHHHHHH--HHHHHHHHHHhcC
Confidence 323 243 6777777776654
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-22 Score=231.19 Aligned_cols=266 Identities=14% Similarity=0.160 Sum_probs=169.7
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
.+|+||||||||++||..|++ .+ +|+|+|+++..+ +. .++. ++.+....
T Consensus 9 ~~vvIIGgG~AGl~aA~~l~~--~g-~V~lie~~~~~~--~~---------------~~~l-------~~~~~g~~---- 57 (367)
T 1xhc_A 9 SKVVIVGNGPGGFELAKQLSQ--TY-EVTVIDKEPVPY--YS---------------KPML-------SHYIAGFI---- 57 (367)
T ss_dssp CEEEEECCSHHHHHHHHHHTT--TS-EEEEECSSSSCC--CC---------------STTH-------HHHHTTSS----
T ss_pred CcEEEECCcHHHHHHHHHHhh--cC-CEEEEECCCCCc--cc---------------cchh-------HHHHhCCC----
Confidence 589999999999999999999 55 999999977432 00 0011 01010000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
..+++..+..++.++.++ .++++++|+.+++ +.+.+. . + .....|| +||||||
T Consensus 58 ---------~~~~~~~~~~~~~~~~~v--~~~~g~~v~~id~-----~~~~V~-~---~--g~~~~~d-----~lViATG 110 (367)
T 1xhc_A 58 ---------PRNRLFPYSLDWYRKRGI--EIRLAEEAKLIDR-----GRKVVI-T---E--KGEVPYD-----TLVLATG 110 (367)
T ss_dssp ---------CGGGGCSSCHHHHHHHTE--EEECSCCEEEEET-----TTTEEE-E---S--SCEEECS-----EEEECCC
T ss_pred ---------CHHHhccCCHHHHHhCCc--EEEECCEEEEEEC-----CCCEEE-E---C--CcEEECC-----EEEECCC
Confidence 011111122333455565 7888889988876 334443 1 1 2357899 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc--c
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF--R 247 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~ 247 (1129)
+.|..|++||. + +.+ .... . .....+... .
T Consensus 111 --s~p~~p~i~G~-~----~v~--------------~~~~-----------------------~----~~~~~l~~~~~~ 142 (367)
T 1xhc_A 111 --ARAREPQIKGK-E----YLL--------------TLRT-----------------------I----FDADRIKESIEN 142 (367)
T ss_dssp --EEECCCCSBTG-G----GEE--------------CCCS-----------------------H----HHHHHHHHHHHH
T ss_pred --CCCCCCCCCCc-C----CEE--------------EEcC-----------------------H----HHHHHHHHHhhc
Confidence 78888888761 1 100 0000 0 000011000 1
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCceEEc
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAELT 313 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~~ 313 (1129)
.++++| ||||++|+|+|..|++.|.+||++++.+.+++ ..++ ++..++.|++++
T Consensus 143 ~~~vvV-----------iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~ 210 (367)
T 1xhc_A 143 SGEAII-----------IGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSELLEAN 210 (367)
T ss_dssp HSEEEE-----------EECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-CCHHHHHHHHHHHHHTTEEEECSCCEEEEC
T ss_pred CCcEEE-----------ECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc-CCHHHHHHHHHHHHHCCCEEEcCCEEEEEE
Confidence 234444 79999999999999999999999999988766 2211 455577899998
Q ss_pred CCceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc-----cc-ccccc
Q psy12350 314 PTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY-----PF-LHESC 387 (1129)
Q Consensus 314 ~~~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~-----~~-~~~~~ 387 (1129)
.++|.++||+ +++|.||+|+|++++.++++ ..++..+....++-+.+ ++.|++|++|..... ++ .....
T Consensus 211 ~~~v~~~~g~-i~~D~vi~a~G~~p~~~ll~-~~gl~~~~gi~Vd~~~~---t~~~~IyA~GD~a~~~~~~~~~~~~A~~ 285 (367)
T 1xhc_A 211 EEGVLTNSGF-IEGKVKICAIGIVPNVDLAR-RSGIHTGRGILIDDNFR---TSAKDVYAIGDCAEYSGIIAGTAKAAME 285 (367)
T ss_dssp SSEEEETTEE-EECSCEEEECCEEECCHHHH-HTTCCBSSSEECCTTSB---CSSTTEEECGGGEEBTTBCCCSHHHHHH
T ss_pred eeEEEECCCE-EEcCEEEECcCCCcCHHHHH-hCCCCCCCCEEECCCcc---cCCCCEEEeEeeeecCCCCccHHHHHHH
Confidence 7789999998 99999999999999988765 34455432212222222 478999999987421 11 12237
Q ss_pred ceeeehhhccc
Q psy12350 388 GIKVVNKNVQP 398 (1129)
Q Consensus 388 ~~~~~a~~~~~ 398 (1129)
|++.+|.++.+
T Consensus 286 qg~~aa~~i~g 296 (367)
T 1xhc_A 286 QARVLADILKG 296 (367)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcC
Confidence 88888888764
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=9.8e-22 Score=235.32 Aligned_cols=306 Identities=14% Similarity=0.104 Sum_probs=181.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCC-CceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGS-GFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~-~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
+||+|||||+||++||.+|++..+ |++|+|||+++ +||+|.+ .+ |.....+.... .....+..+..+.
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~---~g-----~~psk~l~~~a--~~~~~~~~~~~~g 71 (499)
T 1xdi_A 3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVL---DD-----CVPSKTFIAST--GLRTELRRAPHLG 71 (499)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHH---TS-----HHHHHHHHHHH--HHHHHHTTTTTTT
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccC---cC-----ccchHHHHHHH--HHHHHHHHHHhCC
Confidence 799999999999999999999522 79999999987 9999984 12 21111111100 0000111122222
Q ss_pred CCCCCCCCCCCHHHHHH-----------HHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 89 HKGHPDKSYIAANDVLE-----------YLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~-----------yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
++........+...+.. ++.++.++.++ .++.++ ++.+++... .+...+.+.. ..++.....||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~-~~~i~~~~~-~~~~~~~V~~-~~g~~~~~~~d 146 (499)
T 1xdi_A 72 FHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGV--QVIAGR-GELIDSTPG-LARHRIKATA-ADGSTSEHEAD 146 (499)
T ss_dssp BC------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESE-EEECCSSSC-CSSEEEEEEC-TTSCEEEEEES
T ss_pred CccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeE-EEEecCccc-CCCCEEEEEe-CCCcEEEEEeC
Confidence 21000111123444433 34555566665 666665 555543100 0013344432 12211257899
Q ss_pred ceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFA 237 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 237 (1129)
+||+||| +.|..|++||..... ..+.
T Consensus 147 -----~lviATG--s~p~~p~i~g~~~~~------------------v~~~----------------------------- 172 (499)
T 1xdi_A 147 -----VVLVATG--ASPRILPSAQPDGER------------------ILTW----------------------------- 172 (499)
T ss_dssp -----EEEECCC--EEECCCGGGCCCSSS------------------EEEG-----------------------------
T ss_pred -----EEEEcCC--CCCCCCCCCCCCcCc------------------EEeh-----------------------------
Confidence 9999999 788888876621100 0000
Q ss_pred ccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCe
Q psy12350 238 RCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNV 303 (1129)
Q Consensus 238 ~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i 303 (1129)
.....+. ...++++| ||+|++|+|+|..+++.|.+|+++++.+.+++...+ -++
T Consensus 173 ~~~~~~~-~~~~~vvV-----------iGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i 240 (499)
T 1xdi_A 173 RQLYDLD-ALPDHLIV-----------VGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEESFAERGVRL 240 (499)
T ss_dssp GGGGGCS-SCCSSEEE-----------ESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCCSSHHHHHHHHHHHHHTTCEE
T ss_pred hHhhhhh-ccCCeEEE-----------ECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEE
Confidence 0000010 01233443 799999999999999999999999999887653221 145
Q ss_pred EEcCCceEEcCCc----eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 304 VKKPDIAELTPTG----VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 304 ~~~~~v~~~~~~~----v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
..++.|+++++++ |.+.+|+++++|.||+|+|++++.++|. +..++.++++..+....++ -+++|++|++|...
T Consensus 241 ~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~-~t~~~~IyA~GD~~ 319 (499)
T 1xdi_A 241 FKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVS-RTLATGIYAAGDCT 319 (499)
T ss_dssp ETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSS-BCSSTTEEECSGGG
T ss_pred EeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCc-ccCCCCEEEEeccC
Confidence 5677888886442 4557888899999999999999998842 3566777654433333332 25789999999885
Q ss_pred ccc-c-cccccceeeehhhccc
Q psy12350 379 RYP-F-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 379 ~~~-~-~~~~~~~~~~a~~~~~ 398 (1129)
..| + .....||+.+|.++.+
T Consensus 320 ~~~~l~~~A~~~g~~aa~~i~g 341 (499)
T 1xdi_A 320 GLLPLASVAAMQGRIAMYHALG 341 (499)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTT
T ss_pred CCcccHHHHHHHHHHHHHHhcC
Confidence 432 1 1223777777777764
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.5e-22 Score=222.35 Aligned_cols=277 Identities=14% Similarity=0.162 Sum_probs=165.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+|||||||||+||.+|++ .|++|+|||| +.+||+|.+. +| ++ .++.+
T Consensus 6 ~yDvvIIG~GpAGl~aA~~l~~--~g~~V~liE~-~~~gG~~~~~---~~----------i~------------~~p~~- 56 (312)
T 4gcm_A 6 DFDIAIIGAGPAGMTAAVYASR--ANLKTVMIER-GIPGGQMANT---EE----------VE------------NFPGF- 56 (312)
T ss_dssp SEEEEEECCSHHHHHHHHHHHH--TTCCEEEEES-SCTTGGGGGC---SC----------BC------------CSTTC-
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCCEEEEec-CCCCCeeecc---cc----------cC------------CcCCc-
Confidence 4899999999999999999999 6699999999 5699998741 11 11 11111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
......++.........+.+. .+..+..+...... ....+ ......+.|| +|||||
T Consensus 57 -------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~----~~~~~~~~~d-----~liiAt 112 (312)
T 4gcm_A 57 -------EMITGPDLSTKMFEHAKKFGA--VYQYGDIKSVEDKG------EYKVI----NFGNKELTAK-----AVIIAT 112 (312)
T ss_dssp -------SSBCHHHHHHHHHHHHHHTTC--EEEECCCCEEEECS------SCEEE----ECSSCEEEEE-----EEEECC
T ss_pred -------cccchHHHHHHHHHHHhhccc--cccceeeeeeeeee------cceee----ccCCeEEEec-----eeEEcc
Confidence 233556666666666666544 34444444332221 01111 1223456788 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|..|++||... +.++ +.+.... .+... ...
T Consensus 113 G--s~~~~~~ipG~~~--~~~~-------------~v~~~~~---------------------------~~~~~---~~~ 145 (312)
T 4gcm_A 113 G--AEYKKIGVPGEQE--LGGR-------------GVSYCAV---------------------------CDGAF---FKN 145 (312)
T ss_dssp C--EEECCCCCTTTTT--TBTT-------------TEESCHH---------------------------HHGGG---GTT
T ss_pred c--CccCcCCCCChhh--hCCc-------------cEEeeec---------------------------cCccc---cCC
Confidence 9 8899999988422 1110 1100000 00111 123
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC-------CCeEEcC--CceEEc--CC--
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP-------NNVVKKP--DIAELT--PT-- 315 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~-------~~i~~~~--~v~~~~--~~-- 315 (1129)
++++| ||||++|+|+|..|++.|.+||+++|.+.+++.... ..+.... .+.... +.
T Consensus 146 k~vvV-----------iGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (312)
T 4gcm_A 146 KRLFV-----------IGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKV 214 (312)
T ss_dssp CEEEE-----------ECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHHHHHHCTTEEEECSEEEEEEEEETTEE
T ss_pred CEEEE-----------ECCCHHHHHHHHHHHhcCCEEEEEecccccCcchhHHHHHHHhcCcceeeecceeeeecccccc
Confidence 44444 799999999999999999999999999877643211 1121111 111111 11
Q ss_pred c---e-EEc--CCCEeecCEEEEcccccccCCCCCCCCCeEeecCc--ccccccccccCCCCCeEEeccccccc---ccc
Q psy12350 316 G---V-RFQ--DGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKN--VQPLYKHLINIEHPSMCIIGYTYRYP---FLH 384 (1129)
Q Consensus 316 ~---v-~~~--dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~--~~~l~~~~~~~~~p~l~~~G~~~~~~---~~~ 384 (1129)
+ . ... ++..+++|.|++++|.+++..++.. .++.. ++. .++-+. -++.|++|.+|.....+ ...
T Consensus 215 ~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~-~g~~~-~~G~I~vd~~~---~Ts~pgIyA~GDv~~~~~~~~~~ 289 (312)
T 4gcm_A 215 GSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKD-LGITN-DVGYIVTKDDM---TTSVPGIFAAGDVRDKGLRQIVT 289 (312)
T ss_dssp EEEEEEETTTCCEEEEECSEEEECSCEEESCGGGGG-GTCBC-TTSCBCCCTTS---BCSSTTEEECSTTBSCSCCSHHH
T ss_pred ccceeeeecCCceeEEeeeeEEeecCCCcCchhHHh-cceec-CCCeEeeCCCC---ccCCCCEEEEeecCCCcchHHHH
Confidence 0 1 112 2346799999999999999888763 33332 222 222222 26789999999875321 122
Q ss_pred cccceeeehhhcccccc
Q psy12350 385 ESCGIKVVNKNVQPLYK 401 (1129)
Q Consensus 385 ~~~~~~~~a~~~~~~~~ 401 (1129)
+..|++.+|+++..++.
T Consensus 290 A~~~G~~AA~~i~~~L~ 306 (312)
T 4gcm_A 290 ATGDGSIAAQSAAEYIE 306 (312)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33788888887765543
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7e-23 Score=244.14 Aligned_cols=130 Identities=18% Similarity=0.128 Sum_probs=102.5
Q ss_pred ccccccCCCCCcCcCCCChHHHHHHHH----hcccceecCCCCCcceecccCCCC--------------C----cceEEE
Q psy12350 434 YKHLINIDHPSMCIIGIPGDTVVFYMF----DLQDKIRPGRGNPRPSACEADALP--------------T----NLTRLT 491 (1129)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~e~~~y~~----~~~~~i~~~~~~~~v~~~~~~~~~--------------~----~~~~~~ 491 (1129)
+.+.++++|+++..+|++|.||.+||+ ++..+|+|+++|++|+..+++... + ...+++
T Consensus 126 ~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~ 205 (501)
T 4b63_A 126 HQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRK 205 (501)
T ss_dssp HHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEE
T ss_pred HHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCE
Confidence 345667788889999999999999999 566679997777777655433210 1 123466
Q ss_pred EEEcccCCCCCCCCCCCCCCCcCCcEEecCCCCC------CCCCCCCeEEEEccCcchhhhHHHhhcc--cCeEEEEEEe
Q psy12350 492 YIISSRNYSNPVYPDFKGKDVCQIPIMHSHEYRT------PEPFAGKRAVVVGSGPSGLDITHDISTE--ATTVSAYLRF 563 (1129)
Q Consensus 492 ~v~atG~~~~p~~p~~~g~~~f~g~v~hs~~~~~------~~~~~~k~v~ViG~g~sa~~~~~~l~~~--~~~v~~~~r~ 563 (1129)
||+||| ..|++|++ ..|.|+++||++|.+ ..+++||||+|||+|+||+|++.+|++. +++|+|++|+
T Consensus 206 vVlatG--~~P~iP~~---~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~ 280 (501)
T 4b63_A 206 VVIAIG--GTAKMPSG---LPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRD 280 (501)
T ss_dssp EEECCC--CEECCCTT---SCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSS
T ss_pred EEECcC--CCCCCCCC---CCCCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 899999 66776654 457899999999975 4569999999999999999999999875 7899999999
Q ss_pred cceee
Q psy12350 564 DNKTI 568 (1129)
Q Consensus 564 ~~~~~ 568 (1129)
+++..
T Consensus 281 ~~~~p 285 (501)
T 4b63_A 281 SAMRP 285 (501)
T ss_dssp SSCCB
T ss_pred Ccccc
Confidence 98743
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.8e-22 Score=238.94 Aligned_cols=300 Identities=13% Similarity=0.125 Sum_probs=184.9
Q ss_pred CCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccC
Q psy12350 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELS 85 (1129)
Q Consensus 6 ~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~ 85 (1129)
+...+||+|||||+||++||.+|++ .|++|+|||+++.+||+|.+ .+|. |.+...+... ....+..+.
T Consensus 40 ~~~~~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE~~~~~GG~~~~---~g~~----p~k~l~~~~~---~~~~~~~~~ 107 (523)
T 1mo9_A 40 DPREYDAIFIGGGAAGRFGSAYLRA--MGGRQLIVDRWPFLGGSCPH---NACV----PHHLFSDCAA---ELMLARTFS 107 (523)
T ss_dssp CCSCBSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSCHHHH---HSHH----HHHHHHHHHH---HHHHHHHTT
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCcccc---cCcC----chHHHHHHHH---HHHHHhhhh
Confidence 3445899999999999999999999 56899999998889999985 1210 1000000000 000001111
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHH-------HH-----HhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccce
Q psy12350 86 GYHHKGHPDKSYIAANDVLEYLND-------FA-----DNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGF 153 (1129)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~yl~~-------~~-----~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1129)
.|.+.......+++.+++.+++.. +. ++.++ .++++.+|+.++. +.+.+. ...
T Consensus 108 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~-------~~v~~~------g~~ 172 (523)
T 1mo9_A 108 GQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNL--EYILNCPAKVIDN-------HTVEAA------GKV 172 (523)
T ss_dssp TSTTCCCCTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCC--CEEESSCCEEEET-------TEEEET------TEE
T ss_pred hcCcHHHHHhhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCc--EEEEeeEEEEeeC-------CEEEEC------CEE
Confidence 222100112234557788877753 23 44555 5665667766643 233321 235
Q ss_pred EEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccc
Q psy12350 154 YLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYF 233 (1129)
Q Consensus 154 ~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 233 (1129)
..|| +||+||| +.|..|++||.... +. ..+..+
T Consensus 173 ~~~d-----~lViATG--s~p~~p~i~G~~~~---~v--------------~~~~~~----------------------- 205 (523)
T 1mo9_A 173 FKAK-----NLILAVG--AGPGTLDVPGVNAK---GV--------------FDHATL----------------------- 205 (523)
T ss_dssp EEBS-----CEEECCC--EECCCCCSTTTTSB---TE--------------EEHHHH-----------------------
T ss_pred EEeC-----EEEECCC--CCCCCCCCCCcccC---cE--------------eeHHHH-----------------------
Confidence 6789 9999999 78888888763210 00 000000
Q ss_pred ccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC-------------
Q psy12350 234 ESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP------------- 300 (1129)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~------------- 300 (1129)
. +.+....+++++| ||||++|+|+|..+++.|.+|+++++.+.+++...+
T Consensus 206 ----~--~~l~~~~g~~vvV-----------iGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~ 268 (523)
T 1mo9_A 206 ----V--EELDYEPGSTVVV-----------VGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQ 268 (523)
T ss_dssp ----H--HHCCSCCCSEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHT
T ss_pred ----H--HHHHhcCCCeEEE-----------ECCCHHHHHHHHHHHHcCCeEEEEEecCcccccccHHHHHHHHHHHHhC
Confidence 0 0011011133433 899999999999999999999999999877653221
Q ss_pred -CCeEEcCCceEEcC--Cc------eEEcCCC-EeecCEEEEcccccccCC-CCCCCCCeEeecCcccccccccccCCCC
Q psy12350 301 -NNVVKKPDIAELTP--TG------VRFQDGS-YEQVDIILYCTGYTYRYP-FLHESCGIKVVNKNVQPLYKHLINIEHP 369 (1129)
Q Consensus 301 -~~i~~~~~v~~~~~--~~------v~~~dg~-~~~~D~VI~atG~~~~~~-~l~~~~~~~~~~~~~~~l~~~~~~~~~p 369 (1129)
-++..++.|++++. ++ |.++||+ ++++|.||+|+|++++.+ +++ ..++.++++..+....++ -+++|
T Consensus 269 GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~-~~gl~~~~~G~i~Vd~~~-~t~~~ 346 (523)
T 1mo9_A 269 GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAK-ILGLDLGPKGEVLVNEYL-QTSVP 346 (523)
T ss_dssp TCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHH-HHTCCBCTTSCBCCCTTS-BCSST
T ss_pred CcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHH-HcCCccCCCCCEEECCCC-ccCCC
Confidence 14556777888864 33 5677887 789999999999999988 665 344555544332222222 25789
Q ss_pred CeEEeccccccc-c-cccccceeeehhhccc
Q psy12350 370 SMCIIGYTYRYP-F-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 370 ~l~~~G~~~~~~-~-~~~~~~~~~~a~~~~~ 398 (1129)
++|++|.....| + .....||+.+|.++.+
T Consensus 347 ~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 377 (523)
T 1mo9_A 347 NVYAVGDLIGGPMEMFKARKSGCYAARNVMG 377 (523)
T ss_dssp TEEECGGGGCSSCSHHHHHHHHHHHHHHHTT
T ss_pred CEEEEeecCCCcccHHHHHHHHHHHHHHHcC
Confidence 999999875432 1 1223788888877764
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-22 Score=238.98 Aligned_cols=304 Identities=15% Similarity=0.152 Sum_probs=177.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc-------C--CcCceEecCCCCCCCCCCCCccCcccccccccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT-------D--NVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLP 78 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~-------~--~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~ 78 (1129)
..+||+||||||||++||..|++ .|++|+|+||. . .+||+|.+ .+|. |.+...+.. ...
T Consensus 8 ~~~DvvVIGgG~aGl~aA~~la~--~G~~V~liEk~~~~~~~~~~~~~GG~c~~---~gci----Psk~l~~~~---~~~ 75 (483)
T 3dgh_A 8 YDYDLIVIGGGSAGLACAKEAVL--NGARVACLDFVKPTPTLGTKWGVGGTCVN---VGCI----PKKLMHQAS---LLG 75 (483)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTTTCCCCSSCHHHH---HSHH----HHHHHHHHH---HHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCEEEEEEeccccccccccCCcCCeecc---cCch----hhHHHHHHH---HHH
Confidence 45899999999999999999999 66999999942 1 38999984 2331 111111100 000
Q ss_pred ccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEe-ceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 79 KEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLV-NKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 79 ~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
........|.++.. ....++..++.++.+.+.+.+.......+ ...|+.+.......+.+.+.+.. ..+ ...+.||
T Consensus 76 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~-~~g-~~~~~~d 152 (483)
T 3dgh_A 76 EAVHEAAAYGWNVD-DKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKL-KSG-ERTITAQ 152 (483)
T ss_dssp HHHHHHHHTTBCCC-CCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEEC-TTC-CEEEEEE
T ss_pred HHHHHHHhcCcccC-CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEe-CCC-eEEEEcC
Confidence 00111111222111 11244677777777766654421000000 01121111111111223344432 112 1457899
Q ss_pred ceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFA 237 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 237 (1129)
+|||||| +.|..|++||.....+ .+..+
T Consensus 153 -----~lviATG--s~p~~p~i~G~~~~~~------------------~~~~~--------------------------- 180 (483)
T 3dgh_A 153 -----TFVIAVG--GRPRYPDIPGAVEYGI------------------TSDDL--------------------------- 180 (483)
T ss_dssp -----EEEECCC--EEECCCSSTTHHHHCB------------------CHHHH---------------------------
T ss_pred -----EEEEeCC--CCcCCCCCCCcccccC------------------cHHHH---------------------------
Confidence 9999999 8899998887421110 00000
Q ss_pred ccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCe
Q psy12350 238 RCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNV 303 (1129)
Q Consensus 238 ~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i 303 (1129)
..... ..++++| ||+|++|+|+|..|++.|.+|++++|+. +++...+ -++
T Consensus 181 ~~~~~----~~~~vvV-----------iGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~l~~~d~~~~~~l~~~l~~~Gv~i 244 (483)
T 3dgh_A 181 FSLDR----EPGKTLV-----------VGAGYIGLECAGFLKGLGYEPTVMVRSI-VLRGFDQQMAELVAASMEERGIPF 244 (483)
T ss_dssp TTCSS----CCCEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEEESSC-SSTTSCHHHHHHHHHHHHHTTCCE
T ss_pred hhhhh----cCCcEEE-----------ECCCHHHHHHHHHHHHcCCEEEEEeCCC-CCcccCHHHHHHHHHHHHhCCCEE
Confidence 00001 1233333 7999999999999999999999999853 3332221 156
Q ss_pred EEcCCceEEcC--Cc---eEEcCCC-----EeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeE
Q psy12350 304 VKKPDIAELTP--TG---VRFQDGS-----YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMC 372 (1129)
Q Consensus 304 ~~~~~v~~~~~--~~---v~~~dg~-----~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~ 372 (1129)
..+..|++++. ++ |.+.+++ ++++|.||+|+|++++.+++. +..++..++ ..+....++ .++.|++|
T Consensus 245 ~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~~~-~t~~~~Iy 322 (483)
T 3dgh_A 245 LRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQE-ATNVANIY 322 (483)
T ss_dssp EETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCTTC-BCSSTTEE
T ss_pred EeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEECcCC-ccCCCCEE
Confidence 66777888863 32 6777664 679999999999999998873 345566655 433333332 36789999
Q ss_pred Eecccc-c----ccccccccceeeehhhccc
Q psy12350 373 IIGYTY-R----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 373 ~~G~~~-~----~~~~~~~~~~~~~a~~~~~ 398 (1129)
.+|... . ++.+. .|++.+|.++.+
T Consensus 323 A~GD~~~~~~~~~~~A~--~~g~~aa~~i~g 351 (483)
T 3dgh_A 323 AVGDIIYGKPELTPVAV--LAGRLLARRLYG 351 (483)
T ss_dssp ECSTTBTTSCCCHHHHH--HHHHHHHHHHHS
T ss_pred EEEcccCCCCccHHHHH--HHHHHHHHHHcC
Confidence 999874 2 22344 788888887764
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.9e-22 Score=234.15 Aligned_cols=297 Identities=15% Similarity=0.144 Sum_probs=178.5
Q ss_pred cceEEEEcCChHHHHHHHHhhc-CCCCceEEEEc--------ccCCcCceEecCCCCCCCCCCCCccCcccccccccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTE-PGSGFTCTTFE--------QTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPK 79 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~-~~~~~~v~v~E--------~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~ 79 (1129)
.+||+||||||||++||.+|++ .| ++|+|+| +.+.+||+|.+ .+|. |.+...+.. ....
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~~G--~~V~liE~~~~~~~~~~~~~GG~c~~---~gci----Psk~l~~~a---~~~~ 70 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASLHK--KRVAVIDLQKHHGPPHYAALGGTCVN---VGCV----PKKLMVTGA---NYMD 70 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHC--CCEEEEESCSSSBTTTBSCTTCHHHH---HSHH----HHHHHHHHH---HHHH
T ss_pred cccEEEECCCHHHHHHHHHHHHHcC--CEEEEEecccccccccCCCcCccccC---CCcc----hhhHHHHHH---HHHH
Confidence 4799999999999999999998 65 8999999 35789999984 2221 111111110 0000
Q ss_pred cccccCCCCCCCCCCCC--CCCHHHHHHHHHHHH-----------Hhc-CCcceeEeceeeeeeccccccCCCCceEEec
Q psy12350 80 EIMELSGYHHKGHPDKS--YIAANDVLEYLNDFA-----------DNF-NLRNLCLVNKNVQPLYKHLINIEHPSMCIIG 145 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~--~~~~~~~~~yl~~~~-----------~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~ 145 (1129)
.+.....|.+... .. ..+..++.++.+++. ++. ++ .++.++ ++.+++ ..+.+.+
T Consensus 71 ~~~~~~~~g~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv--~~~~g~-~~~i~~-------~~v~v~~ 138 (490)
T 1fec_A 71 TIRESAGFGWELD--RESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGL--TFHQGF-GALQDN-------HTVLVRE 138 (490)
T ss_dssp HHHHGGGGTEECC--GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTE--EEEESE-EEEEET-------TEEEEES
T ss_pred HHHHHHhcCcccC--CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--EEEEeE-EEEeeC-------CEEEEEe
Confidence 0001111111100 00 123344444433332 333 43 455554 444432 3344432
Q ss_pred c--ccCc-cceEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCC
Q psy12350 146 I--PRDT-VGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDES 222 (1129)
Q Consensus 146 ~--~~~~-~~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (1129)
. .++. ...+.|| +||+||| +.|..|++||.. .+ ..+..+
T Consensus 139 ~~~~~g~~~~~~~~d-----~lviAtG--s~p~~p~i~g~~--~~-----------------~~~~~~------------ 180 (490)
T 1fec_A 139 SADPNSAVLETLDTE-----YILLATG--SWPQHLGIEGDD--LC-----------------ITSNEA------------ 180 (490)
T ss_dssp SSSTTSCEEEEEEEE-----EEEECCC--EEECCCCSBTGG--GC-----------------BCHHHH------------
T ss_pred eccCCCCceEEEEcC-----EEEEeCC--CCCCCCCCCCcc--ce-----------------ecHHHH------------
Confidence 1 0111 1457899 9999999 788888887631 00 000000
Q ss_pred CCCccchhcccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhccc---ccEEEEccccCCcccccC
Q psy12350 223 PVPPVLLKIYFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTE---ATTVFLSHHSEHVKKLRF 299 (1129)
Q Consensus 223 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~---~~~V~lv~r~~~~~~~~~ 299 (1129)
..... ..++++| ||||++|+|+|..|++. |.+|+++++.+.+++...
T Consensus 181 ---------------~~~~~----~~~~vvV-----------iGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d 230 (490)
T 1fec_A 181 ---------------FYLDE----APKRALC-----------VGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFD 230 (490)
T ss_dssp ---------------TTCSS----CCSEEEE-----------ECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSC
T ss_pred ---------------hhhhh----cCCeEEE-----------ECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccccC
Confidence 00000 1233333 89999999999999999 999999999988765322
Q ss_pred CC--------------CeEEcCCceEEcCC-----ceEEcCCCEeecCEEEEcccccccCCCC-CCCCCeEeecCccccc
Q psy12350 300 PN--------------NVVKKPDIAELTPT-----GVRFQDGSYEQVDIILYCTGYTYRYPFL-HESCGIKVVNKNVQPL 359 (1129)
Q Consensus 300 ~~--------------~i~~~~~v~~~~~~-----~v~~~dg~~~~~D~VI~atG~~~~~~~l-~~~~~~~~~~~~~~~l 359 (1129)
++ ++..++.|++++.+ .|.++||+++++|.||+|+|++++.++| -+..++.++++..+..
T Consensus 231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~V 310 (490)
T 1fec_A 231 SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKV 310 (490)
T ss_dssp HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCC
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEE
Confidence 21 46667888888643 3678899889999999999999999865 2345666665443333
Q ss_pred ccccccCCCCCeEEecccccc-cc-cccccceeeehhhccc
Q psy12350 360 YKHLINIEHPSMCIIGYTYRY-PF-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 360 ~~~~~~~~~p~l~~~G~~~~~-~~-~~~~~~~~~~a~~~~~ 398 (1129)
..++ .+++|++|.+|..... ++ .....|++.+|.++.+
T Consensus 311 d~~~-~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g 350 (490)
T 1fec_A 311 DAYS-KTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFA 350 (490)
T ss_dssp CTTC-BCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCC-ccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcC
Confidence 3332 2578999999987542 12 1223788888887764
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-22 Score=240.05 Aligned_cols=308 Identities=14% Similarity=0.133 Sum_probs=175.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC--------CcCceEecCCCCCCCCCCCCccCcccccccccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD--------NVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPK 79 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~--------~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~ 79 (1129)
..+||+||||||||++||..|++ .|++|+|+||++ .+||+|.+ .+|. |.+ .++... ....
T Consensus 31 ~~~DVvVIGgGpaGl~aA~~la~--~G~~V~liEk~~~~~~~~~~~~GGtc~~---~Gci----Psk-~l~~~~--~~~~ 98 (519)
T 3qfa_A 31 YDYDLIIIGGGSGGLAAAKEAAQ--YGKKVMVLDFVTPTPLGTRWGLGGTCVN---VGCI----PKK-LMHQAA--LLGQ 98 (519)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTCCCCCTTCHHHH---HSHH----HHH-HHHHHH--HHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeccCccccccCCCcccccCC---cCcc----chH-HHHHHH--HHHH
Confidence 35799999999999999999999 669999999964 79999984 2221 111 111100 0111
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEe-ceeeeeeccccccCCCCceEEeccccCccceEEecc
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLV-NKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDL 158 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 158 (1129)
....+.+|.++.. .....+...+.++.+.+.+.+.......+ ...|+-+.......+.+.+.+.+ .+++...+.||
T Consensus 99 ~~~~~~~~g~~~~-~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~-~~g~~~~i~~d- 175 (519)
T 3qfa_A 99 ALQDSRNYGWKVE-ETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATN-NKGKEKIYSAE- 175 (519)
T ss_dssp HHHHHHHTTBCCC-SSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEEC-TTCCCCEEEEE-
T ss_pred HHHHHHhcCcccC-CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEc-CCCCEEEEECC-
Confidence 1112222322211 11245677777777766554321000000 01121111111112234444443 22333467899
Q ss_pred eeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccc
Q psy12350 159 QVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFAR 238 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 238 (1129)
+|||||| +.|..|++||.....+ .+..+ .
T Consensus 176 ----~lViATG--s~p~~p~i~G~~~~~~------------------t~~~~---------------------------~ 204 (519)
T 3qfa_A 176 ----RFLIATG--ERPRYLGIPGDKEYCI------------------SSDDL---------------------------F 204 (519)
T ss_dssp ----EEEECCC--EEECCCCCTTHHHHCB------------------CHHHH---------------------------T
T ss_pred ----EEEEECC--CCcCCCCCCCccCceE------------------cHHHH---------------------------h
Confidence 9999999 8899998887321100 00000 0
Q ss_pred cccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeE
Q psy12350 239 CSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVV 304 (1129)
Q Consensus 239 ~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~ 304 (1129)
.... ..++++| ||||++|+|+|..|++.|.+||+++|+ .+++..+++ ++.
T Consensus 205 ~l~~----~~~~vvV-----------IGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~GV~v~ 268 (519)
T 3qfa_A 205 SLPY----CPGKTLV-----------VGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDMANKIGEHMEEHGIKFI 268 (519)
T ss_dssp TCSS----CCCSEEE-----------ECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred hhhh----cCCeEEE-----------ECCcHHHHHHHHHHHHcCCeEEEEecc-cccccCCHHHHHHHHHHHHHCCCEEE
Confidence 0001 1234443 799999999999999999999999985 444332211 344
Q ss_pred EcCCceEE---cC---Cc--eEE--cCCC---EeecCEEEEcccccccCCCCC-CCCCeEee-cCcccccccccccCCCC
Q psy12350 305 KKPDIAEL---TP---TG--VRF--QDGS---YEQVDIILYCTGYTYRYPFLH-ESCGIKVV-NKNVQPLYKHLINIEHP 369 (1129)
Q Consensus 305 ~~~~v~~~---~~---~~--v~~--~dg~---~~~~D~VI~atG~~~~~~~l~-~~~~~~~~-~~~~~~l~~~~~~~~~p 369 (1129)
.+..++++ ++ +. +.+ .+|+ ++++|.||+|+|++++.++|. +..++..+ ++..+....++ .++.|
T Consensus 269 ~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~-~Ts~~ 347 (519)
T 3qfa_A 269 RQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEE-QTNVP 347 (519)
T ss_dssp ESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTTS-BCSST
T ss_pred eCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCCC-ccCCC
Confidence 44444444 32 22 222 4563 458999999999999998852 34566665 33333333332 25789
Q ss_pred CeEEecccc-c-ccc-cccccceeeehhhccc
Q psy12350 370 SMCIIGYTY-R-YPF-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 370 ~l~~~G~~~-~-~~~-~~~~~~~~~~a~~~~~ 398 (1129)
++|++|... . .++ .....|++.+|.++.+
T Consensus 348 ~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g 379 (519)
T 3qfa_A 348 YIYAIGDILEDKVELTPVAIQAGRLLAQRLYA 379 (519)
T ss_dssp TEEECGGGBSSSCCCHHHHHHHHHHHHHHHHS
T ss_pred CEEEEEeccCCCCccHHHHHHHHHHHHHHHcC
Confidence 999999875 2 222 1223788888887764
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-21 Score=231.11 Aligned_cols=282 Identities=15% Similarity=0.181 Sum_probs=173.7
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||+|||||+||++||..|++.+++.+|+|+|+++.+|.... ..+.|.. .... ....
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~--------------~~~~~~~--g~~~--~~~~----- 57 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSC--------------GIALYLG--KEIK--NNDP----- 57 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGG--------------GHHHHHT--TCBG--GGCG-----
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccc--------------cchhhhc--CCcc--cCCH-----
Confidence 489999999999999999999655899999999876542110 0000100 0000 0000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
+++..++.++.+++++ .++++++|+.++. +...+.+.+...++.....|| +||+|||
T Consensus 58 -----------~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~-----~~~~v~v~~~~~g~~~~~~~d-----~lviAtG 114 (452)
T 2cdu_A 58 -----------RGLFYSSPEELSNLGA--NVQMRHQVTNVDP-----ETKTIKVKDLITNEEKTEAYD-----KLIMTTG 114 (452)
T ss_dssp -----------GGGBSCCHHHHHHTTC--EEEESEEEEEEEG-----GGTEEEEEETTTCCEEEEECS-----EEEECCC
T ss_pred -----------HHhhhcCHHHHHHcCC--EEEeCCEEEEEEc-----CCCEEEEEecCCCceEEEECC-----EEEEccC
Confidence 0011111233345566 7888999988875 233455543222334567899 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccc-c-cc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFT-E-FR 247 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~-~~ 247 (1129)
+.|..|++||.... +. . ....+ .+...+. . ..
T Consensus 115 --s~p~~p~i~g~~~~---~v---------~-----~~~~~---------------------------~~~~~~~~~~~~ 148 (452)
T 2cdu_A 115 --SKPTVPPIPGIDSS---RV---------Y-----LCKNY---------------------------NDAKKLFEEAPK 148 (452)
T ss_dssp --EEECCCCCTTTTST---TE---------E-----ECSSH---------------------------HHHHHHHHHGGG
T ss_pred --CCcCCCCCCCCCCC---CE---------E-----EeCcH---------------------------HHHHHHHHHhcc
Confidence 88888888773210 00 0 00000 0001110 0 01
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC---------------CCeEEcCCceEE
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP---------------NNVVKKPDIAEL 312 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~---------------~~i~~~~~v~~~ 312 (1129)
.++++| ||+|++|+|+|..|++.|.+|+++++.+.+++..++ -++..++.|+++
T Consensus 149 ~~~vvV-----------iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 217 (452)
T 2cdu_A 149 AKTITI-----------IGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAF 217 (452)
T ss_dssp CSEEEE-----------ECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEE
T ss_pred CCeEEE-----------ECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEE
Confidence 233333 899999999999999999999999999877662221 156677889988
Q ss_pred cC-Cc-e--EEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc-------
Q psy12350 313 TP-TG-V--RFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP------- 381 (1129)
Q Consensus 313 ~~-~~-v--~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~------- 381 (1129)
++ ++ + +..||+++++|.||+|+|++++.++++. . +.++++..+....++ .+++|++|++|.....+
T Consensus 218 ~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~~~ll~~-~-l~~~~~G~i~Vd~~~-~t~~~~IyA~GD~~~~~~~~~g~~ 294 (452)
T 2cdu_A 218 EEVDDEIITKTLDGKEIKSDIAILCIGFRPNTELLKG-K-VAMLDNGAIITDEYM-HSSNRDIFAAGDSAAVHYNPTNSN 294 (452)
T ss_dssp EEETTEEEEEETTSCEEEESEEEECCCEEECCGGGTT-T-SCBCTTSCBCCCTTS-BCSSTTEEECSTTBCEEETTTTEE
T ss_pred EcCCCeEEEEEeCCCEEECCEEEECcCCCCCHHHHHH-h-hhcCCCCCEEECCCc-CcCCCCEEEcceEEEeccccCCCe
Confidence 75 32 3 3458888999999999999999998864 3 555544433222222 24789999999875421
Q ss_pred ----c-cccccceeeehhhcc
Q psy12350 382 ----F-LHESCGIKVVNKNVQ 397 (1129)
Q Consensus 382 ----~-~~~~~~~~~~a~~~~ 397 (1129)
+ .....|++.+|.++.
T Consensus 295 ~~~~~~~~A~~~g~~aa~~i~ 315 (452)
T 2cdu_A 295 AYIPLATNAVRQGRLVGLNLT 315 (452)
T ss_dssp ECCCCHHHHHHHHHHHHHTSS
T ss_pred eecchHHHHHHHHHHHHHHhC
Confidence 1 122366666666665
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-21 Score=230.56 Aligned_cols=291 Identities=13% Similarity=0.092 Sum_probs=176.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+|||||||||+||..|++ .|++|+|+|| +.+||+|.+ .+|. |.+...+.. ..+.....++.|.
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~--~G~~V~liEk-~~~GG~~~~---~gci----p~k~l~~~~---~~~~~~~~~~~~g 71 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAA--LGKKVAIAEE-FRYGGTCVI---RGCV----PKKLYVYAS---QFAEHFEDAAGFG 71 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHT--TTCCEEEEES-SCTTHHHHH---HSHH----HHHHHHHHH---HHHHHHHHGGGGT
T ss_pred CCcEEEECcCHHHHHHHHHHHh--CCCEEEEEeC-CCCCCcccc---cCch----hhHHHHHHH---HHHHHHHHHHhcC
Confidence 4799999999999999999999 6699999999 789999984 2221 111100100 0111111222222
Q ss_pred CCCCCCCCCCCHHHHHHHHH-----------HHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLN-----------DFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~-----------~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
++.. ....+..++.++.+ .+.++.++ .+..+ ++..++ .+.+.+. .......||
T Consensus 72 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~i~-------~~~v~~~----~~~~~~~~d 135 (463)
T 4dna_A 72 WTVG--ESRFDWAKLVAAKEQEIARLEGLYRKGLANAGA--EILDT-RAELAG-------PNTVKLL----ASGKTVTAE 135 (463)
T ss_dssp EEEC--CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEES-CEEESS-------SSEEEET----TTTEEEEEE
T ss_pred cccC--CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEee-------CCEEEEe----cCCeEEEeC
Confidence 1100 01123333333333 33333333 33333 333332 2333331 123456788
Q ss_pred ceeeeEEEEecccCCCCC-ccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPS-KAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~-~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
+||+||| +.|. .|++||... + ..+..+
T Consensus 136 -----~lviAtG--~~p~~~p~i~G~~~--~-----------------~~~~~~-------------------------- 163 (463)
T 4dna_A 136 -----RIVIAVG--GHPSPHDALPGHEL--C-----------------ITSNEA-------------------------- 163 (463)
T ss_dssp -----EEEECCC--EEECCCTTSTTGGG--C-----------------BCHHHH--------------------------
T ss_pred -----EEEEecC--CCcccCCCCCCccc--c-----------------ccHHHH--------------------------
Confidence 9999999 7888 888876210 0 000000
Q ss_pred cccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CC
Q psy12350 237 ARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NN 302 (1129)
Q Consensus 237 ~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~ 302 (1129)
..... ..++++| ||+|++|+|+|..+++.|.+|+++++.+.+++...+ -+
T Consensus 164 -~~~~~----~~~~v~V-----------iGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 227 (463)
T 4dna_A 164 -FDLPA----LPESILI-----------AGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIR 227 (463)
T ss_dssp -TTCSS----CCSEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCE
T ss_pred -hhhhc----CCCeEEE-----------ECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCE
Confidence 00001 1233333 899999999999999999999999999876643222 14
Q ss_pred eEEcCCceEEcCC-----ceE-EcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEec
Q psy12350 303 VVKKPDIAELTPT-----GVR-FQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIG 375 (1129)
Q Consensus 303 i~~~~~v~~~~~~-----~v~-~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G 375 (1129)
+..++.|++++.+ .|. ++||+ +++|.||+|+|++++.++|. +..++.++++..+....++- ++.|++|++|
T Consensus 228 i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~-t~~~~iya~G 305 (463)
T 4dna_A 228 ILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSR-TSTPGIYALG 305 (463)
T ss_dssp EECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCB-CSSTTEEECS
T ss_pred EECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCC-CCCCCEEEEE
Confidence 5567788888643 366 77887 99999999999999999852 34567776655443333322 6889999999
Q ss_pred ccccc-cc-cccccceeeehhhccc
Q psy12350 376 YTYRY-PF-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 376 ~~~~~-~~-~~~~~~~~~~a~~~~~ 398 (1129)
..... ++ .....|++.+|.++.+
T Consensus 306 D~~~~~~~~~~A~~~g~~aa~~i~g 330 (463)
T 4dna_A 306 DVTDRVQLTPVAIHEAMCFIETEYK 330 (463)
T ss_dssp GGGSSCCCHHHHHHHHHHHHHHHHS
T ss_pred ecCCCCCChHHHHHHHHHHHHHHcC
Confidence 87542 22 1234888888888765
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-21 Score=224.18 Aligned_cols=276 Identities=15% Similarity=0.214 Sum_probs=175.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+|||||+||++||..|++.|...+|+|+|+++ |+.|.. +.+.. . +.
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~--g~~~~~---------------~~l~~-------~---~~--- 53 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD--GRSYSK---------------PMLST-------G---FS--- 53 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC--CCEECG---------------GGGGG-------T---TT---
T ss_pred CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC--CCccCc---------------ccccH-------H---Hh---
Confidence 479999999999999999999977667899999965 443331 11111 0 00
Q ss_pred CCCCCCCCCCCHHHHH-HHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 89 HKGHPDKSYIAANDVL-EYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~-~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
......++. .+++.+++++++ .++++++|+.++. +.+.+.+. .....|| +||+|
T Consensus 54 -------~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~-----~~~~v~~~------~~~~~~d-----~lviA 108 (384)
T 2v3a_A 54 -------KNKDADGLAMAEPGAMAEQLNA--RILTHTRVTGIDP-----GHQRIWIG------EEEVRYR-----DLVLA 108 (384)
T ss_dssp -------TTCCHHHHEEECHHHHHHHTTC--EEECSCCCCEEEG-----GGTEEEET------TEEEECS-----EEEEC
T ss_pred -------CCCCHHHhhccCHHHHHHhCCc--EEEeCCEEEEEEC-----CCCEEEEC------CcEEECC-----EEEEe
Confidence 011223343 245666677776 6788888888875 23444431 1346789 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| +.|..|++||.....+ .. +.. +..+....+.+ ..
T Consensus 109 tG--~~p~~p~i~g~~~~~v------------~~-----~~~-----------------------~~~~~~~~~~~--~~ 144 (384)
T 2v3a_A 109 WG--AEPIRVPVEGDAQDAL------------YP-----IND-----------------------LEDYARFRQAA--AG 144 (384)
T ss_dssp CC--EEECCCCCBSTTTTCE------------EE-----CSS-----------------------HHHHHHHHHHH--TT
T ss_pred CC--CCcCCCCCCCcCcCCE------------EE-----ECC-----------------------HHHHHHHHHhh--cc
Confidence 99 7888888877321100 00 000 00000000001 01
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC---------------CCeEEcCCceEE
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP---------------NNVVKKPDIAEL 312 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~---------------~~i~~~~~v~~~ 312 (1129)
.++++| ||+|++|+|+|..|++.|.+|+++++.+.+++...+ -++.....|+++
T Consensus 145 ~~~v~V-----------iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i 213 (384)
T 2v3a_A 145 KRRVLL-----------LGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASL 213 (384)
T ss_dssp CCEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEE
T ss_pred CCeEEE-----------ECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 233333 899999999999999999999999998876553221 145667788888
Q ss_pred cCC----ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc-----cc-
Q psy12350 313 TPT----GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY-----PF- 382 (1129)
Q Consensus 313 ~~~----~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~-----~~- 382 (1129)
+.+ .|.++||+++++|.||+|+|++++.++++ ..++.++. . +....+ +.+++|++|++|..... ++
T Consensus 214 ~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~-~~g~~~~~-g-i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~~ 289 (384)
T 2v3a_A 214 KKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAF-AAGLAVNR-G-IVVDRS-LRTSHANIYALGDCAEVDGLNLLYV 289 (384)
T ss_dssp EEETTEEEEEETTSCEEEESEEEECSCEEECCHHHH-HTTCCBSS-S-EEECTT-CBCSSTTEEECGGGEEETTBCCCSH
T ss_pred EecCCEEEEEECCCCEEECCEEEECcCCCcCHHHHH-HCCCCCCC-C-EEECCC-CCCCCCCEEEeeeeeeECCCCcchH
Confidence 642 37788999999999999999999987764 34455542 2 222222 22678999999987521 11
Q ss_pred cccccceeeehhhccc
Q psy12350 383 LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 383 ~~~~~~~~~~a~~~~~ 398 (1129)
.....||+.+|.++.+
T Consensus 290 ~~a~~~g~~~a~~i~g 305 (384)
T 2v3a_A 290 MPLMACARALAQTLAG 305 (384)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcC
Confidence 1123677777776653
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-21 Score=231.54 Aligned_cols=298 Identities=14% Similarity=0.152 Sum_probs=171.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCC---ceEEEEcccCCcCceEecCCC-CCCCCCCCCccCcccccc-cccCCccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSG---FTCTTFEQTDNVGGTWVYTEQ-TGRDQYGLPVHSSMYKSL-KTNLPKEIME 83 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~---~~v~v~E~~~~~GG~w~~~~~-~~~~~~~~~~~~~~y~~l-~~~~~~~~~~ 83 (1129)
.++|+|||||||||+||..|++.|.. .+|+||||++.+| |..... +++ ....+.+..+ ....+...+.
T Consensus 30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g--~~~~~~~~~~-----~~~~~~~~~l~~~~~p~~~~~ 102 (463)
T 3s5w_A 30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVSQS-----ELQISFLKDLVSLRNPTSPYS 102 (463)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC--SSGGGCCSSC-----BCSSCTTSSSSTTTCTTCTTS
T ss_pred cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC--CcCCCCCCCC-----cCCcchhhccccccCCCCCCC
Confidence 35899999999999999999994322 8999999999887 442100 111 0000001100 0011111111
Q ss_pred cCCCCCC-------CCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEecccc-CccceEE
Q psy12350 84 LSGYHHK-------GHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPR-DTVGFYL 155 (1129)
Q Consensus 84 ~~d~~~~-------~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~ 155 (1129)
|.+|... ......++.+.++.+|++.++++++. .++++++|+.++........|.+.+..... ++...+.
T Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~ 180 (463)
T 3s5w_A 103 FVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQE--QSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRT 180 (463)
T ss_dssp HHHHHHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTT--TEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEE
T ss_pred hhHhhhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCC--eEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEE
Confidence 1110000 00123467889999999999999875 899999999998642112335445543222 2222567
Q ss_pred ecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccc
Q psy12350 156 FDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFES 235 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 235 (1129)
|| +||+||| +.|.+|+... .+.+. ....++..+.
T Consensus 181 ~d-----~lVlAtG--~~p~~p~~~~----~~~~~-----------~~~~~~~~~~------------------------ 214 (463)
T 3s5w_A 181 TR-----ALVVSPG--GTPRIPQVFR----ALKGD-----------GRVFHHSQYL------------------------ 214 (463)
T ss_dssp ES-----EEEECCC--CEECCCGGGG----GGTTC-----------TTEEEGGGHH------------------------
T ss_pred eC-----EEEECCC--CCCCCcchhh----hcCCC-----------CcEEECHHHH------------------------
Confidence 88 9999999 5777775310 11110 0011111110
Q ss_pred ccccccccc--cccccceeEeeceeeeecCCCCCCCCcccchhhhccc--ccEEEEccccCCccccc-------------
Q psy12350 236 FARCSEDFT--EFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTE--ATTVFLSHHSEHVKKLR------------- 298 (1129)
Q Consensus 236 ~~~~~~~~~--~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~--~~~V~lv~r~~~~~~~~------------- 298 (1129)
...+.+. ....++++ | ||||.+|+|+|..|++. +.+|++++|++.+++..
T Consensus 215 --~~~~~~~~~~~~~~~vv-------V----vGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~ 281 (463)
T 3s5w_A 215 --EHMAKQPCSSGKPMKIA-------I----IGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKF 281 (463)
T ss_dssp --HHHCC-------CEEEE-------E----ECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHH
T ss_pred --hhHHHhhhcccCCCeEE-------E----ECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhH
Confidence 0011110 00123333 3 89999999999999999 99999999998664311
Q ss_pred -----------------------------------------------CCCCeEEcCCceEEcCC--c--eEEc---CCCE
Q psy12350 299 -----------------------------------------------FPNNVVKKPDIAELTPT--G--VRFQ---DGSY 324 (1129)
Q Consensus 299 -----------------------------------------------~~~~i~~~~~v~~~~~~--~--v~~~---dg~~ 324 (1129)
..-++..++.|++++.+ + |.+. +|+.
T Consensus 282 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~ 361 (463)
T 3s5w_A 282 TDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGEL 361 (463)
T ss_dssp HHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCE
T ss_pred HHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCe
Confidence 01123445567777543 2 6666 7765
Q ss_pred --eecCEEEEccccccc--CCCCCCC----CCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 325 --EQVDIILYCTGYTYR--YPFLHES----CGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 325 --~~~D~VI~atG~~~~--~~~l~~~----~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
+++|.||+|||++++ .++|..- .++.++.+...... ...+|++|.+|...
T Consensus 362 ~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~g~i~v~~~~~~~~~----~~~~~~Ifa~G~~~ 419 (463)
T 3s5w_A 362 SVETYDAVILATGYERQLHRQLLEPLAEYLGDHEIGRDYRLQTD----ERCKVAIYAQGFSQ 419 (463)
T ss_dssp EEEEESEEEECCCEECCC-CTTTGGGGGGBC--CCCTTSBCCBC----TTBCSEEEESSCCH
T ss_pred EEEECCEEEEeeCCCCCCccchhHHHHHHhCCcccCcccccccC----CCCCCeEEEcCCCc
Confidence 799999999999998 6777631 22334433222111 11267799998753
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.3e-22 Score=229.52 Aligned_cols=258 Identities=12% Similarity=0.128 Sum_probs=160.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
++|+|||||+||++||.+|++.|...+|+|||+++.++ |. +..+++...... ..
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~----------------------y~--~~~l~~~~l~~~-~~- 55 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLP----------------------YQ--RPPLSKAYLKSG-GD- 55 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSS----------------------BC--SGGGGTGGGGSC-CC-
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCC----------------------CC--CccCCHHHHCCC-CC-
Confidence 68999999999999999999966545999999987432 11 001111111100 00
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
... +..+...+..+.++ .++. ++|+.+++ +.+.+... ......|| +||+|||
T Consensus 56 ----~~~------~~~~~~~~~~~~~i--~~~~-~~v~~id~-----~~~~v~~~-----~g~~~~~d-----~lvlAtG 107 (404)
T 3fg2_P 56 ----PNS------LMFRPEKFFQDQAI--ELIS-DRMVSIDR-----EGRKLLLA-----SGTAIEYG-----HLVLATG 107 (404)
T ss_dssp ----TTS------SBSSCHHHHHHTTE--EEEC-CCEEEEET-----TTTEEEES-----SSCEEECS-----EEEECCC
T ss_pred ----HHH------ccCCCHHHHHhCCC--EEEE-EEEEEEEC-----CCCEEEEC-----CCCEEECC-----EEEEeeC
Confidence 000 00111233344555 6666 88888876 33333321 22456799 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccccc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKD 249 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1129)
+.|..|++||... .+ .+.... .+.+......+ ...+
T Consensus 108 --~~p~~~~i~g~~~---~~---------------v~~~~~----------------------~~d~~~l~~~~--~~~~ 143 (404)
T 3fg2_P 108 --ARNRMLDVPNASL---PD---------------VLYLRT----------------------LDESEVLRQRM--PDKK 143 (404)
T ss_dssp --EEECCCCSTTTTS---TT---------------EECCSS----------------------HHHHHHHHHHG--GGCS
T ss_pred --CCccCCCCCCCCC---Cc---------------EEEECC----------------------HHHHHHHHHHh--hcCC
Confidence 7888888877321 11 000000 00000000000 1123
Q ss_pred ceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC---------------CCeEEcCCceEEcC
Q psy12350 250 KYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP---------------NNVVKKPDIAELTP 314 (1129)
Q Consensus 250 ~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~---------------~~i~~~~~v~~~~~ 314 (1129)
+++| ||+|.+|+|+|..+++.+.+|+++++.+.+++...+ -++..+..|+++++
T Consensus 144 ~vvV-----------iGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 212 (404)
T 3fg2_P 144 HVVV-----------IGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAA 212 (404)
T ss_dssp EEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEE
T ss_pred eEEE-----------ECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEe
Confidence 4443 799999999999999999999999999877653222 14556778888865
Q ss_pred C-----ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc
Q psy12350 315 T-----GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY 380 (1129)
Q Consensus 315 ~-----~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~ 380 (1129)
+ +|.++||+++++|.||+|+|++++.++++ ..++.++....++-+.+ +++|++|++|.....
T Consensus 213 ~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~-~~gl~~~~Gi~vd~~~~---t~~~~iya~GD~a~~ 279 (404)
T 3fg2_P 213 EGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAA-AAGLPTAAGIIVDQQLL---TSDPHISAIGDCALF 279 (404)
T ss_dssp ETTEEEEEEETTSCEEECSEEEECCCEEECCHHHH-HTTCCBSSSEEECTTSB---CSSTTEEECGGGEEE
T ss_pred cCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHH-hCCCCCCCCEEECCCcc---cCCCCEEEeecceee
Confidence 3 48889999999999999999999988875 34455543222222222 578999999987543
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-22 Score=238.71 Aligned_cols=309 Identities=15% Similarity=0.140 Sum_probs=179.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcc--------cCCcCceEecCCCCCCCCCCCCccCcccccccccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQ--------TDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPK 79 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~--------~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~ 79 (1129)
..+||+||||||||++||..|++ .|++|+|+|| ...+||+|.+ .+|. |.+ .++... ....
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~--~G~~V~liEk~~~~~~~~~~~~GGtc~~---~gci----Psk-~l~~~~--~~~~ 72 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQ--LGKKVAVADYVEPSPRGTKWGLGGTCVN---VGCI----PKK-LMHQAA--LLGG 72 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTSCCCCTTCHHHH---HSHH----HHH-HHHHHH--HHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEEecccccccccCCcCCeecc---cCCc----ccH-HHHHHH--HHHH
Confidence 35899999999999999999999 5699999998 5679999984 2331 111 111100 0111
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEe-ceeeeeeccccccCCCCceEEeccccCccceEEecc
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLV-NKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDL 158 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 158 (1129)
.......|.+... ....+...++.++.+++.+++.......+ ...|+-+.......+.+.+.+.+ .++....+.||
T Consensus 73 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~-~~g~~~~~~~d- 149 (488)
T 3dgz_A 73 MIRDAHHYGWEVA-QPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVD-KGGKATLLSAE- 149 (488)
T ss_dssp HHHHHHHTTCCCC-SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEEC-TTSCEEEEEEE-
T ss_pred HHHHHHhcCcccC-CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEe-CCCceEEEECC-
Confidence 1112222322211 12345677777777666554421000000 01111111111112334455543 22233467899
Q ss_pred eeeeEEEEecccCCCCCccc-cccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccc
Q psy12350 159 QVRFFLQLMQGHVTLPSKAE-MLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFA 237 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~~p~~p~-i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 237 (1129)
+|||||| +.|..|+ +||.....+ .+..+
T Consensus 150 ----~lViATG--s~p~~p~~i~G~~~~~~------------------~~~~~--------------------------- 178 (488)
T 3dgz_A 150 ----HIVIATG--GRPRYPTQVKGALEYGI------------------TSDDI--------------------------- 178 (488)
T ss_dssp ----EEEECCC--EEECCCSSCBTHHHHCB------------------CHHHH---------------------------
T ss_pred ----EEEEcCC--CCCCCCCCCCCcccccC------------------cHHHH---------------------------
Confidence 9999999 8899998 887421110 00000
Q ss_pred ccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCe
Q psy12350 238 RCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNV 303 (1129)
Q Consensus 238 ~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i 303 (1129)
. .+. ...++++| ||+|++|+|+|..|++.|.+||+++|.. +++...+ -++
T Consensus 179 ~---~~~-~~~~~vvV-----------iGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~l~~~d~~~~~~l~~~l~~~gv~~ 242 (488)
T 3dgz_A 179 F---WLK-ESPGKTLV-----------VGASYVALECAGFLTGIGLDTTVMMRSI-PLRGFDQQMSSLVTEHMESHGTQF 242 (488)
T ss_dssp T---TCS-SCCCSEEE-----------ECCSHHHHHHHHHHHHTTCCEEEEESSC-SSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred H---hhh-hcCCeEEE-----------ECCCHHHHHHHHHHHHcCCceEEEEcCc-ccccCCHHHHHHHHHHHHHCCCEE
Confidence 0 000 01233443 7999999999999999999999999874 3332221 145
Q ss_pred EEcCCceEEcC---Cc--eEEcC---CC--EeecCEEEEcccccccCCCCC-CCCCeEee-cCcccccccccccCCCCCe
Q psy12350 304 VKKPDIAELTP---TG--VRFQD---GS--YEQVDIILYCTGYTYRYPFLH-ESCGIKVV-NKNVQPLYKHLINIEHPSM 371 (1129)
Q Consensus 304 ~~~~~v~~~~~---~~--v~~~d---g~--~~~~D~VI~atG~~~~~~~l~-~~~~~~~~-~~~~~~l~~~~~~~~~p~l 371 (1129)
..+..+++++. +. |.+.+ |+ ++++|.||+|+|++++.++|. +..++..+ ++..+....++ .++.|++
T Consensus 243 ~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~-~t~~~~I 321 (488)
T 3dgz_A 243 LKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQE-ATSVPHI 321 (488)
T ss_dssp EETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTS-BCSSTTE
T ss_pred EeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCC-ccCCCCE
Confidence 55666777743 22 55654 55 368999999999999998853 23556665 44433333322 2578999
Q ss_pred EEecccc-ccc-c-cccccceeeehhhcccc
Q psy12350 372 CIIGYTY-RYP-F-LHESCGIKVVNKNVQPL 399 (1129)
Q Consensus 372 ~~~G~~~-~~~-~-~~~~~~~~~~a~~~~~~ 399 (1129)
|++|... ..| + .....|++.+|.++.+.
T Consensus 322 yA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~ 352 (488)
T 3dgz_A 322 YAIGDVAEGRPELTPTAIKAGKLLAQRLFGK 352 (488)
T ss_dssp EECGGGBTTCCCCHHHHHHHHHHHHHHHHSC
T ss_pred EEeEEecCCCCcchhHHHHHHHHHHHHHcCC
Confidence 9999874 222 1 12237888888887653
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-21 Score=229.42 Aligned_cols=266 Identities=11% Similarity=0.150 Sum_probs=163.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
|||+|||||+||++||..|++.+++.+|+|+|+++.+|.. . | ..+.|. ....
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~-~------~-------~~~~~~------~~~~-------- 52 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL-S------A-------GMQLYL------EGKV-------- 52 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBC-G------G-------GHHHHH------TTSS--------
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcc-c------c-------cchhhh------cCcc--------
Confidence 4899999999999999999996558999999998765411 0 0 000000 0000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
.+.+++..++.+..+++++ .++++++|+.++. +...+.+.+...++.....|| +||+|||
T Consensus 53 --------~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~-----~~~~v~~~~~~~g~~~~~~~d-----~lviAtG 112 (447)
T 1nhp_A 53 --------KDVNSVRYMTGEKMESRGV--NVFSNTEITAIQP-----KEHQVTVKDLVSGEERVENYD-----KLIISPG 112 (447)
T ss_dssp --------CCGGGSBSCCHHHHHHTTC--EEEETEEEEEEET-----TTTEEEEEETTTCCEEEEECS-----EEEECCC
T ss_pred --------CCHHHhhcCCHHHHHHCCC--EEEECCEEEEEeC-----CCCEEEEEecCCCceEEEeCC-----EEEEcCC
Confidence 0001111112233345566 7888999988865 334455543222322346799 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccccc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKD 249 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1129)
+.|..|++||... .+. .+...+ +.+....+.+.....+
T Consensus 113 --~~p~~p~i~G~~~---~~v--------------~~~~~~-----------------------~~~~~l~~~~~~~~~~ 150 (447)
T 1nhp_A 113 --AVPFELDIPGKDL---DNI--------------YLMRGR-----------------------QWAIKLKQKTVDPEVN 150 (447)
T ss_dssp --EEECCCCSTTTTS---BSE--------------ECCCHH-----------------------HHHHHHHHHHTCTTCC
T ss_pred --CCcCCCCCCCCCC---CCe--------------EEECCH-----------------------HHHHHHHHHhhhcCCC
Confidence 7888888877321 010 000000 0000000000000123
Q ss_pred ceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC-------------C--CeEEcCCceEEcC
Q psy12350 250 KYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP-------------N--NVVKKPDIAELTP 314 (1129)
Q Consensus 250 ~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~-------------~--~i~~~~~v~~~~~ 314 (1129)
+++| ||+|++|+|+|..+++.|.+|+++++.+.+++...+ . ++..+..|+++++
T Consensus 151 ~vvI-----------iG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~ 219 (447)
T 1nhp_A 151 NVVV-----------IGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEG 219 (447)
T ss_dssp EEEE-----------ECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEEC
T ss_pred eEEE-----------ECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEc
Confidence 4443 799999999999999999999999998876552111 1 4566778888875
Q ss_pred Cc-e--EEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccc
Q psy12350 315 TG-V--RFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYR 379 (1129)
Q Consensus 315 ~~-v--~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~ 379 (1129)
++ + +..+|+++++|.||+|+|++++.++++. . +.++++..+....++ .+++|++|++|....
T Consensus 220 ~~~v~~v~~~~~~i~~d~vi~a~G~~p~~~~~~~-~-~~~~~~G~i~Vd~~~-~t~~~~Iya~GD~~~ 284 (447)
T 1nhp_A 220 DGRVQKVVTDKNAYDADLVVVAVGVRPNTAWLKG-T-LELHPNGLIKTDEYM-RTSEPDVFAVGDATL 284 (447)
T ss_dssp SSBCCEEEESSCEEECSEEEECSCEEESCGGGTT-T-SCBCTTSCBCCCTTC-BCSSTTEEECGGGSC
T ss_pred cCcEEEEEECCCEEECCEEEECcCCCCChHHHHh-h-hhhcCCCcEEECccc-cCCCCCEEEeeeEEE
Confidence 43 2 3346778999999999999999998864 3 555444332222222 247899999998754
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8e-22 Score=234.33 Aligned_cols=298 Identities=13% Similarity=0.169 Sum_probs=170.8
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSG 86 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d 86 (1129)
.+++||||||||+||+++|+.|++ .+++|+|+|+++.. .| ...+|+.+...+..
T Consensus 40 ~~KprVVIIGgG~AGl~~A~~L~~--~~~~VtLId~~~~~----~~-------------~PlL~~va~G~l~~------- 93 (502)
T 4g6h_A 40 SDKPNVLILGSGWGAISFLKHIDT--KKYNVSIISPRSYF----LF-------------TPLLPSAPVGTVDE------- 93 (502)
T ss_dssp CSSCEEEEECSSHHHHHHHHHSCT--TTCEEEEEESSSEE----EC-------------GGGGGGTTTTSSCG-------
T ss_pred CCCCCEEEECCcHHHHHHHHHhhh--CCCcEEEECCCCCc----cc-------------ccchhHHhhccccH-------
Confidence 345799999999999999999998 67999999997631 11 01112111111100
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEe-ceeeeeeccccccCCCCceEEecc---------------ccCc
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLV-NKNVQPLYKHLINIEHPSMCIIGI---------------PRDT 150 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~---------------~~~~ 150 (1129)
.++..-++++.... ...++| ..+|+.|+. +...+++... ...+
T Consensus 94 --------------~~i~~p~~~~~~~~--~~~v~~~~~~v~~ID~-----~~k~V~l~~~~~~~~~~~~~~~~~~~~~~ 152 (502)
T 4g6h_A 94 --------------KSIIEPIVNFALKK--KGNVTYYEAEATSINP-----DRNTVTIKSLSAVSQLYQPENHLGLHQAE 152 (502)
T ss_dssp --------------GGGEEEHHHHHTTC--SSCEEEEEEEEEEEEG-----GGTEEEEEEEEEEEECSSSCCCCCCCTTC
T ss_pred --------------HHhhhhHHHHHHhh--cCCeEEEEEEEEEEEh-----hhCEEEEeecccceeecccccccccccCC
Confidence 01110112222111 112222 346777765 3344444321 1223
Q ss_pred cceEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchh
Q psy12350 151 VGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLK 230 (1129)
Q Consensus 151 ~~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 230 (1129)
.....|| +|||||| +.|+.|++||..+..+. ..+.+++..++......
T Consensus 153 ~~~i~YD-----~LViAtG--s~~~~~~ipG~~e~a~~----l~t~~dA~~ir~~l~~~--------------------- 200 (502)
T 4g6h_A 153 PAEIKYD-----YLISAVG--AEPNTFGIPGVTDYGHF----LKEIPNSLEIRRTFAAN--------------------- 200 (502)
T ss_dssp CEEEECS-----EEEECCC--CEECCTTCTTHHHHCEE----CSSHHHHHHHHHHHHHH---------------------
T ss_pred ceEEeCC-----EEEEcCC--cccccCCccCcccccCC----CCCHHHHHHHHHHHHHH---------------------
Confidence 4567899 9999999 88999999885432211 11222222222111110
Q ss_pred ccccccccccccc-ccccccceeEeeceeeeecCCCCCCCCcccchhhhcccc--------------cEEEEccccCCcc
Q psy12350 231 IYFESFARCSEDF-TEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA--------------TTVFLSHHSEHVK 295 (1129)
Q Consensus 231 ~~~~~~~~~~~~~-~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~--------------~~V~lv~r~~~~~ 295 (1129)
++.+......- ......+++| ||||++|+|+|.+|++.+ .+|+|+++.+.++
T Consensus 201 --~e~a~~~~~~~~~~~~~~~vvV-----------vGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il 267 (502)
T 4g6h_A 201 --LEKANLLPKGDPERRRLLSIVV-----------VGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL 267 (502)
T ss_dssp --HHHHHHSCTTCHHHHHHTEEEE-----------ECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS
T ss_pred --HHHHhcccccchhhccccceEE-----------ECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc
Confidence 00000000000 0011123444 799999999999988654 5799999999887
Q ss_pred cccCCC--------------CeEEcCCceEEcCCceEE----cCCC----EeecCEEEEcccccccC---------CC-C
Q psy12350 296 KLRFPN--------------NVVKKPDIAELTPTGVRF----QDGS----YEQVDIILYCTGYTYRY---------PF-L 343 (1129)
Q Consensus 296 ~~~~~~--------------~i~~~~~v~~~~~~~v~~----~dg~----~~~~D~VI~atG~~~~~---------~~-l 343 (1129)
+...+. ++..++.|++++++++.+ +||+ ++++|.||||+|.+++. +. .
T Consensus 268 ~~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~ 347 (502)
T 4g6h_A 268 NMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQN 347 (502)
T ss_dssp TTSCHHHHHHHHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHHSGGGT
T ss_pred cCCCHHHHHHHHHHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHHhccccc
Confidence 643321 456677899999887654 4664 57999999999998862 11 1
Q ss_pred CCCCCeEeecCcccccccccccCCCCCeEEecccccccccccccceeeehhhccccc
Q psy12350 344 HESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYPFLHESCGIKVVNKNVQPLY 400 (1129)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~~~~~~~~~~~~a~~~~~~~ 400 (1129)
....++.+|+....+.+.++|.++| .+..+.+.+++.+. +||+++|+++.+..
T Consensus 348 ~~~g~I~Vd~~lq~~~~~~IfAiGD--~a~~~~p~~a~~A~--qqg~~~A~ni~~~~ 400 (502)
T 4g6h_A 348 SSKRGLAVNDFLQVKGSNNIFAIGD--NAFAGLPPTAQVAH--QEAEYLAKNFDKMA 400 (502)
T ss_dssp TCCSSEEBCTTSBBTTCSSEEECGG--GEESSSCCCHHHHH--HHHHHHHHHHHHHT
T ss_pred cCCCceeECCccccCCCCCEEEEEc--ccCCCCCCchHHHH--HHHHHHHHHHHHHh
Confidence 2224466665544434444444444 33334445566677 99999999987653
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-22 Score=236.42 Aligned_cols=293 Identities=17% Similarity=0.202 Sum_probs=176.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+||||||||++||..|++ .|++|+|+||+ .+||+|.+ .+| .....++... .....+..+..|.
T Consensus 20 ~~dVvIIGgG~aGl~aA~~la~--~G~~V~liE~~-~~GG~~~~---~gc-----~p~k~l~~~~--~~~~~~~~~~~~g 86 (478)
T 3dk9_A 20 SYDYLVIGGGSGGLASARRAAE--LGARAAVVESH-KLGGTCVN---VGC-----VPKKVMWNTA--VHSEFMHDHADYG 86 (478)
T ss_dssp ECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CTTHHHHH---HSH-----HHHHHHHHHH--HHHHHHTTTTTTT
T ss_pred CCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecC-CCCCcccc---cCc-----cchHHHHHHH--HHHHHHHHHHhcC
Confidence 4799999999999999999999 66999999985 79999974 222 1111111110 0111112223333
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCC---------cceeEeceeeeeeccccccCCCCceEEeccccCccceEEecce
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNL---------RNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQ 159 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~---------~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 159 (1129)
++.. ....+..++.++.+.+.+.+.. ...+..++ +..++. ..+.+. . ......||
T Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~~-----~~~~v~--~----~g~~~~~d-- 150 (478)
T 3dk9_A 87 FPSC--EGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGH-AAFTSD-----PKPTIE--V----SGKKYTAP-- 150 (478)
T ss_dssp SCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEECSC-----SSCEEE--E----TTEEEECS--
T ss_pred ccCC--CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEeeC-----CeEEEE--E----CCEEEEee--
Confidence 3221 1244666777766655544310 01222222 222211 112222 1 12346788
Q ss_pred eeeEEEEecccCCCCCcc---ccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 160 VRFFLQLMQGHVTLPSKA---EMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 160 ~~~~lvvAtG~~~~p~~p---~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
+|||||| +.|..| ++||.. . ...+..+
T Consensus 151 ---~lviAtG--~~p~~p~~~~i~G~~--~-----------------~~~~~~~-------------------------- 180 (478)
T 3dk9_A 151 ---HILIATG--GMPSTPHESQIPGAS--L-----------------GITSDGF-------------------------- 180 (478)
T ss_dssp ---CEEECCC--EEECCCCTTTSTTGG--G-----------------SBCHHHH--------------------------
T ss_pred ---EEEEccC--CCCCCCCcCCCCCCc--e-----------------eEchHHh--------------------------
Confidence 9999999 788888 776621 0 0000000
Q ss_pred cccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------C
Q psy12350 237 ARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------N 302 (1129)
Q Consensus 237 ~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~ 302 (1129)
.....+ .++++| ||||++|+|+|..|++.|.+|++++|.+.+++...++ +
T Consensus 181 -~~~~~~----~~~vvV-----------iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~ 244 (478)
T 3dk9_A 181 -FQLEEL----PGRSVI-----------VGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVE 244 (478)
T ss_dssp -TTCCSC----CSEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCE
T ss_pred -hchhhc----CccEEE-----------ECCCHHHHHHHHHHHHcCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCE
Confidence 000111 233333 8999999999999999999999999988776543321 3
Q ss_pred eEEcCCceEEcC--Cc----eEEcC---C----CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCC
Q psy12350 303 VVKKPDIAELTP--TG----VRFQD---G----SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEH 368 (1129)
Q Consensus 303 i~~~~~v~~~~~--~~----v~~~d---g----~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~ 368 (1129)
+..+..|++++. ++ +.+.+ | +++++|.||+|+|++++.++|. +..++..+++..+....++ .++.
T Consensus 245 i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~ 323 (478)
T 3dk9_A 245 VLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQ-NTNV 323 (478)
T ss_dssp EETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTC-BCSS
T ss_pred EEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCc-ccCC
Confidence 444556788763 23 55665 2 5679999999999999998652 3455666555433333332 3678
Q ss_pred CCeEEecccccc----cccccccceeeehhhcccc
Q psy12350 369 PSMCIIGYTYRY----PFLHESCGIKVVNKNVQPL 399 (1129)
Q Consensus 369 p~l~~~G~~~~~----~~~~~~~~~~~~a~~~~~~ 399 (1129)
|++|++|..... +.+. .|++.+|.++.+.
T Consensus 324 ~~IyA~GD~~~~~~~~~~A~--~~g~~aa~~i~~~ 356 (478)
T 3dk9_A 324 KGIYAVGDVCGKALLTPVAI--AAGRKLAHRLFEY 356 (478)
T ss_dssp TTEEECGGGGCSSCCHHHHH--HHHHHHHHHHHSC
T ss_pred CCEEEEEecCCCCccHhHHH--HHHHHHHHHHcCC
Confidence 999999987532 3344 7888888877643
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-22 Score=236.39 Aligned_cols=298 Identities=14% Similarity=0.151 Sum_probs=175.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCcccc--ccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIM--ELSG 86 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~--~~~d 86 (1129)
.+||+||||||||++||..|++ .|++|+|||+++.+||+|.+ .+|. | ...++.... ....+. .+..
T Consensus 6 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~liE~~~~~GG~~~~---~g~~----P-sk~l~~~~~--~~~~~~~~~~~~ 73 (474)
T 1zmd_A 6 DADVTVIGSGPGGYVAAIKAAQ--LGFKTVCIEKNETLGGTCLN---VGCI----P-SKALLNNSH--YYHMAHGTDFAS 73 (474)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSSSSSHHHHH---HSHH----H-HHHHHHHHH--HHHHHHSSHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCcCCcccc---cCcc----c-hHHHHHHHH--HHHHhhhhhHhh
Confidence 4799999999999999999999 56899999999899999974 1221 1 111110000 000000 1111
Q ss_pred CCCCCCCCCCCCCHHHHHHH-----------HHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEY-----------LNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL 155 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1129)
+.++. .....+..++..+ +..+.++.++ .++.++.+ .++ .+.+.+... ++....+.
T Consensus 74 ~g~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~-~~~-------~~~~~v~~~-~gg~~~~~ 140 (474)
T 1zmd_A 74 RGIEM--SEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKV--VHVNGYGK-ITG-------KNQVTATKA-DGGTQVID 140 (474)
T ss_dssp TTEEE--SCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESEEE-EEE-------TTEEEEECT-TSCEEEEE
T ss_pred Ccccc--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEE-Eec-------CCEEEEEec-CCCcEEEE
Confidence 11110 0001123333332 2444455555 66666543 232 233344321 11224578
Q ss_pred ecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccc
Q psy12350 156 FDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFES 235 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 235 (1129)
|| +||+||| +.|..|++||.....+ .++..+
T Consensus 141 ~d-----~lViAtG--s~p~~p~i~g~~~~~v-----------------~t~~~~------------------------- 171 (474)
T 1zmd_A 141 TK-----NILIATG--SEVTPFPGITIDEDTI-----------------VSSTGA------------------------- 171 (474)
T ss_dssp EE-----EEEECCC--EEECCCTTCCCCSSSE-----------------ECHHHH-------------------------
T ss_pred eC-----EEEECCC--CCCCCCCCCCCCcCcE-----------------EcHHHH-------------------------
Confidence 89 9999999 7788887766211000 000000
Q ss_pred ccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccc-ccCC--------------
Q psy12350 236 FARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKK-LRFP-------------- 300 (1129)
Q Consensus 236 ~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~-~~~~-------------- 300 (1129)
..... ..++++ | ||||++|+|+|..|++.|.+|+++++.+.+++ ...+
T Consensus 172 --~~~~~----~~~~vv-------V----iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~G 234 (474)
T 1zmd_A 172 --LSLKK----VPEKMV-------V----IGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQG 234 (474)
T ss_dssp --TTCSS----CCSEEE-------E----ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTT
T ss_pred --hhccc----cCceEE-------E----ECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCC
Confidence 00000 123333 3 89999999999999999999999999988766 2221
Q ss_pred CCeEEcCCceEEcCC--c-eEE-------cCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCC
Q psy12350 301 NNVVKKPDIAELTPT--G-VRF-------QDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHP 369 (1129)
Q Consensus 301 ~~i~~~~~v~~~~~~--~-v~~-------~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p 369 (1129)
-++..+..|++++++ + +.+ .+++++++|.||+|+|++++.++|. +..++.++++..+....++ .+++|
T Consensus 235 v~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~~ 313 (474)
T 1zmd_A 235 FKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRF-QTKIP 313 (474)
T ss_dssp CEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTC-BCSST
T ss_pred CEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCC-ccCCC
Confidence 144556678888643 2 443 3566789999999999999998843 2344555544333333332 26789
Q ss_pred CeEEecccccccc--cccccceeeehhhccc
Q psy12350 370 SMCIIGYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 370 ~l~~~G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
++|++|.....|. .....|++.+|.++.+
T Consensus 314 ~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 344 (474)
T 1zmd_A 314 NIYAIGDVVAGPMLAHKAEDEGIICVEGMAG 344 (474)
T ss_dssp TEEECGGGSSSCCCHHHHHHHHHHHHHHHTT
T ss_pred CEEEeeecCCCCccHHHHHHHHHHHHHHhcC
Confidence 9999998854321 1223788888887764
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-21 Score=227.56 Aligned_cols=263 Identities=14% Similarity=0.160 Sum_probs=161.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+|||||+||++||..|++.|...+|+|+|+++.++ |. +..+++....-..
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~----------------------~~--~~~l~~~~~~~~~-- 57 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIP----------------------HH--LPPLSKAYLAGKA-- 57 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCC----------------------BC--SGGGGTTTTTTCS--
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCC----------------------Cc--CCCCcHHHhCCCC--
Confidence 479999999999999999999966444899999976432 10 0011111110000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
..+++.....++.++.++ .++++++|+.+++ +.+.+.+. + .....|| +||+||
T Consensus 58 ----------~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~-----~~~~v~~~---~--g~~~~~d-----~lviAt 110 (431)
T 1q1r_A 58 ----------TAESLYLRTPDAYAAQNI--QLLGGTQVTAINR-----DRQQVILS---D--GRALDYD-----RLVLAT 110 (431)
T ss_dssp ----------CSGGGBSSCHHHHHHTTE--EEECSCCEEEEET-----TTTEEEET---T--SCEEECS-----EEEECC
T ss_pred ----------ChHHhcccCHHHHHhCCC--EEEeCCEEEEEEC-----CCCEEEEC---C--CCEEECC-----EEEEcC
Confidence 000000001223345555 7888999998875 23334331 1 2357799 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|..|++||.....-.+. +.... .+.+....+.+ ...
T Consensus 111 G--~~p~~~~i~G~~~~~~~~v---------------~~~~~----------------------~~d~~~l~~~l--~~~ 149 (431)
T 1q1r_A 111 G--GRPRPLPVASGAVGKANNF---------------RYLRT----------------------LEDAECIRRQL--IAD 149 (431)
T ss_dssp C--EEECCCGGGTTHHHHSTTE---------------EESSS----------------------HHHHHHHHHTC--CTT
T ss_pred C--CCccCCCCCCcccCCCceE---------------EEECC----------------------HHHHHHHHHHh--hcC
Confidence 9 7888888877321110000 00000 00000000011 012
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC---------------CeEEcCCceEEc
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------------NVVKKPDIAELT 313 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------------~i~~~~~v~~~~ 313 (1129)
++++| ||+|++|+|+|..|++.|.+|+++++.+.+++...+. ++..+..|++++
T Consensus 150 ~~vvV-----------iGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~ 218 (431)
T 1q1r_A 150 NRLVV-----------IGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFE 218 (431)
T ss_dssp CEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEE
T ss_pred CeEEE-----------ECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEE
Confidence 33333 8999999999999999999999999988776532221 455677888886
Q ss_pred C---C----ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc
Q psy12350 314 P---T----GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY 380 (1129)
Q Consensus 314 ~---~----~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~ 380 (1129)
+ + .|.++||+++++|.||+|+|++++.++++ ..++.++....++-+. .+++|++|++|.....
T Consensus 219 ~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~-~~gl~~~~gi~Vd~~~---~ts~~~IyA~GD~~~~ 288 (431)
T 1q1r_A 219 MSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELAS-AAGLQVDNGIVINEHM---QTSDPLIMAVGDCARF 288 (431)
T ss_dssp ECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHHH-HTTCCBSSSEECCTTS---BCSSTTEEECGGGEEE
T ss_pred eccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhh-ccCCCCCCCEEECCCc---ccCCCCEEEEEeEEEE
Confidence 4 2 37788999999999999999999988765 3445544322222222 2578999999987543
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-21 Score=230.88 Aligned_cols=266 Identities=14% Similarity=0.202 Sum_probs=164.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||+|||||+||++||..|++.+.+.+|+|||+++.+|+... + .+.+. ...
T Consensus 37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-----~---------~~~~~------~~~--------- 87 (480)
T 3cgb_A 37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQC-----G---------LPYVI------SGA--------- 87 (480)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGG-----G---------HHHHH------TTS---------
T ss_pred ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCC-----C---------cchhh------cCC---------
Confidence 699999999999999999999655899999999876542110 0 00000 000
Q ss_pred CCCCCCCCCCHHHHH-HHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 90 KGHPDKSYIAANDVL-EYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~-~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
....+++. .+.+.+.+++++ .++++++|+.++. +...+.+.+..+++.....|| +||+||
T Consensus 88 -------~~~~~~l~~~~~~~~~~~~gv--~~~~~~~v~~i~~-----~~~~v~v~~~~~g~~~~~~~d-----~lviAt 148 (480)
T 3cgb_A 88 -------IASTEKLIARNVKTFRDKYGI--DAKVRHEVTKVDT-----EKKIVYAEHTKTKDVFEFSYD-----RLLIAT 148 (480)
T ss_dssp -------SSCGGGGBSSCHHHHHHTTCC--EEESSEEEEEEET-----TTTEEEEEETTTCCEEEEECS-----EEEECC
T ss_pred -------cCCHHHhhhcCHHHHHhhcCC--EEEeCCEEEEEEC-----CCCEEEEEEcCCCceEEEEcC-----EEEECC
Confidence 00011111 112334455666 7888999998875 334555543222322357899 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|..|++||... .+.+ +... .+.+....+.+.....
T Consensus 149 G--~~p~~p~i~G~~~---~~v~--------------~~~~-----------------------~~~~~~l~~~~~~~~~ 186 (480)
T 3cgb_A 149 G--VRPVMPEWEGRDL---QGVH--------------LLKT-----------------------IPDAERILKTLETNKV 186 (480)
T ss_dssp C--EEECCCCCBTTTS---BTEE--------------CCSS-----------------------HHHHHHHHHHHHSSCC
T ss_pred C--CcccCCCCCCccC---CCEE--------------EeCC-----------------------HHHHHHHHHHhhhcCC
Confidence 9 7888888877321 0100 0000 0000000000100012
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCeEEcCCceEEcC
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNVVKKPDIAELTP 314 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i~~~~~v~~~~~ 314 (1129)
++++| ||||++|+|+|..|++.|.+|+++++.+.+++...+ -++..++.|+++++
T Consensus 187 ~~vvV-----------iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 255 (480)
T 3cgb_A 187 EDVTI-----------IGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKG 255 (480)
T ss_dssp CEEEE-----------ECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEE
T ss_pred CeEEE-----------ECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEc
Confidence 33433 899999999999999999999999998876552211 14555778888875
Q ss_pred Cc-e--EEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 315 TG-V--RFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 315 ~~-v--~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
++ + +..++.++++|.||+|+|++++.++++ ..++.++++..+....++ ..++|++|++|...
T Consensus 256 ~~~v~~v~~~~~~i~~D~vi~a~G~~p~~~~l~-~~g~~~~~~G~I~Vd~~~-~ts~p~IyA~GD~~ 320 (480)
T 3cgb_A 256 NERVEAVETDKGTYKADLVLVSVGVKPNTDFLE-GTNIRTNHKGAIEVNAYM-QTNVQDVYAAGDCA 320 (480)
T ss_dssp SSBEEEEEETTEEEECSEEEECSCEEESCGGGT-TSCCCBCTTSCBCCCTTS-BCSSTTEEECGGGB
T ss_pred CCcEEEEEECCCEEEcCEEEECcCCCcChHHHH-hCCcccCCCCCEEECCCc-cCCCCCEEEeeeEE
Confidence 43 2 334566889999999999999998886 455666554433333322 24689999999875
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.6e-21 Score=227.01 Aligned_cols=296 Identities=16% Similarity=0.181 Sum_probs=171.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+|||||+||++||.+|++ .|++|+|||++ .+||+|.+ .+|. | ...++...... ......+.+
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~-~~GG~~~~---~g~i----p-~k~l~~~~~~~--~~~~~~~~~ 69 (467)
T 1zk7_A 3 PPVQVAVIGSGGAAMAAALKAVE--QGAQVTLIERG-TIGGTCVN---VGCV----P-SKIMIRAAHIA--HLRRESPFD 69 (467)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESS-STTHHHHH---HSHH----H-HHHHHHHHHHH--HHHHCCTTT
T ss_pred CcCCEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC-CCCccccC---CCcc----c-hHHHHHHHHHH--HHHhhhhhc
Confidence 35899999999999999999999 56899999997 79999984 2221 1 11111100000 000000000
Q ss_pred -CCCCCCCCCCCCHHHHH-------HHHH-----HHHHhc-CCcceeEeceeeeeeccccccCCCCceEEeccccCccce
Q psy12350 88 -HHKGHPDKSYIAANDVL-------EYLN-----DFADNF-NLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGF 153 (1129)
Q Consensus 88 -~~~~~~~~~~~~~~~~~-------~yl~-----~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1129)
.++. ........++. ++++ +..++. ++ .++.+ +++.++. +.+.+.. .+++...
T Consensus 70 ~g~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~~g-~~~~~~~-------~~~~v~~-~~g~~~~ 136 (467)
T 1zk7_A 70 GGIAA--TVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAI--TVVHG-EARFKDD-------QSLTVRL-NEGGERV 136 (467)
T ss_dssp TTSCC--CCCCCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTE--EEEEE-EEEEEET-------TEEEEEE-TTSSEEE
T ss_pred CCccC--CCCccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCe--EEEEE-EEEEccC-------CEEEEEe-CCCceEE
Confidence 0000 01112233333 2332 112222 32 44444 3444432 3344432 2222245
Q ss_pred EEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccc
Q psy12350 154 YLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYF 233 (1129)
Q Consensus 154 ~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 233 (1129)
..|| +||+||| +.|..|++||.....+ ..+...
T Consensus 137 ~~~d-----~lviAtG--s~p~~p~i~G~~~~~~-----------------~~~~~~----------------------- 169 (467)
T 1zk7_A 137 VMFD-----RCLVATG--ASPAVPPIPGLKESPY-----------------WTSTEA----------------------- 169 (467)
T ss_dssp EECS-----EEEECCC--EEECCCCCTTTTTSCC-----------------BCHHHH-----------------------
T ss_pred EEeC-----EEEEeCC--CCCCCCCCCCCCcCce-----------------ecHHHH-----------------------
Confidence 7799 9999999 7888888876311000 000000
Q ss_pred ccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC------------
Q psy12350 234 ESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN------------ 301 (1129)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~------------ 301 (1129)
...+. ..++++ | ||+|++|+|+|..|++.|.+|+++++.+.+++ ..+.
T Consensus 170 ----~~~~~----~~~~vv-------V----iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~ 229 (467)
T 1zk7_A 170 ----LASDT----IPERLA-------V----IGSSVVALELAQAFARLGSKVTVLARNTLFFR-EDPAIGEAVTAAFRAE 229 (467)
T ss_dssp ----HHCSS----CCSEEE-------E----ECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-SCHHHHHHHHHHHHHT
T ss_pred ----hcccc----cCCEEE-------E----ECCCHHHHHHHHHHHHcCCEEEEEEECCccCC-CCHHHHHHHHHHHHhC
Confidence 00000 123333 3 89999999999999999999999999988765 2211
Q ss_pred --CeEEcCCceEEcCCc----eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEe
Q psy12350 302 --NVVKKPDIAELTPTG----VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCII 374 (1129)
Q Consensus 302 --~i~~~~~v~~~~~~~----v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~ 374 (1129)
++..++.|+++++++ |.++ +.++++|.||+|+|++++.+++. +..++.++++..+....++ .+++|++|++
T Consensus 230 Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~-~t~~~~iya~ 307 (467)
T 1zk7_A 230 GIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGM-RTSNPNIYAA 307 (467)
T ss_dssp TCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTC-BCSSTTEEEC
T ss_pred CCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCc-ccCCCCEEEE
Confidence 355567788886432 4444 56789999999999999987642 2345555544433332222 2578999999
Q ss_pred cccccccc--cccccceeeehhhccc
Q psy12350 375 GYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 375 G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
|.....|. .....|++.+|.++.+
T Consensus 308 GD~~~~~~~~~~A~~~g~~aa~~i~~ 333 (467)
T 1zk7_A 308 GDCTDQPQFVYVAAAAGTRAAINMTG 333 (467)
T ss_dssp STTBSSCCCHHHHHHHHHHHHHHHTT
T ss_pred eccCCCcccHHHHHHHHHHHHHHHcC
Confidence 98754321 1223788888887764
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-21 Score=230.16 Aligned_cols=285 Identities=13% Similarity=0.109 Sum_probs=174.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccC-----cccccccccCCcccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHS-----SMYKSLKTNLPKEIM 82 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~-----~~y~~l~~~~~~~~~ 82 (1129)
..+||+||||||||++||.+|++ .|++|+|||+ +.+||+|.+ .+|. |.+. ..|+.++
T Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~--~g~~V~lie~-~~~GG~~~~---~g~~----Psk~l~~~~~~~~~~~-------- 65 (458)
T 1lvl_A 4 IQTTLLIIGGGPGGYVAAIRAGQ--LGIPTVLVEG-QALGGTCLN---IGCI----PSKALIHVAEQFHQAS-------- 65 (458)
T ss_dssp EECSEEEECCSHHHHHHHHHHHH--HTCCEEEECS-SCTTHHHHH---HSHH----HHHHHHHHHHHHHHHH--------
T ss_pred CcCCEEEECCCHHHHHHHHHHHH--CCCEEEEEcc-CCCCCcCCC---cCcH----hHHHHHHHHHHHHHHh--------
Confidence 34799999999999999999999 5689999999 789999984 2221 1110 0111111
Q ss_pred ccCC---CCCCCCCCCCCCCHHHHHHHH-----------HHHHHhcCCcceeEeceeeeeeccccccCCCCceEEecccc
Q psy12350 83 ELSG---YHHKGHPDKSYIAANDVLEYL-----------NDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPR 148 (1129)
Q Consensus 83 ~~~d---~~~~~~~~~~~~~~~~~~~yl-----------~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~ 148 (1129)
.+.. |.++. ....++.+++..+. +.+.++.++ .++.++.+. ++ .+++.+.
T Consensus 66 ~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~~~~-~~-------~~~v~v~---- 129 (458)
T 1lvl_A 66 RFTEPSPLGISV--ASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGV--KVVHGWAKV-LD-------GKQVEVD---- 129 (458)
T ss_dssp HTTSCCTTCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEECSCEEE-EE-------TTEEEET----
T ss_pred hcccccccCccc--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEEEEEEE-cc-------CCEEEEe----
Confidence 1111 22211 11123445554443 344455555 566666543 22 2333332
Q ss_pred CccceEEecceeeeEEEEecccCCCCCccc-cccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCcc
Q psy12350 149 DTVGFYLFDLQVRFFLQLMQGHVTLPSKAE-MLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPV 227 (1129)
Q Consensus 149 ~~~~~~~~d~~~~~~lvvAtG~~~~p~~p~-i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 227 (1129)
+ ....|| +|||||| +.|..|+ +|.+. . ...+..+
T Consensus 130 ~--~~~~~d-----~lviATG--s~p~~~~~~~~~~------~-------------v~~~~~~----------------- 164 (458)
T 1lvl_A 130 G--QRIQCE-----HLLLATG--SSSVELPMLPLGG------P-------------VISSTEA----------------- 164 (458)
T ss_dssp T--EEEECS-----EEEECCC--EEECCBTTBCCBT------T-------------EECHHHH-----------------
T ss_pred e--EEEEeC-----EEEEeCC--CCCCCCCCCCccC------c-------------EecHHHH-----------------
Confidence 1 456799 9999999 6777665 42100 0 0000000
Q ss_pred chhcccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC------
Q psy12350 228 LLKIYFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN------ 301 (1129)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~------ 301 (1129)
. .+. ...+++ +| ||||++|+|+|..|++.|.+|+++++.+.+++...++
T Consensus 165 ----------~---~~~-~~~~~v-------vV----iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~ 219 (458)
T 1lvl_A 165 ----------L---APK-ALPQHL-------VV----VGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVA 219 (458)
T ss_dssp ----------T---CCS-SCCSEE-------EE----ECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHH
T ss_pred ----------h---hhh-ccCCeE-------EE----ECcCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHH
Confidence 0 000 012333 33 8999999999999999999999999998876532211
Q ss_pred --------CeEEcCCceEEcCCceEEc--CC--CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCC
Q psy12350 302 --------NVVKKPDIAELTPTGVRFQ--DG--SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEH 368 (1129)
Q Consensus 302 --------~i~~~~~v~~~~~~~v~~~--dg--~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~ 368 (1129)
++..+..|++++++++.+. +| +++++|.||+|||++++.+++. +..++.++++ .+....++ .+++
T Consensus 220 ~~l~~~gv~i~~~~~v~~i~~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~~-~t~~ 297 (458)
T 1lvl_A 220 ESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDERC-QTSM 297 (458)
T ss_dssp HHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTTC-BCSS
T ss_pred HHHHHCCCEEEECCEEEEEEeCCEEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCCC-cCCC
Confidence 3455677888876435554 57 5789999999999999998752 3455666654 44444432 3678
Q ss_pred CCeEEecccccccc--cccccceeeehhhccc
Q psy12350 369 PSMCIIGYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 369 p~l~~~G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
|++|++|.....|. .....||+.+|.++.+
T Consensus 298 ~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g 329 (458)
T 1lvl_A 298 HNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAG 329 (458)
T ss_dssp TTEEECGGGGCSSCCHHHHHHHHHHHHHHHTT
T ss_pred CCEEEeeccCCCcccHHHHHHHHHHHHHHhcC
Confidence 99999998754321 1123777777777763
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-22 Score=235.82 Aligned_cols=291 Identities=15% Similarity=0.149 Sum_probs=174.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+|||||||||+||..|++ .|++|+|||| +.+||+|.+ .+|. |.+...+.. ..+.....+.+|.
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~--~G~~V~liEk-~~~GG~~~~---~gci----p~k~l~~~a---~~~~~~~~~~~~g 92 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGA--LGKRVAIAEE-YRIGGTCVI---RGCV----PKKLYFYAS---QYAQEFSKSIGFG 92 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHH--TTCCEEEEES-SCTTHHHHH---HSHH----HHHHHHHHH---HHHHHHHHHGGGT
T ss_pred CCCEEEECcCHHHHHHHHHHHh--CcCEEEEEeC-CCCCCceec---cCcc----ccHHHHHHH---HHHHHHHHHHhCC
Confidence 4799999999999999999999 6699999999 789999984 2221 111101100 0111111222222
Q ss_pred CCCCCCCCCCCHHHHHHH-----------HHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 89 HKGHPDKSYIAANDVLEY-----------LNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
++.. ....+...+.++ +..+.++.++ .+..+ ++..++. +.+.+. .......||
T Consensus 93 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~~~~i~~-------~~v~v~----~~~~~~~~d 156 (484)
T 3o0h_A 93 WKYA--DPIFNWEKLVAAKNKEISRLEGLYREGLQNSNV--HIYES-RAVFVDE-------HTLELS----VTGERISAE 156 (484)
T ss_dssp BCCC--CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEES-CEEEEET-------TEEEET----TTCCEEEEE
T ss_pred cccC--CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEe-EEEEeeC-------CEEEEe----cCCeEEEeC
Confidence 2211 011233333333 2333333333 33333 3333322 233321 123456788
Q ss_pred ceeeeEEEEecccCCCCC-ccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPS-KAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~-~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
+||+||| +.|. .|++||... + .
T Consensus 157 -----~lviAtG--~~p~~~p~i~G~~~--~-----------------~------------------------------- 179 (484)
T 3o0h_A 157 -----KILIATG--AKIVSNSAIKGSDL--C-----------------L------------------------------- 179 (484)
T ss_dssp -----EEEECCC--EEECCC--CBTGGG--S-----------------B-------------------------------
T ss_pred -----EEEEccC--CCcccCCCCCCccc--c-----------------c-------------------------------
Confidence 9999999 7788 887876310 0 0
Q ss_pred ccccccccc-ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------
Q psy12350 237 ARCSEDFTE-FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN-------------- 301 (1129)
Q Consensus 237 ~~~~~~~~~-~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~-------------- 301 (1129)
...+.+.. ...++++| ||+|++|+|+|..+++.|.+|+++++.+.+++...+.
T Consensus 180 -~~~~~~~~~~~~~~v~V-----------iGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv 247 (484)
T 3o0h_A 180 -TSNEIFDLEKLPKSIVI-----------VGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGI 247 (484)
T ss_dssp -CTTTGGGCSSCCSEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTC
T ss_pred -cHHHHHhHHhcCCcEEE-----------ECcCHHHHHHHHHHHHcCCeEEEEECCCccccccCHHHHHHHHHHHHHCCC
Confidence 00000100 01233333 8999999999999999999999999998765532221
Q ss_pred CeEEcCCceEEcCC----ceEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecc
Q psy12350 302 NVVKKPDIAELTPT----GVRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGY 376 (1129)
Q Consensus 302 ~i~~~~~v~~~~~~----~v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~ 376 (1129)
++..++.|++++.+ .|.++||+++++|.||+|+|++++..+|. +..++.++++..+....++ .++.|++|++|.
T Consensus 248 ~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~~~Iya~GD 326 (484)
T 3o0h_A 248 SIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKM-TTNVSHIWAVGD 326 (484)
T ss_dssp EEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTS-BCSSTTEEECGG
T ss_pred EEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCC-CCCCCCEEEEEe
Confidence 45556788888654 37888999999999999999999998853 2344555554433332222 267899999998
Q ss_pred cccc-ccc-ccccceeeehhhccc
Q psy12350 377 TYRY-PFL-HESCGIKVVNKNVQP 398 (1129)
Q Consensus 377 ~~~~-~~~-~~~~~~~~~a~~~~~ 398 (1129)
.... +++ ....|++.+|.++.+
T Consensus 327 ~~~~~~~~~~A~~~g~~aa~~i~~ 350 (484)
T 3o0h_A 327 VTGHIQLTPVAIHDAMCFVKNAFE 350 (484)
T ss_dssp GGTSCCCHHHHHHHHHHHHHHHHC
T ss_pred cCCCCcCHHHHHHHHHHHHHHHcC
Confidence 7542 221 233788888887764
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-21 Score=225.39 Aligned_cols=256 Identities=15% Similarity=0.169 Sum_probs=162.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||+||++||..|++.|...+|+|+|+++.++.. .+ .+++....- ..
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~-----------------~~-------~~~~~~~~~-~~ 60 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYD-----------------RP-------PLSKDFMAH-GD 60 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBC-----------------SG-------GGGTHHHHH-CC
T ss_pred CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCccc-----------------CC-------CCCHHHhCC-Cc
Confidence 357999999999999999999996654579999997754210 00 011111000 00
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
+ ...+ ++ +++++++ .++++++|+.+++ +.+.+.+. + .....|| +||+|
T Consensus 61 --~---~~~~---------~~-~~~~~~v--~~~~~~~v~~i~~-----~~~~v~~~---~--g~~~~~d-----~lviA 108 (408)
T 2gqw_A 61 --A---EKIR---------LD-CKRAPEV--EWLLGVTAQSFDP-----QAHTVALS---D--GRTLPYG-----TLVLA 108 (408)
T ss_dssp --G---GGSB---------CC-CTTSCSC--EEEETCCEEEEET-----TTTEEEET---T--SCEEECS-----EEEEC
T ss_pred --h---hhhh---------HH-HHHHCCC--EEEcCCEEEEEEC-----CCCEEEEC---C--CCEEECC-----EEEEC
Confidence 0 0000 01 2344555 7888999998876 34555442 1 2357799 99999
Q ss_pred cccCCCCCcccc-ccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 168 QGHVTLPSKAEM-LADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 168 tG~~~~p~~p~i-~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
|| +.|..|++ ||.. .+. +.... .+.+....+.+ .
T Consensus 109 tG--~~~~~~~i~~G~~----~~v---------------~~~~~----------------------~~~~~~l~~~~--~ 143 (408)
T 2gqw_A 109 TG--AAPRALPTLQGAT----MPV---------------HTLRT----------------------LEDARRIQAGL--R 143 (408)
T ss_dssp CC--EEECCCGGGTTCS----SCE---------------EECCS----------------------HHHHHHHHTTC--C
T ss_pred CC--CCCCCCCccCCCC----CcE---------------EEECC----------------------HHHHHHHHHHh--h
Confidence 99 78888888 7732 110 00000 00000000011 0
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC---------------CCeEEcCCceE
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP---------------NNVVKKPDIAE 311 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~---------------~~i~~~~~v~~ 311 (1129)
..++++| ||+|++|+|+|..|++.|.+||++++.+.+++...+ -++..++.|++
T Consensus 144 ~~~~vvV-----------iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 212 (408)
T 2gqw_A 144 PQSRLLI-----------VGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTG 212 (408)
T ss_dssp TTCEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEE
T ss_pred cCCeEEE-----------ECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEE
Confidence 1233433 899999999999999999999999999877653221 14666788999
Q ss_pred EcCCceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc
Q psy12350 312 LTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY 380 (1129)
Q Consensus 312 ~~~~~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~ 380 (1129)
++++.|+++||+++++|.||+|+|++++.++++ ..++..+....++-+. .+++|++|++|.....
T Consensus 213 i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~-~~gl~~~~gi~Vd~~~---~t~~~~IyA~GD~~~~ 277 (408)
T 2gqw_A 213 SVDGVVLLDDGTRIAADMVVVGIGVLANDALAR-AAGLACDDGIFVDAYG---RTTCPDVYALGDVTRQ 277 (408)
T ss_dssp EETTEEEETTSCEEECSEEEECSCEEECCHHHH-HHTCCBSSSEECCTTC---BCSSTTEEECGGGEEE
T ss_pred EECCEEEECCCCEEEcCEEEECcCCCccHHHHH-hCCCCCCCCEEECCCC---ccCCCCEEEEEEEEEe
Confidence 874478999999999999999999999988765 2334443221222222 2578999999987543
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-21 Score=232.47 Aligned_cols=298 Identities=16% Similarity=0.214 Sum_probs=175.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+|||||+||++||..|++ .|++|+|+|+++.+||+|.+ .+|. | ...+.... .....+..+..+
T Consensus 5 ~~~dVvIIGaG~aGl~aA~~l~~--~G~~V~liE~~~~~GG~~~~---~g~~----p-sk~ll~~~--~~~~~~~~~~~~ 72 (482)
T 1ojt_A 5 AEYDVVVLGGGPGGYSAAFAAAD--EGLKVAIVERYKTLGGVCLN---VGCI----P-SKALLHNA--AVIDEVRHLAAN 72 (482)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSCSSHHHHH---HSHH----H-HHHHHHHH--HHHHHHHHGGGG
T ss_pred CcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCCceee---eccc----c-hHHHHHHH--HHHHHHHHHHhC
Confidence 35899999999999999999999 66999999999999999974 1220 1 00000000 000000001111
Q ss_pred CCCCCCCCCCCCHHHHHHH-----------HHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccc---------
Q psy12350 88 HHKGHPDKSYIAANDVLEY-----------LNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIP--------- 147 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~--------- 147 (1129)
.++. .........+..+ ++.++++.++ .+++++.+. ++ .+.+.+...+
T Consensus 73 gi~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~~-~~-------~~~v~v~~~~g~~~~~~~~ 140 (482)
T 1ojt_A 73 GIKY--PEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKV--DVIQGDGQF-LD-------PHHLEVSLTAGDAYEQAAP 140 (482)
T ss_dssp TCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEEEEEEE-EE-------TTEEEEEEEEEEETTEEEE
T ss_pred Cccc--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEeeEEEE-cc-------CCEEEEEecCCcccccccc
Confidence 1110 0011233333332 3344555555 667776553 22 2233332111
Q ss_pred cCccceEEecceeeeEEEEecccCCCCCccc-cccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCc
Q psy12350 148 RDTVGFYLFDLQVRFFLQLMQGHVTLPSKAE-MLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPP 226 (1129)
Q Consensus 148 ~~~~~~~~~d~~~~~~lvvAtG~~~~p~~p~-i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 226 (1129)
.++.....|| +||+||| +.|..|+ +|.+. . ...+..
T Consensus 141 ~g~~~~i~ad-----~lViAtG--s~p~~~~~i~~~~--~-----------------v~~~~~----------------- 177 (482)
T 1ojt_A 141 TGEKKIVAFK-----NCIIAAG--SRVTKLPFIPEDP--R-----------------IIDSSG----------------- 177 (482)
T ss_dssp EEEEEEEEEE-----EEEECCC--EEECCCSSCCCCT--T-----------------EECHHH-----------------
T ss_pred cCcceEEEcC-----EEEECCC--CCCCCCCCCCccC--c-----------------EEcHHH-----------------
Confidence 1112356788 9999999 6677765 33100 0 000000
Q ss_pred cchhcccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC-----
Q psy12350 227 VLLKIYFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN----- 301 (1129)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~----- 301 (1129)
...+. .. +++++| ||||++|+|+|..|++.|.+||++++.+.+++...++
T Consensus 178 -------------~~~~~--~~------~~~vvV----iGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l 232 (482)
T 1ojt_A 178 -------------ALALK--EV------PGKLLI----IGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVW 232 (482)
T ss_dssp -------------HTTCC--CC------CSEEEE----ESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHH
T ss_pred -------------Hhccc--cc------CCeEEE----ECCCHHHHHHHHHHHHcCCeEEEEEECCccccccCHHHHHHH
Confidence 00010 01 233333 8999999999999999999999999998876643221
Q ss_pred ---------CeEEcCCceEEcCC----ceEEcC----CCEeecCEEEEcccccccCCCCC-CCCCeEeecCccccccccc
Q psy12350 302 ---------NVVKKPDIAELTPT----GVRFQD----GSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHL 363 (1129)
Q Consensus 302 ---------~i~~~~~v~~~~~~----~v~~~d----g~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~ 363 (1129)
++..+..|++++++ .|.++| |+++++|.||+|+|++++.++|. +..++.++++..+....++
T Consensus 233 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~ 312 (482)
T 1ojt_A 233 QKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQM 312 (482)
T ss_dssp HHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTTS
T ss_pred HHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCCc
Confidence 45556778888643 267777 77889999999999999998852 3456666554433332222
Q ss_pred ccCCCCCeEEeccccccc-c-cccccceeeehhhccc
Q psy12350 364 INIEHPSMCIIGYTYRYP-F-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 364 ~~~~~p~l~~~G~~~~~~-~-~~~~~~~~~~a~~~~~ 398 (1129)
.+++|++|++|.....| + .....|++.+|.++.+
T Consensus 313 -~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g 348 (482)
T 1ojt_A 313 -RTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAG 348 (482)
T ss_dssp -BCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTT
T ss_pred -ccCCCCEEEEEcccCCCccHHHHHHHHHHHHHHHcC
Confidence 25789999999875422 1 1223777777777764
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.2e-21 Score=211.91 Aligned_cols=280 Identities=14% Similarity=0.137 Sum_probs=168.9
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSG 86 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d 86 (1129)
|+.+||+|||||||||+||.+|++ .+++|+|||++ ..||.+.. .| ++
T Consensus 4 M~~yDVvIIGaGpAGlsAA~~lar--~g~~v~lie~~-~~gg~~~~----------------~~--------------~~ 50 (304)
T 4fk1_A 4 MKYIDCAVIGAGPAGLNASLVLGR--ARKQIALFDNN-TNRNRVTQ----------------NS--------------HG 50 (304)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEECS-CCGGGGSS----------------CB--------------CC
T ss_pred CCCcCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCC-CCCCeeee----------------ec--------------CC
Confidence 456899999999999999999999 66999999995 46665431 01 11
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
|+. ..-.+..++.+...+.+.+++. ...++..+..+... +....++.+ .....+.|| +|||
T Consensus 51 ~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~v~~---~~g~~~~a~-----~lii 111 (304)
T 4fk1_A 51 FIT-----RDGIKPEEFKEIGLNEVMKYPS--VHYYEKTVVMITKQ----STGLFEIVT---KDHTKYLAE-----RVLL 111 (304)
T ss_dssp STT-----CTTBCHHHHHHHHHHHHTTSTT--EEEEECCEEEEEEC----TTSCEEEEE---TTCCEEEEE-----EEEE
T ss_pred ccC-----CCCCCHHHHHHHHHHHHHhcCC--EEEEeeEEEEeeec----CCCcEEEEE---CCCCEEEeC-----EEEE
Confidence 111 1123455666666666666643 22334445544432 111122221 223456788 9999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||| +.|..|++||... +.++ +..... ..+.+ ..
T Consensus 112 ATG--s~p~~p~i~G~~~--~~~~-------------~v~~~~-----------------------------~~~~~-~~ 144 (304)
T 4fk1_A 112 ATG--MQEEFPSIPNVRE--YYGK-------------SLFSCP-----------------------------YCDGW-EL 144 (304)
T ss_dssp CCC--CEEECCSCTTHHH--HBTT-------------TEESCH-----------------------------HHHSG-GG
T ss_pred ccC--CccccccccCccc--cccc-------------eeeecc-----------------------------ccchh-Hh
Confidence 999 8899999988432 2111 000000 00111 12
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc------CCCCeEEcCCceEEcCC-----
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR------FPNNVVKKPDIAELTPT----- 315 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~------~~~~i~~~~~v~~~~~~----- 315 (1129)
+.++++|| .|||..++|+|..+...+++|+++.+.+.+.... ....+. ...++++.++
T Consensus 145 ~~~~~~VI----------ggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~~~~~~~l~~~g~~~~-~~~v~~~~~~~~~~~ 213 (304)
T 4fk1_A 145 KDQPLIII----------SENEDHTLHMTKLVYNWSTDLVIATNGNELSQTIMDELSNKNIPVI-TESIRTLQGEGGYLK 213 (304)
T ss_dssp TTSCEEEE----------CCSHHHHHHHHHHHTTTCSCEEEECSSCCCCHHHHHHHHTTTCCEE-CSCEEEEESGGGCCC
T ss_pred cCCceeee----------cCCCchhhhHHHHHHhCCceEEEEeccccchhhhhhhhhccceeEe-eeeEEEeecCCCeee
Confidence 24555553 3444567899999999999999999887653321 111233 3346666543
Q ss_pred ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc---ccccccceeee
Q psy12350 316 GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP---FLHESCGIKVV 392 (1129)
Q Consensus 316 ~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~---~~~~~~~~~~~ 392 (1129)
.|.+.||+++++|.+|+++|..++..++. ..++.++++..+....++ -++.|++|.+|.....+ ...+..|++.+
T Consensus 214 ~v~~~~g~~i~~~~~vi~~g~~~~~~~~~-~~g~~~~~~G~I~vd~~~-~Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~A 291 (304)
T 4fk1_A 214 KVEFHSGLRIERAGGFIVPTFFRPNQFIE-QLGCELQSNGTFVIDDFG-RTSEKNIYLAGETTTQGPSSLIIAASQGNKA 291 (304)
T ss_dssp EEEETTSCEECCCEEEECCEEECSSCHHH-HTTCCCCTTSSSCSSTTC-BCSSTTEEECSHHHHTSCCCHHHHHHHHHHH
T ss_pred eeeccccceeeecceeeeeccccCChhhh-hcCeEECCCCCEEECcCC-ccCCCCEEEEeccCCCcchHHHHHHHHHHHH
Confidence 37889999999999999999888877765 456777665433332222 36789999999875322 22233566665
Q ss_pred hhhccc
Q psy12350 393 NKNVQP 398 (1129)
Q Consensus 393 a~~~~~ 398 (1129)
|..+..
T Consensus 292 A~~i~~ 297 (304)
T 4fk1_A 292 AIAINS 297 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.3e-22 Score=237.29 Aligned_cols=297 Identities=13% Similarity=0.140 Sum_probs=168.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccC-----cccccccccCCcccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHS-----SMYKSLKTNLPKEIM 82 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~-----~~y~~l~~~~~~~~~ 82 (1129)
..+||+||||||||++||..|++ .|++|+||||++.+||+|.+ .+|. |.+. ..+..+...
T Consensus 24 ~~~dVvVIGgG~aGl~aA~~la~--~G~~V~liEk~~~~GG~~~~---~gci----P~k~l~~~~~~~~~~~~~------ 88 (491)
T 3urh_A 24 MAYDLIVIGSGPGGYVCAIKAAQ--LGMKVAVVEKRSTYGGTCLN---VGCI----PSKALLHASEMFHQAQHG------ 88 (491)
T ss_dssp --CCEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSHHHHH---HSHH----HHHHHHHHHHHHHHHHHS------
T ss_pred ccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCcccc---ccch----hhHHHHHHHHHHHHHHhh------
Confidence 35799999999999999999999 66999999999999999985 2221 1110 011111100
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHH-----------HHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCcc
Q psy12350 83 ELSGYHHKGHPDKSYIAANDVLEYLNDF-----------ADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTV 151 (1129)
Q Consensus 83 ~~~d~~~~~~~~~~~~~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 151 (1129)
+..|.++. .........+.++.+.+ .++.++ .+..++.+ . .+.+.+.+.+ ..+..
T Consensus 89 -~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g~~~-~-------~~~~~~~v~~-~~g~~ 154 (491)
T 3urh_A 89 -LEALGVEV--ANPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKI--DGFQGTGK-V-------LGQGKVSVTN-EKGEE 154 (491)
T ss_dssp -SGGGTEEC--CCCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESEEE-E-------CSSSEEEEEC-TTSCE
T ss_pred -HhhcCccc--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEE-E-------ecCCEEEEEe-CCCce
Confidence 11111110 01112334444443322 223333 33333222 1 1334455543 22333
Q ss_pred ceEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhc
Q psy12350 152 GFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKI 231 (1129)
Q Consensus 152 ~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 231 (1129)
....|| +|||||| +.| |.+||... .+.+ ...++...
T Consensus 155 ~~~~~d-----~lViATG--s~p--~~ipg~~~-~~~~-------------~~~~~~~~--------------------- 190 (491)
T 3urh_A 155 QVLEAK-----NVVIATG--SDV--AGIPGVEV-AFDE-------------KTIVSSTG--------------------- 190 (491)
T ss_dssp EEEECS-----EEEECCC--EEC--CCBTTBCC-CCCS-------------SSEECHHH---------------------
T ss_pred EEEEeC-----EEEEccC--CCC--CCCCCccc-ccCC-------------eeEEehhH---------------------
Confidence 567889 9999999 444 33444210 0000 00000000
Q ss_pred ccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC----------
Q psy12350 232 YFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------- 301 (1129)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------- 301 (1129)
...+. ...++++ | ||||++|+|+|..|++.|.+|+++++.+.+++...++
T Consensus 191 --------~~~~~-~~~~~vv-------V----iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~ 250 (491)
T 3urh_A 191 --------ALALE-KVPASMI-------V----VGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRMLT 250 (491)
T ss_dssp --------HTSCS-SCCSEEE-------E----ECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSSSCHHHHHHHHHHHH
T ss_pred --------hhhhh-hcCCeEE-------E----ECCCHHHHHHHHHHHHcCCEEEEEeccccccccCCHHHHHHHHHHHH
Confidence 00010 0123333 3 8999999999999999999999999998876533221
Q ss_pred ----CeEEcCCceEEcCC--c--eEEcC---C--CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCC
Q psy12350 302 ----NVVKKPDIAELTPT--G--VRFQD---G--SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIE 367 (1129)
Q Consensus 302 ----~i~~~~~v~~~~~~--~--v~~~d---g--~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~ 367 (1129)
++..+..|++++++ + +.+++ | +++++|.||+|||++++.++|. +..++..+++..+....++ .++
T Consensus 251 ~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~ 329 (491)
T 3urh_A 251 KQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHF-QTS 329 (491)
T ss_dssp HTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTC-BCS
T ss_pred hCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCC-CCC
Confidence 34455667777643 2 56653 5 4689999999999999998852 2234555554433333332 257
Q ss_pred CCCeEEecccccccc--cccccceeeehhhccc
Q psy12350 368 HPSMCIIGYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 368 ~p~l~~~G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
.|++|++|.....|. .....|++.+|.++.+
T Consensus 330 ~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 362 (491)
T 3urh_A 330 IAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAG 362 (491)
T ss_dssp STTEEECGGGSSSCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEecCCCccchhHHHHHHHHHHHHHcC
Confidence 899999998763322 1223777777776654
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-21 Score=230.92 Aligned_cols=290 Identities=20% Similarity=0.212 Sum_probs=170.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+||||||||++||..|++ .+++|+|+|+++ +||+|.+ .+|. |.+...+.. .....+..+..|.
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~--~g~~V~lie~~~-~GG~~~~---~g~i----P~k~l~~~~---~~~~~~~~~~~~g 72 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQ--LGLKVLAVEAGE-VGGVCLN---VGCI----PTKALLHAA---ETLHHLKVAEGFG 72 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC-TTHHHHH---TSHH----HHHHHHHHH---HHHHHHHHHGGGT
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCC-CCCCCCC---cChH----HHHHHHHHH---HHHHHHHhHHhcC
Confidence 5899999999999999999999 568999999977 9999974 2221 111111000 0000000111111
Q ss_pred CCCCCCCCCCCHHHHHHH-----------HHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 89 HKGHPDKSYIAANDVLEY-----------LNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
++. ...++...+..+ +..+.++.++ .++.++.+. ++ .+.+.+. .....||
T Consensus 73 ~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~~-~~-------~~~v~v~------g~~~~~d 133 (464)
T 2eq6_A 73 LKA---KPELDLKKLGGWRDQVVKKLTGGVGTLLKGNGV--ELLRGFARL-VG-------PKEVEVG------GERYGAK 133 (464)
T ss_dssp EEC---CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESCEEE-EE-------TTEEEET------TEEEEEE
T ss_pred CCC---CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEeeeEEE-cc-------CCEEEEc------cEEEEeC
Confidence 110 011123333322 2334444555 566665442 22 2333332 2356789
Q ss_pred ceeeeEEEEecccCCCCCccc-cccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPSKAE-MLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~~p~-i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
+||+||| +.|..|+ +|+.. .+ ..+..
T Consensus 134 -----~lViATG--s~p~~p~gi~~~~--~v-----------------~~~~~--------------------------- 160 (464)
T 2eq6_A 134 -----SLILATG--SEPLELKGFPFGE--DV-----------------WDSTR--------------------------- 160 (464)
T ss_dssp -----EEEECCC--EEECCBTTBCCSS--SE-----------------ECHHH---------------------------
T ss_pred -----EEEEcCC--CCCCCCCCCCCCC--cE-----------------EcHHH---------------------------
Confidence 9999999 7788775 54310 00 00000
Q ss_pred cccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CC
Q psy12350 237 ARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NN 302 (1129)
Q Consensus 237 ~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~ 302 (1129)
...+.....++++ | ||||++|+|+|..|++.|.+|+++++.+.+++...+ -+
T Consensus 161 ---~~~l~~~~~~~vv-------V----iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~ 226 (464)
T 2eq6_A 161 ---ALKVEEGLPKRLL-------V----IGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIR 226 (464)
T ss_dssp ---HTCGGGCCCSEEE-------E----ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCE
T ss_pred ---HHhhhhhcCCEEE-------E----ECCCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCE
Confidence 0001100123333 3 899999999999999999999999999877653221 13
Q ss_pred eEEcCCceEEcCC--c--eEEc-C--CC--EeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeE
Q psy12350 303 VVKKPDIAELTPT--G--VRFQ-D--GS--YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMC 372 (1129)
Q Consensus 303 i~~~~~v~~~~~~--~--v~~~-d--g~--~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~ 372 (1129)
+..+..|++++++ + |.++ + |+ ++++|.||+|+|++++.+++. +..++.++++..+....+ +.+++|++|
T Consensus 227 i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~Iy 305 (464)
T 2eq6_A 227 VRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNAR-METSVPGVY 305 (464)
T ss_dssp EECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTT-CBCSSTTEE
T ss_pred EEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCC-cccCCCCEE
Confidence 4556678888643 2 5665 7 87 789999999999999998752 233455544433333222 225789999
Q ss_pred Eecccccccc--cccccceeeehhhccc
Q psy12350 373 IIGYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 373 ~~G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
++|.....|. .....||+.+|.++.+
T Consensus 306 a~GD~~~~~~l~~~A~~~g~~aa~~i~g 333 (464)
T 2eq6_A 306 AIGDAARPPLLAHKAMREGLIAAENAAG 333 (464)
T ss_dssp ECGGGTCSSCCHHHHHHHHHHHHHHHTT
T ss_pred EEeccCCCcccHHHHHHHHHHHHHHhcC
Confidence 9998854321 1123677777777764
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-20 Score=223.70 Aligned_cols=284 Identities=11% Similarity=0.147 Sum_probs=185.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+||||||||++||.+|++ .|++|+|+|+ .+||.|..... +..+..+
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~--~G~~v~lie~--~~GG~~~~~~~-------------------------~~~~~~~ 261 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSAR--KGIRTGLMGE--RFGGQVLDTVD-------------------------IENYISV 261 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECS--STTGGGTTCSC-------------------------BCCBTTB
T ss_pred CcccEEEECCcHHHHHHHHHHHh--CCCeEEEEEC--CCCCccccccc-------------------------ccccCCC
Confidence 35799999999999999999999 5699999987 57999873110 0011111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
.+....++.++++.+++++++ .++++++|+.++........|.+.. .. .....|| +||+|
T Consensus 262 --------~~~~~~~l~~~l~~~~~~~gv--~v~~~~~v~~i~~~~~~~~~~~V~~---~~--g~~~~~d-----~vVlA 321 (521)
T 1hyu_A 262 --------PKTEGQKLAGALKAHVSDYDV--DVIDSQSASKLVPAATEGGLHQIET---AS--GAVLKAR-----SIIIA 321 (521)
T ss_dssp --------SSBCHHHHHHHHHHHHHTSCE--EEECSCCEEEEECCSSTTSCEEEEE---TT--SCEEEEE-----EEEEC
T ss_pred --------CCCCHHHHHHHHHHHHHHcCC--EEEcCCEEEEEEeccCCCceEEEEE---CC--CCEEEcC-----EEEEC
Confidence 124567899999999998877 7899999998864211112344432 12 2356788 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| +.|..|++||... +.++ +.+... ..... .+.
T Consensus 322 tG--~~~~~~~ipG~~~--~~~~-------------~v~~~~----------------------------~~~~~--~~~ 354 (521)
T 1hyu_A 322 TG--AKWRNMNVPGEDQ--YRTK-------------GVTYCP----------------------------HCDGP--LFK 354 (521)
T ss_dssp CC--EEECCCCCTTTTT--TTTT-------------TEECCT----------------------------TCCGG--GGB
T ss_pred CC--CCcCCCCCCChhh--hcCc-------------eEEEee----------------------------cCchh--hcC
Confidence 99 5677777776321 1110 000000 00000 112
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc------CC-C--CeEEcCCceEEcCC---
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR------FP-N--NVVKKPDIAELTPT--- 315 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~------~~-~--~i~~~~~v~~~~~~--- 315 (1129)
+++++| ||||++|+|+|..|+..+.+|++++|.+.+.... .. . ++..+..++++.++
T Consensus 355 ~k~V~V-----------iGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~~~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~ 423 (521)
T 1hyu_A 355 GKRVAV-----------IGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRSLKNVDIILNAQTTEVKGDGSK 423 (521)
T ss_dssp TSEEEE-----------ECCSHHHHHHHHHHHHHBSEEEEECSSSSCCSCHHHHHHHTTCTTEEEECSEEEEEEEECSSS
T ss_pred CCeEEE-----------ECCCHHHHHHHHHHHhhCCEEEEEEeCcccCcCHHHHHHHhcCCCcEEEeCCEEEEEEcCCCc
Confidence 344444 7999999999999999999999999988764310 11 2 34445678888653
Q ss_pred --ceEEcC---CC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc---cccc
Q psy12350 316 --GVRFQD---GS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP---FLHE 385 (1129)
Q Consensus 316 --~v~~~d---g~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~---~~~~ 385 (1129)
+|.+.| |+ ++++|.||+|+|++++.+++... +..++++.+....++ .++.|++|++|.....| ...+
T Consensus 424 v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~--l~~~~~G~I~Vd~~~-~ts~p~VfA~GD~~~~~~~~~~~A 500 (521)
T 1hyu_A 424 VVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGA--LERNRMGEIIIDAKC-ETSVKGVFAAGDCTTVPYKQIIIA 500 (521)
T ss_dssp EEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTTT--SCBCTTSCBCCCTTC-BCSSTTEEECSTTBCCSSCCHHHH
T ss_pred EEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhhh--hccCCCCcEEeCCCC-CCCCCCEEEeecccCCCcceeeeh
Confidence 366764 54 57999999999999999998742 444444333222222 25789999999886543 2333
Q ss_pred ccceeeehhhcccccc
Q psy12350 386 SCGIKVVNKNVQPLYK 401 (1129)
Q Consensus 386 ~~~~~~~a~~~~~~~~ 401 (1129)
..|++.+|.++...+.
T Consensus 501 ~~~g~~aa~~i~~~L~ 516 (521)
T 1hyu_A 501 TGEGAKASLSAFDYLI 516 (521)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 4777777777765543
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=9.1e-21 Score=225.65 Aligned_cols=295 Identities=14% Similarity=0.151 Sum_probs=176.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCc-----ccccccccCCcccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSS-----MYKSLKTNLPKEIM 82 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~-----~y~~l~~~~~~~~~ 82 (1129)
..+||+||||||||++||..|++ .|++|+|+|+++.+||+|.+ .+|. |.+.. .+..+...
T Consensus 5 ~~~dvvIIGaG~aGl~aA~~l~~--~g~~V~liE~~~~~GG~~~~---~g~~----p~k~l~~~~~~~~~~~~~------ 69 (470)
T 1dxl_A 5 DENDVVIIGGGPGGYVAAIKAAQ--LGFKTTCIEKRGALGGTCLN---VGCI----PSKALLHSSHMYHEAKHS------ 69 (470)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSSSCCSHHH---HSHH----HHHHHHHHHHHHHHHHHT------
T ss_pred ccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCccccccC---cCcc----chHHHHHHHHHHHHHHHH------
Confidence 35899999999999999999999 56899999999899999974 1221 10000 00100000
Q ss_pred ccCCCCCCCCCCCCCCCHHH-----------HHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCcc
Q psy12350 83 ELSGYHHKGHPDKSYIAAND-----------VLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTV 151 (1129)
Q Consensus 83 ~~~d~~~~~~~~~~~~~~~~-----------~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 151 (1129)
+..+.++. ......... +.+++..++++.++ .+++++.+. ++. ..+.+.. .++..
T Consensus 70 -~~~~g~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~~-~~~-------~~~~v~~-~~G~~ 135 (470)
T 1dxl_A 70 -FANHGVKV--SNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKV--TYVKGYGKF-VSP-------SEISVDT-IEGEN 135 (470)
T ss_dssp -HHHHTEEE--SCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEESCEEE-EET-------TEEEECC-SSSCC
T ss_pred -HHhcCccc--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeEEEE-ecC-------CEEEEEe-CCCce
Confidence 00000000 000011122 22334555566665 677777553 332 2233322 12222
Q ss_pred ceEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhc
Q psy12350 152 GFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKI 231 (1129)
Q Consensus 152 ~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 231 (1129)
....|| +||+||| +.|..|+++|.... +..+..
T Consensus 136 ~~i~~d-----~lIiAtG--s~p~~p~~~g~~~~------------------~v~~~~---------------------- 168 (470)
T 1dxl_A 136 TVVKGK-----HIIIATG--SDVKSLPGVTIDEK------------------KIVSST---------------------- 168 (470)
T ss_dssp EEEECS-----EEEECCC--EEECCBTTBCCCSS------------------SEECHH----------------------
T ss_pred EEEEcC-----EEEECCC--CCCCCCCCCCCCcc------------------cEEeHH----------------------
Confidence 457788 9999999 77888877652110 000000
Q ss_pred ccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC-----------
Q psy12350 232 YFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP----------- 300 (1129)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~----------- 300 (1129)
....+. .. +++++| ||||++|+|+|..|++.|.+|+++++.+.+++...+
T Consensus 169 -------~~~~~~--~~------~~~vvV----iGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~ 229 (470)
T 1dxl_A 169 -------GALALS--EI------PKKLVV----IGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLE 229 (470)
T ss_dssp -------HHTTCS--SC------CSEEEE----SCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHH
T ss_pred -------Hhhhhh--hc------CCeEEE----ECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccccHHHHHHHHHHHH
Confidence 000010 01 233333 899999999999999999999999999887653221
Q ss_pred ---CCeEEcCCceEEcCCc----eEEc---CC--CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCC
Q psy12350 301 ---NNVVKKPDIAELTPTG----VRFQ---DG--SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIE 367 (1129)
Q Consensus 301 ---~~i~~~~~v~~~~~~~----v~~~---dg--~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~ 367 (1129)
-++..+..|+++++++ +.++ +| +++++|.||+|+|++++.++|. +..++.++++..+....++ .++
T Consensus 230 ~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~-~t~ 308 (470)
T 1dxl_A 230 KQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERF-STN 308 (470)
T ss_dssp HSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTC-BCS
T ss_pred HcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCC-ccC
Confidence 1556677788887542 4554 55 5789999999999999998842 3456766654433333332 267
Q ss_pred CCCeEEecccccccc--cccccceeeehhhccc
Q psy12350 368 HPSMCIIGYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 368 ~p~l~~~G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
+|++|++|.....|. .....|++.+|.++.+
T Consensus 309 ~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g 341 (470)
T 1dxl_A 309 VSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAG 341 (470)
T ss_dssp STTEEECSTTSSSCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeccCCCCccHHHHHHHHHHHHHHHcC
Confidence 899999998754321 1123777777777764
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-21 Score=240.18 Aligned_cols=309 Identities=16% Similarity=0.142 Sum_probs=175.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc-C-------CcCceEecCCCCCCCCCCCCccCcccccccccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT-D-------NVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPK 79 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~-~-------~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~ 79 (1129)
..+||+|||||||||+||.+|++ .|++|+|||+. + .+||+|.+ .+|. |.+ .++... .+..
T Consensus 106 ~~~dvvVIG~GpAGl~aA~~l~~--~g~~v~liE~~~~~~~g~~~~~GG~~~~---~g~i----P~~-~l~~~~--~~~~ 173 (598)
T 2x8g_A 106 YDYDLIVIGGGSGGLAAGKEAAK--YGAKTAVLDYVEPTPIGTTWGLGGTCVN---VGCI----PKK-LMHQAG--LLSH 173 (598)
T ss_dssp SSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTCCCCCTTHHHHH---HSHH----HHH-HHHHHH--HHHH
T ss_pred ccccEEEECCCccHHHHHHHHHh--CCCeEEEEeccCCcccccccccCceEec---cCCC----chH-HHHHHH--HHHH
Confidence 35899999999999999999999 56999999973 2 48998874 1210 100 010000 0000
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEec-eeeeeeccccccCCCCceEEeccccCccceEEecc
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVN-KNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDL 158 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~-~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 158 (1129)
.......|.+.........+..++.+|++.+++++.....+.+. ..|+.+.......+.|.+.+.+ .+++.....||
T Consensus 174 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~-~~g~~~~~~~d- 251 (598)
T 2x8g_A 174 ALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITD-KNQKVSTITGN- 251 (598)
T ss_dssp HHHHHHHTTCCCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEEC-TTCCEEEEEEE-
T ss_pred HHhhHHhCCccccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEe-CCCCeEEEEeC-
Confidence 01111111111000001346678888888777654211111111 1222222111112345555543 22222456799
Q ss_pred eeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccc
Q psy12350 159 QVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFAR 238 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 238 (1129)
+|||||| +.|..|++||.....+ .+... + .
T Consensus 252 ----~lviAtG--s~p~~p~i~G~~~~~~------------------~~~~~----------------------~----~ 281 (598)
T 2x8g_A 252 ----KIILATG--ERPKYPEIPGAVEYGI------------------TSDDL----------------------F----S 281 (598)
T ss_dssp ----EEEECCC--EEECCCSSTTHHHHCE------------------EHHHH----------------------T----T
T ss_pred ----EEEEeCC--CCCCCCCCCCcccceE------------------cHHHH----------------------h----h
Confidence 9999999 7899998887321100 00000 0 0
Q ss_pred cccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCeE
Q psy12350 239 CSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNVV 304 (1129)
Q Consensus 239 ~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i~ 304 (1129)
+. ...++++| ||||++|+|+|..|++.|.+||+++|. .+++...+ -++.
T Consensus 282 ----~~-~~~~~vvV-----------iGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~gv~i~ 344 (598)
T 2x8g_A 282 ----LP-YFPGKTLV-----------IGASYVALECAGFLASLGGDVTVMVRS-ILLRGFDQQMAEKVGDYMENHGVKFA 344 (598)
T ss_dssp ----CS-SCCCSEEE-----------ECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred ----Cc-cCCCEEEE-----------ECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCcCCHHHHHHHHHHHHhCCCEEE
Confidence 00 11234444 799999999999999999999999997 44332211 1344
Q ss_pred EcCCceEE--------cC---Cce--E--EcCCCEee--cCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccC
Q psy12350 305 KKPDIAEL--------TP---TGV--R--FQDGSYEQ--VDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINI 366 (1129)
Q Consensus 305 ~~~~v~~~--------~~---~~v--~--~~dg~~~~--~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~ 366 (1129)
....++++ ++ +.+ . +.+|++++ +|.||+|+|++++.++|. +..++.++++..+....+ +.+
T Consensus 345 ~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~-~~t 423 (598)
T 2x8g_A 345 KLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDD-EQT 423 (598)
T ss_dssp ETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCTT-SBC
T ss_pred ECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCCC-CcC
Confidence 44444454 22 223 2 35887664 999999999999998853 344566655443333333 236
Q ss_pred CCCCeEEeccccc--ccc-cccccceeeehhhccc
Q psy12350 367 EHPSMCIIGYTYR--YPF-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 367 ~~p~l~~~G~~~~--~~~-~~~~~~~~~~a~~~~~ 398 (1129)
+.|++|++|.... ..+ ..+..||+.+|.++.+
T Consensus 424 s~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 458 (598)
T 2x8g_A 424 TVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFA 458 (598)
T ss_dssp SSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhc
Confidence 7899999998832 111 1223788888887764
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.3e-21 Score=226.13 Aligned_cols=299 Identities=13% Similarity=0.142 Sum_probs=173.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccc-cCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIME-LSGY 87 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~-~~d~ 87 (1129)
.+||+|||||+||++||..|++ .|++|+|+|+++.+||+|.+ .+|. |.+...+.. .....+.. +..+
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~~~~GG~~~~---~g~~----psk~l~~~~---~~~~~~~~~~~~~ 69 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQ--LGMKTACVEKRGALGGTCLN---VGCI----PSKALLHAT---HLYHDAHANFARY 69 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSHHHHH---HSHH----HHHHHHHHH---HHHHHHHHTHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcCCcCCC---cCcH----hHHHHHHHH---HHHHHHHHHHHhc
Confidence 3799999999999999999999 56899999999899999984 1221 111000000 00000000 0001
Q ss_pred CCCCCCCCCCCCHHHHHH-----------HHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEe
Q psy12350 88 HHKGHPDKSYIAANDVLE-----------YLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLF 156 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~-----------yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1129)
.++.. .....+..++.. .+..+.++.++ .++.++.+. ++. +.+.+.. .++......|
T Consensus 70 g~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v--~~~~g~~~~-i~~-------~~~~v~~-~~G~~~~~~~ 137 (468)
T 2qae_A 70 GLMGG-EGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKV--TYYKGEGSF-ETA-------HSIRVNG-LDGKQEMLET 137 (468)
T ss_dssp TEECG-GGCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEEE-EET-------TEEEEEE-TTSCEEEEEE
T ss_pred CcccC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEEE-eeC-------CEEEEEe-cCCceEEEEc
Confidence 00000 000112233322 23445555555 666666442 332 3334432 1222245789
Q ss_pred cceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 157 DLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 157 d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
| +||+||| +.|..|+++|.... +..+..
T Consensus 138 d-----~lviAtG--~~p~~p~~~g~~~~------------------~v~t~~--------------------------- 165 (468)
T 2qae_A 138 K-----KTIIATG--SEPTELPFLPFDEK------------------VVLSST--------------------------- 165 (468)
T ss_dssp E-----EEEECCC--EEECCBTTBCCCSS------------------SEECHH---------------------------
T ss_pred C-----EEEECCC--CCcCCCCCCCCCcC------------------ceechH---------------------------
Confidence 9 9999999 78888877652100 000000
Q ss_pred cccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccC---------------CC
Q psy12350 237 ARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRF---------------PN 301 (1129)
Q Consensus 237 ~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~---------------~~ 301 (1129)
....+. ...++++ | ||||++|+|+|..|++.|.+|+++++.+.+++... .-
T Consensus 166 --~~~~~~-~~~~~vv-------V----iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv 231 (468)
T 2qae_A 166 --GALALP-RVPKTMV-------V----IGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKM 231 (468)
T ss_dssp --HHHTCS-SCCSEEE-------E----ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCC
T ss_pred --HHhhcc-cCCceEE-------E----ECCCHHHHHHHHHHHHhCCEEEEEecCCcccccCCHHHHHHHHHHHhhcCCc
Confidence 000010 0123333 3 89999999999999999999999999987765211 11
Q ss_pred CeEEcCCceEEcCC--c--eEEc--CC--CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeE
Q psy12350 302 NVVKKPDIAELTPT--G--VRFQ--DG--SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMC 372 (1129)
Q Consensus 302 ~i~~~~~v~~~~~~--~--v~~~--dg--~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~ 372 (1129)
++..+..|++++++ + +.++ || +++++|.||+|+|++++.++|. +..++.++++..+....++ -+++|++|
T Consensus 232 ~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~-~t~~~~Iy 310 (468)
T 2qae_A 232 KFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHF-ETSIPDVY 310 (468)
T ss_dssp EEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTS-BCSSTTEE
T ss_pred EEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCc-ccCCCCEE
Confidence 34556778888643 2 4555 67 5789999999999999998853 2344555544333322222 25789999
Q ss_pred Eeccccc-cc-c-cccccceeeehhhccc
Q psy12350 373 IIGYTYR-YP-F-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 373 ~~G~~~~-~~-~-~~~~~~~~~~a~~~~~ 398 (1129)
++|.... .| + .....||+.+|.++.+
T Consensus 311 A~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 339 (468)
T 2qae_A 311 AIGDVVDKGPMLAHKAEDEGVACAEILAG 339 (468)
T ss_dssp ECGGGBSSSCSCHHHHHHHHHHHHHHHTT
T ss_pred EeeccCCCCCccHhHHHHHHHHHHHHHcC
Confidence 9998765 32 2 1223777777777654
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-21 Score=213.61 Aligned_cols=266 Identities=11% Similarity=0.048 Sum_probs=174.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC-CCCCCCCCCCCccccccCccccccc---------c
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT-EHIGCDQYGLPVHSSMYKSLKTNLP---------K 809 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~-~~~g~~~~g~p~~~~~y~~~~~~~~---------~ 809 (1129)
.+++|||+|++|+++|..|.+.| ++|+|||+++..++.+... .+++.. ..+ ...+...+..... .
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~v~~~~~ 77 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRAR--KNILLVDAGERRNRFASHSHGFLGQD--GKA-PGEIIAEARRQIERYPTIHWVEG 77 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEECCCCGGGGCSCCCSSTTCT--TCC-HHHHHHHHHHHHTTCTTEEEEES
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCcccccchhhcCCcCCC--CCC-HHHHHHHHHHHHHhcCCeEEEEe
Confidence 46899999999999999999999 9999999977555544221 122210 000 0000000000000 0
Q ss_pred cccccc--C--CCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHH
Q psy12350 810 DLMELC--G--YGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDIT 885 (1129)
Q Consensus 810 ~~~~~~--~--~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA 885 (1129)
...... + +.........+.....++.+|+.|+.|++||++.|.+..+|++.+.+...+++|+|+|||+|.+|+|+|
T Consensus 78 ~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a 157 (297)
T 3fbs_A 78 RVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHA 157 (297)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHH
T ss_pred EEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcccCcchhhcCCEEEEEecCccHHHHH
Confidence 000000 0 000000011122223344499999999999998887777787777666677899999999999999999
Q ss_pred HHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcC-CeeEEeCC-cEEecCCcEeeccEE
Q psy12350 886 LDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKP-DVAELTPT-GVRFQDGSYEQVDII 963 (1129)
Q Consensus 886 ~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~i~~v~~~-~V~~~dG~~~~~D~V 963 (1129)
..|++.+ +|+++.+.... +...+. +.+. ..+|++.. .|++++++ .|++.||+++++|.|
T Consensus 158 ~~l~~~g-~v~~v~~~~~~--~~~~~~-------------~~l~---~~gv~i~~~~v~~i~~~~~v~~~~g~~~~~D~v 218 (297)
T 3fbs_A 158 LMLPDWG-ETTFFTNGIVE--PDADQH-------------ALLA---ARGVRVETTRIREIAGHADVVLADGRSIALAGL 218 (297)
T ss_dssp HHGGGTS-EEEEECTTTCC--CCHHHH-------------HHHH---HTTCEEECSCEEEEETTEEEEETTSCEEEESEE
T ss_pred HHhhhcC-cEEEEECCCCC--CCHHHH-------------HHHH---HCCcEEEcceeeeeecCCeEEeCCCCEEEEEEE
Confidence 9999998 99999875431 111000 0111 12566654 38888877 799999999999999
Q ss_pred EEccCccCcCCCCCCCCCeeecCC--c-ccccccceeecCCCCcEEEccccc-cchhHHHHHHHHHHHHHHc
Q psy12350 964 LCCTGYSNHYPFLHESCGIKVVNK--N-VQPLYKHTINIEHPTMFILGVPRH-TLLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 964 I~aTG~~~~~~fl~~~~g~~~~~~--~-~~~ly~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~~a~~l~ 1031 (1129)
|+|||++|+.+++.. ++++++.. + ...+..+ +.++.||||++|++.. ......+..||+.+|..+.
T Consensus 219 i~a~G~~p~~~~~~~-~g~~~~~~~~G~~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 288 (297)
T 3fbs_A 219 FTQPKLRITVDWIEK-LGCAVEEGPMGSTIVTDPM-KQTTARGIFACGDVARPAGSVALAVGDGAMAGAAAH 288 (297)
T ss_dssp EECCEEECCCSCHHH-HTCCEEEETTEEEECCCTT-CBCSSTTEEECSGGGCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEccCcccCchhHHh-cCCccccCCCCceEEeCCC-CccCCCCEEEEeecCCchHHHHHHHHhHHHHHHHHH
Confidence 999999999887654 56665532 2 2233333 4578999999999987 4567888889998887764
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.7e-21 Score=224.60 Aligned_cols=295 Identities=16% Similarity=0.164 Sum_probs=174.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+||||||||++||.+|++ .|++|+|+|++ .+||+|.+ .+|. |.+ .+.... .....+..+..+.
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~-~~gG~~~~---~g~~----p~k-~l~~~~--~~~~~~~~~~~~g 69 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQ--LGQKVTIVEKG-NLGGVCLN---VGCI----PSK-ALISAS--HRYEQAKHSEEMG 69 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CTTHHHHH---TSHH----HHH-HHHHHH--HHHHHHHTCGGGT
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEECC-CCCCcCcC---cCch----hhH-HHHHHH--HHHHHHHHHHhcC
Confidence 4789999999999999999999 56899999997 89999974 1221 100 000000 0000000011111
Q ss_pred CCCCCCCCCCCHHH-----------HHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 89 HKGHPDKSYIAAND-----------VLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~-----------~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
++. .....+... +.+++.+++++.++ .++.++.+. ++. ..+.+... ++ .....||
T Consensus 70 ~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~~-id~-------~~v~V~~~-~G-~~~i~~d 135 (455)
T 1ebd_A 70 IKA--ENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKV--EIVKGEAYF-VDA-------NTVRVVNG-DS-AQTYTFK 135 (455)
T ss_dssp EEC--CSCEECHHHHHHHHHHHHHHHHHHHHHHHHTTTC--EEEESEEEE-EET-------TEEEEEET-TE-EEEEECS
T ss_pred ccc--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEEE-ccC-------CeEEEEeC-CC-cEEEEeC
Confidence 100 000011222 33444556666665 677777553 332 23333321 11 1456789
Q ss_pred ceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFA 237 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 237 (1129)
+||+||| +.|..|+++|.... + ..+...
T Consensus 136 -----~lViATG--s~p~~~~~~g~~~~-v-----------------~~~~~~--------------------------- 163 (455)
T 1ebd_A 136 -----NAIIATG--SRPIELPNFKFSNR-I-----------------LDSTGA--------------------------- 163 (455)
T ss_dssp -----EEEECCC--EEECCBTTBCCCSS-E-----------------ECHHHH---------------------------
T ss_pred -----EEEEecC--CCCCCCCCCCccce-E-----------------ecHHHH---------------------------
Confidence 9999999 77888877652100 0 000000
Q ss_pred ccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCe
Q psy12350 238 RCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNV 303 (1129)
Q Consensus 238 ~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i 303 (1129)
. .+. ...++++ | ||||++|+|+|..|++.|.+|+++++.+.+++...+ -++
T Consensus 164 ~---~~~-~~~~~vv-------V----iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i 228 (455)
T 1ebd_A 164 L---NLG-EVPKSLV-------V----IGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEV 228 (455)
T ss_dssp H---TCS-SCCSEEE-------E----ECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred h---ccc-cCCCeEE-------E----ECCCHHHHHHHHHHHHcCCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEE
Confidence 0 010 0123333 3 899999999999999999999999998877653221 145
Q ss_pred EEcCCceEEcCC--c--eEEc---CCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEec
Q psy12350 304 VKKPDIAELTPT--G--VRFQ---DGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIG 375 (1129)
Q Consensus 304 ~~~~~v~~~~~~--~--v~~~---dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G 375 (1129)
..+..|++++++ + +.++ +++++++|.||+|+|++++.++|. +..++.++++..+....++ .+++|++|++|
T Consensus 229 ~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~-~t~~~~Iya~G 307 (455)
T 1ebd_A 229 VTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQC-RTSVPNIFAIG 307 (455)
T ss_dssp EESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTC-BCSSTTEEECG
T ss_pred EeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCc-ccCCCCEEEEe
Confidence 566778888643 3 3444 456789999999999999999852 3456766654433333332 26789999999
Q ss_pred ccccccc--cccccceeeehhhccc
Q psy12350 376 YTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 376 ~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
.....|. .....|++.+|.++.+
T Consensus 308 D~~~~~~~~~~A~~~g~~aa~~i~~ 332 (455)
T 1ebd_A 308 DIVPGPALAHKASYEGKVAAEAIAG 332 (455)
T ss_dssp GGSSSCCCHHHHHHHHHHHHHHHTS
T ss_pred ccCCCcccHHHHHHHHHHHHHHHcC
Confidence 8854321 1223777777777763
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-21 Score=227.18 Aligned_cols=291 Identities=11% Similarity=0.105 Sum_probs=174.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCc-----ccccccccCCccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSS-----MYKSLKTNLPKEIME 83 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~-----~y~~l~~~~~~~~~~ 83 (1129)
.+||+||||||||++||..|++ .|++|+|+||+ .+||+|.+. +|. |.+.. .++.+.. .
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~--~G~~V~liE~~-~~gG~~~~~---g~~----psk~ll~~~~~~~~~~~-------~ 65 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQ--LGLSTAIVEPK-YWGGVCLNV---GCI----PSKALLRNAELVHIFTK-------D 65 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSS-CTTHHHHHH---SHH----HHHHHHHHHHHHHHHHH-------H
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCC-CCCCccccc---Cch----hhHHHHHHHHHHHHHHH-------H
Confidence 4799999999999999999999 56999999997 799999741 110 10000 0111100 0
Q ss_pred cCCCCCCCCCCCCCCCHHH-----------HHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccc
Q psy12350 84 LSGYHHKGHPDKSYIAAND-----------VLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVG 152 (1129)
Q Consensus 84 ~~d~~~~~~~~~~~~~~~~-----------~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (1129)
+..+.++. . ...+... +.+++.+++++.++ .+++++.+. ++ .+.+.+.. .++...
T Consensus 66 ~~~~g~~~--~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv--~~~~g~~~~-id-------~~~v~V~~-~~G~~~ 131 (464)
T 2a8x_A 66 AKAFGISG--E-VTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKI--TEIHGYGTF-AD-------ANTLLVDL-NDGGTE 131 (464)
T ss_dssp TTTTTEEE--C-CEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEECEEEEE-SS-------SSEEEEEE-TTSCCE
T ss_pred HHhcCCCC--C-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeEEEE-ec-------CCeEEEEe-CCCceE
Confidence 11111110 0 0111222 23344556666665 677777553 22 23344432 122224
Q ss_pred eEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcc
Q psy12350 153 FYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIY 232 (1129)
Q Consensus 153 ~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 232 (1129)
...|| +||+||| +.|..|+++|.... + ..+...
T Consensus 132 ~~~~d-----~lViAtG--~~~~~~~~~g~~~~-~-----------------~~~~~~---------------------- 164 (464)
T 2a8x_A 132 SVTFD-----NAIIATG--SSTRLVPGTSLSAN-V-----------------VTYEEQ---------------------- 164 (464)
T ss_dssp EEEEE-----EEEECCC--EEECCCTTCCCBTT-E-----------------ECHHHH----------------------
T ss_pred EEEcC-----EEEECCC--CCCCCCCCCCCCce-E-----------------EecHHH----------------------
Confidence 57789 9999999 67777776552100 0 000000
Q ss_pred cccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC-----------
Q psy12350 233 FESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN----------- 301 (1129)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~----------- 301 (1129)
. .+. ...++++ | ||||++|+|+|..|++.|.+||+++|.+.+++...++
T Consensus 165 -----~---~~~-~~~~~vv-------V----iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~ 224 (464)
T 2a8x_A 165 -----I---LSR-ELPKSII-------I----AGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKK 224 (464)
T ss_dssp -----H---TCS-SCCSEEE-------E----ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHH
T ss_pred -----h---hcc-ccCCeEE-------E----ECCcHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHH
Confidence 0 010 0123333 3 8999999999999999999999999998876632221
Q ss_pred ---CeEEcCCceEEcCC--c--eEEc-CC--CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCC
Q psy12350 302 ---NVVKKPDIAELTPT--G--VRFQ-DG--SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPS 370 (1129)
Q Consensus 302 ---~i~~~~~v~~~~~~--~--v~~~-dg--~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~ 370 (1129)
++..+..|++++++ + +.++ +| +++++|.||+|+|++++.++|. +..++.++++..+....++ -+++|+
T Consensus 225 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~-~t~~~~ 303 (464)
T 2a8x_A 225 LGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYM-RTNVGH 303 (464)
T ss_dssp HTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTS-BCSSTT
T ss_pred cCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCC-ccCCCC
Confidence 45567788888643 2 4454 67 5689999999999999998853 2344555544333332332 267899
Q ss_pred eEEecccccccc--cccccceeeehhhccc
Q psy12350 371 MCIIGYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 371 l~~~G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
+|++|.....|. .....|++.+|.++.+
T Consensus 304 IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 333 (464)
T 2a8x_A 304 IYAIGDVNGLLQLAHVAEAQGVVAAETIAG 333 (464)
T ss_dssp EEECGGGGCSSCSHHHHHHHHHHHHHHHHT
T ss_pred EEEeECcCCCccCHHHHHHHHHHHHHHhcC
Confidence 999998854321 1223777777777753
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.6e-21 Score=214.92 Aligned_cols=268 Identities=14% Similarity=0.141 Sum_probs=176.2
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccc-----cccCccccccc-----
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHS-----SMYKSLKTNLP----- 808 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~-----~~y~~~~~~~~----- 808 (1129)
..+++|||+|++|+++|..|.+.| ++|+|+|+++.+||.|.. .+|+...++.+... .+...+.....
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQ--ASVKIIESLPQLGGQLSA-LYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQT 83 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHH-HCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCE
T ss_pred cceEEEECCCHHHHHHHHHHHHCC--CCEEEEEcCCCCCceehh-cCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCc
Confidence 357899999999999999999999 999999999999999953 22222111111000 00000000000
Q ss_pred ----ccccccc---C--CCCCCCCCCCCCChhhhhhccC---CCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEc
Q psy12350 809 ----KDLMELC---G--YGHKGNADKSYIGAKDVLENYN---HPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVG 876 (1129)
Q Consensus 809 ----~~~~~~~---~--~~~~~~~~~~~~~~~~v~~~~~---~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG 876 (1129)
....... + +..... ...+.....++.+|+ .|+.|++||.+.|.+..+|+ .+.+...+++|+|+|||
T Consensus 84 ~~~~~~v~~i~~~~~~~~~v~~~-~g~~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~-~~~~~~~~~~~~v~vvG 161 (332)
T 3lzw_A 84 ICLEQAVESVEKQADGVFKLVTN-EETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY-FVDDLQKFAGRRVAILG 161 (332)
T ss_dssp EECSCCEEEEEECTTSCEEEEES-SEEEEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES-SCSCGGGGBTCEEEEEC
T ss_pred EEccCEEEEEEECCCCcEEEEEC-CCEEEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE-ecCCHHHcCCCEEEEEC
Confidence 0000000 0 000000 000111223334888 89999999999888888888 77777778899999999
Q ss_pred CCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc----E
Q psy12350 877 SGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG----V 950 (1129)
Q Consensus 877 ~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~----V 950 (1129)
+|.+|+|+|..|++.+.+|+++.+.+........+.. + ...+|++..+ +.+++.++ |
T Consensus 162 ~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~--------------l---~~~gv~~~~~~~v~~i~~~~~~~~v 224 (332)
T 3lzw_A 162 GGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVEN--------------L---HASKVNVLTPFVPAELIGEDKIEQL 224 (332)
T ss_dssp SSHHHHHHHHHHTTTBSEEEEECSSSSCSSCHHHHHH--------------H---HHSSCEEETTEEEEEEECSSSCCEE
T ss_pred CCHhHHHHHHHHHhhCCeEEEEEecCcCCccHHHHHH--------------H---hcCCeEEEeCceeeEEecCCceEEE
Confidence 9999999999999999999999887654333221111 0 0126777764 88887654 7
Q ss_pred EecC-----CcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccc----cchhHHHHH
Q psy12350 951 RFQD-----GSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH----TLLFNLFDL 1021 (1129)
Q Consensus 951 ~~~d-----G~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~----~~~~~~~e~ 1021 (1129)
.+.+ ++++++|.||+|+|++|+.+++.. +++.+++.++ .+.. .+.++.||||++|++.. ......+..
T Consensus 225 ~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~-~~~~~~~g~i-~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~~ 301 (332)
T 3lzw_A 225 VLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKN-WGLDIEKNSI-VVKS-TMETNIEGFFAAGDICTYEGKVNLIASGFG 301 (332)
T ss_dssp EEEETTSCCEEEEECSEEEECCCEECCCGGGGG-SSCCEETTEE-ECCT-TSBCSSTTEEECGGGEECTTCCCCHHHHHH
T ss_pred EEEecCCCceEEEECCEEEEeeccCCCchHHhh-cCccccCCeE-EeCC-CCceecCCEEEccceecCCCCcceEeeehh
Confidence 7776 456899999999999999888765 6666643333 3333 23458999999999863 234677777
Q ss_pred HHHHHHHHHc
Q psy12350 1022 QVRLFQQLMQ 1031 (1129)
Q Consensus 1022 qa~~~a~~l~ 1031 (1129)
||+.+|..+.
T Consensus 302 ~g~~aa~~i~ 311 (332)
T 3lzw_A 302 EAPTAVNNAK 311 (332)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 8888777654
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-20 Score=223.65 Aligned_cols=293 Identities=15% Similarity=0.157 Sum_probs=174.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||+||||||||++||..|++ .|++|+|+|+++.+||+|.+ .+| .....++.... ....+.. ..|.+
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~--~g~~V~lie~~~~~GG~~~~---~g~-----~p~k~l~~~~~--~~~~~~~-~~~g~ 68 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQ--LGMKVGVVEKEKALGGTCLR---VGC-----IPSKALLETTE--RIYEAKK-GLLGA 68 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSHHHHH---HSH-----HHHHHHHHHHH--HHHHHHH-CCTTE
T ss_pred CCEEEECCChhHHHHHHHHHH--CCCeEEEEeCCCCCCCccce---ecc-----hhHHHHHHHHH--HHHHHhh-hcCCc
Confidence 699999999999999999999 56899999999899999984 122 11101110000 0000000 11111
Q ss_pred CCCCCCCCCCHHHHHHH-----------HHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecc
Q psy12350 90 KGHPDKSYIAANDVLEY-----------LNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDL 158 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 158 (1129)
+. .....+..++..+ +..+.++.++ .++.++.+. + +.+.+.+.+ + .....||
T Consensus 69 ~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v--~~~~g~~~~-i-------~~~~~~v~~--~--g~~~~~d- 131 (455)
T 2yqu_A 69 KV--KGVELDLPALMAHKDKVVQANTQGVEFLFKKNGI--ARHQGTARF-L-------SERKVLVEE--T--GEELEAR- 131 (455)
T ss_dssp EE--CCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEESCEEE-S-------SSSEEEETT--T--CCEEEEE-
T ss_pred cc--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeEEEE-e-------cCCeEEEee--C--CEEEEec-
Confidence 10 0001123333333 2344444554 556555432 2 223444432 1 2457899
Q ss_pred eeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccc
Q psy12350 159 QVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFAR 238 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 238 (1129)
+||+||| +.|..|+++|.....+ ..+..+ .
T Consensus 132 ----~lviAtG--~~p~~~~~~g~~~~~v-----------------~~~~~~---------------------------~ 161 (455)
T 2yqu_A 132 ----YILIATG--SAPLIPPWAQVDYERV-----------------VTSTEA---------------------------L 161 (455)
T ss_dssp ----EEEECCC--EEECCCTTBCCCSSSE-----------------ECHHHH---------------------------T
T ss_pred ----EEEECCC--CCCCCCCCCCCCcCcE-----------------echHHh---------------------------h
Confidence 9999999 7788887765210000 000000 0
Q ss_pred cccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCeE
Q psy12350 239 CSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNVV 304 (1129)
Q Consensus 239 ~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i~ 304 (1129)
.+. ...++++ | ||||++|+|+|..|++.|.+|+++++.+.+++...+ -++.
T Consensus 162 ---~~~-~~~~~vv-------I----iGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 226 (455)
T 2yqu_A 162 ---SFP-EVPKRLI-------V----VGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIR 226 (455)
T ss_dssp ---CCS-SCCSEEE-------E----ECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEE
T ss_pred ---ccc-cCCCeEE-------E----ECCCHHHHHHHHHHHHcCCEEEEEecCCccccccCHHHHHHHHHHHHHCCCEEE
Confidence 010 0123333 3 899999999999999999999999998877653221 1456
Q ss_pred EcCCceEEcCC--c--eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEeccccc
Q psy12350 305 KKPDIAELTPT--G--VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYR 379 (1129)
Q Consensus 305 ~~~~v~~~~~~--~--v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~ 379 (1129)
.+..|++++.+ + +.++||+++++|.||+|+|++++.+++. +..++.++++..+.+..+ +.++.|++|++|....
T Consensus 227 ~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~-~~t~~~~iya~GD~~~ 305 (455)
T 2yqu_A 227 TGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEH-LRTRVPHIYAIGDVVR 305 (455)
T ss_dssp CSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTT-SBCSSTTEEECGGGSS
T ss_pred ECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCC-cccCCCCEEEEecCCC
Confidence 67788888643 3 4556888999999999999999988742 234555554433333333 2357899999998754
Q ss_pred ccc--cccccceeeehhhccc
Q psy12350 380 YPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 380 ~~~--~~~~~~~~~~a~~~~~ 398 (1129)
.|. .....|++.+|.++.+
T Consensus 306 ~~~~~~~A~~~g~~aa~~i~~ 326 (455)
T 2yqu_A 306 GPMLAHKASEEGIAAVEHMVR 326 (455)
T ss_dssp SCCCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHhHHHHHHHHcC
Confidence 322 1123777777777764
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-20 Score=210.22 Aligned_cols=274 Identities=14% Similarity=0.082 Sum_probs=162.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcccccc-Ccccccccccccccc---
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMY-KSLKTNLPKDLMELC--- 815 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y-~~~~~~~~~~~~~~~--- 815 (1129)
.+++|||+||+|++||.+|.+.| ++|+|||+ +.+||+|... +|-. ++|...... ..+..........+.
T Consensus 7 yDvvIIG~GpAGl~aA~~l~~~g--~~V~liE~-~~~gG~~~~~---~~i~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
T 4gcm_A 7 FDIAIIGAGPAGMTAAVYASRAN--LKTVMIER-GIPGGQMANT---EEVE-NFPGFEMITGPDLSTKMFEHAKKFGAVY 79 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEES-SCTTGGGGGC---SCBC-CSTTCSSBCHHHHHHHHHHHHHHTTCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CCEEEEec-CCCCCeeecc---cccC-CcCCccccchHHHHHHHHHHHhhccccc
Confidence 57899999999999999999999 99999998 4689988643 2210 111100000 000000000000000
Q ss_pred --C----------CCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHH
Q psy12350 816 --G----------YGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLD 883 (1129)
Q Consensus 816 --~----------~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~e 883 (1129)
. ...-......+.....++.+|+.|+.|++||.+.+.++.+++....+...+++|+|+|||+|++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E 159 (312)
T 4gcm_A 80 QYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVE 159 (312)
T ss_dssp EECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHH
T ss_pred cceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCcCCCCChhhhCCccEEeeeccCccccCCCEEEEECCCHHHHH
Confidence 0 0000000112222334455999999999999998888777776666666678999999999999999
Q ss_pred HHHHHHhcCCEEEEEecCCCCccchhhhhcccc--EEEEecCCccccccCCCCCeEEcCC-eeEEeCCcEEecCCcEeec
Q psy12350 884 ITLDIATTGKQAVVVGSGQSGLDITLDIATRAS--TVFLSHHSERVTSLCLPNNVVLKPD-VAELTPTGVRFQDGSYEQV 960 (1129)
Q Consensus 884 iA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~V~~~~~-i~~v~~~~V~~~dG~~~~~ 960 (1129)
+|..|++.|++||++++.+..++.........+ ....... ... ..+..... ............++..+++
T Consensus 160 ~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (312)
T 4gcm_A 160 EGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWS--HTL-----KSINEKDGKVGSVTLTSTKDGSEETHEA 232 (312)
T ss_dssp HHHHHTTTCSEEEEECSSSSCCSCHHHHHHHHHCTTEEEECS--EEE-----EEEEEETTEEEEEEEEETTTCCEEEEEC
T ss_pred HHHHHHhcCCEEEEEecccccCcchhHHHHHHHhcCcceeee--cce-----eeeeccccccccceeeeecCCceeEEee
Confidence 999999999999999987765543221111000 0000000 000 00000000 0000000011123446799
Q ss_pred cEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc--chhHHHHHHHHHHHHHH
Q psy12350 961 DIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT--LLFNLFDLQVRLFQQLM 1030 (1129)
Q Consensus 961 D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~~a~~l 1030 (1129)
|.|++++|.+++..++.. .++..+...+ .+. ..+.++.||||++||+... .....+..|++.+|..+
T Consensus 233 d~v~~~~g~~~~~~~~~~-~g~~~~~G~I-~vd-~~~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i 301 (312)
T 4gcm_A 233 DGVFIYIGMKPLTAPFKD-LGITNDVGYI-VTK-DDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSA 301 (312)
T ss_dssp SEEEECSCEEESCGGGGG-GTCBCTTSCB-CCC-TTSBCSSTTEEECSTTBSCSCCSHHHHHHHHHHHHHHH
T ss_pred eeEEeecCCCcCchhHHh-cceecCCCeE-eeC-CCCccCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHH
Confidence 999999999999776654 5555443322 222 2345689999999998753 34577888888888765
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-21 Score=231.14 Aligned_cols=133 Identities=14% Similarity=0.115 Sum_probs=95.7
Q ss_pred CCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCceEEcCC--c--eEEcCC---C
Q psy12350 265 AANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAELTPT--G--VRFQDG---S 323 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~~~~--~--v~~~dg---~ 323 (1129)
||+|++|+|+|..|++.|.+|+++++.+.+++...+. ++..+..|++++.+ + +.+.++ +
T Consensus 186 iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~ 265 (476)
T 3lad_A 186 IGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEK 265 (476)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEE
T ss_pred ECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcE
Confidence 8999999999999999999999999998876633221 45567788888643 2 667765 5
Q ss_pred EeecCEEEEcccccccCCCC-CCCCCeEeecCcccccccccccCCCCCeEEecccccccc--cccccceeeehhhccc
Q psy12350 324 YEQVDIILYCTGYTYRYPFL-HESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 324 ~~~~D~VI~atG~~~~~~~l-~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
++++|.||+|+|++++.++| -+..++.++++..+....++ .++.|++|++|.....|. .....|++.+|.++.+
T Consensus 266 ~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~-~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g 342 (476)
T 3lad_A 266 SQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYC-ATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAG 342 (476)
T ss_dssp EEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTS-BCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCc-ccCCCCEEEEEccCCCcccHHHHHHHHHHHHHHhcC
Confidence 68999999999999999864 34566777665443333332 267899999998763322 1223777777777653
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-20 Score=213.54 Aligned_cols=271 Identities=12% Similarity=0.081 Sum_probs=175.7
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcc----cCCcCcccccCC----CCCCCCCCCCccccccCcccc-----
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQ----ADNIGGTWLYTE----HIGCDQYGLPVHSSMYKSLKT----- 805 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~----~~~~GG~w~~~~----~~g~~~~g~p~~~~~y~~~~~----- 805 (1129)
.-+++|||+|++|+++|..|.+.| ++|+|||+ +..+||.|.... +++... .+. ...+...+..
T Consensus 22 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~ 97 (338)
T 3itj_A 22 HNKVTIIGSGPAAHTAAIYLARAE--IKPILYEGMMANGIAAGGQLTTTTEIENFPGFPD-GLT-GSELMDRMREQSTKF 97 (338)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTT-CEE-HHHHHHHHHHHHHHT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEecCCCCCCCcCcccccchhhcccCCCcc-cCC-HHHHHHHHHHHHHHc
Confidence 457899999999999999999999 99999999 448999998543 222110 000 0000000000
Q ss_pred ccc---ccccccc--C--CCCCC---CCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCC--CCCCCeEE
Q psy12350 806 NLP---KDLMELC--G--YGHKG---NADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPE--PFAGKQAV 873 (1129)
Q Consensus 806 ~~~---~~~~~~~--~--~~~~~---~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~--~~~gk~Vv 873 (1129)
+.. ....... . +.... .....+.....++.+|+.|+.|++||.+.|.+..+|+..+.+.. .+.+|+|+
T Consensus 98 gv~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (338)
T 3itj_A 98 GTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLA 177 (338)
T ss_dssp TCEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEE
T ss_pred CCEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCCCCCchhccCccEEEchhcccchhhcCCCEEE
Confidence 000 0000000 0 00000 00111222233445899999999999887766667765544433 56799999
Q ss_pred EEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc--
Q psy12350 874 VVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG-- 949 (1129)
Q Consensus 874 VVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~-- 949 (1129)
|||+|.+|+|+|..|++.+.+|+++.+.+....... +. ..+.. ..+|++..+ +.+++.++
T Consensus 178 vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~~~~-~~-------------~~l~~--~~gv~i~~~~~v~~i~~~~~~ 241 (338)
T 3itj_A 178 VIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTI-MQ-------------KRAEK--NEKIEILYNTVALEAKGDGKL 241 (338)
T ss_dssp EECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHH-HH-------------HHHHH--CTTEEEECSEEEEEEEESSSS
T ss_pred EECCCHHHHHHHHHHHhcCCEEEEEEcCCccCCCHH-HH-------------HHHHh--cCCeEEeecceeEEEEcccCc
Confidence 999999999999999999999999988654332100 00 00000 126777765 78886543
Q ss_pred ---EEecC-----CcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc--chhHHH
Q psy12350 950 ---VRFQD-----GSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT--LLFNLF 1019 (1129)
Q Consensus 950 ---V~~~d-----G~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~~ 1019 (1129)
|++.+ ++++++|.||+|||++|+.+++.. ++.+++++...+......++.||||++|++... .....+
T Consensus 242 ~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~--~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~~~~~~A 319 (338)
T 3itj_A 242 LNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAG--QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITS 319 (338)
T ss_dssp EEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBT--TBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSCCCHHHH
T ss_pred EEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhC--ceEecCCCcEEEcCcccccCCCCEEEeeccCCCCccceeee
Confidence 77766 457899999999999999887765 677776555443344556789999999999853 456777
Q ss_pred HHHHHHHHHHHc
Q psy12350 1020 DLQVRLFQQLMQ 1031 (1129)
Q Consensus 1020 e~qa~~~a~~l~ 1031 (1129)
..||+.+|..+.
T Consensus 320 ~~~g~~aa~~i~ 331 (338)
T 3itj_A 320 AGSGCMAALDAE 331 (338)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHHHHHH
Confidence 788888877654
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-21 Score=226.42 Aligned_cols=284 Identities=14% Similarity=0.138 Sum_probs=173.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||..|++ .|++|+|||+.+.+||+|.|. +++|
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~--~G~~V~v~e~~~~~GG~l~~g------------------------------ip~~ 168 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRA--KGYEVHVYDRYDRMGGLLVYG------------------------------IPGF 168 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHH--HTCCEEEECSSSSCSTHHHHT------------------------------SCTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCCeeeec------------------------------CCCc
Confidence 35799999999999999999999 569999999999999998851 1111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
....++.++..++.+++++ .+++++.|.. .+++ .. ....|| +||+|
T Consensus 169 ----------~~~~~~~~~~~~~l~~~gv--~~~~~~~v~~-----------~v~~---~~---~~~~~d-----~vvlA 214 (456)
T 2vdc_G 169 ----------KLEKSVVERRVKLLADAGV--IYHPNFEVGR-----------DASL---PE---LRRKHV-----AVLVA 214 (456)
T ss_dssp ----------TSCHHHHHHHHHHHHHTTC--EEETTCCBTT-----------TBCH---HH---HHSSCS-----EEEEC
T ss_pred ----------cCCHHHHHHHHHHHHHCCc--EEEeCCEecc-----------EEEh---hH---hHhhCC-----EEEEe
Confidence 1123566777777788877 7888877631 1111 11 113489 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCccccccccc-chhhhcccccccCCCCCCccchhcccccccccccc--cc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRS-EKYLNSLCSMMRDESPVPPVLLKIYFESFARCSED--FT 244 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~ 244 (1129)
||.. .|..+++||... .+.+. ..|+...... .+... ..... +.
T Consensus 215 tG~~-~~~~~~ipG~~~------------------~gv~~a~~~l~~~~~~--------------~~~~~-~~~~~~g~~ 260 (456)
T 2vdc_G 215 TGVY-KARDIKAPGSGL------------------GNIVAALDYLTTSNKV--------------SLGDT-VEAYENGSL 260 (456)
T ss_dssp CCCC-EECCTTCSCCTT------------------TTEEEHHHHHHHHHHH--------------HCTTT-CSSCCTTCS
T ss_pred cCCC-CCCCCCCCCCcC------------------CCcEEHHHHHHHhhhh--------------hcccc-ccccccccc
Confidence 9942 366677776321 11111 1111100000 00000 00000 11
Q ss_pred cccccceeEeeceeeeecCCCCCCCCcccchhhhccccc-EEEEccccCCc-ccccC---------CCCeEEcCCceEEc
Q psy12350 245 EFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEAT-TVFLSHHSEHV-KKLRF---------PNNVVKKPDIAELT 313 (1129)
Q Consensus 245 ~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~-~V~lv~r~~~~-~~~~~---------~~~i~~~~~v~~~~ 313 (1129)
...++++ +| ||||++|+|+|..+.+.|. +|++++|++.. ++... .-++.....++++.
T Consensus 261 ~~~gk~V-------vV----IGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e~~~~~~~Gv~~~~~~~~~~i~ 329 (456)
T 2vdc_G 261 NAAGKHV-------VV----LGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPEGFT 329 (456)
T ss_dssp CCCCSEE-------EE----ECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHHHHHHHHTTCEEECCSSSCCEE
T ss_pred ccCCCEE-------EE----ECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHHHHHHHHCCCEEEeCCCceEEe
Confidence 1123344 44 8999999999999888875 79999998765 22110 11334455566664
Q ss_pred CCc----eEEc------------------CC--CEeecCEEEEcccccccCC--CCCCCCCeEeecCcccccccccccCC
Q psy12350 314 PTG----VRFQ------------------DG--SYEQVDIILYCTGYTYRYP--FLHESCGIKVVNKNVQPLYKHLINIE 367 (1129)
Q Consensus 314 ~~~----v~~~------------------dg--~~~~~D~VI~atG~~~~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~ 367 (1129)
+++ |.+. +| .++++|.||+|+|++++.. ++. ..++.++++..+....+.+.++
T Consensus 330 ~~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~-~~gl~~~~~G~i~vd~~~~~Ts 408 (456)
T 2vdc_G 330 GDTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFD-EPELKVTRWGTLLVDHRTKMTN 408 (456)
T ss_dssp EEEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHH-STTSCBCTTSSBCCCTTTCBCS
T ss_pred CCCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcc-cCCeeECCCCCEEECCCCCcCC
Confidence 332 3332 23 3579999999999998754 665 4556666555444444334468
Q ss_pred CCCeEEecccccccc--cccccceeeehhhcccccccc
Q psy12350 368 HPSMCIIGYTYRYPF--LHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 368 ~p~l~~~G~~~~~~~--~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
.|++|++|.....|. ..+..|++.+|.++.+.+.+.
T Consensus 409 ~~~VfA~GD~~~g~~~v~~A~~~G~~aA~~i~~~L~~~ 446 (456)
T 2vdc_G 409 MDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHAYAKAK 446 (456)
T ss_dssp STTEEECGGGGSSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeccccCCchHHHHHHHHHHHHHHHHHHHhhcC
Confidence 899999999854332 334488888888888776553
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-20 Score=223.77 Aligned_cols=295 Identities=11% Similarity=0.143 Sum_probs=173.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccC-----cccccccccCCcccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHS-----SMYKSLKTNLPKEIM 82 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~-----~~y~~l~~~~~~~~~ 82 (1129)
..+||+||||||||++||..|++ .|++|+|+|+++.+||+|.+ .+|. |.+. ..|+.+.....
T Consensus 4 ~~~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE~~~~~GG~~~~---~g~~----psk~l~~~~~~~~~~~~~~~---- 70 (478)
T 1v59_A 4 KSHDVVIIGGGPAGYVAAIKAAQ--LGFNTACVEKRGKLGGTCLN---VGCI----PSKALLNNSHLFHQMHTEAQ---- 70 (478)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSHHHHH---HSHH----HHHHHHHHHHHHHHHHHTSG----
T ss_pred CcCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCcCCccce---eccH----HHHHHHHHHHHHHHHHHHHH----
Confidence 35799999999999999999999 56899999999999999974 2221 1000 01111110010
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHH-----------HHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCcc
Q psy12350 83 ELSGYHHKGHPDKSYIAANDVLEY-----------LNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTV 151 (1129)
Q Consensus 83 ~~~d~~~~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 151 (1129)
.+.++.. .....+..++..+ +...+++.++ .+++++.+.. +...+.+.. .++..
T Consensus 71 ---~~gi~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~~~--------~~~~v~V~~-~~G~~ 135 (478)
T 1v59_A 71 ---KRGIDVN-GDIKINVANFQKAKDDAVKQLTGGIELLFKKNKV--TYYKGNGSFE--------DETKIRVTP-VDGLE 135 (478)
T ss_dssp ---GGTEEEC-SCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESEEEES--------SSSEEEEEC-CTTCT
T ss_pred ---hcCcccC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEEEc--------cCCeEEEEe-cCCCc
Confidence 0000000 0001123333333 3344455555 6777776641 223344432 12212
Q ss_pred ce------EEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCC
Q psy12350 152 GF------YLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVP 225 (1129)
Q Consensus 152 ~~------~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 225 (1129)
.. ..|| +||+||| +.|. .+||.. +.+ . ...
T Consensus 136 ~~~~~~~~i~~d-----~lViAtG--s~p~--~~~g~~---~~~----------~---~v~------------------- 171 (478)
T 1v59_A 136 GTVKEDHILDVK-----NIIVATG--SEVT--PFPGIE---IDE----------E---KIV------------------- 171 (478)
T ss_dssp TCCSSCEEEEEE-----EEEECCC--EEEC--CCTTCC---CCS----------S---SEE-------------------
T ss_pred ccccccceEEeC-----EEEECcC--CCCC--CCCCCC---CCC----------c---eEE-------------------
Confidence 34 7899 9999999 4442 233310 000 0 000
Q ss_pred ccchhcccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC----
Q psy12350 226 PVLLKIYFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---- 301 (1129)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---- 301 (1129)
...+.+. . ++ .+++++| ||||++|+|+|..|++.|.+||+++|.+.+++...++
T Consensus 172 ------------~~~~~~~-~--~~---~~~~vvV----iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~ 229 (478)
T 1v59_A 172 ------------SSTGALS-L--KE---IPKRLTI----IGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKA 229 (478)
T ss_dssp ------------CHHHHTT-C--SS---CCSEEEE----ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHH
T ss_pred ------------cHHHHHh-h--hc---cCceEEE----ECCCHHHHHHHHHHHHcCCEEEEEEeCCccccccCHHHHHH
Confidence 0000000 0 00 1233344 8999999999999999999999999998876632211
Q ss_pred ----------CeEEcCCceEEcC--C----ceEEc-----CCCEeecCEEEEcccccccCC--CCCCCCCeEeecCcccc
Q psy12350 302 ----------NVVKKPDIAELTP--T----GVRFQ-----DGSYEQVDIILYCTGYTYRYP--FLHESCGIKVVNKNVQP 358 (1129)
Q Consensus 302 ----------~i~~~~~v~~~~~--~----~v~~~-----dg~~~~~D~VI~atG~~~~~~--~l~~~~~~~~~~~~~~~ 358 (1129)
++..+..|+++++ + .|.++ +++++++|.||+|+|++++.+ +++ ..++.++++..+.
T Consensus 230 l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~-~~g~~~~~~G~i~ 308 (478)
T 1v59_A 230 TQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAE-KIGLEVDKRGRLV 308 (478)
T ss_dssp HHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTT-TTTCCBCTTSCBC
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCch-hcCceeCCCCCEe
Confidence 3455667888864 2 25565 356789999999999999988 555 4567766554333
Q ss_pred cccccccCCCCCeEEecccccccc--cccccceeeehhhccc
Q psy12350 359 LYKHLINIEHPSMCIIGYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 359 l~~~~~~~~~p~l~~~G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
...++ .+++|++|++|.....|. .....||+.+|.++.+
T Consensus 309 vd~~~-~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 349 (478)
T 1v59_A 309 IDDQF-NSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKT 349 (478)
T ss_dssp CCTTS-BCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred ECcCC-ccCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcC
Confidence 33332 267899999998854321 1223777777777654
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-21 Score=224.15 Aligned_cols=280 Identities=14% Similarity=0.172 Sum_probs=171.0
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc-cCCCCCCCC----CCCCcc-ccccCccccc--cccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL-YTEHIGCDQ----YGLPVH-SSMYKSLKTN--LPKDLM 812 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~-~~~~~g~~~----~g~p~~-~~~y~~~~~~--~~~~~~ 812 (1129)
.++|||+|++|+.+|.+|++.|++.+|+|+|+++..++... .....+... ..+... ...+...... ...+..
T Consensus 2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~ 81 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI 81 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence 36899999999999999999997788999999876543210 000000000 000000 0000000000 000000
Q ss_pred cccCC----CCC--C-CCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccC-CCC-CCCCCCeEEEEcCCccHHH
Q psy12350 813 ELCGY----GHK--G-NADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDY-RTP-EPFAGKQAVVVGSGQSGLD 883 (1129)
Q Consensus 813 ~~~~~----~~~--~-~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~-~~~-~~~~gk~VvVVG~G~Sg~e 883 (1129)
..... ... . .....+....-++.+|+.|++|++||...|..+.+..... +.. ....+++|+|||+|.+|+|
T Consensus 82 ~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E 161 (437)
T 4eqs_A 82 AINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLE 161 (437)
T ss_dssp EEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCCCCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHH
T ss_pred EEEccCcEEEEEeccCCceEEEEcCEEEECCCCccccccccCceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchhh
Confidence 00000 000 0 0000011123345599999999999865433221111100 000 1124789999999999999
Q ss_pred HHHHHHhcCCEEEEEecCCCCccch-hhhhccccEEEEecCCccccccCCCCCeEEc--CCeeEEeCCcEEecCCcEeec
Q psy12350 884 ITLDIATTGKQAVVVGSGQSGLDIT-LDIATRASTVFLSHHSERVTSLCLPNNVVLK--PDVAELTPTGVRFQDGSYEQV 960 (1129)
Q Consensus 884 iA~~la~~~~~V~vv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~i~~v~~~~V~~~dG~~~~~ 960 (1129)
+|..+++.|.+||++++....++.. +.......+.+.. .+|+++ ..|++++++.+.+++|+++++
T Consensus 162 ~A~~l~~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~------------~gV~i~~~~~v~~~~~~~v~~~~g~~~~~ 229 (437)
T 4eqs_A 162 VLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDK------------REIPYRLNEEINAINGNEITFKSGKVEHY 229 (437)
T ss_dssp HHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHHHHHH------------TTCCEEESCCEEEEETTEEEETTSCEEEC
T ss_pred hHHHHHhcCCcceeeeeeccccccccchhHHHHHHHhhc------------cceEEEeccEEEEecCCeeeecCCeEEee
Confidence 9999999999999999877665432 2222211111111 144444 449999999999999999999
Q ss_pred cEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----------chhHHHHHHHHHHHHH
Q psy12350 961 DIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----------LLFNLFDLQVRLFQQL 1029 (1129)
Q Consensus 961 D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----------~~~~~~e~qa~~~a~~ 1029 (1129)
|.||+|+|++|+..+++. .|+++++++...+..+ +.++.||||++||+... ...+.+..||+.+|++
T Consensus 230 D~vl~a~G~~Pn~~~~~~-~gl~~~~~G~I~vd~~-~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~n 307 (437)
T 4eqs_A 230 DMIIEGVGTHPNSKFIES-SNIKLDRKGFIPVNDK-FETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQ 307 (437)
T ss_dssp SEEEECCCEEESCGGGTT-SSCCCCTTSCEECCTT-CBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHH
T ss_pred eeEEEEeceecCcHHHHh-hhhhhccCCcEecCCC-ccCCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHH
Confidence 999999999999887764 6788877654444333 34689999999998642 2467899999999999
Q ss_pred HcCCC
Q psy12350 1030 MQGHI 1034 (1129)
Q Consensus 1030 l~g~~ 1034 (1129)
+.|..
T Consensus 308 i~g~~ 312 (437)
T 4eqs_A 308 IAGND 312 (437)
T ss_dssp HHSCT
T ss_pred HcCCC
Confidence 99864
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-20 Score=212.42 Aligned_cols=267 Identities=13% Similarity=0.086 Sum_probs=177.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCC----CCCCCCCCCccccccCcccc-----ccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEH----IGCDQYGLPVHSSMYKSLKT-----NLP-- 808 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~----~g~~~~g~p~~~~~y~~~~~-----~~~-- 808 (1129)
.+++|||+|++|+++|..|.+.| ++|+|||++ +||.|.+... ++... +. ...+...+.. +..
T Consensus 16 ~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~--~gg~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~v~~~ 88 (323)
T 3f8d_A 16 FDVIIVGLGPAAYGAALYSARYM--LKTLVIGET--PGGQLTEAGIVDDYLGLIE--IQ-ASDMIKVFNKHIEKYEVPVL 88 (323)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS--TTGGGGGCCEECCSTTSTT--EE-HHHHHHHHHHHHHTTTCCEE
T ss_pred cCEEEECccHHHHHHHHHHHHCC--CcEEEEecc--CCCeecccccccccCCCCC--CC-HHHHHHHHHHHHHHcCCEEE
Confidence 47899999999999999999999 999999997 9999985321 11100 00 0000000000 000
Q ss_pred -ccccccc----CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHH
Q psy12350 809 -KDLMELC----GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLD 883 (1129)
Q Consensus 809 -~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~e 883 (1129)
....... .+.........+.....++.+|+.|+.|++||.+.|.+..+|...+.+...+.+++|+|||+|.+|+|
T Consensus 89 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e 168 (323)
T 3f8d_A 89 LDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALE 168 (323)
T ss_dssp ESCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHH
T ss_pred EEEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccCCCCchhhhcCCceEEeccCCHhHcCCCEEEEECCCHHHHH
Confidence 0000000 00000000011222233444999999999999998888878777666666678999999999999999
Q ss_pred HHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC----cEEecC---
Q psy12350 884 ITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT----GVRFQD--- 954 (1129)
Q Consensus 884 iA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~----~V~~~d--- 954 (1129)
+|..|++.+.+|+++.+.+..... +.+. ..+. ...+|++..+ +.+++.+ +|++.|
T Consensus 169 ~a~~l~~~g~~v~~~~~~~~~~~~-~~~~-------------~~~~--~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~ 232 (323)
T 3f8d_A 169 GAEILSSYSTKVYLIHRRDTFKAQ-PIYV-------------ETVK--KKPNVEFVLNSVVKEIKGDKVVKQVVVENLKT 232 (323)
T ss_dssp HHHHHHHHSSEEEEECSSSSCCSC-HHHH-------------HHHH--TCTTEEEECSEEEEEEEESSSEEEEEEEETTT
T ss_pred HHHHHHHhCCeEEEEEeCCCCCcC-HHHH-------------HHHH--hCCCcEEEeCCEEEEEeccCceeEEEEEECCC
Confidence 999999999999999886654331 1100 0000 0126777765 7888665 377776
Q ss_pred Cc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc----chhHHHHHHHHHHHH
Q psy12350 955 GS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT----LLFNLFDLQVRLFQQ 1028 (1129)
Q Consensus 955 G~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~----~~~~~~e~qa~~~a~ 1028 (1129)
|+ ++++|.||+|+|++|+.+++.. +|+.+++++...+.. .+.++.||||++|++... .....+..||+.+|.
T Consensus 233 g~~~~~~~D~vv~a~G~~p~~~~~~~-~g~~~~~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~ 310 (323)
T 3f8d_A 233 GEIKELNVNGVFIEIGFDPPTDFAKS-NGIETDTNGYIKVDE-WMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAAT 310 (323)
T ss_dssp CCEEEEECSEEEECCCEECCHHHHHH-TTCCBCTTSSBCCCT-TCBCSSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHH
T ss_pred CceEEEEcCEEEEEECCCCChhHHhh-cCeeecCCCcEecCC-CceecCCCEEEcceecCCCCcccceeehhhHHHHHHH
Confidence 87 6899999999999999887764 667766655443333 344689999999999763 456788888888887
Q ss_pred HHc
Q psy12350 1029 LMQ 1031 (1129)
Q Consensus 1029 ~l~ 1031 (1129)
.+.
T Consensus 311 ~i~ 313 (323)
T 3f8d_A 311 SAY 313 (323)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.4e-20 Score=206.89 Aligned_cols=270 Identities=15% Similarity=0.162 Sum_probs=173.8
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC----CCCCCCCCCCccccccCcccccc---cccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE----HIGCDQYGLPVHSSMYKSLKTNL---PKDL 811 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~----~~g~~~~g~p~~~~~y~~~~~~~---~~~~ 811 (1129)
..+++|||+|++|+++|..|.+.| ++|+|+|++ .+||.|.... +++... +++ ...+...+.... ...+
T Consensus 8 ~~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~-~~gg~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~gv~~ 82 (325)
T 2q7v_A 8 DYDVVIIGGGPAGLTAAIYTGRAQ--LSTLILEKG-MPGGQIAWSEEVENFPGFPE-PIA-GMELAQRMHQQAEKFGAKV 82 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTGGGGGCSCBCCSTTCSS-CBC-HHHHHHHHHHHHHHTTCEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHcC--CcEEEEeCC-CCCcccccccccccCCCCCC-CCC-HHHHHHHHHHHHHHcCCEE
Confidence 357899999999999999999999 999999998 7999997532 222100 000 000000000000 0000
Q ss_pred c--cccCCCCC--CC--------CCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCc
Q psy12350 812 M--ELCGYGHK--GN--------ADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQ 879 (1129)
Q Consensus 812 ~--~~~~~~~~--~~--------~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~ 879 (1129)
. ........ .. ....+.....++.+|+.|+.|++||.+.|.+..+|+..+.+...+.+|+|+|||+|.
T Consensus 83 ~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~ 162 (325)
T 2q7v_A 83 EMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGD 162 (325)
T ss_dssp EECCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSH
T ss_pred EeeeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhccCceEEEeccCCHHHcCCCEEEEECCCH
Confidence 0 00000000 00 000111122233389999999999998887777776655444456789999999999
Q ss_pred cHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC----cEEec
Q psy12350 880 SGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT----GVRFQ 953 (1129)
Q Consensus 880 Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~----~V~~~ 953 (1129)
+|+|+|..|++.+.+|+++.+.+.... .+.+.. .+. ...+|++..+ +.++.++ +|++.
T Consensus 163 ~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~~~~~-------------~l~--~~~gv~i~~~~~v~~i~~~~~v~~v~~~ 226 (325)
T 2q7v_A 163 AAVEEGMFLTKFADEVTVIHRRDTLRA-NKVAQA-------------RAF--ANPKMKFIWDTAVEEIQGADSVSGVKLR 226 (325)
T ss_dssp HHHHHHHHHTTTCSEEEEECSSSSCCS-CHHHHH-------------HHH--TCTTEEEECSEEEEEEEESSSEEEEEEE
T ss_pred HHHHHHHHHHhcCCEEEEEeCCCcCCc-chHHHH-------------HHH--hcCCceEecCCceEEEccCCcEEEEEEE
Confidence 999999999999999999988654321 111100 000 0126777655 7777654 47775
Q ss_pred ---CCc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc--chhHHHHHHHHHH
Q psy12350 954 ---DGS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT--LLFNLFDLQVRLF 1026 (1129)
Q Consensus 954 ---dG~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~~ 1026 (1129)
+|+ ++++|.||+|||++|+.+++.. + +.+++++...+... +.++.||||++|++... .....+..||+.+
T Consensus 227 ~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~-~-~~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~a 303 (325)
T 2q7v_A 227 NLKTGEVSELATDGVFIFIGHVPNTAFVKD-T-VSLRDDGYVDVRDE-IYTNIPMLFAAGDVSDYIYRQLATSVGAGTRA 303 (325)
T ss_dssp ETTTCCEEEEECSEEEECSCEEESCGGGTT-T-SCBCTTSCBCCBTT-TBCSSTTEEECSTTTCSSCCCHHHHHHHHHHH
T ss_pred ECCCCcEEEEEcCEEEEccCCCCChHHHhh-h-cccCCCccEecCCC-CccCCCCEEEeecccCccHHHHHHHHHHHHHH
Confidence 676 6899999999999999888875 3 55554443333333 45689999999999764 4568888999988
Q ss_pred HHHHcC
Q psy12350 1027 QQLMQG 1032 (1129)
Q Consensus 1027 a~~l~g 1032 (1129)
|..+..
T Consensus 304 a~~i~~ 309 (325)
T 2q7v_A 304 AMMTER 309 (325)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887753
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=7.6e-20 Score=218.63 Aligned_cols=268 Identities=21% Similarity=0.284 Sum_probs=174.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCcc-ccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPVH-SSM 799 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~~-~~~ 799 (1129)
-+++|||+|++|+++|+.|++.| .+|+|||++ .+||+|.+. ||-+ +|++.. ...
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~~g--~~V~liE~~-~~GG~c~~~---gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~ 76 (500)
T 1onf_A 3 YDLIVIGGGSGGMAAARRAARHN--AKVALVEKS-RLGGTCVNV---GCVPKKIMFNAASVHDILENSRHYGFDTKFSFN 76 (500)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-STTHHHHHT---SHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCC
T ss_pred cCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCC-CcCcccccc---CCcchHHHHHHHHHHHHHHhhHhcCCccCCccC
Confidence 47899999999999999999999 999999997 599999742 2210 111100 000
Q ss_pred cCcccc-------c----c----cc-ccccccCCC--CCCC-----C-------------CCCCCChhhhhhccCCCCCC
Q psy12350 800 YKSLKT-------N----L----PK-DLMELCGYG--HKGN-----A-------------DKSYIGAKDVLENYNHPIYP 843 (1129)
Q Consensus 800 y~~~~~-------~----~----~~-~~~~~~~~~--~~~~-----~-------------~~~~~~~~~v~~~~~~P~~P 843 (1129)
++.+.. . . .+ ...-+.... .... . ...+.....++.+|+.|.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~p 156 (500)
T 1onf_A 77 LPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFP 156 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCCC
Confidence 000000 0 0 00 000000000 0000 0 01112222334499999999
Q ss_pred CCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEec
Q psy12350 844 EFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSH 922 (1129)
Q Consensus 844 ~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~ 922 (1129)
++||.+ .++|+.++..... +|+|+|||+|.+|+|+|..|++.|.+||++++.+..++. .+.+.....+.+
T Consensus 157 ~i~G~~----~~~~~~~~~~~~~--~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l--- 227 (500)
T 1onf_A 157 PVKGIE----NTISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDM--- 227 (500)
T ss_dssp SCTTGG----GCEEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHH---
T ss_pred CCCCCC----cccCHHHHhccCC--CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcccchhhHHHHHHHH---
Confidence 999974 3678777766554 899999999999999999999999999999987765542 222222211111
Q ss_pred CCccccccCCCCCeEEcCC--eeEEeCC-----cEEecCCcE-eeccEEEEccCccCcCCCC-CCCCCeeecCCcccccc
Q psy12350 923 HSERVTSLCLPNNVVLKPD--VAELTPT-----GVRFQDGSY-EQVDIILCCTGYSNHYPFL-HESCGIKVVNKNVQPLY 993 (1129)
Q Consensus 923 ~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~~~dG~~-~~~D~VI~aTG~~~~~~fl-~~~~g~~~~~~~~~~ly 993 (1129)
. ..+|+++.+ |.+++++ .|++.||++ +++|.||+|+|++|+.++| -+.+|+++ +++...+.
T Consensus 228 ------~---~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~-~~G~i~vd 297 (500)
T 1onf_A 228 ------K---KNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVET-NNNYIVVD 297 (500)
T ss_dssp ------H---HTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCB-SSSCEEEC
T ss_pred ------H---hCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccc-cCCEEEEC
Confidence 1 125666654 7888642 377889988 9999999999999998765 35578877 44433333
Q ss_pred cceeecCCCCcEEEcccc----------------------------------cc-chhHHHHHHHHHHHHHHcCC
Q psy12350 994 KHTINIEHPTMFILGVPR----------------------------------HT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 994 ~~~~~~~~p~l~~iG~~~----------------------------------~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.+ +.++.||||++|++. .. ...+.+..||+.+|+.+.|.
T Consensus 298 ~~-~~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~ 371 (500)
T 1onf_A 298 EN-QRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLK 371 (500)
T ss_dssp TT-CBCSSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSC
T ss_pred CC-cccCCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCC
Confidence 33 346899999999987 12 34688999999999999874
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.6e-20 Score=208.51 Aligned_cols=268 Identities=16% Similarity=0.143 Sum_probs=176.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEE-EcccCCcCcccccCC----CCCCCCCCCCccccccCcccc-----ccc-
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTT-FEQADNIGGTWLYTE----HIGCDQYGLPVHSSMYKSLKT-----NLP- 808 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v-~E~~~~~GG~w~~~~----~~g~~~~g~p~~~~~y~~~~~-----~~~- 808 (1129)
.+++|||+|++|+++|..|.+.| ++|+| +|| +.+||.|.... +++..+ .++ ...+...+.. +..
T Consensus 5 ~~vvIIG~G~aGl~aA~~l~~~g--~~v~li~e~-~~~gG~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~v~~ 79 (315)
T 3r9u_A 5 LDVAIIGGGPAGLSAGLYATRGG--LKNVVMFEK-GMPGGQITSSSEIENYPGVAQ-VMD-GISFMAPWSEQCMRFGLKH 79 (315)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHT--CSCEEEECS-SSTTGGGGGCSCBCCSTTCCS-CBC-HHHHHHHHHHHHTTTCCEE
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--CCeEEEEeC-CCCCceeeeeceeccCCCCCC-CCC-HHHHHHHHHHHHHHcCcEE
Confidence 46899999999999999999999 99999 999 78999987542 222110 000 0000000000 000
Q ss_pred --cccccc-cC----CC--CCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCc
Q psy12350 809 --KDLMEL-CG----YG--HKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQ 879 (1129)
Q Consensus 809 --~~~~~~-~~----~~--~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~ 879 (1129)
...... .+ +. ...+ . .+.....++.+|+.|+.|++||.+.|.+..+|+..+.+...+.+|+|+|||+|.
T Consensus 80 ~~~~v~~i~~~~~~~~~v~~~~~-~-~~~~d~lvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~ 157 (315)
T 3r9u_A 80 EMVGVEQILKNSDGSFTIKLEGG-K-TELAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGD 157 (315)
T ss_dssp ECCCEEEEEECTTSCEEEEETTS-C-EEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGGGGTTSEEEEECCBH
T ss_pred EEEEEEEEecCCCCcEEEEEecC-C-EEEeCEEEEeeCCCCCCCCCCChhhcCCCeEEeeecccccccCcCEEEEECCCH
Confidence 000000 00 00 0000 0 111222334489999999999999888888888777666667899999999999
Q ss_pred cHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc-----EEe
Q psy12350 880 SGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG-----VRF 952 (1129)
Q Consensus 880 Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~-----V~~ 952 (1129)
+|+|+|..|++.+.+|+++.+.+.... .+.+... .+. ..+|++..+ +.+++.++ |++
T Consensus 158 ~~~e~a~~l~~~g~~v~~~~~~~~~~~-~~~~~~~------------~~~---~~gv~~~~~~~v~~i~~~~~~~~~v~~ 221 (315)
T 3r9u_A 158 TALEEALYLANICSKIYLIHRRDEFRA-APSTVEK------------VKK---NEKIELITSASVDEVYGDKMGVAGVKV 221 (315)
T ss_dssp HHHHHHHHHHTTSSEEEEECSSSSCBS-CHHHHHH------------HHH---CTTEEEECSCEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCC-CHHHHHH------------HHh---cCCeEEEeCcEEEEEEcCCCcEEEEEE
Confidence 999999999999999999988654321 1111000 000 236777654 77776543 666
Q ss_pred c--CCc--EeeccEEEEccCccCcCCCCCC--CCC-eeecCCcccccccceeecCCCCcEEEccccc--cchhHHHHHHH
Q psy12350 953 Q--DGS--YEQVDIILCCTGYSNHYPFLHE--SCG-IKVVNKNVQPLYKHTINIEHPTMFILGVPRH--TLLFNLFDLQV 1023 (1129)
Q Consensus 953 ~--dG~--~~~~D~VI~aTG~~~~~~fl~~--~~g-~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa 1023 (1129)
. +|+ ++++|.||+|+|++|+.+++.. .+| +.+++++...+.. .+.++.||||++|++.. ......+..||
T Consensus 222 ~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~-~~~t~~~~v~a~GD~~~~~~~~~~~A~~~g 300 (315)
T 3r9u_A 222 KLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDL-KMQTSVAGLFAAGDLRKDAPKQVICAAGDG 300 (315)
T ss_dssp ECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCT-TCBCSSTTEEECGGGBTTCCCCHHHHHHHH
T ss_pred EcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCC-CcccCCCCEEEeecccCCchhhhhhHHhhH
Confidence 6 886 6899999999999999887764 244 7776655443433 34568999999999863 34567888888
Q ss_pred HHHHHHHc
Q psy12350 1024 RLFQQLMQ 1031 (1129)
Q Consensus 1024 ~~~a~~l~ 1031 (1129)
+.+|..+.
T Consensus 301 ~~aa~~i~ 308 (315)
T 3r9u_A 301 AVAALSAM 308 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887663
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-20 Score=223.12 Aligned_cols=278 Identities=17% Similarity=0.246 Sum_probs=173.7
Q ss_pred eeccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC--------------------CCCCcc
Q psy12350 737 IKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ--------------------YGLPVH 796 (1129)
Q Consensus 737 ~~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~--------------------~g~p~~ 796 (1129)
|+..+++|||+|++|+++|..|.+.| .+|+|||+++.+||+|.+. ||-+ +|++..
T Consensus 23 m~~~dVvVIGgG~aGl~aA~~la~~G--~~V~liEk~~~~GG~~~~~---gciP~k~l~~~~~~~~~~~~~~~~~g~~~~ 97 (491)
T 3urh_A 23 MMAYDLIVIGSGPGGYVCAIKAAQLG--MKVAVVEKRSTYGGTCLNV---GCIPSKALLHASEMFHQAQHGLEALGVEVA 97 (491)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHH---SHHHHHHHHHHHHHHHHHHHSSGGGTEECC
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCccccc---cchhhHHHHHHHHHHHHHHhhHhhcCcccC
Confidence 34568999999999999999999999 9999999999999999742 3210 011000
Q ss_pred ccc--cCcccccc---------------cc-cc------ccccC---CCCCCCCC--CCCCChhhhhhccCCCCCCCCCC
Q psy12350 797 SSM--YKSLKTNL---------------PK-DL------MELCG---YGHKGNAD--KSYIGAKDVLENYNHPIYPEFKG 847 (1129)
Q Consensus 797 ~~~--y~~~~~~~---------------~~-~~------~~~~~---~~~~~~~~--~~~~~~~~v~~~~~~P~~P~i~G 847 (1129)
... |..+.... .+ .. ..+.+ +....... ..+.....++.+|+.| |.+||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p--~~ipg 175 (491)
T 3urh_A 98 NPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDV--AGIPG 175 (491)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEEC--CCBTT
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCC--CCCCC
Confidence 000 00000000 00 00 00000 00000000 0122223344488886 56788
Q ss_pred CCC-CCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCc
Q psy12350 848 KDM-CQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSE 925 (1129)
Q Consensus 848 ~~~-f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 925 (1129)
++. +.+..+++.+........+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l------ 249 (491)
T 3urh_A 176 VEVAFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRML------ 249 (491)
T ss_dssp BCCCCCSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSSSCHHHHHHHHHHH------
T ss_pred cccccCCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccccCCHHHHHHHHHHH------
Confidence 763 455555554443333446899999999999999999999999999999987765532 222222111111
Q ss_pred cccccCCCCCeEEcCC--eeEEeCC--c--EEecC---C--cEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccc
Q psy12350 926 RVTSLCLPNNVVLKPD--VAELTPT--G--VRFQD---G--SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLY 993 (1129)
Q Consensus 926 ~~~~~~~~~~V~~~~~--i~~v~~~--~--V~~~d---G--~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly 993 (1129)
. ..+|++..+ +.+++.+ + +.+.+ | +++++|.||+|||++|+.++|. +..|+.+++++...+.
T Consensus 250 ---~---~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd 323 (491)
T 3urh_A 250 ---T---KQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEID 323 (491)
T ss_dssp ---H---HTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCC
T ss_pred ---H---hCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeEC
Confidence 0 125666654 7777542 2 55553 5 5689999999999999988763 3357777765544444
Q ss_pred cceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCCC
Q psy12350 994 KHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 994 ~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
.. +.++.||||++|++... ...+.+..||+.+|+.+.|..
T Consensus 324 ~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 364 (491)
T 3urh_A 324 RH-FQTSIAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQA 364 (491)
T ss_dssp TT-CBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CC-CCCCCCCEEEEEecCCCccchhHHHHHHHHHHHHHcCCC
Confidence 33 44689999999998854 456899999999999998853
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-19 Score=202.35 Aligned_cols=268 Identities=12% Similarity=0.075 Sum_probs=171.6
Q ss_pred CccccccCCchhhHHHHHHhhCCCc-ceEEEcccCCcCcccccCC----CCCCCCCCCCccccccCcccc---ccccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGF-TCTTFEQADNIGGTWLYTE----HIGCDQYGLPVHSSMYKSLKT---NLPKDLM 812 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~-~v~v~E~~~~~GG~w~~~~----~~g~~~~g~p~~~~~y~~~~~---~~~~~~~ 812 (1129)
+++|||+|++|+++|..|.+.| . +|+|+|++ .+||.|.... +++... .++ ...+...+.. .....+.
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g--~~~v~lie~~-~~gg~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~v~~~ 77 (311)
T 2q0l_A 3 DCAIIGGGPAGLSAGLYATRGG--VKNAVLFEKG-MPGGQITGSSEIENYPGVKE-VVS-GLDFMQPWQEQCFRFGLKHE 77 (311)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--CSSEEEECSS-STTCGGGGCSCBCCSTTCCS-CBC-HHHHHHHHHHHHHTTSCEEE
T ss_pred eEEEECccHHHHHHHHHHHHCC--CCcEEEEcCC-CCCcccccccccccCCCCcc-cCC-HHHHHHHHHHHHHHcCCEEE
Confidence 5789999999999999999999 8 99999994 7899987431 222100 000 0000000000 0000000
Q ss_pred --cccCCCCCCC-------CCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHH
Q psy12350 813 --ELCGYGHKGN-------ADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLD 883 (1129)
Q Consensus 813 --~~~~~~~~~~-------~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~e 883 (1129)
.......... ....+.....++.+|+.|+.|++||.+.|.+..+|+..+.+.....+|+|+|||+|.+|+|
T Consensus 78 ~~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e 157 (311)
T 2q0l_A 78 MTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTAVE 157 (311)
T ss_dssp CSCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCCCBTHHHHBTTTEESCHHHHGGGGTTSEEEEECCSHHHHH
T ss_pred EEEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCCCCChhhccCCcEEEeecCChhhcCCCEEEEECCCHHHHH
Confidence 0000000000 0011111222333999999999999877766667765554444557899999999999999
Q ss_pred HHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----cEEec---
Q psy12350 884 ITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----GVRFQ--- 953 (1129)
Q Consensus 884 iA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~~~--- 953 (1129)
+|..|++.+.+|+++.+.+... ..+.+.. .+. ...+|++..+ +.++..+ +|++.
T Consensus 158 ~A~~l~~~g~~Vtlv~~~~~~~-~~~~~~~-------------~l~--~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~ 221 (311)
T 2q0l_A 158 EAIYLANICKKVYLIHRRDGFR-CAPITLE-------------HAK--NNDKIEFLTPYVVEEIKGDASGVSSLSIKNTA 221 (311)
T ss_dssp HHHHHHTTSSEEEEECSSSSCC-SCHHHHH-------------HHH--TCTTEEEETTEEEEEEEEETTEEEEEEEEETT
T ss_pred HHHHHHhcCCEEEEEeeCCccC-CCHHHHH-------------HHh--hCCCeEEEeCCEEEEEECCCCcEeEEEEEecC
Confidence 9999999999999998865431 1111110 010 0136777665 7777643 46776
Q ss_pred CCc--EeeccEEEEccCccCcCCCCCCCC----CeeecCCcccccccceeecCCCCcEEEcccccc--chhHHHHHHHHH
Q psy12350 954 DGS--YEQVDIILCCTGYSNHYPFLHESC----GIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT--LLFNLFDLQVRL 1025 (1129)
Q Consensus 954 dG~--~~~~D~VI~aTG~~~~~~fl~~~~----g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~ 1025 (1129)
+|+ ++++|.||+|+|++|+.+++.. . ++.+++++...+..+ +.++.||||++|++... .....+..||+.
T Consensus 222 ~g~~~~i~~D~vi~a~G~~p~~~~l~~-~g~~~~l~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~ 299 (311)
T 2q0l_A 222 TNEKRELVVPGFFIFVGYDVNNAVLKQ-EDNSMLCKCDEYGSIVVDFS-MKTNVQGLFAAGDIRIFAPKQVVCAASDGAT 299 (311)
T ss_dssp TCCEEEEECSEEEECSCEEECCGGGBC-TTSCBSSCBCTTSCBCCCTT-CBCSSTTEEECSTTBTTCCCCHHHHHHHHHH
T ss_pred CCceEEEecCEEEEEecCccChhhhhc-ccccceeEeccCCCEEeCCc-cccCCCCeEEcccccCcchHHHHHHHHhHHH
Confidence 676 6799999999999999888865 3 366665444334333 45689999999999764 456888899999
Q ss_pred HHHHHc
Q psy12350 1026 FQQLMQ 1031 (1129)
Q Consensus 1026 ~a~~l~ 1031 (1129)
+|..+.
T Consensus 300 aa~~i~ 305 (311)
T 2q0l_A 300 AALSVI 305 (311)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-21 Score=227.47 Aligned_cols=184 Identities=17% Similarity=0.138 Sum_probs=131.4
Q ss_pred hccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhcc
Q psy12350 835 ENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATR 914 (1129)
Q Consensus 835 ~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~ 914 (1129)
.+|++|.+|+.++.+. ..+++|.+..+..++ .|+++|||||.+|+|+|..+++.|.+||++.+...+..+++++...
T Consensus 192 ATGs~P~~P~~~~~~~--~~~~ts~~~l~l~~l-P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~~D~ei~~~ 268 (542)
T 4b1b_A 192 ATGCRPHIPDDVEGAK--ELSITSDDIFSLKKD-PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRGFDQQCAVK 268 (542)
T ss_dssp CCCEEECCCSSSBTHH--HHCBCHHHHTTCSSC-CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTTSCHHHHHH
T ss_pred ccCCCCCCCCcccCCC--ccccCchhhhccccC-CceEEEECCCHHHHHHHHHHHhcCCeEEEecccccccccchhHHHH
Confidence 3999999997554432 235666666665555 6899999999999999999999999999998754433344433332
Q ss_pred ccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC--c--EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCC
Q psy12350 915 ASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT--G--VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNK 987 (1129)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~--~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~ 987 (1129)
..+.+.. .+|+++.+ +++++.. . |.+.+++++++|.|++|+|++||+..|. +..|+.+++.
T Consensus 269 l~~~l~~------------~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~ 336 (542)
T 4b1b_A 269 VKLYMEE------------QGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKS 336 (542)
T ss_dssp HHHHHHH------------TTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETT
T ss_pred HHHHHHh------------hcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeeccc
Confidence 2222111 14555443 6666432 2 6678899999999999999999998776 3467777765
Q ss_pred cccccccceeecCCCCcEEEcccccc--chhHHHHHHHHHHHHHHcCC
Q psy12350 988 NVQPLYKHTINIEHPTMFILGVPRHT--LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 988 ~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
......+..+.++.||||++||+... ...+.+..|++.++..+.|.
T Consensus 337 ~~~i~vd~~~~Ts~p~IyAiGDv~~~~p~La~~A~~eg~~aa~~i~g~ 384 (542)
T 4b1b_A 337 NNKIIADHLSCTNIPSIFAVGDVAENVPELAPVAIKAGEILARRLFKD 384 (542)
T ss_dssp TTEECCCTTSBCSSTTEEECTTSBTTCCCCHHHHHHHHHHHHHHHHSC
T ss_pred CceEeccccccccCCCeEEeccccCCchhHHHHHHHHHHHHHHHHhcC
Confidence 44323334445699999999999754 35589999999999998874
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-20 Score=211.20 Aligned_cols=272 Identities=14% Similarity=0.139 Sum_probs=171.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcc-----ccccCcccccc-------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVH-----SSMYKSLKTNL------- 807 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~-----~~~y~~~~~~~------- 807 (1129)
.+++|||+|++|+++|..|.+.| ++|+|||+++.+||.|... ++....+..+.. ..+...+....
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (335)
T 2zbw_A 6 TDVLIVGAGPTGLFAGFYVGMRG--LSFRFVDPLPEPGGQLTAL-YPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVY 82 (335)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSCHHHHHT-CTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCCCCCeeecc-CCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 46899999999999999999999 9999999999999999632 222111111100 00000000000
Q ss_pred --cccccccc--C--CCCCCCCCCCCCChhhhhhccC---CCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCC
Q psy12350 808 --PKDLMELC--G--YGHKGNADKSYIGAKDVLENYN---HPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSG 878 (1129)
Q Consensus 808 --~~~~~~~~--~--~~~~~~~~~~~~~~~~v~~~~~---~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G 878 (1129)
......+. + +.........+.....++.+|+ .|+.|+++|.+.|.+.-+|.. +++..++.+|+|+|||+|
T Consensus 83 ~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~-~~~~~~~~~~~v~viG~G 161 (335)
T 2zbw_A 83 SLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYA-VKSKAEFQGKRVLIVGGG 161 (335)
T ss_dssp EESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESS-CSCGGGGTTCEEEEECSS
T ss_pred EeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEe-cCchhhcCCCEEEEECCC
Confidence 00000000 0 0000000001111223334777 688889999887776545433 445556679999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC----cEEe
Q psy12350 879 QSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT----GVRF 952 (1129)
Q Consensus 879 ~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~----~V~~ 952 (1129)
.+|+|+|..|++.+.+|+++.+.+...... ....... +.+. ..+|+++.+ |.+++++ +|.+
T Consensus 162 ~~g~e~a~~l~~~g~~V~~v~~~~~~~~~~-~~~~~l~---------~~l~---~~gv~v~~~~~v~~i~~~~~~~~v~~ 228 (335)
T 2zbw_A 162 DSAVDWALNLLDTARRITLIHRRPQFRAHE-ASVKELM---------KAHE---EGRLEVLTPYELRRVEGDERVRWAVV 228 (335)
T ss_dssp HHHHHHHHHTTTTSSEEEEECSSSSCCSCH-HHHHHHH---------HHHH---TTSSEEETTEEEEEEEESSSEEEEEE
T ss_pred HHHHHHHHHHHhhCCEEEEEEcCCccCccH-HHHHHHH---------hccc---cCCeEEecCCcceeEccCCCeeEEEE
Confidence 999999999999999999999876543221 1111110 0111 126777665 7777654 4777
Q ss_pred c---CC--cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc----chhHHHHHHH
Q psy12350 953 Q---DG--SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT----LLFNLFDLQV 1023 (1129)
Q Consensus 953 ~---dG--~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~----~~~~~~e~qa 1023 (1129)
. +| +++++|.||+|||++++.+++.. +++.+++.++ .+.. .+.++.||||++|++... .....+..||
T Consensus 229 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~-~~~~~~~g~i-~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g 305 (335)
T 2zbw_A 229 FHNQTQEELALEVDAVLILAGYITKLGPLAN-WGLALEKNKI-KVDT-TMATSIPGVYACGDIVTYPGKLPLIVLGFGEA 305 (335)
T ss_dssp EETTTCCEEEEECSEEEECCCEEEECGGGGG-SCCCEETTEE-ECCT-TCBCSSTTEEECSTTEECTTCCCCHHHHHHHH
T ss_pred EECCCCceEEEecCEEEEeecCCCCchHhhh-cceeccCCee-eeCC-CCCCCCCCEEEeccccccCcchhhhhhhHHHH
Confidence 6 78 56899999999999999888765 6676664332 3333 345689999999998642 3456777888
Q ss_pred HHHHHHHc
Q psy12350 1024 RLFQQLMQ 1031 (1129)
Q Consensus 1024 ~~~a~~l~ 1031 (1129)
+.+|+.+.
T Consensus 306 ~~aa~~i~ 313 (335)
T 2zbw_A 306 AIAANHAA 313 (335)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877664
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-20 Score=216.86 Aligned_cols=276 Identities=13% Similarity=0.114 Sum_probs=170.3
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc---cCCCCCCCC-CCCCccccccCcccccc--ccccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL---YTEHIGCDQ-YGLPVHSSMYKSLKTNL--PKDLMEL 814 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~---~~~~~g~~~-~g~p~~~~~y~~~~~~~--~~~~~~~ 814 (1129)
+++|||+|++|+++|..|++.|...+|+++|+++..+..-. ..-..+... ..+......|....... .......
T Consensus 4 ~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i 83 (410)
T 3ef6_A 4 HVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTAL 83 (410)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEEE
T ss_pred CEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEEE
Confidence 68999999999999999999995455999999887653100 000000000 00000000000000000 0000000
Q ss_pred c--CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCC-----CCCCCCeEEEEcCCccHHHHHHH
Q psy12350 815 C--GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTP-----EPFAGKQAVVVGSGQSGLDITLD 887 (1129)
Q Consensus 815 ~--~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~-----~~~~gk~VvVVG~G~Sg~eiA~~ 887 (1129)
. ...+.......+.....++.+|+.|+.|++||.+. ..+++...+.+. ....+|+|+|||+|.+|+|+|..
T Consensus 84 d~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~ipG~~~--~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~ 161 (410)
T 3ef6_A 84 DVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQL--PGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATT 161 (410)
T ss_dssp ETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTTTS--TTEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHH
T ss_pred ECCCCEEEECCCCEEECCEEEEccCCcccCCCCCCccc--cceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHH
Confidence 0 00000000112222334455999999999999763 345544333221 11248999999999999999999
Q ss_pred HHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC----cEEecCCcEee
Q psy12350 888 IATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT----GVRFQDGSYEQ 959 (1129)
Q Consensus 888 la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~----~V~~~dG~~~~ 959 (1129)
|++.|.+|+++++.+..++ +.+.+.....+.+. ..+|+++.+ |++++.+ +|+++||++++
T Consensus 162 l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~------------~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~ 229 (410)
T 3ef6_A 162 ARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLT------------ELGVQVELGTGVVGFSGEGQLEQVMASDGRSFV 229 (410)
T ss_dssp HHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHH------------HHTCEEECSCCEEEEECSSSCCEEEETTSCEEE
T ss_pred HHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHH------------HCCCEEEeCCEEEEEeccCcEEEEEECCCCEEE
Confidence 9999999999998776553 22222222211111 115666644 8888765 48999999999
Q ss_pred ccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc----------hhHHHHHHHHHHHHH
Q psy12350 960 VDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL----------LFNLFDLQVRLFQQL 1029 (1129)
Q Consensus 960 ~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~----------~~~~~e~qa~~~a~~ 1029 (1129)
+|.||+|||++|+.+++.. .|+..++ ++ .+..+ +.++.||||++|++.... .++.+..||+.+|+.
T Consensus 230 aD~Vv~a~G~~p~~~l~~~-~gl~~~~-gi-~vd~~-~~t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~ 305 (410)
T 3ef6_A 230 ADSALICVGAEPADQLARQ-AGLACDR-GV-IVDHC-GATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAA 305 (410)
T ss_dssp CSEEEECSCEEECCHHHHH-TTCCBSS-SE-ECCTT-SBCSSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHH
T ss_pred cCEEEEeeCCeecHHHHHh-CCCccCC-eE-EEccC-eeECCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHHHHH
Confidence 9999999999999877654 6777763 32 23222 245899999999986532 268999999999999
Q ss_pred HcCCC
Q psy12350 1030 MQGHI 1034 (1129)
Q Consensus 1030 l~g~~ 1034 (1129)
+.|+.
T Consensus 306 i~g~~ 310 (410)
T 3ef6_A 306 ILGKN 310 (410)
T ss_dssp HTTCC
T ss_pred HcCCC
Confidence 99864
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=6.5e-20 Score=218.52 Aligned_cols=272 Identities=19% Similarity=0.239 Sum_probs=174.7
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCC-------------------CCCCCcccc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCD-------------------QYGLPVHSS 798 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~-------------------~~g~p~~~~ 798 (1129)
...+++|||+|++|+++|..|.+.| .+|+|+|++ .+||+|... ||. .+|++....
T Consensus 19 ~~~dVvIIGgG~aGl~aA~~la~~G--~~V~liE~~-~~GG~~~~~---gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~ 92 (478)
T 3dk9_A 19 ASYDYLVIGGGSGGLASARRAAELG--ARAAVVESH-KLGGTCVNV---GCVPKKVMWNTAVHSEFMHDHADYGFPSCEG 92 (478)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTHHHHHH---SHHHHHHHHHHHHHHHHHTTTTTTTSCCCCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCC--CeEEEEecC-CCCCccccc---CccchHHHHHHHHHHHHHHHHHhcCccCCCC
Confidence 3468999999999999999999999 999999975 799998642 221 112111000
Q ss_pred c--cCccccc-------ccc---ccccccCCCC--------CCC------CCCCCCChhhhhhccCCCCCC---CCCCCC
Q psy12350 799 M--YKSLKTN-------LPK---DLMELCGYGH--------KGN------ADKSYIGAKDVLENYNHPIYP---EFKGKD 849 (1129)
Q Consensus 799 ~--y~~~~~~-------~~~---~~~~~~~~~~--------~~~------~~~~~~~~~~v~~~~~~P~~P---~i~G~~ 849 (1129)
. +..+... ... ....-....+ ... ....+.....++.+|+.|+.| ++||.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~g~~~~~d~lviAtG~~p~~p~~~~i~G~~ 172 (478)
T 3dk9_A 93 KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGAS 172 (478)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEEETTEEEECSCEEECCCEEECCCCTTTSTTGG
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEEECCEEEEeeEEEEccCCCCCCCCcCCCCCCc
Confidence 0 0000000 000 0000000000 000 000112223344499999999 999976
Q ss_pred CCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCcccc
Q psy12350 850 MCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVT 928 (1129)
Q Consensus 850 ~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 928 (1129)
..+++.++...... +|+|+|||+|.+|+|+|..|++.|.+|+++.+.+..++. .+.+.....+.+
T Consensus 173 ----~~~~~~~~~~~~~~-~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l--------- 238 (478)
T 3dk9_A 173 ----LGITSDGFFQLEEL-PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEEL--------- 238 (478)
T ss_dssp ----GSBCHHHHTTCCSC-CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHH---------
T ss_pred ----eeEchHHhhchhhc-CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccccCHHHHHHHHHHH---------
Confidence 34566665554443 799999999999999999999999999999987765432 222222111111
Q ss_pred ccCCCCCeEEcCC--eeEEeC--Cc----EEecC---C----cEeeccEEEEccCccCcCCCCC-CCCCeeecCCccccc
Q psy12350 929 SLCLPNNVVLKPD--VAELTP--TG----VRFQD---G----SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPL 992 (1129)
Q Consensus 929 ~~~~~~~V~~~~~--i~~v~~--~~----V~~~d---G----~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~l 992 (1129)
. ..+|+++.+ +.+++. ++ +.+.| | +++++|.||+|||++|+.++|. +..|+++++++...+
T Consensus 239 ~---~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~v 315 (478)
T 3dk9_A 239 E---NAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIV 315 (478)
T ss_dssp H---HTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCC
T ss_pred H---HCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEee
Confidence 0 126777665 777753 33 55665 2 5689999999999999988663 447788876654444
Q ss_pred ccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 993 YKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 993 y~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
..+ +.++.||||++|++... ...+.+..||+.+|+.+.|.
T Consensus 316 d~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 356 (478)
T 3dk9_A 316 DEF-QNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEY 356 (478)
T ss_dssp CTT-CBCSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHHSC
T ss_pred CCC-cccCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHcCC
Confidence 433 35689999999998844 45688999999999999875
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-19 Score=199.59 Aligned_cols=268 Identities=14% Similarity=0.145 Sum_probs=169.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC----CCCCCCCCCCccccccCcccccccc---cc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE----HIGCDQYGLPVHSSMYKSLKTNLPK---DL 811 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~----~~g~~~~g~p~~~~~y~~~~~~~~~---~~ 811 (1129)
..+++|||+|++|+++|..|.+.| ++|+|+|+ ..+||.|.... +++.. .+. ...+...+.....+ .+
T Consensus 16 ~~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~-~~~gg~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~v~~ 89 (319)
T 3cty_A 16 DFDVVIVGAGAAGFSAAVYAARSG--FSVAILDK-AVAGGLTAEAPLVENYLGFK--SIV-GSELAKLFADHAANYAKIR 89 (319)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEES-SSTTGGGGGCSCBCCBTTBS--SBC-HHHHHHHHHHHHHTTSEEE
T ss_pred CCcEEEECcCHHHHHHHHHHHhCC--CcEEEEeC-CCCCccccccchhhhcCCCc--ccC-HHHHHHHHHHHHHHcCCEE
Confidence 357899999999999999999999 99999999 57899887431 12110 000 00000000000000 00
Q ss_pred c--cccCCCCCCC------CCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHH
Q psy12350 812 M--ELCGYGHKGN------ADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLD 883 (1129)
Q Consensus 812 ~--~~~~~~~~~~------~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~e 883 (1129)
. .......... ....+.....++.+|+.|+.|++||.+.|.+..+|.....+...+.+|+|+|||+|.+|+|
T Consensus 90 ~~~~v~~i~~~~~~~~v~~~~~~~~~~~li~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e 169 (319)
T 3cty_A 90 EGVEVRSIKKTQGGFDIETNDDTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAI 169 (319)
T ss_dssp ETCCEEEEEEETTEEEEEESSSEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGGGGBTSEEEEECCSHHHHH
T ss_pred EEeeEEEEEEeCCEEEEEECCCEEEeCEEEECCCCCcccCCCCChHHhCCceEEEEEecchhhcCCCeEEEECCCHHHHH
Confidence 0 0000000000 0001111222333888999999999887766556654433333456899999999999999
Q ss_pred HHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----cEEec---
Q psy12350 884 ITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----GVRFQ--- 953 (1129)
Q Consensus 884 iA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~~~--- 953 (1129)
+|..|++.+++|+++.+.+.... ...+.+.+ . ..+|++..+ +.++..+ +|++.
T Consensus 170 ~a~~l~~~g~~V~~i~~~~~~~~-~~~l~~~l-------------~---~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~ 232 (319)
T 3cty_A 170 AAISMSEYVKNVTIIEYMPKYMC-ENAYVQEI-------------K---KRNIPYIMNAQVTEIVGDGKKVTGVKYKDRT 232 (319)
T ss_dssp HHHHHTTTBSEEEEECSSSSCCS-CHHHHHHH-------------H---HTTCCEECSEEEEEEEESSSSEEEEEEEETT
T ss_pred HHHHHHhhCCcEEEEEcCCccCC-CHHHHHHH-------------h---cCCcEEEcCCeEEEEecCCceEEEEEEEEcC
Confidence 99999999999999987654321 11111111 0 125555544 7777543 36675
Q ss_pred CCc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc--chhHHHHHHHHHHHHH
Q psy12350 954 DGS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT--LLFNLFDLQVRLFQQL 1029 (1129)
Q Consensus 954 dG~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~~a~~ 1029 (1129)
+|+ ++++|.||+|||++|+.+++.. .|+++++++...+..+ +.++.||||++|++... .....+..||+.+|..
T Consensus 233 ~g~~~~i~~D~vi~a~G~~p~~~~l~~-~gl~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~ 310 (319)
T 3cty_A 233 TGEEKLIETDGVFIYVGLIPQTSFLKD-SGVKLDERGYIVVDSR-QRTSVPGVYAAGDVTSGNFAQIASAVGDGCKAALS 310 (319)
T ss_dssp TCCEEEECCSEEEECCCEEECCGGGTT-SCCCBCTTSCBCCCTT-CBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHH
T ss_pred CCceEEEecCEEEEeeCCccChHHHhh-ccccccCCccEeCCCC-CccCCCCEEEeecccCcchhhHHHHHHHHHHHHHH
Confidence 676 5799999999999999888864 6777766544444444 45789999999999764 3567888888888876
Q ss_pred Hc
Q psy12350 1030 MQ 1031 (1129)
Q Consensus 1030 l~ 1031 (1129)
+.
T Consensus 311 i~ 312 (319)
T 3cty_A 311 LY 312 (319)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-19 Score=211.82 Aligned_cols=265 Identities=11% Similarity=0.096 Sum_probs=169.5
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc----ccccCCCCCCCCCCCCccccccCccccccccccccc--
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG----TWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMEL-- 814 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG----~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~-- 814 (1129)
+++|||+|++|+++|..|++.++..+|+|||+++.+|. .+.+.. +. .+ ....+.......+..+
T Consensus 4 ~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~--~~----~~----~~~~~~~~~~~~~~~~gi 73 (452)
T 3oc4_A 4 KIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFN--HT----IN----ELHEARYITEEELRRQKI 73 (452)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC--------------------------CCCCHHHHHHTTE
T ss_pred CEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhc--CC----CC----CHHHhhcCCHHHHHHCCC
Confidence 67999999999999999999944499999999998872 221100 00 00 0000000000000000
Q ss_pred ---cC-----CCCCCC--------CCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCC-----CCCeEE
Q psy12350 815 ---CG-----YGHKGN--------ADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPF-----AGKQAV 873 (1129)
Q Consensus 815 ---~~-----~~~~~~--------~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~-----~gk~Vv 873 (1129)
.. ...... ....+.....++.+|+.|..|++||.+. ..++++..+.+...+ .+|+|+
T Consensus 74 ~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~vv 151 (452)
T 3oc4_A 74 QLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQT--EKLLKYKFLSGALAAVPLLENSQTVA 151 (452)
T ss_dssp EEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCCBTTTC--TTEEEGGGCC----CCHHHHTCSEEE
T ss_pred EEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCCCCCCC--CCEEEeCCHHHHHHHHHHHhcCCEEE
Confidence 00 000000 0001112233444999999999999874 457787777665443 579999
Q ss_pred EEcCCccHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEe--C
Q psy12350 874 VVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELT--P 947 (1129)
Q Consensus 874 VVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~--~ 947 (1129)
|||+|.+|+|+|..+++.|.+|+++++.+..++ +.+.+.....+.+. ..+|++..+ |++++ +
T Consensus 152 ViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~------------~~GV~i~~~~~v~~i~~~~ 219 (452)
T 3oc4_A 152 VIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLE------------KQAVIFHFEETVLGIEETA 219 (452)
T ss_dssp EECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHH------------TTTEEEEETCCEEEEEECS
T ss_pred EECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHH------------HcCCEEEeCCEEEEEEccC
Confidence 999999999999999999999999998776654 23332222221111 125666643 88886 3
Q ss_pred Cc--EEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----------c
Q psy12350 948 TG--VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----------L 1014 (1129)
Q Consensus 948 ~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----------~ 1014 (1129)
++ |.+++| ++++|.||+|||++|+.+++.. . +.+++++...+..+ +.++.||||++|++... .
T Consensus 220 ~~v~v~~~~g-~i~aD~Vv~A~G~~p~~~~l~~-~-~~~~~~g~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~~~~~~ 295 (452)
T 3oc4_A 220 NGIVLETSEQ-EISCDSGIFALNLHPQLAYLDK-K-IQRNLDQTIAVDAY-LQTSVPNVFAIGDCISVMNEPVAETFYAP 295 (452)
T ss_dssp SCEEEEESSC-EEEESEEEECSCCBCCCSSCCT-T-SCBCTTSCBCCCTT-CBCSSTTEEECGGGBCEEEGGGTEEECCC
T ss_pred CeEEEEECCC-EEEeCEEEECcCCCCChHHHHh-h-hccCCCCCEEECcC-ccCCCCCEEEEEeeEEeccccCCceeecc
Confidence 33 566666 8999999999999999988864 2 56655544334333 44689999999998753 2
Q ss_pred hhHHHHHHHHHHHHHHcCC
Q psy12350 1015 LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1015 ~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.++.+..||+.+|+.+.|.
T Consensus 296 ~~~~A~~~g~~aa~~i~g~ 314 (452)
T 3oc4_A 296 LVNNAVRTGLVVANNLEEK 314 (452)
T ss_dssp CHHHHHHHHHHHTTSSSSC
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 5688999999999998875
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-20 Score=232.73 Aligned_cols=258 Identities=13% Similarity=0.074 Sum_probs=173.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+|||||+|||+||..|++ .|++|+|||+++.+||+|.+. ..++
T Consensus 390 ~~~~VvIIGgG~AGl~aA~~La~--~G~~V~liE~~~~~GG~~~~~--------------~~~p---------------- 437 (690)
T 3k30_A 390 SDARVLVVGAGPSGLEAARALGV--RGYDVVLAEAGRDLGGRVTQE--------------SALP---------------- 437 (690)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSSSCTHHHHH--------------HTST----------------
T ss_pred ccceEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCEeeec--------------cCCC----------------
Confidence 45899999999999999999999 569999999999999998741 0000
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhc-CCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNF-NLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
.+....++.+|+..+.+++ ++ .++++++|+.- ......|| +||+
T Consensus 438 --------~~~~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~~--------------------~~~~~~~d-----~lvl 482 (690)
T 3k30_A 438 --------GLSAWGRVKEYREAVLAELPNV--EIYRESPMTGD--------------------DIVEFGFE-----HVIT 482 (690)
T ss_dssp --------TCGGGGHHHHHHHHHHHTCTTE--EEESSCCCCHH--------------------HHHHTTCC-----EEEE
T ss_pred --------chhHHHHHHHHHHHHHHHcCCC--EEEECCeecHH--------------------HHhhcCCC-----EEEE
Confidence 1123346888888888876 55 67777665321 11223588 9999
Q ss_pred ecccCCC------CCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccc
Q psy12350 167 MQGHVTL------PSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCS 240 (1129)
Q Consensus 167 AtG~~~~------p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 240 (1129)
|||.... |..|++||.....+ .....+ ...
T Consensus 483 AtG~~~~~~~~~~~~~~~i~G~~~~~v-----------------~~~~~~---------------------------l~~ 518 (690)
T 3k30_A 483 ATGATWRTDGVARFHTTALPIAEGMQV-----------------LGPDDL---------------------------FAG 518 (690)
T ss_dssp CCCEEECSSCCSSSCSSCCCBCTTSEE-----------------ECHHHH---------------------------HTT
T ss_pred cCCCccccccccccCCCCCCCCCCCcE-----------------EcHHHH---------------------------hCC
Confidence 9994322 45666655211000 000000 000
Q ss_pred cccccccccceeEeeceeeeecCCCC--CCCCcccchhhhcccccEEEEccccCCcccccC---------------CCCe
Q psy12350 241 EDFTEFRKDKYKIINEKAFVRDPGAA--NGPSGLDITHDISTEATTVFLSHHSEHVKKLRF---------------PNNV 303 (1129)
Q Consensus 241 ~~~~~~~~~~~~vi~~~~~v~~~~vG--gG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~---------------~~~i 303 (1129)
....+++++| || +|.+|+|+|..|++.+.+|+++++.+.+.+... .-++
T Consensus 519 ---~~~~g~~VvV-----------iG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i 584 (690)
T 3k30_A 519 ---RLPDGKKVVV-----------YDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVAR 584 (690)
T ss_dssp ---CCCSSSEEEE-----------EECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEE
T ss_pred ---CCCCCCEEEE-----------EcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEE
Confidence 0112344444 78 999999999999999999999999887654321 1146
Q ss_pred EEcCCceEEcCCceEEc-----CCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 304 VKKPDIAELTPTGVRFQ-----DGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 304 ~~~~~v~~~~~~~v~~~-----dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
..++.|++++++++.+. +++++++|.||+|+|++++..++.. + ... .. .++.|++|.+|...
T Consensus 585 ~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~-l--~~~------~~----~t~~~~VyaiGD~~ 651 (690)
T 3k30_A 585 VTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPREELYLD-L--VAR------RD----AGEIASVRGIGDAW 651 (690)
T ss_dssp EESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEECCHHHHH-H--HHH------HH----HTSCSEEEECGGGT
T ss_pred EcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCChHHHHH-H--hhh------hc----ccCCCCEEEEeCCC
Confidence 66778999988876553 4557899999999999999776542 1 110 00 35788999999875
Q ss_pred ccc-ccccccceeeehhhcccccccc
Q psy12350 379 RYP-FLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 379 ~~~-~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
..+ +.....||+.+|.++.+.+.+.
T Consensus 652 ~~~~~~~A~~~g~~aa~~i~~~l~g~ 677 (690)
T 3k30_A 652 APGTIAAAVWSGRRAAEEFDAVLPSN 677 (690)
T ss_dssp SCBCHHHHHHHHHHHHHHTTCCCCCT
T ss_pred chhhHHHHHHHHHHHHHHHHhhccCC
Confidence 432 2334588888899888776654
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5e-20 Score=219.23 Aligned_cols=273 Identities=18% Similarity=0.235 Sum_probs=176.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC---------------------CCCCccc-
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ---------------------YGLPVHS- 797 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~---------------------~g~p~~~- 797 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+|+++.+||+|... ||.+ +|++...
T Consensus 7 ~dvvIIGgG~aGl~aA~~l~~~g--~~V~liE~~~~~GG~~~~~---g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~ 81 (474)
T 1zmd_A 7 ADVTVIGSGPGGYVAAIKAAQLG--FKTVCIEKNETLGGTCLNV---GCIPSKALLNNSHYYHMAHGTDFASRGIEMSEV 81 (474)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSSSSHHHHHH---SHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCE
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCcCCccccc---CccchHHHHHHHHHHHHhhhhhHhhCccccCCC
Confidence 46899999999999999999999 9999999998999999742 2200 0111000
Q ss_pred -cccCccccc-------cc---cccccccCCCC--------CCC-------C-C-CCCCChhhhhhccCCCCCCCCCCCC
Q psy12350 798 -SMYKSLKTN-------LP---KDLMELCGYGH--------KGN-------A-D-KSYIGAKDVLENYNHPIYPEFKGKD 849 (1129)
Q Consensus 798 -~~y~~~~~~-------~~---~~~~~~~~~~~--------~~~-------~-~-~~~~~~~~v~~~~~~P~~P~i~G~~ 849 (1129)
..+..+... .. .....-.+..+ ... . . ..+....-++.+|+.|+.|+++|++
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i~g~~ 161 (474)
T 1zmd_A 82 RLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITID 161 (474)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCTTCCCC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCCCCCC
Confidence 000000000 00 00000000000 000 0 0 0111122233499999999999976
Q ss_pred CCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccc
Q psy12350 850 MCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERV 927 (1129)
Q Consensus 850 ~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 927 (1129)
. ..++|+.++..... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++ +.+.+.....+.+
T Consensus 162 ~--~~v~t~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l-------- 230 (474)
T 1zmd_A 162 E--DTIVSSTGALSLKK-VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRIL-------- 230 (474)
T ss_dssp S--SSEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHH--------
T ss_pred c--CcEEcHHHHhhccc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHH--------
Confidence 4 24788877765544 379999999999999999999999999999998776554 2222222111111
Q ss_pred cccCCCCCeEEcCC--eeEEeCC--c-EEe-------cCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCccccccc
Q psy12350 928 TSLCLPNNVVLKPD--VAELTPT--G-VRF-------QDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYK 994 (1129)
Q Consensus 928 ~~~~~~~~V~~~~~--i~~v~~~--~-V~~-------~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~ 994 (1129)
. ..+|+++.+ |.+++.+ + +.+ .+|+++++|.||+|+|++|+.++|. +.+|+++++++...+..
T Consensus 231 -~---~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~ 306 (474)
T 1zmd_A 231 -Q---KQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNT 306 (474)
T ss_dssp -H---HTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCT
T ss_pred -H---HCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECc
Confidence 0 125666654 7777643 2 433 3567899999999999999988753 33577776554334444
Q ss_pred ceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 995 HTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 995 ~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+ +.++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 307 ~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 345 (474)
T 1zmd_A 307 R-FQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGG 345 (474)
T ss_dssp T-CBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred C-CccCCCCEEEeeecCCCCccHHHHHHHHHHHHHHhcCC
Confidence 3 34689999999999765 35689999999999999885
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.7e-20 Score=217.93 Aligned_cols=269 Identities=15% Similarity=0.194 Sum_probs=174.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCcccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPVHSS-- 798 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~~~~-- 798 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+|+ +.+||+|.. .||-+ ||++....
T Consensus 6 ~DVvVIGaG~aGl~aA~~la~~G--~~V~liEk-~~~GG~~~~---~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (463)
T 4dna_A 6 YDLFVIGGGSGGVRSGRLAAALG--KKVAIAEE-FRYGGTCVI---RGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRF 79 (463)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--CCEEEEES-SCTTHHHHH---HSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEE
T ss_pred CcEEEECcCHHHHHHHHHHHhCC--CEEEEEeC-CCCCCcccc---cCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence 47899999999999999999999 99999999 789999873 23210 01100000
Q ss_pred ccCcccc-------cccccc---ccccCCCC--------CCC------CCCCCCChhhhhhccCCCC-CCCCCCCCCCCC
Q psy12350 799 MYKSLKT-------NLPKDL---MELCGYGH--------KGN------ADKSYIGAKDVLENYNHPI-YPEFKGKDMCQI 853 (1129)
Q Consensus 799 ~y~~~~~-------~~~~~~---~~~~~~~~--------~~~------~~~~~~~~~~v~~~~~~P~-~P~i~G~~~f~g 853 (1129)
.|..+.. ...... ..-....+ ... ....+.....++.+|+.|. +|++||.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~--- 156 (463)
T 4dna_A 80 DWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHEL--- 156 (463)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTTEEEEEEEEEECCCEEECCCTTSTTGGG---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEecCCeEEEeCEEEEecCCCcccCCCCCCccc---
Confidence 0000000 000000 00000000 000 0001111222334899999 999999762
Q ss_pred cEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCC
Q psy12350 854 PILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCL 932 (1129)
Q Consensus 854 ~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1129)
++++.++..... .+|+|+|||+|.+|+|+|..+++.|.+|+++++.+..++. .+.+.....+.+ .
T Consensus 157 -~~~~~~~~~~~~-~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l---------~--- 222 (463)
T 4dna_A 157 -CITSNEAFDLPA-LPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAM---------E--- 222 (463)
T ss_dssp -CBCHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHH---------H---
T ss_pred -cccHHHHhhhhc-CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH---------H---
Confidence 445555544333 3899999999999999999999999999999987655432 222221111111 0
Q ss_pred CCCeEEcCC--eeEEeCC-----cEE-ecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCC
Q psy12350 933 PNNVVLKPD--VAELTPT-----GVR-FQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPT 1003 (1129)
Q Consensus 933 ~~~V~~~~~--i~~v~~~-----~V~-~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~ 1003 (1129)
..+|+++.+ |.+++.+ .|. +.||+ +++|.||+|||++|+.++|. +..|+++++++...+..+ +.++.||
T Consensus 223 ~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~ 300 (463)
T 4dna_A 223 EKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAF-SRTSTPG 300 (463)
T ss_dssp HTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTT-CBCSSTT
T ss_pred HCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcC-CCCCCCC
Confidence 125666654 7787643 367 78898 99999999999999988863 447888877654444443 3478999
Q ss_pred cEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1004 MFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1004 l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
||++|++... ...+.+..||+.+|+.+.|.
T Consensus 301 iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 331 (463)
T 4dna_A 301 IYALGDVTDRVQLTPVAIHEAMCFIETEYKN 331 (463)
T ss_dssp EEECSGGGSSCCCHHHHHHHHHHHHHHHHSS
T ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHcCC
Confidence 9999998764 35689999999999999874
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-19 Score=214.68 Aligned_cols=185 Identities=22% Similarity=0.188 Sum_probs=136.0
Q ss_pred hhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhh
Q psy12350 833 VLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDI 911 (1129)
Q Consensus 833 v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~ 911 (1129)
++.+|+.|..|+++|.+.. .++++.++.+... .+|+|+|||+|.+|+|+|..+++.|.+|+++++.+..++. .+.+
T Consensus 149 viATGs~p~~p~i~g~~~~--~v~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~ 225 (499)
T 1xdi_A 149 LVATGASPRILPSAQPDGE--RILTWRQLYDLDA-LPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADA 225 (499)
T ss_dssp EECCCEEECCCGGGCCCSS--SEEEGGGGGGCSS-CCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCCSSHHH
T ss_pred EEcCCCCCCCCCCCCCCcC--cEEehhHhhhhhc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHH
Confidence 4449999999999998642 3777777665443 4799999999999999999999999999999987765542 2222
Q ss_pred hccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc----EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeee
Q psy12350 912 ATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG----VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKV 984 (1129)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~----V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~ 984 (1129)
.....+.+ . ..+|+++.+ |++++.++ |.+.||+++++|.||+|+|++|+.++|. +.+|+++
T Consensus 226 ~~~l~~~l---------~---~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~ 293 (499)
T 1xdi_A 226 ALVLEESF---------A---ERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQL 293 (499)
T ss_dssp HHHHHHHH---------H---HTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCC
T ss_pred HHHHHHHH---------H---HCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceE
Confidence 22111111 0 125666654 78886432 5567888999999999999999988853 4478888
Q ss_pred cCCcccccccceeecCCCCcEEEccccccc-hhHHHHHHHHHHHHHHcCC
Q psy12350 985 VNKNVQPLYKHTINIEHPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 985 ~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~ 1033 (1129)
++++...+... +.++.|+||++|++.... ..+.+..||+.+|..+.|.
T Consensus 294 ~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 342 (499)
T 1xdi_A 294 GRGNYLTVDRV-SRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGE 342 (499)
T ss_dssp BTTTBCCCCSS-SBCSSTTEEECSGGGTSCSCHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCEEECCC-cccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence 76553334333 345899999999997653 4688999999999999986
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-20 Score=220.37 Aligned_cols=296 Identities=14% Similarity=0.175 Sum_probs=166.8
Q ss_pred CCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccC
Q psy12350 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELS 85 (1129)
Q Consensus 6 ~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~ 85 (1129)
++..++|+|||||+||++||+.|++.+.+.+|+|||+++.++... ++....++.....+. .....|.
T Consensus 8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r------------~~lsk~l~~~~~~~~-~~~~~~~ 74 (493)
T 1m6i_A 8 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMR------------PPLSKELWFSDDPNV-TKTLRFK 74 (493)
T ss_dssp CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCS------------GGGGTGGGCC--CTH-HHHCEEE
T ss_pred CCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCC------------CCCCHHhhcCCccch-hhccccc
Confidence 345689999999999999999999876789999999987654110 000011111100000 0011122
Q ss_pred CCCCCC-----CCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEeccee
Q psy12350 86 GYHHKG-----HPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQV 160 (1129)
Q Consensus 86 d~~~~~-----~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 160 (1129)
+++... .+...+....++.+ ..+.++ .++++++|+.++. +.+.+.+. + ...+.||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~gv--~~~~g~~v~~id~-----~~~~V~~~---~--g~~i~yd--- 134 (493)
T 1m6i_A 75 QWNGKERSIYFQPPSFYVSAQDLPH-----IENGGV--AVLTGKKVVQLDV-----RDNMVKLN---D--GSQITYE--- 134 (493)
T ss_dssp CTTSCEEESBSSCGGGSBCTTTTTT-----STTCEE--EEEETCCEEEEEG-----GGTEEEET---T--SCEEEEE---
T ss_pred ccccccccccccchHhhcchhhhhh-----hhcCCe--EEEcCCEEEEEEC-----CCCEEEEC---C--CCEEECC---
Confidence 221100 00000111111100 112333 7788899998876 23444332 2 2457799
Q ss_pred eeEEEEecccCCCCCccccccchhhh-cccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccc
Q psy12350 161 RFFLQLMQGHVTLPSKAEMLADTEQD-VRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARC 239 (1129)
Q Consensus 161 ~~~lvvAtG~~~~p~~p~i~g~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 239 (1129)
+|||||| +.|..|++++..... ..+ .+. ++.
T Consensus 135 --~lviATG--s~p~~~~~~~~~~~~~~~~---------------v~~-----------------------------~~~ 166 (493)
T 1m6i_A 135 --KCLIATG--GTPRSLSAIDRAGAEVKSR---------------TTL-----------------------------FRK 166 (493)
T ss_dssp --EEEECCC--EEECCCHHHHTSCHHHHHT---------------EEE-----------------------------CCS
T ss_pred --EEEECCC--CCCCCCCCcccccccccCc---------------eEE-----------------------------EcC
Confidence 9999999 778877765421000 000 000 011
Q ss_pred cccccc-----ccccceeEeeceeeeecCCCCCCCCcccchhhhcc----cccEEEEccccCCcccccCC----------
Q psy12350 240 SEDFTE-----FRKDKYKIINEKAFVRDPGAANGPSGLDITHDIST----EATTVFLSHHSEHVKKLRFP---------- 300 (1129)
Q Consensus 240 ~~~~~~-----~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~----~~~~V~lv~r~~~~~~~~~~---------- 300 (1129)
.+++.. ...++++| ||||++|+|+|..|++ .+.+|+++++.+.++...++
T Consensus 167 ~~d~~~l~~~~~~~~~vvV-----------iGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~ 235 (493)
T 1m6i_A 167 IGDFRSLEKISREVKSITI-----------IGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEK 235 (493)
T ss_dssp HHHHHHHHHHHHHCSEEEE-----------ECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCeEEE-----------ECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHH
Confidence 111100 01233433 8999999999999887 46789999887644332221
Q ss_pred -----CCeEEcCCceEEcC--C--ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeec-Cc--ccccccccccCCC
Q psy12350 301 -----NNVVKKPDIAELTP--T--GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVN-KN--VQPLYKHLINIEH 368 (1129)
Q Consensus 301 -----~~i~~~~~v~~~~~--~--~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~-~~--~~~l~~~~~~~~~ 368 (1129)
-++..++.|+++++ + .|.++||+++++|.||+|+|++++.++++ ..++.+++ ++ .++-+.+. .
T Consensus 236 l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~-~~gl~~~~~~ggi~Vd~~l~t----~ 310 (493)
T 1m6i_A 236 VRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAK-TGGLEIDSDFGGFRVNAELQA----R 310 (493)
T ss_dssp HHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTTHH-HHTCCBCTTTCSEECCTTCEE----E
T ss_pred HHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHHHH-HcCCccccCCCcEEECCCccc----C
Confidence 14556778888863 2 37788999999999999999999988875 23444443 11 22223222 4
Q ss_pred CCeEEecccccccc-----------cccccceeeehhhccc
Q psy12350 369 PSMCIIGYTYRYPF-----------LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 369 p~l~~~G~~~~~~~-----------~~~~~~~~~~a~~~~~ 398 (1129)
|++|++|.....+. ..+..|++.+|.++.+
T Consensus 311 ~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g 351 (493)
T 1m6i_A 311 SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTG 351 (493)
T ss_dssp TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTS
T ss_pred CCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhcC
Confidence 78999887754211 0223666666666553
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.5e-19 Score=199.39 Aligned_cols=280 Identities=14% Similarity=0.081 Sum_probs=169.7
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcc----cCCcCcccccCCCCCCCCCCCCc--c-ccccCcccccccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQ----ADNIGGTWLYTEHIGCDQYGLPV--H-SSMYKSLKTNLPKDL 811 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~----~~~~GG~w~~~~~~g~~~~g~p~--~-~~~y~~~~~~~~~~~ 811 (1129)
..+++|||+|++|+++|..|.+.| ++|+|||+ ...+||.|.........+ +.|. . ..+...+.....+.-
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g 84 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAE--LKPLLFEGWMANDIAPGGQLTTTTDVENFP-GFPEGILGVELTDKFRKQSERFG 84 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCSSBTTBCTTCGGGGCSEECCST-TCTTCEEHHHHHHHHHHHHHHTT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeccCccccCCCceeeeccccccCC-CCccCCCHHHHHHHHHHHHHHCC
Confidence 357899999999999999999999 99999999 667899887532110000 0100 0 000000000000000
Q ss_pred ccc-cC----CCCCCC-C-----CCCCCChhhhhhccCCCCCCCCCCCCC----CCCcEEeeccCCCCCC--CCCCeEEE
Q psy12350 812 MEL-CG----YGHKGN-A-----DKSYIGAKDVLENYNHPIYPEFKGKDM----CQIPILHSRDYRTPEP--FAGKQAVV 874 (1129)
Q Consensus 812 ~~~-~~----~~~~~~-~-----~~~~~~~~~v~~~~~~P~~P~i~G~~~----f~g~~~hs~~~~~~~~--~~gk~VvV 874 (1129)
..+ .+ ...... + ...+.....++.+|+.|..|++||.+. |.+..+|+..+.+... ..+|+|+|
T Consensus 85 v~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~vv~A~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V 164 (333)
T 1vdc_A 85 TTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAV 164 (333)
T ss_dssp CEEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCCCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEE
T ss_pred CEEEEeEEEEEEEcCCEEEEEECCcEEEcCEEEECCCCCcCCCCCCCccccccccccCcEEEeccCccchhhcCCCeEEE
Confidence 000 00 000000 0 001111122233899999999999876 6666677655433332 57899999
Q ss_pred EcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc---
Q psy12350 875 VGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG--- 949 (1129)
Q Consensus 875 VG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~--- 949 (1129)
||+|.+|+|+|..|++.+.+|+++.+.+.... ...+.. ..+ ...+|++..+ +.++.+++
T Consensus 165 vG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~-~~~~~~------------~~~---~~~gv~i~~~~~v~~i~~~~~~~ 228 (333)
T 1vdc_A 165 IGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA-SKIMQQ------------RAL---SNPKIDVIWNSSVVEAYGDGERD 228 (333)
T ss_dssp ECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS-CHHHHH------------HHH---TCTTEEEECSEEEEEEEESSSSS
T ss_pred ECCChHHHHHHHHHHhcCCeEEEEecCCcCCc-cHHHHH------------HHH---hCCCeeEecCCceEEEeCCCCcc
Confidence 99999999999999999999999988654311 000000 000 1236777654 77776432
Q ss_pred ----EEec---CC--cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc--chhHH
Q psy12350 950 ----VRFQ---DG--SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT--LLFNL 1018 (1129)
Q Consensus 950 ----V~~~---dG--~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~ 1018 (1129)
|++. +| +++++|.||+|||++|+.+++. .++.+++++...+..+.+.++.||||++|++... .....
T Consensus 229 ~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~--~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~ 306 (333)
T 1vdc_A 229 VLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLD--GGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAIT 306 (333)
T ss_dssp SEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGT--TSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCCCHHH
T ss_pred ceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhh--ccccccCCCCEEechhhcccCCCCEEEeeeccCCCchhHHH
Confidence 7775 46 4689999999999999988876 3566665554455555556789999999998754 34566
Q ss_pred HHHHHHHHHHHH----cCCCCCCCH
Q psy12350 1019 FDLQVRLFQQLM----QGHITLPSK 1039 (1129)
Q Consensus 1019 ~e~qa~~~a~~l----~g~~~lp~~ 1039 (1129)
+..||+.+|..+ .++..+|.+
T Consensus 307 A~~~g~~aa~~i~~~l~~~~~~~~~ 331 (333)
T 1vdc_A 307 AAGTGCMAALDAEHYLQEIGSQEGK 331 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHC------
T ss_pred HHHhHHHHHHHHHHHHHhccccccC
Confidence 777777766644 444444443
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-20 Score=212.32 Aligned_cols=263 Identities=15% Similarity=0.224 Sum_probs=168.1
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC----CCCCCCCCCCccccccCcccc-----cc--
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE----HIGCDQYGLPVHSSMYKSLKT-----NL-- 807 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~----~~g~~~~g~p~~~~~y~~~~~-----~~-- 807 (1129)
..+++|||+|++|+.+|..|++.| +|+|+|+++..+ |.... ..+. ++ ...+...... +.
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~~g---~V~lie~~~~~~--~~~~~l~~~~~g~----~~-~~~~~~~~~~~~~~~~v~~ 77 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQTY---EVTVIDKEPVPY--YSKPMLSHYIAGF----IP-RNRLFPYSLDWYRKRGIEI 77 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTTS---EEEEECSSSSCC--CCSTTHHHHHTTS----SC-GGGGCSSCHHHHHHHTEEE
T ss_pred CCcEEEECCcHHHHHHHHHHhhcC---CEEEEECCCCCc--cccchhHHHHhCC----CC-HHHhccCCHHHHHhCCcEE
Confidence 457899999999999999998877 899999987542 11000 0000 00 0000000000 00
Q ss_pred --cccccccc--CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCC-----CCCeEEEEcCC
Q psy12350 808 --PKDLMELC--GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPF-----AGKQAVVVGSG 878 (1129)
Q Consensus 808 --~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~-----~gk~VvVVG~G 878 (1129)
........ ......+ ...+....-++++|+.|+.|++||.+ .++++.++.+...+ .+|+|+|||+|
T Consensus 78 ~~g~~v~~id~~~~~V~~~-g~~~~~d~lViATGs~p~~p~i~G~~----~v~~~~~~~~~~~l~~~~~~~~~vvViGgG 152 (367)
T 1xhc_A 78 RLAEEAKLIDRGRKVVITE-KGEVPYDTLVLATGARAREPQIKGKE----YLLTLRTIFDADRIKESIENSGEAIIIGGG 152 (367)
T ss_dssp ECSCCEEEEETTTTEEEES-SCEEECSEEEECCCEEECCCCSBTGG----GEECCCSHHHHHHHHHHHHHHSEEEEEECS
T ss_pred EECCEEEEEECCCCEEEEC-CcEEECCEEEECCCCCCCCCCCCCcC----CEEEEcCHHHHHHHHHHhhcCCcEEEECCC
Confidence 00000000 0000000 11122333445599999999999942 46665544333222 46999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCcEEecCCc
Q psy12350 879 QSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTGVRFQDGS 956 (1129)
Q Consensus 879 ~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~V~~~dG~ 956 (1129)
.+|+|+|..|++.|.+|+++++.+..+++.+.+.....+.+ . ..+|++..+ |++++.++|+++||+
T Consensus 153 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~l~~~l---------~---~~gV~i~~~~~v~~i~~~~v~~~~g~ 220 (367)
T 1xhc_A 153 FIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDML---------E---ETGVKFFLNSELLEANEEGVLTNSGF 220 (367)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHH---------H---HTTEEEECSCCEEEECSSEEEETTEE
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCeeccCCHHHHHHHHHHH---------H---HCCCEEEcCCEEEEEEeeEEEECCCE
Confidence 99999999999999999999988766553332222221111 1 126777654 888887789999998
Q ss_pred EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----chhHHHHHHHHHHHHHHc
Q psy12350 957 YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 957 ~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----~~~~~~e~qa~~~a~~l~ 1031 (1129)
+++|.||+|||++|+.++++. .|++.++ ++ .+..+ +.++.||||++|++... ..++.+..||+.+|+.+.
T Consensus 221 -i~~D~vi~a~G~~p~~~ll~~-~gl~~~~-gi-~Vd~~-~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~ 295 (367)
T 1xhc_A 221 -IEGKVKICAIGIVPNVDLARR-SGIHTGR-GI-LIDDN-FRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILK 295 (367)
T ss_dssp -EECSCEEEECCEEECCHHHHH-TTCCBSS-SE-ECCTT-SBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHT
T ss_pred -EEcCEEEECcCCCcCHHHHHh-CCCCCCC-CE-EECCC-cccCCCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhc
Confidence 999999999999999876654 6777653 32 33322 34589999999998632 357899999999999998
Q ss_pred CC
Q psy12350 1032 GH 1033 (1129)
Q Consensus 1032 g~ 1033 (1129)
|.
T Consensus 296 g~ 297 (367)
T 1xhc_A 296 GE 297 (367)
T ss_dssp TC
T ss_pred CC
Confidence 75
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-19 Score=207.53 Aligned_cols=273 Identities=16% Similarity=0.193 Sum_probs=170.1
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccc-----cccCccccc-------
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHS-----SMYKSLKTN------- 806 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~-----~~y~~~~~~------- 806 (1129)
..+++|||+|++|+++|..|.+.| ++|+|||+++.+||.|... ++....+..|... .+...+...
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 90 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGMNN--ISCRIIESMPQLGGQLAAL-YPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPD 90 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHT-CTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCCCCCccccc-CCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCE
Confidence 357899999999999999999999 9999999999999999632 2221111111000 000000000
Q ss_pred --ccccccccc---C--CCCCCCCCCCCCChhhhhhccC---CCCCCCCCC-CCCCCCcEEeeccCCCCCCCCCCeEEEE
Q psy12350 807 --LPKDLMELC---G--YGHKGNADKSYIGAKDVLENYN---HPIYPEFKG-KDMCQIPILHSRDYRTPEPFAGKQAVVV 875 (1129)
Q Consensus 807 --~~~~~~~~~---~--~~~~~~~~~~~~~~~~v~~~~~---~P~~P~i~G-~~~f~g~~~hs~~~~~~~~~~gk~VvVV 875 (1129)
.......+. + +.........+.....++.+|+ .|..|++|| .+.|.+..+|.. +++..++.+|+|+||
T Consensus 91 ~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~-~~~~~~~~~~~vvVv 169 (360)
T 3ab1_A 91 VVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA-VKSVEDFKGKRVVIV 169 (360)
T ss_dssp EECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESS-CSCGGGGTTCEEEEE
T ss_pred EEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEe-cCCHHHcCCCcEEEE
Confidence 000000000 0 0000000001111122333777 688888999 877777545533 455556789999999
Q ss_pred cCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----
Q psy12350 876 GSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT----- 948 (1129)
Q Consensus 876 G~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~----- 948 (1129)
|+|.+|+|+|..|++.+.+|+++.+.+...... .+..... +... ..+|++..+ |.+++.+
T Consensus 170 G~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~-~~~~~l~---------~~~~---~~gv~i~~~~~v~~i~~~~~~v~ 236 (360)
T 3ab1_A 170 GGGDSALDWTVGLIKNAASVTLVHRGHEFQGHG-KTAHEVE---------RARA---NGTIDVYLETEVASIEESNGVLT 236 (360)
T ss_dssp CSSHHHHHHHHHTTTTSSEEEEECSSSSCSSCS-HHHHSSH---------HHHH---HTSEEEESSEEEEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCCH-HHHHHHH---------HHhh---cCceEEEcCcCHHHhccCCCceE
Confidence 999999999999999999999998865433221 1111110 0000 125777665 7777643
Q ss_pred cEEec--CC--cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc----chhHHHH
Q psy12350 949 GVRFQ--DG--SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT----LLFNLFD 1020 (1129)
Q Consensus 949 ~V~~~--dG--~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~----~~~~~~e 1020 (1129)
+|.+. +| +++++|.||+|||++++.+++.. +++.+++.++ .+.. .+.++.||||++|++... .....+.
T Consensus 237 ~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~-~~~~~~~g~i-~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~ 313 (360)
T 3ab1_A 237 RVHLRSSDGSKWTVEADRLLILIGFKSNLGPLAR-WDLELYENAL-VVDS-HMKTSVDGLYAAGDIAYYPGKLKIIQTGL 313 (360)
T ss_dssp EEEEEETTCCEEEEECSEEEECCCBCCSCGGGGG-SSCCEETTEE-ECCT-TSBCSSTTEEECSTTEECTTCCCSHHHHH
T ss_pred EEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHh-hccccccCee-eecC-CCcCCCCCEEEecCccCCCCccceeehhH
Confidence 46775 78 46899999999999999888765 6666664333 3333 234589999999998742 3457777
Q ss_pred HHHHHHHHHHc
Q psy12350 1021 LQVRLFQQLMQ 1031 (1129)
Q Consensus 1021 ~qa~~~a~~l~ 1031 (1129)
.||+.+|+.+.
T Consensus 314 ~~g~~aa~~i~ 324 (360)
T 3ab1_A 314 SEATMAVRHSL 324 (360)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887665
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-19 Score=218.68 Aligned_cols=270 Identities=13% Similarity=0.129 Sum_probs=178.1
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccc-----------------cC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSM-----------------YK 801 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~-----------------y~ 801 (1129)
..+++|||+|++|+++|.+|++.| .+|+|+|+++.+||+|.+. ||- |.+... |.
T Consensus 43 ~~dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~GG~~~~~---g~~----p~k~l~~~~~~~~~~~~~~~~g~~~ 113 (523)
T 1mo9_A 43 EYDAIFIGGGAAGRFGSAYLRAMG--GRQLIVDRWPFLGGSCPHN---ACV----PHHLFSDCAAELMLARTFSGQYWFP 113 (523)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSCHHHHH---SHH----HHHHHHHHHHHHHHHHHTTTSTTCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCccccc---CcC----chHHHHHHHHHHHHHhhhhhcCcHH
Confidence 457899999999999999999999 9999999998899998742 220 100000 11
Q ss_pred ccccc----------cc---c---ccc-----cccCCCCC-CCCC------------CCCCChhhhhhccCCCCCCCCCC
Q psy12350 802 SLKTN----------LP---K---DLM-----ELCGYGHK-GNAD------------KSYIGAKDVLENYNHPIYPEFKG 847 (1129)
Q Consensus 802 ~~~~~----------~~---~---~~~-----~~~~~~~~-~~~~------------~~~~~~~~v~~~~~~P~~P~i~G 847 (1129)
.+... .. . ... .-.+..+- .... ..+.....++.+|+.|..|++||
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~~g~~~~~d~lViATGs~p~~p~i~G 193 (523)
T 1mo9_A 114 DMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPG 193 (523)
T ss_dssp CCTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEETTEEEEBSCEEECCCEECCCCCSTT
T ss_pred HHHhhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEECCEEEEeCEEEECCCCCCCCCCCCC
Confidence 11000 00 0 000 00011110 0000 00111222333999999999999
Q ss_pred CCCCCCcEEeeccCC-CCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCc
Q psy12350 848 KDMCQIPILHSRDYR-TPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSE 925 (1129)
Q Consensus 848 ~~~f~g~~~hs~~~~-~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 925 (1129)
.+. ..++++.++. ......+|+|+|||+|.+|+|+|..+++.|.+|+++++.+..++. .+.+.....+.
T Consensus 194 ~~~--~~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~------- 264 (523)
T 1mo9_A 194 VNA--KGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDR------- 264 (523)
T ss_dssp TTS--BTEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHH-------
T ss_pred ccc--CcEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccccccHHHHHHHHHH-------
Confidence 864 2377777666 545555699999999999999999999999999999987765442 22221111111
Q ss_pred cccccCCCCCeEEcCC--eeEEeC--Cc------EEecCCc-EeeccEEEEccCccCcCC-CCCCCCCeeecCCcccccc
Q psy12350 926 RVTSLCLPNNVVLKPD--VAELTP--TG------VRFQDGS-YEQVDIILCCTGYSNHYP-FLHESCGIKVVNKNVQPLY 993 (1129)
Q Consensus 926 ~~~~~~~~~~V~~~~~--i~~v~~--~~------V~~~dG~-~~~~D~VI~aTG~~~~~~-fl~~~~g~~~~~~~~~~ly 993 (1129)
+. ..+|+++.+ |.+++. ++ |++.||+ ++++|.||+|||++|+.+ ++.. .|+++++++...+.
T Consensus 265 --l~---~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~-~gl~~~~~G~i~Vd 338 (523)
T 1mo9_A 265 --MK---EQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKI-LGLDLGPKGEVLVN 338 (523)
T ss_dssp --HH---HTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHH-HTCCBCTTSCBCCC
T ss_pred --HH---hCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHH-cCCccCCCCCEEEC
Confidence 10 125666654 777754 33 6778887 899999999999999977 5654 67777655433333
Q ss_pred cceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 994 KHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 994 ~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.+ +.++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 339 ~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 378 (523)
T 1mo9_A 339 EY-LQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGE 378 (523)
T ss_dssp TT-SBCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHTTC
T ss_pred CC-CccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 33 34589999999999865 45688999999999999985
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8e-20 Score=217.94 Aligned_cols=184 Identities=17% Similarity=0.192 Sum_probs=129.5
Q ss_pred hhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhh
Q psy12350 832 DVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDI 911 (1129)
Q Consensus 832 ~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~ 911 (1129)
.++.+|+.|+.|++||.+. ..+++.++..... .+|+|+|||+|.+|+|+|..|++.|.+|+++.+......+.+.+
T Consensus 154 lviATGs~p~~p~i~G~~~---~~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~ 229 (483)
T 3dgh_A 154 FVIAVGGRPRYPDIPGAVE---YGITSDDLFSLDR-EPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQM 229 (483)
T ss_dssp EEECCCEEECCCSSTTHHH---HCBCHHHHTTCSS-CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSSTTSCHHH
T ss_pred EEEeCCCCcCCCCCCCccc---ccCcHHHHhhhhh-cCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCcccCHHH
Confidence 3444999999999999864 2345555544333 47899999999999999999999999999998743222222222
Q ss_pred hccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC--Cc---EEecCCc-----EeeccEEEEccCccCcCCCCC-C
Q psy12350 912 ATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP--TG---VRFQDGS-----YEQVDIILCCTGYSNHYPFLH-E 978 (1129)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~~---V~~~dG~-----~~~~D~VI~aTG~~~~~~fl~-~ 978 (1129)
.....+.+. ..+|+++.+ +.+++. ++ |++.+|+ ++++|.||+|||++|+.+++. +
T Consensus 230 ~~~l~~~l~------------~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~ 297 (483)
T 3dgh_A 230 AELVAASME------------ERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLP 297 (483)
T ss_dssp HHHHHHHHH------------HTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGG
T ss_pred HHHHHHHHH------------hCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcCcCCch
Confidence 222111111 114555544 777753 32 6776664 689999999999999988774 4
Q ss_pred CCCeeecCCcccccccceeecCCCCcEEEccccc--cchhHHHHHHHHHHHHHHcCC
Q psy12350 979 SCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH--TLLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 979 ~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
..|+++++ +...+..+ +.++.||||++|++.. ....+.+..||+.+|+.+.|.
T Consensus 298 ~~gl~~~~-G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~ 352 (483)
T 3dgh_A 298 NAGVTVQK-DKIPVDSQ-EATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGG 352 (483)
T ss_dssp GTTCCCBT-TBBCCCTT-CBCSSTTEEECSTTBTTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred hcCccccC-CEEEECcC-CccCCCCEEEEEcccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 47888877 43344433 3568999999999863 345688999999999999875
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9e-20 Score=213.01 Aligned_cols=281 Identities=15% Similarity=0.149 Sum_probs=171.1
Q ss_pred ceEEEEcCChHHHHHHHHhhc-CCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTE-PGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~-~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
++|+|||||+|||+||..|++ .+.+++|+|+|+++.+++... ++....
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~-------------------------~~~~~~------ 50 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPA-------------------------LPHVAI------ 50 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCS-------------------------SCCCCS------
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccc-------------------------hhhccc------
Confidence 589999999999999999998 445699999999874321100 000000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
.....+++..++.+.+++.++ .++.+ +|+.++. +.+.+.+.+ .........|| +||+||
T Consensus 51 -------~~~~~~~~~~~~~~~~~~~gv--~~~~~-~v~~i~~-----~~~~V~~~~-g~~~~~~~~~d-----~lViAt 109 (409)
T 3h8l_A 51 -------GVRDVDELKVDLSEALPEKGI--QFQEG-TVEKIDA-----KSSMVYYTK-PDGSMAEEEYD-----YVIVGI 109 (409)
T ss_dssp -------SCCCCCCEEEEHHHHTGGGTC--EEEEC-EEEEEET-----TTTEEEEEC-TTSCEEEEECS-----EEEECC
T ss_pred -------CCcCHHHHHHHHHHHHhhCCe--EEEEe-eEEEEeC-----CCCEEEEcc-CCcccceeeCC-----EEEECC
Confidence 001111233445556666666 56655 8888875 334455443 11222346799 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| ..|+.|++||..+....- .+ .+.+....+.+... .
T Consensus 110 G--~~~~~~~ipG~~~~~~~~----~~-------------------------------------~~~~~~~~~~l~~~-~ 145 (409)
T 3h8l_A 110 G--AHLATELVKGWDKYGYSV----CE-------------------------------------PEFATKLREKLESF-Q 145 (409)
T ss_dssp C--CEECGGGSBTHHHHCEES----SS-------------------------------------TTHHHHHHHHHHHC-C
T ss_pred C--CCcCccCCCChhhcCcCc----CC-------------------------------------HHHHHHHHHHHHHh-c
Confidence 9 688888887743210000 00 00000011111111 1
Q ss_pred cceeEeeceeeeecCCCCCCC-------------------------Ccccchhh----hcccc----cEEEEccccCCcc
Q psy12350 249 DKYKIINEKAFVRDPGAANGP-------------------------SGLDITHD----ISTEA----TTVFLSHHSEHVK 295 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~-------------------------sg~e~A~~----l~~~~----~~V~lv~r~~~~~ 295 (1129)
++++| ||+|. .|+|+|.. +.+.| .+|+++++.+ .+
T Consensus 146 ~~~vV-----------iG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l 213 (409)
T 3h8l_A 146 GGNIA-----------IGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YL 213 (409)
T ss_dssp SEEEE-----------EEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SS
T ss_pred CCeEE-----------EEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-cc
Confidence 33444 68882 25677754 44566 4899999987 33
Q ss_pred cccCC--------------CCeEEcCCceEEcCCceEEcCCCEeecCEEEEcccccccCCCCCCC-CCeEeecCcccccc
Q psy12350 296 KLRFP--------------NNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHES-CGIKVVNKNVQPLY 360 (1129)
Q Consensus 296 ~~~~~--------------~~i~~~~~v~~~~~~~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~-~~~~~~~~~~~~l~ 360 (1129)
+...+ -++..+..|+++++++|+++||+++++|.||+|+|++++ +++.+. .++ .+++..+...
T Consensus 214 ~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~v~~~~g~~~~~D~vi~a~G~~~~-~~l~~~~~~l-~~~~G~i~vd 291 (409)
T 3h8l_A 214 SDLSPNSRKAVASIYNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTGN-PALKNSTPDL-VDDGGFIPTD 291 (409)
T ss_dssp TTBCHHHHHHHHHHHHHHTCEEECSCCEEEECSSEEEETTSCEEECSEEEEECCEECC-HHHHTSCGGG-SCTTSCBCBB
T ss_pred cccCHHHHHHHHHHHHHCCCEEEcCCceEEECCCeEEECCCCEEeeeEEEECCCCCcc-HHHHhccccC-cCCCCCEEeC
Confidence 32111 144556789999999999999999999999999999987 555532 122 2333434444
Q ss_pred cccccCCCCCeEEecccccc--c-c-cccccceeeehhhccccc
Q psy12350 361 KHLINIEHPSMCIIGYTYRY--P-F-LHESCGIKVVNKNVQPLY 400 (1129)
Q Consensus 361 ~~~~~~~~p~l~~~G~~~~~--~-~-~~~~~~~~~~a~~~~~~~ 400 (1129)
..+..++.|++|++|..... | . .....|++.+|+++.+.+
T Consensus 292 ~~~~~~~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~l 335 (409)
T 3h8l_A 292 LNMVSIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANRL 335 (409)
T ss_dssp TTSBBSSCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 44444588999999987642 1 1 223488999999998876
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.7e-20 Score=217.37 Aligned_cols=265 Identities=17% Similarity=0.204 Sum_probs=172.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcccc--------------------c
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSS--------------------M 799 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~--------------------~ 799 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+||++.+||+|.+ .||. |.+.. .
T Consensus 5 ~DVvVIGgG~aGl~aA~~l~~~G--~~V~liEk~~~~GG~~~~---~gci----Psk~l~~~a~~~~~~~~~~~~~~~~~ 75 (466)
T 3l8k_A 5 YDVVVIGAGGAGYHGAFRLAKAK--YNVLMADPKGELGGNCLY---SGCV----PSKTVREVIQTAWRLTNIANVKIPLD 75 (466)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECTTSSSSHHHHH---HSHH----HHHHHHHHHHHHHHHHHHHCSCCCCC
T ss_pred ceEEEECCCHHHHHHHHHHHhCC--CeEEEEECCCCCCCcccc---cCCC----chHHHHHHHHHHHHHHhcccCCCCcC
Confidence 47899999999999999999999 999999999999999984 2331 10000 0
Q ss_pred cCcc-------------------cccccccc----ccccC---CCCCCCCCCC--CCChhhhhhccCCCCCCCCCCCCCC
Q psy12350 800 YKSL-------------------KTNLPKDL----MELCG---YGHKGNADKS--YIGAKDVLENYNHPIYPEFKGKDMC 851 (1129)
Q Consensus 800 y~~~-------------------~~~~~~~~----~~~~~---~~~~~~~~~~--~~~~~~v~~~~~~P~~P~i~G~~~f 851 (1129)
|..+ .....-.+ ..+.+ +......... +.....++.+|+.|+.|++||.+
T Consensus 76 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~-- 153 (466)
T 3l8k_A 76 FSTVQDRKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVE-- 153 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCCCCTTGG--
T ss_pred HHHHHHHHHhheeccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccCCCCCCcc--
Confidence 0000 00000000 00000 0000000011 22223344599999999999986
Q ss_pred CCcEEeeccCCC---CCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc--hhhhhccccEEEEecCCcc
Q psy12350 852 QIPILHSRDYRT---PEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI--TLDIATRASTVFLSHHSER 926 (1129)
Q Consensus 852 ~g~~~hs~~~~~---~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 926 (1129)
.++++.++.. .....+|+|+|||+|.+|+|+|..|++.|.+|+++.+.+..++. .+.+.....+.
T Consensus 154 --~~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~-------- 223 (466)
T 3l8k_A 154 --YCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSI-------- 223 (466)
T ss_dssp --GSBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHH--------
T ss_pred --ceEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhc--------
Confidence 2555554431 12224799999999999999999999999999999987765542 22222221110
Q ss_pred ccccCCCCCeEEcCCeeEEeC---Cc--EEec--CCc--EeeccEEEEccCccCcCCCC-CCCCCeeecCCcccccccce
Q psy12350 927 VTSLCLPNNVVLKPDVAELTP---TG--VRFQ--DGS--YEQVDIILCCTGYSNHYPFL-HESCGIKVVNKNVQPLYKHT 996 (1129)
Q Consensus 927 ~~~~~~~~~V~~~~~i~~v~~---~~--V~~~--dG~--~~~~D~VI~aTG~~~~~~fl-~~~~g~~~~~~~~~~ly~~~ 996 (1129)
+ .-++.....|.+++. ++ |.+. ||+ ++++|.||+|||++|+.+ | -+..|+++++++ ..+.. .
T Consensus 224 -l----~v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~-l~l~~~gl~~~~~G-i~vd~-~ 295 (466)
T 3l8k_A 224 -L----KLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIP-EGAREIGLSISKTG-IVVDE-T 295 (466)
T ss_dssp -H----CCCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCC-TTTGGGTCCBCSSS-BCCCT-T
T ss_pred -C----EEEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccc-cchhhcCceeCCCC-EeECC-C
Confidence 0 102222334777755 33 6676 676 789999999999999988 4 244788887766 44443 3
Q ss_pred eecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 997 INIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 997 ~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+.++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 296 ~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 333 (466)
T 3l8k_A 296 MKTNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMAN 333 (466)
T ss_dssp CBCSSTTEEECGGGTCSCCSHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHhCC
Confidence 45689999999999864 45689999999999999875
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7e-20 Score=216.73 Aligned_cols=270 Identities=19% Similarity=0.253 Sum_probs=172.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCccc--c
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPVHS--S 798 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~~~--~ 798 (1129)
.+++|||+|++|+++|++|.+.| ++|+|||++ .+||+|.+. ||-+ +|++... .
T Consensus 5 ~dVvIIGgG~aGl~aA~~l~~~g--~~V~liE~~-~~GG~~~~~---gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (463)
T 2r9z_A 5 FDLIAIGGGSGGLAVAEKAAAFG--KRVALIESK-ALGGTCVNV---GCVPKKVMWYASHLAEAVRDAPGFGVQASGGTL 78 (463)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTHHHHHH---SHHHHHHHHHHHHHHHHHHHGGGGTBCCC---C
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CcEEEEcCC-CCCCcCcCc---CchhHHHHHHHHHHHHHHhhhhhcCcccCCCCc
Confidence 46899999999999999999999 999999997 799999742 2210 0110000 0
Q ss_pred ccCcccccccc----------ccccccCCCCCC-------CC-----CCCCCChhhhhhccCCCCCCCCCCCCCCCCcEE
Q psy12350 799 MYKSLKTNLPK----------DLMELCGYGHKG-------NA-----DKSYIGAKDVLENYNHPIYPEFKGKDMCQIPIL 856 (1129)
Q Consensus 799 ~y~~~~~~~~~----------~~~~~~~~~~~~-------~~-----~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~ 856 (1129)
.+..+...... ....-....+-. .+ ...+.....++.+|+.|..|++||.+ .++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~g~~~~~d~lviAtGs~p~~p~i~G~~----~~~ 154 (463)
T 2r9z_A 79 DWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEVEGQRLSADHIVIATGGRPIVPRLPGAE----LGI 154 (463)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTEEEEEEEEEECCCEEECCCSCTTGG----GSB
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEECCEEEEcCEEEECCCCCCCCCCCCCcc----cee
Confidence 00000000000 000000000000 00 00011112233399999999999974 245
Q ss_pred eeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCCCC
Q psy12350 857 HSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLPNN 935 (1129)
Q Consensus 857 hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1129)
++.++..... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+. +. ..+
T Consensus 155 ~~~~~~~~~~-~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~---------l~---~~g 221 (463)
T 2r9z_A 155 TSDGFFALQQ-QPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAEN---------MH---AQG 221 (463)
T ss_dssp CHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHH---------HH---HTT
T ss_pred cHHHHhhhhc-cCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccccCHHHHHHHHHH---------HH---HCC
Confidence 5555443333 3789999999999999999999999999999987655432 22222111111 11 125
Q ss_pred eEEcCC--eeEEeCC----cEEecCCc-EeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCCcEEE
Q psy12350 936 VVLKPD--VAELTPT----GVRFQDGS-YEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPTMFIL 1007 (1129)
Q Consensus 936 V~~~~~--i~~v~~~----~V~~~dG~-~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~l~~i 1007 (1129)
|+++.+ |.+++.+ .|++.||+ ++++|.||+|||++|+.++|. +..|+++++++...+..+ +.++.||||++
T Consensus 222 v~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~-~~t~~~~Iya~ 300 (463)
T 2r9z_A 222 IETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAY-QNTNVPGVYAL 300 (463)
T ss_dssp CEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTT-SBCSSTTEEEC
T ss_pred CEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCC-CccCCCCEEEE
Confidence 666654 7777642 47788999 899999999999999988663 335777765553334333 34689999999
Q ss_pred cccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1008 GVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1008 G~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
|++... ...+.+..||+.+|..+.|.
T Consensus 301 GD~~~~~~~~~~A~~~g~~aa~~i~g~ 327 (463)
T 2r9z_A 301 GDITGRDQLTPVAIAAGRRLAERLFDG 327 (463)
T ss_dssp GGGGTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred eecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 999754 45689999999999999874
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.7e-19 Score=201.13 Aligned_cols=270 Identities=14% Similarity=0.107 Sum_probs=172.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC----CCCCCCCCCCccccccCcccc-----ccc-
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE----HIGCDQYGLPVHSSMYKSLKT-----NLP- 808 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~----~~g~~~~g~p~~~~~y~~~~~-----~~~- 808 (1129)
..+++|||+|++|+++|..|.+.| ++|+|||+. .+||.|.... +++.. +++.. ..+...+.. +..
T Consensus 14 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~-~~gg~~~~~~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~v~~ 88 (335)
T 2a87_A 14 VRDVIVIGSGPAGYTAALYAARAQ--LAPLVFEGT-SFGGALMTTTDVENYPGFR-NGITG-PELMDEMREQALRFGADL 88 (335)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTT--CCCEEECCS-SCSCGGGSCSCBCCSTTCT-TCBCH-HHHHHHHHHHHHHTTCEE
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEecC-CCCCceeccchhhhcCCCC-CCCCH-HHHHHHHHHHHHHcCCEE
Confidence 347899999999999999999999 999999975 7899987542 12110 00100 000000000 000
Q ss_pred --cccccccC---CCC-CCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHH
Q psy12350 809 --KDLMELCG---YGH-KGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGL 882 (1129)
Q Consensus 809 --~~~~~~~~---~~~-~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~ 882 (1129)
........ +.. .......+.....++.+|+.|+.|++||.+.|.+..+|+..+.+.....+|+|+|||+|.+|+
T Consensus 89 ~~~~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~ 168 (335)
T 2a87_A 89 RMEDVESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGRGVSSCATCDGFFFRDQDIAVIGGGDSAM 168 (335)
T ss_dssp ECCCEEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECCCCCTHHHHTBTTTEESCHHHHGGGGTTCEEEEECSSHHHH
T ss_pred EEeeEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccCCCCCchHhccCCceEEeeccchhhcCCCEEEEECCCHHHH
Confidence 00000000 000 000000111122233389999999999987777666776544433345789999999999999
Q ss_pred HHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc----EEec---
Q psy12350 883 DITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG----VRFQ--- 953 (1129)
Q Consensus 883 eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~----V~~~--- 953 (1129)
|+|..|++.+.+|+++.+.+.... ...+.. ..+. ..+|++..+ +.++++++ |.+.
T Consensus 169 e~a~~l~~~g~~V~l~~~~~~~~~-~~~~~~------------~~~~---~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~ 232 (335)
T 2a87_A 169 EEATFLTRFARSVTLVHRRDEFRA-SKIMLD------------RARN---NDKIRFLTNHTVVAVDGDTTVTGLRVRDTN 232 (335)
T ss_dssp HHHHHHTTTCSEEEEECSSSSCSS-CTTHHH------------HHHH---CTTEEEECSEEEEEEECSSSCCEEEEEEET
T ss_pred HHHHHHHHhCCeEEEEEcCCcCCc-cHHHHH------------HHhc---cCCcEEEeCceeEEEecCCcEeEEEEEEcC
Confidence 999999999999999988654311 000000 0000 236777765 88887654 7775
Q ss_pred CC--cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc--chhHHHHHHHHHHHHH
Q psy12350 954 DG--SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT--LLFNLFDLQVRLFQQL 1029 (1129)
Q Consensus 954 dG--~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~~a~~ 1029 (1129)
+| +++++|.||+|||++|+.+++. .++.+++++...+....+.++.||||++|++... .....+..|++.+|..
T Consensus 233 ~g~~~~i~~D~vi~a~G~~p~~~~~~--~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~ 310 (335)
T 2a87_A 233 TGAETTLPVTGVFVAIGHEPRSGLVR--EAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAID 310 (335)
T ss_dssp TSCCEEECCSCEEECSCEEECCTTTB--TTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHH
T ss_pred CCceEEeecCEEEEccCCccChhHhh--cccccCCCccEEeCCCCCccCCCCEEEeeecCCccHHHHHHHHHhHHHHHHH
Confidence 45 4689999999999999988886 3566665554455555557789999999998764 3456777888888776
Q ss_pred Hc
Q psy12350 1030 MQ 1031 (1129)
Q Consensus 1030 l~ 1031 (1129)
+.
T Consensus 311 i~ 312 (335)
T 2a87_A 311 AE 312 (335)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-19 Score=210.64 Aligned_cols=270 Identities=17% Similarity=0.213 Sum_probs=173.7
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC----------------------CCCCcc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ----------------------YGLPVH 796 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~----------------------~g~p~~ 796 (1129)
..+++|||+|++|+++|..|.+.| .+|+|+|+ +.+||+|... ||-+ +|++..
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~-~~~GG~~~~~---g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~ 78 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQLG--IPTVLVEG-QALGGTCLNI---GCIPSKALIHVAEQFHQASRFTEPSPLGISVA 78 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHT--CCEEEECS-SCTTHHHHHH---SHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CEEEEEcc-CCCCCcCCCc---CcHhHHHHHHHHHHHHHHhhcccccccCcccC
Confidence 347899999999999999999999 99999999 7899999732 2210 122110
Q ss_pred cc--ccCcccccc----------ccccccccCCCCCCC-------C-----CCCCCChhhhhhccCCCCCCC-CCCCCCC
Q psy12350 797 SS--MYKSLKTNL----------PKDLMELCGYGHKGN-------A-----DKSYIGAKDVLENYNHPIYPE-FKGKDMC 851 (1129)
Q Consensus 797 ~~--~y~~~~~~~----------~~~~~~~~~~~~~~~-------~-----~~~~~~~~~v~~~~~~P~~P~-i~G~~~f 851 (1129)
.. .++.+.... ......-.+..+-.. . ...+....-++.+|+.|+.|+ +| .+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~lviATGs~p~~~~~~~-~~-- 155 (458)
T 1lvl_A 79 SPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPMLP-LG-- 155 (458)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETTEEEECSEEEECCCEEECCBTTBC-CB--
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEEeeEEEEeCEEEEeCCCCCCCCCCCC-cc--
Confidence 00 000000000 000000000000000 0 001112223344999998886 55 22
Q ss_pred CCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCcccccc
Q psy12350 852 QIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSL 930 (1129)
Q Consensus 852 ~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 930 (1129)
+.++++.++..... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+. +.
T Consensus 156 -~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~---------l~- 223 (458)
T 1lvl_A 156 -GPVISSTEALAPKA-LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAES---------LK- 223 (458)
T ss_dssp -TTEECHHHHTCCSS-CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHH---------HH-
T ss_pred -CcEecHHHHhhhhc-cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHH---------HH-
Confidence 36788877766544 4799999999999999999999999999999988766542 22222211111 10
Q ss_pred CCCCCeEEcCC--eeEEeCCcEEec--CC--cEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCC
Q psy12350 931 CLPNNVVLKPD--VAELTPTGVRFQ--DG--SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPT 1003 (1129)
Q Consensus 931 ~~~~~V~~~~~--i~~v~~~~V~~~--dG--~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~ 1003 (1129)
..+|+++.+ |.+++.+++.+. +| +++++|.||+|||++|+.+++. +..|+.++++ ...+..+ +.++.||
T Consensus 224 --~~gv~i~~~~~v~~i~~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~-~~t~~~~ 299 (458)
T 1lvl_A 224 --KLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDER-CQTSMHN 299 (458)
T ss_dssp --HHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTT-CBCSSTT
T ss_pred --HCCCEEEECCEEEEEEeCCEEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCC-CcCCCCC
Confidence 115666654 788876335544 67 5789999999999999988752 4467877665 3344443 3468999
Q ss_pred cEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1004 MFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1004 l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
||++|++... ...+.+..||+.+|..+.|.
T Consensus 300 Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 330 (458)
T 1lvl_A 300 VWAIGDVAGEPMLAHRAMAQGEMVAEIIAGK 330 (458)
T ss_dssp EEECGGGGCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred EEEeeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence 9999998764 35688999999999999874
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-19 Score=215.10 Aligned_cols=183 Identities=15% Similarity=0.192 Sum_probs=134.7
Q ss_pred hhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhc---CCEEEEEecCCCCccc-h
Q psy12350 833 VLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATT---GKQAVVVGSGQSGLDI-T 908 (1129)
Q Consensus 833 v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~---~~~V~vv~~~~~~~~~-~ 908 (1129)
++.+|+.|+.|++||.+ .++++.++..... .+|+|+|||+|.+|+|+|..|++. |.+||++++.+..++. .
T Consensus 160 ViATGs~p~~p~i~G~~----~~~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d 234 (495)
T 2wpf_A 160 LLATGSWPQMPAIPGIE----HCISSNEAFYLPE-PPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFD 234 (495)
T ss_dssp EECCCEEECCCCCTTGG----GCEEHHHHTTCSS-CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTSC
T ss_pred EEeCCCCcCCCCCCCcc----ccccHHHHHhhhh-cCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccccC
Confidence 44599999999999974 3567777665444 379999999999999999999999 9999999997765542 2
Q ss_pred hhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----cEEecCCcEeeccEEEEccCccCcCCCC-CCCC
Q psy12350 909 LDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----GVRFQDGSYEQVDIILCCTGYSNHYPFL-HESC 980 (1129)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~~~dG~~~~~D~VI~aTG~~~~~~fl-~~~~ 980 (1129)
+.+.....+.+ . ..+|+++.+ |.+++.+ .|++.||+++++|.||+|+|++|+.++| -+..
T Consensus 235 ~~~~~~l~~~l---------~---~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~ 302 (495)
T 2wpf_A 235 ETIREEVTKQL---------T---ANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNV 302 (495)
T ss_dssp HHHHHHHHHHH---------H---HTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCGGGTGGGT
T ss_pred HHHHHHHHHHH---------H---hCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccccccchhhc
Confidence 22222111111 0 125666543 7787642 3778899999999999999999998865 3457
Q ss_pred CeeecCCcccccccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 981 GIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 981 g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
|+++++++...+..+ +.++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 303 gl~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 355 (495)
T 2wpf_A 303 GVKLTPKGGVQVDEF-SRTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGN 355 (495)
T ss_dssp TCCBCTTSSBCCCTT-CBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSS
T ss_pred CccCCCCCCEEECCC-CccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCC
Confidence 888875543334333 34589999999999764 45689999999999999874
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-19 Score=216.29 Aligned_cols=272 Identities=17% Similarity=0.208 Sum_probs=167.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccC--------CcCcccccCCCCCCCC-------------------CC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD--------NIGGTWLYTEHIGCDQ-------------------YG 792 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~--------~~GG~w~~~~~~g~~~-------------------~g 792 (1129)
.+++|||+|++|+.+|..|.+.| .+|+|+|+++ .+||+|... ||.+ +|
T Consensus 33 ~DVvVIGgGpaGl~aA~~la~~G--~~V~liEk~~~~~~~~~~~~GGtc~~~---GciPsk~l~~~~~~~~~~~~~~~~g 107 (519)
T 3qfa_A 33 YDLIIIGGGSGGLAAAKEAAQYG--KKVMVLDFVTPTPLGTRWGLGGTCVNV---GCIPKKLMHQAALLGQALQDSRNYG 107 (519)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECCCCCCTTCCCCCTTCHHHHH---SHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEeccCccccccCCCcccccCCc---CccchHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999 9999999965 799999743 3311 11
Q ss_pred CCcccc---ccCcccccccc----------ccccccCCC---------------CCCCCC--CCCCChhhhhhccCCCCC
Q psy12350 793 LPVHSS---MYKSLKTNLPK----------DLMELCGYG---------------HKGNAD--KSYIGAKDVLENYNHPIY 842 (1129)
Q Consensus 793 ~p~~~~---~y~~~~~~~~~----------~~~~~~~~~---------------~~~~~~--~~~~~~~~v~~~~~~P~~ 842 (1129)
++.... .|..+...... ....-.... ...... ..+....-++.+|+.|++
T Consensus 108 ~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~~ 187 (519)
T 3qfa_A 108 WKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRY 187 (519)
T ss_dssp BCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEECC
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcCC
Confidence 110000 00000000000 000000000 000000 012223334449999999
Q ss_pred CCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEec
Q psy12350 843 PEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSH 922 (1129)
Q Consensus 843 P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~ 922 (1129)
|++||.+. .++++.++.+... .+++|+|||+|.+|+|+|..|++.|.+||++.+......+.+.+.....+.+.
T Consensus 188 p~i~G~~~---~~~t~~~~~~l~~-~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~~~~~l~-- 261 (519)
T 3qfa_A 188 LGIPGDKE---YCISSDDLFSLPY-CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHME-- 261 (519)
T ss_dssp CCCTTHHH---HCBCHHHHTTCSS-CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHH--
T ss_pred CCCCCccC---ceEcHHHHhhhhh-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecccccccCCHHHHHHHHHHHH--
Confidence 99999764 3455655554433 36789999999999999999999999999998753222222222222211111
Q ss_pred CCccccccCCCCCeEEcCC-----eeEEeC---Cc--EE--ecCCc---EeeccEEEEccCccCcCCCCC-CCCCeeec-
Q psy12350 923 HSERVTSLCLPNNVVLKPD-----VAELTP---TG--VR--FQDGS---YEQVDIILCCTGYSNHYPFLH-ESCGIKVV- 985 (1129)
Q Consensus 923 ~~~~~~~~~~~~~V~~~~~-----i~~v~~---~~--V~--~~dG~---~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~- 985 (1129)
..+|++..+ |.++.+ +. +. ..+|. ++++|.||+|||++|+.++|. +..|++++
T Consensus 262 ----------~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~ 331 (519)
T 3qfa_A 262 ----------EHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINE 331 (519)
T ss_dssp ----------HTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCT
T ss_pred ----------HCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcC
Confidence 125665544 333332 22 22 24563 468999999999999988753 44788886
Q ss_pred CCcccccccceeecCCCCcEEEcccc-c-cchhHHHHHHHHHHHHHHcCC
Q psy12350 986 NKNVQPLYKHTINIEHPTMFILGVPR-H-TLLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 986 ~~~~~~ly~~~~~~~~p~l~~iG~~~-~-~~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+++...+..+ +.++.||||++|++. . ....+.+..||+.+|+.+.|.
T Consensus 332 ~~G~I~Vd~~-~~Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g~ 380 (519)
T 3qfa_A 332 KTGKIPVTDE-EQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAG 380 (519)
T ss_dssp TTCCBCCCTT-SBCSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCeEeeCCC-CccCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 3443334333 346899999999987 3 345688999999999999864
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-19 Score=210.15 Aligned_cols=274 Identities=13% Similarity=0.060 Sum_probs=168.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcccc---ccCcccccc--ccccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSS---MYKSLKTNL--PKDLMEL 814 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~---~y~~~~~~~--~~~~~~~ 814 (1129)
.+++|||+|++|+++|..|++.|...+|+++|+++.++.... ..+..-..+...... .+....... .......
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 85 (408)
T 2gqw_A 8 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRP--PLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSF 85 (408)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSG--GGGTHHHHHCCGGGSBCCCTTSCSCEEEETCCEEEE
T ss_pred CcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCC--CCCHHHhCCCchhhhhHHHHHHCCCEEEcCCEEEEE
Confidence 478999999999999999999994446999999876541100 000000000000000 000000000 0000000
Q ss_pred c--CCCCCCCCCCCCCChhhhhhccCCCCCCCC-CCCCCCCCcEEeeccCCCC-----CCCCCCeEEEEcCCccHHHHHH
Q psy12350 815 C--GYGHKGNADKSYIGAKDVLENYNHPIYPEF-KGKDMCQIPILHSRDYRTP-----EPFAGKQAVVVGSGQSGLDITL 886 (1129)
Q Consensus 815 ~--~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i-~G~~~f~g~~~hs~~~~~~-----~~~~gk~VvVVG~G~Sg~eiA~ 886 (1129)
. ...........+....-++.+|+.|+.|++ ||.+ . .+++.....+. .-..+|+|+|||+|.+|+|+|.
T Consensus 86 ~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~i~~G~~--~-~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~ 162 (408)
T 2gqw_A 86 DPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGAT--M-PVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAA 162 (408)
T ss_dssp ETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTCS--S-CEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHH
T ss_pred ECCCCEEEECCCCEEECCEEEECCCCCCCCCCccCCCC--C-cEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHH
Confidence 0 000000001112222334449999999999 9986 2 35544333221 1124899999999999999999
Q ss_pred HHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEeCCcEEecCCcEeeccE
Q psy12350 887 DIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELTPTGVRFQDGSYEQVDI 962 (1129)
Q Consensus 887 ~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~~~~V~~~dG~~~~~D~ 962 (1129)
.|++.|.+|+++++.+..++ +.+.+.....+.+. ..+|+++. .|.+++++.|++.||+++++|.
T Consensus 163 ~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~------------~~GV~i~~~~~v~~i~~~~v~~~~g~~i~~D~ 230 (408)
T 2gqw_A 163 TARTAGVHVSLVETQPRLMSRAAPATLADFVARYHA------------AQGVDLRFERSVTGSVDGVVLLDDGTRIAADM 230 (408)
T ss_dssp HHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHH------------HTTCEEEESCCEEEEETTEEEETTSCEEECSE
T ss_pred HHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHH------------HcCcEEEeCCEEEEEECCEEEECCCCEEEcCE
Confidence 99999999999998876554 22222222211111 12566654 4888875579999999999999
Q ss_pred EEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc-----------hhHHHHHHHHHHHHHHc
Q psy12350 963 ILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL-----------LFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 963 VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-----------~~~~~e~qa~~~a~~l~ 1031 (1129)
||+|+|++|+.+++.. .|+++++ + ..+..+ +.++.|+||++|++.... .+..+..||+.+|+.+.
T Consensus 231 vi~a~G~~p~~~l~~~-~gl~~~~-g-i~Vd~~-~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 306 (408)
T 2gqw_A 231 VVVGIGVLANDALARA-AGLACDD-G-IFVDAY-GRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLV 306 (408)
T ss_dssp EEECSCEEECCHHHHH-HTCCBSS-S-EECCTT-CBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHH
T ss_pred EEECcCCCccHHHHHh-CCCCCCC-C-EEECCC-CccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhc
Confidence 9999999999877654 5666653 3 233333 345899999999987532 45789999999999998
Q ss_pred CCC
Q psy12350 1032 GHI 1034 (1129)
Q Consensus 1032 g~~ 1034 (1129)
|..
T Consensus 307 g~~ 309 (408)
T 2gqw_A 307 DPT 309 (408)
T ss_dssp CTT
T ss_pred CCC
Confidence 864
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-19 Score=215.77 Aligned_cols=270 Identities=19% Similarity=0.280 Sum_probs=171.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCC-------------------CCCCCc-----
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCD-------------------QYGLPV----- 795 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~-------------------~~g~p~----- 795 (1129)
-+++|||+|++|+++|..|.+.| .+|+|||++ .+||+|... ||- .+|+..
T Consensus 12 ~dVvVIGgG~aGl~aA~~l~~~g--~~V~liE~~-~~GG~~~n~---gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 85 (479)
T 2hqm_A 12 YDYLVIGGGSGGVASARRAASYG--AKTLLVEAK-ALGGTCVNV---GCVPKKVMWYASDLATRVSHANEYGLYQNLPLD 85 (479)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTS--CCEEEEESS-CTTHHHHHH---SHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCS
T ss_pred CCEEEEcCCHHHHHHHHHHHHCC--CcEEEEeCC-CcCCcCccc---CcHHHHHHHHHHHHHHHHHhHHhcCcccccccc
Confidence 47899999999999999999999 999999997 799999731 220 011110
Q ss_pred c---ccccCcccc------------------cccccc----ccccC---CCCCCCCCC--CCCChhhhhhccCCCCCC-C
Q psy12350 796 H---SSMYKSLKT------------------NLPKDL----MELCG---YGHKGNADK--SYIGAKDVLENYNHPIYP-E 844 (1129)
Q Consensus 796 ~---~~~y~~~~~------------------~~~~~~----~~~~~---~~~~~~~~~--~~~~~~~v~~~~~~P~~P-~ 844 (1129)
. ..-|..+.. ...-.+ ..+.+ +........ .+.....++.+|+.|..| +
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~~ 165 (479)
T 2hqm_A 86 KEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPEN 165 (479)
T ss_dssp GGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCTT
T ss_pred cccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCC
Confidence 0 000000000 000000 00000 000000000 111222334499999999 9
Q ss_pred CCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecC
Q psy12350 845 FKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHH 923 (1129)
Q Consensus 845 i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~ 923 (1129)
+||.+. ++++.++..... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+.+.
T Consensus 166 i~g~~~----~~~~~~~~~l~~-~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~--- 237 (479)
T 2hqm_A 166 IPGFEL----GTDSDGFFRLEE-QPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYV--- 237 (479)
T ss_dssp STTGGG----SBCHHHHHHCSS-CCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHH---
T ss_pred CCCccc----ccchHHHhcccc-cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccccCHHHHHHHHHHHH---
Confidence 999742 345544433222 4799999999999999999999999999999987765432 2222221111110
Q ss_pred CccccccCCCCCeEEcCC--eeEEeCC------cEEecCC-cEeeccEEEEccCccCcCCCCCCCCCeeecCCccccccc
Q psy12350 924 SERVTSLCLPNNVVLKPD--VAELTPT------GVRFQDG-SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYK 994 (1129)
Q Consensus 924 ~~~~~~~~~~~~V~~~~~--i~~v~~~------~V~~~dG-~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~ 994 (1129)
..+|++..+ |.+++.+ .|++.|| +++++|.||+|||++|+..+.-+..|+++++++...+..
T Consensus 238 ---------~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~ 308 (479)
T 2hqm_A 238 ---------KEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADE 308 (479)
T ss_dssp ---------HHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCT
T ss_pred ---------hCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECC
Confidence 115666554 7777542 3778899 789999999999999998431244778887655443433
Q ss_pred ceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 995 HTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 995 ~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+ +.++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 309 ~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (479)
T 2hqm_A 309 Y-QNTNVPNIYSLGDVVGKVELTPVAIAAGRKLSNRLFGP 347 (479)
T ss_dssp T-CBCSSTTEEECGGGTTSSCCHHHHHHHHHHHHHHHHSC
T ss_pred C-CccCCCCEEEEEecCCCcccHHHHHHHHHHHHHHhcCC
Confidence 3 35689999999999654 46789999999999998864
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-19 Score=216.72 Aligned_cols=272 Identities=17% Similarity=0.196 Sum_probs=169.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcc--------cCCcCcccccCCCCCCCC-------------------CC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQ--------ADNIGGTWLYTEHIGCDQ-------------------YG 792 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~--------~~~~GG~w~~~~~~g~~~-------------------~g 792 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+|+ ...+||+|... ||.+ +|
T Consensus 7 ~DvvVIG~G~aGl~aA~~la~~G--~~V~liEk~~~~~~~~~~~~GGtc~~~---gciPsk~l~~~~~~~~~~~~~~~~g 81 (488)
T 3dgz_A 7 FDLLVIGGGSGGLACAKEAAQLG--KKVAVADYVEPSPRGTKWGLGGTCVNV---GCIPKKLMHQAALLGGMIRDAHHYG 81 (488)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECCCCCCTTSCCCCTTCHHHHH---SHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEEecccccccccCCcCCeeccc---CCcccHHHHHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999 99999998 56799999742 3310 11
Q ss_pred CCccc---cccCccccccc---c-------ccccccCCCC--------CCC-------CC--CCCCChhhhhhccCCCCC
Q psy12350 793 LPVHS---SMYKSLKTNLP---K-------DLMELCGYGH--------KGN-------AD--KSYIGAKDVLENYNHPIY 842 (1129)
Q Consensus 793 ~p~~~---~~y~~~~~~~~---~-------~~~~~~~~~~--------~~~-------~~--~~~~~~~~v~~~~~~P~~ 842 (1129)
++... .-|..+..... . ....-....+ ... .. ..+....-++.+|+.|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~ 161 (488)
T 3dgz_A 82 WEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRY 161 (488)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECC
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCC
Confidence 11000 00000000000 0 0000000000 000 00 011122233449999999
Q ss_pred CC-CCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEe
Q psy12350 843 PE-FKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLS 921 (1129)
Q Consensus 843 P~-i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~ 921 (1129)
|+ +||.+. ..+++.++..... .+++|+|||+|.+|+|+|..|++.|.+|+++.+......+.+.+.....+.+.
T Consensus 162 p~~i~G~~~---~~~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~l~~~l~- 236 (488)
T 3dgz_A 162 PTQVKGALE---YGITSDDIFWLKE-SPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHME- 236 (488)
T ss_dssp CSSCBTHHH---HCBCHHHHTTCSS-CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHH-
T ss_pred CCCCCCccc---ccCcHHHHHhhhh-cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccccCCHHHHHHHHHHHH-
Confidence 99 999754 2345555554433 46889999999999999999999999999998754222222222222211111
Q ss_pred cCCccccccCCCCCeEEcCC--eeEEeC---Cc--EEecC---Cc--EeeccEEEEccCccCcCCCCC-CCCCeeec-CC
Q psy12350 922 HHSERVTSLCLPNNVVLKPD--VAELTP---TG--VRFQD---GS--YEQVDIILCCTGYSNHYPFLH-ESCGIKVV-NK 987 (1129)
Q Consensus 922 ~~~~~~~~~~~~~~V~~~~~--i~~v~~---~~--V~~~d---G~--~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~-~~ 987 (1129)
..+|+++.+ +.+++. +. |++.+ |+ ++++|.||+|||++|+.++|. +..|+.++ ++
T Consensus 237 -----------~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~ 305 (488)
T 3dgz_A 237 -----------SHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKN 305 (488)
T ss_dssp -----------HTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSS
T ss_pred -----------HCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCC
Confidence 125666554 666643 22 55554 55 368999999999999988753 34678887 45
Q ss_pred cccccccceeecCCCCcEEEccccc--cchhHHHHHHHHHHHHHHcCC
Q psy12350 988 NVQPLYKHTINIEHPTMFILGVPRH--TLLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 988 ~~~~ly~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+...+..+ +.++.||||++|++.. ....+.+..||+.+|..+.|.
T Consensus 306 G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~ 352 (488)
T 3dgz_A 306 QKIIVDAQ-EATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGK 352 (488)
T ss_dssp CCBCCCTT-SBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHSC
T ss_pred CeEeECCC-CccCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcCC
Confidence 44334333 3468999999999863 245688999999999999875
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-19 Score=214.93 Aligned_cols=188 Identities=15% Similarity=0.162 Sum_probs=133.5
Q ss_pred hhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hh
Q psy12350 831 KDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TL 909 (1129)
Q Consensus 831 ~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~ 909 (1129)
..++.+|+.|..|+.++.+. ..++++.++..... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+
T Consensus 145 ~lvlAtG~~p~~~~~~~~~~--~~v~~~~~~~~~~~-~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~ 221 (476)
T 3lad_A 145 NVILASGSKPVEIPPAPVDQ--DVIVDSTGALDFQN-VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDE 221 (476)
T ss_dssp CEEECCCEEECCCTTSCCCS--SSEEEHHHHTSCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCH
T ss_pred EEEEcCCCCCCCCCCCCCCc--ccEEechhhhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcccCH
Confidence 34455999998877666432 35777776655443 4799999999999999999999999999999987765542 22
Q ss_pred hhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC--c--EEecCC---cEeeccEEEEccCccCcCCCC-CCC
Q psy12350 910 DIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT--G--VRFQDG---SYEQVDIILCCTGYSNHYPFL-HES 979 (1129)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~--~--V~~~dG---~~~~~D~VI~aTG~~~~~~fl-~~~ 979 (1129)
.+.....+.+ . ..+|+++.+ +.+++.+ + +.+.++ +++++|.||+|||++|+.++| .+.
T Consensus 222 ~~~~~l~~~l---------~---~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~ 289 (476)
T 3lad_A 222 QVAKEAQKIL---------T---KQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAAD 289 (476)
T ss_dssp HHHHHHHHHH---------H---HTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECCTTCCSSC
T ss_pred HHHHHHHHHH---------H---hCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccc
Confidence 2222111111 0 125666644 7777632 2 666655 578999999999999998765 445
Q ss_pred CCeeecCCcccccccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCCC
Q psy12350 980 CGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 980 ~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
.|+.+++++...+... +.++.||||++|++... ...+.+..||+.+|+.+.|+.
T Consensus 290 ~g~~~~~~G~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 344 (476)
T 3lad_A 290 SGVTLDERGFIYVDDY-CATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHK 344 (476)
T ss_dssp CSCCBCTTSCBCCCTT-SBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred cCccccCCCCEeeCCC-cccCCCCEEEEEccCCCcccHHHHHHHHHHHHHHhcCCC
Confidence 7888876654444333 34689999999999854 456899999999999998753
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.3e-20 Score=217.66 Aligned_cols=271 Identities=18% Similarity=0.223 Sum_probs=171.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCC-------------------CCCCCccc--c
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCD-------------------QYGLPVHS--S 798 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~-------------------~~g~p~~~--~ 798 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+|++ .+||+|.+. ||- .+|++... .
T Consensus 9 ~DvvVIGgG~aGl~aA~~la~~G--~~V~liE~~-~~GGtc~~~---gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 82 (492)
T 3ic9_A 9 VDVAIIGTGTAGMGAYRAAKKHT--DKVVLIEGG-AYGTTCARV---GCMPSKLLIAAADASYHASQTDLFGIQVDRISV 82 (492)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTC--SCEEEEESS-CSSCHHHHH---SHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCC-CCCCccccc---ChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCcc
Confidence 47899999999999999999999 999999996 599998631 220 01111000 0
Q ss_pred ccCcccccc-----------ccccccccC-------------CCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCc
Q psy12350 799 MYKSLKTNL-----------PKDLMELCG-------------YGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIP 854 (1129)
Q Consensus 799 ~y~~~~~~~-----------~~~~~~~~~-------------~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~ 854 (1129)
.+..+.... ......... ..........+.....++.+|+.|++|+++|... ..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~~~~~~~~~d~lViATGs~p~~p~~~~~~~--~~ 160 (492)
T 3ic9_A 83 NGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAAAG--SR 160 (492)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEETTTEEEEEEEEEECCCEECCCCHHHHTTG--GG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEEcCCcEEEeCEEEEccCCCCcCCCCCCccC--Cc
Confidence 000000000 000000000 0000000011111223334999999998776432 35
Q ss_pred EEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCC
Q psy12350 855 ILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLP 933 (1129)
Q Consensus 855 ~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1129)
++++.++..... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+ .+.
T Consensus 161 v~t~~~~~~~~~-~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~-------------~l~ 226 (492)
T 3ic9_A 161 LLTNDNLFELND-LPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEK-------------TFN 226 (492)
T ss_dssp EECHHHHTTCSS-CCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCCCHHHHHHHHH-------------HHH
T ss_pred EEcHHHHhhhhh-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccCCHHHHHHHHH-------------HHh
Confidence 777766655443 3899999999999999999999999999999987765533 2222211111 011
Q ss_pred CCeEEcCC--eeEEeC--Cc--EEec--CC--cEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCC
Q psy12350 934 NNVVLKPD--VAELTP--TG--VRFQ--DG--SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHP 1002 (1129)
Q Consensus 934 ~~V~~~~~--i~~v~~--~~--V~~~--dG--~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p 1002 (1129)
.+|+++.+ +++++. ++ +.+. || +++++|.||+|||++|+.++|. +..|+++++++...+....+.++.|
T Consensus 227 ~~V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~ 306 (492)
T 3ic9_A 227 EEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVD 306 (492)
T ss_dssp TTSEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSST
T ss_pred hCcEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCC
Confidence 12555544 777754 23 4554 78 5789999999999999998853 4478888766654333133456899
Q ss_pred CcEEEccccccc-hhHHHHHHHHHHHHHHcC
Q psy12350 1003 TMFILGVPRHTL-LFNLFDLQVRLFQQLMQG 1032 (1129)
Q Consensus 1003 ~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g 1032 (1129)
|||++|++.... ..+.+..||+.+|..+.+
T Consensus 307 ~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 337 (492)
T 3ic9_A 307 HIFVAGDANNTLTLLHEAADDGKVAGTNAGA 337 (492)
T ss_dssp TEEECGGGGTSSCSHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecCCCCccHHHHHHHHHHHHHHHcC
Confidence 999999987653 457999999999999876
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.1e-19 Score=206.77 Aligned_cols=276 Identities=13% Similarity=0.128 Sum_probs=167.3
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc---ccCCCCCCCC-CCCCcc-ccccCcccccc-ccccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW---LYTEHIGCDQ-YGLPVH-SSMYKSLKTNL-PKDLMEL 814 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w---~~~~~~g~~~-~g~p~~-~~~y~~~~~~~-~~~~~~~ 814 (1129)
+++|||+|++|+++|..|++.|.+.+|+|||+++..+..- ......+... ..+... ...|....... .......
T Consensus 3 ~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~i 82 (404)
T 3fg2_P 3 TVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELISDRMVSI 82 (404)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEECCCEEEE
T ss_pred CEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEEEEEEEE
Confidence 5789999999999999999999444999999988654210 0000000000 000000 00000000000 0000000
Q ss_pred c--CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCC-----CCCCCCeEEEEcCCccHHHHHHH
Q psy12350 815 C--GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTP-----EPFAGKQAVVVGSGQSGLDITLD 887 (1129)
Q Consensus 815 ~--~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~-----~~~~gk~VvVVG~G~Sg~eiA~~ 887 (1129)
. ...+.......+.....++.+|+.|+.|++||.+. ..+++.....+. ....+|+|+|||+|.+|+|+|..
T Consensus 83 d~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~i~g~~~--~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~ 160 (404)
T 3fg2_P 83 DREGRKLLLASGTAIEYGHLVLATGARNRMLDVPNASL--PDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAAT 160 (404)
T ss_dssp ETTTTEEEESSSCEEECSEEEECCCEEECCCCSTTTTS--TTEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHH
T ss_pred ECCCCEEEECCCCEEECCEEEEeeCCCccCCCCCCCCC--CcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence 0 00000000111222334445999999999999763 234432222211 11258999999999999999999
Q ss_pred HHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----cEEecCCcEe
Q psy12350 888 IATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----GVRFQDGSYE 958 (1129)
Q Consensus 888 la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~~~dG~~~ 958 (1129)
+++.+.+|+++++.+..++ +.+.+.....+.+. ..+|+++.+ |++++.+ +|+++||+++
T Consensus 161 l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~------------~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i 228 (404)
T 3fg2_P 161 ARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHS------------GAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTL 228 (404)
T ss_dssp HHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHH------------HTTCEEECSCCEEEEEEETTEEEEEEETTSCEE
T ss_pred HHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHH------------hCCcEEEECCEEEEEEecCCcEEEEEeCCCCEE
Confidence 9999999999998765543 22222221111110 125666654 8888653 4889999999
Q ss_pred eccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc-----------hhHHHHHHHHHHH
Q psy12350 959 QVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL-----------LFNLFDLQVRLFQ 1027 (1129)
Q Consensus 959 ~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-----------~~~~~e~qa~~~a 1027 (1129)
++|.||+|||++|+.+++.. .|+..++. + .+.. .+.++.||||++|++.... .++.+..||+.+|
T Consensus 229 ~aD~Vv~a~G~~p~~~l~~~-~gl~~~~G-i-~vd~-~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa 304 (404)
T 3fg2_P 229 PCDLVVVGVGVIPNVEIAAA-AGLPTAAG-I-IVDQ-QLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVA 304 (404)
T ss_dssp ECSEEEECCCEEECCHHHHH-TTCCBSSS-E-EECT-TSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHH
T ss_pred EcCEEEECcCCccCHHHHHh-CCCCCCCC-E-EECC-CcccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHH
Confidence 99999999999999877654 66776643 2 2322 2335899999999986542 2689999999999
Q ss_pred HHHcCCC
Q psy12350 1028 QLMQGHI 1034 (1129)
Q Consensus 1028 ~~l~g~~ 1034 (1129)
+.+.|+.
T Consensus 305 ~~i~g~~ 311 (404)
T 3fg2_P 305 ARLTGDA 311 (404)
T ss_dssp HHTTTCC
T ss_pred HHhCCCC
Confidence 9999864
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=99.77 E-value=9e-20 Score=216.68 Aligned_cols=273 Identities=18% Similarity=0.219 Sum_probs=174.0
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC--------------------CCCCc-c--c
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ--------------------YGLPV-H--S 797 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~--------------------~g~p~-~--~ 797 (1129)
+++|||+|++|+++|..|++.| ++|+|+|+++.+||+|... ||-+ +|++. . .
T Consensus 4 dvvIIGgG~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~---g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 78 (468)
T 2qae_A 4 DVVVIGGGPGGYVASIKAAQLG--MKTACVEKRGALGGTCLNV---GCIPSKALLHATHLYHDAHANFARYGLMGGEGVT 78 (468)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHH---SHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCE
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCcCCcCCCc---CcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence 6799999999999999999999 9999999998999998732 2210 01100 0 0
Q ss_pred cccCcccccc-----------cccc-----------ccccC---CCCCCCCC--CCCCChhhhhhccCCCCCCCCCCCCC
Q psy12350 798 SMYKSLKTNL-----------PKDL-----------MELCG---YGHKGNAD--KSYIGAKDVLENYNHPIYPEFKGKDM 850 (1129)
Q Consensus 798 ~~y~~~~~~~-----------~~~~-----------~~~~~---~~~~~~~~--~~~~~~~~v~~~~~~P~~P~i~G~~~ 850 (1129)
..+..+.... ...+ ..+.+ ........ ..+.....++.+|+.|..|+++|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~~g~~~ 158 (468)
T 2qae_A 79 MDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDE 158 (468)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBTTBCCCS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCCCCCCCc
Confidence 0000000000 0000 00000 00000000 01112223344999999999999764
Q ss_pred CCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccc
Q psy12350 851 CQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTS 929 (1129)
Q Consensus 851 f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 929 (1129)
..++++.++..... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+.+. .
T Consensus 159 --~~v~t~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~--------~ 227 (468)
T 2qae_A 159 --KVVLSSTGALALPR-VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALA--------K 227 (468)
T ss_dssp --SSEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHH--------H
T ss_pred --CceechHHHhhccc-CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccccCCHHHHHHHHHHHh--------h
Confidence 24777776655443 4799999999999999999999999999999988765542 2222211111110 0
Q ss_pred cCCCCCeEEcCC--eeEEeCCc----EEec--CC--cEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceee
Q psy12350 930 LCLPNNVVLKPD--VAELTPTG----VRFQ--DG--SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTIN 998 (1129)
Q Consensus 930 ~~~~~~V~~~~~--i~~v~~~~----V~~~--dG--~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~ 998 (1129)
..+|+++.+ |.+++.++ +.+. || +++++|.||+|+|++|+.++|. +..|+++++++...+..+ +.
T Consensus 228 ---~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~-~~ 303 (468)
T 2qae_A 228 ---NEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDH-FE 303 (468)
T ss_dssp ---HTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTT-SB
T ss_pred ---cCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCC-cc
Confidence 125666654 77776432 4555 77 5789999999999999988753 335777765443334333 34
Q ss_pred cCCCCcEEEccccc-c-chhHHHHHHHHHHHHHHcCC
Q psy12350 999 IEHPTMFILGVPRH-T-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 999 ~~~p~l~~iG~~~~-~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
++.||||++|++.. . ...+.+..||+.+|..+.|.
T Consensus 304 t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 340 (468)
T 2qae_A 304 TSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEILAGK 340 (468)
T ss_dssp CSSTTEEECGGGBSSSCSCHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCEEEeeccCCCCCccHhHHHHHHHHHHHHHcCC
Confidence 68999999999987 4 45689999999999999875
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-19 Score=199.66 Aligned_cols=272 Identities=11% Similarity=0.112 Sum_probs=167.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCC----CCCCCCCCCccccccCccccccc---ccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEH----IGCDQYGLPVHSSMYKSLKTNLP---KDL 811 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~----~g~~~~g~p~~~~~y~~~~~~~~---~~~ 811 (1129)
..+++|||+|++|+++|..|.+.| ++|+|||+ ..+||.|..... ++... ++. ...+...+..... ..+
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~-~~~gg~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~ 79 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARAN--LQPVLITG-MEKGGQLTTTTEVENWPGDPN-DLT-GPLLMERMHEHATKFETEI 79 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTT--CCCEEECC-SSTTGGGGGCSBCCCSTTCCS-SCB-HHHHHHHHHHHHHHTTCEE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEcc-CCCCceEecchhhhhCCCCCC-CCC-HHHHHHHHHHHHHHCCCEE
Confidence 347899999999999999999999 99999997 478998875321 11100 000 0000000000000 000
Q ss_pred c--cccCCCCCCC-C-----CCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHH
Q psy12350 812 M--ELCGYGHKGN-A-----DKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLD 883 (1129)
Q Consensus 812 ~--~~~~~~~~~~-~-----~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~e 883 (1129)
. .......... + ...+.....++.+|+.|+.|++||.+.|.+..+|+..+.+.....+|+|+|||+|.+|+|
T Consensus 80 ~~~~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e 159 (320)
T 1trb_A 80 IFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVE 159 (320)
T ss_dssp ECCCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCCCCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHH
T ss_pred EEeeeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCCCCCCChHHhCCceeEecccCCccccCCCeEEEECCCHHHHH
Confidence 0 0000000000 0 001111122333899999999999877766666665444433457899999999999999
Q ss_pred HHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc-----EEecC--
Q psy12350 884 ITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG-----VRFQD-- 954 (1129)
Q Consensus 884 iA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~-----V~~~d-- 954 (1129)
+|..|++.+.+|+++.+.+.... .+.+..... +.+ ...+|++..+ +.++..++ |++.+
T Consensus 160 ~A~~l~~~g~~Vtlv~~~~~~~~-~~~~~~~l~---------~~l---~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~ 226 (320)
T 1trb_A 160 EALYLSNIASEVHLIHRRDGFRA-EKILIKRLM---------DKV---ENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQ 226 (320)
T ss_dssp HHHHHTTTSSEEEEECSSSSCCC-CHHHHHHHH---------HHH---HTSSEEEECSCEEEEEEECSSSEEEEEEECCT
T ss_pred HHHHHHhcCCeEEEEEeCCcccc-CHHHHHHHH---------Hhc---ccCCeEEEcCceeEEEEcCCCceEEEEEEecc
Confidence 99999999999999988654321 111111000 000 0236777654 78886543 77765
Q ss_pred --C--cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccce----eecCCCCcEEEcccccc--chhHHHHHHHH
Q psy12350 955 --G--SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHT----INIEHPTMFILGVPRHT--LLFNLFDLQVR 1024 (1129)
Q Consensus 955 --G--~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~----~~~~~p~l~~iG~~~~~--~~~~~~e~qa~ 1024 (1129)
| +++++|.||+|||++|+.+++.. ++.++ ++...+...+ ..++.||||++|++... .....+..|++
T Consensus 227 ~~g~~~~i~~D~vv~a~G~~p~~~~~~~--~l~~~-~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~ 303 (320)
T 1trb_A 227 NSDNIESLDVAGLFVAIGHSPNTAIFEG--QLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGC 303 (320)
T ss_dssp TCCCCEEEECSEEEECSCEEESCGGGTT--TSCEE-TTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSCCHHHHHHHHH
T ss_pred CCCceEEEEcCEEEEEeCCCCChHHhcc--ccccc-CceEEECCCcccccccCCCCCEEEcccccCCcchhhhhhhccHH
Confidence 5 46899999999999999888763 45555 4433333332 36789999999998764 24566777777
Q ss_pred HHHHHHc
Q psy12350 1025 LFQQLMQ 1031 (1129)
Q Consensus 1025 ~~a~~l~ 1031 (1129)
.+|..+.
T Consensus 304 ~aa~~i~ 310 (320)
T 1trb_A 304 MAALDAE 310 (320)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776553
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-19 Score=199.40 Aligned_cols=258 Identities=14% Similarity=0.101 Sum_probs=153.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccC--ccc---------cccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYK--SLK---------TNLP 808 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~--~~~---------~~~~ 808 (1129)
.+++|||+||+|++||.+|.+.| ++|+|||++ ..||++.. || +|....++. .+. .+..
T Consensus 5 yDvvIIG~GpAGl~AA~~la~~g--~~v~liE~~-~~gg~~~~----G~----~~~~~~i~~~~g~~~~i~~~~l~~~~~ 73 (314)
T 4a5l_A 5 HDVVIIGSGPAAHTAAIYLGRSS--LKPVMYEGF-MAGGVAAG----GQ----LTTTTIIENFPGFPNGIDGNELMMNMR 73 (314)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCCEEECCS-SGGGCCTT----CG----GGGSSEECCSTTCTTCEEHHHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CCEEEEecC-CCCCcccC----CC----cCChHHhhhccCCcccCCHHHHHHHHH
Confidence 47899999999999999999999 999999986 46666542 22 111111110 000 0000
Q ss_pred cccccccCCCC----------CC-------CCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCC--CCCCC
Q psy12350 809 KDLMELCGYGH----------KG-------NADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTP--EPFAG 869 (1129)
Q Consensus 809 ~~~~~~~~~~~----------~~-------~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~--~~~~g 869 (1129)
.....+ ...+ .. .....+....-++.+|+.|+.|++||.+.+.+..++...+.+. ..+++
T Consensus 74 ~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~ 152 (314)
T 4a5l_A 74 TQSEKY-GTTIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHVPGEDKYWQNGVSACAICDGAVPIFRN 152 (314)
T ss_dssp HHHHHT-TCEEECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTT
T ss_pred HHHhhc-CcEEEEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCCCccccccccceeeehhhhhhhhhcCC
Confidence 000000 0000 00 0011122223344499999999999988766666666555433 23578
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP 947 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~ 947 (1129)
|+|+|||+|.+|+|+|..|++.|++||++++................ ..++..... +.++..
T Consensus 153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~i~~ 216 (314)
T 4a5l_A 153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRASKTMQERVLN----------------HPKIEVIWNSELVELEG 216 (314)
T ss_dssp SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHT----------------CTTEEEECSEEEEEEEE
T ss_pred CeEEEECCChHHHHHHHHHHHhCCeeeeecccccccccchhhhhhhc----------------ccceeeEeeeeeEEEEe
Confidence 99999999999999999999999999999876543221110000000 001111111 112211
Q ss_pred -----CcEE-----ecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc--h
Q psy12350 948 -----TGVR-----FQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL--L 1015 (1129)
Q Consensus 948 -----~~V~-----~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~--~ 1015 (1129)
+++. ..+++++++|.|++|+|++|+..++.. ++.+++++.. +..+ +.++.|+||++||+.... .
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~--~~~~~~~G~i-v~~~-~~Ts~pgIyA~GDv~~~~~~~ 292 (314)
T 4a5l_A 217 DGDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGG--QVKTADDGYI-LTEG-PKTSVDGVFACGDVCDRVYRQ 292 (314)
T ss_dssp SSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTT--SSCBCTTSCB-CCBT-TBCSSTTEEECSTTTCSSCCC
T ss_pred eeeccceeEEeecccccceeeccccceEecccccChhHhcc--cceEcCCeeE-eCCC-CccCCCCEEEEEeccCCcchH
Confidence 1122 235667899999999999999988864 3455555443 2222 457899999999987543 3
Q ss_pred hHHHHHHHHHHHHH
Q psy12350 1016 FNLFDLQVRLFQQL 1029 (1129)
Q Consensus 1016 ~~~~e~qa~~~a~~ 1029 (1129)
...+-.|++.+|..
T Consensus 293 ~~~A~~~G~~AA~~ 306 (314)
T 4a5l_A 293 AIVAAGSGCMAALS 306 (314)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555666665543
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-19 Score=212.80 Aligned_cols=270 Identities=17% Similarity=0.245 Sum_probs=171.7
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC--------------------CCCCccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ--------------------YGLPVHS-- 797 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~--------------------~g~p~~~-- 797 (1129)
.+++|||+|++|+++|++|.+.| .+|+|||++ .+||+|.. .||-+ +|++...
T Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g--~~V~liE~~-~~GG~~~~---~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~ 78 (450)
T 1ges_A 5 YDYIAIGGGSGGIASINRAAMYG--QKCALIEAK-ELGGTCVN---VGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINK 78 (450)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--CCEEEEESS-CTTHHHHH---HSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEcCC-CCCCcccc---cCccChHHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 46899999999999999999999 999999997 79999973 22210 0110000
Q ss_pred cccCcccccccc----------ccccccCCCCCCC-------C-----CCCCCChhhhhhccCCCCCCCCCCCCCCCCcE
Q psy12350 798 SMYKSLKTNLPK----------DLMELCGYGHKGN-------A-----DKSYIGAKDVLENYNHPIYPEFKGKDMCQIPI 855 (1129)
Q Consensus 798 ~~y~~~~~~~~~----------~~~~~~~~~~~~~-------~-----~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~ 855 (1129)
.-+..+...... ....-....+-.. . ...+....-++.+|+.|..|++||.+ .+
T Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~~g~~~~~d~lviAtGs~p~~p~i~g~~----~~ 154 (450)
T 1ges_A 79 FNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVE----YG 154 (450)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEETTEEEEEEEEEECCCEEECCCCSTTGG----GS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEECCEEEEeCEEEECCCCCCCCCCCCCcc----ce
Confidence 000000000000 0000000000000 0 00011112233399999999999974 24
Q ss_pred EeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCCC
Q psy12350 856 LHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLPN 934 (1129)
Q Consensus 856 ~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1129)
+++.++..... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+.+ . ..
T Consensus 155 ~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l---------~---~~ 221 (450)
T 1ges_A 155 IDSDGFFALPA-LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVM---------N---AE 221 (450)
T ss_dssp BCHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHH---------H---HH
T ss_pred ecHHHhhhhhh-cCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhhhhHHHHHHHHHHH---------H---HC
Confidence 45555443333 3799999999999999999999999999999987665432 222221111111 0 11
Q ss_pred CeEEcCC--eeEEeCC-----cEEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCCcEE
Q psy12350 935 NVVLKPD--VAELTPT-----GVRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPTMFI 1006 (1129)
Q Consensus 935 ~V~~~~~--i~~v~~~-----~V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~l~~ 1006 (1129)
+|+++.+ |.+++.+ .|++.||+++++|.||+|+|++|+.++|. +..|+++++++...+..++ .++.||||+
T Consensus 222 Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~-~t~~~~IyA 300 (450)
T 1ges_A 222 GPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQ-NTNIEGIYA 300 (450)
T ss_dssp SCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTS-BCSSTTEEE
T ss_pred CCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCC-ccCCCCEEE
Confidence 5666544 7777542 37788999999999999999999988663 3467777755543443333 468999999
Q ss_pred Ecccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1007 LGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1007 iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+|++... ...+.+..||+.+|..+.|.
T Consensus 301 ~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 328 (450)
T 1ges_A 301 VGDNTGAVELTPVAVAAGRRLSERLFNN 328 (450)
T ss_dssp CSGGGTSCCCHHHHHHHHHHHHHHHHTT
T ss_pred EeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 9998754 46689999999999999874
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.3e-19 Score=209.60 Aligned_cols=271 Identities=14% Similarity=0.180 Sum_probs=167.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCcccccccccc--------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDL-------- 811 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~-------- 811 (1129)
-+++|||+|++|+++|..|++.++..+|+|||+++.+++......+.-. +.. ....+........
T Consensus 4 ~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~---~~~----~~~~~~~~~~~~~~~~~gi~v 76 (449)
T 3kd9_A 4 KKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVE---GLS----TPDKLMYYPPEVFIKKRGIDL 76 (449)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-------------------------------CTHHHHTTCEE
T ss_pred CcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccC---CCC----CHHHhhhcCHHHHHHhcCcEE
Confidence 4689999999999999999999555999999999877643210000000 000 0000000000000
Q ss_pred ------cccc--CCCCCCCCC-CCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCC-------CCCCCCCeEEEE
Q psy12350 812 ------MELC--GYGHKGNAD-KSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRT-------PEPFAGKQAVVV 875 (1129)
Q Consensus 812 ------~~~~--~~~~~~~~~-~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~-------~~~~~gk~VvVV 875 (1129)
.... ...+..... ..+....-++.+|+.|+.|++||++. . .++......+ ...+.+|+|+||
T Consensus 77 ~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~i~G~~~-~-~v~~~~~~~~~~~~~~~~~~~~~~~vvVi 154 (449)
T 3kd9_A 77 HLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIEGVNL-K-GVFTADLPPDALAIREYMEKYKVENVVII 154 (449)
T ss_dssp ETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEECCCSCBTTTS-T-TEECSCSTHHHHHHHHHHSSSCCCEEEEE
T ss_pred EecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCCCCCCCCCCC-C-CEEEeCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 0000 000000000 01222334445999999999999864 2 2443332221 123468999999
Q ss_pred cCCccHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEc--CCeeEEeCCc--
Q psy12350 876 GSGQSGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLK--PDVAELTPTG-- 949 (1129)
Q Consensus 876 G~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~i~~v~~~~-- 949 (1129)
|+|.+|+|+|..|++.|.+|+++++.+..++ +.+.+.....+. + ...|++. ..+.+++.++
T Consensus 155 GgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~---------l----~~~v~i~~~~~v~~i~~~~~v 221 (449)
T 3kd9_A 155 GGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEK---------L----KKHVNLRLQEITMKIEGEERV 221 (449)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHH---------H----TTTSEEEESCCEEEEECSSSC
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHH---------H----HhCcEEEeCCeEEEEeccCcE
Confidence 9999999999999999999999998776553 222222211110 1 1114443 3477776543
Q ss_pred -EEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccc-----------cchhH
Q psy12350 950 -VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH-----------TLLFN 1017 (1129)
Q Consensus 950 -V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~-----------~~~~~ 1017 (1129)
..+.||+++++|.||+|||++|+.+++.. +|+++++++...+... +.++.||||++|++.. ....+
T Consensus 222 ~~v~~~g~~i~~D~Vv~a~G~~p~~~l~~~-~gl~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~ 299 (449)
T 3kd9_A 222 EKVVTDAGEYKAELVILATGIKPNIELAKQ-LGVRIGETGAIWTNEK-MQTSVENVYAAGDVAETRHVITGRRVWVPLAP 299 (449)
T ss_dssp CEEEETTEEEECSEEEECSCEEECCHHHHH-TTCCBCTTSSBCCCTT-CBCSSTTEEECSTTBCEEBTTTCSEECCCCHH
T ss_pred EEEEeCCCEEECCEEEEeeCCccCHHHHHh-CCccCCCCCCEEECCC-CccCCCCEEEeeeeeeeccccCCceEEeccHH
Confidence 35678888999999999999999877654 6777776554333332 4468999999999863 13568
Q ss_pred HHHHHHHHHHHHHcCCC
Q psy12350 1018 LFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 1018 ~~e~qa~~~a~~l~g~~ 1034 (1129)
.+..||+.+|+.+.|..
T Consensus 300 ~A~~~g~~aa~~i~g~~ 316 (449)
T 3kd9_A 300 AGNKMGYVAGSNIAGKE 316 (449)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999999863
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-19 Score=213.49 Aligned_cols=276 Identities=10% Similarity=0.076 Sum_probs=163.8
Q ss_pred cceEEEEcCChHHHHHHHHhhc-CCC----CceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTE-PGS----GFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIME 83 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~-~~~----~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~ 83 (1129)
+++|+||||||||++||..|++ .++ +++|+|||+.+.+||+|.|.-
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv----------------------------- 53 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGV----------------------------- 53 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTS-----------------------------
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCcccccc-----------------------------
Confidence 4799999999999999999988 633 699999999989999987510
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeE
Q psy12350 84 LSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163 (1129)
Q Consensus 84 ~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 163 (1129)
.+ .++...++..++++++++.++ .++.+++| .+ .+++ .+ ....|| +
T Consensus 54 ~p----------~~~~~~~~~~~~~~~~~~~~v--~~~~~v~v---~~--------~v~~---~~---~~~~~d-----~ 99 (456)
T 1lqt_A 54 AP----------DHPKIKSISKQFEKTAEDPRF--RFFGNVVV---GE--------HVQP---GE---LSERYD-----A 99 (456)
T ss_dssp CT----------TCTGGGGGHHHHHHHHTSTTE--EEEESCCB---TT--------TBCH---HH---HHHHSS-----E
T ss_pred CC----------CCCCHHHHHHHHHHHHhcCCC--EEEeeEEE---CC--------EEEE---CC---CeEeCC-----E
Confidence 01 122334567778887777655 45555332 11 1111 11 134689 9
Q ss_pred EEEecccCCC-CCccccccchhhhcccccccCCCCCcccccccccch-hhhcccccccCCCCCCccchhccccccccccc
Q psy12350 164 LQLMQGHVTL-PSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEK-YLNSLCSMMRDESPVPPVLLKIYFESFARCSE 241 (1129)
Q Consensus 164 lvvAtG~~~~-p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 241 (1129)
||+||| +. |..|++||.. +.| .++.. +..-. ........
T Consensus 100 lViAtG--~~~~~~~~ipG~~---~~g---------------v~~~~~~~~~~-------------------~~~~d~~~ 140 (456)
T 1lqt_A 100 VIYAVG--AQSDRMLNIPGED---LPG---------------SIAAVDFVGWY-------------------NAHPHFEQ 140 (456)
T ss_dssp EEECCC--CCEECCCCCTTTT---STT---------------EEEHHHHHHHH-------------------TTCGGGTT
T ss_pred EEEeeC--CCCCCCCCCCCCC---CCC---------------cEEHHHHHhhh-------------------hcCccccc
Confidence 999999 54 6667777732 111 11111 10000 00000001
Q ss_pred ccccccccceeEeeceeeeecCCCCCCCCcccchhhhccc--------------------c-cEEEEccccCCcccc---
Q psy12350 242 DFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTE--------------------A-TTVFLSHHSEHVKKL--- 297 (1129)
Q Consensus 242 ~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~--------------------~-~~V~lv~r~~~~~~~--- 297 (1129)
.+.....++++| ||+|++|+|+|..|++. + ++|++++|+..+...
T Consensus 141 ~~~~~~~~~vvV-----------IG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~ 209 (456)
T 1lqt_A 141 VSPDLSGARAVV-----------IGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTT 209 (456)
T ss_dssp CCCCCCSSEEEE-----------ECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCH
T ss_pred chhhcCCCEEEE-----------ECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccCh
Confidence 111112344444 79999999999999874 3 699999998754210
Q ss_pred -------------------c---------------------------CC------CCe--EEcCCceEEcCC----ceEE
Q psy12350 298 -------------------R---------------------------FP------NNV--VKKPDIAELTPT----GVRF 319 (1129)
Q Consensus 298 -------------------~---------------------------~~------~~i--~~~~~v~~~~~~----~v~~ 319 (1129)
. .. ..| .....+.++.++ +|.+
T Consensus 210 ~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~ 289 (456)
T 1lqt_A 210 LELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVL 289 (456)
T ss_dssp HHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEE
T ss_pred HHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEE
Confidence 0 00 112 334456777654 2666
Q ss_pred c----------------CC--CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc
Q psy12350 320 Q----------------DG--SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP 381 (1129)
Q Consensus 320 ~----------------dg--~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~ 381 (1129)
+ +| +++++|.||+|+||+++. +. ++..+++..+....+...++.|++|.+|.....|
T Consensus 290 ~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~--l~---gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp 364 (456)
T 1lqt_A 290 GRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP--TP---GLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGP 364 (456)
T ss_dssp EEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCC--CT---TSCCBTTTTBCCEETTEETTCSSEEECTHHHHCS
T ss_pred EEEEecCCCcccccccCCCceEEEEcCEEEEccccccCC--CC---CCcccCCCCeeECCCCcCCCCCCEEEEeccCCCC
Confidence 4 34 357999999999999876 22 2333332211111222224689999999885433
Q ss_pred c---cccccceeeehhhccccccc
Q psy12350 382 F---LHESCGIKVVNKNVQPLYKH 402 (1129)
Q Consensus 382 ~---~~~~~~~~~~a~~~~~~~~~ 402 (1129)
. ..+..||+.+|.++.+.+.+
T Consensus 365 ~~~i~~a~~~g~~~a~~i~~~l~~ 388 (456)
T 1lqt_A 365 TGVIGTNKKDAQDTVDTLIKNLGN 388 (456)
T ss_dssp CSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHh
Confidence 2 12447888888888766544
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-19 Score=216.13 Aligned_cols=183 Identities=16% Similarity=0.203 Sum_probs=133.2
Q ss_pred hhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhc---CCEEEEEecCCCCccc-h
Q psy12350 833 VLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATT---GKQAVVVGSGQSGLDI-T 908 (1129)
Q Consensus 833 v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~---~~~V~vv~~~~~~~~~-~ 908 (1129)
++.+|+.|..|++||.+ .++++.++..... .+|+|+|||+|.+|+|+|..|++. |.+|+++++.+..++. .
T Consensus 156 viAtGs~p~~p~i~g~~----~~~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d 230 (490)
T 1fec_A 156 LLATGSWPQHLGIEGDD----LCITSNEAFYLDE-APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFD 230 (490)
T ss_dssp EECCCEEECCCCSBTGG----GCBCHHHHTTCSS-CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSC
T ss_pred EEeCCCCCCCCCCCCcc----ceecHHHHhhhhh-cCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccccC
Confidence 44599999999999974 2455555544333 379999999999999999999999 9999999998765542 2
Q ss_pred hhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----cEEecCCcEeeccEEEEccCccCcCCCC-CCCC
Q psy12350 909 LDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----GVRFQDGSYEQVDIILCCTGYSNHYPFL-HESC 980 (1129)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~~~dG~~~~~D~VI~aTG~~~~~~fl-~~~~ 980 (1129)
+.+.....+.+ . ..+|+++.+ |.+++.+ .|++.||+++++|.||+|+|++|+.++| -+..
T Consensus 231 ~~~~~~l~~~l---------~---~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~ 298 (490)
T 1fec_A 231 SELRKQLTEQL---------R---ANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKA 298 (490)
T ss_dssp HHHHHHHHHHH---------H---HTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCGGGG
T ss_pred HHHHHHHHHHH---------H---hCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCccccCchhc
Confidence 22211111111 0 125666544 7777542 3778899899999999999999998865 3457
Q ss_pred CeeecCCcccccccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 981 GIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 981 g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
|+++++++...+..+ +.++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 299 gl~~~~~G~I~Vd~~-~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 351 (490)
T 1fec_A 299 GVEVAKNGAIKVDAY-SKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFAN 351 (490)
T ss_dssp TCCBCTTSCBCCCTT-CBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSS
T ss_pred CccCCCCCCEEECCC-CccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCC
Confidence 888875554344433 34689999999999864 46789999999999999874
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-19 Score=215.49 Aligned_cols=270 Identities=18% Similarity=0.216 Sum_probs=171.7
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCC-------------------CCCCCcccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCD-------------------QYGLPVHSS-- 798 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~-------------------~~g~p~~~~-- 798 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+|+ +.+||+|... ||. .+|++....
T Consensus 27 ~DVvVIGgG~aGl~aA~~la~~G--~~V~liEk-~~~GG~~~~~---gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~ 100 (484)
T 3o0h_A 27 FDLFVIGSGSGGVRAARLAGALG--KRVAIAEE-YRIGGTCVIR---GCVPKKLYFYASQYAQEFSKSIGFGWKYADPIF 100 (484)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEES-SCTTHHHHHH---SHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCc--CEEEEEeC-CCCCCceecc---CccccHHHHHHHHHHHHHHHHHhCCcccCCCcc
Confidence 58899999999999999999999 99999999 7899998742 221 011110000
Q ss_pred ccCcccc-------cccccc---ccccCCCCC--------CC------CCCCCCChhhhhhccCCCC-CCCCCCCCCCCC
Q psy12350 799 MYKSLKT-------NLPKDL---MELCGYGHK--------GN------ADKSYIGAKDVLENYNHPI-YPEFKGKDMCQI 853 (1129)
Q Consensus 799 ~y~~~~~-------~~~~~~---~~~~~~~~~--------~~------~~~~~~~~~~v~~~~~~P~-~P~i~G~~~f~g 853 (1129)
.|..+.. ...... ..-....+- .. ....+.....++.+|+.|. .|++||.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~--- 177 (484)
T 3o0h_A 101 NWEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDL--- 177 (484)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTTCCEEEEEEEEECCCEEECCC--CBTGGG---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEecCCeEEEeCEEEEccCCCcccCCCCCCccc---
Confidence 0000000 000000 000000000 00 0111112233344999999 999999762
Q ss_pred cEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCC
Q psy12350 854 PILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCL 932 (1129)
Q Consensus 854 ~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1129)
++++.++..... .+|+|+|||+|.+|+|+|..+++.|.+|+++.+.+..++. .+.+.....+.+.
T Consensus 178 -~~~~~~~~~~~~-~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~------------ 243 (484)
T 3o0h_A 178 -CLTSNEIFDLEK-LPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMV------------ 243 (484)
T ss_dssp -SBCTTTGGGCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHH------------
T ss_pred -cccHHHHHhHHh-cCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccccCHHHHHHHHHHHH------------
Confidence 344444443332 4899999999999999999999999999999987655432 2222111111100
Q ss_pred CCCeEEcCC--eeEEeCC----cEEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCCcE
Q psy12350 933 PNNVVLKPD--VAELTPT----GVRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPTMF 1005 (1129)
Q Consensus 933 ~~~V~~~~~--i~~v~~~----~V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~l~ 1005 (1129)
..+|+++.+ |.+++.+ .|++.||+++++|.||+|||++|+..+|. +..|+++++++...+... +.++.||||
T Consensus 244 ~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~Iy 322 (484)
T 3o0h_A 244 AKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEK-MTTNVSHIW 322 (484)
T ss_dssp HHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTT-SBCSSTTEE
T ss_pred HCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCC-CCCCCCCEE
Confidence 115666653 7888654 37888999999999999999999988764 336777776554433333 347899999
Q ss_pred EEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1006 ILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1006 ~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
++|++... ...+.+..||+.+|+.+.|.
T Consensus 323 a~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 351 (484)
T 3o0h_A 323 AVGDVTGHIQLTPVAIHDAMCFVKNAFEN 351 (484)
T ss_dssp ECGGGGTSCCCHHHHHHHHHHHHHHHHC-
T ss_pred EEEecCCCCcCHHHHHHHHHHHHHHHcCC
Confidence 99998764 45689999999999999874
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-19 Score=210.76 Aligned_cols=273 Identities=16% Similarity=0.209 Sum_probs=176.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC--------------------CCCCccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ--------------------YGLPVHS-- 797 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~--------------------~g~p~~~-- 797 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+|+++.+||+|... +|.+ +|++...
T Consensus 7 ~dvvIIGaG~aGl~aA~~l~~~g--~~V~liE~~~~~GG~~~~~---g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (470)
T 1dxl_A 7 NDVVIIGGGPGGYVAAIKAAQLG--FKTTCIEKRGALGGTCLNV---GCIPSKALLHSSHMYHEAKHSFANHGVKVSNVE 81 (470)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSSSCCSHHHH---SHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCccccccCc---CccchHHHHHHHHHHHHHHHHHHhcCcccCCCc
Confidence 46899999999999999999999 9999999998999998632 2210 0110000
Q ss_pred cccCccccc-----------cccccc----cc-cC---------CCCCCCCC--CCCCChhhhhhccCCCCCCCCCCCCC
Q psy12350 798 SMYKSLKTN-----------LPKDLM----EL-CG---------YGHKGNAD--KSYIGAKDVLENYNHPIYPEFKGKDM 850 (1129)
Q Consensus 798 ~~y~~~~~~-----------~~~~~~----~~-~~---------~~~~~~~~--~~~~~~~~v~~~~~~P~~P~i~G~~~ 850 (1129)
..+..+... ...... .+ .+ +....... ..+.....++.+|+.|..|+++|.+.
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~~g~~~ 161 (470)
T 1dxl_A 82 IDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDE 161 (470)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCBTTBCCCS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCc
Confidence 000000000 000000 00 00 00000000 11222233344999999999999753
Q ss_pred CCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccc
Q psy12350 851 CQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTS 929 (1129)
Q Consensus 851 f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 929 (1129)
..++++.+...... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+. +.
T Consensus 162 --~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~---------l~ 229 (470)
T 1dxl_A 162 --KKIVSSTGALALSE-IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRS---------LE 229 (470)
T ss_dssp --SSEECHHHHTTCSS-CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHH---------HH
T ss_pred --ccEEeHHHhhhhhh-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccccHHHHHHHHHH---------HH
Confidence 24777777665443 4799999999999999999999999999999987765542 22222211111 11
Q ss_pred cCCCCCeEEcCC--eeEEeCCc----EEec---CC--cEeeccEEEEccCccCcCCCCC-CCCCeeecCCccccccccee
Q psy12350 930 LCLPNNVVLKPD--VAELTPTG----VRFQ---DG--SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTI 997 (1129)
Q Consensus 930 ~~~~~~V~~~~~--i~~v~~~~----V~~~---dG--~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~ 997 (1129)
..+|+++.+ |.+++.++ +.+. +| +++++|.||+|+|++|+.++|. +.+|+++++++...+..+ +
T Consensus 230 ---~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~-~ 305 (470)
T 1dxl_A 230 ---KQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNER-F 305 (470)
T ss_dssp ---HSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTT-C
T ss_pred ---HcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcC-C
Confidence 125666554 78886532 4454 55 5789999999999999988853 447888876553344443 3
Q ss_pred ecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 998 NIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 998 ~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 306 ~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 342 (470)
T 1dxl_A 306 STNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGK 342 (470)
T ss_dssp BCSSTTEEECSTTSSSCCCHHHHHHHHHHHHHHHTTS
T ss_pred ccCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 4689999999999765 35688999999999999875
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-19 Score=212.49 Aligned_cols=272 Identities=20% Similarity=0.283 Sum_probs=174.0
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCC------------------CCCCCccc--ccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCD------------------QYGLPVHS--SMY 800 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~------------------~~g~p~~~--~~y 800 (1129)
+++|||+|++|+++|..|.+.| .+|+|+|+++.+||+|... ||. .+|++... .-+
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~---g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~ 77 (455)
T 2yqu_A 3 DLLVIGAGPGGYVAAIRAAQLG--MKVGVVEKEKALGGTCLRV---GCIPSKALLETTERIYEAKKGLLGAKVKGVELDL 77 (455)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHH---SHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECH
T ss_pred CEEEECCChhHHHHHHHHHHCC--CeEEEEeCCCCCCCcccee---cchhHHHHHHHHHHHHHHhhhcCCcccCCCccCH
Confidence 5789999999999999999999 9999999998999998732 220 01111000 000
Q ss_pred Cccccc-------cc---cccccccCCC--------CCCC------CCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEE
Q psy12350 801 KSLKTN-------LP---KDLMELCGYG--------HKGN------ADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPIL 856 (1129)
Q Consensus 801 ~~~~~~-------~~---~~~~~~~~~~--------~~~~------~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~ 856 (1129)
..+... .. .....-.+.. .... ....+.....++.+|+.|+.|+++|.+. ..++
T Consensus 78 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~g~~~~~d~lviAtG~~p~~~~~~g~~~--~~v~ 155 (455)
T 2yqu_A 78 PALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGSAPLIPPWAQVDY--ERVV 155 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTCCEEEEEEEEECCCEEECCCTTBCCCS--SSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEeeCCEEEEecEEEECCCCCCCCCCCCCCCc--CcEe
Confidence 000000 00 0000000000 0000 0001111222334999999999998653 2477
Q ss_pred eeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCCCC
Q psy12350 857 HSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLPNN 935 (1129)
Q Consensus 857 hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1129)
++.++.+... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+. +. ..+
T Consensus 156 ~~~~~~~~~~-~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~---------l~---~~G 222 (455)
T 2yqu_A 156 TSTEALSFPE-VPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERV---------FK---KQG 222 (455)
T ss_dssp CHHHHTCCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHH---------HH---HHT
T ss_pred chHHhhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccccCHHHHHHHHHH---------HH---HCC
Confidence 8777665443 4799999999999999999999999999999987765432 11111111111 10 115
Q ss_pred eEEcCC--eeEEeC--Cc--EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCCcEEEc
Q psy12350 936 VVLKPD--VAELTP--TG--VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPTMFILG 1008 (1129)
Q Consensus 936 V~~~~~--i~~v~~--~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG 1008 (1129)
|+++.+ |.+++. ++ +.+.||+++++|.||+|||++++.+++. +..|+.+++++...+..+ +.++.|+||++|
T Consensus 223 v~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~-~~t~~~~iya~G 301 (455)
T 2yqu_A 223 LTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEH-LRTRVPHIYAIG 301 (455)
T ss_dssp CEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTT-SBCSSTTEEECG
T ss_pred CEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCC-cccCCCCEEEEe
Confidence 666543 777754 23 4556898999999999999999988753 346777765443334333 346899999999
Q ss_pred cccccc-hhHHHHHHHHHHHHHHcCC
Q psy12350 1009 VPRHTL-LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1009 ~~~~~~-~~~~~e~qa~~~a~~l~g~ 1033 (1129)
++.... ..+.+..||+.+|..+.|.
T Consensus 302 D~~~~~~~~~~A~~~g~~aa~~i~~~ 327 (455)
T 2yqu_A 302 DVVRGPMLAHKASEEGIAAVEHMVRG 327 (455)
T ss_dssp GGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCccCHHHHHHhHHHHHHHHcCC
Confidence 987653 4678999999999999874
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-18 Score=193.70 Aligned_cols=267 Identities=14% Similarity=0.125 Sum_probs=165.7
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcc--ccccCcccccccc---------
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVH--SSMYKSLKTNLPK--------- 809 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~--~~~y~~~~~~~~~--------- 809 (1129)
+++|||+|++|+++|..|.+.| ++++|+|+ .+||.|....... ...+.+.. ..+...+.....+
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g--~~v~li~~--~~gG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 77 (310)
T 1fl2_A 3 DVLIVGSGPAGAAAAIYSARKG--IRTGLMGE--RFGGQILDTVDIE-NYISVPKTEGQKLAGALKVHVDEYDVDVIDSQ 77 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT--CCEEEECS--STTGGGGGCCEEC-CBTTBSSEEHHHHHHHHHHHHHTSCEEEECSC
T ss_pred CEEEECcCHHHHHHHHHHHHCC--CcEEEEeC--CCCceeccccccc-cccCcCCCCHHHHHHHHHHHHHHcCCeEEccC
Confidence 5789999999999999999999 99999986 5899997421000 00000000 0000000000000
Q ss_pred cccccc-------CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHH
Q psy12350 810 DLMELC-------GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGL 882 (1129)
Q Consensus 810 ~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~ 882 (1129)
...... .+.........+....-++.+|+.|+.|++||.+.|.+..+|+..+.+...+.+|+|+|||+|.+|+
T Consensus 78 ~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~ 157 (310)
T 1fl2_A 78 SASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGV 157 (310)
T ss_dssp CEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHH
T ss_pred EEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhcccceeEEeccCcHhhcCCCEEEEECCCHHHH
Confidence 000000 0000000000111122233389899999999998887766665544333445789999999999999
Q ss_pred HHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----cEEecC-
Q psy12350 883 DITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----GVRFQD- 954 (1129)
Q Consensus 883 eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~~~d- 954 (1129)
|+|..|++.+.+|+++.+.+... ....+. ..+.. ..+|++..+ +.++.++ +|++.+
T Consensus 158 e~A~~l~~~g~~Vtlv~~~~~~~-~~~~~~-------------~~l~~--~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~ 221 (310)
T 1fl2_A 158 EAAIDLAGIVEHVTLLEFAPEMK-ADQVLQ-------------DKLRS--LKNVDIILNAQTTEVKGDGSKVVGLEYRDR 221 (310)
T ss_dssp HHHHHHHTTBSEEEEECSSSSCC-SCHHHH-------------HHHHT--CTTEEEESSEEEEEEEESSSSEEEEEEEET
T ss_pred HHHHHHHHhCCEEEEEEeCcccC-ccHHHH-------------HHHhh--CCCeEEecCCceEEEEcCCCcEEEEEEEEC
Confidence 99999999999999998865431 111000 01110 136777765 7777653 467754
Q ss_pred --Cc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc--hhHHHHHHHHHHHH
Q psy12350 955 --GS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL--LFNLFDLQVRLFQQ 1028 (1129)
Q Consensus 955 --G~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~--~~~~~e~qa~~~a~ 1028 (1129)
|+ ++++|.||+|||++|+.+++.. . +.+++++...+...+ .++.||||++|++.... ....+..|++.+|.
T Consensus 222 ~~g~~~~i~~D~vi~a~G~~p~~~~l~~-~-l~~~~~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~ 298 (310)
T 1fl2_A 222 VSGDIHNIELAGIFVQIGLLPNTNWLEG-A-VERNRMGEIIIDAKC-ETNVKGVFAAGDCTTVPYKQIIIATGEGAKASL 298 (310)
T ss_dssp TTCCEEEEECSEEEECSCEEESCGGGTT-T-SCBCTTSCBCCCTTC-BCSSTTEEECSTTBSCSSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCEEEEeeCCccCchHHhc-c-ccccCCCcEEcCCCC-ccCCCCEEEeecccCCcchhhhhhHhhHHHHHH
Confidence 54 5799999999999999888865 2 555554433443333 47899999999987643 45677788888877
Q ss_pred HHc
Q psy12350 1029 LMQ 1031 (1129)
Q Consensus 1029 ~l~ 1031 (1129)
.+.
T Consensus 299 ~i~ 301 (310)
T 1fl2_A 299 SAF 301 (310)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-19 Score=217.88 Aligned_cols=275 Identities=16% Similarity=0.228 Sum_probs=174.3
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc----ccccCCCCCCCCCCCCccccccCcccc-----cc-
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG----TWLYTEHIGCDQYGLPVHSSMYKSLKT-----NL- 807 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG----~w~~~~~~g~~~~g~p~~~~~y~~~~~-----~~- 807 (1129)
+.-+++|||+|++|+++|..|++.++..+|+|||+++.+|- ...+. .+.. .+....+...+.. +.
T Consensus 35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~--~g~~---~~~~~~~~~~~~~~~~~~gi~ 109 (588)
T 3ics_A 35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYI--GGVI---TERQKLLVQTVERMSKRFNLD 109 (588)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHH--TTSS---CCGGGGBSSCHHHHHHHTTCE
T ss_pred cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhh--cCcC---CChHHhhccCHHHHHHhcCcE
Confidence 44578999999999999999999954499999999988651 00000 0000 0000000000000 00
Q ss_pred ---cccccccc--C--CCCCC-CCCC--CCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCC-------CCCCC
Q psy12350 808 ---PKDLMELC--G--YGHKG-NADK--SYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPE-------PFAGK 870 (1129)
Q Consensus 808 ---~~~~~~~~--~--~~~~~-~~~~--~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~-------~~~gk 870 (1129)
........ . +.... .... .+.....++.+|+.|+.|++||++++. .++++..+.+.. +..+|
T Consensus 110 v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~-~v~~~~~~~~~~~~~~~l~~~~~~ 188 (588)
T 3ics_A 110 IRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEAK-ALFTLRNVPDTDRIKAYIDEKKPR 188 (588)
T ss_dssp EECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTTCT-TEEECSSHHHHHHHHHHHHHHCCS
T ss_pred EEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCCCCCcccCC-CeEEeCCHHHHHHHHHHHhhcCCC
Confidence 00000000 0 00000 0000 112233445599999999999985444 355555443221 23589
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP 947 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~ 947 (1129)
+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+. +. ..+|+++.+ |++++.
T Consensus 189 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~---------l~---~~GV~i~~~~~v~~i~~ 256 (588)
T 3ics_A 189 HATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEH---------MK---NHDVELVFEDGVDALEE 256 (588)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHH---------HH---HTTCEEECSCCEEEEEG
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccccCCHHHHHHHHHH---------HH---HcCCEEEECCeEEEEec
Confidence 9999999999999999999999999999987655432 22221111111 10 125666654 888876
Q ss_pred --CcEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccc------c-----c
Q psy12350 948 --TGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH------T-----L 1014 (1129)
Q Consensus 948 --~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~------~-----~ 1014 (1129)
++|.+.||+++++|.||+|||++|+.++++. .|+.+++++...+..+ +.++.||||++|++.. + .
T Consensus 257 ~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~-~g~~~~~~g~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~g~~~~~~ 334 (588)
T 3ics_A 257 NGAVVRLKSGSVIQTDMLILAIGVQPESSLAKG-AGLALGVRGTIKVNEK-FQTSDPHIYAIGDAIEVKDFVTETETMIP 334 (588)
T ss_dssp GGTEEEETTSCEEECSEEEECSCEEECCHHHHH-TTCCBCGGGCBCCCTT-SBCSSTTEEECGGGBCEEBTTTCCEECCC
T ss_pred CCCEEEECCCCEEEcCEEEEccCCCCChHHHHh-cCceEcCCCCEEECCc-cccCCCCEEEeeeeeecccccCCcccccc
Confidence 5699999999999999999999999877654 6777766554444333 4458999999999863 1 2
Q ss_pred hhHHHHHHHHHHHHHHcC
Q psy12350 1015 LFNLFDLQVRLFQQLMQG 1032 (1129)
Q Consensus 1015 ~~~~~e~qa~~~a~~l~g 1032 (1129)
..+.+..||+.+|+.+.|
T Consensus 335 ~~~~A~~~g~~aa~~i~g 352 (588)
T 3ics_A 335 LAWPANRQGRMLADIIHG 352 (588)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHhcC
Confidence 457899999999999998
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.8e-19 Score=216.93 Aligned_cols=241 Identities=15% Similarity=0.189 Sum_probs=156.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+||||||||++||..|++ .+++|+|||+++.+||+|.+... + +
T Consensus 372 ~~~~vvIIGgG~AGl~aA~~l~~--~g~~V~lie~~~~~gg~~~~~~~---------------------~-------~-- 419 (671)
T 1ps9_A 372 QKKNLAVVGAGPAGLAFAINAAA--RGHQVTLFDAHSEIGGQFNIAKQ---------------------I-------P-- 419 (671)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSCTTHHHHTT---------------------S-------T--
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCCeeecccc---------------------C-------C--
Confidence 35799999999999999999999 66999999999999998873100 0 0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
......++.+++..+++++++ .+++++.|+..+ . ..|| +||||
T Consensus 420 --------~~~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~~~--------------------~--~~~d-----~lviA 462 (671)
T 1ps9_A 420 --------GKEEFYETLRYYRRMIEVTGV--TLKLNHTVTADQ--------------------L--QAFD-----ETILA 462 (671)
T ss_dssp --------TCTTHHHHHHHHHHHHHHHTC--EEEESCCCCSSS--------------------S--CCSS-----EEEEC
T ss_pred --------CHHHHHHHHHHHHHHHHHcCC--EEEeCcEecHHH--------------------h--hcCC-----EEEEc
Confidence 011234566677777777776 778887664210 0 0588 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| +.|..|++||.....+ .....+ ... . ...
T Consensus 463 tG--~~p~~~~i~G~~~~~v-----------------~~~~~~--------------------------l~~-~---~~~ 493 (671)
T 1ps9_A 463 SG--IVPRTPPIDGIDHPKV-----------------LSYLDV--------------------------LRD-K---APV 493 (671)
T ss_dssp CC--EEECCCCCBTTTSTTE-----------------EEHHHH--------------------------HTS-C---CCC
T ss_pred cC--CCcCCCCCCCCCCCcE-----------------eeHHHH--------------------------hhC-C---CCC
Confidence 99 7888888877321000 000000 000 0 011
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhccccc-------------------------------------EEEEccc
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEAT-------------------------------------TVFLSHH 290 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~-------------------------------------~V~lv~r 290 (1129)
.++++| ||||++|+|+|..|++.|. +|+++++
T Consensus 494 ~~~VvV-----------IGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~ 562 (671)
T 1ps9_A 494 GNKVAI-----------IGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQR 562 (671)
T ss_dssp CSEEEE-----------ECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECS
T ss_pred CCeEEE-----------ECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEe
Confidence 334443 8999999999999998763 5666666
Q ss_pred cCCcccccCC---------------CCeEEcCCceEEcCCceEE-cCC--CEeecCEEEEcccccccCCCCCCCCCeEee
Q psy12350 291 SEHVKKLRFP---------------NNVVKKPDIAELTPTGVRF-QDG--SYEQVDIILYCTGYTYRYPFLHESCGIKVV 352 (1129)
Q Consensus 291 ~~~~~~~~~~---------------~~i~~~~~v~~~~~~~v~~-~dg--~~~~~D~VI~atG~~~~~~~l~~~~~~~~~ 352 (1129)
.+..+...++ -++..+..|++++++++++ .+| +++++|.||+|+|++++..+++. +.
T Consensus 563 ~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~~~G~~~~i~~D~Vi~a~G~~p~~~l~~~---l~-- 637 (671)
T 1ps9_A 563 KASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQEPNRALAQP---LI-- 637 (671)
T ss_dssp SCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCEEECCTTHHH---HH--
T ss_pred cchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeCCeEEEecCCeEEEEeCCEEEECCCccccHHHHHH---HH--
Confidence 5433221111 1345567788998888877 688 56899999999999998777642 10
Q ss_pred cCcccccccccccCCCCCeEEeccccccc---ccccccceeeehhh
Q psy12350 353 NKNVQPLYKHLINIEHPSMCIIGYTYRYP---FLHESCGIKVVNKN 395 (1129)
Q Consensus 353 ~~~~~~l~~~~~~~~~p~l~~~G~~~~~~---~~~~~~~~~~~a~~ 395 (1129)
...+++|.+|....+. ...+.+||..+|.+
T Consensus 638 -------------~~g~~v~aiGD~~~~~~~~~~~A~~~g~~aA~~ 670 (671)
T 1ps9_A 638 -------------DSGKTVHLIGGCDVAMELDARRAIAQGTRLALE 670 (671)
T ss_dssp -------------TTTCCEEECGGGTCCSSCCHHHHHHHHHHHHHH
T ss_pred -------------hcCCCEEEECCcCccCchhHHHHHHHHHHHHHh
Confidence 1235788999775432 22233666665554
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-19 Score=209.86 Aligned_cols=272 Identities=16% Similarity=0.098 Sum_probs=166.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc---CCCCCCCCCCCCccccccCcccccccc-------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY---TEHIGCDQYGLPVHSSMYKSLKTNLPK------- 809 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~---~~~~g~~~~g~p~~~~~y~~~~~~~~~------- 809 (1129)
.+++|||+|++|+++|..|++.|...+|+++|+++..+..... ....+.. . ...+.........+
T Consensus 10 ~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~----~-~~~~~~~~~~~~~~~~i~~~~ 84 (415)
T 3lxd_A 10 ADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREK----T-FERICIRPAQFWEDKAVEMKL 84 (415)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSS----C-SGGGBSSCHHHHHHTTEEEEE
T ss_pred CcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCC----C-HHHhccCCHHHHHHCCcEEEe
Confidence 4689999999999999999999954559999998865532100 0000000 0 00000000000000
Q ss_pred --cccccc--CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCC-----CC-CCeEEEEcCCc
Q psy12350 810 --DLMELC--GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEP-----FA-GKQAVVVGSGQ 879 (1129)
Q Consensus 810 --~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~-----~~-gk~VvVVG~G~ 879 (1129)
...... ...........+.....++.+|+.|+.|++||.+. ..+++.....+... .. +|+|+|||+|.
T Consensus 85 ~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~--~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~ 162 (415)
T 3lxd_A 85 GAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSCVGADL--AGVHAVRTKEDADRLMAELDAGAKNAVVIGGGY 162 (415)
T ss_dssp TCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECCCCBTTSSCC--BTEECCCSHHHHHHHHHHHHTTCCEEEEECCSH
T ss_pred CCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccCCCCCCCccc--cCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCH
Confidence 000000 00000000111222233444999999999999763 23333222211111 12 89999999999
Q ss_pred cHHHHHHHHHhcCCEEEEEecCCCCccc--hhhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEeCC-----cE
Q psy12350 880 SGLDITLDIATTGKQAVVVGSGQSGLDI--TLDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELTPT-----GV 950 (1129)
Q Consensus 880 Sg~eiA~~la~~~~~V~vv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~~~-----~V 950 (1129)
+|+|+|..+++.|.+|+++++.+..++. .+.+.....+.+. ..+|+++. .|++++.+ +|
T Consensus 163 ~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~------------~~GV~i~~~~~v~~i~~~~~~v~~v 230 (415)
T 3lxd_A 163 IGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHR------------AHGVDLRTGAAMDCIEGDGTKVTGV 230 (415)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHH------------HTTCEEEETCCEEEEEESSSBEEEE
T ss_pred HHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHH------------hCCCEEEECCEEEEEEecCCcEEEE
Confidence 9999999999999999999987765431 2222222111111 12566654 48888653 48
Q ss_pred EecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc------------hhHH
Q psy12350 951 RFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL------------LFNL 1018 (1129)
Q Consensus 951 ~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~------------~~~~ 1018 (1129)
+++||+++++|.||+|||++|+.+++.. .|+..++. + .+..+ +.++.||||++|++.... .++.
T Consensus 231 ~l~dG~~i~aD~Vv~a~G~~p~~~l~~~-~gl~~~~g-i-~vd~~-~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~ 306 (415)
T 3lxd_A 231 RMQDGSVIPADIVIVGIGIVPCVGALIS-AGASGGNG-V-DVDEF-CRTSLTDVYAIGDCAAHANDFADGAVIRLESVQN 306 (415)
T ss_dssp EESSSCEEECSEEEECSCCEESCHHHHH-TTCCCSSS-E-ECCTT-CBCSSTTEEECGGGEEEECGGGTTCEECCCSHHH
T ss_pred EeCCCCEEEcCEEEECCCCccChHHHHh-CCCCcCCC-E-EECCC-CCcCCCCEEEEEeeeeecCcccCCcceeechHHH
Confidence 8899999999999999999999877654 56666633 2 23322 345899999999986532 2589
Q ss_pred HHHHHHHHHHHHcCCC
Q psy12350 1019 FDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 1019 ~e~qa~~~a~~l~g~~ 1034 (1129)
+..||+.+|+.+.|+.
T Consensus 307 A~~qg~~aa~~i~g~~ 322 (415)
T 3lxd_A 307 ANDMATAAAKDICGAP 322 (415)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999999864
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-19 Score=212.48 Aligned_cols=276 Identities=16% Similarity=0.161 Sum_probs=165.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc-cCCCCCCCCCCCCccccc-------cCc---cc--cc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL-YTEHIGCDQYGLPVHSSM-------YKS---LK--TN 806 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~-~~~~~g~~~~g~p~~~~~-------y~~---~~--~~ 806 (1129)
-+++|||+|++|+++|..|++.++..+|+|||+++.++..-. ...+.+. ..+..... +.. +. .+
T Consensus 4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (472)
T 3iwa_A 4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSG---EVSNIESLQATPYNVVRDPEFFRINKD 80 (472)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----------------------------------------------
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcC---CCCchHHhccccchhccCHHHHhhhcC
Confidence 468999999999999999999944499999999987641100 0000000 00000000 000 00 00
Q ss_pred ----ccccccccc--C--CCCCC-CCCC--CCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCC-------CCC
Q psy12350 807 ----LPKDLMELC--G--YGHKG-NADK--SYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPE-------PFA 868 (1129)
Q Consensus 807 ----~~~~~~~~~--~--~~~~~-~~~~--~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~-------~~~ 868 (1129)
......... . +.... .... .+.....++.+|+.|+.|++||.+. ..+++...+.+.. ...
T Consensus 81 i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~--~~v~~~~~~~~~~~l~~~l~~~~ 158 (472)
T 3iwa_A 81 VEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMDL--AGVTPVTNLDEAEFVQHAISAGE 158 (472)
T ss_dssp CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSCTTTTS--BTEEECCSHHHHHHHHHHCCTTS
T ss_pred cEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCCCCCCC--CCEEEeCCHHHHHHHHHHhhcCC
Confidence 000000000 0 00000 0000 1222333445999999999999862 3455544332211 134
Q ss_pred CCeEEEEcCCccHHHHHHHHHhc-CCEEEEEecCCCCcc-c-hhhhhccccEEEEecCCccccccCCCCCeEEcCC--ee
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATT-GKQAVVVGSGQSGLD-I-TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VA 943 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~-~~~V~vv~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~ 943 (1129)
+|+|+|||+|.+|+|+|..+++. +.+|+++++.+..++ . .+.+.....+.+. ..+|+++.+ |+
T Consensus 159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~------------~~GV~i~~~~~v~ 226 (472)
T 3iwa_A 159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLE------------KNDVVVHTGEKVV 226 (472)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHH------------HTTCEEECSCCEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHH------------hcCCEEEeCCEEE
Confidence 79999999999999999999999 999999998776554 2 2222221111110 125666654 88
Q ss_pred EEeC-Cc---EEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc------
Q psy12350 944 ELTP-TG---VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT------ 1013 (1129)
Q Consensus 944 ~v~~-~~---V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~------ 1013 (1129)
+++. ++ +++.||+++++|.||+|||++|+.+++.. .|+++++++...+..+ +.++.||||++|++...
T Consensus 227 ~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~-~gl~~~~~g~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~g 304 (472)
T 3iwa_A 227 RLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARD-AGLELDPRGAIIVDTR-MRTSDPDIFAGGDCVTIPNLVTG 304 (472)
T ss_dssp EEEESSSBEEEEEESSCEEECSEEEECSCEEECCHHHHH-HTCCBCTTCCEECCTT-CBCSSTTEEECGGGEEEEBTTTS
T ss_pred EEEccCCeEEEEEeCCCEEEcCEEEECCCCCcCHHHHHh-CCccCCCCCCEEECCC-cccCCCCEEEeccceecccccCC
Confidence 8865 33 67889999999999999999999776543 6777766554333333 34589999999998621
Q ss_pred -----chhHHHHHHHHHHHHHHcCCC
Q psy12350 1014 -----LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 1014 -----~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
...+.+..||+.+|+.+.|..
T Consensus 305 ~~~~~~~~~~A~~~g~~aa~~i~g~~ 330 (472)
T 3iwa_A 305 KPGFFPLGSMANRQGRVIGTNLADGD 330 (472)
T ss_dssp SEECCCCTTHHHHHHHHHHHHHTTCC
T ss_pred ceeecchHHHHHHHHHHHHHHhcCCC
Confidence 245789999999999999853
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-19 Score=209.78 Aligned_cols=110 Identities=15% Similarity=0.140 Sum_probs=76.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.+++|+||||||||++||..|++.+++++|+|||+.+.+||.|.+.-. +
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~-----------------------------p-- 53 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVA-----------------------------P-- 53 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSC-----------------------------T--
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccC-----------------------------C--
Confidence 357999999999999999999996555999999999999998874100 1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
.++...++..++.++++++++ .+++++.|. + .+++ .. ....|| +||+|
T Consensus 54 --------~~~~~~~~~~~~~~~~~~~gv--~~~~~~~v~---~--------~V~~---~~---~~~~~d-----~lVlA 101 (460)
T 1cjc_A 54 --------DHPEVKNVINTFTQTARSDRC--AFYGNVEVG---R--------DVTV---QE---LQDAYH-----AVVLS 101 (460)
T ss_dssp --------TCGGGGGHHHHHHHHHTSTTE--EEEBSCCBT---T--------TBCH---HH---HHHHSS-----EEEEC
T ss_pred --------CCccHHHHHHHHHHHHHhCCc--EEEeeeEEe---e--------EEEe---cc---ceEEcC-----EEEEe
Confidence 112233567778888888766 677776652 1 1111 11 124689 99999
Q ss_pred cccCCCC-Cccccccc
Q psy12350 168 QGHVTLP-SKAEMLAD 182 (1129)
Q Consensus 168 tG~~~~p-~~p~i~g~ 182 (1129)
|| +.| ..|++||.
T Consensus 102 tG--s~~~~~~~ipG~ 115 (460)
T 1cjc_A 102 YG--AEDHQALDIPGE 115 (460)
T ss_dssp CC--CCEECCCCCTTT
T ss_pred cC--cCCCCCCCCCCC
Confidence 99 554 67778773
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-20 Score=212.11 Aligned_cols=261 Identities=12% Similarity=0.091 Sum_probs=162.0
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc-ccCC-CCCCCCCCCCccccccCcccc-----cc---
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW-LYTE-HIGCDQYGLPVHSSMYKSLKT-----NL--- 807 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w-~~~~-~~g~~~~g~p~~~~~y~~~~~-----~~--- 807 (1129)
..-.++|||+|++|+++|..|...+ .+|+|||+++..+..- .... ..+. .+ ...++..... +.
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~--~~itlie~~~~~~y~~~~l~~~l~g~----~~-~~~l~~~~~~~~~~~~i~~~ 80 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKC--DDITMINSEKYLPYYRPRLNEIIAKN----KS-IDDILIKKNDWYEKNNIKVI 80 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTC--SCEEEECSSSSCCBCGGGHHHHHHSC----CC-GGGTBSSCHHHHHHTTCEEE
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCC--CEEEEEECCCCCCcccChhhHHHcCC----CC-HHHccCCCHHHHHHCCCEEE
Confidence 3456899999999999999995555 9999999998765200 0000 0000 00 0000000000 00
Q ss_pred -cccccccc--CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCC-----CCeEEEEcCCc
Q psy12350 808 -PKDLMELC--GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFA-----GKQAVVVGSGQ 879 (1129)
Q Consensus 808 -~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~-----gk~VvVVG~G~ 879 (1129)
........ ...+.......+....-++.+|+.|+.|++||.+ .+++...+.+...++ +|+|+|||+|.
T Consensus 81 ~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i~G~~----~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~ 156 (385)
T 3klj_A 81 TSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHAD----EIFSLYSYDDALKIKDECKNKGKAFIIGGGI 156 (385)
T ss_dssp CSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTCS----CEECCSSHHHHHHHHHHHHHHSCEEEECCSH
T ss_pred eCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCCCCCCCCC----CeEEeCCHHHHHHHHHHhhcCCeEEEECCCH
Confidence 00000000 0000000011222334445599999999999986 455555444333232 79999999999
Q ss_pred cHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCcEEecCC
Q psy12350 880 SGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTGVRFQDG 955 (1129)
Q Consensus 880 Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~V~~~dG 955 (1129)
+|+|+|..|++.|.+||++++.+..++ +.+.......+. +. ..+|+++.+ ++++ |
T Consensus 157 ~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~---------l~---~~gV~~~~~~~v~~i---------g 215 (385)
T 3klj_A 157 LGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDK---------LD---RLGIKIYTNSNFEEM---------G 215 (385)
T ss_dssp HHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHH---------HH---TTTCEEECSCCGGGC---------H
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHH---------HH---hCCCEEEeCCEEEEc---------C
Confidence 999999999999999999998776554 222222222111 10 125666543 4444 6
Q ss_pred cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccc-----cchhHHHHHHHHHHHHHH
Q psy12350 956 SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH-----TLLFNLFDLQVRLFQQLM 1030 (1129)
Q Consensus 956 ~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~-----~~~~~~~e~qa~~~a~~l 1030 (1129)
+++++|.||+|||++|+.+++.. .|+..++. + .+.. .+.++.||||++|++.. ...+..+..||+.+|+.+
T Consensus 216 ~~~~~D~vv~a~G~~p~~~~~~~-~gl~~~~g-i-~vd~-~~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i 291 (385)
T 3klj_A 216 DLIRSSCVITAVGVKPNLDFIKD-TEIASKRG-I-LVND-HMETSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNA 291 (385)
T ss_dssp HHHHHSEEEECCCEEECCGGGTT-SCCCBSSS-E-EECT-TCBCSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHH
T ss_pred eEEecCeEEECcCcccChhhhhh-cCCCcCCC-E-EECC-CcccCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHh
Confidence 77899999999999999888765 67777643 2 2322 23458999999999875 346789999999999999
Q ss_pred cCCC
Q psy12350 1031 QGHI 1034 (1129)
Q Consensus 1031 ~g~~ 1034 (1129)
.|..
T Consensus 292 ~g~~ 295 (385)
T 3klj_A 292 CGED 295 (385)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 9864
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-19 Score=210.88 Aligned_cols=272 Identities=20% Similarity=0.238 Sum_probs=173.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCc-cccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPV-HSSM 799 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~-~~~~ 799 (1129)
.+++|||+|++|+++|..|++.| .+|+|+|+++ +||+|... ||-+ +|++. ....
T Consensus 7 ~dvvIIG~G~aG~~aA~~l~~~g--~~V~lie~~~-~GG~~~~~---g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 80 (464)
T 2eq6_A 7 YDLIVIGTGPGGYHAAIRAAQLG--LKVLAVEAGE-VGGVCLNV---GCIPTKALLHAAETLHHLKVAEGFGLKAKPELD 80 (464)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC-TTHHHHHT---SHHHHHHHHHHHHHHHHHHHHGGGTEECCCEEC
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCC-CCCCCCCc---ChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcC
Confidence 46899999999999999999999 9999999977 99999742 2210 01100 0000
Q ss_pred cCcccccc----------ccccccccCCCCCC-------CC-----CCCCCChhhhhhccCCCCCCC-CCCCCCCCCcEE
Q psy12350 800 YKSLKTNL----------PKDLMELCGYGHKG-------NA-----DKSYIGAKDVLENYNHPIYPE-FKGKDMCQIPIL 856 (1129)
Q Consensus 800 y~~~~~~~----------~~~~~~~~~~~~~~-------~~-----~~~~~~~~~v~~~~~~P~~P~-i~G~~~f~g~~~ 856 (1129)
+..+.... ......-.+..+-. .. ...+....-++.+|+.|+.|+ ++| + +.++
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~g~~~~~d~lViATGs~p~~p~gi~~-~---~~v~ 156 (464)
T 2eq6_A 81 LKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVGGERYGAKSLILATGSEPLELKGFPF-G---EDVW 156 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTEEEEEEEEEECCCEEECCBTTBCC-S---SSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEEccEEEEeCEEEEcCCCCCCCCCCCCC-C---CcEE
Confidence 00000000 00000000000000 00 000111222333999999987 776 2 2578
Q ss_pred eeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCCCC
Q psy12350 857 HSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLPNN 935 (1129)
Q Consensus 857 hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1129)
++.++.+..+..+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+. +. ..+
T Consensus 157 ~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~---------l~---~~g 224 (464)
T 2eq6_A 157 DSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRA---------LE---KEG 224 (464)
T ss_dssp CHHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHH---------HH---HTT
T ss_pred cHHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHH---------HH---hcC
Confidence 887776655545799999999999999999999999999999987765432 12222111111 11 125
Q ss_pred eEEcCC--eeEEeCC--c--EEec-C--Cc--EeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCC
Q psy12350 936 VVLKPD--VAELTPT--G--VRFQ-D--GS--YEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPT 1003 (1129)
Q Consensus 936 V~~~~~--i~~v~~~--~--V~~~-d--G~--~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~ 1003 (1129)
|+++.+ +.+++.+ + |++. + |+ ++++|.||+|+|++|+.+++. +..|+.+++++...+..+ +.++.||
T Consensus 225 V~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~ 303 (464)
T 2eq6_A 225 IRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNAR-METSVPG 303 (464)
T ss_dssp CEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTT-CBCSSTT
T ss_pred CEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCC-cccCCCC
Confidence 776655 7777542 2 5665 7 87 789999999999999988753 335677755443334333 3468999
Q ss_pred cEEEcccccc-chhHHHHHHHHHHHHHHcCCC
Q psy12350 1004 MFILGVPRHT-LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 1004 l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
||++|++... ...+.+..||+.+|..+.|..
T Consensus 304 Iya~GD~~~~~~l~~~A~~~g~~aa~~i~g~~ 335 (464)
T 2eq6_A 304 VYAIGDAARPPLLAHKAMREGLIAAENAAGKD 335 (464)
T ss_dssp EEECGGGTCSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEeccCCCcccHHHHHHHHHHHHHHhcCCC
Confidence 9999999764 356889999999999998753
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.8e-19 Score=210.45 Aligned_cols=271 Identities=15% Similarity=0.184 Sum_probs=172.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCC--------------------CCCCCccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCD--------------------QYGLPVHS-- 797 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~--------------------~~g~p~~~-- 797 (1129)
.+++|||+|++|+++|..|++.| ++|+|+|+++.+||+|... ||. .+|++...
T Consensus 6 ~dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~GG~~~~~---g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~ 80 (478)
T 1v59_A 6 HDVVIIGGGPAGYVAAIKAAQLG--FNTACVEKRGKLGGTCLNV---GCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDI 80 (478)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHH---SHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCE
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCcCCcccee---ccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC
Confidence 47899999999999999999999 9999999999999998642 210 01111100
Q ss_pred -cccCcc-------------------cc-cc--ccccccccC---CCCCCCCC--CC------CCChhhhhhccCCCCCC
Q psy12350 798 -SMYKSL-------------------KT-NL--PKDLMELCG---YGHKGNAD--KS------YIGAKDVLENYNHPIYP 843 (1129)
Q Consensus 798 -~~y~~~-------------------~~-~~--~~~~~~~~~---~~~~~~~~--~~------~~~~~~v~~~~~~P~~P 843 (1129)
..+..+ .. +. -.....+.+ +....... .. +.....++.+|+.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~-- 158 (478)
T 1v59_A 81 KINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVT-- 158 (478)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEEC--
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCC--
Confidence 000000 00 00 000000000 00000000 11 222233344888883
Q ss_pred CCCCCCCCCC-cEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEe
Q psy12350 844 EFKGKDMCQI-PILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLS 921 (1129)
Q Consensus 844 ~i~G~~~f~g-~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~ 921 (1129)
.+||.+ +.+ .++|+.++..... .+|+|+|||+|.+|+|+|..|++.|.+||++++.+..++. .+.+.....+.+
T Consensus 159 ~~~g~~-~~~~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l-- 234 (478)
T 1v59_A 159 PFPGIE-IDEEKIVSSTGALSLKE-IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFL-- 234 (478)
T ss_dssp CCTTCC-CCSSSEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHH--
T ss_pred CCCCCC-CCCceEEcHHHHHhhhc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccccCHHHHHHHHHHH--
Confidence 567765 344 5777777665544 3799999999999999999999999999999987765542 222222111111
Q ss_pred cCCccccccCCCCCeEEcCC--eeEEeC--C----cEEec-----CCcEeeccEEEEccCccCcCC--CCCCCCCeeecC
Q psy12350 922 HHSERVTSLCLPNNVVLKPD--VAELTP--T----GVRFQ-----DGSYEQVDIILCCTGYSNHYP--FLHESCGIKVVN 986 (1129)
Q Consensus 922 ~~~~~~~~~~~~~~V~~~~~--i~~v~~--~----~V~~~-----dG~~~~~D~VI~aTG~~~~~~--fl~~~~g~~~~~ 986 (1129)
. ..+|+++.+ |.+++. + .|.+. +|+++++|.||+|+|++|+.+ ++.. .|+++++
T Consensus 235 -------~---~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~-~g~~~~~ 303 (478)
T 1v59_A 235 -------K---KQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEK-IGLEVDK 303 (478)
T ss_dssp -------H---HTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTT-TTCCBCT
T ss_pred -------H---HCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchh-cCceeCC
Confidence 0 125677654 777764 2 25555 456789999999999999987 4544 7888775
Q ss_pred CcccccccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 987 KNVQPLYKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 987 ~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
++...+..+ +.++.||||++|++... ...+.+..||+.+|+.+.|.
T Consensus 304 ~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 350 (478)
T 1v59_A 304 RGRLVIDDQ-FNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTG 350 (478)
T ss_dssp TSCBCCCTT-SBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred CCCEeECcC-CccCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 553344443 34689999999999764 35689999999999999864
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-18 Score=207.50 Aligned_cols=271 Identities=15% Similarity=0.183 Sum_probs=173.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCC-------------------CC-CCCcccc-
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCD-------------------QY-GLPVHSS- 798 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~-------------------~~-g~p~~~~- 798 (1129)
.+++|||+|++|+++|.+|++.| .+|+|||++ .+||+|.+. ||- .+ |++....
T Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g--~~V~lie~~-~~GG~~~~~---g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~ 78 (467)
T 1zk7_A 5 VQVAVIGSGGAAMAAALKAVEQG--AQVTLIERG-TIGGTCVNV---GCVPSKIMIRAAHIAHLRRESPFDGGIAATVPT 78 (467)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESS-STTHHHHHH---SHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCC
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CEEEEEeCC-CCCccccCC---CccchHHHHHHHHHHHHHhhhhhcCCccCCCCc
Confidence 46899999999999999999999 999999997 799999732 220 00 1211000
Q ss_pred -ccCccccc------------cccccccccCCCC--------CCC-------CC--CCCCChhhhhhccCCCCCCCCCCC
Q psy12350 799 -MYKSLKTN------------LPKDLMELCGYGH--------KGN-------AD--KSYIGAKDVLENYNHPIYPEFKGK 848 (1129)
Q Consensus 799 -~y~~~~~~------------~~~~~~~~~~~~~--------~~~-------~~--~~~~~~~~v~~~~~~P~~P~i~G~ 848 (1129)
.+..+... ....+....+..+ ... .. ..+.....++.+|+.|+.|++||+
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~G~ 158 (467)
T 1zk7_A 79 IDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGL 158 (467)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCCCTTT
T ss_pred cCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCCCCC
Confidence 00000000 0000000000000 000 00 112222334449999999999998
Q ss_pred CCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCcccc
Q psy12350 849 DMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVT 928 (1129)
Q Consensus 849 ~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1129)
+.+ .++++.+..+... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..+++.+.+.....+.+.
T Consensus 159 ~~~--~~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~l~~~l~-------- 227 (467)
T 1zk7_A 159 KES--PYWTSTEALASDT-IPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFREDPAIGEAVTAAFR-------- 227 (467)
T ss_dssp TTS--CCBCHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTSCHHHHHHHHHHHH--------
T ss_pred CcC--ceecHHHHhcccc-cCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCCCCHHHHHHHHHHHH--------
Confidence 653 3456555544333 48999999999999999999999999999999887666533322222211111
Q ss_pred ccCCCCCeEEcCC--eeEEeCCc----EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCC
Q psy12350 929 SLCLPNNVVLKPD--VAELTPTG----VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEH 1001 (1129)
Q Consensus 929 ~~~~~~~V~~~~~--i~~v~~~~----V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~ 1001 (1129)
..+|+++.+ |.+++.++ |.++ +.++++|.||+|||++|+.+++. +..|+++++++...+..+ +.++.
T Consensus 228 ----~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~-~~t~~ 301 (467)
T 1zk7_A 228 ----AEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQG-MRTSN 301 (467)
T ss_dssp ----HTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTT-CBCSS
T ss_pred ----hCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCC-cccCC
Confidence 125666653 77775422 4554 56789999999999999987653 346777765553334333 34689
Q ss_pred CCcEEEccccccc-hhHHHHHHHHHHHHHHcCC
Q psy12350 1002 PTMFILGVPRHTL-LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1002 p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~ 1033 (1129)
|+||++|++.... ..+.+..||+.+|..+.|.
T Consensus 302 ~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 334 (467)
T 1zk7_A 302 PNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG 334 (467)
T ss_dssp TTEEECSTTBSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 9999999987653 5688999999999998764
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.6e-19 Score=209.61 Aligned_cols=270 Identities=15% Similarity=0.225 Sum_probs=172.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCC--------------------CCCCCCcc-cc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGC--------------------DQYGLPVH-SS 798 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~--------------------~~~g~p~~-~~ 798 (1129)
.+++|||+|++|+++|..|++.| ++|+|+|++ .+||+|... +| ..+|++.. ..
T Consensus 4 ~dvvIIGaG~aGl~aA~~l~~~G--~~V~liE~~-~~gG~~~~~---g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~ 77 (464)
T 2a8x_A 4 YDVVVLGAGPGGYVAAIRAAQLG--LSTAIVEPK-YWGGVCLNV---GCIPSKALLRNAELVHIFTKDAKAFGISGEVTF 77 (464)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSS-CTTHHHHHH---SHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCC-CCCCccccc---CchhhHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 46899999999999999999999 999999997 799998632 11 00111100 00
Q ss_pred ccCcc-------------------cc-ccc--cccccccC---CCCCCCCC--CCCCChhhhhhccCCCCCCCCCCCCCC
Q psy12350 799 MYKSL-------------------KT-NLP--KDLMELCG---YGHKGNAD--KSYIGAKDVLENYNHPIYPEFKGKDMC 851 (1129)
Q Consensus 799 ~y~~~-------------------~~-~~~--~~~~~~~~---~~~~~~~~--~~~~~~~~v~~~~~~P~~P~i~G~~~f 851 (1129)
.+..+ .. +.. .....+.+ ........ ..+.....++.+|+.|+.|+++|.+.
T Consensus 78 ~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~~g~~~- 156 (464)
T 2a8x_A 78 DYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSA- 156 (464)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTTCCCBT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCc-
Confidence 00000 00 000 00000000 00000000 01111222334999999999999764
Q ss_pred CCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCcccccc
Q psy12350 852 QIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSL 930 (1129)
Q Consensus 852 ~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 930 (1129)
.++++.+...... .+|+|+|||+|.+|+|+|..|++.|.+||++++.+..++. .+.+.....+.+.
T Consensus 157 --~~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~---------- 223 (464)
T 2a8x_A 157 --NVVTYEEQILSRE-LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFK---------- 223 (464)
T ss_dssp --TEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHH----------
T ss_pred --eEEecHHHhhccc-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHH----------
Confidence 3777766554433 4799999999999999999999999999999988765542 2222221111110
Q ss_pred CCCCCeEEcCC--eeEEeCCc----EEec-CC--cEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecC
Q psy12350 931 CLPNNVVLKPD--VAELTPTG----VRFQ-DG--SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIE 1000 (1129)
Q Consensus 931 ~~~~~V~~~~~--i~~v~~~~----V~~~-dG--~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~ 1000 (1129)
..+|+++.+ +.++++++ +.+. +| +++++|.||+|||++|+.++|. +..|+.+++++...+..+ +.++
T Consensus 224 --~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~-~~t~ 300 (464)
T 2a8x_A 224 --KLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDY-MRTN 300 (464)
T ss_dssp --HHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTT-SBCS
T ss_pred --HcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcC-CccC
Confidence 115666654 77776432 4454 67 5789999999999999988753 335777765443334433 3468
Q ss_pred CCCcEEEcccccc-chhHHHHHHHHHHHHHHcC
Q psy12350 1001 HPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQG 1032 (1129)
Q Consensus 1001 ~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g 1032 (1129)
.||||++|++... ...+.+..||+.+|+.+.|
T Consensus 301 ~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 333 (464)
T 2a8x_A 301 VGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAG 333 (464)
T ss_dssp STTEEECGGGGCSSCSHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEeECcCCCccCHHHHHHHHHHHHHHhcC
Confidence 9999999999764 3568899999999999988
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.9e-19 Score=208.24 Aligned_cols=271 Identities=20% Similarity=0.276 Sum_probs=172.7
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCcccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPVHSS-- 798 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~~~~-- 798 (1129)
.+++|||+|++|+++|..|++.| ++|+|+|++ .+||+|... +|-+ +|++....
T Consensus 4 ~dvvIIGgG~aGl~aA~~l~~~g--~~V~lie~~-~~gG~~~~~---g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 77 (455)
T 1ebd_A 4 TETLVVGAGPGGYVAAIRAAQLG--QKVTIVEKG-NLGGVCLNV---GCIPSKALISASHRYEQAKHSEEMGIKAENVTI 77 (455)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTHHHHHT---SHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEECC-CCCCcCcCc---CchhhHHHHHHHHHHHHHHHHHhcCcccCCCcc
Confidence 46899999999999999999999 999999997 899998632 2210 01110000
Q ss_pred ccCccccc-------cc---cccccccCCC--------CCCC-------CC-CCCCChhhhhhccCCCCCCCCCCCCCCC
Q psy12350 799 MYKSLKTN-------LP---KDLMELCGYG--------HKGN-------AD-KSYIGAKDVLENYNHPIYPEFKGKDMCQ 852 (1129)
Q Consensus 799 ~y~~~~~~-------~~---~~~~~~~~~~--------~~~~-------~~-~~~~~~~~v~~~~~~P~~P~i~G~~~f~ 852 (1129)
-+..+... .. .....-.... .... .. ..+....-++.+|+.|..|+++|.+.
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~~g~~~-- 155 (455)
T 1ebd_A 78 DFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSN-- 155 (455)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBTTBCCCS--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCCCCccc--
Confidence 00000000 00 0000000000 0000 00 01112223334999999999999754
Q ss_pred CcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccC
Q psy12350 853 IPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLC 931 (1129)
Q Consensus 853 g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1129)
.++++.+...... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+. +.
T Consensus 156 -~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~---------l~-- 222 (455)
T 1ebd_A 156 -RILDSTGALNLGE-VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKR---------LK-- 222 (455)
T ss_dssp -SEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHH---------HH--
T ss_pred -eEecHHHHhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccccCHHHHHHHHHH---------HH--
Confidence 4777766554433 4799999999999999999999999999999987665432 22221111111 11
Q ss_pred CCCCeEEcCC--eeEEeCC--c--EEec---CCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCC
Q psy12350 932 LPNNVVLKPD--VAELTPT--G--VRFQ---DGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEH 1001 (1129)
Q Consensus 932 ~~~~V~~~~~--i~~v~~~--~--V~~~---dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~ 1001 (1129)
..+|+++.+ |.+++++ + +.+. +|+++++|.||+|+|++|+.++|. +..|+++++++...+..+ +.++.
T Consensus 223 -~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~-~~t~~ 300 (455)
T 1ebd_A 223 -KKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQ-CRTSV 300 (455)
T ss_dssp -HTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTT-CBCSS
T ss_pred -HCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCC-cccCC
Confidence 125666554 7777642 2 3443 456789999999999999988853 447888776543344433 34689
Q ss_pred CCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1002 PTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1002 p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
||||++|++... ...+.+..||+.+|+.+.|.
T Consensus 301 ~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 333 (455)
T 1ebd_A 301 PNIFAIGDIVPGPALAHKASYEGKVAAEAIAGH 333 (455)
T ss_dssp TTEEECGGGSSSCCCHHHHHHHHHHHHHHHTSC
T ss_pred CCEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 999999999765 34688999999999999875
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-19 Score=222.30 Aligned_cols=261 Identities=13% Similarity=0.138 Sum_probs=159.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||..|++ .|++|+|||+++.+||+|.+.. .++
T Consensus 388 ~~~~VvIIGgGpAGl~aA~~L~~--~G~~Vtlie~~~~~GG~~~~~~--------------~~p---------------- 435 (729)
T 1o94_A 388 NKDSVLIVGAGPSGSEAARVLME--SGYTVHLTDTAEKIGGHLNQVA--------------ALP---------------- 435 (729)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSTTTTHHHHT--------------TST----------------
T ss_pred CCceEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcCCeeeecc--------------cCC----------------
Confidence 45799999999999999999999 5699999999999999998411 000
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcC----CcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFN----LRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~----~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 163 (1129)
.+.....+.+|++..++.+. ....++.++.|+ ........|| +
T Consensus 436 --------g~~~~~~~~~~~~~~i~~~~~~~~~~v~i~~~~~v~--------------------~~~~~~~~~d-----~ 482 (729)
T 1o94_A 436 --------GLGEWSYHRDYRETQITKLLKKNKESQLALGQKPMT--------------------ADDVLQYGAD-----K 482 (729)
T ss_dssp --------TCGGGHHHHHHHHHHHHHHHHHSTTCEEECSCCCCC--------------------HHHHHTSCCS-----E
T ss_pred --------ChHHHHHHHHHHHHHHHHhhcccCCceEEEeCeEEe--------------------hhhccccCCC-----E
Confidence 01122355666665555430 001222222211 1111234689 9
Q ss_pred EEEecccCCC------CCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccc
Q psy12350 164 LQLMQGHVTL------PSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFA 237 (1129)
Q Consensus 164 lvvAtG~~~~------p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 237 (1129)
||||||.... |..|++||..+. . .+.++.. .+.
T Consensus 483 vviAtG~~~~~~~~~~p~~~~ipG~~~~-~---------------~~v~~~~-------------------------~~l 521 (729)
T 1o94_A 483 VIIATGARWNTDGTNCLTHDPIPGADAS-L---------------PDQLTPE-------------------------QVM 521 (729)
T ss_dssp EEECCCEEECSSCCCTTTSSCCTTCCTT-S---------------TTEECHH-------------------------HHH
T ss_pred EEEcCCCCcccccccCccCCCCCCcccc-C---------------CCEEEHH-------------------------HHh
Confidence 9999994321 566777663200 0 0000000 000
Q ss_pred ccccccccccccceeEeeceeeeecCCCC--CCCCcccchhhhcccccEEEEccccCCcccc-cCC------------C-
Q psy12350 238 RCSEDFTEFRKDKYKIINEKAFVRDPGAA--NGPSGLDITHDISTEATTVFLSHHSEHVKKL-RFP------------N- 301 (1129)
Q Consensus 238 ~~~~~~~~~~~~~~~vi~~~~~v~~~~vG--gG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~-~~~------------~- 301 (1129)
. .. ...+++++| || ||++|+|+|..|++.|.+||++++.+ +++. ..+ .
T Consensus 522 ~-~~---~~~gk~VvV-----------IG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~~~~~~~~l~~~G 585 (729)
T 1o94_A 522 D-GK---KKIGKRVVI-----------LNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLEYPNMMRRLHELH 585 (729)
T ss_dssp H-CC---SCCCSEEEE-----------EECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTCHHHHHHHHHHTT
T ss_pred c-CC---CCCCCeEEE-----------EcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccccccccccHHHHHHHHHhCC
Confidence 0 00 011334444 78 99999999999999999999999987 4331 011 1
Q ss_pred -CeEEcCCceEEcCCceEEc----CC-CE------------------eecCEEEEcccccccCCCCCCCCCeEeecCccc
Q psy12350 302 -NVVKKPDIAELTPTGVRFQ----DG-SY------------------EQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQ 357 (1129)
Q Consensus 302 -~i~~~~~v~~~~~~~v~~~----dg-~~------------------~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~ 357 (1129)
++.....|++++++++.+. ++ ++ +++|.||+|+|++++..++.. +...+
T Consensus 586 V~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~-l~~~v------ 658 (729)
T 1o94_A 586 VEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNE-LKARE------ 658 (729)
T ss_dssp CEEECSEEEEEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHH-HHHTG------
T ss_pred CEEEcCcEEEEEECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHHH-Hhhhc------
Confidence 3455667888887765542 33 22 899999999999999887642 21111
Q ss_pred ccccccccCCCCCeEEeccccccc-ccccccceeeehhhccccc
Q psy12350 358 PLYKHLINIEHPSMCIIGYTYRYP-FLHESCGIKVVNKNVQPLY 400 (1129)
Q Consensus 358 ~l~~~~~~~~~p~l~~~G~~~~~~-~~~~~~~~~~~a~~~~~~~ 400 (1129)
+-+. .++.|++|.+|...... ...+..||+.+|.++.+.+
T Consensus 659 d~~~---~t~~~~VyAiGD~~~~~~~~~A~~~G~~aA~~i~~~l 699 (729)
T 1o94_A 659 SEWA---ENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEAN 699 (729)
T ss_dssp GGTG---GGTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSC
T ss_pred cccc---ccCCCCeEEEeCccchhhHHHHHHHHHHHHHHhhhhc
Confidence 1222 24678999999875432 2334488888888886543
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-18 Score=221.01 Aligned_cols=284 Identities=12% Similarity=0.106 Sum_probs=176.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+|||||||||+||.+|++ .|++|+|||+++.+||+|.+. ++.. +..
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~--~G~~V~lie~~~~~GG~~~~~------------------------~k~~--i~~-- 177 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASR--SGARVMLLDERAEAGGTLLDT------------------------AGEQ--IDG-- 177 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSSGGGGGS------------------------SCCE--ETT--
T ss_pred CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCCCCCceeccC------------------------Cccc--cCC--
Confidence 4789999999999999999999 569999999999999998830 0000 000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhc-CCcceeEeceeeeeecccccc------CCCCceEEec-cccCccceEEeccee
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNF-NLRNLCLVNKNVQPLYKHLIN------IEHPSMCIIG-IPRDTVGFYLFDLQV 160 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~------~~~~~~~~~~-~~~~~~~~~~~d~~~ 160 (1129)
. ...++...+.+...++ ++ .++++++|..+...... .+.+.+.... ...+....+.||
T Consensus 178 --------~-~~~~~~~~~~~~l~~~~~v--~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d--- 243 (965)
T 2gag_A 178 --------M-DSSAWIEQVTSELAEAEET--THLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAK--- 243 (965)
T ss_dssp --------E-EHHHHHHHHHHHHHHSTTE--EEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEE---
T ss_pred --------C-CHHHHHHHHHHHHhhcCCc--EEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECC---
Confidence 0 1223344433333443 44 67888899887642100 0001110000 000112356788
Q ss_pred eeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccc
Q psy12350 161 RFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCS 240 (1129)
Q Consensus 161 ~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 240 (1129)
+|||||| +.|..|++||... +| .....- +......
T Consensus 244 --~lVlATG--s~p~~~~ipG~~~---~g---------------v~~~~~----------------------~~~~l~~- 278 (965)
T 2gag_A 244 --QVVLATG--AHERPIVFENNDR---PG---------------IMLAGA----------------------VRSYLNR- 278 (965)
T ss_dssp --EEEECCC--EEECCCCCBTCCS---TT---------------EEEHHH----------------------HHHHHHT-
T ss_pred --EEEECCC--CccCCCCCCCCCC---CC---------------EEEhHH----------------------HHHHHHh-
Confidence 9999999 6788888877321 11 111000 0000000
Q ss_pred cccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc-----cCCCCeEEcCCceEEcC-
Q psy12350 241 EDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL-----RFPNNVVKKPDIAELTP- 314 (1129)
Q Consensus 241 ~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~-----~~~~~i~~~~~v~~~~~- 314 (1129)
+....++++ +| ||+|++|+|+|..|++.|.+|+++++.+.++.. ...-++.....|+++.+
T Consensus 279 --~~~~~gk~v-------vV----iGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~ 345 (965)
T 2gag_A 279 --YGVRAGARI-------AV----ATTNDSAYELVRELAATGGVVAVIDARSSISAAAAQAVADGVQVISGSVVVDTEAD 345 (965)
T ss_dssp --TCEESCSSE-------EE----EESSTTHHHHHHHHGGGTCCSEEEESCSSCCHHHHHHHHTTCCEEETEEEEEEEEC
T ss_pred --cCCCCCCeE-------EE----EcCCHHHHHHHHHHHHcCCcEEEEECCCccchhHHHHHhCCeEEEeCCEeEEEecc
Confidence 000112334 34 899999999999999999999999998876431 12226677778888865
Q ss_pred -C----ceEEcC-------C--CEeecCEEEEcccccccCCCCCC-CCCeEeecCcccccccccc--cCCCCCeEEeccc
Q psy12350 315 -T----GVRFQD-------G--SYEQVDIILYCTGYTYRYPFLHE-SCGIKVVNKNVQPLYKHLI--NIEHPSMCIIGYT 377 (1129)
Q Consensus 315 -~----~v~~~d-------g--~~~~~D~VI~atG~~~~~~~l~~-~~~~~~~~~~~~~l~~~~~--~~~~p~l~~~G~~ 377 (1129)
+ +|.+++ | +++++|.||+|+|++++..++.. ..++.+++.. +.| ..++|++|.+|..
T Consensus 346 ~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~~g~i~vd~~~------~~~v~~ts~p~IyAaGD~ 419 (965)
T 2gag_A 346 ENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQRQGKLDWDTTI------HAFVPADAVANQHLAGAM 419 (965)
T ss_dssp TTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHTTCCEEEETTT------TEEEECSCCTTEEECGGG
T ss_pred CCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhCCCcEEEcCcc------cccccCCCCCCEEEEEec
Confidence 3 477765 5 56899999999999999887653 2446665532 111 2578999999987
Q ss_pred ccc-cccccccceeeehhhccccc
Q psy12350 378 YRY-PFLHESCGIKVVNKNVQPLY 400 (1129)
Q Consensus 378 ~~~-~~~~~~~~~~~~a~~~~~~~ 400 (1129)
... ++.....|++.+|.++.+.+
T Consensus 420 a~~~~l~~A~~~G~~aA~~i~~~l 443 (965)
T 2gag_A 420 TGRLDTASALSTGAATGAAAATAA 443 (965)
T ss_dssp GTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred CCchhHHHHHHHHHHHHHHHHHHc
Confidence 543 33344578888888877654
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.3e-19 Score=209.97 Aligned_cols=271 Identities=16% Similarity=0.193 Sum_probs=174.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCC-------------------CCCCCcccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCD-------------------QYGLPVHSS-- 798 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~-------------------~~g~p~~~~-- 798 (1129)
-+++|||+|++|+++|..|.+.| ++|+|+|+++.+||+|... +|- .+|++....
T Consensus 7 ~dVvIIGaG~aGl~aA~~l~~~G--~~V~liE~~~~~GG~~~~~---g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~ 81 (482)
T 1ojt_A 7 YDVVVLGGGPGGYSAAFAAADEG--LKVAIVERYKTLGGVCLNV---GCIPSKALLHNAAVIDEVRHLAANGIKYPEPEL 81 (482)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSCSSHHHHHH---SHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCC
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCCceeee---cccchHHHHHHHHHHHHHHHHHhCCcccCCCcc
Confidence 46899999999999999999999 9999999999999998632 210 011110000
Q ss_pred ccCcccccc----------ccccccccCCC--------CCCCCC-------------------CCCCChhhhhhccCCCC
Q psy12350 799 MYKSLKTNL----------PKDLMELCGYG--------HKGNAD-------------------KSYIGAKDVLENYNHPI 841 (1129)
Q Consensus 799 ~y~~~~~~~----------~~~~~~~~~~~--------~~~~~~-------------------~~~~~~~~v~~~~~~P~ 841 (1129)
.+..+.... ......-.+.. ...... ..+.....++.+|+.|.
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~ 161 (482)
T 1ojt_A 82 DIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVT 161 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCC
Confidence 000000000 00000000000 000000 01111222333899999
Q ss_pred CCC-CCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEE
Q psy12350 842 YPE-FKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVF 919 (1129)
Q Consensus 842 ~P~-i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~ 919 (1129)
.|+ ++ .+ ..++++.+..+... .+|+|+|||+|.+|+|+|..|++.|.+||++++.+..++. .+.+.....+.
T Consensus 162 ~~~~i~-~~---~~v~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~- 235 (482)
T 1ojt_A 162 KLPFIP-ED---PRIIDSSGALALKE-VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQ- 235 (482)
T ss_dssp CCSSCC-CC---TTEECHHHHTTCCC-CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHH-
T ss_pred CCCCCC-cc---CcEEcHHHHhcccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccccCHHHHHHHHHH-
Confidence 887 65 33 25777777655443 3899999999999999999999999999999998766542 22222211111
Q ss_pred EecCCccccccCCCCCeEEcCC--eeEEeCC----cEEecC----CcEeeccEEEEccCccCcCCCCC-CCCCeeecCCc
Q psy12350 920 LSHHSERVTSLCLPNNVVLKPD--VAELTPT----GVRFQD----GSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKN 988 (1129)
Q Consensus 920 ~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~----~V~~~d----G~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~ 988 (1129)
+. ..+|+++.+ |.+++.+ .|++.| |+++++|.||+|+|++|+.++|. +..|+++++++
T Consensus 236 --------l~---~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G 304 (482)
T 1ojt_A 236 --------NE---YRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRG 304 (482)
T ss_dssp --------HG---GGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTS
T ss_pred --------HH---hcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCC
Confidence 11 125666654 7777543 267777 77899999999999999988762 44788887655
Q ss_pred ccccccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 989 VQPLYKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 989 ~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
...+..+ +.++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 305 ~i~vd~~-~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 349 (482)
T 1ojt_A 305 FIEVDKQ-MRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGH 349 (482)
T ss_dssp CCCCCTT-SBCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred CEeeCCC-cccCCCCEEEEEcccCCCccHHHHHHHHHHHHHHHcCC
Confidence 3334333 34689999999999764 45689999999999999875
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.1e-19 Score=208.54 Aligned_cols=276 Identities=16% Similarity=0.168 Sum_probs=168.3
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC-CCCCCCCCCCccccccCcccc-----cc----ccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE-HIGCDQYGLPVHSSMYKSLKT-----NL----PKD 810 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~-~~g~~~~g~p~~~~~y~~~~~-----~~----~~~ 810 (1129)
+++|||+|++|+++|..|.+.++..+|+|+|+++.++.....-. +.+.....++ ...+...+.. +. ...
T Consensus 2 dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~gv~~~~~~~ 80 (452)
T 2cdu_A 2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNND-PRGLFYSSPEELSNLGANVQMRHQ 80 (452)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGC-GGGGBSCCHHHHHHTTCEEEESEE
T ss_pred eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCC-HHHhhhcCHHHHHHcCCEEEeCCE
Confidence 47899999999999999999833399999999886553211000 0000000000 0000000000 00 000
Q ss_pred ccccc--C--CCCCC--CC-CCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCC-----CCCeEEEEcCC
Q psy12350 811 LMELC--G--YGHKG--NA-DKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPF-----AGKQAVVVGSG 878 (1129)
Q Consensus 811 ~~~~~--~--~~~~~--~~-~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~-----~gk~VvVVG~G 878 (1129)
..... . +.... +. ...+.....++.+|+.|+.|++||.+. ..++++..+.+..++ .+|+|+|||+|
T Consensus 81 v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG 158 (452)
T 2cdu_A 81 VTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDS--SRVYLCKNYNDAKKLFEEAPKAKTITIIGSG 158 (452)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTS--TTEEECSSHHHHHHHHHHGGGCSEEEEECCS
T ss_pred EEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCCCCCCC--CCEEEeCcHHHHHHHHHHhccCCeEEEECcC
Confidence 00000 0 00000 00 001122233444999999999999863 247776555433222 58999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEeC-Cc-E--
Q psy12350 879 QSGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELTP-TG-V-- 950 (1129)
Q Consensus 879 ~Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~~-~~-V-- 950 (1129)
.+|+|+|..|++.|.+|+++++.+..++ +.+.+.....+.+. ..+|+++. .|++++. ++ +
T Consensus 159 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~------------~~Gv~i~~~~~v~~i~~~~~~v~~ 226 (452)
T 2cdu_A 159 YIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYE------------AHGVNLVLGSKVAAFEEVDDEIIT 226 (452)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHH------------HTTCEEEESSCEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHH------------HCCCEEEcCCeeEEEEcCCCeEEE
Confidence 9999999999999999999998776554 22222222211111 12556554 4788764 32 3
Q ss_pred EecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----------chhHHH
Q psy12350 951 RFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----------LLFNLF 1019 (1129)
Q Consensus 951 ~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----------~~~~~~ 1019 (1129)
...||+++++|.||+|||++|+.++++. . +++++++...+..+ +.++.||||++|++... ..++.+
T Consensus 227 v~~~g~~i~~D~vv~a~G~~p~~~ll~~-~-l~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A 303 (452)
T 2cdu_A 227 KTLDGKEIKSDIAILCIGFRPNTELLKG-K-VAMLDNGAIITDEY-MHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNA 303 (452)
T ss_dssp EETTSCEEEESEEEECCCEEECCGGGTT-T-SCBCTTSCBCCCTT-SBCSSTTEEECSTTBCEEETTTTEEECCCCHHHH
T ss_pred EEeCCCEEECCEEEECcCCCCCHHHHHH-h-hhcCCCCCEEECCC-cCcCCCCEEEcceEEEeccccCCCeeecchHHHH
Confidence 2348889999999999999999887765 4 66655543333333 34589999999998753 356899
Q ss_pred HHHHHHHHHHHcCCC
Q psy12350 1020 DLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 1020 e~qa~~~a~~l~g~~ 1034 (1129)
..||+.+|+.+.|..
T Consensus 304 ~~~g~~aa~~i~g~~ 318 (452)
T 2cdu_A 304 VRQGRLVGLNLTEDK 318 (452)
T ss_dssp HHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999998753
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-18 Score=199.67 Aligned_cols=260 Identities=19% Similarity=0.168 Sum_probs=157.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
.+++|||+|++|+++|..|.+.| ++|+|||+++.+||+|.+. +|... .-..+.......+..+ +..+
T Consensus 123 ~~V~IIGgGpAGl~aA~~L~~~G--~~V~v~e~~~~~GG~l~~g---------ip~~~-~~~~~~~~~~~~l~~~-gv~~ 189 (456)
T 2vdc_G 123 LSVGVIGAGPAGLAAAEELRAKG--YEVHVYDRYDRMGGLLVYG---------IPGFK-LEKSVVERRVKLLADA-GVIY 189 (456)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSCSTHHHHT---------SCTTT-SCHHHHHHHHHHHHHT-TCEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCCeeeec---------CCCcc-CCHHHHHHHHHHHHHC-CcEE
Confidence 46899999999999999999999 9999999999999999853 22110 0000000000000000 1111
Q ss_pred CCCC-C-CC-------CCChhhhhhccCC-CCCCCCCCCCCCCCcEEeeccC---------CC--------CCCCCCCeE
Q psy12350 820 KGNA-D-KS-------YIGAKDVLENYNH-PIYPEFKGKDMCQIPILHSRDY---------RT--------PEPFAGKQA 872 (1129)
Q Consensus 820 ~~~~-~-~~-------~~~~~~v~~~~~~-P~~P~i~G~~~f~g~~~hs~~~---------~~--------~~~~~gk~V 872 (1129)
..+. . .. ......++.+|+. |+.|++||.+ .. .++++.+| .+ .....||+|
T Consensus 190 ~~~~~v~~~v~~~~~~~~~d~vvlAtG~~~~~~~~ipG~~-~~-gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~V 267 (456)
T 2vdc_G 190 HPNFEVGRDASLPELRRKHVAVLVATGVYKARDIKAPGSG-LG-NIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHV 267 (456)
T ss_dssp ETTCCBTTTBCHHHHHSSCSEEEECCCCCEECCTTCSCCT-TT-TEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEE
T ss_pred EeCCEeccEEEhhHhHhhCCEEEEecCCCCCCCCCCCCCc-CC-CcEEHHHHHHHhhhhhcccccccccccccccCCCEE
Confidence 1000 0 00 0111223348875 7888999975 33 35543222 11 123579999
Q ss_pred EEEcCCccHHHHHHHHHhcCC-EEEEEecCCCC-ccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC
Q psy12350 873 VVVGSGQSGLDITLDIATTGK-QAVVVGSGQSG-LDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT 948 (1129)
Q Consensus 873 vVVG~G~Sg~eiA~~la~~~~-~V~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~ 948 (1129)
+|||+|++|+|+|..+.+.|. +|+++.+.... ++........++ ..+|++... +.++.++
T Consensus 268 vVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e~~~~~----------------~~Gv~~~~~~~~~~i~~~ 331 (456)
T 2vdc_G 268 VVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAE----------------EEGVEFIWQAAPEGFTGD 331 (456)
T ss_dssp EEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHHHHHHH----------------HTTCEEECCSSSCCEEEE
T ss_pred EEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHHHHHHH----------------HCCCEEEeCCCceEEeCC
Confidence 999999999999999999986 69999886543 222111000000 012222211 2222111
Q ss_pred c----EE------------------ecCC--cEeeccEEEEccCccCcCC--CCCCCCCeeecCCcccccccceeecCCC
Q psy12350 949 G----VR------------------FQDG--SYEQVDIILCCTGYSNHYP--FLHESCGIKVVNKNVQPLYKHTINIEHP 1002 (1129)
Q Consensus 949 ~----V~------------------~~dG--~~~~~D~VI~aTG~~~~~~--fl~~~~g~~~~~~~~~~ly~~~~~~~~p 1002 (1129)
+ |+ ..+| .++++|.||+|+|+.++.. ++.. +++++++++...+...++.++.|
T Consensus 332 g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~-~gl~~~~~G~i~vd~~~~~Ts~~ 410 (456)
T 2vdc_G 332 TVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDE-PELKVTRWGTLLVDHRTKMTNMD 410 (456)
T ss_dssp EEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHS-TTSCBCTTSSBCCCTTTCBCSST
T ss_pred CcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhccc-CCeeECCCCCEEECCCCCcCCCC
Confidence 1 11 1134 3579999999999999854 5554 67777766554555544567899
Q ss_pred CcEEEcccccc-chhHHHHHHHHHHHHHHc
Q psy12350 1003 TMFILGVPRHT-LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1003 ~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~ 1031 (1129)
+||++|++... .....+..|++.+|+.+.
T Consensus 411 ~VfA~GD~~~g~~~v~~A~~~G~~aA~~i~ 440 (456)
T 2vdc_G 411 GVFAAGDIVRGASLVVWAIRDGRDAAEGIH 440 (456)
T ss_dssp TEEECGGGGSSCCSHHHHHHHHHHHHHHHH
T ss_pred CEEEeccccCCchHHHHHHHHHHHHHHHHH
Confidence 99999998754 456788889998887764
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-18 Score=201.72 Aligned_cols=269 Identities=14% Similarity=0.147 Sum_probs=167.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
.+++|||+|++|+++|..|++.|...+|+++|+++ |..|........-..+.. ...+..........-.+..+
T Consensus 5 ~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~--g~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~ 77 (384)
T 2v3a_A 5 APLVIIGTGLAGYNLAREWRKLDGETPLLMITADD--GRSYSKPMLSTGFSKNKD-----ADGLAMAEPGAMAEQLNARI 77 (384)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC--CCEECGGGGGGTTTTTCC-----HHHHEEECHHHHHHHTTCEE
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC--CCccCcccccHHHhCCCC-----HHHhhccCHHHHHHhCCcEE
Confidence 47899999999999999999999667799999875 544431100000000000 00000000000000000000
Q ss_pred C--CC--------C-----CCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCC-----CCCCCeEEEEcCCc
Q psy12350 820 K--GN--------A-----DKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPE-----PFAGKQAVVVGSGQ 879 (1129)
Q Consensus 820 ~--~~--------~-----~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~-----~~~gk~VvVVG~G~ 879 (1129)
- .. + ...+....-++.+|+.|+.|++||.+. ..++++.++.+.. -..+|+|+|||+|.
T Consensus 78 ~~~~~v~~i~~~~~~v~~~~~~~~~d~lviAtG~~p~~p~i~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~ 155 (384)
T 2v3a_A 78 LTHTRVTGIDPGHQRIWIGEEEVRYRDLVLAWGAEPIRVPVEGDAQ--DALYPINDLEDYARFRQAAAGKRRVLLLGAGL 155 (384)
T ss_dssp ECSCCCCEEEGGGTEEEETTEEEECSEEEECCCEEECCCCCBSTTT--TCEEECSSHHHHHHHHHHHTTCCEEEEECCSH
T ss_pred EeCCEEEEEECCCCEEEECCcEEECCEEEEeCCCCcCCCCCCCcCc--CCEEEECCHHHHHHHHHhhccCCeEEEECCCH
Confidence 0 00 0 001112223334999999999999753 3567766553321 12389999999999
Q ss_pred cHHHHHHHHHhcCCEEEEEecCCCCccc--hhhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEeC--C--cEE
Q psy12350 880 SGLDITLDIATTGKQAVVVGSGQSGLDI--TLDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELTP--T--GVR 951 (1129)
Q Consensus 880 Sg~eiA~~la~~~~~V~vv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~~--~--~V~ 951 (1129)
+|+|+|..|++.|.+|+++++.+..++. .+.+.....+. +. ..+|+++. .|.+++. + .|+
T Consensus 156 ~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~---------l~---~~gv~i~~~~~v~~i~~~~~~~~v~ 223 (384)
T 2v3a_A 156 IGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAG---------LE---GLGVRFHLGPVLASLKKAGEGLEAH 223 (384)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHH---------HH---TTTCEEEESCCEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHH---------HH---HcCCEEEeCCEEEEEEecCCEEEEE
Confidence 9999999999999999999987655432 11111111111 10 12555554 3777754 2 377
Q ss_pred ecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccc--c---chhHHHHHHHHHH
Q psy12350 952 FQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH--T---LLFNLFDLQVRLF 1026 (1129)
Q Consensus 952 ~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~--~---~~~~~~e~qa~~~ 1026 (1129)
+.||+++++|.||+|+|++++.+++.. +|+++++ + ..+..+ +.++.||||++|++.. . ..+..+..||+.+
T Consensus 224 ~~~g~~i~~d~vv~a~G~~p~~~l~~~-~g~~~~~-g-i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~ 299 (384)
T 2v3a_A 224 LSDGEVIPCDLVVSAVGLRPRTELAFA-AGLAVNR-G-IVVDRS-LRTSHANIYALGDCAEVDGLNLLYVMPLMACARAL 299 (384)
T ss_dssp ETTSCEEEESEEEECSCEEECCHHHHH-TTCCBSS-S-EEECTT-CBCSSTTEEECGGGEEETTBCCCSHHHHHHHHHHH
T ss_pred ECCCCEEECCEEEECcCCCcCHHHHHH-CCCCCCC-C-EEECCC-CCCCCCCEEEeeeeeeECCCCcchHHHHHHHHHHH
Confidence 889999999999999999999776543 6777764 3 334333 4478999999999864 2 2356789999999
Q ss_pred HHHHcCC
Q psy12350 1027 QQLMQGH 1033 (1129)
Q Consensus 1027 a~~l~g~ 1033 (1129)
|+.+.|.
T Consensus 300 a~~i~g~ 306 (384)
T 2v3a_A 300 AQTLAGN 306 (384)
T ss_dssp HHHHTTC
T ss_pred HHHhcCC
Confidence 9999885
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.8e-19 Score=215.35 Aligned_cols=275 Identities=15% Similarity=0.163 Sum_probs=168.0
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc-CCC-CCCCCCCCCccccccCccc-----ccc----cc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY-TEH-IGCDQYGLPVHSSMYKSLK-----TNL----PK 809 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~-~~~-~g~~~~g~p~~~~~y~~~~-----~~~----~~ 809 (1129)
+++|||+|++|+++|..|++.++.++|+|||+++.++..... ..+ .+.. .+.......... .+. ..
T Consensus 3 ~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (565)
T 3ntd_A 3 KILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEI---AQRSALVLQTPESFKARFNVEVRVKH 79 (565)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSS---CCGGGGBCCCHHHHHHHHCCEEETTE
T ss_pred cEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCc---CChHHhhccCHHHHHHhcCcEEEECC
Confidence 578999999999999999999555999999999877621100 000 0000 000000000000 000 00
Q ss_pred cccccc--C--CCCC---CCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCC-------CCCCCeEEEE
Q psy12350 810 DLMELC--G--YGHK---GNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPE-------PFAGKQAVVV 875 (1129)
Q Consensus 810 ~~~~~~--~--~~~~---~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~-------~~~gk~VvVV 875 (1129)
...... . +... ......+.....++.+|+.|+.|++||.+.. .++++..+.+.. ...+|+|+||
T Consensus 80 ~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ipG~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~vvVi 157 (565)
T 3ntd_A 80 EVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNP--LTHSLRNIPDMDRILQTIQMNNVEHATVV 157 (565)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTCCST--TEECCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCCCCCCCC--CEEEeCCHHHHHHHHHHHhhCCCCEEEEE
Confidence 000000 0 0000 0000012223344559999999999998642 344444332211 1357899999
Q ss_pred cCCccHHHHHHHHHhcCCEEEEEecCCCCccch-hhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEeC-----
Q psy12350 876 GSGQSGLDITLDIATTGKQAVVVGSGQSGLDIT-LDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELTP----- 947 (1129)
Q Consensus 876 G~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~~----- 947 (1129)
|+|.+|+|+|..|++.|.+|+++++.+..++.. +.+.....+.+. ..+|+++. .+.+++.
T Consensus 158 GgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~------------~~GV~i~~~~~v~~i~~~~~~~ 225 (565)
T 3ntd_A 158 GGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIR------------DQGVDLRLGTALSEVSYQVQTH 225 (565)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESSSSSCTTSCHHHHHHHHHHHH------------HTTCEEEETCCEEEEEEECCCC
T ss_pred CCCHHHHHHHHHHHhcCCcEEEEEcCCccchhcCHHHHHHHHHHHH------------HCCCEEEeCCeEEEEecccccc
Confidence 999999999999999999999999877655421 222111111100 11455543 3666643
Q ss_pred ---------------C---cEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcc
Q psy12350 948 ---------------T---GVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGV 1009 (1129)
Q Consensus 948 ---------------~---~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~ 1009 (1129)
+ .+++.||+++++|.||+|||++|+.+++.. .|+.+++++...+.. .+.++.||||++|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~-~g~~~~~~g~i~vd~-~~~t~~~~IyA~GD 303 (565)
T 3ntd_A 226 VASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARD-AGLAIGELGGIKVNA-MMQTSDPAIYAVGD 303 (565)
T ss_dssp CCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECCHHHHH-HTCCBCTTSSBCCCT-TCBCSSTTEEECGG
T ss_pred ccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccchHHHHh-CCcccCCCCCEEECC-CcccCCCCEEEeee
Confidence 2 267789999999999999999999876643 677776655443433 34568999999999
Q ss_pred ccc------c-----chhHHHHHHHHHHHHHHcCCC
Q psy12350 1010 PRH------T-----LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 1010 ~~~------~-----~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
+.. + ...+.+..||+.+|+.+.|..
T Consensus 304 ~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 339 (565)
T 3ntd_A 304 AVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGRE 339 (565)
T ss_dssp GBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred eEeeccccCCceeecccHHHHHHHHHHHHHHhcCCC
Confidence 862 1 246889999999999999864
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-18 Score=202.10 Aligned_cols=285 Identities=10% Similarity=0.156 Sum_probs=171.6
Q ss_pred ceEEEEcCChHHHHHHHHhhc-CCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTE-PGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~-~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
++|+|||||+||++||..|++ .+.+++|+|+|+++.. .| .+.+.. +
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~----~~--------------~~~~~~-----------~---- 51 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF----QF--------------VPSNPW-----------V---- 51 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE----EC--------------GGGHHH-----------H----
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC----cc--------------cCCccc-----------c----
Confidence 699999999999999999988 2346899999997631 11 000000 0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
.......+++...+.+++++.++ .+. ..+|+.++.. ...+.+. + .....|| +||+||
T Consensus 52 -----~~g~~~~~~~~~~l~~~~~~~gv--~~~-~~~v~~id~~-----~~~V~~~---~--g~~i~~d-----~lviAt 108 (437)
T 3sx6_A 52 -----GVGWKERDDIAFPIRHYVERKGI--HFI-AQSAEQIDAE-----AQNITLA---D--GNTVHYD-----YLMIAT 108 (437)
T ss_dssp -----HHTSSCHHHHEEECHHHHHTTTC--EEE-CSCEEEEETT-----TTEEEET---T--SCEEECS-----EEEECC
T ss_pred -----ccCccCHHHHHHHHHHHHHHCCC--EEE-EeEEEEEEcC-----CCEEEEC---C--CCEEECC-----EEEECC
Confidence 00112344555556677777766 454 4688888752 2333321 1 2357799 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccc-cc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE-FR 247 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~ 247 (1129)
| +.|+.|++||..... +. ...+. + .+.+....+.+.. ..
T Consensus 109 G--~~~~~~~ipG~~~~~--~~--------~~~~~---~-------------------------~~~a~~~~~~~~~~~~ 148 (437)
T 3sx6_A 109 G--PKLAFENVPGSDPHE--GP--------VQSIC---T-------------------------VDHAERAFAEYQALLR 148 (437)
T ss_dssp C--CEECGGGSTTCSTTT--SS--------EECCS---S-------------------------HHHHHHHHHHHHHHHH
T ss_pred C--CCcCcccCCCCCccc--Cc--------ceecc---c-------------------------ccHHHHHHHHHHHHHh
Confidence 9 788888888742110 00 00000 0 0000000000100 01
Q ss_pred ccceeEeeceeeeecCCCCCCCCc------ccchh----hhcccccE-----EEEccccCCcccccC---CC--------
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSG------LDITH----DISTEATT-----VFLSHHSEHVKKLRF---PN-------- 301 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg------~e~A~----~l~~~~~~-----V~lv~r~~~~~~~~~---~~-------- 301 (1129)
.++++| ||+|++| +|+|. .+.+.+.+ |+++++.+.+..... +.
T Consensus 149 ~~~~vV-----------VGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~ 217 (437)
T 3sx6_A 149 EPGPIV-----------IGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKG 217 (437)
T ss_dssp SCCCEE-----------EEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHH
T ss_pred CCCEEE-----------EEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHH
Confidence 234444 6886665 88884 44555543 999999886532211 11
Q ss_pred ------CeEEcCCceEEcCCceEEcC---------CCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccC
Q psy12350 302 ------NVVKKPDIAELTPTGVRFQD---------GSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINI 366 (1129)
Q Consensus 302 ------~i~~~~~v~~~~~~~v~~~d---------g~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 366 (1129)
++..+..|++++++++++++ ++++++|.|++|+|+++..++.. ..++ .+++..+....++..+
T Consensus 218 l~~~gI~~~~~~~v~~v~~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~-~~gl-~~~~G~i~Vd~~l~t~ 295 (437)
T 3sx6_A 218 LKEEGIEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAG-VEGL-CNPGGFVLVDEHQRSK 295 (437)
T ss_dssp HHHTTCEEECSEEEEEEETTEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHT-STTT-BCTTSCBCBCTTSBBS
T ss_pred HHHCCCEEEcCCEEEEEECCeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhc-cccc-cCCCCcEEeChhccCC
Confidence 34556779999988887765 56789999999999987644332 2233 3444444444444446
Q ss_pred CCCCeEEeccccccc--------------ccccccceeeehhhcccccccc
Q psy12350 367 EHPSMCIIGYTYRYP--------------FLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 367 ~~p~l~~~G~~~~~~--------------~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
++|++|++|.....| ......|++.+|.++.+.+.|+
T Consensus 296 ~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~g~ 346 (437)
T 3sx6_A 296 KYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADLEGR 346 (437)
T ss_dssp SCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 889999999875422 1223488999999999888776
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.2e-18 Score=188.37 Aligned_cols=265 Identities=13% Similarity=0.108 Sum_probs=164.1
Q ss_pred eeeccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-CCCCccccccCccccccccccccc
Q psy12350 736 FIKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-YGLPVHSSMYKSLKTNLPKDLMEL 814 (1129)
Q Consensus 736 ~~~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-~g~p~~~~~y~~~~~~~~~~~~~~ 814 (1129)
.|...+++|||+||+|++||.+|.+.| ++|+|||++ ..||.+..+ +++-.. .+++.. .+......+...+
T Consensus 3 ~M~~yDVvIIGaGpAGlsAA~~lar~g--~~v~lie~~-~~gg~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 73 (304)
T 4fk1_A 3 AMKYIDCAVIGAGPAGLNASLVLGRAR--KQIALFDNN-TNRNRVTQN-SHGFITRDGIKPE-----EFKEIGLNEVMKY 73 (304)
T ss_dssp ---CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEECS-CCGGGGSSC-BCCSTTCTTBCHH-----HHHHHHHHHHTTS
T ss_pred CCCCcCEEEECCCHHHHHHHHHHHHCC--CCEEEEeCC-CCCCeeeee-cCCccCCCCCCHH-----HHHHHHHHHHHhc
Confidence 456678999999999999999999999 999999986 467766432 222100 011100 0000000001111
Q ss_pred cCC------------------CCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEc
Q psy12350 815 CGY------------------GHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVG 876 (1129)
Q Consensus 815 ~~~------------------~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG 876 (1129)
... .........+....-++.+|+.|+.|++||.+.+.++.++.....+...+++|+++|||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~G~~~~~~~~v~~~~~~~~~~~~~~~~~VIg 153 (304)
T 4fk1_A 74 PSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPYCDGWELKDQPLIIIS 153 (304)
T ss_dssp TTEEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCTTHHHHBTTTEESCHHHHSGGGTTSCEEEEC
T ss_pred CCEEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccccccccCccccccceeeeccccchhHhcCCceeeec
Confidence 000 00000011222233455599999999999988777766665555555567789999999
Q ss_pred CCcc-HHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC-eeEEeCC-----c
Q psy12350 877 SGQS-GLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD-VAELTPT-----G 949 (1129)
Q Consensus 877 ~G~S-g~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-i~~v~~~-----~ 949 (1129)
||.. ++|+|..+.+.+++|+++.+......... + .+. ..++.+... ++.+..+ .
T Consensus 154 gG~~~~~e~a~~~~~~~~~v~i~~~~~~~~~~~~---~-------------~l~---~~g~~~~~~~v~~~~~~~~~~~~ 214 (304)
T 4fk1_A 154 ENEDHTLHMTKLVYNWSTDLVIATNGNELSQTIM---D-------------ELS---NKNIPVITESIRTLQGEGGYLKK 214 (304)
T ss_dssp CSHHHHHHHHHHHTTTCSCEEEECSSCCCCHHHH---H-------------HHH---TTTCCEECSCEEEEESGGGCCCE
T ss_pred CCCchhhhHHHHHHhCCceEEEEeccccchhhhh---h-------------hhh---ccceeEeeeeEEEeecCCCeeee
Confidence 9875 57888888888999999987543321110 0 000 113333333 5555432 3
Q ss_pred EEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc--hhHHHHHHHHHHH
Q psy12350 950 VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL--LFNLFDLQVRLFQ 1027 (1129)
Q Consensus 950 V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~--~~~~~e~qa~~~a 1027 (1129)
|++.||+++++|.+|+++|..++.+++.+ +|+++++++...+..+ +.++.||||++|++.... ....+-.|++.+|
T Consensus 215 v~~~~g~~i~~~~~vi~~g~~~~~~~~~~-~g~~~~~~G~I~vd~~-~~Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA 292 (304)
T 4fk1_A 215 VEFHSGLRIERAGGFIVPTFFRPNQFIEQ-LGCELQSNGTFVIDDF-GRTSEKNIYLAGETTTQGPSSLIIAASQGNKAA 292 (304)
T ss_dssp EEETTSCEECCCEEEECCEEECSSCHHHH-TTCCCCTTSSSCSSTT-CBCSSTTEEECSHHHHTSCCCHHHHHHHHHHHH
T ss_pred eeccccceeeecceeeeeccccCChhhhh-cCeEECCCCCEEECcC-CccCCCCEEEEeccCCCcchHHHHHHHHHHHHH
Confidence 88999999999999998888877676654 7888877654444333 356899999999986432 3456666777776
Q ss_pred HHH
Q psy12350 1028 QLM 1030 (1129)
Q Consensus 1028 ~~l 1030 (1129)
..+
T Consensus 293 ~~i 295 (304)
T 4fk1_A 293 IAI 295 (304)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-18 Score=202.22 Aligned_cols=272 Identities=14% Similarity=0.143 Sum_probs=165.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccc----cc-
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLM----EL- 814 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~----~~- 814 (1129)
.+++|||+|++|+.+|..|++.|.+.+|+|+|+++.++.. +.+-... .-......+.+......... .+
T Consensus 5 ~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~----~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~gv~~~ 78 (431)
T 1q1r_A 5 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHH----LPPLSKA--YLAGKATAESLYLRTPDAYAAQNIQLL 78 (431)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBC----SGGGGTT--TTTTCSCSGGGBSSCHHHHHHTTEEEE
T ss_pred CcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCc----CCCCcHH--HhCCCCChHHhcccCHHHHHhCCCEEE
Confidence 4689999999999999999999943489999998764321 0000000 00000000000000000000 00
Q ss_pred cCCC---CCC-------CCCCCCCChhhhhhccCCCCCCCCCCCCCCCC-c-EEeeccCCCC-----CCCCCCeEEEEcC
Q psy12350 815 CGYG---HKG-------NADKSYIGAKDVLENYNHPIYPEFKGKDMCQI-P-ILHSRDYRTP-----EPFAGKQAVVVGS 877 (1129)
Q Consensus 815 ~~~~---~~~-------~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g-~-~~hs~~~~~~-----~~~~gk~VvVVG~ 877 (1129)
.+.. +.. .....+....-++.+|+.|+.|++||.+ +.+ . +++.....+. .-..+|+|+|||+
T Consensus 79 ~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~i~G~~-~~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGg 157 (431)
T 1q1r_A 79 GGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGA-VGKANNFRYLRTLEDAECIRRQLIADNRLVVIGG 157 (431)
T ss_dssp CSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTH-HHHSTTEEESSSHHHHHHHHHTCCTTCEEEEECC
T ss_pred eCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCccCCCCCCcc-cCCCceEEEECCHHHHHHHHHHhhcCCeEEEECC
Confidence 0000 000 0011122223344499999999999975 222 1 4432222211 1125899999999
Q ss_pred CccHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC---C--
Q psy12350 878 GQSGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP---T-- 948 (1129)
Q Consensus 878 G~Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~---~-- 948 (1129)
|.+|+|+|..|++.|.+|+++++.+..++ +.+.+.....+.+. ..+|++..+ |.+++. +
T Consensus 158 G~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~------------~~GV~i~~~~~v~~i~~~~~~~~ 225 (431)
T 1q1r_A 158 GYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHR------------EAGVDIRTGTQVCGFEMSTDQQK 225 (431)
T ss_dssp SHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHH------------HHTCEEECSCCEEEEEECTTTCC
T ss_pred CHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHH------------hCCeEEEeCCEEEEEEeccCCCc
Confidence 99999999999999999999998766543 22222221111110 115666544 777764 2
Q ss_pred --cEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc-----------h
Q psy12350 949 --GVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL-----------L 1015 (1129)
Q Consensus 949 --~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-----------~ 1015 (1129)
.|++.||+++++|.||+|+|++|+.+++.. .|+++++ + ..+..+ +.++.||||++|++.... .
T Consensus 226 v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~-~gl~~~~-g-i~Vd~~-~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~ 301 (431)
T 1q1r_A 226 VTAVLCEDGTRLPADLVIAGIGLIPNCELASA-AGLQVDN-G-IVINEH-MQTSDPLIMAVGDCARFHSQLYDRWVRIES 301 (431)
T ss_dssp EEEEEETTSCEEECSEEEECCCEEECCHHHHH-TTCCBSS-S-EECCTT-SBCSSTTEEECGGGEEEEETTTTEEEECCS
T ss_pred EEEEEeCCCCEEEcCEEEECCCCCcCcchhhc-cCCCCCC-C-EEECCC-cccCCCCEEEEEeEEEEccccCCceEeeCH
Confidence 378889999999999999999999877654 6677654 3 233332 345899999999987532 3
Q ss_pred hHHHHHHHHHHHHHHcCCC
Q psy12350 1016 FNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 1016 ~~~~e~qa~~~a~~l~g~~ 1034 (1129)
++.+..||+.+|+.+.|..
T Consensus 302 ~~~A~~qg~~aa~~i~g~~ 320 (431)
T 1q1r_A 302 VPNALEQARKIAAILCGKV 320 (431)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 5789999999999998863
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-17 Score=196.18 Aligned_cols=266 Identities=14% Similarity=0.134 Sum_probs=167.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCC-CCCcc--ccccCcccccc---------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQY-GLPVH--SSMYKSLKTNL--------- 807 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~-g~p~~--~~~y~~~~~~~--------- 807 (1129)
.+++|||+|++|+++|..|.+.| ++++++|+ .+||.|.... +...+ +.+.. ..+...+....
T Consensus 213 ~dVvIIGgG~AGl~aA~~la~~G--~~v~lie~--~~GG~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~ 286 (521)
T 1hyu_A 213 YDVLIVGSGPAGAAAAVYSARKG--IRTGLMGE--RFGGQVLDTV--DIENYISVPKTEGQKLAGALKAHVSDYDVDVID 286 (521)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECS--STTGGGTTCS--CBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEEC
T ss_pred ccEEEECCcHHHHHHHHHHHhCC--CeEEEEEC--CCCCcccccc--cccccCCCCCCCHHHHHHHHHHHHHHcCCEEEc
Confidence 36789999999999999999999 99999986 5899997431 10000 00000 00000000000
Q ss_pred cccccccc-------CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCcc
Q psy12350 808 PKDLMELC-------GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQS 880 (1129)
Q Consensus 808 ~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~S 880 (1129)
........ .+.........+.....++.+|+.|+.|++||.+.|.+..+|...+.+...+.+|+|+|||+|.+
T Consensus 287 ~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~V~ViGgG~~ 366 (521)
T 1hyu_A 287 SQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNS 366 (521)
T ss_dssp SCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCCGGGGBTSEEEEECCSHH
T ss_pred CCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCchhhcCCCeEEEECCCHH
Confidence 00000000 00000000011111223334999999999999988887767766655555567999999999999
Q ss_pred HHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----cEEec
Q psy12350 881 GLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----GVRFQ 953 (1129)
Q Consensus 881 g~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~~~ 953 (1129)
|+|+|..|++.+.+|+++.+.+....- ..+. ..+.. ..+|++..+ +.++.++ +|.+.
T Consensus 367 g~E~A~~L~~~g~~Vtlv~~~~~l~~~-~~l~-------------~~l~~--~~gV~v~~~~~v~~i~~~~~~v~~v~~~ 430 (521)
T 1hyu_A 367 GVEAAIDLAGIVEHVTLLEFAPEMKAD-QVLQ-------------DKVRS--LKNVDIILNAQTTEVKGDGSKVVGLEYR 430 (521)
T ss_dssp HHHHHHHHHHHBSEEEEECSSSSCCSC-HHHH-------------HHHTT--CTTEEEECSEEEEEEEECSSSEEEEEEE
T ss_pred HHHHHHHHHhhCCEEEEEEeCcccCcC-HHHH-------------HHHhc--CCCcEEEeCCEEEEEEcCCCcEEEEEEE
Confidence 999999999999999999886543210 0000 01110 136777765 7778653 36665
Q ss_pred C---Cc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc--hhHHHHHHHHHH
Q psy12350 954 D---GS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL--LFNLFDLQVRLF 1026 (1129)
Q Consensus 954 d---G~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~--~~~~~e~qa~~~ 1026 (1129)
| |+ ++++|.||+|+|++|+.+++.. .+.+++++...+..+ ..++.||||++|++.... ....+..||+.+
T Consensus 431 ~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~--~l~~~~~G~I~Vd~~-~~ts~p~VfA~GD~~~~~~~~~~~A~~~g~~a 507 (521)
T 1hyu_A 431 DRVSGDIHSVALAGIFVQIGLLPNTHWLEG--ALERNRMGEIIIDAK-CETSVKGVFAAGDCTTVPYKQIIIATGEGAKA 507 (521)
T ss_dssp ETTTCCEEEEECSEEEECCCEEESCGGGTT--TSCBCTTSCBCCCTT-CBCSSTTEEECSTTBCCSSCCHHHHHHHHHHH
T ss_pred eCCCCceEEEEcCEEEECcCCCCCchHHhh--hhccCCCCcEEeCCC-CCCCCCCEEEeecccCCCcceeeehHHhHHHH
Confidence 4 64 5799999999999999888875 255555443333332 345899999999987643 456777788877
Q ss_pred HHHH
Q psy12350 1027 QQLM 1030 (1129)
Q Consensus 1027 a~~l 1030 (1129)
|..+
T Consensus 508 a~~i 511 (521)
T 1hyu_A 508 SLSA 511 (521)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-18 Score=203.48 Aligned_cols=99 Identities=8% Similarity=0.114 Sum_probs=65.1
Q ss_pred CeEEcCCceEEcCCceEEcC--C--CEeecCEEEEcccccccCCCCCCC-CCeEeecCcccccccccccCCCCCeEEecc
Q psy12350 302 NVVKKPDIAELTPTGVRFQD--G--SYEQVDIILYCTGYTYRYPFLHES-CGIKVVNKNVQPLYKHLINIEHPSMCIIGY 376 (1129)
Q Consensus 302 ~i~~~~~v~~~~~~~v~~~d--g--~~~~~D~VI~atG~~~~~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~ 376 (1129)
++..+..|++++++++++++ | +++++|.||+|+|.+++ +++... ..+..+....+.....+-.+++|++|.+|.
T Consensus 216 ~~~~~~~v~~v~~~~~~~~~~~g~~~~i~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD 294 (430)
T 3hyw_A 216 DWIANVAVKAIEPDKVIYEDLNGNTHEVPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGV 294 (430)
T ss_dssp EEECSCEEEEECSSEEEEECTTSCEEEEECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECST
T ss_pred EEEeCceEEEEeCCceEEEeeCCCceEeecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCCCCCEEEecc
Confidence 45667889999999888765 3 36899999999999986 333211 112222222222223333467788888886
Q ss_pred cccc----------------cccccccceeeehhhcccccccc
Q psy12350 377 TYRY----------------PFLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 377 ~~~~----------------~~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
.... +.+. +||+.+|+|+.+.+.|+
T Consensus 295 ~a~~p~~~~~~~~~~~pk~a~~A~--~qg~~~A~Ni~~~l~g~ 335 (430)
T 3hyw_A 295 VTAIPPIEKTPIPTGVPKTGMMIE--QMAMAVAHNIVNDIRNN 335 (430)
T ss_dssp TBCCCCSSCCSSCCCCCCCHHHHH--HHHHHHHHHHHHHHTTC
T ss_pred EEecCCcccCcCcCccchHHHHHH--HHHHHHHHHHHHHhcCC
Confidence 6432 2344 89999999999888776
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-18 Score=203.66 Aligned_cols=273 Identities=13% Similarity=0.168 Sum_probs=166.5
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc-cCCC-CCCCCCCCCccccccCccc----c--ccc----
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL-YTEH-IGCDQYGLPVHSSMYKSLK----T--NLP---- 808 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~-~~~~-~g~~~~g~p~~~~~y~~~~----~--~~~---- 808 (1129)
+++|||+|++|+++|..|++.++..+|+|+|+++..++... ...+ .+. .+....+..... . +..
T Consensus 38 dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~gv~~~~~ 113 (480)
T 3cgb_A 38 NYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGA----IASTEKLIARNVKTFRDKYGIDAKVR 113 (480)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTS----SSCGGGGBSSCHHHHHHTTCCEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCC----cCCHHHhhhcCHHHHHhhcCCEEEeC
Confidence 78999999999999999999733399999999887653211 0000 000 000000000000 0 000
Q ss_pred ccccccc--C--CCCCC-CCCC--CCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCC-------CCCCCeEEE
Q psy12350 809 KDLMELC--G--YGHKG-NADK--SYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPE-------PFAGKQAVV 874 (1129)
Q Consensus 809 ~~~~~~~--~--~~~~~-~~~~--~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~-------~~~gk~VvV 874 (1129)
....... . +.... .... .+.....++.+|+.|+.|++||.+. ..++|...+.+.. ...+|+|+|
T Consensus 114 ~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~--~~v~~~~~~~~~~~l~~~~~~~~~~~vvV 191 (480)
T 3cgb_A 114 HEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDL--QGVHLLKTIPDAERILKTLETNKVEDVTI 191 (480)
T ss_dssp EEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCBTTTS--BTEECCSSHHHHHHHHHHHHSSCCCEEEE
T ss_pred CEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCCCCccC--CCEEEeCCHHHHHHHHHHhhhcCCCeEEE
Confidence 0000000 0 00000 0000 1222334445999999999999863 2366654443321 126899999
Q ss_pred EcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc-E
Q psy12350 875 VGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG-V 950 (1129)
Q Consensus 875 VG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~-V 950 (1129)
||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+. +. ..+|++..+ |.+++.++ +
T Consensus 192 iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~---------l~---~~Gv~i~~~~~v~~i~~~~~v 259 (480)
T 3cgb_A 192 IGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKE---------AD---KHHIEILTNENVKAFKGNERV 259 (480)
T ss_dssp ECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSSSCHHHHHHHHHH---------HH---HTTCEEECSCCEEEEEESSBE
T ss_pred ECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhcCCHHHHHHHHHH---------HH---HcCcEEEcCCEEEEEEcCCcE
Confidence 999999999999999999999999987654431 11111111110 10 125666543 77776543 2
Q ss_pred --EecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----------chhH
Q psy12350 951 --RFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----------LLFN 1017 (1129)
Q Consensus 951 --~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----------~~~~ 1017 (1129)
...++.++++|.||+|||++|+.+++.. .|+++++++...+..+ +.++.||||++|++... ..++
T Consensus 260 ~~v~~~~~~i~~D~vi~a~G~~p~~~~l~~-~g~~~~~~G~I~Vd~~-~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~ 337 (480)
T 3cgb_A 260 EAVETDKGTYKADLVLVSVGVKPNTDFLEG-TNIRTNHKGAIEVNAY-MQTNVQDVYAAGDCATHYHVIKEIHDHIPIGT 337 (480)
T ss_dssp EEEEETTEEEECSEEEECSCEEESCGGGTT-SCCCBCTTSCBCCCTT-SBCSSTTEEECGGGBCEEBTTTCSEECCCCHH
T ss_pred EEEEECCCEEEcCEEEECcCCCcChHHHHh-CCcccCCCCCEEECCC-ccCCCCCEEEeeeEEEecCCCCCcceecchHH
Confidence 2234567899999999999999887764 6777765544334333 34579999999998732 2468
Q ss_pred HHHHHHHHHHHHHcCC
Q psy12350 1018 LFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1018 ~~e~qa~~~a~~l~g~ 1033 (1129)
.+..||+.+|+.+.|.
T Consensus 338 ~A~~qg~~aa~~i~g~ 353 (480)
T 3cgb_A 338 TANKQGRLAGLNMLDK 353 (480)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999999875
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.1e-18 Score=201.12 Aligned_cols=272 Identities=16% Similarity=0.148 Sum_probs=166.7
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc-CCC-CCCCCCCCCccccccCccccccccccccc-cCC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY-TEH-IGCDQYGLPVHSSMYKSLKTNLPKDLMEL-CGY 817 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~-~~~-~g~~~~g~p~~~~~y~~~~~~~~~~~~~~-~~~ 817 (1129)
+++|||+|++|+.+|..|++.++..+|+|+|+++.+|..... ..+ .+. .+....+.........+.-..+ ...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~gv~~~~~~ 77 (447)
T 1nhp_A 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGK----VKDVNSVRYMTGEKMESRGVNVFSNT 77 (447)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTS----SCCGGGSBSCCHHHHHHTTCEEEETE
T ss_pred eEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCc----cCCHHHhhcCCHHHHHHCCCEEEECC
Confidence 478999999999999999998333999999998876521100 000 000 0000000000000000000000 000
Q ss_pred C---C-CCCC---------CC--CCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCC-------CCCCCCeEEEE
Q psy12350 818 G---H-KGNA---------DK--SYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTP-------EPFAGKQAVVV 875 (1129)
Q Consensus 818 ~---~-~~~~---------~~--~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~-------~~~~gk~VvVV 875 (1129)
. + +... .. .+....-++.+|+.|+.|++||.+. . .++|+.++.+. ....+++|+||
T Consensus 78 ~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~-~-~v~~~~~~~~~~~l~~~~~~~~~~~vvIi 155 (447)
T 1nhp_A 78 EITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDL-D-NIYLMRGRQWAIKLKQKTVDPEVNNVVVI 155 (447)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCSTTTTS-B-SEECCCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred EEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCCCCCCC-C-CeEEECCHHHHHHHHHHhhhcCCCeEEEE
Confidence 0 0 0000 00 0122333445999999999999863 2 47776554332 11268999999
Q ss_pred cCCccHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc--
Q psy12350 876 GSGQSGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG-- 949 (1129)
Q Consensus 876 G~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~-- 949 (1129)
|+|.+|+|+|..|++.|.+|+++++.+..++ +.+.+.....+ .+. ..+|+++.+ |.+++.++
T Consensus 156 G~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~---------~l~---~~gv~i~~~~~v~~i~~~~~v 223 (447)
T 1nhp_A 156 GSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTE---------EME---ANNITIATGETVERYEGDGRV 223 (447)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHH---------HHH---TTTEEEEESCCEEEEECSSBC
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHH---------HHH---hCCCEEEcCCEEEEEEccCcE
Confidence 9999999999999999999999998765543 22222111111 011 125666643 88886543
Q ss_pred --EEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----------chh
Q psy12350 950 --VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----------LLF 1016 (1129)
Q Consensus 950 --V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----------~~~ 1016 (1129)
+.+ +|+++++|.||+|||++|+.++++. . +++++++...+..+ +.++.||||++|++... ...
T Consensus 224 ~~v~~-~~~~i~~d~vi~a~G~~p~~~~~~~-~-~~~~~~G~i~Vd~~-~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~ 299 (447)
T 1nhp_A 224 QKVVT-DKNAYDADLVVVAVGVRPNTAWLKG-T-LELHPNGLIKTDEY-MRTSEPDVFAVGDATLIKYNPADTEVNIALA 299 (447)
T ss_dssp CEEEE-SSCEEECSEEEECSCEEESCGGGTT-T-SCBCTTSCBCCCTT-CBCSSTTEEECGGGSCEEEGGGTEEECCCCH
T ss_pred EEEEE-CCCEEECCEEEECcCCCCChHHHHh-h-hhhcCCCcEEECcc-ccCCCCCEEEeeeEEEeeccCCCCceechhH
Confidence 444 6778999999999999999887765 3 56654443333333 34589999999998742 246
Q ss_pred HHHHHHHHHHHHHHcCCC
Q psy12350 1017 NLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 1017 ~~~e~qa~~~a~~l~g~~ 1034 (1129)
+.+..||+.+|..+.|..
T Consensus 300 ~~A~~qg~~aa~~i~g~~ 317 (447)
T 1nhp_A 300 TNARKQGRFAVKNLEEPV 317 (447)
T ss_dssp HHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHhhcCCC
Confidence 899999999999998753
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-18 Score=209.19 Aligned_cols=184 Identities=15% Similarity=0.186 Sum_probs=125.5
Q ss_pred hhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCcc-chhh
Q psy12350 832 DVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD-ITLD 910 (1129)
Q Consensus 832 ~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~-~~~~ 910 (1129)
.++++|+.|+.|++||.+.+ .+++.++.+. ...+|+|+|||+|.+|+|+|..|++.|.+||++.+. ..++ +.+.
T Consensus 253 lviAtGs~p~~p~i~G~~~~---~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~~d~~ 327 (598)
T 2x8g_A 253 IILATGERPKYPEIPGAVEY---GITSDDLFSL-PYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRGFDQQ 327 (598)
T ss_dssp EEECCCEEECCCSSTTHHHH---CEEHHHHTTC-SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHH
T ss_pred EEEeCCCCCCCCCCCCcccc---eEcHHHHhhC-ccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCcCCHH
Confidence 44459999999999997643 4566554433 235789999999999999999999999999999886 2222 2222
Q ss_pred hhccccEEEEecCCccccccCCCCCeEEcCC--eeEEe--------C---CcE--E--ecCCcEee--ccEEEEccCccC
Q psy12350 911 IATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELT--------P---TGV--R--FQDGSYEQ--VDIILCCTGYSN 971 (1129)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~--------~---~~V--~--~~dG~~~~--~D~VI~aTG~~~ 971 (1129)
+.....+. +. ..+|++..+ +.+++ + +.+ . +.+|++++ +|.||+|+|++|
T Consensus 328 ~~~~~~~~---------l~---~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p 395 (598)
T 2x8g_A 328 MAEKVGDY---------ME---NHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREP 395 (598)
T ss_dssp HHHHHHHH---------HH---HTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEE
T ss_pred HHHHHHHH---------HH---hCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCcc
Confidence 22211111 00 114555543 34442 2 223 2 35887664 999999999999
Q ss_pred cCCCCC-CCCCeeecCCcccccccceeecCCCCcEEEcccccc--chhHHHHHHHHHHHHHHcCC
Q psy12350 972 HYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT--LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 972 ~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+.++|. +..|+++++++...+..+ +.++.|+||++|++... ...+.+..||+.+|..+.|.
T Consensus 396 ~~~~l~~~~~gl~~~~~G~i~vd~~-~~ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 459 (598)
T 2x8g_A 396 QLSKVLCETVGVKLDKNGRVVCTDD-EQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAG 459 (598)
T ss_dssp CGGGTBCGGGCCCBCTTSCBCCCTT-SBCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHC
T ss_pred ccCccCchhcCceECCCCcEEeCCC-CcCCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhcC
Confidence 988763 446777766554444443 35689999999999432 46689999999999988753
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-18 Score=211.55 Aligned_cols=257 Identities=16% Similarity=0.069 Sum_probs=171.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC-CCCCCCCCCCCccccccCccccccccccccccCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT-EHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYG 818 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~-~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~ 818 (1129)
.+++|||+|++|+++|..|.+.| ++|+|||+++.+||+|... ..++.. .+..+.......+..+.+..
T Consensus 392 ~~VvIIGgG~AGl~aA~~La~~G--~~V~liE~~~~~GG~~~~~~~~p~~~---------~~~~~~~~~~~~~~~~~gv~ 460 (690)
T 3k30_A 392 ARVLVVGAGPSGLEAARALGVRG--YDVVLAEAGRDLGGRVTQESALPGLS---------AWGRVKEYREAVLAELPNVE 460 (690)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSCTHHHHHHTSTTCG---------GGGHHHHHHHHHHHTCTTEE
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCEeeeccCCCchh---------HHHHHHHHHHHHHHHcCCCE
Confidence 46789999999999999999999 9999999999999998753 122210 01111111111111111111
Q ss_pred CCCCC------CCCCCChhhhhhccCC--------CCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEc--CCccHH
Q psy12350 819 HKGNA------DKSYIGAKDVLENYNH--------PIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVG--SGQSGL 882 (1129)
Q Consensus 819 ~~~~~------~~~~~~~~~v~~~~~~--------P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG--~G~Sg~ 882 (1129)
+.... ...+.....++.+|+. |..|++||.+. ..++++.++.+.....+|+|+||| +|.+|+
T Consensus 461 ~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~--~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~ 538 (690)
T 3k30_A 461 IYRESPMTGDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEG--MQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGG 538 (690)
T ss_dssp EESSCCCCHHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTT--SEEECHHHHHTTCCCSSSEEEEEECSCSSHHH
T ss_pred EEECCeecHHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCC--CcEEcHHHHhCCCCCCCCEEEEEcCCCCccHH
Confidence 11110 0011112223347877 55788999864 568888777766667789999999 999999
Q ss_pred HHHHHHHhcCCEEEEEecCCCCccchh--hhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCcEEec-----
Q psy12350 883 DITLDIATTGKQAVVVGSGQSGLDITL--DIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTGVRFQ----- 953 (1129)
Q Consensus 883 eiA~~la~~~~~V~vv~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~V~~~----- 953 (1129)
|+|..|++.+++|+++.+.+..+.... ....... ..+. ..+|+++.+ |.+++++++.+.
T Consensus 539 e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~---------~~l~---~~GV~i~~~~~V~~i~~~~~~v~~~~~~ 606 (690)
T 3k30_A 539 VVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQ---------RRLI---ENGVARVTDHAVVAVGAGGVTVRDTYAS 606 (690)
T ss_dssp HHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHH---------HHHH---HTTCEEEESEEEEEEETTEEEEEETTTC
T ss_pred HHHHHHHhCCCeeEEEecccccccccccchhHHHHH---------HHHH---HCCCEEEcCcEEEEEECCeEEEEEccCC
Confidence 999999999999999988765443211 0000000 0111 126777665 889988876553
Q ss_pred CCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccchhHHHHHHHHHHHHHHcCC
Q psy12350 954 DGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTLLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 954 dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+++++++|.||+|||++|+..++.+ ++ ... . .++.|+||++|++.....+..+..||+.+|..+.+.
T Consensus 607 ~~~~i~aD~VV~A~G~~p~~~l~~~-l~----~~~----~----~t~~~~VyaiGD~~~~~~~~~A~~~g~~aa~~i~~~ 673 (690)
T 3k30_A 607 IERELECDAVVMVTARLPREELYLD-LV----ARR----D----AGEIASVRGIGDAWAPGTIAAAVWSGRRAAEEFDAV 673 (690)
T ss_dssp CEEEEECSEEEEESCEEECCHHHHH-HH----HHH----H----HTSCSEEEECGGGTSCBCHHHHHHHHHHHHHHTTCC
T ss_pred eEEEEECCEEEECCCCCCChHHHHH-Hh----hhh----c----ccCCCCEEEEeCCCchhhHHHHHHHHHHHHHHHHhh
Confidence 4567899999999999999765542 11 100 0 568999999999987777777999999999999876
Q ss_pred C
Q psy12350 1034 I 1034 (1129)
Q Consensus 1034 ~ 1034 (1129)
.
T Consensus 674 l 674 (690)
T 3k30_A 674 L 674 (690)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-18 Score=212.39 Aligned_cols=260 Identities=15% Similarity=0.157 Sum_probs=170.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC-CCCCCCCCCCccccccCccccccccccccc----
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE-HIGCDQYGLPVHSSMYKSLKTNLPKDLMEL---- 814 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~-~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~---- 814 (1129)
.+++|||+|++|+.+|..|.+.| ++|+|||+++.+||+|.+.. .|+. + .|..+.......+..+
T Consensus 390 ~~VvIIGgGpAGl~aA~~L~~~G--~~Vtlie~~~~~GG~~~~~~~~pg~-----~----~~~~~~~~~~~~i~~~~~~~ 458 (729)
T 1o94_A 390 DSVLIVGAGPSGSEAARVLMESG--YTVHLTDTAEKIGGHLNQVAALPGL-----G----EWSYHRDYRETQITKLLKKN 458 (729)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTTTTHHHHTTSTTC-----G----GGHHHHHHHHHHHHHHHHHS
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCcCCeeeecccCCCh-----H----HHHHHHHHHHHHHHHhhccc
Confidence 36799999999999999999999 99999999999999997532 2221 1 1111000000000000
Q ss_pred -cCCCCCCC------CCCCCCChhhhhhccCC--------CCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEc--C
Q psy12350 815 -CGYGHKGN------ADKSYIGAKDVLENYNH--------PIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVG--S 877 (1129)
Q Consensus 815 -~~~~~~~~------~~~~~~~~~~v~~~~~~--------P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG--~ 877 (1129)
....+... ....+.....++.+|+. |+.|++||.++|...++++.++.+.....+|+|+||| +
T Consensus 459 ~~~v~i~~~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~Gg 538 (729)
T 1o94_A 459 KESQLALGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADT 538 (729)
T ss_dssp TTCEEECSCCCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCC
T ss_pred CCceEEEeCeEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCC
Confidence 00001000 00012222334448887 6788999998766778888777655556789999999 9
Q ss_pred CccHHHHHHHHHhcCCEEEEEecCCCCccc--hhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCcEEe-
Q psy12350 878 GQSGLDITLDIATTGKQAVVVGSGQSGLDI--TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTGVRF- 952 (1129)
Q Consensus 878 G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~V~~- 952 (1129)
|.+|+|+|..|++.|++||++.+.+ .+.. .+....... ..+. ..+|+++.+ +.+++++++.+
T Consensus 539 G~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~~~~~~---------~~l~---~~GV~i~~~~~v~~i~~~~v~~~ 605 (729)
T 1o94_A 539 YFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLEYPNMM---------RRLH---ELHVEELGDHFCSRIEPGRMEIY 605 (729)
T ss_dssp SSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTCHHHHH---------HHHH---HTTCEEECSEEEEEEETTEEEEE
T ss_pred CchHHHHHHHHHHcCCEEEEEeccc-ccccccccccHHHHH---------HHHH---hCCCEEEcCcEEEEEECCeEEEE
Confidence 9999999999999999999999876 3321 110000000 0010 126777765 88888776554
Q ss_pred ---cCC-cE------------------eeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccc
Q psy12350 953 ---QDG-SY------------------EQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVP 1010 (1129)
Q Consensus 953 ---~dG-~~------------------~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~ 1010 (1129)
.++ ++ +++|.||+|+|++++..++.+ ++.. .+.+ +.++.|+||++|++
T Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~-l~~~------vd~~---~~t~~~~VyAiGD~ 675 (729)
T 1o94_A 606 NIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNE-LKAR------ESEW---AENDIKGIYLIGDA 675 (729)
T ss_dssp ETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHH-HHHT------GGGT---GGGTCCEEEECGGG
T ss_pred EecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHHH-Hhhh------cccc---cccCCCCeEEEeCc
Confidence 233 22 899999999999999775542 2111 1122 23588999999999
Q ss_pred cccchhHHHHHHHHHHHHHHcCC
Q psy12350 1011 RHTLLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1011 ~~~~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.....+..+..||+.+|..+.+.
T Consensus 676 ~~~~~~~~A~~~G~~aA~~i~~~ 698 (729)
T 1o94_A 676 EAPRLIADATFTGHRVAREIEEA 698 (729)
T ss_dssp TSCCCHHHHHHHHHHHHHTTTSS
T ss_pred cchhhHHHHHHHHHHHHHHhhhh
Confidence 87666778999999999998764
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.3e-17 Score=190.00 Aligned_cols=277 Identities=14% Similarity=0.112 Sum_probs=160.3
Q ss_pred cCccccccCCchhhHHHHHHh-h------CCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTE-A------GNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLM 812 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~-~------g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~ 812 (1129)
.+++|||+|++|+.+|..|.+ . + .+|+|||+.+.+||+|.+...|+. +....+...+.....+.-.
T Consensus 4 ~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g--~~V~lie~~~~~gg~~~~gv~p~~-----~~~~~~~~~~~~~~~~~~v 76 (456)
T 1lqt_A 4 YYIAIVGSGPSAFFAAASLLKAADTTEDLD--MAVDMLEMLPTPWGLVRSGVAPDH-----PKIKSISKQFEKTAEDPRF 76 (456)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCC--EEEEEEESSSSCSTHHHHTSCTTC-----TGGGGGHHHHHHHHTSTTE
T ss_pred CEEEEECcCHHHHHHHHHHHhhCccccCCC--CeEEEEecCCCCCCccccccCCCC-----CCHHHHHHHHHHHHhcCCC
Confidence 367999999999999999999 7 7 999999999999999976432221 0001111111000000000
Q ss_pred cc-cCCCCCCCCCC----CCCChhhhhhccCC-CCCCCCCCCCCCCCcEEeeccC-----------CCCCCCCCCeEEEE
Q psy12350 813 EL-CGYGHKGNADK----SYIGAKDVLENYNH-PIYPEFKGKDMCQIPILHSRDY-----------RTPEPFAGKQAVVV 875 (1129)
Q Consensus 813 ~~-~~~~~~~~~~~----~~~~~~~v~~~~~~-P~~P~i~G~~~f~g~~~hs~~~-----------~~~~~~~gk~VvVV 875 (1129)
.| .+..+... .. .+.....++.+|+. |+.|++||.+ +.| ++|+.++ ++..++.+|+|+||
T Consensus 77 ~~~~~v~v~~~-v~~~~~~~~~d~lViAtG~~~~~~~~ipG~~-~~g-v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVI 153 (456)
T 1lqt_A 77 RFFGNVVVGEH-VQPGELSERYDAVIYAVGAQSDRMLNIPGED-LPG-SIAAVDFVGWYNAHPHFEQVSPDLSGARAVVI 153 (456)
T ss_dssp EEEESCCBTTT-BCHHHHHHHSSEEEECCCCCEECCCCCTTTT-STT-EEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEE
T ss_pred EEEeeEEECCE-EEECCCeEeCCEEEEeeCCCCCCCCCCCCCC-CCC-cEEHHHHHhhhhcCcccccchhhcCCCEEEEE
Confidence 00 01001000 00 00011122238887 7888999986 554 6776554 33344679999999
Q ss_pred cCCccHHHHHHHHHhc--------------------C-CEEEEEecCCCCcc-chh-hhhc---ccc-EEEEe-cCC---
Q psy12350 876 GSGQSGLDITLDIATT--------------------G-KQAVVVGSGQSGLD-ITL-DIAT---RAS-TVFLS-HHS--- 924 (1129)
Q Consensus 876 G~G~Sg~eiA~~la~~--------------------~-~~V~vv~~~~~~~~-~~~-~~~~---~~~-~~~~~-~~~--- 924 (1129)
|+|++|+|+|..|++. + ++|+++.+...... +.+ .+++ ... ...+. ..+
T Consensus 154 G~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~ 233 (456)
T 1lqt_A 154 GNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGI 233 (456)
T ss_dssp CCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTC
T ss_pred CCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccc
Confidence 9999999999999974 3 69999988654321 111 0000 000 00000 000
Q ss_pred ---------------cccc----ccC---CCCCeEEcCC--eeEEeCC----cEEec----------------CC--cEe
Q psy12350 925 ---------------ERVT----SLC---LPNNVVLKPD--VAELTPT----GVRFQ----------------DG--SYE 958 (1129)
Q Consensus 925 ---------------~~~~----~~~---~~~~V~~~~~--i~~v~~~----~V~~~----------------dG--~~~ 958 (1129)
.+.+ ... -..+|+++.. +.++.++ +|++. +| +++
T Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i 313 (456)
T 1lqt_A 234 TDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREEL 313 (456)
T ss_dssp CHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEE
T ss_pred hhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEE
Confidence 0000 000 0135776655 6777654 26664 45 358
Q ss_pred eccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc--hhHHHHHHHHHHHHHHc
Q psy12350 959 QVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL--LFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 959 ~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~--~~~~~e~qa~~~a~~l~ 1031 (1129)
++|.||+|+||+++. + .++++++++..........++.|+||++|++...+ ....+..||+.+|..+.
T Consensus 314 ~~d~vi~a~G~~p~~--l---~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~ 383 (456)
T 1lqt_A 314 PAQLVVRSVGYRGVP--T---PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLI 383 (456)
T ss_dssp ECSEEEECSCEECCC--C---TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHH
T ss_pred EcCEEEEccccccCC--C---CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999984 3 24555544332333333445899999999986432 34567788888887765
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-17 Score=196.04 Aligned_cols=260 Identities=13% Similarity=0.146 Sum_probs=155.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+|||||+|||+||.+|++ . ++|+|||+++.+||.|.+... .... ++
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~--~-~~V~vie~~~~~GG~~~~~~~------------------------~~~g---~~ 157 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQ--Y-LTVALIEERGWLGGDMWLKGI------------------------KQEG---FN 157 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTT--T-CCEEEECTTSSSSCSGGGTCS------------------------EETT---TT
T ss_pred cCCEEEECccHHHHHHHHHHHh--c-CCEEEEeCCCCCCCeeecccc------------------------ccCC---CC
Confidence 3689999999999999999999 5 899999999999999874100 0000 10
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
. ...++.+.+.+.. ..++ .++++++|..+++. ...+.+.....+......|| +||+||
T Consensus 158 -----~----~~~~~~~~l~~~l-~~~v--~~~~~~~v~~i~~~-----~~~~~~~~~~~~~~~~~~~d-----~lvlAt 215 (493)
T 1y56_A 158 -----K----DSRKVVEELVGKL-NENT--KIYLETSALGVFDK-----GEYFLVPVVRGDKLIEILAK-----RVVLAT 215 (493)
T ss_dssp -----E----EHHHHHHHHHHTC-CTTE--EEETTEEECCCEEC-----SSSEEEEEEETTEEEEEEES-----CEEECC
T ss_pred -----C----CHHHHHHHHHHHH-hcCC--EEEcCCEEEEEEcC-----CcEEEEEEecCCeEEEEECC-----EEEECC
Confidence 0 2234443333222 2233 67889999887752 22233322222322356789 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|..|++||.. .+| ...... +. ...+.+.....
T Consensus 216 G--a~~~~~~~~g~~---~~g---------------v~~~~~----------------------~~---~~~~~~~~~~~ 250 (493)
T 1y56_A 216 G--AIDSTMLFENND---MPG---------------VFRRDF----------------------AL---EVMNVWEVAPG 250 (493)
T ss_dssp C--EEECCCCCTTTT---STT---------------EEEHHH----------------------HH---HHHHTSCBCSC
T ss_pred C--CCccCCCCCCCC---CCC---------------EEEcHH----------------------HH---HHHHhcccCCC
Confidence 9 778888787632 111 111000 00 00000000112
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCCCeEEcCCceEEcCC----ceEEcCCCE
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPNNVVKKPDIAELTPT----GVRFQDGSY 324 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~~i~~~~~v~~~~~~----~v~~~dg~~ 324 (1129)
++++| +|+|++|+| ..+.+.|-+ +..+..|++++++ .|.++||++
T Consensus 251 ~~vvV-----------iGgG~~gle--~~l~~~GV~------------------v~~~~~v~~i~~~~~v~~v~~~~g~~ 299 (493)
T 1y56_A 251 RKVAV-----------TGSKADEVI--QELERWGID------------------YVHIPNVKRVEGNEKVERVIDMNNHE 299 (493)
T ss_dssp SEEEE-----------ESTTHHHHH--HHHHHHTCE------------------EEECSSEEEEECSSSCCEEEETTCCE
T ss_pred CEEEE-----------ECCCHHHHH--HHHHhCCcE------------------EEeCCeeEEEecCCceEEEEeCCCeE
Confidence 34444 799999998 334333433 3334455566543 267788999
Q ss_pred eecCEEEEcccccccCCCCCCCCCe--EeecCcccc-cccccccCCCCCeEEecccccccc-cccccceeeehhhcccc
Q psy12350 325 EQVDIILYCTGYTYRYPFLHESCGI--KVVNKNVQP-LYKHLINIEHPSMCIIGYTYRYPF-LHESCGIKVVNKNVQPL 399 (1129)
Q Consensus 325 ~~~D~VI~atG~~~~~~~l~~~~~~--~~~~~~~~~-l~~~~~~~~~p~l~~~G~~~~~~~-~~~~~~~~~~a~~~~~~ 399 (1129)
+++|.||+|+|++++..++.. .++ ..++...++ ...++- ++|++|.+|.....+. .....|++.+|.++.+.
T Consensus 300 i~aD~Vv~a~G~~p~~~l~~~-~g~~~~~~~~g~i~~vd~~~~--s~~~vya~GD~~~~~~~~~A~~~g~~aa~~i~~~ 375 (493)
T 1y56_A 300 YKVDALIFADGRRPDINPITQ-AGGKLRFRRGYYSPVLDEYHR--IKDGIYVAGSAVSIKPHYANYLEGKLVGAYILKE 375 (493)
T ss_dssp EECSEEEECCCEEECCHHHHH-TTCCEEEETTEEEECCCTTSE--EETTEEECSTTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEeCEEEECCCcCcCchHHHh-cCCCccccCCceeeccccccC--cCCCEEEEeccCCccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887653 333 333444322 222221 6788999998764432 23347888888887654
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=9.9e-18 Score=215.85 Aligned_cols=284 Identities=13% Similarity=0.169 Sum_probs=164.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.+||+|||||||||+||.+|++ .|+ +|+|||+.+.+||++.+. .+.|
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~--~G~~~Vtv~E~~~~~GG~~~~~------------------------------ip~~ 234 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLAR--LGYSDITIFEKQEYVGGLSTSE------------------------------IPQF 234 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHH--TTCCCEEEEESSSSCSTHHHHT------------------------------SCTT
T ss_pred CCEEEEECccHHHHHHHHHHHh--cCCCcEEEEeCCCCCCcccccc------------------------------CCcc
Confidence 4799999999999999999999 557 799999999999987640 0111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
. ...++.++..++.++.|+ .+++++.|.. +.+++. ......|| +||||
T Consensus 235 ~----------~~~~~~~~~~~~~~~~gv--~~~~~~~v~~----------~~v~~~-----~~~~~~~d-----~vvlA 282 (1025)
T 1gte_A 235 R----------LPYDVVNFEIELMKDLGV--KIICGKSLSE----------NEITLN-----TLKEEGYK-----AAFIG 282 (1025)
T ss_dssp T----------SCHHHHHHHHHHHHTTTC--EEEESCCBST----------TSBCHH-----HHHHTTCC-----EEEEC
T ss_pred c----------CCHHHHHHHHHHHHHCCc--EEEcccEecc----------ceEEhh-----hcCccCCC-----EEEEe
Confidence 1 112456666677777776 7888877631 111111 11224589 99999
Q ss_pred cccCC-CCCcccc-ccchhhhcccccccCCCCCccccccccc-chhhhcccccccCCCCCCccchhcccccccccccccc
Q psy12350 168 QGHVT-LPSKAEM-LADTEQDVRGRLREGQNPNAFHIMGQRS-EKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFT 244 (1129)
Q Consensus 168 tG~~~-~p~~p~i-~g~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 244 (1129)
|| + .|..+++ +|... ..+.++ ..|+..+..... ... ......+.
T Consensus 283 tG--a~~p~~l~~~~G~~~-----------------~~gv~~a~~~L~~~~~~~~------------~~~--~~~~~~~~ 329 (1025)
T 1gte_A 283 IG--LPEPKTDDIFQGLTQ-----------------DQGFYTSKDFLPLVAKSSK------------AGM--CACHSPLP 329 (1025)
T ss_dssp CC--CCEECCCGGGTTCCT-----------------TTTEEEHHHHHHHHHHHHC------------BTT--BSCCCCCC
T ss_pred cC--CCCCCCCCCCCCCCC-----------------CCCEEEhHHHHHHHHhhcc------------ccc--cccccccc
Confidence 99 5 4665554 23110 011111 111110000000 000 00000010
Q ss_pred cccccceeEeeceeeeecCCCCCCCCcccchhhhcccc-cEEEEccccCC-cccccC-------CC--CeEEcCCceEEc
Q psy12350 245 EFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA-TTVFLSHHSEH-VKKLRF-------PN--NVVKKPDIAELT 313 (1129)
Q Consensus 245 ~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~-~~V~lv~r~~~-~~~~~~-------~~--~i~~~~~v~~~~ 313 (1129)
...++++ | ||||++|+|+|..+++.| ++||+++|++. +++... .. ++.....++++.
T Consensus 330 -~~~~~Vv-------V----IGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~ 397 (1025)
T 1gte_A 330 -SIRGAVI-------V----LGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVI 397 (1025)
T ss_dssp -CCCSEEE-------E----ECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHHHHHHHTTCEEECSEEEEEEE
T ss_pred -ccCCcEE-------E----ECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHHHHHHHHHcCCEEEeCCCceEEE
Confidence 0123333 3 899999999999999998 49999999873 322111 01 233344455554
Q ss_pred C--Cc---eEEc------CC---------CEeecCEEEEccccccc-CCCCCCCCCeEeecCcccccccccccCCCCCeE
Q psy12350 314 P--TG---VRFQ------DG---------SYEQVDIILYCTGYTYR-YPFLHESCGIKVVNKNVQPLYKHLINIEHPSMC 372 (1129)
Q Consensus 314 ~--~~---v~~~------dg---------~~~~~D~VI~atG~~~~-~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~ 372 (1129)
+ +. |.+. +| .++++|.||+|+|++++ ..++.+..++.++++..+......+.++.|++|
T Consensus 398 ~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~Vf 477 (1025)
T 1gte_A 398 VKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVF 477 (1025)
T ss_dssp EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEE
T ss_pred ccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEE
Confidence 2 21 3332 22 25799999999999864 444432234555544433332222336789999
Q ss_pred Eecccccccc--cccccceeeehhhcccccc
Q psy12350 373 IIGYTYRYPF--LHESCGIKVVNKNVQPLYK 401 (1129)
Q Consensus 373 ~~G~~~~~~~--~~~~~~~~~~a~~~~~~~~ 401 (1129)
++|.....|. ..+..||+.+|.++.+.+.
T Consensus 478 A~GD~~~~~~~~~~A~~~G~~aA~~i~~~L~ 508 (1025)
T 1gte_A 478 AGGDIVGMANTTVESVNDGKQASWYIHKYIQ 508 (1025)
T ss_dssp ECSGGGCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865322 3344788888888876554
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=7.8e-17 Score=187.68 Aligned_cols=128 Identities=16% Similarity=0.161 Sum_probs=82.7
Q ss_pred cchhhhccc--ccEEEEccccCCcccc-------------cCC-C--CeEEcCCceEEcCC----ceEEcCCCEeecCEE
Q psy12350 273 DITHDISTE--ATTVFLSHHSEHVKKL-------------RFP-N--NVVKKPDIAELTPT----GVRFQDGSYEQVDII 330 (1129)
Q Consensus 273 e~A~~l~~~--~~~V~lv~r~~~~~~~-------------~~~-~--~i~~~~~v~~~~~~----~v~~~dg~~~~~D~V 330 (1129)
++|..+... ..+|+++++.+.+... .+. . ++..+..++.++.+ .|.++||+++++|.|
T Consensus 171 ~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~v 250 (401)
T 3vrd_B 171 QIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVI 250 (401)
T ss_dssp HHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEEEETTSCEEECSEE
T ss_pred HHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccceEEEcCCCcEEEeeEE
Confidence 344444433 3789999887765221 111 1 34556667766532 388899999999999
Q ss_pred EEcccccccCCCCCCCCCeEeecCccccccccc-ccCCCCCeEEeccccc-ccc----cccccceeeehhhcccccccc
Q psy12350 331 LYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHL-INIEHPSMCIIGYTYR-YPF----LHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 331 I~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~~p~l~~~G~~~~-~~~----~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
++|+|.+++ +++.+ .++ .+++..+...+++ ..+++|++|.+|.... .|. ....+||+.+|+++.+.+.|+
T Consensus 251 i~~~g~~~~-~~~~~-~gl-~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~~~l~G~ 326 (401)
T 3vrd_B 251 NLIPPQRAG-KIAQS-ASL-TNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVVALLKGE 326 (401)
T ss_dssp EECCCEEEC-HHHHH-TTC-CCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEecCcCCc-hhHhh-ccc-cccCCCEEECCCcceecCCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999876 44442 233 2344444444443 3578899999998642 221 223489999999999988876
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.8e-16 Score=182.71 Aligned_cols=278 Identities=13% Similarity=0.128 Sum_probs=156.4
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccc-cCCCC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMEL-CGYGH 819 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~-~~~~~ 819 (1129)
+++|||+|++|+.+|..|.+.|++.+|+|||+++.+||.|.+...|.. +....+...+.....+.-..+ .+...
T Consensus 8 ~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~-----~~~~~~~~~~~~~~~~~gv~~~~~~~v 82 (460)
T 1cjc_A 8 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDH-----PEVKNVINTFTQTARSDRCAFYGNVEV 82 (460)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTC-----GGGGGHHHHHHHHHTSTTEEEEBSCCB
T ss_pred eEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCC-----ccHHHHHHHHHHHHHhCCcEEEeeeEE
Confidence 579999999999999999999877899999999999999976422211 000000000000000000000 00000
Q ss_pred CCCCCC----CCCChhhhhhccCCC-CCCCCCCCCCCCCcEEeeccC----------CCC-CCCCCCeEEEEcCCccHHH
Q psy12350 820 KGNADK----SYIGAKDVLENYNHP-IYPEFKGKDMCQIPILHSRDY----------RTP-EPFAGKQAVVVGSGQSGLD 883 (1129)
Q Consensus 820 ~~~~~~----~~~~~~~v~~~~~~P-~~P~i~G~~~f~g~~~hs~~~----------~~~-~~~~gk~VvVVG~G~Sg~e 883 (1129)
... .. .+.....++.+|+.| +.|++||.+ .+ .++++.++ ... .++.+|+|+|||+|++|+|
T Consensus 83 ~~~-V~~~~~~~~~d~lVlAtGs~~~~~~~ipG~~-~~-gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e 159 (460)
T 1cjc_A 83 GRD-VTVQELQDAYHAVVLSYGAEDHQALDIPGEE-LP-GVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALD 159 (460)
T ss_dssp TTT-BCHHHHHHHSSEEEECCCCCEECCCCCTTTT-ST-TEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHH
T ss_pred eeE-EEeccceEEcCEEEEecCcCCCCCCCCCCCC-CC-cEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHH
Confidence 000 00 000111222399985 889999985 33 36665444 111 2457899999999999999
Q ss_pred HHHHHH--------------------hcCC-EEEEEecCCCCc-cchh-hhhc---ccc-EEEEe-cC------------
Q psy12350 884 ITLDIA--------------------TTGK-QAVVVGSGQSGL-DITL-DIAT---RAS-TVFLS-HH------------ 923 (1129)
Q Consensus 884 iA~~la--------------------~~~~-~V~vv~~~~~~~-~~~~-~~~~---~~~-~~~~~-~~------------ 923 (1129)
+|..|+ +.+. +|+++.+..... .+++ .+.. ... +..+. ..
T Consensus 160 ~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~~~ 239 (460)
T 1cjc_A 160 VARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAA 239 (460)
T ss_dssp HHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSC
T ss_pred HHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhhcc
Confidence 999999 4565 899998865431 1100 0000 000 00000 00
Q ss_pred -----Cccc----ccc-----------CCCCCeEEcCC--eeEEeCC-------cEEec---------------CC--cE
Q psy12350 924 -----SERV----TSL-----------CLPNNVVLKPD--VAELTPT-------GVRFQ---------------DG--SY 957 (1129)
Q Consensus 924 -----~~~~----~~~-----------~~~~~V~~~~~--i~~v~~~-------~V~~~---------------dG--~~ 957 (1129)
..+. ... .-+.+|+++.. +.++.++ +|++. +| ++
T Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~ 319 (460)
T 1cjc_A 240 RPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVED 319 (460)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEE
Confidence 0000 000 00125666554 5666432 24443 35 46
Q ss_pred eeccEEEEccCccCcCCCCCCCCCe-eecCCcccccccceeecCCCCcEEEccccccc--hhHHHHHHHHHHHHHHc
Q psy12350 958 EQVDIILCCTGYSNHYPFLHESCGI-KVVNKNVQPLYKHTINIEHPTMFILGVPRHTL--LFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 958 ~~~D~VI~aTG~~~~~~fl~~~~g~-~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~--~~~~~e~qa~~~a~~l~ 1031 (1129)
+++|.||+|+||+++. + .|+ ++++++......+....+.|+||++|++.... .+..+..||+.+|..+.
T Consensus 320 i~~d~Vi~a~G~~p~~--l---~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~~i~ 391 (460)
T 1cjc_A 320 LPCGLVLSSIGYKSRP--I---DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILL 391 (460)
T ss_dssp EECSEEEECCCEECCC--C---CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEcCEEEECCCCCCCC--C---CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCCccHHHHHHHHHHHHHHHH
Confidence 8999999999999984 3 355 56543332233333333379999999987532 35678888888887765
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.1e-17 Score=189.63 Aligned_cols=270 Identities=14% Similarity=0.108 Sum_probs=161.0
Q ss_pred CccccccCCchhhHHHHHHh---hCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCcccccccc--------
Q psy12350 741 PNIVDRHGPGGLTATKRLTE---AGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPK-------- 809 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~---~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~-------- 809 (1129)
.++|||+|++|+++|..|++ .| ++|+|+|+++..+.......... +..........+.....+
T Consensus 3 ~VvIIGgG~aGl~aA~~L~~~~~~g--~~V~vie~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~gv~~~~~ 76 (409)
T 3h8l_A 3 KVLVLGGRFGALTAAYTLKRLVGSK--ADVKVINKSRFSYFRPALPHVAI----GVRDVDELKVDLSEALPEKGIQFQEG 76 (409)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHGGG--SEEEEEESSSEEEECCSSCCCCS----SCCCCCCEEEEHHHHTGGGTCEEEEC
T ss_pred eEEEECCCHHHHHHHHHHHhhCCCC--CeEEEEeCCCCceeccchhhccc----CCcCHHHHHHHHHHHHhhCCeEEEEe
Confidence 57899999999999999999 67 99999999987654322111110 000000000000000000
Q ss_pred cccccc--CCCCCCCCCCC----CCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCC------CCeEEEEcC
Q psy12350 810 DLMELC--GYGHKGNADKS----YIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFA------GKQAVVVGS 877 (1129)
Q Consensus 810 ~~~~~~--~~~~~~~~~~~----~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~------gk~VvVVG~ 877 (1129)
...... ........... +.....++.+|+.|+.|.+||+++ ...|...+.+...+. .++++|||+
T Consensus 77 ~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ipG~~~---~~~~~~~~~~~~~~~~~l~~~~~~~vViG~ 153 (409)
T 3h8l_A 77 TVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDK---YGYSVCEPEFATKLREKLESFQGGNIAIGS 153 (409)
T ss_dssp EEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSBTHHH---HCEESSSTTHHHHHHHHHHHCCSEEEEEEE
T ss_pred eEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCCChhh---cCcCcCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 000000 00000000000 222334455999999999999875 344555444332221 266779999
Q ss_pred C-------------------c------cHHHHHHHHH----hcC----CEEEEEecCCCCccchhhhhccccEEEEecCC
Q psy12350 878 G-------------------Q------SGLDITLDIA----TTG----KQAVVVGSGQSGLDITLDIATRASTVFLSHHS 924 (1129)
Q Consensus 878 G-------------------~------Sg~eiA~~la----~~~----~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 924 (1129)
| . .|+|+|..++ +.| .+|+++.+.+....+.+.+.....+.+.
T Consensus 154 G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~---- 229 (409)
T 3h8l_A 154 GPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDLSPNSRKAVASIYN---- 229 (409)
T ss_dssp CCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSSSSTTBCHHHHHHHHHHHH----
T ss_pred cccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCccccccCHHHHHHHHHHHH----
Confidence 9 2 3788886554 456 4899998866211122222211111110
Q ss_pred ccccccCCCCCeEEcCC--eeEEeCCcEEecCCcEeeccEEEEccCccCcCCCCCCC-CCeeecCCcccccccceeecCC
Q psy12350 925 ERVTSLCLPNNVVLKPD--VAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHES-CGIKVVNKNVQPLYKHTINIEH 1001 (1129)
Q Consensus 925 ~~~~~~~~~~~V~~~~~--i~~v~~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~-~g~~~~~~~~~~ly~~~~~~~~ 1001 (1129)
..+|+++.+ |+++++++|+++||+++++|.||+|+|++++ +++... .++ .++++...+...+..+++
T Consensus 230 --------~~gV~~~~~~~v~~i~~~~v~~~~g~~~~~D~vi~a~G~~~~-~~l~~~~~~l-~~~~G~i~vd~~~~~~~~ 299 (409)
T 3h8l_A 230 --------QLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTGN-PALKNSTPDL-VDDGGFIPTDLNMVSIKY 299 (409)
T ss_dssp --------HHTCEEECSCCEEEECSSEEEETTSCEEECSEEEEECCEECC-HHHHTSCGGG-SCTTSCBCBBTTSBBSSC
T ss_pred --------HCCCEEEcCCceEEECCCeEEECCCCEEeeeEEEECCCCCcc-HHHHhccccC-cCCCCCEEeCcccccCCC
Confidence 126777754 9999999999999999999999999999997 556542 133 233343455555556689
Q ss_pred CCcEEEcccccc---chhHHHHHHHHHHHHHHcCC
Q psy12350 1002 PTMFILGVPRHT---LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1002 p~l~~iG~~~~~---~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
||||++|++... .....++.||+.+|+.+.+.
T Consensus 300 ~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~ 334 (409)
T 3h8l_A 300 DNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANR 334 (409)
T ss_dssp TTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999998752 45688999999999988643
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.8e-17 Score=192.37 Aligned_cols=185 Identities=11% Similarity=0.126 Sum_probs=119.4
Q ss_pred hccCCCCCCCCCCCC--CCCCcEEeeccCCCCCC-----CCCCeEEEEcCCccHHHHHHHHHh----cCCEEEEEecCCC
Q psy12350 835 ENYNHPIYPEFKGKD--MCQIPILHSRDYRTPEP-----FAGKQAVVVGSGQSGLDITLDIAT----TGKQAVVVGSGQS 903 (1129)
Q Consensus 835 ~~~~~P~~P~i~G~~--~f~g~~~hs~~~~~~~~-----~~gk~VvVVG~G~Sg~eiA~~la~----~~~~V~vv~~~~~ 903 (1129)
.+|+.|+.|+++|.. .+...+.+.....+... ..+|+|+|||+|.+|+|+|..|++ .+.+|+++.+.+.
T Consensus 139 ATGs~p~~~~~~~~~~~~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~ 218 (493)
T 1m6i_A 139 ATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG 218 (493)
T ss_dssp CCCEEECCCHHHHTSCHHHHHTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCCCCCCCCCCcccccccccCceEEEcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcc
Confidence 399999988766532 11123333222211111 148999999999999999999987 4788999977543
Q ss_pred Ccc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC--C--cEEecCCcEeeccEEEEccCccCcCCC
Q psy12350 904 GLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP--T--GVRFQDGSYEQVDIILCCTGYSNHYPF 975 (1129)
Q Consensus 904 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~--~V~~~dG~~~~~D~VI~aTG~~~~~~f 975 (1129)
.+. +.+.+.....+ .+. ..+|+++.+ |.+++. + .|++.||+++++|.||+|+|++|+.++
T Consensus 219 ~~~~~l~~~~~~~~~~---------~l~---~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l 286 (493)
T 1m6i_A 219 NMGKILPEYLSNWTME---------KVR---REGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVEL 286 (493)
T ss_dssp TTTTTSCHHHHHHHHH---------HHH---TTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTT
T ss_pred cccccCCHHHHHHHHH---------HHH---hcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHH
Confidence 221 11111111111 111 226777654 788853 2 377889999999999999999999887
Q ss_pred CCCCCCeeecC-CcccccccceeecCCCCcEEEcccccc----------chhHHHHHHHHHHHHHHcCCC
Q psy12350 976 LHESCGIKVVN-KNVQPLYKHTINIEHPTMFILGVPRHT----------LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 976 l~~~~g~~~~~-~~~~~ly~~~~~~~~p~l~~iG~~~~~----------~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
+.. .|+++++ ++...+..++. + .||||++|++... ..++.+..||+.+|+.+.|..
T Consensus 287 ~~~-~gl~~~~~~ggi~Vd~~l~-t-~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g~~ 353 (493)
T 1m6i_A 287 AKT-GGLEIDSDFGGFRVNAELQ-A-RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAA 353 (493)
T ss_dssp HHH-HTCCBCTTTCSEECCTTCE-E-ETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred HHH-cCCccccCCCcEEECCCcc-c-CCCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhcCCC
Confidence 653 5666664 12222333322 2 4999999998642 135689999999999998753
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-16 Score=198.15 Aligned_cols=259 Identities=16% Similarity=0.222 Sum_probs=161.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC-CCCCCCCCCCccccccCccccccccccccccCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE-HIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYG 818 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~-~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~ 818 (1129)
.+++|||+|++|+.+|..|.+.| ++|+|||+++.+||+|.... .++.. . +..+.......+..+ +..
T Consensus 374 ~~vvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~gg~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~-gv~ 441 (671)
T 1ps9_A 374 KNLAVVGAGPAGLAFAINAAARG--HQVTLFDAHSEIGGQFNIAKQIPGKE--------E-FYETLRYYRRMIEVT-GVT 441 (671)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSCTTHHHHTTSTTCT--------T-HHHHHHHHHHHHHHH-TCE
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCCeeeccccCCCHH--------H-HHHHHHHHHHHHHHc-CCE
Confidence 36789999999999999999999 99999999999999987432 12210 0 000000000000000 000
Q ss_pred C--CCC-CCCCC-CChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCE
Q psy12350 819 H--KGN-ADKSY-IGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQ 894 (1129)
Q Consensus 819 ~--~~~-~~~~~-~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~ 894 (1129)
+ ... ..... .....++.+|+.|+.|++||.+. ..++++.++.+.....+|+|+|||+|.+|+|+|..|++.|.+
T Consensus 442 ~~~~~~v~~~~~~~~d~lviAtG~~p~~~~i~G~~~--~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~ 519 (671)
T 1ps9_A 442 LKLNHTVTADQLQAFDETILASGIVPRTPPIDGIDH--PKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGES 519 (671)
T ss_dssp EEESCCCCSSSSCCSSEEEECCCEEECCCCCBTTTS--TTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred EEeCcEecHHHhhcCCEEEEccCCCcCCCCCCCCCC--CcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCC
Confidence 0 000 01112 33455666999999999999875 457787776655556799999999999999999999999877
Q ss_pred EEEEec---CCCCcc-----------chhhhhccccEEEEecCCccccc------------c-CCCCCeEEcCC--eeEE
Q psy12350 895 AVVVGS---GQSGLD-----------ITLDIATRASTVFLSHHSERVTS------------L-CLPNNVVLKPD--VAEL 945 (1129)
Q Consensus 895 V~vv~~---~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~V~~~~~--i~~v 945 (1129)
|+++.. ..++.+ ..+.......++.+-.+....+. . ....+|+++.+ ++++
T Consensus 520 vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i 599 (671)
T 1ps9_A 520 TSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKI 599 (671)
T ss_dssp GGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEE
T ss_pred cccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEE
Confidence 764200 000000 00000001122222111100010 0 01237888766 8899
Q ss_pred eCCcEEe-cCC--cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc--hhHHHH
Q psy12350 946 TPTGVRF-QDG--SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL--LFNLFD 1020 (1129)
Q Consensus 946 ~~~~V~~-~dG--~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~--~~~~~e 1020 (1129)
+++++++ .+| +++++|.||+|||++|+..++.. ++ ...+++|++|++.... ....+.
T Consensus 600 ~~~~v~~~~~G~~~~i~~D~Vi~a~G~~p~~~l~~~-----l~-------------~~g~~v~aiGD~~~~~~~~~~~A~ 661 (671)
T 1ps9_A 600 DDDGLHVVINGETQVLAVDNVVICAGQEPNRALAQP-----LI-------------DSGKTVHLIGGCDVAMELDARRAI 661 (671)
T ss_dssp ETTEEEEEETTEEEEECCSEEEECCCEEECCTTHHH-----HH-------------TTTCCEEECGGGTCCSSCCHHHHH
T ss_pred eCCeEEEecCCeEEEEeCCEEEECCCccccHHHHHH-----HH-------------hcCCCEEEECCcCccCchhHHHHH
Confidence 8888877 688 56899999999999998765542 11 0236899999987654 367889
Q ss_pred HHHHHHHHHH
Q psy12350 1021 LQVRLFQQLM 1030 (1129)
Q Consensus 1021 ~qa~~~a~~l 1030 (1129)
.||..+|+.|
T Consensus 662 ~~g~~aA~~i 671 (671)
T 1ps9_A 662 AQGTRLALEI 671 (671)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998763
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-17 Score=196.40 Aligned_cols=191 Identities=13% Similarity=0.100 Sum_probs=128.8
Q ss_pred hhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCC----------------------CCCCCCeEEEEcCCccHHHHHHHH
Q psy12350 831 KDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTP----------------------EPFAGKQAVVVGSGQSGLDITLDI 888 (1129)
Q Consensus 831 ~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~----------------------~~~~gk~VvVVG~G~Sg~eiA~~l 888 (1129)
.-|+++|+.|+.|.+||++++ .+..+...+. +.-..++++|||||++|+|+|.+|
T Consensus 160 ~LViAtGs~~~~~~ipG~~e~---a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l 236 (502)
T 4g6h_A 160 YLISAVGAEPNTFGIPGVTDY---GHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGEL 236 (502)
T ss_dssp EEEECCCCEECCTTCTTHHHH---CEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHH
T ss_pred EEEEcCCcccccCCccCcccc---cCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHH
Confidence 345559999999999998652 1111111100 001135899999999999999999
Q ss_pred HhcC--------------CEEEEEecCCCCccch-hhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCcEE
Q psy12350 889 ATTG--------------KQAVVVGSGQSGLDIT-LDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTGVR 951 (1129)
Q Consensus 889 a~~~--------------~~V~vv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~V~ 951 (1129)
++.+ .+|++++..+..++.. +.+...+.+.+.. .+|+++.+ |++++++++.
T Consensus 237 ~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~~~~~L~~------------~GV~v~~~~~v~~v~~~~~~ 304 (502)
T 4g6h_A 237 QDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLEN------------TSIKVHLRTAVAKVEEKQLL 304 (502)
T ss_dssp HHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHHHHHHHHH------------TTCEEETTEEEEEECSSEEE
T ss_pred HHHHHHHHHhhcccccccceeEEeccccccccCCCHHHHHHHHHHHHh------------cceeeecCceEEEEeCCceE
Confidence 8643 5899999988776543 3333333322211 26777766 8999988865
Q ss_pred e----cCCc----EeeccEEEEccCccCcCCCCC---CCCCeeecCCcccccccceeecCCCCcEEEcccccc---chhH
Q psy12350 952 F----QDGS----YEQVDIILCCTGYSNHYPFLH---ESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT---LLFN 1017 (1129)
Q Consensus 952 ~----~dG~----~~~~D~VI~aTG~~~~~~fl~---~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~---~~~~ 1017 (1129)
+ .||+ ++++|.||||+|.+++ |++. ..++...++++...+...+..+++||||++||+... ...+
T Consensus 305 ~~~~~~dg~~~~~~i~ad~viwa~Gv~~~-~~~~~l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~~a~ 383 (502)
T 4g6h_A 305 AKTKHEDGKITEETIPYGTLIWATGNKAR-PVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQ 383 (502)
T ss_dssp EEEECTTSCEEEEEEECSEEEECCCEECC-HHHHHHHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSCCCHH
T ss_pred EEEEecCcccceeeeccCEEEEccCCcCC-HHHHhHHHhccccccCCCceeECCccccCCCCCEEEEEcccCCCCCCchH
Confidence 4 4664 5899999999999997 3222 223334444443445555666789999999998653 3568
Q ss_pred HHHHHHHHHHHHHcCCCCCC
Q psy12350 1018 LFDLQVRLFQQLMQGHITLP 1037 (1129)
Q Consensus 1018 ~~e~qa~~~a~~l~g~~~lp 1037 (1129)
.+..||+++|++|.+....+
T Consensus 384 ~A~qqg~~~A~ni~~~~~~~ 403 (502)
T 4g6h_A 384 VAHQEAEYLAKNFDKMAQIP 403 (502)
T ss_dssp HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 99999999999997654433
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-16 Score=186.80 Aligned_cols=190 Identities=15% Similarity=0.136 Sum_probs=111.0
Q ss_pred hccCCCCCCCCCCCCCCCC--cEEeeccCCCC-CCC-----CCCeEEEEcCCccHHHHHHHHHhc--CCEEEEEecCCCC
Q psy12350 835 ENYNHPIYPEFKGKDMCQI--PILHSRDYRTP-EPF-----AGKQAVVVGSGQSGLDITLDIATT--GKQAVVVGSGQSG 904 (1129)
Q Consensus 835 ~~~~~P~~P~i~G~~~f~g--~~~hs~~~~~~-~~~-----~gk~VvVVG~G~Sg~eiA~~la~~--~~~V~vv~~~~~~ 904 (1129)
.+|+.|++|+. ++.|.+ .++|+..+.+. ..+ .+|+|+|||+|.||+|+|.+|++. +.+|+++.+.+..
T Consensus 187 AtG~~p~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~ 264 (463)
T 3s5w_A 187 SPGGTPRIPQV--FRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL 264 (463)
T ss_dssp CCCCEECCCGG--GGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred CCCCCCCCcch--hhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence 38888888862 344556 79999888652 344 689999999999999999999999 9999999987765
Q ss_pred ccch----------hhhhcc-------ccEEEEecC----C----------------ccccccCCCCCeEEcCC--eeEE
Q psy12350 905 LDIT----------LDIATR-------ASTVFLSHH----S----------------ERVTSLCLPNNVVLKPD--VAEL 945 (1129)
Q Consensus 905 ~~~~----------~~~~~~-------~~~~~~~~~----~----------------~~~~~~~~~~~V~~~~~--i~~v 945 (1129)
++.. +.+... .+..++... + ...+. -..+|++..+ |+++
T Consensus 265 ~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~i~~~~~v~~v 342 (463)
T 3s5w_A 265 KPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVS--GIPRHAFRCMTTVERA 342 (463)
T ss_dssp CBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHH--CCCCSEEETTEEEEEE
T ss_pred cCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhc--CCCCeEEEeCCEEEEE
Confidence 4321 000000 000000000 0 00000 0136777765 7777
Q ss_pred eCC--c--EEec---CCcE--eeccEEEEccCccCc--CCCCCCCCCeeecCCccccccccee-ec-CCCCcEEEccccc
Q psy12350 946 TPT--G--VRFQ---DGSY--EQVDIILCCTGYSNH--YPFLHESCGIKVVNKNVQPLYKHTI-NI-EHPTMFILGVPRH 1012 (1129)
Q Consensus 946 ~~~--~--V~~~---dG~~--~~~D~VI~aTG~~~~--~~fl~~~~g~~~~~~~~~~ly~~~~-~~-~~p~l~~iG~~~~ 1012 (1129)
+.+ + |.+. +|+. +++|.||+|||++++ .++|.. +...+ +....+.+..+. .. ..|+||++|++..
T Consensus 343 ~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~-l~~~~-g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~ 420 (463)
T 3s5w_A 343 TATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEP-LAEYL-GDHEIGRDYRLQTDERCKVAIYAQGFSQA 420 (463)
T ss_dssp EEETTEEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGG-GGGGB-C--CCCTTSBCCBCTTBCSEEEESSCCHH
T ss_pred EecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHH-HHHHh-CCcccCcccccccCCCCCCeEEEcCCCcc
Confidence 543 2 6665 7775 899999999999999 567664 21111 111111111211 11 2578999999753
Q ss_pred c-----c-hhHHHHHHHHHHHHHH
Q psy12350 1013 T-----L-LFNLFDLQVRLFQQLM 1030 (1129)
Q Consensus 1013 ~-----~-~~~~~e~qa~~~a~~l 1030 (1129)
. + .-..+..+++.++.++
T Consensus 421 ~~g~~~~~l~~~a~r~~~i~~~~~ 444 (463)
T 3s5w_A 421 SHGLSDTLLSVLPVRAEEISGSLY 444 (463)
T ss_dssp HHCTTTTSSTTHHHHHHHHHHHHH
T ss_pred cCCcCccchhHHHHHHHHHHHHHH
Confidence 2 1 1234445555554444
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-16 Score=184.25 Aligned_cols=271 Identities=10% Similarity=0.059 Sum_probs=158.4
Q ss_pred cCccccccCCchhhHHHHHHh---hCCCcceEEEcccCCcCcccccCCC-CCCCCCCCCccccccCccccccc-------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTE---AGNGFTCTTFEQADNIGGTWLYTEH-IGCDQYGLPVHSSMYKSLKTNLP------- 808 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~---~g~~~~v~v~E~~~~~GG~w~~~~~-~g~~~~g~p~~~~~y~~~~~~~~------- 808 (1129)
.+++|||+|++|+++|..|++ .| ++|+|+|+++.....-..... .+.. . .......+.....
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g--~~Vtlie~~~~~~~~~~~~~~~~g~~----~-~~~~~~~l~~~~~~~gv~~~ 77 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSG--HEVTLISANDYFQFVPSNPWVGVGWK----E-RDDIAFPIRHYVERKGIHFI 77 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGG--SEEEEECSSSEEECGGGHHHHHHTSS----C-HHHHEEECHHHHHTTTCEEE
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCc--CEEEEEeCCCCCcccCCccccccCcc----C-HHHHHHHHHHHHHHCCCEEE
Confidence 468999999999999999998 66 999999998854211000000 0000 0 0000000000000
Q ss_pred -ccccccc--CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCC--------CCCeEEEEcC
Q psy12350 809 -KDLMELC--GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPF--------AGKQAVVVGS 877 (1129)
Q Consensus 809 -~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~--------~gk~VvVVG~ 877 (1129)
....... .-.........+.....++.+|+.|+.|.+||++.+.+..++.+.+.+...+ .+++++|||+
T Consensus 78 ~~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGg 157 (437)
T 3sx6_A 78 AQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGA 157 (437)
T ss_dssp CSCEEEEETTTTEEEETTSCEEECSEEEECCCCEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred EeEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcCcccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEc
Confidence 0000000 0000000011122233444599999999999998765555554444332111 2567889999
Q ss_pred CccH------HHHHHHHH----hcCCE-----EEEEecCCCCccch----hhhhccccEEEEecCCccccccCCCCCeEE
Q psy12350 878 GQSG------LDITLDIA----TTGKQ-----AVVVGSGQSGLDIT----LDIATRASTVFLSHHSERVTSLCLPNNVVL 938 (1129)
Q Consensus 878 G~Sg------~eiA~~la----~~~~~-----V~vv~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 938 (1129)
|.+| +|+|.+++ +.+.+ |+++++.+....+. +.......+ .+. ..+|++
T Consensus 158 G~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~---------~l~---~~gI~~ 225 (437)
T 3sx6_A 158 MAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTK---------GLK---EEGIEA 225 (437)
T ss_dssp CTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHH---------HHH---HTTCEE
T ss_pred CCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHH---------HHH---HCCCEE
Confidence 7664 88885554 45553 99998876542211 111111111 111 126777
Q ss_pred cCC--eeEEeCCcEEecC---------CcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEE
Q psy12350 939 KPD--VAELTPTGVRFQD---------GSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFIL 1007 (1129)
Q Consensus 939 ~~~--i~~v~~~~V~~~d---------G~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~i 1007 (1129)
+.+ |++++++++.+.+ |+++++|.|++|+|+.++.+ +.+..++ .++++...+..++..+++||||++
T Consensus 226 ~~~~~v~~v~~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~-~~~~~gl-~~~~G~i~Vd~~l~t~~~~~Ifa~ 303 (437)
T 3sx6_A 226 YTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPA-VAGVEGL-CNPGGFVLVDEHQRSKKYANIFAA 303 (437)
T ss_dssp ECSEEEEEEETTEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHH-HHTSTTT-BCTTSCBCBCTTSBBSSCTTEEEC
T ss_pred EcCCEEEEEECCeEEEEecccCCccccceEEEEeEEEEcCCCcCchh-hhccccc-cCCCCcEEeChhccCCCCCCEEEE
Confidence 765 8999988887765 66789999999999998733 3333455 344444456666556689999999
Q ss_pred ccccccc-------------hhHHHHHHHHHHHHHHc
Q psy12350 1008 GVPRHTL-------------LFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1008 G~~~~~~-------------~~~~~e~qa~~~a~~l~ 1031 (1129)
|++.... ....+..||+.+|+++.
T Consensus 304 GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~ 340 (437)
T 3sx6_A 304 GIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIK 340 (437)
T ss_dssp GGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred EEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 9986531 35788999999888775
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.1e-15 Score=188.29 Aligned_cols=267 Identities=15% Similarity=0.137 Sum_probs=153.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCc-ceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccc-cCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGF-TCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMEL-CGY 817 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~-~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~-~~~ 817 (1129)
.+++|||+|++|+++|..|.+.| + +|+|||+++.+||++.+.. |. ++.+.. ..........+.-..+ .+.
T Consensus 188 ~~VvVIGgGpAGl~aA~~L~~~G--~~~Vtv~E~~~~~GG~~~~~i-p~---~~~~~~--~~~~~~~~~~~~gv~~~~~~ 259 (1025)
T 1gte_A 188 AKIALLGAGPASISCASFLARLG--YSDITIFEKQEYVGGLSTSEI-PQ---FRLPYD--VVNFEIELMKDLGVKIICGK 259 (1025)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSSSCSTHHHHTS-CT---TTSCHH--HHHHHHHHHHTTTCEEEESC
T ss_pred CEEEEECccHHHHHHHHHHHhcC--CCcEEEEeCCCCCCccccccC-Cc---ccCCHH--HHHHHHHHHHHCCcEEEccc
Confidence 46899999999999999999999 7 7999999999999986431 11 111100 0000000000000000 000
Q ss_pred CCCCCCC-----CCCCChhhhhhccC-CCCCCCC-CCCCCCCCcEEeeccCCC---------------CCCCCCCeEEEE
Q psy12350 818 GHKGNAD-----KSYIGAKDVLENYN-HPIYPEF-KGKDMCQIPILHSRDYRT---------------PEPFAGKQAVVV 875 (1129)
Q Consensus 818 ~~~~~~~-----~~~~~~~~v~~~~~-~P~~P~i-~G~~~f~g~~~hs~~~~~---------------~~~~~gk~VvVV 875 (1129)
....... ..+.....++.+|+ .|+.+++ +|++... .++++.+|.. .....+++|+||
T Consensus 260 ~v~~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~-gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVI 338 (1025)
T 1gte_A 260 SLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQ-GFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVL 338 (1025)
T ss_dssp CBSTTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTT-TEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEE
T ss_pred EeccceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCC-CEEEhHHHHHHHHhhcccccccccccccccCCcEEEE
Confidence 0000000 00111223334888 5887765 5765433 3555444311 112246799999
Q ss_pred cCCccHHHHHHHHHhcCC-EEEEEecCCC-CccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC--Cc
Q psy12350 876 GSGQSGLDITLDIATTGK-QAVVVGSGQS-GLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP--TG 949 (1129)
Q Consensus 876 G~G~Sg~eiA~~la~~~~-~V~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~~ 949 (1129)
|||.+|+|+|..+++.|. +||++.+... .++..+.....++ ..+|+++.. +.++.. +.
T Consensus 339 GgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~e~~~~~----------------~~Gv~~~~~~~~~~i~~~~g~ 402 (1025)
T 1gte_A 339 GAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAK----------------EEKCEFLPFLSPRKVIVKGGR 402 (1025)
T ss_dssp CSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHHHHHH----------------HTTCEEECSEEEEEEEEETTE
T ss_pred CCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHHHHHHHH----------------HcCCEEEeCCCceEEEccCCe
Confidence 999999999999999985 9999988652 2221111000000 013333322 333321 11
Q ss_pred ---EEec-------------CC--cEeeccEEEEccCccCc-CCCCCCCCCeeecCCcccccccceeecCCCCcEEEccc
Q psy12350 950 ---VRFQ-------------DG--SYEQVDIILCCTGYSNH-YPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVP 1010 (1129)
Q Consensus 950 ---V~~~-------------dG--~~~~~D~VI~aTG~~~~-~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~ 1010 (1129)
|++. +| .++++|.||+|+|++++ ..++.+..|+++++++...+....+.++.|+||++|++
T Consensus 403 v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~ 482 (1025)
T 1gte_A 403 IVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDI 482 (1025)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGG
T ss_pred EEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEEEeCCC
Confidence 2221 22 35799999999999874 33444334777776554444433345689999999998
Q ss_pred ccc-chhHHHHHHHHHHHHHHc
Q psy12350 1011 RHT-LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1011 ~~~-~~~~~~e~qa~~~a~~l~ 1031 (1129)
... .....+..||+.+|+.+.
T Consensus 483 ~~~~~~~~~A~~~G~~aA~~i~ 504 (1025)
T 1gte_A 483 VGMANTTVESVNDGKQASWYIH 504 (1025)
T ss_dssp GCSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHH
Confidence 764 456778889999888775
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.1e-16 Score=197.72 Aligned_cols=260 Identities=14% Similarity=0.115 Sum_probs=163.1
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccC----------ccccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYK----------SLKTNLP 808 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~----------~~~~~~~ 808 (1129)
..+++|||+|++|+++|..|.+.| ++|+|||+++.+||+|.+ . +...-.+.+.. .... .......
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G--~~V~lie~~~~~GG~~~~-~-~k~~i~~~~~~-~~~~~~~~~l~~~~~v~~~~~ 202 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSG--ARVMLLDERAEAGGTLLD-T-AGEQIDGMDSS-AWIEQVTSELAEAEETTHLQR 202 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSSGGGGG-S-SCCEETTEEHH-HHHHHHHHHHHHSTTEEEESS
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCCCCCCceecc-C-CccccCCCCHH-HHHHHHHHHHhhcCCcEEEeC
Confidence 347899999999999999999999 999999999999999983 1 10000000000 0000 0000000
Q ss_pred cccccc------------c-CCCCCC------CCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccC---CC-CC
Q psy12350 809 KDLMEL------------C-GYGHKG------NADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDY---RT-PE 865 (1129)
Q Consensus 809 ~~~~~~------------~-~~~~~~------~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~---~~-~~ 865 (1129)
...... . .+.... .....+.....|+.+|+.|+.|++||.+. . .++++..+ .+ ..
T Consensus 203 ~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ipG~~~-~-gv~~~~~~~~~l~~~~ 280 (965)
T 2gag_A 203 TTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFENNDR-P-GIMLAGAVRSYLNRYG 280 (965)
T ss_dssp EEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCBTCCS-T-TEEEHHHHHHHHHTTC
T ss_pred CEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCCCCCCCC-C-CEEEhHHHHHHHHhcC
Confidence 000000 0 000000 00001111233444999999999999864 3 36665332 11 23
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--ee
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VA 943 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~ 943 (1129)
...+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..... . ..+. ..+|+++.+ +.
T Consensus 281 ~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~~-------------~----~~l~---~~GV~v~~~~~v~ 340 (965)
T 2gag_A 281 VRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISAA-------------A----AQAV---ADGVQVISGSVVV 340 (965)
T ss_dssp EESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCHH-------------H----HHHH---HTTCCEEETEEEE
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccchh-------------H----HHHH---hCCeEEEeCCEeE
Confidence 346899999999999999999999999999999887654321 0 0111 125555544 77
Q ss_pred EEeC--C----cEEecC-------C--cEeeccEEEEccCccCcCCCCCC-CCCeeecCCccccccccee--ecCCCCcE
Q psy12350 944 ELTP--T----GVRFQD-------G--SYEQVDIILCCTGYSNHYPFLHE-SCGIKVVNKNVQPLYKHTI--NIEHPTMF 1005 (1129)
Q Consensus 944 ~v~~--~----~V~~~d-------G--~~~~~D~VI~aTG~~~~~~fl~~-~~g~~~~~~~~~~ly~~~~--~~~~p~l~ 1005 (1129)
++.+ + +|++.+ | +++++|.||+|+|++|+..++.. ..++.+++.. +.+ .++.|+||
T Consensus 341 ~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~~g~i~vd~~~------~~~v~~ts~p~Iy 414 (965)
T 2gag_A 341 DTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQRQGKLDWDTTI------HAFVPADAVANQH 414 (965)
T ss_dssp EEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHTTCCEEEETTT------TEEEECSCCTTEE
T ss_pred EEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhCCCcEEEcCcc------cccccCCCCCCEE
Confidence 7764 2 467764 5 56899999999999999876643 1234444321 222 26899999
Q ss_pred EEccccccchhHHHHHHHHHHHHHHc
Q psy12350 1006 ILGVPRHTLLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1006 ~iG~~~~~~~~~~~e~qa~~~a~~l~ 1031 (1129)
++|++.....+..+..||+.+|..+.
T Consensus 415 AaGD~a~~~~l~~A~~~G~~aA~~i~ 440 (965)
T 2gag_A 415 LAGAMTGRLDTASALSTGAATGAAAA 440 (965)
T ss_dssp ECGGGGTCCSHHHHHHHHHHHHHHHH
T ss_pred EEEecCCchhHHHHHHHHHHHHHHHH
Confidence 99999876555688999999998875
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.4e-14 Score=166.15 Aligned_cols=243 Identities=17% Similarity=0.165 Sum_probs=146.7
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCc-cccccCccccccccccc-----
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPV-HSSMYKSLKTNLPKDLM----- 812 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~-~~~~y~~~~~~~~~~~~----- 812 (1129)
..+++|||+|++|+++|.+|.+. ++|+|||+++.+||.|....+..+ |++. ...++..+.........
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~---~~V~vie~~~~~GG~~~~~~~~~~---g~~~~~~~~~~~l~~~l~~~v~~~~~~ 181 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY---LTVALIEERGWLGGDMWLKGIKQE---GFNKDSRKVVEELVGKLNENTKIYLET 181 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT---CCEEEECTTSSSSCSGGGTCSEET---TTTEEHHHHHHHHHHTCCTTEEEETTE
T ss_pred cCCEEEECccHHHHHHHHHHHhc---CCEEEEeCCCCCCCeeeccccccC---CCCCCHHHHHHHHHHHHhcCCEEEcCC
Confidence 35789999999999999999876 899999999999999875432111 1110 00000000000000000
Q ss_pred cccCCCCCCC--------CC--CCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCC----CCCCCCCeEEEEcCC
Q psy12350 813 ELCGYGHKGN--------AD--KSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRT----PEPFAGKQAVVVGSG 878 (1129)
Q Consensus 813 ~~~~~~~~~~--------~~--~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~----~~~~~gk~VvVVG~G 878 (1129)
.......... .. ..+.....++.+|+.|+.|++||.+. .| ++++.++.. .....+|+|+|||+|
T Consensus 182 ~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~~g~~~-~g-v~~~~~~~~~~~~~~~~~~~~vvViGgG 259 (493)
T 1y56_A 182 SALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFENNDM-PG-VFRRDFALEVMNVWEVAPGRKVAVTGSK 259 (493)
T ss_dssp EECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCCTTTTS-TT-EEEHHHHHHHHHTSCBCSCSEEEEESTT
T ss_pred EEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCCCCCCC-CC-EEEcHHHHHHHHhcccCCCCEEEEECCC
Confidence 0000000000 00 01111223344899999999999863 33 555443321 123457999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCCeeEEeCC----cEEecC
Q psy12350 879 QSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPT----GVRFQD 954 (1129)
Q Consensus 879 ~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~i~~v~~~----~V~~~d 954 (1129)
.+|+| ..+.+.|.++. ....+.++.++ .|.+.|
T Consensus 260 ~~gle--~~l~~~GV~v~-----------------------------------------~~~~v~~i~~~~~v~~v~~~~ 296 (493)
T 1y56_A 260 ADEVI--QELERWGIDYV-----------------------------------------HIPNVKRVEGNEKVERVIDMN 296 (493)
T ss_dssp HHHHH--HHHHHHTCEEE-----------------------------------------ECSSEEEEECSSSCCEEEETT
T ss_pred HHHHH--HHHHhCCcEEE-----------------------------------------eCCeeEEEecCCceEEEEeCC
Confidence 99999 33433332211 11124444332 266788
Q ss_pred CcEeeccEEEEccCccCcCCCCCCCCCeee--cCCcccc-cccceeecCCCCcEEEccccccchhHHHHHHHHHHHHHHc
Q psy12350 955 GSYEQVDIILCCTGYSNHYPFLHESCGIKV--VNKNVQP-LYKHTINIEHPTMFILGVPRHTLLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 955 G~~~~~D~VI~aTG~~~~~~fl~~~~g~~~--~~~~~~~-ly~~~~~~~~p~l~~iG~~~~~~~~~~~e~qa~~~a~~l~ 1031 (1129)
|+++++|.||+|+|++|+..++.. +|+.+ +.++... +.... . +.|+||++|++........+..|++.+|..+.
T Consensus 297 g~~i~aD~Vv~a~G~~p~~~l~~~-~g~~~~~~~~g~i~~vd~~~-~-s~~~vya~GD~~~~~~~~~A~~~g~~aa~~i~ 373 (493)
T 1y56_A 297 NHEYKVDALIFADGRRPDINPITQ-AGGKLRFRRGYYSPVLDEYH-R-IKDGIYVAGSAVSIKPHYANYLEGKLVGAYIL 373 (493)
T ss_dssp CCEEECSEEEECCCEEECCHHHHH-TTCCEEEETTEEEECCCTTS-E-EETTEEECSTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEeCEEEECCCcCcCchHHHh-cCCCccccCCceeecccccc-C-cCCCEEEEeccCCccCHHHHHHHHHHHHHHHH
Confidence 999999999999999999776654 45443 3433322 22222 2 78999999999877677889999999999887
Q ss_pred CCCC
Q psy12350 1032 GHIT 1035 (1129)
Q Consensus 1032 g~~~ 1035 (1129)
+..-
T Consensus 374 ~~lg 377 (493)
T 1y56_A 374 KEFG 377 (493)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 6543
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.5e-13 Score=155.06 Aligned_cols=274 Identities=13% Similarity=0.084 Sum_probs=146.3
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCC-CCCCCCCCCccccccCcccccccc----cccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEH-IGCDQYGLPVHSSMYKSLKTNLPK----DLMELC 815 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~-~g~~~~g~p~~~~~y~~~~~~~~~----~~~~~~ 815 (1129)
.++|||+|++|+++|.+|++.+++.+|+|+|+++........... .|... ...-...++.+....-+ ....+.
T Consensus 4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~--~~~~~~~~~~~~~~gv~~i~~~v~~id 81 (401)
T 3vrd_B 4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRE--LASLRVGYDGLRAHGIQVVHDSALGID 81 (401)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSC--GGGGEECSHHHHHTTCEEECSCEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCC--HHHHhhCHHHHHHCCCEEEEeEEEEEE
Confidence 478999999999999999999877899999998753211100000 00000 00000000000000000 000000
Q ss_pred --CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCC-cEEeeccCCC--------CCCCCCCeEEEEcCCc-----
Q psy12350 816 --GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQI-PILHSRDYRT--------PEPFAGKQAVVVGSGQ----- 879 (1129)
Q Consensus 816 --~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g-~~~hs~~~~~--------~~~~~gk~VvVVG~G~----- 879 (1129)
...........+....-++.+|+.++.|.+||+++..+ ...|+....+ ...+...+.+|+++|.
T Consensus 82 ~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~ 161 (401)
T 3vrd_B 82 PDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRC 161 (401)
T ss_dssp TTTTEEEETTSCEEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBC
T ss_pred ccCcEEEecccceeecceeeeccCCccccCCccCchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEe
Confidence 00000000111222233444999999999999876332 1222221111 0112233444444433
Q ss_pred --cHHHHHHHH----Hhc--CCEEEEEecCCCCccc---hhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEe
Q psy12350 880 --SGLDITLDI----ATT--GKQAVVVGSGQSGLDI---TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELT 946 (1129)
Q Consensus 880 --Sg~eiA~~l----a~~--~~~V~vv~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~ 946 (1129)
.+.|++.++ .+. ..+|+++...+..... .+.+.....+ . ....+|+++.+ +..++
T Consensus 162 ~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~---------~---l~~~gi~v~~~~~v~~v~ 229 (401)
T 3vrd_B 162 PPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGF---------G---TENALIEWHPGPDAAVVK 229 (401)
T ss_dssp TTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCT---------T---STTCSEEEECTTTTCEEE
T ss_pred ehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHH---------H---HHhcCcEEEeCceEEEEE
Confidence 334444444 333 4689998876543221 1111111110 0 01225666654 55554
Q ss_pred C----CcEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccce-eecCCCCcEEEcccccc----chhH
Q psy12350 947 P----TGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHT-INIEHPTMFILGVPRHT----LLFN 1017 (1129)
Q Consensus 947 ~----~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~-~~~~~p~l~~iG~~~~~----~~~~ 1017 (1129)
. ..++++||+++++|.|++|+|.+++ +++.. .++. ++++...+..++ .++++||||++||+... ....
T Consensus 230 ~~~~~~~v~~~~g~~i~~D~vi~~~g~~~~-~~~~~-~gl~-~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk~a~ 306 (401)
T 3vrd_B 230 TDTEAMTVETSFGETFKAAVINLIPPQRAG-KIAQS-ASLT-NDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPKSAY 306 (401)
T ss_dssp EETTTTEEEETTSCEEECSEEEECCCEEEC-HHHHH-TTCC-CTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCBSHH
T ss_pred ecccceEEEcCCCcEEEeeEEEEecCcCCc-hhHhh-cccc-ccCCCEEECCCcceecCCCCEEEecccccCCCCCchHH
Confidence 2 2488999999999999999999986 45543 5554 344444666664 46899999999998643 2457
Q ss_pred HHHHHHHHHHHHHc
Q psy12350 1018 LFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1018 ~~e~qa~~~a~~l~ 1031 (1129)
.+..||+.+|++|.
T Consensus 307 ~A~~qa~v~A~ni~ 320 (401)
T 3vrd_B 307 SANSQAKVAAAAVV 320 (401)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88999999988764
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.6e-13 Score=156.71 Aligned_cols=273 Identities=12% Similarity=0.098 Sum_probs=142.6
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCC-CCCCCCCCCccccccCcccccccccccccc-CC-
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEH-IGCDQYGLPVHSSMYKSLKTNLPKDLMELC-GY- 817 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~-~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~-~~- 817 (1129)
.++|||+|++|+.+|.+|++.+++++|+|+|+++...-+...... .|. .+... +...+.....+.-.+|- +.
T Consensus 4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~----~~~~~-i~~~~~~~~~~~gv~~i~~~v 78 (430)
T 3hyw_A 4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGW----RKFED-ISVPLAPLLPKFNIEFINEKA 78 (430)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTC----SCGGG-SEEESTTTGGGGTEEEECSCE
T ss_pred cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCC----CCHHH-hhhcHHHHHHHCCcEEEEeEE
Confidence 478999999999999999998888999999998753210000000 000 00000 00000000000000000 00
Q ss_pred -CCCCC-------CCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCC-------CC-CCCCeEEEEcCCc--
Q psy12350 818 -GHKGN-------ADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTP-------EP-FAGKQAVVVGSGQ-- 879 (1129)
Q Consensus 818 -~~~~~-------~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~-------~~-~~gk~VvVVG~G~-- 879 (1129)
.+..+ ....+....-|+++|+.+. +++||+++.. ...+...+. .+ ..++.++|+|++.
T Consensus 79 ~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~-~~i~G~~e~~---~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gv 154 (430)
T 3hyw_A 79 ESIDPDANTVTTQSGKKIEYDYLVIATGPKLV-FGAEGQEENS---TSICTAEHALETQKKLQELYANPGPVVIGAIPGV 154 (430)
T ss_dssp EEEETTTTEEEETTCCEEECSEEEECCCCEEE-CCSBTHHHHS---CCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTC
T ss_pred EEEECCCCEEEECCCCEEECCEEEEeCCCCcc-CCccCcccCc---CCcccHHHHHHHHHHHHhhccCCceEEEeCCCcE
Confidence 00000 0111122233444888764 5688876421 111111110 01 1345566776653
Q ss_pred ----cHHHHHHHHH----hcC----CEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEE
Q psy12350 880 ----SGLDITLDIA----TTG----KQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAEL 945 (1129)
Q Consensus 880 ----Sg~eiA~~la----~~~----~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v 945 (1129)
.+.|+|..++ +.+ .+|++++..+....+.+......++.+. +.+. ..+|+++.+ |+++
T Consensus 155 e~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~-----~~l~---~~GV~~~~~~~v~~v 226 (430)
T 3hyw_A 155 SCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVE-----DLFA---ERNIDWIANVAVKAI 226 (430)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHH-----HHHH---HTTCEEECSCEEEEE
T ss_pred EEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHH-----HHHH---hCCeEEEeCceEEEE
Confidence 2234544443 233 4677777655443332211111111000 0010 126777765 9999
Q ss_pred eCCcEEecC--C--cEeeccEEEEccCccCcCCCCCCC-CCeeecCCcccccccceeecCCCCcEEEcccccc-------
Q psy12350 946 TPTGVRFQD--G--SYEQVDIILCCTGYSNHYPFLHES-CGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT------- 1013 (1129)
Q Consensus 946 ~~~~V~~~d--G--~~~~~D~VI~aTG~~~~~~fl~~~-~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~------- 1013 (1129)
+++++.+.+ | +++++|.||+|+|.+++ +++... ..+..+.++...+...+.++++||||++||+...
T Consensus 227 ~~~~~~~~~~~g~~~~i~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~ 305 (430)
T 3hyw_A 227 EPDKVIYEDLNGNTHEVPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTP 305 (430)
T ss_dssp CSSEEEEECTTSCEEEEECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCS
T ss_pred eCCceEEEeeCCCceEeecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCcccCc
Confidence 998887764 3 46899999999999997 444331 2233344444445555556899999999998642
Q ss_pred ------chhHHHHHHHHHHHHHHc
Q psy12350 1014 ------LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1014 ------~~~~~~e~qa~~~a~~l~ 1031 (1129)
..-+.+..||+.+|++|.
T Consensus 306 ~~~~~pk~a~~A~~qg~~~A~Ni~ 329 (430)
T 3hyw_A 306 IPTGVPKTGMMIEQMAMAVAHNIV 329 (430)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred CcCccchHHHHHHHHHHHHHHHHH
Confidence 123689999999998875
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-10 Score=118.63 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=96.6
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhcccc--EEEEecCCccccccCC-CCCeEEcC-CeeEEe
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRAS--TVFLSHHSERVTSLCL-PNNVVLKP-DVAELT 946 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~V~~~~-~i~~v~ 946 (1129)
+|+|||+|.+|+++|..|++.+.+|+++++.+..+.....+..... .......+...+...+ ..+|++.. .+.+++
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~~v~~i~ 82 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPGVVKGVR 82 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEECCCCEEE
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeCEEEEEE
Confidence 6999999999999999999999999999987633211000000000 0000000000000000 11455544 466775
Q ss_pred C--Cc--EEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc--hhHHHH
Q psy12350 947 P--TG--VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL--LFNLFD 1020 (1129)
Q Consensus 947 ~--~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~--~~~~~e 1020 (1129)
. ++ |.+++| ++++|.||+|||..++. .+.+|++++ ++...+.. .+.++.|+||++|++.... ....+.
T Consensus 83 ~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~---~~~~g~~~~-~g~i~vd~-~~~t~~~~i~a~GD~~~~~~~~~~~A~ 156 (180)
T 2ywl_A 83 DMGGVFEVETEEG-VEKAERLLLCTHKDPTL---PSLLGLTRR-GAYIDTDE-GGRTSYPRVYAAGVARGKVPGHAIISA 156 (180)
T ss_dssp ECSSSEEEECSSC-EEEEEEEEECCTTCCHH---HHHHTCCEE-TTEECCCT-TCBCSSTTEEECGGGGTCCSCCHHHHH
T ss_pred EcCCEEEEEECCC-EEEECEEEECCCCCCCc---cccCCCCcc-CceEEeCC-CCCcCCCCEEEeecccCcchhhHHHHH
Confidence 4 22 677788 89999999999999853 222455665 44322322 2345899999999987653 567888
Q ss_pred HHHHHHHHHHcC
Q psy12350 1021 LQVRLFQQLMQG 1032 (1129)
Q Consensus 1021 ~qa~~~a~~l~g 1032 (1129)
.|++.+|..+.+
T Consensus 157 ~~g~~aa~~i~~ 168 (180)
T 2ywl_A 157 GDGAYVAVHLVS 168 (180)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhHHHHHHHHHH
Confidence 999999988754
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=6.3e-10 Score=128.16 Aligned_cols=151 Identities=15% Similarity=0.222 Sum_probs=83.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCC--CCCCCccCcccc--------cccccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRD--QYGLPVHSSMYK--------SLKTNLP 78 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~--~~~~~~~~~~y~--------~l~~~~~ 78 (1129)
.+||+|||||+||++||..|++ .|.+|+|+||++.+|+.|..+....|. ..++. ....+. .+....+
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~--~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~-~~~~~~~~~~~~~~~l~~~~~ 80 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAK--LGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVT-PAHYLSQNPHFVKSALARYTN 80 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCC-GGGEECSCTTSTHHHHHHSCH
T ss_pred CCCEEEECCcHHHHHHHHHHHh--CCCCEEEEeCCCCCchhcEEcCCCeEEccCCccC-HHHhccCCHHHHHHHHHhCCH
Confidence 4799999999999999999999 568999999998886544321100010 00000 000010 0000000
Q ss_pred cccccc---CCCCCCC-CCCCCCC--CHHHHHHHHHHHHHhcCCcceeEeceeeeeecccccc-CCCCceEEeccccCcc
Q psy12350 79 KEIMEL---SGYHHKG-HPDKSYI--AANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLIN-IEHPSMCIIGIPRDTV 151 (1129)
Q Consensus 79 ~~~~~~---~d~~~~~-~~~~~~~--~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~-~~~~~~~~~~~~~~~~ 151 (1129)
....++ .+.++.. .....|+ ...++.+++.+.+++.++ .++++++|+.+...... .+.| .+.+ .+
T Consensus 81 ~~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv--~i~~~~~v~~i~~~~~g~~~~~--~v~~--~~-- 152 (401)
T 2gqf_A 81 WDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGA--KILLRSEVSQVERIQNDEKVRF--VLQV--NS-- 152 (401)
T ss_dssp HHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTC--EEECSCCEEEEEECCSCSSCCE--EEEE--TT--
T ss_pred HHHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEcccCcCCCeE--EEEE--CC--
Confidence 000000 0111100 0011222 677888999998988887 89999999988752100 1223 3322 11
Q ss_pred ceEEecceeeeEEEEecccCCCCC
Q psy12350 152 GFYLFDLQVRFFLQLMQGHVTLPS 175 (1129)
Q Consensus 152 ~~~~~d~~~~~~lvvAtG~~~~p~ 175 (1129)
....+| +||+|||..+.|.
T Consensus 153 g~i~ad-----~VVlAtG~~s~p~ 171 (401)
T 2gqf_A 153 TQWQCK-----NLIVATGGLSMPG 171 (401)
T ss_dssp EEEEES-----EEEECCCCSSCGG
T ss_pred CEEECC-----EEEECCCCccCCC
Confidence 146677 9999999766543
|
| >3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-10 Score=130.14 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=39.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..||+|||||||||+||.+|++...|++|+||||++.+||.+.+
T Consensus 65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~ 108 (326)
T 3fpz_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL 108 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEe
Confidence 46999999999999999999764468999999999999998874
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.9e-08 Score=114.59 Aligned_cols=150 Identities=11% Similarity=0.123 Sum_probs=83.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCC--CCCCcc-------CcccccccccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQ--YGLPVH-------SSMYKSLKTNLP 78 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~--~~~~~~-------~~~y~~l~~~~~ 78 (1129)
..+||+|||||+||++||..|++ .|.+|+|+||++.+|+.+..+....|.- ..+... ...+..+....+
T Consensus 26 ~~~dViIIGgG~AGl~aA~~La~--~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~ 103 (417)
T 3v76_A 26 EKQDVVIIGAGAAGMMCAIEAGK--RGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRP 103 (417)
T ss_dssp --CCEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCH
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCH
Confidence 45799999999999999999999 5699999999998876442211100000 000000 000000000000
Q ss_pred cccccc---CCCCCCCC-CCCCC--CCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccc
Q psy12350 79 KEIMEL---SGYHHKGH-PDKSY--IAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVG 152 (1129)
Q Consensus 79 ~~~~~~---~d~~~~~~-~~~~~--~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (1129)
.....+ .+.++... ....| ....++.+.+.+.+++.++ .++++++|+.+.... +.| .+.+ .. .
T Consensus 104 ~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv--~i~~~~~V~~i~~~~---~~~--~V~~-~~--g- 172 (417)
T 3v76_A 104 QDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGV--QLRLETSIGEVERTA---SGF--RVTT-SA--G- 172 (417)
T ss_dssp HHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTC--EEECSCCEEEEEEET---TEE--EEEE-TT--E-
T ss_pred HHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCC--EEEECCEEEEEEEeC---CEE--EEEE-CC--c-
Confidence 000000 00111000 01111 2566888999998888877 899999999987532 223 3322 11 1
Q ss_pred eEEecceeeeEEEEecccCCCCC
Q psy12350 153 FYLFDLQVRFFLQLMQGHVTLPS 175 (1129)
Q Consensus 153 ~~~~d~~~~~~lvvAtG~~~~p~ 175 (1129)
...+| +||+|||.++.|.
T Consensus 173 ~i~ad-----~VIlAtG~~S~p~ 190 (417)
T 3v76_A 173 TVDAA-----SLVVASGGKSIPK 190 (417)
T ss_dssp EEEES-----EEEECCCCSSCGG
T ss_pred EEEee-----EEEECCCCccCCC
Confidence 56678 9999999776554
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.4e-07 Score=93.91 Aligned_cols=113 Identities=15% Similarity=0.126 Sum_probs=76.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
++|+|||||++|+.+|..|++ .+.+|+|+|+.+.+ +. . ...+..++.+|
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~--~g~~v~lie~~~~~---~~-------------------~------~~~~~~~~~~~- 50 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLAR--AGLKVLVLDGGRSK---VK-------------------G------VSRVPNYPGLL- 50 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSCCT---TT-------------------T------CSCCCCSTTCT-
T ss_pred CeEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCc---cc-------------------C------chhhhccCCCc-
Confidence 689999999999999999999 66899999997621 10 0 00111122221
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
......++.+++.+.+++.++ .++++ +|++++... +.+ .+.. .+ . ...+| .||+|+|
T Consensus 51 ------~~~~~~~~~~~l~~~~~~~gv--~v~~~-~v~~i~~~~---~~~--~v~~-~~--g-~i~ad-----~vI~A~G 107 (180)
T 2ywl_A 51 ------DEPSGEELLRRLEAHARRYGA--EVRPG-VVKGVRDMG---GVF--EVET-EE--G-VEKAE-----RLLLCTH 107 (180)
T ss_dssp ------TCCCHHHHHHHHHHHHHHTTC--EEEEC-CCCEEEECS---SSE--EEEC-SS--C-EEEEE-----EEEECCT
T ss_pred ------CCCCHHHHHHHHHHHHHHcCC--EEEeC-EEEEEEEcC---CEE--EEEE-CC--C-EEEEC-----EEEECCC
Confidence 123567899999999998887 78888 998887521 222 2322 12 1 56788 9999999
Q ss_pred cCCCCCccc
Q psy12350 170 HVTLPSKAE 178 (1129)
Q Consensus 170 ~~~~p~~p~ 178 (1129)
..|+++.
T Consensus 108 --~~~~~~~ 114 (180)
T 2ywl_A 108 --KDPTLPS 114 (180)
T ss_dssp --TCCHHHH
T ss_pred --CCCCccc
Confidence 5555433
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-07 Score=111.93 Aligned_cols=142 Identities=16% Similarity=0.067 Sum_probs=84.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||++||++|..|++ .|.+|+|+||++.+|+.......+ .....+. .+.-. .....|
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~--~G~~V~liEk~~~~g~~~~~~~~~-----------~~~~~l~-~~g~~-~~~~~~ 155 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELAL--LGARVVLVEKRIKFSRHNVLHLWP-----------FTIHDLR-ALGAK-KFYGRF 155 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCSSCCCCCEEECCH-----------HHHHHHH-TTTHH-HHCTTT
T ss_pred CCCCEEEECccHHHHHHHHHHHH--CCCeEEEEEeccccCCCCcccCCh-----------hHHHHHH-HcCCc-cccccc
Confidence 35799999999999999999999 669999999998877542210000 0000000 00000 000111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
... .-...+..++.++|.+.+++.++ .++++++|+++.......+.+.+.+.+..+++.....+| +||+|
T Consensus 156 ~~~---~~~~~~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad-----~VV~A 225 (497)
T 2bry_A 156 CTG---TLDHISIRQLQLLLLKVALLLGV--EIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFD-----VLISA 225 (497)
T ss_dssp TCT---TCCEEEHHHHHHHHHHHHHHTTC--EEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBS-----EEEEC
T ss_pred ccc---ccccCCHHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcC-----EEEEC
Confidence 100 01123567888999998888776 899999999987521112345554432101211345677 99999
Q ss_pred cccCCCC
Q psy12350 168 QGHVTLP 174 (1129)
Q Consensus 168 tG~~~~p 174 (1129)
+|..+.+
T Consensus 226 ~G~~S~~ 232 (497)
T 2bry_A 226 AGGKFVP 232 (497)
T ss_dssp CCTTCCC
T ss_pred CCCCccc
Confidence 9955433
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.1e-07 Score=107.39 Aligned_cols=148 Identities=15% Similarity=0.136 Sum_probs=80.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc------eEecCCCCCCCCCCCCcc----CcccccccccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG------TWVYTEQTGRDQYGLPVH----SSMYKSLKTNL 77 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG------~w~~~~~~~~~~~~~~~~----~~~y~~l~~~~ 77 (1129)
+++||+||||||||++||..|++ .|++|+||||++.+|. ..... ..+..+++.. .......+...
T Consensus 3 e~yDViIVGaGpaGl~~A~~La~--~G~~V~v~Er~~~~~~~~~~g~~l~~~---~l~~l~~~~~~~~~~~~~~~~~~~~ 77 (397)
T 3oz2_A 3 ETYDVLVVGGGPGGSTAARYAAK--YGLKTLMIEKRPEIGSPVRCGEGLSKG---ILNEADIKADRSFIANEVKGARIYG 77 (397)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSTTCSCCSCCEEETH---HHHHTTCCCCTTTEEEEESEEEEEC
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCCCceecccCHH---HHHHcCCCchhhhhhcccceEEEEe
Confidence 35899999999999999999999 6799999999877653 11100 0000111100 00111111111
Q ss_pred Cccc--cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEE
Q psy12350 78 PKEI--MELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL 155 (1129)
Q Consensus 78 ~~~~--~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1129)
+... ..+.. +...........+..+.+.|.+.+.+.|. .++++++|+.+... ++....+.....++.....
T Consensus 78 ~~~~~~~~~~~-~~~~~~~~~~i~R~~~~~~L~~~a~~~G~--~~~~~~~v~~~~~~----~~~~~~v~~~~~~~~~~~~ 150 (397)
T 3oz2_A 78 PSEKRPIILQS-EKAGNEVGYVLERDKFDKHLAALAAKAGA--DVWVKSPALGVIKE----NGKVAGAKIRHNNEIVDVR 150 (397)
T ss_dssp TTCSSCEEEEC-SSSSCCCEEEECHHHHHHHHHHHHHHHTC--EEESSCCEEEEEEE----TTEEEEEEEEETTEEEEEE
T ss_pred CCCceEeeccc-cccCCceeEEEEHHHHHHHHHHHHHhcCc--EEeeeeeeeeeeec----cceeeeeeecccccceEEE
Confidence 1110 00000 00000011124788889999988888876 78999999877642 1111112222223333455
Q ss_pred ecceeeeEEEEecccCC
Q psy12350 156 FDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~ 172 (1129)
.| .||.|.|..+
T Consensus 151 a~-----~vIgAdG~~S 162 (397)
T 3oz2_A 151 AK-----MVIAADGFES 162 (397)
T ss_dssp EE-----EEEECCCTTC
T ss_pred Ee-----EEEeCCcccc
Confidence 66 8999999443
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2.1e-07 Score=111.03 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=32.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC-CcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD-NVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~-~~G 47 (1129)
.+||+|||||+||++||..|++ .|.+|+|+|++. .+|
T Consensus 28 ~yDVIVIGgG~AGl~AAlaLAr--~G~kVlLIEk~~~~iG 65 (651)
T 3ces_A 28 PFDVIIIGGGHAGTEAAMAAAR--MGQQTLLLTHNIDTLG 65 (651)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTT
T ss_pred cCCEEEECChHHHHHHHHHHHh--CCCCEEEEeecccccc
Confidence 4799999999999999999999 669999999974 454
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=98.48 E-value=4.8e-07 Score=95.78 Aligned_cols=124 Identities=9% Similarity=-0.022 Sum_probs=75.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+|||||++|++||..|++ .+.+|+|+|++....|.+.+ +..+. . ....+++ ++.|
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~--~g~~v~lie~~~~~~G~~~~-~~~~~----~-~~~~~~~-----------~~~d-- 61 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQ--KGVRVGLLTQSLDAVMMPFL-PPKPP----F-PPGSLLE-----------RAYD-- 61 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCCSS-CCCSC----C-CTTCHHH-----------HHCC--
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEecCCCcCCcccC-ccccc----c-chhhHHh-----------hhcc--
Confidence 3799999999999999999999 66999999998443443321 11000 0 0000111 1100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhc-CCcceeEeceeeeeeccccccCCCCce-EEeccccCccceEEecceeeeEEEE
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNF-NLRNLCLVNKNVQPLYKHLINIEHPSM-CIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
..-+...++.+++.+.+++. ++ .++ +++|+++... ...+ .+.. .+ .....+| +||+
T Consensus 62 ------~~g~~~~~~~~~l~~~~~~~~gv--~i~-~~~v~~i~~~-----~~~v~~v~~-~~--g~~i~a~-----~VV~ 119 (232)
T 2cul_A 62 ------PKDERVWAFHARAKYLLEGLRPL--HLF-QATATGLLLE-----GNRVVGVRT-WE--GPPARGE-----KVVL 119 (232)
T ss_dssp ------TTCCCHHHHHHHHHHHHHTCTTE--EEE-ECCEEEEEEE-----TTEEEEEEE-TT--SCCEECS-----EEEE
T ss_pred ------CCCCCHHHHHHHHHHHHHcCCCc--EEE-EeEEEEEEEe-----CCEEEEEEE-CC--CCEEECC-----EEEE
Confidence 00115678888998888886 66 555 6788888652 1122 1221 22 2346678 9999
Q ss_pred ecccCCCCC
Q psy12350 167 MQGHVTLPS 175 (1129)
Q Consensus 167 AtG~~~~p~ 175 (1129)
|||.++...
T Consensus 120 A~G~~s~~~ 128 (232)
T 2cul_A 120 AVGSFLGAR 128 (232)
T ss_dssp CCTTCSSCE
T ss_pred CCCCChhhc
Confidence 999665443
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.5e-07 Score=109.23 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=81.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC----CcCceEecCCCCC-CCCCCC---------CccCcccccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD----NVGGTWVYTEQTG-RDQYGL---------PVHSSMYKSL 73 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~----~~GG~w~~~~~~~-~~~~~~---------~~~~~~y~~l 73 (1129)
..++|+|||||++|+++|..|++ .|++|+|+||.+ .+|+.+....... ....|+ +......-..
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~--~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 83 (512)
T 3e1t_A 6 EVFDLIVIGGGPGGSTLASFVAM--RGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRW 83 (512)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEEC
T ss_pred ccCCEEEECcCHHHHHHHHHHHh--CCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEe
Confidence 34799999999999999999999 679999999986 2332221100000 000111 0000000000
Q ss_pred cccCCccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCC-ceEEeccccCccc
Q psy12350 74 KTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHP-SMCIIGIPRDTVG 152 (1129)
Q Consensus 74 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~-~~~~~~~~~~~~~ 152 (1129)
..........+...+..........++..+.++|.+.+.+.|+ .++++++|+.+.... +.. .+.+.+ .+++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv--~i~~~~~V~~v~~~~---~~v~gv~~~~-~dG~~~ 157 (512)
T 3e1t_A 84 GKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGV--DVRERHEVIDVLFEG---ERAVGVRYRN-TEGVEL 157 (512)
T ss_dssp SSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTC--EEESSCEEEEEEEET---TEEEEEEEEC-SSSCEE
T ss_pred cCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEEC---CEEEEEEEEe-CCCCEE
Confidence 0000000011111110001111235788999999999988776 899999999987621 110 122221 122223
Q ss_pred eEEecceeeeEEEEecccCC
Q psy12350 153 FYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 153 ~~~~d~~~~~~lvvAtG~~~ 172 (1129)
...+| .||.|+|..+
T Consensus 158 ~i~ad-----~VI~AdG~~S 172 (512)
T 3e1t_A 158 MAHAR-----FIVDASGNRT 172 (512)
T ss_dssp EEEEE-----EEEECCCTTC
T ss_pred EEEcC-----EEEECCCcch
Confidence 56677 9999999544
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.4e-07 Score=105.79 Aligned_cols=147 Identities=18% Similarity=0.096 Sum_probs=82.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc----CceEecCCCCCC----CCCCCCc-----cCcccccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV----GGTWVYTEQTGR----DQYGLPV-----HSSMYKSLKT 75 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~----GG~w~~~~~~~~----~~~~~~~-----~~~~y~~l~~ 75 (1129)
.+||+|||||++|+++|..|++ .|++|+|+||++.. |.... +.+ ...|+.. ..........
T Consensus 5 ~~dVvIIGgG~aGl~~A~~La~--~G~~V~v~E~~~~~~~~~g~~~~----~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 78 (421)
T 3nix_A 5 KVDVLVIGAGPAGTVAASLVNK--SGFKVKIVEKQKFPRFVIGESLL----PRCMEHLDEAGFLDAVKAQGFQQKFGAKF 78 (421)
T ss_dssp EEEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCSSCCCSCCBCC----GGGHHHHHHTTCHHHHHHTTCEEECEEEE
T ss_pred cCcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCCCCcccCccc----HhHHHHHHHcCChHHHHHcCCcccCCcEE
Confidence 4799999999999999999999 66999999997632 22111 000 0001000 0000000000
Q ss_pred cCCccc--cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccce
Q psy12350 76 NLPKEI--MELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGF 153 (1129)
Q Consensus 76 ~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1129)
...... ..+.+.............+..+.+.|.+.+.+.|. .++++++|+.+.... +++.+.+.+ .+++...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv--~i~~~~~v~~i~~~~---~~~~v~v~~-~~g~~~~ 152 (421)
T 3nix_A 79 VRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGV--DVEYEVGVTDIKFFG---TDSVTTIED-INGNKRE 152 (421)
T ss_dssp EETTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTC--EEECSEEEEEEEEET---TEEEEEEEE-TTSCEEE
T ss_pred EeCCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEeC---CEEEEEEEc-CCCCEEE
Confidence 000111 11111000001111235788899999999988876 899999999987532 334444443 2232224
Q ss_pred EEecceeeeEEEEecccCC
Q psy12350 154 YLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 154 ~~~d~~~~~~lvvAtG~~~ 172 (1129)
..+| .||.|+|..+
T Consensus 153 ~~a~-----~vV~A~G~~s 166 (421)
T 3nix_A 153 IEAR-----FIIDASGYGR 166 (421)
T ss_dssp EEEE-----EEEECCGGGC
T ss_pred EEcC-----EEEECCCCch
Confidence 6677 9999999543
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-07 Score=106.63 Aligned_cols=43 Identities=16% Similarity=0.355 Sum_probs=37.5
Q ss_pred ceEEEEcCChHHHHHHHHhhc-CCCCceEEEEcccCCcCceEec
Q psy12350 10 LHIGVIGGGAGGLTATKRLTE-PGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~-~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
+||+|||||++|+++|..|++ .+.|++|+||||++.+||.|..
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~ 45 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTT 45 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCE
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceee
Confidence 589999999999999999998 2345899999999999997764
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-07 Score=99.12 Aligned_cols=163 Identities=13% Similarity=0.124 Sum_probs=92.4
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc--hhhhh-----ccccEEE-----EecCCccccccCC-C-CC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI--TLDIA-----TRASTVF-----LSHHSERVTSLCL-P-NN 935 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~--~~~~~-----~~~~~~~-----~~~~~~~~~~~~~-~-~~ 935 (1129)
.+|+|||+|.+|+++|..|++.|.+|+++++......+ .+... ....+.. ....+...+...+ . .+
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g 83 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP 83 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence 36999999999999999999999999999886211000 00000 0000000 0000001111111 1 25
Q ss_pred eEEcCC-eeEEeC--C---cEEecCCcEeeccEEEEccCccCcCCC-------------------CCC---CCCeeecCC
Q psy12350 936 VVLKPD-VAELTP--T---GVRFQDGSYEQVDIILCCTGYSNHYPF-------------------LHE---SCGIKVVNK 987 (1129)
Q Consensus 936 V~~~~~-i~~v~~--~---~V~~~dG~~~~~D~VI~aTG~~~~~~f-------------------l~~---~~g~~~~~~ 987 (1129)
+++... ++++.. + +|.+.+|+++++|.||+|||...+... |.+ +.|+++...
T Consensus 84 v~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~~~~ 163 (232)
T 2cul_A 84 LHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFVER 163 (232)
T ss_dssp EEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCEEEE
T ss_pred cEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeEEcc
Confidence 665533 776643 2 367789988999999999999544210 000 112211100
Q ss_pred c--------c------------cc-cccceeecCCCCcEEEccccccchhHHHHHHHHHHHHHHcC
Q psy12350 988 N--------V------------QP-LYKHTINIEHPTMFILGVPRHTLLFNLFDLQVRLFQQLMQG 1032 (1129)
Q Consensus 988 ~--------~------------~~-ly~~~~~~~~p~l~~iG~~~~~~~~~~~e~qa~~~a~~l~g 1032 (1129)
. . .+ ....+..+++|+||++|++.....+..+-.|++.+|..+..
T Consensus 164 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a~~g~~~~~~~~g~~~a~~i~~ 229 (232)
T 2cul_A 164 EGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCVREGDYARMSEEGKRLAEHLLH 229 (232)
T ss_dssp EEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGTSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecccCccHHHHHHHHHHHHHHHHh
Confidence 0 0 00 00011225899999999998335778889999999998753
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.41 E-value=5.5e-07 Score=106.79 Aligned_cols=36 Identities=36% Similarity=0.336 Sum_probs=33.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
.+||+||||||+||+||..|++ .|++|+||||++.+
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~--~G~kV~VlEr~~~~ 142 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQ--MGFNPIIVERGKEV 142 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHH--TTCCCEEECSSCCH
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCeEEEEEccCcc
Confidence 3799999999999999999999 67999999998776
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.9e-07 Score=109.56 Aligned_cols=149 Identities=16% Similarity=0.254 Sum_probs=81.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCC-CCc----------cCcccccccccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYG-LPV----------HSSMYKSLKTNL 77 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~-~~~----------~~~~y~~l~~~~ 77 (1129)
.+||+|||||+||++||..|++ .|.+|+|+||.+.+|+....+....|.-.. .+. ....+..+....
T Consensus 26 ~~dVvIIGgG~aGl~aA~~la~--~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (447)
T 2i0z_A 26 HYDVIVIGGGPSGLMAAIGAAE--EGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFN 103 (447)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSC
T ss_pred CCCEEEECCcHHHHHHHHHHHH--CCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcC
Confidence 4799999999999999999999 568999999998887543221100000000 000 000000000000
Q ss_pred Ccccccc---CCCCCCCCC-CCCCC---CHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCC-CceEEeccccC
Q psy12350 78 PKEIMEL---SGYHHKGHP-DKSYI---AANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEH-PSMCIIGIPRD 149 (1129)
Q Consensus 78 ~~~~~~~---~d~~~~~~~-~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~-~~~~~~~~~~~ 149 (1129)
+....++ .+.++.... ...|+ ....+.+.|.+.+++.++ .|+++++|+++.... +. +.+.. .++
T Consensus 104 ~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV--~i~~~~~V~~i~~~~---~~v~~V~~---~~G 175 (447)
T 2i0z_A 104 NEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGV--KIRTNTPVETIEYEN---GQTKAVIL---QTG 175 (447)
T ss_dssp HHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTC--EEECSCCEEEEEEET---TEEEEEEE---TTC
T ss_pred HHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCC--EEEeCcEEEEEEecC---CcEEEEEE---CCC
Confidence 0000000 011110000 01122 467888888888888776 899999999987521 11 22222 222
Q ss_pred ccceEEecceeeeEEEEecccCCCC
Q psy12350 150 TVGFYLFDLQVRFFLQLMQGHVTLP 174 (1129)
Q Consensus 150 ~~~~~~~d~~~~~~lvvAtG~~~~p 174 (1129)
.....| .||+|||.++.|
T Consensus 176 --~~i~Ad-----~VVlAtGg~s~~ 193 (447)
T 2i0z_A 176 --EVLETN-----HVVIAVGGKSVP 193 (447)
T ss_dssp --CEEECS-----CEEECCCCSSSG
T ss_pred --CEEECC-----EEEECCCCCcCC
Confidence 235567 999999977654
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.5e-06 Score=95.07 Aligned_cols=40 Identities=25% Similarity=0.473 Sum_probs=35.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
.+||+|||||++|++||..|++. +|.+|+|+||++.+||.
T Consensus 39 ~~dVvIIGgG~aGl~aA~~la~~-~G~~V~viEk~~~~gg~ 78 (284)
T 1rp0_A 39 ETDVVVVGAGSAGLSAAYEISKN-PNVQVAIIEQSVSPGGG 78 (284)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTS-TTSCEEEEESSSSCCTT
T ss_pred ccCEEEECccHHHHHHHHHHHHc-CCCeEEEEECCCCCCCc
Confidence 46999999999999999999993 16999999999888763
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-06 Score=105.01 Aligned_cols=145 Identities=16% Similarity=0.137 Sum_probs=81.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCC-CCC----CCCCCC---------CccCccccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTE-QTG----RDQYGL---------PVHSSMYKSLK 74 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~-~~~----~~~~~~---------~~~~~~y~~l~ 74 (1129)
.++|+|||||++||++|..|++ .|++|+||||.+.++..-.-.. ... .+..|+ +.....+..
T Consensus 49 ~~DVvIVGaG~aGL~~A~~La~--~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~-- 124 (570)
T 3fmw_A 49 TTDVVVVGGGPVGLMLAGELRA--GGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAG-- 124 (570)
T ss_dssp --CEEEECCSHHHHHHHHHHHH--TTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTT--
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCC--
Confidence 3699999999999999999999 6799999999876531100000 000 000111 000000110
Q ss_pred ccCCccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceE
Q psy12350 75 TNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFY 154 (1129)
Q Consensus 75 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1129)
.......+.+.+.+ .+.........+.+.|.+.+.+.++ .|+++++|+.++... +++.+++.+ .+.....
T Consensus 125 --~~~~~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~a~~~gv--~i~~~~~v~~l~~~~---~~v~v~~~~--~~G~~~~ 194 (570)
T 3fmw_A 125 --IFTQGLDFGLVDTR-HPYTGLVPQSRTEALLAEHAREAGA--EIPRGHEVTRLRQDA---EAVEVTVAG--PSGPYPV 194 (570)
T ss_dssp --BCTTCCBGGGSCCS-CCSBBCCCHHHHHHHHHHHHHHHTE--ECCBSCEEEECCBCS---SCEEEEEEE--TTEEEEE
T ss_pred --cccccccccccCCC-CCeeEEeCHHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEcC---CeEEEEEEe--CCCcEEE
Confidence 00001111111100 1112345788899999998888776 789999999987632 334444322 1111456
Q ss_pred EecceeeeEEEEecccCC
Q psy12350 155 LFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 155 ~~d~~~~~~lvvAtG~~~ 172 (1129)
.+| +||.|.|..+
T Consensus 195 ~a~-----~vV~ADG~~S 207 (570)
T 3fmw_A 195 RAR-----YGVGCDGGRS 207 (570)
T ss_dssp EES-----EEEECSCSSC
T ss_pred EeC-----EEEEcCCCCc
Confidence 677 9999999544
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=7.5e-07 Score=103.32 Aligned_cols=145 Identities=15% Similarity=0.139 Sum_probs=79.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCce-EEEEcccCCcCc---eEecCCCCC--CCCCCC---------CccCcccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFT-CTTFEQTDNVGG---TWVYTEQTG--RDQYGL---------PVHSSMYKSL 73 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~-v~v~E~~~~~GG---~w~~~~~~~--~~~~~~---------~~~~~~y~~l 73 (1129)
.++|+|||||++||++|..|++ .|++ |+||||.+.++. .....+..- ....|+ +.....+..
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~--~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~- 80 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQ--AGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYID- 80 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEC-
T ss_pred CCeEEEECCCHHHHHHHHHHHh--CCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEc-
Confidence 4799999999999999999999 6699 999999876542 111100000 000011 000000000
Q ss_pred cccCCcccccc-----CCCCCCCCCCCCCCCHHHHHHHHHHHHHh-cCCcceeEeceeeeeeccccccCCCCceEEeccc
Q psy12350 74 KTNLPKEIMEL-----SGYHHKGHPDKSYIAANDVLEYLNDFADN-FNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIP 147 (1129)
Q Consensus 74 ~~~~~~~~~~~-----~d~~~~~~~~~~~~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~ 147 (1129)
.....+... ..+.++ ...+++..+.++|.+.+.+ .+. ..++++++|+.+.. . +++.+.+.+..
T Consensus 81 --~~g~~~~~~~~~~~~~~~~~----~~~i~r~~l~~~L~~~~~~~~g~-~~v~~~~~v~~i~~-~---~~v~v~~~~~~ 149 (410)
T 3c96_A 81 --QSGATVWSEPRGVEAGNAYP----QYSIHRGELQMILLAAVRERLGQ-QAVRTGLGVERIEE-R---DGRVLIGARDG 149 (410)
T ss_dssp --TTSCEEEEEECGGGGTCSSC----EEEEEHHHHHHHHHHHHHHHHCT-TSEEESEEEEEEEE-E---TTEEEEEEEET
T ss_pred --CCCCEEeeccCCccccCCCC----eeeeeHHHHHHHHHHHHHhhCCC-cEEEECCEEEEEec-C---CccEEEEecCC
Confidence 000000000 011110 1234677888888887765 341 26899999999875 2 34444443211
Q ss_pred cCccceEEecceeeeEEEEecccCC
Q psy12350 148 RDTVGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 148 ~~~~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
+++.....+| .||.|+|..+
T Consensus 150 ~g~~~~~~ad-----~vV~AdG~~S 169 (410)
T 3c96_A 150 HGKPQALGAD-----VLVGADGIHS 169 (410)
T ss_dssp TSCEEEEEES-----EEEECCCTTC
T ss_pred CCCceEEecC-----EEEECCCccc
Confidence 2322456678 9999999554
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.7e-06 Score=100.09 Aligned_cols=36 Identities=33% Similarity=0.479 Sum_probs=31.8
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
||+|||||+||++||..|++ .|.+|+|+||. ..||.
T Consensus 1 DVvVIG~G~AGl~aA~~la~--~G~~V~viek~-~~~g~ 36 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRR--AGKKVTLISKR-IDGGS 36 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHH--TTCCEEEECSS-TTCSS
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEEeCC-CCCch
Confidence 69999999999999999999 56999999998 55554
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.7e-06 Score=104.00 Aligned_cols=153 Identities=11% Similarity=0.021 Sum_probs=82.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCC-CCC-C---CCCC---------CCccCc-ccc--
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTE-QTG-R---DQYG---------LPVHSS-MYK-- 71 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~-~~~-~---~~~~---------~~~~~~-~y~-- 71 (1129)
..+|+|||||++||++|..|++ .|.+|+||||.+.++..-.-.. ... . ...| .+.... .+.
T Consensus 5 ~~dVlIVGaG~aGl~~A~~La~--~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (535)
T 3ihg_A 5 EVDVLVVGAGLGGLSTAMFLAR--QGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIR 82 (535)
T ss_dssp SEEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEE
T ss_pred cCcEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeee
Confidence 4799999999999999999999 6699999999876531100000 000 0 0001 110000 000
Q ss_pred cccccCCcccc----ccC----CCCCCCCCC-CCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceE
Q psy12350 72 SLKTNLPKEIM----ELS----GYHHKGHPD-KSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMC 142 (1129)
Q Consensus 72 ~l~~~~~~~~~----~~~----d~~~~~~~~-~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~ 142 (1129)
.........+. .+. ++... .+. ....+...+.++|.+.+.+.|. .++++++|+.+..... ...+.++
T Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~l~~~L~~~a~~~gv--~i~~~~~v~~i~~~~~-~~~~~v~ 158 (535)
T 3ihg_A 83 LAESVRGEILRTVSESFDDMVAATEPC-TPAGWAMLSQDKLEPILLAQARKHGG--AIRFGTRLLSFRQHDD-DAGAGVT 158 (535)
T ss_dssp EESSSSSCEEEEEESCHHHHHHTTGGG-CSCCCBCCCHHHHHHHHHHHHHHTTC--EEESSCEEEEEEEECG-GGCSEEE
T ss_pred EEeccCCceeeeccccccccccccccC-CCCcccccCHHHHHHHHHHHHHhCCC--EEEeCCEEEEEEECCC-CccccEE
Confidence 00000000110 000 00000 011 2345788999999999988876 8999999999876321 0011233
Q ss_pred EeccccCccceEEecceeeeEEEEecccCC
Q psy12350 143 IIGIPRDTVGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 143 ~~~~~~~~~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
+...+.+......+| +||.|+|..+
T Consensus 159 v~~~~~~~~~~i~a~-----~vV~AdG~~S 183 (535)
T 3ihg_A 159 ARLAGPDGEYDLRAG-----YLVGADGNRS 183 (535)
T ss_dssp EEEEETTEEEEEEEE-----EEEECCCTTC
T ss_pred EEEEcCCCeEEEEeC-----EEEECCCCcc
Confidence 322222223445677 9999999554
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-06 Score=99.11 Aligned_cols=37 Identities=27% Similarity=0.480 Sum_probs=33.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.+||+|||||++|+++|..|++ .|++|+|+||++.+|
T Consensus 4 ~~dvvIIG~G~~Gl~~A~~La~--~G~~V~vlE~~~~~~ 40 (369)
T 3dme_A 4 DIDCIVIGAGVVGLAIARALAA--GGHEVLVAEAAEGIG 40 (369)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCC
Confidence 4799999999999999999999 679999999986555
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=98.29 E-value=9.9e-07 Score=101.17 Aligned_cols=134 Identities=16% Similarity=0.139 Sum_probs=77.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc---CceEecCCCCCCCCCCCCccCccc-cc-ccccC-Cccccc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV---GGTWVYTEQTGRDQYGLPVHSSMY-KS-LKTNL-PKEIME 83 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~---GG~w~~~~~~~~~~~~~~~~~~~y-~~-l~~~~-~~~~~~ 83 (1129)
++|+|||||++||++|..|++.++|++|+||||++.+ |+.....++.-....+ ...+ +. +.... +...+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 76 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPAN----PLSYLDAPERLNPQFLEDFK 76 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTC----GGGGSSCGGGGCCEEECCEE
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcC----cchhhhhhHHHhhccccceE
Confidence 4899999999999999999995337999999998776 5444332221100000 0000 00 00000 000000
Q ss_pred c--CCCCCCC--CCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecce
Q psy12350 84 L--SGYHHKG--HPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQ 159 (1129)
Q Consensus 84 ~--~d~~~~~--~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 159 (1129)
+ .+..+.. .......++.++.+.|.+.+.+.|+ .++++++|++++.. . ...+|
T Consensus 77 ~~~~g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv--~i~~~~~v~~i~~~---------------~----~~~ad-- 133 (381)
T 3c4a_A 77 LVHHNEPSLMSTGVLLCGVERRGLVHALRDKCRSQGI--AIRFESPLLEHGEL---------------P----LADYD-- 133 (381)
T ss_dssp EEESSSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTC--EEETTCCCCSGGGC---------------C----GGGCS--
T ss_pred EEeCCeeEEecCCCceeeecHHHHHHHHHHHHHHCCC--EEEeCCEeccchhc---------------c----cccCC--
Confidence 0 0000000 0000124778999999999988776 89999999877531 0 12367
Q ss_pred eeeEEEEecccCCC
Q psy12350 160 VRFFLQLMQGHVTL 173 (1129)
Q Consensus 160 ~~~~lvvAtG~~~~ 173 (1129)
.||.|+|..+.
T Consensus 134 ---~vV~AdG~~S~ 144 (381)
T 3c4a_A 134 ---LVVLANGVNHK 144 (381)
T ss_dssp ---EEEECCGGGGG
T ss_pred ---EEEECCCCCch
Confidence 99999997664
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.5e-06 Score=104.63 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=81.7
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCC----CCCCCC---------ccCcccccc
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGR----DQYGLP---------VHSSMYKSL 73 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~----~~~~~~---------~~~~~y~~l 73 (1129)
+..++|+|||||+||+++|..|++ .|++|+|+||.+..++.....-.+.. ...|+. .........
T Consensus 21 M~~~DVvIVGgG~AGl~aA~~Lar--~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 98 (591)
T 3i3l_A 21 MTRSKVAIIGGGPAGSVAGLTLHK--LGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLW 98 (591)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEEC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHc--CCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEe
Confidence 345899999999999999999999 56999999997543211000000000 000110 000000000
Q ss_pred cccCCccccccCCCCCC--CCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCcc
Q psy12350 74 KTNLPKEIMELSGYHHK--GHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTV 151 (1129)
Q Consensus 74 ~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 151 (1129)
..........+...... ..+.........+.++|.+.+.+.|+ .++++++|+.+... ....+.+.+.+ .+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv--~i~~g~~V~~v~~~--~g~~~~V~~~~--~G~~ 172 (591)
T 3i3l_A 99 GQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGI--TVHEETPVTDVDLS--DPDRVVLTVRR--GGES 172 (591)
T ss_dssp SSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTC--EEETTCCEEEEECC--STTCEEEEEEE--TTEE
T ss_pred cCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEc--CCCEEEEEEec--CCce
Confidence 00000000111110000 00111235788899999999988776 88999999998753 11233343332 2222
Q ss_pred ceEEecceeeeEEEEecccCC
Q psy12350 152 GFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 152 ~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
.....| .||.|+|..+
T Consensus 173 ~~i~Ad-----lVV~AdG~~S 188 (591)
T 3i3l_A 173 VTVESD-----FVIDAGGSGG 188 (591)
T ss_dssp EEEEES-----EEEECCGGGC
T ss_pred EEEEcC-----EEEECCCCcc
Confidence 456677 9999999543
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.8e-06 Score=99.00 Aligned_cols=137 Identities=15% Similarity=0.122 Sum_probs=79.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce---EecCCCCC--CCCCCC---------CccCcccccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT---WVYTEQTG--RDQYGL---------PVHSSMYKSL 73 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~---w~~~~~~~--~~~~~~---------~~~~~~y~~l 73 (1129)
..++|+|||||++|+++|..|++ .|++|+||||.+.+++. ....+..- ....|+ +.....+..
T Consensus 10 ~~~dVvIVGaG~aGl~~A~~L~~--~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~- 86 (379)
T 3alj_A 10 KTRRAEVAGGGFAGLTAAIALKQ--NGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWM- 86 (379)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEE-
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEe-
Confidence 35799999999999999999999 66999999998776431 11000000 000000 000000000
Q ss_pred cccCCccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccce
Q psy12350 74 KTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGF 153 (1129)
Q Consensus 74 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1129)
. ...+..+ +.+.. .....++..+.++|.+.+.+.|+ .++++++|+.++. ++ .++. .++ ..
T Consensus 87 --~-g~~~~~~---~~~~~-~~~~~~r~~l~~~L~~~~~~~gv--~i~~~~~v~~i~~-----~~-~v~~---~~g--~~ 146 (379)
T 3alj_A 87 --H-NKSVSKE---TFNGL-PWRIMTRSHLHDALVNRARALGV--DISVNSEAVAADP-----VG-RLTL---QTG--EV 146 (379)
T ss_dssp --T-TEEEEEE---CGGGC-CEEEEEHHHHHHHHHHHHHHTTC--EEESSCCEEEEET-----TT-EEEE---TTS--CE
T ss_pred --C-Cceeeec---cCCCC-ceEEECHHHHHHHHHHHHHhcCC--EEEeCCEEEEEEe-----CC-EEEE---CCC--CE
Confidence 0 0001011 10000 11234678899999998888766 8999999998874 22 3332 122 34
Q ss_pred EEecceeeeEEEEecccCC
Q psy12350 154 YLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 154 ~~~d~~~~~~lvvAtG~~~ 172 (1129)
..+| .||.|+|..+
T Consensus 147 ~~ad-----~vV~AdG~~s 160 (379)
T 3alj_A 147 LEAD-----LIVGADGVGS 160 (379)
T ss_dssp EECS-----EEEECCCTTC
T ss_pred EEcC-----EEEECCCccH
Confidence 6788 9999999543
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.3e-06 Score=98.92 Aligned_cols=147 Identities=10% Similarity=0.071 Sum_probs=79.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc---CceEecCCCCC--CCCCCCCc----cCcccccccccC--
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV---GGTWVYTEQTG--RDQYGLPV----HSSMYKSLKTNL-- 77 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~---GG~w~~~~~~~--~~~~~~~~----~~~~y~~l~~~~-- 77 (1129)
.++|+|||||++|+++|..|++ .|++|+||||++.+ |......+..- ....|+.. ....+..+....
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~--~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGR--QGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHD 83 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEET
T ss_pred cCCEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCC
Confidence 4799999999999999999999 66999999998654 11111000000 00001000 000000000000
Q ss_pred CccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhc-CCcceeEeceeeeeeccccccCCCC--ceEEeccccCccceE
Q psy12350 78 PKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNF-NLRNLCLVNKNVQPLYKHLINIEHP--SMCIIGIPRDTVGFY 154 (1129)
Q Consensus 78 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~--~~~~~~~~~~~~~~~ 154 (1129)
......+..-...........++..+.+.|.+.+.+. ++ .++++++|+.++... +++ .++. .++ ...
T Consensus 84 g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~---~~v~g~v~~---~~g--~~~ 153 (399)
T 2x3n_A 84 GELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATV--EMLFETRIEAVQRDE---RHAIDQVRL---NDG--RVL 153 (399)
T ss_dssp TEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTE--EEECSCCEEEEEECT---TSCEEEEEE---TTS--CEE
T ss_pred CCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCc--EEEcCCEEEEEEEcC---CceEEEEEE---CCC--CEE
Confidence 0001111000000000112357788999999888876 66 789999999987632 233 3332 222 256
Q ss_pred EecceeeeEEEEecccCC
Q psy12350 155 LFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 155 ~~d~~~~~~lvvAtG~~~ 172 (1129)
.+| .||.|+|..+
T Consensus 154 ~ad-----~vV~AdG~~s 166 (399)
T 2x3n_A 154 RPR-----VVVGADGIAS 166 (399)
T ss_dssp EEE-----EEEECCCTTC
T ss_pred ECC-----EEEECCCCCh
Confidence 678 9999999544
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.6e-06 Score=98.26 Aligned_cols=142 Identities=20% Similarity=0.313 Sum_probs=79.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC-----cCceEecCCCCCC---CCCCC---------CccCccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN-----VGGTWVYTEQTGR---DQYGL---------PVHSSMY 70 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~-----~GG~w~~~~~~~~---~~~~~---------~~~~~~y 70 (1129)
..++|+|||||++||++|..|++ .|++|+||||++. .|+.|...+..+. ...|+ +.....+
T Consensus 25 ~~~dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~ 102 (398)
T 2xdo_A 25 SDKNVAIIGGGPVGLTMAKLLQQ--NGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIA 102 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHT--TTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEE
Confidence 45799999999999999999999 6699999999864 3555553221110 00111 0000000
Q ss_pred ccccccCCccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCc
Q psy12350 71 KSLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDT 150 (1129)
Q Consensus 71 ~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 150 (1129)
. ........+ .+|...........+..+.++|.+.+.. ..|+++++|+.++... ++|.++. .++
T Consensus 103 ~----~~g~~~~~~-~~~~~~~~~~~~i~r~~l~~~L~~~~~~----~~i~~~~~v~~i~~~~---~~v~v~~---~~g- 166 (398)
T 2xdo_A 103 D----EKGNILSTK-NVKPENRFDNPEINRNDLRAILLNSLEN----DTVIWDRKLVMLEPGK---KKWTLTF---ENK- 166 (398)
T ss_dssp C----SSSEEEEEC-CCGGGTTSSCCEECHHHHHHHHHHTSCT----TSEEESCCEEEEEECS---SSEEEEE---TTS-
T ss_pred C----CCCCchhhc-cccccCCCCCceECHHHHHHHHHhhcCC----CEEEECCEEEEEEECC---CEEEEEE---CCC-
Confidence 0 000000010 0010000011234677888888765543 3789999999997632 3343333 122
Q ss_pred cceEEecceeeeEEEEecccCCC
Q psy12350 151 VGFYLFDLQVRFFLQLMQGHVTL 173 (1129)
Q Consensus 151 ~~~~~~d~~~~~~lvvAtG~~~~ 173 (1129)
....+| .||.|+|..+.
T Consensus 167 -~~~~ad-----~vV~AdG~~S~ 183 (398)
T 2xdo_A 167 -PSETAD-----LVILANGGMSK 183 (398)
T ss_dssp -CCEEES-----EEEECSCTTCS
T ss_pred -cEEecC-----EEEECCCcchh
Confidence 346788 99999996553
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-06 Score=104.52 Aligned_cols=38 Identities=26% Similarity=0.473 Sum_probs=33.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC-CcCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD-NVGG 48 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~-~~GG 48 (1129)
.+||+|||||+||++||..|++ .|.+|+|+|++. .+|+
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr--~G~kVlLIEk~~~~iG~ 65 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAAR--MGAKTAMFVLNADTIGQ 65 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTC
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCCEEEEEecccccCC
Confidence 4799999999999999999999 669999999974 4553
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.3e-06 Score=102.12 Aligned_cols=154 Identities=10% Similarity=0.135 Sum_probs=83.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcC----CCCceEEEEcccCCcCceEecCC--CC-C-------CCCCCCCccCcccc-cc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEP----GSGFTCTTFEQTDNVGGTWVYTE--QT-G-------RDQYGLPVHSSMYK-SL 73 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~----~~~~~v~v~E~~~~~GG~w~~~~--~~-~-------~~~~~~~~~~~~y~-~l 73 (1129)
.+||+|||||||||+||..|++. ++|++|+|+||.+.+|+...... .+ . ....|.+....... .+
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~ 114 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRF 114 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhe
Confidence 36999999999999999999994 22799999999988775321100 00 0 00001111110000 00
Q ss_pred cccCCccccccCCCCC--CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccc----
Q psy12350 74 KTNLPKEIMELSGYHH--KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIP---- 147 (1129)
Q Consensus 74 ~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~---- 147 (1129)
..........++.+|. .........+..++.++|.+.+++.|+ .|+++++|+++.... ++....+...+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv--~i~~g~~v~~l~~~~---~g~V~gV~~~~~g~~ 189 (584)
T 2gmh_A 115 GILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGV--EVYPGYAAAEILFHE---DGSVKGIATNDVGIQ 189 (584)
T ss_dssp EEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTC--EEETTCCEEEEEECT---TSSEEEEEECCEEEC
T ss_pred eeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCC--EEEcCCEEEEEEEcC---CCCEEEEEeCCcccc
Confidence 0000001111211110 000112234778999999999988876 899999999886521 12211132211
Q ss_pred -cCc-------cceEEecceeeeEEEEecccCC
Q psy12350 148 -RDT-------VGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 148 -~~~-------~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
+++ ......| +||+|+|.++
T Consensus 190 ~~G~~~~~~~~g~~i~Ad-----~VV~AdG~~S 217 (584)
T 2gmh_A 190 KDGAPKTTFERGLELHAK-----VTIFAEGCHG 217 (584)
T ss_dssp TTSCEEEEEECCCEEECS-----EEEECCCTTC
T ss_pred CCCCcccccCCceEEECC-----EEEEeeCCCc
Confidence 111 1345667 9999999544
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=3.4e-06 Score=102.13 Aligned_cols=41 Identities=29% Similarity=0.486 Sum_probs=36.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..||+|||||+|||+||..|++ .|.+|+|+||.+.+||...
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~--~G~~V~vlEk~~~~gg~s~ 166 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATD--SGAKVILIEKEPVIGGNAK 166 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTTGG
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCchh
Confidence 4799999999999999999999 5689999999998887544
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.4e-06 Score=101.36 Aligned_cols=150 Identities=13% Similarity=0.097 Sum_probs=82.3
Q ss_pred CCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce---EecCCCC--CCCCCCCC--ccC-cccccccccC
Q psy12350 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT---WVYTEQT--GRDQYGLP--VHS-SMYKSLKTNL 77 (1129)
Q Consensus 6 ~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~---w~~~~~~--~~~~~~~~--~~~-~~y~~l~~~~ 77 (1129)
+.+.++|+||||||+||++|..|++ .|++|+||||.+.++.. ....+.. -.+..|+. ... ..++....
T Consensus 8 ~~~~~dVlIVGaGpaGl~~A~~La~--~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~-- 83 (500)
T 2qa1_A 8 HRSDAAVIVVGAGPAGMMLAGELRL--AGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHF-- 83 (500)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEE--
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccc--
Confidence 4456899999999999999999999 67999999998765321 0000000 00011110 000 00000000
Q ss_pred CccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 78 PKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 78 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
......+.+++.+ .+.....+...+.+.|.+.+.+.+. .|+++++|++++... +++.+++.+ .+......+|
T Consensus 84 ~~~~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~---~~v~v~~~~--~~g~~~~~a~ 155 (500)
T 2qa1_A 84 GGLPIDFGVLEGA-WQAAKTVPQSVTETHLEQWATGLGA--DIRRGHEVLSLTDDG---AGVTVEVRG--PEGKHTLRAA 155 (500)
T ss_dssp TTEEEEGGGSTTG-GGCEEEEEHHHHHHHHHHHHHHTTC--EEEETCEEEEEEEET---TEEEEEEEE--TTEEEEEEES
T ss_pred cceecccccCCCC-CCceeecCHHHHHHHHHHHHHHCCC--EEECCcEEEEEEEcC---CeEEEEEEc--CCCCEEEEeC
Confidence 0000111111000 0011234677889999999988876 899999999987532 233333322 1112245677
Q ss_pred ceeeeEEEEecccCC
Q psy12350 158 LQVRFFLQLMQGHVT 172 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~ 172 (1129)
+||.|.|..|
T Consensus 156 -----~vVgADG~~S 165 (500)
T 2qa1_A 156 -----YLVGCDGGRS 165 (500)
T ss_dssp -----EEEECCCTTC
T ss_pred -----EEEECCCcch
Confidence 9999999654
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.25 E-value=4.2e-07 Score=99.37 Aligned_cols=40 Identities=33% Similarity=0.629 Sum_probs=37.6
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.+|+|||||||||+||..|++ .|++|+||||++.+||.+.
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~--~G~~V~v~Ek~~~~GG~~~ 42 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTA--AGHQVHLFDKSRGSGGRMS 42 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCGGGC
T ss_pred CCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCccc
Confidence 689999999999999999999 6799999999999999876
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=3.2e-06 Score=102.17 Aligned_cols=39 Identities=23% Similarity=0.438 Sum_probs=35.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
..||+|||||+|||+||..|++ .|.+|+||||.+.+||.
T Consensus 121 ~~DVvVVG~G~aGl~aA~~la~--~G~~V~vlEk~~~~gg~ 159 (566)
T 1qo8_A 121 TTQVLVVGAGSAGFNASLAAKK--AGANVILVDKAPFSGGN 159 (566)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--HTCCEEEECSSSSSCTT
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCc
Confidence 4699999999999999999999 56899999999887764
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=5.9e-06 Score=99.36 Aligned_cols=146 Identities=13% Similarity=0.127 Sum_probs=80.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec---CCC-------CCC----CCCCCCccC---cccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY---TEQ-------TGR----DQYGLPVHS---SMYK 71 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~---~~~-------~~~----~~~~~~~~~---~~y~ 71 (1129)
..+|+||||||+||++|..|++ .|.+|+||||.+.++....- .+. -|. ...+.+... ..|.
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~--~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 103 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAH--RQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWV 103 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEe
Confidence 4699999999999999999999 66999999998766422110 000 000 001111110 0110
Q ss_pred cccccCCccccccCCCCCC-------CCC-CCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEE
Q psy12350 72 SLKTNLPKEIMELSGYHHK-------GHP-DKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCI 143 (1129)
Q Consensus 72 ~l~~~~~~~~~~~~d~~~~-------~~~-~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~ 143 (1129)
. ......+..+ +++.. ..+ .....+...+.++|.+.+.+. |+++++|++++... +++.+++
T Consensus 104 ~--~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~-----v~~~~~v~~~~~~~---~~v~v~~ 172 (549)
T 2r0c_A 104 T--RVGGHEVYRI-PLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER-----LRTRSRLDSFEQRD---DHVRATI 172 (549)
T ss_dssp S--SBTSCEEEEE-CCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG-----EECSEEEEEEEECS---SCEEEEE
T ss_pred c--cCCCceeEee-cccccccccccCCCCCcccccCHHHHHHHHHHHHHHh-----cccCcEEEEEEEeC---CEEEEEE
Confidence 0 0000011111 11100 000 112346778888888888764 89999999987532 3444444
Q ss_pred eccccCccceEEecceeeeEEEEecccCC
Q psy12350 144 IGIPRDTVGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 144 ~~~~~~~~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
.+..+++.....+| +||.|+|..+
T Consensus 173 ~~~~~G~~~~i~a~-----~vVgADG~~S 196 (549)
T 2r0c_A 173 TDLRTGATRAVHAR-----YLVACDGASS 196 (549)
T ss_dssp EETTTCCEEEEEEE-----EEEECCCTTC
T ss_pred EECCCCCEEEEEeC-----EEEECCCCCc
Confidence 33222323456677 9999999654
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=7.8e-07 Score=103.10 Aligned_cols=144 Identities=16% Similarity=0.202 Sum_probs=78.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC---ceEecCCCCC--CCCCCC---------CccCcccccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG---GTWVYTEQTG--RDQYGL---------PVHSSMYKSL 73 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G---G~w~~~~~~~--~~~~~~---------~~~~~~y~~l 73 (1129)
++++|+|||||++||++|..|++ .|++|+||||.+.++ ..+...+..- ....|+ +.....+..
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~--~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~- 98 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQ--SGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRD- 98 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEE-
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEE-
Confidence 45899999999999999999999 669999999987652 1111110000 000011 100000000
Q ss_pred cccCCccccccCCCCCC--CCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCcc
Q psy12350 74 KTNLPKEIMELSGYHHK--GHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTV 151 (1129)
Q Consensus 74 ~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 151 (1129)
.........++.-++. ........++..+.+.|.+.+.+ ..|+++++|+.++... ++ +.+.. .+ .
T Consensus 99 -~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~----~~i~~~~~v~~i~~~~---~~--v~v~~-~~--g 165 (407)
T 3rp8_A 99 -FRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR----DSVQFGKRVTRCEEDA---DG--VTVWF-TD--G 165 (407)
T ss_dssp -TTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG----GGEEESCCEEEEEEET---TE--EEEEE-TT--S
T ss_pred -CCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc----CEEEECCEEEEEEecC---Cc--EEEEE-cC--C
Confidence 0000111111100000 00112234678888888888776 3789999999987632 22 33322 12 2
Q ss_pred ceEEecceeeeEEEEecccCC
Q psy12350 152 GFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 152 ~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
....+| .||.|+|..+
T Consensus 166 ~~~~a~-----~vV~AdG~~S 181 (407)
T 3rp8_A 166 SSASGD-----LLIAADGSHS 181 (407)
T ss_dssp CEEEES-----EEEECCCTTC
T ss_pred CEEeeC-----EEEECCCcCh
Confidence 356678 9999999554
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.22 E-value=3.1e-06 Score=97.65 Aligned_cols=140 Identities=19% Similarity=0.174 Sum_probs=75.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc----CceEecCCCCC--CCCCCCCccCccc--cccc--ccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV----GGTWVYTEQTG--RDQYGLPVHSSMY--KSLK--TNL 77 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~----GG~w~~~~~~~--~~~~~~~~~~~~y--~~l~--~~~ 77 (1129)
..++|+|||||++||++|..|++ .|++|+||||++.. |+.+...++.- ....|+....... .... ...
T Consensus 4 ~~~~V~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 81 (397)
T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRD--AGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDAL 81 (397)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETT
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecC
Confidence 35799999999999999999999 67999999998653 22222111000 0001110000000 0000 000
Q ss_pred CccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 78 PKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 78 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
....... ++. ......+..+.++|.+.+. +. .++++++|+++.... +++.++. .+ .....+|
T Consensus 82 ~g~~~~~--~~~----~~~~~~~~~l~~~L~~~~~--~~--~i~~~~~v~~i~~~~---~~v~v~~---~~--g~~~~ad 143 (397)
T 2vou_A 82 TGERVGS--VPA----DWRFTSYDSIYGGLYELFG--PE--RYHTSKCLVGLSQDS---ETVQMRF---SD--GTKAEAN 143 (397)
T ss_dssp TCCEEEE--EEC----CCCEEEHHHHHHHHHHHHC--ST--TEETTCCEEEEEECS---SCEEEEE---TT--SCEEEES
T ss_pred CCCcccc--ccC----cccccCHHHHHHHHHHhCC--Cc--EEEcCCEEEEEEecC---CEEEEEE---CC--CCEEECC
Confidence 0000000 000 0113455677788776642 33 789999999987532 3333332 12 2356788
Q ss_pred ceeeeEEEEecccCC
Q psy12350 158 LQVRFFLQLMQGHVT 172 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~ 172 (1129)
.||.|+|..+
T Consensus 144 -----~vV~AdG~~S 153 (397)
T 2vou_A 144 -----WVIGADGGAS 153 (397)
T ss_dssp -----EEEECCCTTC
T ss_pred -----EEEECCCcch
Confidence 9999999554
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.4e-06 Score=100.02 Aligned_cols=148 Identities=17% Similarity=0.146 Sum_probs=82.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceE---ecCCCC--CCCCCCCC--ccC-cccccccccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTW---VYTEQT--GRDQYGLP--VHS-SMYKSLKTNLPK 79 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w---~~~~~~--~~~~~~~~--~~~-~~y~~l~~~~~~ 79 (1129)
..++|+||||||+||++|..|++ .|++|+||||.+.++..- ...+.. -.+..|+. ... ........ ..
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~--~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~--~~ 86 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRL--GGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHF--GG 86 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEE--TT
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhcccccccee--cc
Confidence 45899999999999999999999 679999999987653210 000000 00001110 000 00000000 00
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecce
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQ 159 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 159 (1129)
....+.+++.+ .+.....+...+.+.|.+.+.+.+. .|+++++|++++... +++.+++.+ .+......+|
T Consensus 87 ~~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~---~~v~v~~~~--~~g~~~~~a~-- 156 (499)
T 2qa2_A 87 RPVDFGVLEGA-HYGVKAVPQSTTESVLEEWALGRGA--ELLRGHTVRALTDEG---DHVVVEVEG--PDGPRSLTTR-- 156 (499)
T ss_dssp EEEEGGGSTTC-CCEEEEEEHHHHHHHHHHHHHHTTC--EEEESCEEEEEEECS---SCEEEEEEC--SSCEEEEEEE--
T ss_pred eecccccCCCC-CCceEecCHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEeC---CEEEEEEEc--CCCcEEEEeC--
Confidence 00111111100 0111234678899999998888876 899999999987532 334443332 1112245667
Q ss_pred eeeEEEEecccCC
Q psy12350 160 VRFFLQLMQGHVT 172 (1129)
Q Consensus 160 ~~~~lvvAtG~~~ 172 (1129)
+||.|.|..|
T Consensus 157 ---~vVgADG~~S 166 (499)
T 2qa2_A 157 ---YVVGCDGGRS 166 (499)
T ss_dssp ---EEEECCCTTC
T ss_pred ---EEEEccCccc
Confidence 9999999654
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.8e-06 Score=95.07 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=35.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
.+||+|||||++||+||..|++...|++|+|+|+...+||.
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg 119 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGG 119 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTT
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCc
Confidence 47999999999999999999995337999999999888753
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.6e-06 Score=102.00 Aligned_cols=147 Identities=12% Similarity=0.052 Sum_probs=78.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc--CceEecCCC--CCCCCCCCCcc--C---cccccccccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV--GGTWVYTEQ--TGRDQYGLPVH--S---SMYKSLKTNLPK 79 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~--GG~w~~~~~--~~~~~~~~~~~--~---~~y~~l~~~~~~ 79 (1129)
.++|+|||||+||+++|..|++ .|++|+|+||.+.+ |..+.-... ......|+... . ..+..+....+.
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~--~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 83 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSR--RGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPD 83 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSS--SSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTT
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCC
Confidence 4799999999999999999999 67999999998753 222110000 00000011000 0 000000000000
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCc-eEEeccccCccceEEecc
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPS-MCIIGIPRDTVGFYLFDL 158 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~ 158 (1129)
.... ++++. .....++..+.+.|.+.+.+.|+ .++++++|+.+.... +... +.+.+..+++.....+|
T Consensus 84 ~~~~---~~~~~--~~~~i~r~~l~~~L~~~a~~~gv--~i~~~~~v~~i~~~~---~~v~gv~~~~~~~G~~~~~~ad- 152 (453)
T 3atr_A 84 MQTV---WTVNG--EGFELNAPLYNQRVLKEAQDRGV--EIWDLTTAMKPIFED---GYVKGAVLFNRRTNEELTVYSK- 152 (453)
T ss_dssp SSCE---EEEEE--EEEEECHHHHHHHHHHHHHHTTC--EEESSEEEEEEEEET---TEEEEEEEEETTTTEEEEEECS-
T ss_pred CceE---EeECC--CcEEEcHHHHHHHHHHHHHHcCC--EEEeCcEEEEEEEEC---CEEEEEEEEEcCCCceEEEEcC-
Confidence 0000 00000 01124677888999888888776 899999999887521 1111 22221102222345677
Q ss_pred eeeeEEEEecccCC
Q psy12350 159 QVRFFLQLMQGHVT 172 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~ 172 (1129)
.||.|+|..+
T Consensus 153 ----~VV~AdG~~s 162 (453)
T 3atr_A 153 ----VVVEATGYSR 162 (453)
T ss_dssp ----EEEECCGGGC
T ss_pred ----EEEECcCCch
Confidence 9999999554
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=6.2e-06 Score=94.54 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=33.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
..+||+|||||++|+++|..|++ .|++|+|+|+....+
T Consensus 16 ~~~dvvIIGgG~~Gl~~A~~La~--~G~~V~llE~~~~~~ 53 (382)
T 1ryi_A 16 RHYEAVVIGGGIIGSAIAYYLAK--ENKNTALFESGTMGG 53 (382)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSTTT
T ss_pred CCCCEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCCCc
Confidence 35799999999999999999999 669999999976443
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=4e-06 Score=91.90 Aligned_cols=41 Identities=22% Similarity=0.519 Sum_probs=35.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC-ceE
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG-GTW 50 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G-G~w 50 (1129)
.||+|||||++|++||..|++.+++++|+|||+++.+| |+|
T Consensus 66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~ 107 (326)
T 2gjc_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW 107 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccccc
Confidence 48999999999999999999954479999999999887 444
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=6.6e-06 Score=101.76 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=33.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.+||+|||||++|+++|..|++ .|.+|+|+||++.+|
T Consensus 272 ~~DVvIIGgGiaGlsaA~~La~--~G~~V~vlEk~~~~g 308 (676)
T 3ps9_A 272 KREAAIIGGGIASALLSLALLR--RGWQVTLYCADEAPA 308 (676)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCccc
Confidence 3799999999999999999999 569999999977665
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.09 E-value=9.4e-06 Score=97.58 Aligned_cols=41 Identities=29% Similarity=0.340 Sum_probs=35.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceE
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTW 50 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w 50 (1129)
..+||+|||||++|+++|..|++ .|++|+|+||++..+|+.
T Consensus 17 ~~~DVvVIGgGi~Gl~~A~~La~--~G~~V~LlEk~d~~~GtS 57 (561)
T 3da1_A 17 KQLDLLVIGGGITGAGIALDAQV--RGIQTGLVEMNDFASGTS 57 (561)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHT--TTCCEEEEESSSTTCSGG
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCCCcc
Confidence 35899999999999999999999 669999999986555543
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.08 E-value=3.3e-06 Score=97.31 Aligned_cols=149 Identities=11% Similarity=0.115 Sum_probs=78.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc------CceEecCCCCC--CCCCCCCc----cCcccccccccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV------GGTWVYTEQTG--RDQYGLPV----HSSMYKSLKTNL 77 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~------GG~w~~~~~~~--~~~~~~~~----~~~~y~~l~~~~ 77 (1129)
++|+|||||++|+++|..|++ .|++|+|+||.+.. ++.... +..- ....|+.. ....+.......
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~~~~g~l~-~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~ 79 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQTPDYVLGRIRAGVLE-QGMVDLLREAGVDRRMARDGLVHEGVEIAF 79 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHH--HTCCEEEECSSCHHHHHTCCCCCEEC-HHHHHHHHHTTCCHHHHHHCEEESCEEEEE
T ss_pred ccEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCCcccCCCceEeEC-HHHHHHHHHcCCcHHHHhcCCccceEEEEE
Confidence 689999999999999999999 66999999997642 111110 0000 00011100 000000000000
Q ss_pred CccccccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEe
Q psy12350 78 PKEIMELSGYHH-KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLF 156 (1129)
Q Consensus 78 ~~~~~~~~d~~~-~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1129)
......+ +++. ............++.+.|.+.+.+.++ .++++++|+++.... .+.+.+++. .+++.....+
T Consensus 80 ~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~--~i~~~~~v~~i~~~~--~~~~~v~~~--~~g~~~~~~a 152 (394)
T 1k0i_A 80 AGQRRRI-DLKRLSGGKTVTVYGQTEVTRDLMEAREACGA--TTVYQAAEVRLHDLQ--GERPYVTFE--RDGERLRLDC 152 (394)
T ss_dssp TTEEEEE-CHHHHHTSCCEEECCHHHHHHHHHHHHHHTTC--EEESSCEEEEEECTT--SSSCEEEEE--ETTEEEEEEC
T ss_pred CCceEEe-ccccccCCCceEEechHHHHHHHHHHHHhcCC--eEEeceeEEEEEEec--CCceEEEEe--cCCcEEEEEe
Confidence 0000000 0000 000011123566778888777777665 899999999987521 123444432 1222224667
Q ss_pred cceeeeEEEEecccCCC
Q psy12350 157 DLQVRFFLQLMQGHVTL 173 (1129)
Q Consensus 157 d~~~~~~lvvAtG~~~~ 173 (1129)
| .||.|+|..+.
T Consensus 153 ~-----~vV~AdG~~S~ 164 (394)
T 1k0i_A 153 D-----YIAGCDGFHGI 164 (394)
T ss_dssp S-----EEEECCCTTCS
T ss_pred C-----EEEECCCCCcH
Confidence 7 99999996553
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.5e-05 Score=96.19 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=36.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.++|+|||||+|||+||..|++ .|++|+||||.+.+||...
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~--~g~~v~~~e~~~~~~~~~~ 166 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARD--AGAKVILLEKEPIPGGNTK 166 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHS--SSCCEEEECSSSSSCTTGG
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCcchh
Confidence 4699999999999999999999 5699999999988876543
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=6.9e-06 Score=97.87 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=36.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceE
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTW 50 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w 50 (1129)
..||+|||||+|||+||..|++ .|.+|+|+||.+.+||.-
T Consensus 41 ~~DVvVVGaG~AGl~AA~~aa~--~G~~V~vlEk~~~~GG~s 80 (510)
T 4at0_A 41 EADVVVAGYGIAGVAASIEAAR--AGADVLVLERTSGWGGAT 80 (510)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTTG
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCcc
Confidence 4799999999999999999999 568999999999887653
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=9.8e-06 Score=94.81 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=35.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccCCcCce
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTDNVGGT 49 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~~~GG~ 49 (1129)
...||+|||||++|++||.+|++ .|+ +|+|+||++..||.
T Consensus 5 ~~~dVvIIGgG~aGlsaA~~La~--~G~~~V~vlE~~~~~~~~ 45 (438)
T 3dje_A 5 KSSSLLIVGAGTWGTSTALHLAR--RGYTNVTVLDPYPVPSAI 45 (438)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHH--TTCCCEEEEESSCSSCTT
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--cCCCcEEEEeCCCCCCCC
Confidence 45799999999999999999999 568 99999998876643
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.3e-05 Score=91.77 Aligned_cols=36 Identities=36% Similarity=0.517 Sum_probs=32.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.+||+|||||++|+++|..|++ .|++|+|+||+. +|
T Consensus 5 ~~dVvIIGgGi~Gl~~A~~La~--~G~~V~lle~~~-~~ 40 (382)
T 1y56_B 5 KSEIVVIGGGIVGVTIAHELAK--RGEEVTVIEKRF-IG 40 (382)
T ss_dssp BCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS-TT
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCC-CC
Confidence 5799999999999999999999 568999999974 54
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.3e-05 Score=95.76 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=34.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC-CcCce
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD-NVGGT 49 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~-~~GG~ 49 (1129)
..+||+|||||+||++||..|++ .|.+|+|+|++. .+|+.
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr--~G~kVlLIEk~~~~iG~~ 60 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVAR--GGLHCLLITSDLSAVARM 60 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCC
T ss_pred CcCCEEEECccHHHHHHHHHHHH--CCCcEEEEEecccccCCC
Confidence 35899999999999999999999 669999999974 46654
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-05 Score=92.00 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=32.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
.||+|||||++|+++|..|++ .|++|+|+||++..
T Consensus 3 ~dvvIIG~Gi~Gl~~A~~La~--~G~~V~vle~~~~~ 37 (372)
T 2uzz_A 3 YDLIIIGSGSVGAAAGYYATR--AGLNVLMTDAHMPP 37 (372)
T ss_dssp EEEEESCTTHHHHHHHHHHHH--TTCCEEEECSSCSS
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCC
Confidence 699999999999999999999 56899999997655
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=2.3e-05 Score=96.98 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=33.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.+||+|||||.+|+++|..|++ .|++|+|+||++.+|
T Consensus 264 ~~DVvIIGgGiaGlsaA~~La~--~G~~V~vlEk~~~~g 300 (689)
T 3pvc_A 264 CDDIAIIGGGIVSALTALALQR--RGAVVTLYCADAQPA 300 (689)
T ss_dssp CSSEEEECCSHHHHHHHHHHHT--TTCCEEEEESSSSTT
T ss_pred CCCEEEECCcHHHHHHHHHHHH--CCCcEEEEeCCCccc
Confidence 4799999999999999999999 569999999987665
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=7.2e-06 Score=93.92 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=33.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.+++|+|||||.+|+++|.+|+ + |++|+|+||++.+|
T Consensus 8 ~~~dv~IIGaGi~Gls~A~~La-~--G~~V~vlE~~~~~g 44 (381)
T 3nyc_A 8 IEADYLVIGAGIAGASTGYWLS-A--HGRVVVLEREAQPG 44 (381)
T ss_dssp EECSEEEECCSHHHHHHHHHHT-T--TSCEEEECSSSSTT
T ss_pred CcCCEEEECCcHHHHHHHHHHh-C--CCCEEEEECCCCcc
Confidence 4589999999999999999999 4 58999999987775
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=4e-06 Score=100.44 Aligned_cols=42 Identities=31% Similarity=0.489 Sum_probs=37.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
+.||+|||||+|||+||..|++. .|++|+|||+++.+||.+.
T Consensus 10 ~~DVvIIGaGisGLsaA~~L~k~-~G~~V~VlE~~~~~GG~~~ 51 (513)
T 4gde_A 10 SVDVLVIGAGPTGLGAAKRLNQI-DGPSWMIVDSNETPGGLAS 51 (513)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHH-CCSCEEEEESSSSCCGGGC
T ss_pred CCCEEEECCcHHHHHHHHHHHhh-CCCCEEEEECCCCCcCCee
Confidence 47999999999999999999873 2699999999999999765
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=3.9e-05 Score=93.89 Aligned_cols=156 Identities=12% Similarity=0.070 Sum_probs=82.6
Q ss_pred cceEEEEcCChHHHHHHHHhhc-CCCCceEEEEcccCCcCceEe---cCCCC--CCCCCCCC---------ccC-ccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTE-PGSGFTCTTFEQTDNVGGTWV---YTEQT--GRDQYGLP---------VHS-SMYKS 72 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~-~~~~~~v~v~E~~~~~GG~w~---~~~~~--~~~~~~~~---------~~~-~~y~~ 72 (1129)
..+|+||||||+||++|..|++ .| .+|+|+||.+.++.... ..+.. -.+..|+. ... ..|..
T Consensus 32 ~~dVlIVGaGpaGL~~A~~La~~~G--~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~ 109 (639)
T 2dkh_A 32 QVDVLIVGCGPAGLTLAAQLAAFPD--IRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKP 109 (639)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTCTT--SCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEE
T ss_pred CCcEEEECcCHHHHHHHHHHHHhCC--CCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECC
Confidence 4799999999999999999998 65 89999999876532110 00000 00001110 000 00100
Q ss_pred ccccCCcccc---ccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeecccccc-CCCCceEEecc-
Q psy12350 73 LKTNLPKEIM---ELSGYHHKG-HPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLIN-IEHPSMCIIGI- 146 (1129)
Q Consensus 73 l~~~~~~~~~---~~~d~~~~~-~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~-~~~~~~~~~~~- 146 (1129)
- ......+. .+++..... .......+...+.++|.+.+.+.+....|+++++|+.+...... ...+.+++.+.
T Consensus 110 ~-~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~ 188 (639)
T 2dkh_A 110 D-PGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCD 188 (639)
T ss_dssp C-TTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECS
T ss_pred C-CCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEecc
Confidence 0 00001111 011000000 00112357788999999999888644478999999998753210 01233333321
Q ss_pred --ccCccceEEecceeeeEEEEecccCC
Q psy12350 147 --PRDTVGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 147 --~~~~~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
..+.......| +||.|+|..+
T Consensus 189 ~~~~G~~~~i~a~-----~vVgADG~~S 211 (639)
T 2dkh_A 189 AAHAGQIETVQAR-----YVVGCDGARS 211 (639)
T ss_dssp GGGTTCEEEEEEE-----EEEECCCTTC
T ss_pred ccCCCCeEEEEeC-----EEEECCCcch
Confidence 12323445677 9999999654
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=97.87 E-value=6.8e-06 Score=96.34 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=41.2
Q ss_pred CCCCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 4 DKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 4 ~~~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..|...+||+|||||.+||+||..|++ .|++|+|+||++.+||.+..
T Consensus 6 ~~~~~~~dvvVIGaG~~GL~aA~~La~--~G~~V~vlE~~~~~GG~~~t 52 (453)
T 2bcg_G 6 ETIDTDYDVIVLGTGITECILSGLLSV--DGKKVLHIDKQDHYGGEAAS 52 (453)
T ss_dssp -CCCCBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCGGGCE
T ss_pred hhccccCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCccccc
Confidence 344556899999999999999999999 66999999999999998863
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=97.86 E-value=8.6e-06 Score=91.69 Aligned_cols=44 Identities=34% Similarity=0.545 Sum_probs=39.8
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc-CCcCceEec
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT-DNVGGTWVY 52 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~-~~~GG~w~~ 52 (1129)
...++|+|||||+|||+||..|++ .|++|+|||++ +.+||.|..
T Consensus 42 ~~~~~V~IIGAGiaGL~aA~~L~~--~G~~V~VlE~~~~~vGGr~~t 86 (376)
T 2e1m_A 42 GPPKRILIVGAGIAGLVAGDLLTR--AGHDVTILEANANRVGGRIKT 86 (376)
T ss_dssp CSCCEEEEECCBHHHHHHHHHHHH--TSCEEEEECSCSSCCBTTCCE
T ss_pred CCCceEEEECCCHHHHHHHHHHHH--CCCcEEEEeccccccCCceee
Confidence 346899999999999999999999 56999999999 999998873
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=4.6e-05 Score=90.49 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=32.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG 48 (1129)
..||+|||||++|+++|..|++ .|++|+|+||++..+|
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~--~G~~V~llE~~~~~~g 40 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAG--RGLSVLMLEAQDLACA 40 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSTTCS
T ss_pred cCCEEEECcCHHHHHHHHHHHh--CCCCEEEEECCCCCCC
Confidence 4799999999999999999999 5699999999764333
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=97.84 E-value=6.2e-06 Score=98.42 Aligned_cols=40 Identities=38% Similarity=0.534 Sum_probs=31.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
|+|+|||||.+||+||.+|++ .|++|+|||+++.+||.+.
T Consensus 2 k~VvVIGaG~~GL~aA~~La~--~G~~V~VlEa~~~~GG~~~ 41 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQA--AGIPVLLLEQRDKPGGRAY 41 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHH--TTCCEEEECCC-------C
T ss_pred CCEEEECCcHHHHHHHHHHHH--CCCcEEEEccCCCCCCcEE
Confidence 689999999999999999999 6799999999999999765
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=1.8e-05 Score=92.16 Aligned_cols=42 Identities=38% Similarity=0.612 Sum_probs=38.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCC-ceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSG-FTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~-~~v~v~E~~~~~GG~w~ 51 (1129)
+++||+|||||+|||+||..|++ .| ++|+|||+++.+||.+.
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~--~g~~~v~v~E~~~~~GG~~~ 47 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQ--AGFHDYTILERTDHVGGKCH 47 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSSCSSTTCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHh--CCCCcEEEEECCCCCCCccc
Confidence 45899999999999999999999 67 89999999999999877
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=97.81 E-value=7.7e-05 Score=86.09 Aligned_cols=38 Identities=24% Similarity=0.389 Sum_probs=32.4
Q ss_pred cceEEEEcCChHHHHHHHHhhc-CCCCceEEEEcccCCcCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTE-PGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~-~~~~~~v~v~E~~~~~GG 48 (1129)
.+||+|||||++|+++|..|++ .| .++|+|+||++ +|+
T Consensus 21 ~~dVvIIG~G~~Gl~~A~~La~~~G-~~~V~vlE~~~-~~~ 59 (405)
T 2gag_B 21 SYDAIIVGGGGHGLATAYFLAKNHG-ITNVAVLEKGW-LAG 59 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHC-CCCEEEECSSS-TTC
T ss_pred cCCEEEECcCHHHHHHHHHHHHhcC-CCcEEEEeCCC-CCC
Confidence 5799999999999999999998 54 17999999987 443
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.79 E-value=8.9e-06 Score=93.57 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=39.8
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
...+||+|||||+|||+||..|++. .|++|+|||+++.+||.+..
T Consensus 5 ~~~~~v~IiGaG~~Gl~aA~~L~~~-~g~~v~v~E~~~~~GG~~~~ 49 (399)
T 1v0j_A 5 TARFDLFVVGSGFFGLTIAERVATQ-LDKRVLVLERRPHIGGNAYS 49 (399)
T ss_dssp CCSCSEEEECCSHHHHHHHHHHHHH-SCCCEEEECSSSSSSGGGCE
T ss_pred cccCCEEEECCCHHHHHHHHHHHHh-CCCCEEEEeCCCCCCCeeee
Confidence 3458999999999999999999994 16899999999999999873
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=7.2e-05 Score=85.81 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=32.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.+||+|||||++|+++|..|++ .|++|+|+||.+..+
T Consensus 3 ~~dvvIIGaG~~Gl~~A~~La~--~G~~V~vie~~~~~~ 39 (389)
T 2gf3_A 3 HFDVIVVGAGSMGMAAGYQLAK--QGVKTLLVDAFDPPH 39 (389)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCSSC
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCC
Confidence 3799999999999999999999 569999999976544
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=1.2e-05 Score=96.19 Aligned_cols=42 Identities=33% Similarity=0.608 Sum_probs=38.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCC-ceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSG-FTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~-~~v~v~E~~~~~GG~w~ 51 (1129)
..++|+|||||+|||+||..|++ .| ++|+|||+++.+||.+.
T Consensus 7 ~~~~VvIIGaG~aGL~AA~~L~~--~G~~~V~VlEa~~riGGr~~ 49 (516)
T 1rsg_A 7 AKKKVIIIGAGIAGLKAASTLHQ--NGIQDCLVLEARDRVGGRLQ 49 (516)
T ss_dssp EEEEEEEECCBHHHHHHHHHHHH--TTCCSEEEECSSSSSBTTCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--cCCCCEEEEeCCCCCCCcee
Confidence 45799999999999999999999 67 89999999999999775
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00019 Score=86.49 Aligned_cols=36 Identities=28% Similarity=0.517 Sum_probs=32.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..||+|||||+|||+||..|++ .|.+|+|+||....
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~--~G~~V~vlEK~~~~ 42 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQ--SGQTCALLSKVFPT 42 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCGG
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCC
Confidence 4799999999999999999999 56899999998655
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=2.2e-05 Score=89.22 Aligned_cols=42 Identities=21% Similarity=0.391 Sum_probs=38.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..++|+|||||++||+||..|++ .|.+|+|+|+++.+||.|.
T Consensus 28 ~~~dv~IIGaG~aGl~aA~~l~~--~g~~v~v~E~~~~~GG~~~ 69 (397)
T 3hdq_A 28 KGFDYLIVGAGFAGSVLAERLAS--SGQRVLIVDRRPHIGGNAY 69 (397)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSSGGGC
T ss_pred CCCCEEEECccHHHHHHHHHHHH--CCCceEEEeccCCCCCccc
Confidence 35799999999999999999999 5689999999999999987
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=1.8e-05 Score=92.29 Aligned_cols=41 Identities=32% Similarity=0.485 Sum_probs=38.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
+||+|||||++||+||..|++ .|++|+|+|+++.+||.+..
T Consensus 2 ~dVvVIGaG~aGl~aA~~L~~--~G~~V~vlE~~~~~GG~~~t 42 (431)
T 3k7m_X 2 YDAIVVGGGFSGLKAARDLTN--AGKKVLLLEGGERLGGRAYS 42 (431)
T ss_dssp EEEEEECCBHHHHHHHHHHHH--TTCCEEEECSSSSSBTTCCE
T ss_pred CCEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCccCeecc
Confidence 699999999999999999999 56899999999999998863
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=97.67 E-value=1.8e-05 Score=94.67 Aligned_cols=41 Identities=37% Similarity=0.638 Sum_probs=38.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.+||+|||||+|||+||..|++ .|++|+|||+++.+||.+.
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~--~G~~V~vlE~~~~~GGr~~ 44 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHD--SGLNVVVLEARDRVGGRTY 44 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHH--TTCCEEEECSSSSSBTTCC
T ss_pred CceEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCcee
Confidence 4799999999999999999999 5689999999999999875
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0001 Score=89.21 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=32.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..||+|||||+|||+||..|++.|++.+|+|+||....
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~ 42 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPM 42 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGG
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence 46999999999999999999994433899999997644
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00013 Score=88.04 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=32.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..||+|||||+|||+||..|++ .|.+|+|+||....
T Consensus 18 ~~DVvVVG~G~AGl~AAl~aa~--~G~~V~vlEK~~~~ 53 (621)
T 2h88_A 18 EFDAVVVGAGGAGLRAAFGLSE--AGFNTACVTKLFPT 53 (621)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCGG
T ss_pred cCCEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCC
Confidence 4699999999999999999999 56899999997643
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.66 E-value=2.2e-05 Score=91.24 Aligned_cols=40 Identities=30% Similarity=0.570 Sum_probs=37.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
|||+|||||++||+||..|++ .|++|+||||++.+||.+.
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~--~G~~V~vlE~~~~~GG~~~ 40 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLAR--NGHEIIVLEKSAMIGGRFT 40 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTSS
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCCCceeE
Confidence 589999999999999999999 5699999999999999876
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=8.8e-05 Score=90.89 Aligned_cols=36 Identities=22% Similarity=0.487 Sum_probs=31.9
Q ss_pred cceEEEEcCChHHHHHHHHhhc-----CCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTE-----PGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~-----~~~~~~v~v~E~~~~~ 46 (1129)
..+|+||||||+||++|..|++ .| ++|+||||++..
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~G--i~v~viE~~~~~ 48 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPD--LKVRIIDKRSTK 48 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTT--CCEEEECSSSSC
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCC--CCEEEEeCCCCC
Confidence 4799999999999999999998 65 899999997643
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=8.7e-05 Score=93.92 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=31.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~~ 45 (1129)
..||+|||||++|+++|.+|++ .|. +|+|+||+..
T Consensus 4 ~~dVvIIGgGi~Gls~A~~La~--~G~~~V~vlE~~~~ 39 (830)
T 1pj5_A 4 TPRIVIIGAGIVGTNLADELVT--RGWNNITVLDQGPL 39 (830)
T ss_dssp CCCEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSCT
T ss_pred CCCEEEECcCHHHHHHHHHHHh--CCCCcEEEEeCCCC
Confidence 4799999999999999999999 567 8999999775
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=3.8e-05 Score=91.23 Aligned_cols=43 Identities=28% Similarity=0.509 Sum_probs=38.6
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
...++|+|||||+|||+||..|++ .|++|+|||+++.+||.+.
T Consensus 9 ~~~~~v~IIGaG~aGl~aA~~L~~--~g~~v~v~E~~~~~GG~~~ 51 (489)
T 2jae_A 9 KGSHSVVVLGGGPAGLCSAFELQK--AGYKVTVLEARTRPGGRVW 51 (489)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTCC
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH--CCCCEEEEeccCCCCCcee
Confidence 456899999999999999999999 6689999999999999643
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.61 E-value=8.3e-05 Score=85.77 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=32.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
.+||+|||||++|+++|..|++..+|++|+|+||+..
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~ 72 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGL 72 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCS
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 3799999999999999999999522799999999753
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=3.2e-05 Score=88.25 Aligned_cols=41 Identities=27% Similarity=0.519 Sum_probs=38.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.++|+|||||++|+++|..|++ .|++|+|||+++.+||.|.
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~--~g~~v~v~E~~~~~GG~~~ 43 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAE--KGHQVHIIDQRDHIGGNSY 43 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSSGGGC
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCcEEEEEecCCcCCccc
Confidence 3799999999999999999999 5699999999999999986
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=3e-05 Score=92.58 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=32.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
..||+|||||+|||+||..|++ | .+|+|+||.+..||.
T Consensus 8 ~~DVvVVG~G~AGl~aAl~la~-G--~~V~vlEk~~~~~g~ 45 (540)
T 1chu_A 8 SCDVLIIGSGAAGLSLALRLAD-Q--HQVIVLSKGPVTEGS 45 (540)
T ss_dssp ECSEEEECCSHHHHHHHHHHTT-T--SCEEEECSSCTTC--
T ss_pred CCCEEEECccHHHHHHHHHHhc-C--CcEEEEECCCCCCCC
Confidence 4799999999999999999998 5 899999998876653
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.59 E-value=3e-05 Score=90.27 Aligned_cols=40 Identities=35% Similarity=0.661 Sum_probs=37.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
|||+|||||.+||+||.+|++ .|++|+|||+++.+||.+.
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~--~G~~V~vlE~~~~~GG~~~ 40 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSK--AGHEVEVFERLPITGGRFT 40 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHH--TTCEEEEECSSSSSBTTSS
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCceEEEeCCCCCCCcee
Confidence 589999999999999999999 5699999999999999876
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00013 Score=87.22 Aligned_cols=61 Identities=10% Similarity=0.132 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHh-cCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecccCC
Q psy12350 98 IAANDVLEYLNDFADN-FNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 98 ~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
.+...+.++|.+.+.+ .|+ .++++ +|+.+.... +++.+.+.. .++ .....| +||.|+|..+
T Consensus 172 ~~r~~l~~~L~~~a~~~~Gv--~i~~~-~v~~i~~~~---~g~~~~v~~-~~g--~~i~ad-----~vV~AdG~~S 233 (526)
T 2pyx_A 172 LNAAKFSQLLTEHCTQKLGV--THIRD-HVSQIINNQ---HGDIEKLIT-KQN--GEISGQ-----LFIDCTGAKS 233 (526)
T ss_dssp ECHHHHHHHHHHHHHHTSCC--EEEEC-CEEEEEECT---TSCEEEEEE-SSS--CEEECS-----EEEECSGGGC
T ss_pred EcHHHHHHHHHHHHHhcCCC--EEEEe-EEEEEEecC---CCcEEEEEE-CCC--CEEEcC-----EEEECCCcch
Confidence 4778899999999988 777 78888 598886521 233333332 122 235677 9999999544
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00036 Score=84.91 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=32.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..||+|||||.|||+||..|++ .|.+|+|+||....
T Consensus 5 ~~DVvVIGgG~AGL~AAl~aae--~G~~V~vlEK~~~~ 40 (660)
T 2bs2_A 5 YCDSLVIGGGLAGLRAAVATQQ--KGLSTIVLSLIPVK 40 (660)
T ss_dssp ECSEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCGG
T ss_pred cccEEEECchHHHHHHHHHHHH--CCCcEEEEeccCCC
Confidence 4799999999999999999999 56899999997654
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00014 Score=87.37 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=32.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCC-CCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPG-SGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~-~~~~v~v~E~~~ 44 (1129)
+.++|+|||||+||+++|..|++.. .|.+|+|+|+.+
T Consensus 24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 61 (550)
T 2e4g_A 24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD 61 (550)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence 3579999999999999999999943 458999999964
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=97.52 E-value=4.9e-05 Score=90.58 Aligned_cols=42 Identities=33% Similarity=0.590 Sum_probs=38.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
+.++|+|||||++||+||..|++ .|++|+|||+++.+||.+.
T Consensus 12 ~~~~v~iiG~G~~Gl~aA~~l~~--~g~~v~v~E~~~~~GG~~~ 53 (504)
T 1sez_A 12 SAKRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEGKAGGKLR 53 (504)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHT--TSCEEEEECSSSSSCSSCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCcEEEEEeCCCCCCcee
Confidence 45799999999999999999999 5699999999999999876
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00016 Score=86.83 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=30.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCC-CCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPG-SGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~-~~~~v~v~E~~~ 44 (1129)
.++|+|||||++|+++|..|++.. .|++|+|+|+..
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 41 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA 41 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 479999999999999999999822 348999999954
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=4.1e-05 Score=89.94 Aligned_cols=41 Identities=29% Similarity=0.589 Sum_probs=38.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.++|+|||||+|||+||..|++ .|++|+|||+++.+||.+.
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~--~g~~v~v~E~~~~~GG~~~ 45 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRK--AGLSVAVIEARDRVGGRTW 45 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTTCC
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEECCCCCCCcee
Confidence 4799999999999999999999 5689999999999999876
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=4.9e-05 Score=89.65 Aligned_cols=44 Identities=39% Similarity=0.415 Sum_probs=38.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..++|+|||||++||+||..|++.| +.+|+|||+++.+||.|..
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g-~~~v~v~E~~~~~GG~~~~ 51 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELG-YKNWHLYECNDTPGGLSRS 51 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESSSSSSGGGCE
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcC-CCCEEEEeCCCCCCCeeee
Confidence 3579999999999999999999943 2799999999999999884
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.49 E-value=5.8e-05 Score=89.29 Aligned_cols=40 Identities=28% Similarity=0.461 Sum_probs=37.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCc--eEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGF--TCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~--~v~v~E~~~~~GG~w~ 51 (1129)
+||+|||||.+||+||.+|++. |. +|+|||+++.+||.+.
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~--G~~~~V~vlEa~~~~GG~~~ 44 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRA--PCPPKVVLVESSERLGGWIR 44 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTS--SSCCEEEEECSSSSSBTTCC
T ss_pred ceEEEECCcHHHHHHHHHHHhC--CCCCcEEEEeCCCCCCCceE
Confidence 6999999999999999999994 57 9999999999999876
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=97.49 E-value=5.1e-05 Score=86.07 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=37.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
+||+|||||++||+||..|++ .|++|+|+|+++.+||.+.
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~--~g~~v~v~E~~~~~GG~~~ 41 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKK--LNKKVLVIEKRNHIGGNAY 41 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGG--GTCCEEEECSSSSSSGGGC
T ss_pred CCEEEECcCHHHHHHHHHHHh--CCCcEEEEecCCCCCcceE
Confidence 689999999999999999999 5689999999999999886
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=97.47 E-value=5.2e-05 Score=89.60 Aligned_cols=44 Identities=23% Similarity=0.374 Sum_probs=39.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
++||+|||||++||+||..|++.|++++|+|||+++.+||.+..
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~ 47 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVAT 47 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCE
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEE
Confidence 47999999999999999999995555999999999999998763
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.45 E-value=4.6e-05 Score=89.96 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=38.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCC----CCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPG----SGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~----~~~~v~v~E~~~~~GG~w~ 51 (1129)
+++|+|||||.+||+||..|++.| ++++|+|||+++.+||...
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~ 51 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQ 51 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEE
Confidence 379999999999999999999944 3499999999999998766
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=97.44 E-value=6.6e-05 Score=89.24 Aligned_cols=40 Identities=45% Similarity=0.654 Sum_probs=37.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
+||+|||||+|||+||..|++ .|++|+|||+++.+||.+.
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~--~g~~v~v~E~~~~~GGr~~ 79 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTV--AGFKTLLLEARDRIGGRSW 79 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHH--TTCCEEEECSSSBSBTTCC
T ss_pred CCEEEECCcHHHHHHHHHHHH--CCCCEEEEeCCCCCCCcce
Confidence 799999999999999999999 5699999999999999765
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.39 E-value=5.8e-05 Score=82.00 Aligned_cols=42 Identities=29% Similarity=0.437 Sum_probs=39.0
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
.-||+||||||+||++|..|.+.| ++|+||||++.+||.+..
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G--~~V~v~Ek~~~~GG~~~~ 43 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAG--HQVHLFDKSRGSGGRMSS 43 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGCE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCCcccc
Confidence 458999999999999999999999 999999999999998763
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=8.1e-05 Score=88.03 Aligned_cols=42 Identities=26% Similarity=0.556 Sum_probs=37.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..+||+|||||++||+||..|++ .|++|+|||+++.+||.+.
T Consensus 15 ~~~~v~iiG~G~~Gl~aa~~l~~--~g~~v~v~E~~~~~GGr~~ 56 (478)
T 2ivd_A 15 TGMNVAVVGGGISGLAVAHHLRS--RGTDAVLLESSARLGGAVG 56 (478)
T ss_dssp --CCEEEECCBHHHHHHHHHHHT--TTCCEEEECSSSSSBTTCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCCEEEEEcCCCCCceee
Confidence 35799999999999999999999 5699999999999999776
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=97.38 E-value=9.9e-05 Score=85.26 Aligned_cols=34 Identities=32% Similarity=0.728 Sum_probs=31.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
+||+||||||+||++|..|++ .|++|+||||.+.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~--~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRK--HGIKVTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCCEEEEecCCC
Confidence 699999999999999999999 6799999999764
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00012 Score=85.04 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=39.9
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
...++|+|||||++|++||..|++ .|++|+|+|+++.+||.|..
T Consensus 4 ~~~~~v~iiG~G~~gl~~a~~l~~--~g~~v~~~e~~~~~gg~~~s 47 (433)
T 1d5t_A 4 DEEYDVIVLGTGLTECILSGIMSV--NGKKVLHMDRNPYYGGESSS 47 (433)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTTSCE
T ss_pred CCcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCccccccc
Confidence 345899999999999999999999 66999999999999999873
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00011 Score=87.40 Aligned_cols=42 Identities=29% Similarity=0.509 Sum_probs=38.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..++|+|||||++||+||..|++ .|++|+|+|+++.+||.+.
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~--~g~~v~vlE~~~~~gg~~~ 73 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAG--AGHQVTVLEASERPGGRVR 73 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHH--HTCEEEEECSSSSSBTTCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--CCCeEEEEECCCCCCCcee
Confidence 35799999999999999999999 5699999999999999764
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00017 Score=83.53 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=40.7
Q ss_pred CCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 6 ~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
|...+||+|||||.+|+++|..|++ .|++|+++||++.+||.+..
T Consensus 17 ~~~~~dv~iiG~G~~g~~~a~~l~~--~g~~v~~~e~~~~~Gg~~~s 61 (475)
T 3p1w_A 17 QGEHYDVIILGTGLKECILSGLLSH--YGKKILVLDRNPYYGGETAS 61 (475)
T ss_dssp CCCEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCGGGCE
T ss_pred ccccCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeccCCCCCCccc
Confidence 4456899999999999999999999 67999999999999998874
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00052 Score=81.73 Aligned_cols=61 Identities=18% Similarity=0.148 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecccCC
Q psy12350 98 IAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 98 ~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
.+...+.+.|.+.+.+.|+ .++++ +|+.+.... +++.+.+.. .++ .....| .||.|+|..+
T Consensus 170 ~~~~~l~~~L~~~a~~~gv--~~~~~-~v~~i~~~~---~~~~~~v~~-~~g--~~~~ad-----~vV~A~G~~S 230 (511)
T 2weu_A 170 FDADEVARYLSEYAIARGV--RHVVD-DVQHVGQDE---RGWISGVHT-KQH--GEISGD-----LFVDCTGFRG 230 (511)
T ss_dssp ECHHHHHHHHHHHHHHTTC--EEEEC-CEEEEEECT---TSCEEEEEE-SSS--CEEECS-----EEEECCGGGC
T ss_pred EcHHHHHHHHHHHHHHCCC--EEEEC-eEeEEEEcC---CCCEEEEEE-CCC--CEEEcC-----EEEECCCcch
Confidence 4778899999999988776 78888 898886521 233233332 222 346677 9999999554
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0002 Score=87.84 Aligned_cols=42 Identities=36% Similarity=0.566 Sum_probs=38.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..++|+|||||++||+||..|.+ .|++|+|||+++.+||.+.
T Consensus 106 ~~~~v~viG~G~~gl~~a~~l~~--~g~~v~~~e~~~~~gg~~~ 147 (662)
T 2z3y_A 106 KTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARDRVGGRVA 147 (662)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHH--TTCEEEEECSSSSSBTTCC
T ss_pred CCCeEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCccc
Confidence 35799999999999999999999 6799999999999999765
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00024 Score=88.45 Aligned_cols=42 Identities=36% Similarity=0.566 Sum_probs=38.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..++|+|||||++||+||..|.+ .|++|+|||+++.+||.+.
T Consensus 277 ~~~~v~viG~G~aGl~~A~~l~~--~g~~v~v~E~~~~~GG~~~ 318 (852)
T 2xag_A 277 KTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARDRVGGRVA 318 (852)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCcCCCcee
Confidence 35799999999999999999999 6799999999999999754
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00025 Score=81.49 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=32.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..||+|||||++|+++|..|++ .|++|+|+||.+..
T Consensus 4 ~~DVvIIGaG~~Gl~~A~~La~--~G~~V~vlE~~~~~ 39 (397)
T 2oln_A 4 SYDVVVVGGGPVGLATAWQVAE--RGHRVLVLERHTFF 39 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTT
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCC
Confidence 4799999999999999999999 56999999997643
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00019 Score=84.54 Aligned_cols=43 Identities=35% Similarity=0.581 Sum_probs=37.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~~~GG~w~~ 52 (1129)
..++|+|||||++||++|..|.+ .|+ +|+|||+++.+||.|..
T Consensus 3 ~~~~~~iiG~G~~g~~~a~~l~~--~g~~~v~~~e~~~~~gg~~~~ 46 (472)
T 1b37_A 3 VGPRVIVVGAGMSGISAAKRLSE--AGITDLLILEATDHIGGRMHK 46 (472)
T ss_dssp --CCEEEECCBHHHHHHHHHHHH--TTCCCEEEECSSSSSBTTSCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--cCCCceEEEeCCCCCCCceee
Confidence 34799999999999999999999 567 89999999999998874
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00022 Score=82.75 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=31.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+||||||+|+++|..|++ .|++|+|+||++
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~--~G~~V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQ--HDVDVTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHH--TTCEEEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHH--CCCeEEEEcCCC
Confidence 3699999999999999999999 679999999965
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00028 Score=76.89 Aligned_cols=34 Identities=29% Similarity=0.535 Sum_probs=30.8
Q ss_pred CeEEEEcCCccHHHHHHHHHhc-CCEEEEEecCCC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATT-GKQAVVVGSGQS 903 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~-~~~V~vv~~~~~ 903 (1129)
.+|+|||+|.+|+.+|..|++. |.+|+++++.+.
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~ 74 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 74 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCC
Confidence 3699999999999999999997 999999988653
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00066 Score=76.88 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=31.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..+||+|||||.+|+++|..|++ .|++|+|+||+.
T Consensus 5 ~~~dVvVIG~Gi~Gls~A~~La~--~G~~V~vle~~~ 39 (363)
T 1c0p_A 5 SQKRVVVLGSGVIGLSSALILAR--KGYSVHILARDL 39 (363)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--CCCEEEEEeccC
Confidence 34799999999999999999999 569999999965
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00056 Score=82.91 Aligned_cols=40 Identities=20% Similarity=0.393 Sum_probs=36.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceE
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTW 50 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w 50 (1129)
.++|+|||||++|++||..|++ .|++|+|+||.+..||.+
T Consensus 46 ~~dvvIIG~G~aGl~aA~~l~~--~G~~V~liE~~~~~gg~~ 85 (623)
T 3pl8_A 46 KYDVVIVGSGPIGCTYARELVG--AGYKVAMFDIGEIDSGLK 85 (623)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCCCSSSS
T ss_pred cCCEEEECCcHHHHHHHHHHHh--CCCcEEEEeccCCCCCcc
Confidence 4799999999999999999999 679999999998888744
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00048 Score=77.63 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=31.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCC----CCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPG----SGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~----~~~~v~v~E~~~ 44 (1129)
|||+|||||.+|+++|..|++.| ++.+|+|+|++.
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 58999999999999999999954 348999999976
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00069 Score=83.84 Aligned_cols=39 Identities=33% Similarity=0.645 Sum_probs=36.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
.++|+|||||++||+||..|++ .|++|+|+|+++.+||.
T Consensus 336 ~~~v~viG~G~~Gl~aA~~l~~--~g~~v~v~E~~~~~ggr 374 (776)
T 4gut_A 336 NKSVIIIGAGPAGLAAARQLHN--FGIKVTVLEAKDRIGGR 374 (776)
T ss_dssp SCEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSSSCTT
T ss_pred CCeEEEECCCHHHHHHHHHHHH--CCCcEEEEecccceece
Confidence 4799999999999999999999 56899999999999984
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0006 Score=82.51 Aligned_cols=38 Identities=32% Similarity=0.610 Sum_probs=33.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCC------CCceEEEEcccC-Cc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPG------SGFTCTTFEQTD-NV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~------~~~~v~v~E~~~-~~ 46 (1129)
.++|+|||||+|||+||..|.+.| .+++|+|||+++ .+
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 479999999999999999999833 118999999998 89
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00083 Score=78.49 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=32.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCC-ceEEEEcccCCcC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSG-FTCTTFEQTDNVG 47 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~-~~v~v~E~~~~~G 47 (1129)
..+||+|||||++|+++|..|++ .| .+|+|+||+..+|
T Consensus 22 ~~~dVvIIGgGiaGls~A~~La~--~G~~~V~vlE~~~~~~ 60 (448)
T 3axb_A 22 PRFDYVVVGAGVVGLAAAYYLKV--WSGGSVLVVDAGHAPG 60 (448)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH--HHCSCEEEEESSSSTT
T ss_pred CcCCEEEECcCHHHHHHHHHHHh--CCCCcEEEEccCCCCC
Confidence 45799999999999999999999 56 7999999954443
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0014 Score=72.37 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=32.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
++|+|||||+||+.||..|++ .|++|+|+|++...+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~--~G~~V~liE~~~~~~ 37 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLR--LGVPVRLFEMRPKRM 37 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHH--TTCCEEEECCTTTSC
T ss_pred CCEEEECchHHHHHHHHHHHH--CCCcEEEEeccCCcC
Confidence 589999999999999999999 679999999977443
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0049 Score=70.82 Aligned_cols=33 Identities=12% Similarity=0.294 Sum_probs=30.5
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
-||+|||+|.+|+=+|..|++.|.+|+|+++.+
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~ 34 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNS 34 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 379999999999999999999999999998754
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0032 Score=74.33 Aligned_cols=36 Identities=28% Similarity=0.519 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCC
Q psy12350 868 AGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQS 903 (1129)
Q Consensus 868 ~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~ 903 (1129)
..++|+|||||.+|+.+|..|++.|.+|+++++.+.
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~ 126 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIK 126 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSS
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccc
Confidence 357899999999999999999999999999988653
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0059 Score=69.42 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=32.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCC
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQS 903 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~ 903 (1129)
..+|+|||+|.+|+.+|..|++.|.+|+++++.+.
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 45 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSE 45 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 46899999999999999999999999999988653
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0012 Score=74.17 Aligned_cols=40 Identities=30% Similarity=0.392 Sum_probs=37.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEccc-CCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQA-DNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~-~~~GG~w~ 781 (1129)
.+++|||+|++||++|..|.+.| ++|+|||++ +.+||.|.
T Consensus 45 ~~V~IIGAGiaGL~aA~~L~~~G--~~V~VlE~~~~~vGGr~~ 85 (376)
T 2e1m_A 45 KRILIVGAGIAGLVAGDLLTRAG--HDVTILEANANRVGGRIK 85 (376)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTS--CEEEEECSCSSCCBTTCC
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--CcEEEEeccccccCCcee
Confidence 46899999999999999999999 999999999 99999887
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0013 Score=78.42 Aligned_cols=41 Identities=29% Similarity=0.385 Sum_probs=36.9
Q ss_pred ccCccccccCCchhhHHHHHHhh-CCCcceEEEcccCCcCcccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEA-GNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~-g~~~~v~v~E~~~~~GG~w~ 781 (1129)
.-+++|||||++||+||..|.+. | .+|+|+|+++.+||...
T Consensus 10 ~~DVvIIGaGisGLsaA~~L~k~~G--~~V~VlE~~~~~GG~~~ 51 (513)
T 4gde_A 10 SVDVLVIGAGPTGLGAAKRLNQIDG--PSWMIVDSNETPGGLAS 51 (513)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCC--SCEEEEESSSSCCGGGC
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCC--CCEEEEECCCCCcCCee
Confidence 35789999999999999999875 8 99999999999999654
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0011 Score=78.76 Aligned_cols=40 Identities=38% Similarity=0.473 Sum_probs=31.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
.+|+|||+|.+||+||..|.+.| ++|+|+|+++.+||...
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G--~~V~VlEa~~~~GG~~~ 41 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAG--IPVLLLEQRDKPGGRAY 41 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTT--CCEEEECCC-------C
T ss_pred CCEEEECCcHHHHHHHHHHHHCC--CcEEEEccCCCCCCcEE
Confidence 47899999999999999999999 99999999999999544
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0078 Score=68.85 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=31.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCC
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQS 903 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~ 903 (1129)
..+|+|||||.+|+-+|..|++.|.+|+++++.+.
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 39 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 46899999999999999999999999999988654
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.003 Score=75.83 Aligned_cols=39 Identities=31% Similarity=0.450 Sum_probs=33.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
.+||+|||||.+|+++|..|++ .|++|+|+||++..+|+
T Consensus 32 ~~DVvVIGgGi~G~~~A~~La~--rG~~V~LlE~~~~~~Gt 70 (571)
T 2rgh_A 32 ELDLLIIGGGITGAGVAVQAAA--SGIKTGLIEMQDFAEGT 70 (571)
T ss_dssp CBSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSTTCSG
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCc
Confidence 4799999999999999999999 56999999997644443
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0053 Score=70.31 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=31.1
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQS 903 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~ 903 (1129)
.+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~ 40 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARR 40 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 4799999999999999999999999999987643
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0025 Score=72.19 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=39.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT 783 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~ 783 (1129)
..+++|||+|++|+++|..|.+.| .+|+|+|+++.+||.|...
T Consensus 29 ~~dv~IIGaG~aGl~aA~~l~~~g--~~v~v~E~~~~~GG~~~~~ 71 (397)
T 3hdq_A 29 GFDYLIVGAGFAGSVLAERLASSG--QRVLIVDRRPHIGGNAYDC 71 (397)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSSGGGCCE
T ss_pred CCCEEEECccHHHHHHHHHHHHCC--CceEEEeccCCCCCcccee
Confidence 347899999999999999999999 9999999999999999854
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0024 Score=74.04 Aligned_cols=40 Identities=33% Similarity=0.413 Sum_probs=37.2
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
+++|||+|++|+++|+.|.+.| .+|+|+|+++.+||.+..
T Consensus 3 dVvVIGaG~aGl~aA~~L~~~G--~~V~vlE~~~~~GG~~~t 42 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTNAG--KKVLLLEGGERLGGRAYS 42 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHHTT--CCEEEECSSSSSBTTCCE
T ss_pred CEEEECCcHHHHHHHHHHHHcC--CeEEEEecCCCccCeecc
Confidence 6799999999999999999999 999999999999997753
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0056 Score=72.48 Aligned_cols=34 Identities=29% Similarity=0.517 Sum_probs=31.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
.++|+|||+|.+|+-+|..|++.|.+|++++++.
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~ 140 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccC
Confidence 4689999999999999999999999999999864
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0027 Score=72.54 Aligned_cols=40 Identities=28% Similarity=0.454 Sum_probs=35.4
Q ss_pred eeccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 737 IKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 737 ~~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
|...+|+|||+|++|+++|..|.+.| ++|+||||++.+|.
T Consensus 2 Me~yDViIVGaGpaGl~~A~~La~~G--~~V~v~Er~~~~~~ 41 (397)
T 3oz2_A 2 METYDVLVVGGGPGGSTAARYAAKYG--LKTLMIEKRPEIGS 41 (397)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSTTC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCC
Confidence 34458999999999999999999999 99999999887653
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.017 Score=65.99 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=31.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
..+|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 59 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN 59 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4689999999999999999999999999998764
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0033 Score=71.98 Aligned_cols=44 Identities=23% Similarity=0.204 Sum_probs=39.6
Q ss_pred ccCccccccCCchhhHHHHHHhh-CCCcceEEEcccCCcCcccccCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEA-GNGFTCTTFEQADNIGGTWLYTE 784 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~-g~~~~v~v~E~~~~~GG~w~~~~ 784 (1129)
..+++|||+|.+|+++|..|.+. | .+|+|+|+++.+||.+....
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~~g--~~v~v~E~~~~~GG~~~~~~ 51 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLD--KRVLVLERRPHIGGNAYSEA 51 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSC--CCEEEECSSSSSSGGGCEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCC--CCEEEEeCCCCCCCeeeecc
Confidence 35789999999999999999999 8 99999999999999887543
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0042 Score=75.48 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=31.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcC----CCCceEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEP----GSGFTCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~----~~~~~v~v~E~~~~ 45 (1129)
..||+|||||.|||+||..|++. ++|.+|+|+||...
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~ 62 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASL 62 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCT
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCC
Confidence 36999999999999999999984 12689999999754
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0038 Score=72.79 Aligned_cols=42 Identities=19% Similarity=0.117 Sum_probs=38.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
..+++|||+|.+|+++|..|.+.| .+|+++|+++.+||.+..
T Consensus 11 ~~dvvVIGaG~~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~t 52 (453)
T 2bcg_G 11 DYDVIVLGTGITECILSGLLSVDG--KKVLHIDKQDHYGGEAAS 52 (453)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGCE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCCCccccc
Confidence 357899999999999999999999 999999999999998763
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0065 Score=74.05 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=30.7
Q ss_pred cceEEEEcCChHHHHHHHHhh---cCCCCceEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLT---EPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~---~~~~~~~v~v~E~~~~ 45 (1129)
..||+|||||+|||+||..|+ ++ .|.+|+|+||...
T Consensus 22 ~~DVvVIG~G~AGl~AAl~aa~~~~~-~G~~V~vlEK~~~ 60 (643)
T 1jnr_A 22 ETDILIIGGGFSGCGAAYEAAYWAKL-GGLKVTLVEKAAV 60 (643)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTT-TTCCEEEECSSCT
T ss_pred cCCEEEECcCHHHHHHHHHHhhhhhh-CCCeEEEEeCcCC
Confidence 369999999999999999999 41 3589999999764
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0038 Score=72.14 Aligned_cols=40 Identities=30% Similarity=0.430 Sum_probs=36.9
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
+++|||+|.+|+++|..|.+.| .+|+|+|+++.+||....
T Consensus 2 dVvVIGaGiaGLsaA~~La~~G--~~V~vlE~~~~~GG~~~~ 41 (421)
T 3nrn_A 2 RAVVVGAGLGGLLAGAFLARNG--HEIIVLEKSAMIGGRFTN 41 (421)
T ss_dssp EEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSSSCTTSSE
T ss_pred cEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCCCceeEE
Confidence 5789999999999999999999 999999999999997653
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0042 Score=70.60 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=39.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEH 785 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~ 785 (1129)
-+++|||+|.+|+++|..|.+.| ++|+|+|+++.+||.|.....
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~g--~~v~v~E~~~~~GG~~~~~~~ 47 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEKG--HQVHIIDQRDHIGGNSYDARD 47 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSSGGGCEEEC
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CcEEEEEecCCcCCccccccc
Confidence 36789999999999999999999 999999999999999875433
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0039 Score=69.82 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=37.3
Q ss_pred CccccccCCchhhHHHHHHh---hCCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTE---AGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~---~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
+++|||+|++|+++|..|.+ .| ++|+||||++.+||.|..
T Consensus 3 dV~IIGaG~aGl~~A~~L~~~~~~G--~~V~v~Ek~~~~gg~~~~ 45 (342)
T 3qj4_A 3 QVLIVGAGMTGSLCAALLRRQTSGP--LYLAVWDKADDSGGRMTT 45 (342)
T ss_dssp EEEEECCSHHHHHHHHHHHSCC-CC--EEEEEECSSSSSCGGGCE
T ss_pred cEEEECCcHHHHHHHHHHHhhccCC--ceEEEEECCCCCccceee
Confidence 68999999999999999999 88 999999999999998874
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0052 Score=72.28 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=40.4
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE 784 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~ 784 (1129)
..+++|||+|.+|+++|..|.+.|++.+|+|+|+++.+||.+....
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~ 49 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYR 49 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEEC
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEe
Confidence 4578999999999999999999997789999999999999765433
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0046 Score=71.50 Aligned_cols=39 Identities=33% Similarity=0.552 Sum_probs=36.4
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
+++|||+|.+|+++|..|.+.| .+|+|+|+++.+||...
T Consensus 2 dVvVIGaGiaGLsaA~~La~~G--~~V~vlE~~~~~GG~~~ 40 (425)
T 3ka7_A 2 KTVVIGAGLGGLLSAARLSKAG--HEVEVFERLPITGGRFT 40 (425)
T ss_dssp EEEEECCBHHHHHHHHHHHHTT--CEEEEECSSSSSBTTSS
T ss_pred cEEEECCCHHHHHHHHHHHhCC--CceEEEeCCCCCCCcee
Confidence 4789999999999999999999 99999999999999765
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0048 Score=72.60 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=37.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCc--ceEEEcccCCcCccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGF--TCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~--~v~v~E~~~~~GG~w~~ 782 (1129)
-+++|||+|.+||++|.+|.+.| . +|+|||+++.+||....
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G--~~~~V~vlEa~~~~GG~~~t 45 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAP--CPPKVVLVESSERLGGWIRS 45 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSS--SCCEEEEECSSSSSBTTCCE
T ss_pred ceEEEECCcHHHHHHHHHHHhCC--CCCcEEEEeCCCCCCCceEE
Confidence 36899999999999999999999 7 99999999999997653
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.011 Score=67.72 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCC
Q psy12350 868 AGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQS 903 (1129)
Q Consensus 868 ~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~ 903 (1129)
+..+|+|||||.+|+-+|..|++.|.+|+++++.+.
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~ 57 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE 57 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 446899999999999999999999999999998653
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0064 Score=70.29 Aligned_cols=44 Identities=30% Similarity=0.426 Sum_probs=38.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE 784 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~ 784 (1129)
.+++|||+|++||++|..|.+.|. .+|+|||+++.+||.+....
T Consensus 7 ~~v~IIGaG~aGl~aA~~L~~~g~-~~v~v~E~~~~~GG~~~t~~ 50 (424)
T 2b9w_A 7 SRIAIIGAGPAGLAAGMYLEQAGF-HDYTILERTDHVGGKCHSPN 50 (424)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-CCEEEECSSSCSSTTCCCCE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCC-CcEEEEECCCCCCCcccccC
Confidence 478999999999999999999873 68999999999999776443
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.011 Score=70.75 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=41.5
Q ss_pred CCCCCCCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 1 MVQDKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 1 m~~~~~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
||. .+...+||+|||+|..|-..|..|++ .|.+|.++||++++||.|.
T Consensus 1 m~~-~~~~~~D~~i~GtGl~~~~~a~~~~~--~g~~vl~id~~~~~gg~~~ 48 (650)
T 1vg0_A 1 MAD-NLPSDFDVIVIGTGLPESIIAAACSR--SGQRVLHVDSRSYYGGNWA 48 (650)
T ss_dssp --C-CCCSBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCGGGC
T ss_pred CCc-cCCCcCCEEEECCcHHHHHHHHHHHh--CCCEEEEEcCCCcccCccc
Confidence 555 34456899999999999999999999 6799999999999999988
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0056 Score=72.81 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=37.9
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
..+++|||+|.+||+||..|.+.| ..+|+|+|+++.+||.+..
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G-~~~V~VlEa~~riGGr~~t 50 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNG-IQDCLVLEARDRVGGRLQT 50 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTT-CCSEEEECSSSSSBTTCCE
T ss_pred CCcEEEECCCHHHHHHHHHHHhcC-CCCEEEEeCCCCCCCceee
Confidence 347899999999999999999987 3789999999999997653
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0058 Score=72.19 Aligned_cols=40 Identities=30% Similarity=0.457 Sum_probs=36.9
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
.+++|||+|.+||++|..|.+.| .+|+|||+++.+||.+.
T Consensus 12 ~~v~IIGaG~aGl~aA~~L~~~g--~~v~v~E~~~~~GG~~~ 51 (489)
T 2jae_A 12 HSVVVLGGGPAGLCSAFELQKAG--YKVTVLEARTRPGGRVW 51 (489)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSCTTCC
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CCEEEEeccCCCCCcee
Confidence 46899999999999999999999 99999999999999654
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0062 Score=68.74 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=37.1
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
+++|||+|++|+++|..|.+.| .+|+|+|+++.+||.+..
T Consensus 3 ~v~iiG~G~~Gl~~A~~l~~~g--~~v~v~E~~~~~GG~~~~ 42 (367)
T 1i8t_A 3 DYIIVGSGLFGAVCANELKKLN--KKVLVIEKRNHIGGNAYT 42 (367)
T ss_dssp EEEEECCSHHHHHHHHHHGGGT--CCEEEECSSSSSSGGGCE
T ss_pred CEEEECcCHHHHHHHHHHHhCC--CcEEEEecCCCCCcceEe
Confidence 5789999999999999999999 999999999999998764
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0062 Score=72.51 Aligned_cols=41 Identities=29% Similarity=0.532 Sum_probs=37.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
.+++|||+|.+||++|..|.+.| ++|+|+|+++.+||....
T Consensus 5 ~~vvIIGaG~aGL~aA~~L~~~G--~~V~vlE~~~~~GGr~~t 45 (520)
T 1s3e_A 5 CDVVVVGGGISGMAAAKLLHDSG--LNVVVLEARDRVGGRTYT 45 (520)
T ss_dssp CSEEEECCBHHHHHHHHHHHHTT--CCEEEECSSSSSBTTCCE
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCceee
Confidence 47899999999999999999999 999999999999997653
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0065 Score=70.95 Aligned_cols=41 Identities=29% Similarity=0.470 Sum_probs=37.7
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
.+++|||+|++||++|..|.+.| .+|+|+|+++.+||.+..
T Consensus 6 ~~v~iiG~G~~Gl~aA~~l~~~g--~~v~v~E~~~~~GG~~~~ 46 (453)
T 2yg5_A 6 RDVAIVGAGPSGLAAATALRKAG--LSVAVIEARDRVGGRTWT 46 (453)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTTCCE
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CcEEEEECCCCCCCceec
Confidence 47899999999999999999999 999999999999998753
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.011 Score=70.54 Aligned_cols=37 Identities=27% Similarity=0.473 Sum_probs=32.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
+.+|+||||||+||..+|.+|.+. .+++|+|+|+...
T Consensus 16 ~~yD~IIVGsG~aG~v~A~rLse~-~~~~VLvLEaG~~ 52 (526)
T 3t37_A 16 PNCDIVIVGGGSAGSLLAARLSED-PDSRVLLIEAGEE 52 (526)
T ss_dssp -CEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSBC
T ss_pred CCeeEEEECccHHHHHHHHHHHhC-CCCeEEEEcCCCC
Confidence 468999999999999999999973 5789999999653
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.017 Score=68.92 Aligned_cols=32 Identities=19% Similarity=0.521 Sum_probs=30.1
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
-.|+|||||.+|+++|..+++.|.+|.++++.
T Consensus 29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~ 60 (651)
T 3ces_A 29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHN 60 (651)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEECChHHHHHHHHHHHhCCCCEEEEeec
Confidence 37999999999999999999999999999875
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.012 Score=70.29 Aligned_cols=36 Identities=28% Similarity=0.514 Sum_probs=32.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
..+||+|||||++|+++|.+|.+ .+.+|+|+|+...
T Consensus 6 ~~~D~iIvG~G~aG~~~A~~L~~--~g~~VlvlE~g~~ 41 (546)
T 1kdg_A 6 TPYDYIIVGAGPGGIIAADRLSE--AGKKVLLLERGGP 41 (546)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCC
T ss_pred CceeEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCCC
Confidence 35899999999999999999999 5799999999764
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0066 Score=71.18 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=37.8
Q ss_pred cCccccccCCchhhHHHHHHhhC----CCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAG----NGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g----~~~~v~v~E~~~~~GG~w~ 781 (1129)
.+++|||+|.+||++|..|.+.| +..+|+|+|+++.+||...
T Consensus 6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~ 51 (470)
T 3i6d_A 6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQ 51 (470)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCC
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEE
Confidence 47899999999999999999998 6689999999999998654
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.0052 Score=72.73 Aligned_cols=40 Identities=45% Similarity=0.497 Sum_probs=36.9
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
.+++|||+|.+||++|..|.+.| ++|+|+|+++.+||...
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g--~~v~v~E~~~~~GGr~~ 79 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAG--FKTLLLEARDRIGGRSW 79 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTT--CCEEEECSSSBSBTTCC
T ss_pred CCEEEECCcHHHHHHHHHHHHCC--CCEEEEeCCCCCCCcce
Confidence 46899999999999999999999 99999999999999654
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=94.94 E-value=0.0082 Score=71.17 Aligned_cols=42 Identities=29% Similarity=0.337 Sum_probs=38.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT 783 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~ 783 (1129)
.+++|||+|.+||++|..|.+.| ++|+|+|+++.+||.+...
T Consensus 14 ~~v~iiG~G~~Gl~aA~~l~~~g--~~v~v~E~~~~~GG~~~~~ 55 (504)
T 1sez_A 14 KRVAVIGAGVSGLAAAYKLKIHG--LNVTVFEAEGKAGGKLRSV 55 (504)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTS--CEEEEECSSSSSCSSCCEE
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CcEEEEEeCCCCCCceeee
Confidence 46899999999999999999999 9999999999999977643
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.021 Score=67.90 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=30.0
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
-.|+|||||.+|+++|..+++.|.+|.++++.
T Consensus 28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~ 59 (637)
T 2zxi_A 28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLN 59 (637)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEec
Confidence 36999999999999999999999999999876
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.0091 Score=70.21 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=37.5
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
..+++|||+|.+|+++|..|.+.| .+|+|+|+++.+||....
T Consensus 16 ~~~v~iiG~G~~Gl~aa~~l~~~g--~~v~v~E~~~~~GGr~~t 57 (478)
T 2ivd_A 16 GMNVAVVGGGISGLAVAHHLRSRG--TDAVLLESSARLGGAVGT 57 (478)
T ss_dssp -CCEEEECCBHHHHHHHHHHHTTT--CCEEEECSSSSSBTTCCE
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CCEEEEEcCCCCCceeee
Confidence 347899999999999999999999 999999999999996553
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.01 Score=67.83 Aligned_cols=41 Identities=29% Similarity=0.471 Sum_probs=37.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
..+++|||+|++|+.+|..|.+.| .+|+|+|+++.+|+.|.
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~~G--~~V~vlEk~~~~g~~~~ 44 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKLG--KSVTVFDNGKKIGRKIL 44 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHH
T ss_pred CCCEEEECCcHHHHHHHHHHHhCC--CCEEEEeCCCCCchhcE
Confidence 458899999999999999999999 99999999998887665
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.0096 Score=68.30 Aligned_cols=41 Identities=12% Similarity=0.127 Sum_probs=37.2
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
..+++|||+|++|+.+|..|.+.| .+|+|+|+++.+|+.+.
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~G--~~V~llEk~~~~g~~~~ 67 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKRG--RRVLVIDHARAPGEKIR 67 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCceeE
Confidence 458999999999999999999999 99999999999988764
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.02 Score=68.42 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=32.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
..+|++|||||.||+++|.+|.+. .+.+|+|+|+...
T Consensus 5 ~~yDyIVVGgG~AG~v~A~rLse~-~~~~VLllEaG~~ 41 (577)
T 3q9t_A 5 SHFDFVIVGGGTAGNTVAGRLAEN-PNVTVLIVEAGIG 41 (577)
T ss_dssp CEEEEEEESCSHHHHHHHHHHTTS-TTSCEEEECSSCS
T ss_pred CcccEEEECCcHHHHHHHHHHHhC-CCCcEEEEecCCC
Confidence 458999999999999999999984 2479999999764
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.016 Score=69.00 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=31.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
..+|++|||||+||+++|.+|.+ + .+|+|+|+...
T Consensus 25 ~~yD~IIVGsG~AG~v~A~rLse-g--~~VlvLEaG~~ 59 (536)
T 1ju2_A 25 GSYDYVIVGGGTSGCPLAATLSE-K--YKVLVLERGSL 59 (536)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTT-T--SCEEEECSSBC
T ss_pred CcccEEEECccHHHHHHHHHHhc-C--CcEEEEecCCC
Confidence 34799999999999999999998 4 89999999764
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.013 Score=68.89 Aligned_cols=43 Identities=33% Similarity=0.326 Sum_probs=38.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
..+++|||+|++|+++|..|.+.| ..+|+|||+++.+||.|..
T Consensus 9 ~~~v~iiG~G~~Gl~~A~~l~~~g-~~~v~v~E~~~~~GG~~~~ 51 (484)
T 4dsg_A 9 TPKIVIIGAGPTGLGAAVRLTELG-YKNWHLYECNDTPGGLSRS 51 (484)
T ss_dssp SCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESSSSSSGGGCE
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC-CCCEEEEeCCCCCCCeeee
Confidence 357899999999999999999987 2589999999999999985
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.021 Score=68.10 Aligned_cols=36 Identities=33% Similarity=0.486 Sum_probs=32.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..+|++|||||.||+++|.+|.+. ++.+|+|+|+..
T Consensus 18 ~~yDyIIVGgG~AG~vlA~RLse~-~~~~VLlLEaG~ 53 (583)
T 3qvp_A 18 RTVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESGS 53 (583)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTS-TTCCEEEECSSC
T ss_pred CCccEEEECCcHHHHHHHHHHHhC-CCCcEEEEecCC
Confidence 458999999999999999999874 578999999976
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.014 Score=63.89 Aligned_cols=40 Identities=25% Similarity=0.471 Sum_probs=35.7
Q ss_pred cCccccccCCchhhHHHHHHhh--CCCcceEEEcccCCcC-cccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEA--GNGFTCTTFEQADNIG-GTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~--g~~~~v~v~E~~~~~G-G~w~ 781 (1129)
.+++|||+|++|+++|..|.+. | ++|+|+|+++..| |+|.
T Consensus 66 ~dv~IiG~G~aGl~aA~~la~~~~g--~~V~v~e~~~~~ggg~~~ 108 (326)
T 2gjc_A 66 SDVIIVGAGSSGLSAAYVIAKNRPD--LKVCIIESSVAPGGGSWL 108 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTT--SCEEEECSSSSCCTTTTC
T ss_pred CCEEEECccHHHHHHHHHHHhcCCC--CeEEEEecCccccccccc
Confidence 4789999999999999999998 7 9999999999887 4554
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.022 Score=67.24 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=33.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.++|+|||||++|+++|..|.+ .+.+|+|+|+....+
T Consensus 5 ~~d~~iiG~G~~g~~~a~~l~~--~~~~v~~~e~~~~~~ 41 (504)
T 1n4w_A 5 YVPAVVIGTGYGAAVSALRLGE--AGVQTLMLEMGQLWN 41 (504)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCCCCC
Confidence 4899999999999999999999 679999999977543
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.012 Score=69.52 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=37.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
.+++|||+|.+|+++|..|.+.| .+|+|+|+++.+||.+.
T Consensus 34 ~~v~IiGaG~~Gl~aA~~l~~~g--~~v~vlE~~~~~gg~~~ 73 (498)
T 2iid_A 34 KHVVIVGAGMAGLSAAYVLAGAG--HQVTVLEASERPGGRVR 73 (498)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHT--CEEEEECSSSSSBTTCC
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEECCCCCCCcee
Confidence 46799999999999999999999 99999999999999764
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.014 Score=68.41 Aligned_cols=45 Identities=38% Similarity=0.482 Sum_probs=39.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCc-ceEEEcccCCcCcccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGF-TCTTFEQADNIGGTWLYTEHI 786 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~-~v~v~E~~~~~GG~w~~~~~~ 786 (1129)
.+++|||+|++|+++|..|.+.| . +|+|+|+++.+||.|......
T Consensus 5 ~~~~iiG~G~~g~~~a~~l~~~g--~~~v~~~e~~~~~gg~~~~~~~~ 50 (472)
T 1b37_A 5 PRVIVVGAGMSGISAAKRLSEAG--ITDLLILEATDHIGGRMHKTNFA 50 (472)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTT--CCCEEEECSSSSSBTTSCEEEET
T ss_pred CeEEEECCCHHHHHHHHHHHhcC--CCceEEEeCCCCCCCceeecccC
Confidence 46789999999999999999999 8 899999999999988755443
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=94.23 E-value=0.018 Score=66.55 Aligned_cols=41 Identities=15% Similarity=0.069 Sum_probs=38.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
.+++|||+|.+|+++|..|.+.| .+|+++|+++.+||.|..
T Consensus 7 ~~v~iiG~G~~gl~~a~~l~~~g--~~v~~~e~~~~~gg~~~s 47 (433)
T 1d5t_A 7 YDVIVLGTGLTECILSGIMSVNG--KKVLHMDRNPYYGGESSS 47 (433)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTTSCE
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCccccccc
Confidence 47899999999999999999999 999999999999998764
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.036 Score=65.37 Aligned_cols=36 Identities=33% Similarity=0.456 Sum_probs=32.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
..++++|||||++|+.+|..|.+ .+.+|+|+|++..
T Consensus 10 ~~~d~~iiG~G~~g~~~a~~l~~--~~~~v~~~e~~~~ 45 (507)
T 1coy_A 10 DRVPALVIGSGYGGAVAALRLTQ--AGIPTQIVEMGRS 45 (507)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHH--CCCcEEEEECCCC
Confidence 45899999999999999999999 6799999999764
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.02 Score=64.53 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=32.9
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+||++.+|
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G--~~V~vlE~~~~~~ 40 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGG--HEVLVAEAAEGIG 40 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCC
Confidence 47899999999999999999999 9999999987655
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.024 Score=62.30 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=35.5
Q ss_pred ccCccccccCCchhhHHHHHHhh--CCCcceEEEcccCCcCc-cc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEA--GNGFTCTTFEQADNIGG-TW 780 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~--g~~~~v~v~E~~~~~GG-~w 780 (1129)
..+++|||+|++|+++|..|.+. | .+|+|+|++..+|| .|
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G--~~V~LiEk~~~~GGg~~ 121 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPD--LRITIVEAGVAPGGGAW 121 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTT--SCEEEEESSSSCCTTTT
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCC--CEEEEEeCCCccCCccc
Confidence 45899999999999999999998 7 99999999988875 45
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.033 Score=66.28 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=32.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
.+|++|||||+||+++|.+|.+. ++.+|+|+|+....
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~-~~~~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTED-PDVSVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTS-TTCCEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhC-cCCcEEEEecCCcc
Confidence 37999999999999999999973 57999999997654
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=93.66 E-value=0.022 Score=69.67 Aligned_cols=42 Identities=29% Similarity=0.417 Sum_probs=38.1
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
..+++|||+|++|+++|..|.+.| ++|+|||+++.+||.+..
T Consensus 107 ~~~v~viG~G~~gl~~a~~l~~~g--~~v~~~e~~~~~gg~~~~ 148 (662)
T 2z3y_A 107 TGKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARDRVGGRVAT 148 (662)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSSSSBTTCCE
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCcccc
Confidence 346799999999999999999999 999999999999997653
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=93.64 E-value=0.023 Score=70.72 Aligned_cols=40 Identities=30% Similarity=0.454 Sum_probs=37.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
.+++|||+|++||++|..|.+.| ++|+|||+++.+||.+.
T Consensus 279 ~~v~viG~G~aGl~~A~~l~~~g--~~v~v~E~~~~~GG~~~ 318 (852)
T 2xag_A 279 GKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARDRVGGRVA 318 (852)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSCTTCC
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CcEEEEEecCcCCCcee
Confidence 46799999999999999999999 99999999999999765
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.027 Score=65.09 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=38.0
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
..+++|||+|.+|+++|..|.+.| .+|+++|+++.+||.+.
T Consensus 20 ~~dv~iiG~G~~g~~~a~~l~~~g--~~v~~~e~~~~~Gg~~~ 60 (475)
T 3p1w_A 20 HYDVIILGTGLKECILSGLLSHYG--KKILVLDRNPYYGGETA 60 (475)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeccCCCCCCcc
Confidence 357899999999999999999999 99999999999999765
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.026 Score=66.87 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=37.5
Q ss_pred eeccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc
Q psy12350 737 IKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 737 ~~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w 780 (1129)
....+++|||+|.+|+++|..|.+.| .+|+|+||.+.+||.-
T Consensus 39 ~~~~DVvVVGaG~AGl~AA~~aa~~G--~~V~vlEk~~~~GG~s 80 (510)
T 4at0_A 39 DYEADVVVAGYGIAGVAASIEAARAG--ADVLVLERTSGWGGAT 80 (510)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTTG
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCCCCcc
Confidence 34568899999999999999999999 9999999999888753
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.058 Score=64.25 Aligned_cols=38 Identities=24% Similarity=0.407 Sum_probs=33.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..++++|||||++|+++|.+|.+. ++.+|+|+|++...
T Consensus 12 ~~~d~~ivG~G~~G~~~a~~l~~~-~~~~v~~~e~g~~~ 49 (546)
T 2jbv_A 12 REFDYIVVGGGSAGAAVAARLSED-PAVSVALVEAGPDD 49 (546)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSCCC
T ss_pred CcCCEEEECcCHHHHHHHHHHHhC-CCCCEEEEecCCcC
Confidence 358999999999999999999984 27899999997653
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.033 Score=66.93 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=37.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
..+|+|||+|++|+++|..|.+.| .+|+|+||.+.+||...
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G--~~V~vlEk~~~~gg~s~ 166 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSG--AKVILIEKEPVIGGNAK 166 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTTGG
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCCCCchh
Confidence 348899999999999999999999 99999999999988655
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.036 Score=64.20 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=34.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCc-ceEEEcccCCcCcc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGF-TCTTFEQADNIGGT 779 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~-~v~v~E~~~~~GG~ 779 (1129)
.+++|||+|.+|+++|..|.+.| . +|+|+|+++..||.
T Consensus 7 ~dVvIIGgG~aGlsaA~~La~~G--~~~V~vlE~~~~~~~~ 45 (438)
T 3dje_A 7 SSLLIVGAGTWGTSTALHLARRG--YTNVTVLDPYPVPSAI 45 (438)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSCSSCTT
T ss_pred CCEEEECCCHHHHHHHHHHHHcC--CCcEEEEeCCCCCCCC
Confidence 57899999999999999999999 8 99999998866553
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=92.94 E-value=0.036 Score=64.39 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=35.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w 780 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+||.+.+|+..
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~~G--~~V~llEk~~~~g~~~ 65 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAEEG--ANVLLLDKGNKLGRKL 65 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHH
T ss_pred CCEEEECCcHHHHHHHHHHHHCC--CCEEEEECCCCCCcee
Confidence 58899999999999999999999 9999999998887644
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=0.036 Score=62.74 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=33.0
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
..-+++|||+|.+|+++|.+|. +| .+|+|+|+++.+|
T Consensus 8 ~~~dv~IIGaGi~Gls~A~~La-~G--~~V~vlE~~~~~g 44 (381)
T 3nyc_A 8 IEADYLVIGAGIAGASTGYWLS-AH--GRVVVLEREAQPG 44 (381)
T ss_dssp EECSEEEECCSHHHHHHHHHHT-TT--SCEEEECSSSSTT
T ss_pred CcCCEEEECCcHHHHHHHHHHh-CC--CCEEEEECCCCcc
Confidence 3568899999999999999999 58 9999999987775
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=0.041 Score=66.10 Aligned_cols=39 Identities=28% Similarity=0.478 Sum_probs=35.4
Q ss_pred ccCccccccCCchhhHHHHHHhh------CCCcceEEEcccCCcCcc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEA------GNGFTCTTFEQADNIGGT 779 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~------g~~~~v~v~E~~~~~GG~ 779 (1129)
..+++|||+|++|+++|..|.+. | ++|+|+||.+.+|+.
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G--~~V~vlEk~~~~g~~ 79 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKD--LRVCLVEKAAHIGAH 79 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCC--CCEEEECSSSSTTTT
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCC--CcEEEEeCCCCCCCc
Confidence 45899999999999999999998 7 999999999888764
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=92.82 E-value=0.041 Score=63.07 Aligned_cols=36 Identities=28% Similarity=0.437 Sum_probs=32.9
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcc-eEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFT-CTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~-v~v~E~~~~~G 777 (1129)
.+++|||+|++|+++|..|.+.| ++ |+|+||.+.++
T Consensus 5 ~dVvIVGaG~aGl~~A~~L~~~G--~~~v~v~E~~~~~~ 41 (410)
T 3c96_A 5 IDILIAGAGIGGLSCALALHQAG--IGKVTLLESSSEIR 41 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESSSSCC
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CCeEEEEECCCCcc
Confidence 47899999999999999999999 99 99999987654
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.04 Score=62.46 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=31.4
Q ss_pred CccccccCCchhhHHHHHHhh--CCCcceEEEcccCCc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEA--GNGFTCTTFEQADNI 776 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~--g~~~~v~v~E~~~~~ 776 (1129)
+++|||+|++|+++|..|.+. | ++|+|+||++.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~~~G--~~V~v~E~~~~~ 37 (381)
T 3c4a_A 2 KILVIGAGPAGLVFASQLKQARPL--WAIDIVEKNDEQ 37 (381)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTT--SEEEEECSSCTT
T ss_pred eEEEECCCHHHHHHHHHHHhcCCC--CCEEEEECCCCC
Confidence 478999999999999999999 7 999999998765
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=92.62 E-value=0.08 Score=63.56 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=32.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
..++++|||||++|+++|.+|.+. .+.+|+|+|++..
T Consensus 23 ~~~d~iivG~G~~g~~~a~~l~~~-~~~~v~~~e~g~~ 59 (587)
T 1gpe_A 23 KTYDYIIAGGGLTGLTVAAKLTEN-PKIKVLVIEKGFY 59 (587)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTS-TTCCEEEEESSCC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEecCCc
Confidence 358999999999999999999983 4689999999764
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=0.043 Score=62.61 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=31.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+||.+..
T Consensus 5 ~DVvIIGaG~~Gl~~A~~La~~G--~~V~vlE~~~~~ 39 (397)
T 2oln_A 5 YDVVVVGGGPVGLATAWQVAERG--HRVLVLERHTFF 39 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCTT
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCC
Confidence 47899999999999999999999 999999997643
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=92.59 E-value=0.042 Score=65.96 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=36.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
..+++|||+|++|+++|..|.+.| .+|+|+||.+.+||...
T Consensus 121 ~~DVvVVG~G~aGl~aA~~la~~G--~~V~vlEk~~~~gg~s~ 161 (566)
T 1qo8_A 121 TTQVLVVGAGSAGFNASLAAKKAG--ANVILVDKAPFSGGNSM 161 (566)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSSCTTGG
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCCCCccc
Confidence 347899999999999999999999 99999999998887543
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=92.47 E-value=0.044 Score=62.03 Aligned_cols=38 Identities=18% Similarity=0.089 Sum_probs=33.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
..+++|||+|++|+++|..|.+.| .+|+|+|+....+|
T Consensus 17 ~~dvvIIGgG~~Gl~~A~~La~~G--~~V~llE~~~~~~g 54 (382)
T 1ryi_A 17 HYEAVVIGGGIIGSAIAYYLAKEN--KNTALFESGTMGGR 54 (382)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSTTTT
T ss_pred CCCEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCCCCcc
Confidence 457899999999999999999999 99999999764443
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.47 E-value=0.046 Score=61.67 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=32.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.+++|||+|.+|+++|..|.+.| .+|+|+|+.+..+
T Consensus 3 ~dvvIIG~Gi~Gl~~A~~La~~G--~~V~vle~~~~~~ 38 (372)
T 2uzz_A 3 YDLIIIGSGSVGAAAGYYATRAG--LNVLMTDAHMPPH 38 (372)
T ss_dssp EEEEESCTTHHHHHHHHHHHHTT--CCEEEECSSCSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCC
Confidence 46899999999999999999999 9999999977543
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=92.35 E-value=0.099 Score=60.55 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=31.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..++|.|||.|.+|+++|+.|++ .|++|+++|++.
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~--~G~~V~~~D~~~ 42 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAK--LGAIVTVNDGKP 42 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHH--TTCEEEEEESSC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHh--CCCEEEEEeCCc
Confidence 45899999999999999999999 679999999854
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=0.12 Score=50.01 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=31.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..++|+|||+|.-|...|+.|++ .|++|+++|++.
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~--~g~~V~vid~~~ 52 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASS--SGHSVVVVDKNE 52 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCG
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence 35799999999999999999999 568999999854
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=92.22 E-value=0.053 Score=62.31 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=31.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD 774 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~ 774 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+|+++
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G--~~V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSG--FKVKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--CCEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCC
Confidence 47899999999999999999999 9999999986
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=92.16 E-value=0.054 Score=61.63 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=31.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADN 775 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~ 775 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+||.+.
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~ 36 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQTP 36 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHT--CCEEEECSSCH
T ss_pred ccEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCC
Confidence 47899999999999999999999 99999999764
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=0.054 Score=61.43 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=32.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.+++|||+|.+|+++|..|.+.| .+|+|+|+.+..+
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~~G--~~V~vie~~~~~~ 39 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAKQG--VKTLLVDAFDPPH 39 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCSSC
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCC
Confidence 47899999999999999999999 9999999976443
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=92.04 E-value=0.054 Score=66.65 Aligned_cols=36 Identities=11% Similarity=-0.037 Sum_probs=33.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.+++|||+|.+|+++|..|.+.| .+|+|+|+++.+|
T Consensus 265 ~DVvIIGgGiaGlsaA~~La~~G--~~V~vlEk~~~~g 300 (689)
T 3pvc_A 265 DDIAIIGGGIVSALTALALQRRG--AVVTLYCADAQPA 300 (689)
T ss_dssp SSEEEECCSHHHHHHHHHHHTTT--CCEEEEESSSSTT
T ss_pred CCEEEECCcHHHHHHHHHHHHCC--CcEEEEeCCCccc
Confidence 57899999999999999999999 9999999987665
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=91.97 E-value=0.13 Score=48.47 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=29.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|.-|...|+.|.+ .+++|+++|++.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~--~g~~v~~~d~~~ 37 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSE--KGHDIVLIDIDK 37 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence 3689999999999999999999 568999999843
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.052 Score=67.06 Aligned_cols=39 Identities=36% Similarity=0.576 Sum_probs=36.0
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGT 779 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~ 779 (1129)
..+++|||+|++|+++|..|.+.| ++|+|+|+++.+||.
T Consensus 336 ~~~v~viG~G~~Gl~aA~~l~~~g--~~v~v~E~~~~~ggr 374 (776)
T 4gut_A 336 NKSVIIIGAGPAGLAAARQLHNFG--IKVTVLEAKDRIGGR 374 (776)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSCTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CcEEEEecccceece
Confidence 357899999999999999999999 999999999999993
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=91.89 E-value=0.061 Score=63.33 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=33.5
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
..-+|+|||+|++|+++|..|.+.| ++|+|+||.+..+
T Consensus 10 ~~~dVlIVGaGpaGl~~A~~La~~G--~~v~vlE~~~~~~ 47 (500)
T 2qa1_A 10 SDAAVIVVGAGPAGMMLAGELRLAG--VEVVVLERLVERT 47 (500)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCCC-C
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCCC
Confidence 4568899999999999999999999 9999999987653
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=91.84 E-value=0.063 Score=60.77 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=32.2
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
..+++|||+|.+|+++|..|.+.| .+|+|+|++. +|
T Consensus 5 ~~dVvIIGgGi~Gl~~A~~La~~G--~~V~lle~~~-~~ 40 (382)
T 1y56_B 5 KSEIVVIGGGIVGVTIAHELAKRG--EEVTVIEKRF-IG 40 (382)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS-TT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCC-CC
Confidence 357899999999999999999999 9999999974 44
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=91.74 E-value=0.055 Score=66.45 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=33.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.+++|||+|.+|+++|..|.+.| .+|+|+|+++.+|
T Consensus 273 ~DVvIIGgGiaGlsaA~~La~~G--~~V~vlEk~~~~g 308 (676)
T 3ps9_A 273 REAAIIGGGIASALLSLALLRRG--WQVTLYCADEAPA 308 (676)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCccc
Confidence 57899999999999999999999 9999999987776
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=91.68 E-value=0.054 Score=63.02 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=32.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
..+++|||+|++|+++|..|.+.| ++|+|+|+.+..
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~~G--~~V~vlE~~~~~ 41 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSRRG--LKILLVDSKPWN 41 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSSSS--CCEEEECSSCGG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCC
Confidence 358999999999999999999999 999999998753
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=91.67 E-value=0.17 Score=47.79 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=30.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+.+|+|||+|.-|...|+.|.+ .|++|+++|++.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~--~g~~v~vid~~~ 40 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLA--SDIPLVVIETSR 40 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEESCH
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCH
Confidence 4689999999999999999999 669999999954
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=91.61 E-value=0.049 Score=62.82 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=31.1
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD 774 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~ 774 (1129)
..+++|||+|++|+++|..|.+.| ++|+|+|+++
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~G--~~V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQHD--VDVTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHTT--CEEEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCC--CeEEEEcCCC
Confidence 357899999999999999999999 9999999975
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=91.58 E-value=0.063 Score=63.16 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=33.1
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.-+|+|||+|++|+++|..|.+.| ++|+|+||.+..+
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La~~G--~~v~vlE~~~~~~ 48 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELRLGG--VDVMVLEQLPQRT 48 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESCSSCC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCC
Confidence 347899999999999999999999 9999999987653
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=91.58 E-value=0.069 Score=63.76 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=33.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.+|+|||+|++|+++|..|.+.| .+|+|+||.+..+
T Consensus 27 ~dVlIVGaGpaGl~~A~~La~~G--~~V~vlEr~~~~~ 62 (549)
T 2r0c_A 27 TDVLILGGGPVGMALALDLAHRQ--VGHLVVEQTDGTI 62 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCSCC
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCCC
Confidence 47899999999999999999999 9999999988664
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.16 Score=46.01 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=30.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCC-ceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSG-FTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~-~~v~v~E~~~ 44 (1129)
.++|+|+|+|..|...++.|.+ .| ++|++++++.
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~--~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKT--SSNYSVTVADHDL 39 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--CSSEEEEEEESCH
T ss_pred cCeEEEECCCHHHHHHHHHHHh--CCCceEEEEeCCH
Confidence 3689999999999999999999 56 8999999853
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=91.21 E-value=0.19 Score=48.50 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=32.3
Q ss_pred CCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 862 RTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 862 ~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
.-++...+++|+|+|+|..|.-+|..|.+.|.+|+++.+.
T Consensus 12 ~~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 12 HMSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKN 51 (155)
T ss_dssp -----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred hhhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 3345567899999999999999999999999999999764
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=91.14 E-value=0.077 Score=64.11 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=36.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w 780 (1129)
..+++|||+|++|+.+|..|.+.| ++|+|+|+.+..||.+
T Consensus 46 ~~dvvIIG~G~aGl~aA~~l~~~G--~~V~liE~~~~~gg~~ 85 (623)
T 3pl8_A 46 KYDVVIVGSGPIGCTYARELVGAG--YKVAMFDIGEIDSGLK 85 (623)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCCSSSS
T ss_pred cCCEEEECCcHHHHHHHHHHHhCC--CcEEEEeccCCCCCcc
Confidence 357899999999999999999999 9999999999888755
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=91.07 E-value=0.083 Score=62.47 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=31.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD 774 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~ 774 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+|+.+
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G--~~V~liE~~~ 40 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRG--HRVLLLEREA 40 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--CCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHhCC--CCEEEEccCC
Confidence 57899999999999999999999 9999999986
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=0.063 Score=59.99 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=31.3
Q ss_pred CccccccCCchhhHHHHHHhhC----CCcceEEEcccCC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAG----NGFTCTTFEQADN 775 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g----~~~~v~v~E~~~~ 775 (1129)
+++|||+|.+|+++|..|.+.| |..+|+|+|++..
T Consensus 2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~ 40 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT 40 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence 5789999999999999999997 5589999999763
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=91.05 E-value=0.074 Score=63.37 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=32.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+||.+..+
T Consensus 6 ~dVlIVGaG~aGl~~A~~La~~G--~~v~viEr~~~~~ 41 (535)
T 3ihg_A 6 VDVLVVGAGLGGLSTAMFLARQG--VRVLVVERRPGLS 41 (535)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--CCEEEECSSSSCC
T ss_pred CcEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCCC
Confidence 57899999999999999999999 9999999987543
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=91.04 E-value=0.078 Score=63.34 Aligned_cols=40 Identities=20% Similarity=0.067 Sum_probs=35.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
.+++|||+|++|+.+|..|.+.| .+|+|+|+++-.+|+-.
T Consensus 19 ~DVvVIGgGi~Gl~~A~~La~~G--~~V~LlEk~d~~~GtS~ 58 (561)
T 3da1_A 19 LDLLVIGGGITGAGIALDAQVRG--IQTGLVEMNDFASGTSS 58 (561)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--CCEEEEESSSTTCSGGG
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CcEEEEECCCCCCCccc
Confidence 57899999999999999999999 99999999876666543
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=91.03 E-value=0.093 Score=61.85 Aligned_cols=39 Identities=21% Similarity=0.137 Sum_probs=33.8
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGT 779 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~ 779 (1129)
..+++|||+|.+|+++|..|.+.| .+|+|+|+++-.+|+
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~~G--~~V~llE~~~~~~gt 41 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAGRG--LSVLMLEAQDLACAT 41 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSTTCSG
T ss_pred cCCEEEECcCHHHHHHHHHHHhCC--CCEEEEECCCCCCCc
Confidence 358899999999999999999999 999999997644443
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=91.00 E-value=0.16 Score=52.07 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=32.7
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEec
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGS 900 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~ 900 (1129)
++.||+|+|||||.+|.-.+..|.+.|++|+++..
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap 62 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAP 62 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence 56899999999999999999999999999999965
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=90.93 E-value=0.2 Score=48.23 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=30.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT 43 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~ 43 (1129)
.++|+|+|+|.-|...|+.|.+ .|++|+++|++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~--~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQ--RGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCCEEEEECC
Confidence 4689999999999999999999 56999999995
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=90.82 E-value=0.089 Score=60.13 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=31.2
Q ss_pred cCccccccCCchhhHHHHHHhh--CCCcceEEEcccCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEA--GNGFTCTTFEQADN 775 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~--g~~~~v~v~E~~~~ 775 (1129)
.+++|||+|.+|+++|..|.+. | .+|+|+|+...
T Consensus 37 ~dVvIIGaGi~Gls~A~~La~~~pG--~~V~vlE~~~~ 72 (405)
T 3c4n_A 37 FDIVVIGAGRMGAACAFYLRQLAPG--RSLLLVEEGGL 72 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTT--SCEEEECSSCS
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCC--CeEEEEeCCCC
Confidence 4789999999999999999999 8 99999999753
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=90.80 E-value=0.093 Score=62.75 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=32.4
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
..+|+|||+|++|+++|..|.+.| ++|+||||.+..+
T Consensus 49 ~~DVvIVGaG~aGL~~A~~La~~G--~~V~VlEr~~~~~ 85 (570)
T 3fmw_A 49 TTDVVVVGGGPVGLMLAGELRAGG--VGALVLEKLVEPV 85 (570)
T ss_dssp --CEEEECCSHHHHHHHHHHHHTT--CCEEEEBSCSSCC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEcCCCCCC
Confidence 358999999999999999999999 9999999987653
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=90.75 E-value=0.09 Score=63.06 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=32.6
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADN 775 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~ 775 (1129)
...+++|||+|++|+++|..|.+.| ++|+|+|+.+.
T Consensus 22 ~~~DVvIVGgG~AGl~aA~~Lar~G--~~V~LiEr~~~ 57 (591)
T 3i3l_A 22 TRSKVAIIGGGPAGSVAGLTLHKLG--HDVTIYERSAF 57 (591)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHcCC--CCEEEEcCCCC
Confidence 3468999999999999999999999 99999999753
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=90.45 E-value=0.096 Score=58.78 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=31.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD 774 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~ 774 (1129)
..+++|||+|.+|+++|..|.+.| .+|+|+|++.
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~G--~~V~vle~~~ 39 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARKG--YSVHILARDL 39 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CEEEEEeccC
Confidence 357899999999999999999999 9999999976
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=90.39 E-value=0.19 Score=53.11 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEec
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGS 900 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~ 900 (1129)
+++||+|+|||+|.+|.-.+..|.+.|++|+++..
T Consensus 10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap 44 (274)
T 1kyq_A 10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP 44 (274)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred EcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcC
Confidence 46799999999999999999999999999999965
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=90.34 E-value=0.21 Score=47.24 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=30.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+|+|+|.-|...|+.|.+ .|++|+++|+++
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~--~g~~V~~id~~~ 39 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTA--AGKKVLAVDKSK 39 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCeEEEEECCH
Confidence 689999999999999999999 569999999854
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=90.25 E-value=0.11 Score=60.61 Aligned_cols=36 Identities=28% Similarity=0.272 Sum_probs=32.0
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGT 779 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~ 779 (1129)
+++|||+|++|+++|..|.+.| .+|+|+||. ..||.
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G--~~V~viek~-~~~g~ 36 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAG--KKVTLISKR-IDGGS 36 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT--CCEEEECSS-TTCSS
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEeCC-CCCch
Confidence 5789999999999999999999 999999998 55553
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.24 E-value=0.23 Score=55.51 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=31.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
...+|+|||+|+.|+.+|+.|+. .|.+|+++|++.
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~--lGa~V~v~D~~~ 223 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARR--LGAVVSATDVRP 223 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSST
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEcCCH
Confidence 35799999999999999999999 668999999865
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=90.13 E-value=0.11 Score=62.15 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=36.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+|+.+.+||...
T Consensus 127 ~~v~viG~G~aG~~aa~~~~~~g--~~v~~~e~~~~~~~~~~ 166 (572)
T 1d4d_A 127 TDVVIIGSGGAGLAAAVSARDAG--AKVILLEKEPIPGGNTK 166 (572)
T ss_dssp CSEEEECCSHHHHHHHHHHHSSS--CCEEEECSSSSSCTTGG
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCcchh
Confidence 47899999999999999999999 99999999998888654
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=90.02 E-value=0.096 Score=62.88 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=33.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
..+++|||+|.+|+++|..|.+.| .+|+|+||....|
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~G--~~V~vlEK~~~~~ 43 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQSG--QTCALLSKVFPTR 43 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCGGG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCC
Confidence 357899999999999999999999 9999999987664
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=89.56 E-value=0.17 Score=58.27 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=30.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||.|.+|+++|+.|++ .|++|+++|.+.
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~--~G~~v~~~D~~~ 38 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLA--RGVTPRVMDTRM 38 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHT--TTCCCEEEESSS
T ss_pred CCEEEEEeecHHHHHHHHHHHh--CCCEEEEEECCC
Confidence 4789999999999999999999 679999999865
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=89.55 E-value=0.12 Score=61.39 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=32.8
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
..+++|||+|.+|+++|..|.+ | .+|+|+||.+..||
T Consensus 8 ~~DVvVVG~G~AGl~aAl~la~-G--~~V~vlEk~~~~~g 44 (540)
T 1chu_A 8 SCDVLIIGSGAAGLSLALRLAD-Q--HQVIVLSKGPVTEG 44 (540)
T ss_dssp ECSEEEECCSHHHHHHHHHHTT-T--SCEEEECSSCTTC-
T ss_pred CCCEEEECccHHHHHHHHHHhc-C--CcEEEEECCCCCCC
Confidence 3588999999999999999999 8 99999999887665
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=89.35 E-value=0.12 Score=61.67 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=34.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccC-CcCccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD-NIGGTW 780 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~-~~GG~w 780 (1129)
..+++|||+|++|+.+|..|.+.| .+|+|+|++. .+|+.+
T Consensus 21 ~yDVIVIGgG~AGl~AAlaLAr~G--~kVlLIEk~~~~iG~~~ 61 (641)
T 3cp8_A 21 MYDVIVVGAGHAGCEAALAVARGG--LHCLLITSDLSAVARMS 61 (641)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESCGGGTTCCS
T ss_pred cCCEEEECccHHHHHHHHHHHHCC--CcEEEEEecccccCCCc
Confidence 358899999999999999999999 9999999975 466543
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=89.33 E-value=0.13 Score=61.98 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=34.4
Q ss_pred eeccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 737 IKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 737 ~~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
....+++|||+|.+|+++|..|.+.| .+|+|+||....||
T Consensus 16 ~~~~DVvVVG~G~AGl~AAl~aa~~G--~~V~vlEK~~~~~g 55 (621)
T 2h88_A 16 DHEFDAVVVGAGGAGLRAAFGLSEAG--FNTACVTKLFPTRS 55 (621)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCGGGS
T ss_pred cccCCEEEECccHHHHHHHHHHHHCC--CcEEEEeccCCCCC
Confidence 34458899999999999999999999 99999999765443
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=89.30 E-value=0.15 Score=60.98 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=34.9
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w 780 (1129)
..+++|||+|.+|+++|..|.+.| .+|+|+|+++-.+|+-
T Consensus 32 ~~DVvVIGgGi~G~~~A~~La~rG--~~V~LlE~~~~~~GtS 71 (571)
T 2rgh_A 32 ELDLLIIGGGITGAGVAVQAAASG--IKTGLIEMQDFAEGTS 71 (571)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSTTCSGG
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCCcc
Confidence 358899999999999999999999 9999999987555543
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=89.26 E-value=0.32 Score=52.32 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=30.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|.-|...|..+++ .|++|+++|++.
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~--~G~~V~l~d~~~ 37 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAF--HGFAVTAYDINT 37 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCH
Confidence 3689999999999999999999 679999999854
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=89.26 E-value=0.12 Score=62.71 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=32.6
Q ss_pred cCccccccCCchhhHHHHHHh-hCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTE-AGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~-~g~~~~v~v~E~~~~~G 777 (1129)
-+|+|||+|++|+++|..|.+ .| ++|+|+||.+..+
T Consensus 33 ~dVlIVGaGpaGL~~A~~La~~~G--~~V~viEr~~~~~ 69 (639)
T 2dkh_A 33 VDVLIVGCGPAGLTLAAQLAAFPD--IRTCIVEQKEGPM 69 (639)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCTT--SCEEEECSSSSCC
T ss_pred CcEEEECcCHHHHHHHHHHHHhCC--CCEEEEeCCCCCC
Confidence 478999999999999999999 89 9999999987654
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=89.02 E-value=0.18 Score=55.89 Aligned_cols=36 Identities=22% Similarity=0.083 Sum_probs=32.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
-+++|||+|++|+.+|..+.+.| .+|+|+|+++..+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G--~~V~liE~~~~~~ 37 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLG--VPVRLFEMRPKRM 37 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT--CCEEEECCTTTSC
T ss_pred CCEEEECchHHHHHHHHHHHHCC--CcEEEEeccCCcC
Confidence 36899999999999999999999 9999999987544
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=89.00 E-value=0.13 Score=59.67 Aligned_cols=39 Identities=18% Similarity=0.085 Sum_probs=32.9
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
...+++|||+|.+|+++|..|.+.|+ .+|+|+|++..+|
T Consensus 22 ~~~dVvIIGgGiaGls~A~~La~~G~-~~V~vlE~~~~~~ 60 (448)
T 3axb_A 22 PRFDYVVVGAGVVGLAAAYYLKVWSG-GSVLVVDAGHAPG 60 (448)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHC-SCEEEEESSSSTT
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCC-CcEEEEccCCCCC
Confidence 34578999999999999999999984 6999999944443
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=88.79 E-value=0.15 Score=61.23 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=33.7
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.+++|||+|.+|+++|..|.+.|++.+|+|+||....+
T Consensus 6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~ 43 (602)
T 1kf6_A 6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMR 43 (602)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGG
T ss_pred CCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCC
Confidence 58899999999999999999988768999999986543
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=88.79 E-value=0.11 Score=61.45 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=29.3
Q ss_pred cCccccccCCchhhHHHHHHh---hCCCcceEEEcccC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTE---AGNGFTCTTFEQAD 774 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~---~g~~~~v~v~E~~~ 774 (1129)
.+|+|||+|++|+++|..|.+ .| .+|+|+|+.+
T Consensus 3 ~dVvIVGgG~aGl~~A~~La~~~~~G--~~V~lvE~~~ 38 (511)
T 2weu_A 3 RSVVIVGGGTAGWMTASYLKAAFDDR--IDVTLVESGN 38 (511)
T ss_dssp CEEEEECCHHHHHHHHHHHHHHHGGG--SEEEEEEC--
T ss_pred ceEEEECCCHHHHHHHHHHHhhcCCC--CEEEEEecCC
Confidence 478999999999999999999 88 9999999965
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=88.78 E-value=0.26 Score=50.45 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=32.6
Q ss_pred CCCCCeEEEEccCcchhhhHHHhhcccCeEEEEEE
Q psy12350 528 PFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLR 562 (1129)
Q Consensus 528 ~~~~k~v~ViG~g~sa~~~~~~l~~~~~~v~~~~r 562 (1129)
+++||+|+|||+|.+|...+..|.+.+++|+++..
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap 62 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAP 62 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence 58899999999999999999999999999998765
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=88.55 E-value=0.15 Score=61.88 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=32.8
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
..+++|||+|.+|+++|..|.+.| .+|+|+||....
T Consensus 5 ~~DVvVIGgG~AGL~AAl~aae~G--~~V~vlEK~~~~ 40 (660)
T 2bs2_A 5 YCDSLVIGGGLAGLRAAVATQQKG--LSTIVLSLIPVK 40 (660)
T ss_dssp ECSEEEECCSHHHHHHHHHHHTTT--CCEEEECSSCGG
T ss_pred cccEEEECchHHHHHHHHHHHHCC--CcEEEEeccCCC
Confidence 358999999999999999999999 999999998755
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=88.53 E-value=0.27 Score=54.52 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=31.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+..+|+|||+|..|+.+|+.|+. .|.+|+++|++.
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~--lGa~V~v~D~~~ 217 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKR--LGAKTTGYDVRP 217 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHH--HTCEEEEECSSG
T ss_pred CCCEEEEECchHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 45799999999999999999999 568999999864
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=88.11 E-value=0.17 Score=60.42 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=30.8
Q ss_pred ccCccccccCCchhhHHHHHHh---hCCCcceEEEcccC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTE---AGNGFTCTTFEQAD 774 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~---~g~~~~v~v~E~~~ 774 (1129)
..+|+|||+|++|+++|..|.+ .| .+|+|+|+.+
T Consensus 25 ~~dVvIVGgG~aGl~aA~~La~~~~~G--~~V~liE~~~ 61 (550)
T 2e4g_A 25 IDKILIVGGGTAGWMAASYLGKALQGT--ADITLLQAPD 61 (550)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTTS--SEEEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhhcCCC--CcEEEEeCCC
Confidence 4578999999999999999999 77 9999999964
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=88.09 E-value=0.37 Score=50.99 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=33.9
Q ss_pred CCCCCCeEEEEccCcchhhhHHHhhcccCeEEEEEEe
Q psy12350 527 EPFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLRF 563 (1129)
Q Consensus 527 ~~~~~k~v~ViG~g~sa~~~~~~l~~~~~~v~~~~r~ 563 (1129)
.+++||+|+|||+|.+|.-.+..|.+.+++|+++...
T Consensus 9 ~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~ 45 (274)
T 1kyq_A 9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (274)
T ss_dssp ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred EEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 3678999999999999999999999999999998764
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=87.92 E-value=0.36 Score=56.15 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=31.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|.-|+..|..|++.|.+++|+++|++.
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~ 44 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT 44 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 469999999999999999999965579999999853
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=87.88 E-value=0.18 Score=61.38 Aligned_cols=35 Identities=23% Similarity=0.501 Sum_probs=31.6
Q ss_pred cCccccccCCchhhHHHHHHh-----hCCCcceEEEcccCCc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTE-----AGNGFTCTTFEQADNI 776 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~-----~g~~~~v~v~E~~~~~ 776 (1129)
-+|+|||+|++|+++|..|.+ .| ++|+|+||.+..
T Consensus 9 ~dVlIVGaGpaGL~lA~~La~~~~~~~G--i~v~viE~~~~~ 48 (665)
T 1pn0_A 9 CDVLIVGAGPAGLMAARVLSEYVRQKPD--LKVRIIDKRSTK 48 (665)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTT--CCEEEECSSSSC
T ss_pred CcEEEECcCHHHHHHHHHHhccccccCC--CCEEEEeCCCCC
Confidence 478999999999999999999 89 999999997643
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=87.65 E-value=0.18 Score=59.95 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=30.8
Q ss_pred ccCccccccCCchhhHHHHHHh---hCCCcceEEEcccC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTE---AGNGFTCTTFEQAD 774 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~---~g~~~~v~v~E~~~ 774 (1129)
..+++|||+|++|+++|..|.+ .| ++|+|+|+..
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~~~~G--~~V~liE~~~ 41 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRALQQQ--ANITLIESAA 41 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCSS--CEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhcCCC--CEEEEECCCC
Confidence 3578999999999999999999 88 9999999954
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=87.61 E-value=0.33 Score=48.20 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=30.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCC-CceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGS-GFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~-~~~v~v~E~~~ 44 (1129)
.++|+|||+|.-|...|+.|.+ . |++|+++|++.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~--~~g~~V~vid~~~ 73 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRA--RYGKISLGIEIRE 73 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHH--HHCSCEEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHh--ccCCeEEEEECCH
Confidence 4689999999999999999999 5 68999999854
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=87.59 E-value=0.35 Score=45.57 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=29.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+|+|+|.-|...|+.|.+ .|++|+++|++.
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~--~g~~v~~~d~~~ 39 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHR--MGHEVLAVDINE 39 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHH--TTCCCEEEESCH
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 579999999999999999999 558999999843
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=87.32 E-value=0.16 Score=61.48 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=32.1
Q ss_pred CccccccCCchhhHHHHHHhhCC------CcceEEEcccC-Cc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGN------GFTCTTFEQAD-NI 776 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~------~~~v~v~E~~~-~~ 776 (1129)
.++|||+|.+||++|..|.+.|. .++|+|||+++ .+
T Consensus 58 ~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 58 RIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred eEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 57899999999999999998772 27899999999 99
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=87.30 E-value=0.25 Score=62.20 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=34.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCc-ceEEEcccCCc---Ccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGF-TCTTFEQADNI---GGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~-~v~v~E~~~~~---GG~w~ 781 (1129)
..+++|||+|.+|+++|.+|.+.| . +|+|+|++... |++|.
T Consensus 4 ~~dVvIIGgGi~Gls~A~~La~~G--~~~V~vlE~~~~~~~~gss~~ 48 (830)
T 1pj5_A 4 TPRIVIIGAGIVGTNLADELVTRG--WNNITVLDQGPLNMPGGSTSH 48 (830)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTT--CCCEEEECSSCTTCCCSGGGT
T ss_pred CCCEEEECcCHHHHHHHHHHHhCC--CCcEEEEeCCCCCCCccccee
Confidence 357899999999999999999999 7 89999998752 44554
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=87.00 E-value=0.36 Score=49.56 Aligned_cols=33 Identities=9% Similarity=0.288 Sum_probs=29.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
|+|+|||+|.-|...|+.|.+ .|++|+++|++.
T Consensus 1 M~iiIiG~G~~G~~la~~L~~--~g~~v~vid~~~ 33 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLS--RKYGVVIINKDR 33 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHH--TTCCEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence 479999999999999999999 569999999854
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=86.89 E-value=0.45 Score=53.06 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=30.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|.-|...|..|++ .|++|++++++.
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~--~g~~V~~~~r~~ 37 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLAL--KGQSVLAWDIDA 37 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred cCeEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence 3699999999999999999999 568999999843
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=86.73 E-value=0.42 Score=52.75 Aligned_cols=34 Identities=32% Similarity=0.537 Sum_probs=30.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQT 43 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~ 43 (1129)
...+|+|+|||.||+.+|+.|... |. +|+++|+.
T Consensus 187 ~d~kVVi~GAGaAG~~iA~ll~~~--Ga~~I~v~D~~ 221 (398)
T 2a9f_A 187 DEVSIVVNGGGSAGLSITRKLLAA--GATKVTVVDKF 221 (398)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHH--TCCEEEEEETT
T ss_pred CccEEEEECCCHHHHHHHHHHHHc--CCCeEEEEECC
Confidence 457999999999999999999995 46 99999995
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=86.63 E-value=0.49 Score=51.78 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=29.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~ 44 (1129)
.++|+|||||.-|.+.|..|++ .++ +|+++|++.
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~--~g~~~V~l~D~~~ 38 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGK--DNLADVVLFDIAE 38 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCceEEEEeCCc
Confidence 4799999999999999999998 456 899999854
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=86.60 E-value=0.18 Score=59.76 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=30.6
Q ss_pred ccCccccccCCchhhHHHHHHh------------hCCCcceEEEcccC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTE------------AGNGFTCTTFEQAD 774 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~------------~g~~~~v~v~E~~~ 774 (1129)
.-+|+|||+|++|+++|..|.+ .| ++|+|+|+.+
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G--~~V~liE~~~ 52 (526)
T 2pyx_A 7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPK--LNITLIESPD 52 (526)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCS--CEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCC--CeEEEEeCCC
Confidence 3478999999999999999999 78 9999999865
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=86.33 E-value=0.6 Score=50.82 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=30.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+|||||..|.+.|..|++.+.+++|+++|++.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~ 35 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 48999999999999999999865579999999954
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=86.32 E-value=0.37 Score=45.67 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=29.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|..|...|+.|++ .|++|+++++..
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~--~g~~v~v~~r~~ 54 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSY--PQYKVTVAGRNI 54 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCT--TTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCCH
Confidence 4799999999999999999998 567899999843
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=86.16 E-value=0.52 Score=53.28 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=30.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..+|+|||+|.+|+.+|+.|+. .|.+|+++|++.
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~--~Ga~V~v~D~~~ 205 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANS--LGAIVRAFDTRP 205 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCG
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCH
Confidence 4799999999999999999999 568999999854
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=85.71 E-value=0.69 Score=50.58 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=29.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~ 44 (1129)
.++|+|||||..|...|..|+.. ++ +|+++|.+.
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~--g~~~v~L~Di~~ 38 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQK--NLGDVVLFDIVK 38 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCH
Confidence 46999999999999999999994 45 799999854
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=85.66 E-value=0.33 Score=58.86 Aligned_cols=37 Identities=11% Similarity=-0.065 Sum_probs=32.6
Q ss_pred ccCccccccCCchhhHHHHHHhh------CCCcceEEEcccCCcC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEA------GNGFTCTTFEQADNIG 777 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~------g~~~~v~v~E~~~~~G 777 (1129)
..+++|||+|.+|+++|..|.+. | .+|+|+||....+
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG--~~V~vleK~~~~~ 64 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPE--AKILLVDKASLER 64 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTT--CCEEEECSSCTTT
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCC--CcEEEEEecCCCC
Confidence 46899999999999999999997 8 9999999976433
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=85.47 E-value=0.53 Score=51.91 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=30.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQT 43 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~ 43 (1129)
...+|+|+|||.+|..+|+.|...| . +|+++|+.
T Consensus 191 ~~~kVVv~GAGaAG~~iAkll~~~G--~~~I~v~Dr~ 225 (388)
T 1vl6_A 191 EEVKVVVNGIGAAGYNIVKFLLDLG--VKNVVAVDRK 225 (388)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHT--CCEEEEEETT
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCC--CCeEEEEECC
Confidence 4579999999999999999999954 5 89999995
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=85.40 E-value=0.67 Score=52.19 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=30.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
...+|+|||+|..|+.+|+.++. .|.+|+++|++.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~--~Ga~V~~~d~~~ 205 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKR--LGAVVMATDVRA 205 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 35799999999999999999999 567899999854
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=85.24 E-value=0.6 Score=50.47 Aligned_cols=34 Identities=29% Similarity=0.337 Sum_probs=30.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|.|||.|.-|...|+.|++ .|++|++++++.
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~--~G~~V~~~dr~~ 48 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTE--WPGGVTVYDIRI 48 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTT--STTCEEEECSST
T ss_pred CCeEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCH
Confidence 4689999999999999999999 669999999865
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=85.24 E-value=0.69 Score=50.78 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=29.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~ 44 (1129)
+++|+|||||.-|.+.|..|++ .++ +|+++|++.
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~--~g~~~V~L~D~~~ 43 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCAL--RELADVVLYDVVK 43 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEECCh
Confidence 3699999999999999999998 446 899999854
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=85.19 E-value=0.7 Score=50.35 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=31.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..++|.|||+|.-|...|+.|++ .|++|++++++.
T Consensus 20 ~m~~I~iIG~G~mG~~~A~~l~~--~G~~V~~~dr~~ 54 (310)
T 3doj_A 20 HMMEVGFLGLGIMGKAMSMNLLK--NGFKVTVWNRTL 54 (310)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSG
T ss_pred cCCEEEEECccHHHHHHHHHHHH--CCCeEEEEeCCH
Confidence 34799999999999999999999 669999999854
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=84.89 E-value=0.68 Score=50.71 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=29.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+|||+|.-|.+.|..|++ .|++|++++|++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~--~g~~V~~~~r~~ 35 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAK--TGHCVSVVSRSD 35 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHH--TTCEEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCh
Confidence 689999999999999999999 568999999843
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=84.75 E-value=0.62 Score=54.03 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=31.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|.-|+..|..|++.|.|++|+++|++.
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~ 40 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE 40 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 368999999999999999999964479999999853
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=84.66 E-value=0.83 Score=46.47 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=30.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
.++|+|||+|.-|.+.|..|++ .|++|++++++..
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~--~g~~V~~~~~~~~ 53 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEI--AGHEVTYYGSKDQ 53 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH--TTCEEEEECTTCC
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCHH
Confidence 4789999999999999999999 5689999998653
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=84.62 E-value=0.76 Score=49.40 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=29.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
|+|+|||+|.-|.+.|..|++ .|++|++++|+.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~r~~ 33 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCK--QGHEVQGWLRVP 33 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSC
T ss_pred CeEEEECcCHHHHHHHHHHHh--CCCCEEEEEcCc
Confidence 479999999999999999999 568999999855
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=84.53 E-value=0.44 Score=57.82 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=31.9
Q ss_pred eccCccccccCCchhhHHHHHH---h-hCCCcceEEEcccCC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLT---E-AGNGFTCTTFEQADN 775 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~---~-~g~~~~v~v~E~~~~ 775 (1129)
...+++|||+|.+|+++|..|. + .| .+|+|+||...
T Consensus 21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G--~~V~vlEK~~~ 60 (643)
T 1jnr_A 21 VETDILIIGGGFSGCGAAYEAAYWAKLGG--LKVTLVEKAAV 60 (643)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHTTTT--CCEEEECSSCT
T ss_pred ccCCEEEECcCHHHHHHHHHHhhhhhhCC--CeEEEEeCcCC
Confidence 4468999999999999999999 5 78 99999999864
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=84.44 E-value=0.64 Score=53.56 Aligned_cols=35 Identities=29% Similarity=0.528 Sum_probs=31.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCC-Cc-eEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGS-GF-TCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~-~~-~v~v~E~~~ 44 (1129)
+.++|+|||+|.-|+..|..|++ . |+ +|+++|++.
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~--~~G~~~V~~~D~~~ 53 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFAD--APCFEKVLGFQRNS 53 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHH--STTCCEEEEECCCC
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--hCCCCeEEEEECCh
Confidence 45799999999999999999999 5 79 999999965
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=84.36 E-value=0.74 Score=50.38 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=29.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCc--eEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGF--TCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~--~v~v~E~~~ 44 (1129)
+.++|+|||||.-|...|..|++ .++ +|+++|++.
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~--~g~~~~V~l~d~~~ 42 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQ--RGIAREIVLEDIAK 42 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCCh
Confidence 34799999999999999999999 456 999999853
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=84.08 E-value=0.75 Score=50.13 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=29.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+|||+|.-|...|..|++ .|++|++++++.
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~r~~ 36 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQ--GGNDVTLIDQWP 36 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred CeEEEECcCHHHHHHHHHHHh--CCCcEEEEECCH
Confidence 589999999999999999999 568999999844
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=83.96 E-value=0.71 Score=50.93 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=29.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT 43 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~ 43 (1129)
++|+|||+|.-|.+.|..|++ .|++|++++|+
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~--~g~~V~~~~r~ 35 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLAL--AGEAINVLARG 35 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHH--TTCCEEEECCH
T ss_pred CEEEEECcCHHHHHHHHHHHH--CCCEEEEEECh
Confidence 689999999999999999999 56899999984
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=83.86 E-value=0.69 Score=53.36 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=31.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..|+|+|+|+|--|...|+.|.+ .+++|+++|+++
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~--~~~~v~vId~d~ 36 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVG--ENNDITIVDKDG 36 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCS--TTEEEEEEESCH
T ss_pred CcCEEEEECCCHHHHHHHHHHHH--CCCCEEEEECCH
Confidence 35899999999999999999999 569999999854
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=83.83 E-value=0.92 Score=49.18 Aligned_cols=33 Identities=33% Similarity=0.519 Sum_probs=30.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+|||+|.-|...|..|++ .|++|+++|++.
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~--~G~~V~~~d~~~ 48 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAA--TGHTVVLVDQTE 48 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence 689999999999999999999 669999999854
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=83.70 E-value=0.82 Score=50.16 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=29.7
Q ss_pred cceEEEEcCChHHHH-HHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLT-ATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~-aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|.|||.|.+|++ +|+.|++ .|++|+++|+++
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~--~G~~V~~~D~~~ 38 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKE--AGFEVSGCDAKM 38 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred CcEEEEEEECHHHHHHHHHHHHh--CCCEEEEEcCCC
Confidence 378999999999996 7888888 679999999854
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=83.64 E-value=1.1 Score=50.17 Aligned_cols=42 Identities=24% Similarity=0.433 Sum_probs=34.3
Q ss_pred CCCCCCCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 1 MVQDKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 1 m~~~~~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
||...+.+.++|.|||+|.-|...|+.+++ .|++|++++..+
T Consensus 4 ~~~~~~~~~~~IlIlG~G~lg~~la~aa~~--lG~~viv~d~~~ 45 (377)
T 3orq_A 4 MNFNKLKFGATIGIIGGGQLGKMMAQSAQK--MGYKVVVLDPSE 45 (377)
T ss_dssp SSCCCCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCT
T ss_pred cccccCCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEECCC
Confidence 444434456899999999999999999999 679999998754
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=83.28 E-value=1 Score=48.89 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=31.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..++|.|||.|.-|...|+.|++ .|++|++++++.
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~--~G~~V~~~dr~~ 42 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLK--QGKRVAIWNRSP 42 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSH
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 45799999999999999999999 669999999854
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=83.07 E-value=0.7 Score=52.41 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=30.5
Q ss_pred CeEEEEcCCccHHHHHHHHHh-cC-CEEEEEecCC
Q psy12350 870 KQAVVVGSGQSGLDITLDIAT-TG-KQAVVVGSGQ 902 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~-~~-~~V~vv~~~~ 902 (1129)
.+|+|||+|.+|+-+|..|++ .| .+|+++++..
T Consensus 22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~ 56 (405)
T 2gag_B 22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW 56 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 479999999999999999999 99 9999998754
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=82.86 E-value=0.94 Score=50.47 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=30.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..+|+|+|+|.+|+.++..|+. .|.+|++++++.
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~--~Ga~V~v~dr~~ 200 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVG--LGAQVQIFDINV 200 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence 3799999999999999999999 557999999854
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=82.81 E-value=0.89 Score=52.69 Aligned_cols=34 Identities=21% Similarity=0.458 Sum_probs=30.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|.-|+..|..|++ .|++|+++|++.
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~--~G~~V~~~d~~~ 41 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLAD--IGHDVFCLDVDQ 41 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred CceEEEECcCHHHHHHHHHHHh--CCCEEEEEECCH
Confidence 5899999999999999999999 669999999853
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=82.68 E-value=0.77 Score=50.06 Aligned_cols=32 Identities=31% Similarity=0.388 Sum_probs=28.7
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT 43 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~ 43 (1129)
++|+|||+|.-|.+.|..|++ .|++|++++|+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~--~g~~V~~~~r~ 34 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQR--SGEDVHFLLRR 34 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHH--TSCCEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHH--CCCeEEEEEcC
Confidence 689999999999999999999 56899999984
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=82.45 E-value=1.1 Score=49.06 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=29.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~ 44 (1129)
+++|+|||||.-|.+.|..|+. .++ +|+++|.+.
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~--~g~~~V~L~Di~~ 48 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQ--KDLGDVYMFDIIE 48 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSST
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEECCH
Confidence 3699999999999999999999 456 899999854
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=82.41 E-value=1 Score=43.13 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 868 AGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 868 ~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
..++|+|+|+|..|..++..|.+.|.+|+++.+.
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 3578999999999999999999999999999873
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=82.39 E-value=1.1 Score=45.67 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=29.9
Q ss_pred ccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 859 RDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 859 ~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
+...+......++|.|||+|..|.-+|..|++.|.+|+++.+.
T Consensus 9 ~~~~~~~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~ 51 (209)
T 2raf_A 9 HHHHENLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSK 51 (209)
T ss_dssp -----------CEEEEECCSHHHHHHHHHHHHTTCEEEEECTT
T ss_pred cccccccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3333444566889999999999999999999999999998764
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=82.22 E-value=1 Score=49.88 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=30.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|.-|.+.|..|++ .|++|+++++++
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~--~G~~V~l~~r~~ 62 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLAR--KGQKVRLWSYES 62 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHT--TTCCEEEECSCH
T ss_pred CCeEEEECccHHHHHHHHHHHH--CCCeEEEEeCCH
Confidence 4799999999999999999999 669999999854
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=82.18 E-value=1 Score=49.96 Aligned_cols=37 Identities=27% Similarity=0.548 Sum_probs=31.0
Q ss_pred CCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 6 ~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
|+..++|.|||.|.-|...|+.|++ .|++|++++++.
T Consensus 19 Mm~~mkIgiIGlG~mG~~~A~~L~~--~G~~V~v~dr~~ 55 (358)
T 4e21_A 19 YFQSMQIGMIGLGRMGADMVRRLRK--GGHECVVYDLNV 55 (358)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred hhcCCEEEEECchHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence 3445799999999999999999999 669999999854
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=82.13 E-value=1 Score=49.30 Aligned_cols=34 Identities=29% Similarity=0.582 Sum_probs=30.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|.-|...|+.|++ .|++|++++++.
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~--~G~~V~~~dr~~ 64 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCE--AGYALQVWNRTP 64 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHH--TTCEEEEECSCH
T ss_pred CCEEEEECccHHHHHHHHHHHh--CCCeEEEEcCCH
Confidence 4699999999999999999999 669999999854
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=81.98 E-value=1.1 Score=48.99 Aligned_cols=35 Identities=17% Similarity=0.108 Sum_probs=29.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT 43 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~ 43 (1129)
++||+|||||..|.+.|..|+..+...+++++|.+
T Consensus 6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~ 40 (317)
T 3d0o_A 6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD 40 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 47999999999999999999985544589999874
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=81.92 E-value=1 Score=48.74 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=29.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..+|+|||||.-|-.-|..++. .|++|+++|..+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~--~G~~V~l~D~~~ 39 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFAS--GGFRVKLYDIEP 39 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH--TTCCEEEECSCH
T ss_pred CCeEEEECCcHHHHHHHHHHHh--CCCeEEEEECCH
Confidence 4689999999999999999999 679999999854
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=81.78 E-value=1 Score=51.90 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEec
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGS 900 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~ 900 (1129)
+++||+|+|||+|.+|.-.+..|.+.|++|+++..
T Consensus 9 ~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~ 43 (457)
T 1pjq_A 9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNAL 43 (457)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcC
Confidence 46799999999999999999999999999999975
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=81.71 E-value=1.4 Score=48.08 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=30.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+.++|+|||+|..|.+.|..|+..+.. +++++|...
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~-~v~l~Di~~ 39 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALIKQLG-DVVLFDIAQ 39 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCCh
Confidence 347999999999999999999985543 999999854
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=81.27 E-value=1.1 Score=51.53 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=30.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+|||+|.-|+..|..|++ .|++|+++|++.
T Consensus 3 mkI~VIG~G~vG~~lA~~La~--~G~~V~~~D~~~ 35 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAE--LGANVRCIDTDR 35 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred CEEEEECcCHHHHHHHHHHHh--cCCEEEEEECCH
Confidence 689999999999999999999 669999999854
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=81.25 E-value=1.5 Score=50.00 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=31.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..++|+|||+|.-|...|..|++ .|++|+++|++.
T Consensus 53 ~i~kVaVIGaG~MG~~IA~~la~--aG~~V~l~D~~~ 87 (460)
T 3k6j_A 53 DVNSVAIIGGGTMGKAMAICFGL--AGIETFLVVRNE 87 (460)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred cCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEECcH
Confidence 34799999999999999999999 679999999954
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=80.97 E-value=1.3 Score=39.82 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhcC-CEEEEEecC
Q psy12350 868 AGKQAVVVGSGQSGLDITLDIATTG-KQAVVVGSG 901 (1129)
Q Consensus 868 ~gk~VvVVG~G~Sg~eiA~~la~~~-~~V~vv~~~ 901 (1129)
.+++|+|+|+|..|..++..|.+.| .+|+++.+.
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~ 38 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD 38 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence 3579999999999999999999999 888888764
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=80.86 E-value=1.4 Score=48.06 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=30.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+.+||+|||||.-|.+.|..|+..+.. +|+++|...
T Consensus 6 ~~~kI~viGaG~vG~~~a~~l~~~~~~-~v~L~Di~~ 41 (324)
T 3gvi_A 6 ARNKIALIGSGMIGGTLAHLAGLKELG-DVVLFDIAE 41 (324)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSS
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCC-eEEEEeCCc
Confidence 347999999999999999999995432 999999854
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=80.73 E-value=1 Score=42.34 Aligned_cols=34 Identities=21% Similarity=0.482 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 868 AGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 868 ~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
..++|+|+|+|..|..+|..|.+.|.+|+++++.
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 3578999999999999999999999999999874
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=80.67 E-value=1.4 Score=47.71 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=29.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQT 43 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~ 43 (1129)
..++|+|||+|.-|.+.|..|+.. ++ +|+++|+.
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~--g~~~v~l~D~~ 41 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQK--ELADVVLVDIP 41 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCCEEEEECCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCCeEEEEecc
Confidence 357999999999999999999994 46 99999985
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=80.66 E-value=1.1 Score=48.36 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=30.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+++|+|||+|.-|...|..|.+ .|++|++++++.
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~~~~ 37 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLK--EGVTVYAFDLME 37 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHH--TTCEEEEECSSH
T ss_pred CCEEEEECccHHHHHHHHHHHH--CCCeEEEEeCCH
Confidence 4789999999999999999999 568999998843
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.64 E-value=1.3 Score=48.29 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=30.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|.-|...|..|++ .|++|++++++.
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~--~g~~V~~~~~~~ 63 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLK--MGHTVTVWNRTA 63 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHH--TTCCEEEECSSG
T ss_pred CCeEEEEcccHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence 4789999999999999999999 568999999854
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=80.62 E-value=1.2 Score=48.10 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=28.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+||+|||||..|.+.|..|+..|...+|+++|++.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~ 35 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE 35 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 48999999999999999999944222899999843
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=80.51 E-value=0.76 Score=54.88 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=38.7
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
..+++|+|+|..|-..|..|.+.| .+|.++||++++||.|.
T Consensus 8 ~~D~~i~GtGl~~~~~a~~~~~~g--~~vl~id~~~~~gg~~~ 48 (650)
T 1vg0_A 8 DFDVIVIGTGLPESIIAAACSRSG--QRVLHVDSRSYYGGNWA 48 (650)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGC
T ss_pred cCCEEEECCcHHHHHHHHHHHhCC--CEEEEEcCCCcccCccc
Confidence 458899999999999999999999 99999999999999987
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=80.51 E-value=1.3 Score=46.18 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=30.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..++|.|||+|.-|.+.|+.|++ .|++|++++|+.
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~--~G~~V~~~~r~~ 52 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALAD--LGHEVTIGTRDP 52 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCh
Confidence 35899999999999999999999 569999999854
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=80.50 E-value=1.2 Score=47.73 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=30.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|.|||+|.-|...|+.|++ .|++|++++++.
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~--~G~~V~~~dr~~ 34 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVK--AGCSVTIWNRSP 34 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSG
T ss_pred CEEEEEeecHHHHHHHHHHHH--CCCeEEEEcCCH
Confidence 689999999999999999999 669999999854
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=80.47 E-value=1.4 Score=41.01 Aligned_cols=33 Identities=18% Similarity=0.478 Sum_probs=29.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
+++|+|+|+|..|..+|..|++.+.+|+++.+.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 468999999999999999999999999998763
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=80.45 E-value=1.3 Score=48.00 Aligned_cols=34 Identities=21% Similarity=0.456 Sum_probs=30.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|.|||+|.-|...|+.|++ .|++|++++++.
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~--~G~~V~~~dr~~ 40 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLR--AGLSTWGADLNP 40 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHH--CCCeEEEEECCH
Confidence 4799999999999999999999 669999999854
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=80.27 E-value=1.3 Score=49.46 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=30.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|..|+.+|+.|+. .|.+|++++++.
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~--~Ga~V~~~d~~~ 199 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALG--MGAQVTILDVNH 199 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEECCH
Confidence 4799999999999999999999 568999999854
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=80.14 E-value=1.3 Score=49.51 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=30.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..++|+|||+|..|+.+|+.++. .|.+|+++|++.
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~--~Ga~V~~~d~~~ 201 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANG--MGATVTVLDINI 201 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence 35799999999999999999999 668999999843
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=80.10 E-value=1.6 Score=46.89 Aligned_cols=33 Identities=18% Similarity=0.395 Sum_probs=29.7
Q ss_pred ceEEEEcC-ChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGG-GAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGa-G~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+|||+ |--|.+.|+.|++ .|++|++++++.
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~--~g~~V~~~~r~~ 45 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHD--SAHHLAAIEIAP 45 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH--SSSEEEEECCSH
T ss_pred CEEEEECCCCHHHHHHHHHHHh--CCCEEEEEECCH
Confidence 59999999 9999999999999 568999999854
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1129 | ||||
| d2gv8a1 | 335 | c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox | 8e-18 | |
| d2gv8a1 | 335 | c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox | 6e-14 | |
| d2gv8a1 | 335 | c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox | 9e-13 | |
| d2gv8a2 | 107 | c.3.1.5 (A:181-287) Flavin-dependent monoxygenase | 5e-17 | |
| d2gv8a2 | 107 | c.3.1.5 (A:181-287) Flavin-dependent monoxygenase | 6e-13 | |
| d2gv8a2 | 107 | c.3.1.5 (A:181-287) Flavin-dependent monoxygenase | 4e-09 | |
| d2gv8a2 | 107 | c.3.1.5 (A:181-287) Flavin-dependent monoxygenase | 4e-07 | |
| d1w4xa1 | 298 | c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy | 5e-10 | |
| d1w4xa1 | 298 | c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy | 2e-05 | |
| d1w4xa2 | 235 | c.3.1.5 (A:155-389) Phenylacetone monooxygenase {T | 2e-09 | |
| d1w4xa2 | 235 | c.3.1.5 (A:155-389) Phenylacetone monooxygenase {T | 2e-07 | |
| d1w4xa2 | 235 | c.3.1.5 (A:155-389) Phenylacetone monooxygenase {T | 2e-07 | |
| d1w4xa2 | 235 | c.3.1.5 (A:155-389) Phenylacetone monooxygenase {T | 6e-05 | |
| d1w4xa2 | 235 | c.3.1.5 (A:155-389) Phenylacetone monooxygenase {T | 5e-04 | |
| d1w4xa2 | 235 | c.3.1.5 (A:155-389) Phenylacetone monooxygenase {T | 5e-04 | |
| d2iida1 | 370 | c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M | 2e-07 | |
| d1cjca2 | 230 | c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase | 7e-06 | |
| d1cjca2 | 230 | c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase | 1e-04 | |
| d2dw4a2 | 449 | c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist | 5e-05 | |
| d1seza1 | 373 | c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox | 7e-05 | |
| d2ivda1 | 347 | c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox | 2e-04 | |
| d2v5za1 | 383 | c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H | 5e-04 | |
| d2bi7a1 | 314 | c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu | 7e-04 | |
| d2gjca1 | 311 | c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th | 7e-04 | |
| d1rp0a1 | 278 | c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi | 0.001 | |
| d1d5ta1 | 336 | c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di | 0.002 |
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 83.9 bits (206), Expect = 8e-18
Identities = 64/389 (16%), Positives = 110/389 (28%), Gaps = 87/389 (22%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGC------------------D 789
GP GL K L T FE+ + GG W YT +
Sbjct: 13 GPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGP 72
Query: 790 QYGLPVHSSMYKSLKTNLPKDLMELCGYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKD 849
S +Y+ L+TN P +LM C + + E
Sbjct: 73 AALPVYPSPLYRDLQTNTPIELMGYCDQ-SFKPQTLQFPHRHTIQEYQRIY-------AQ 124
Query: 850 MCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITL 909
I + D E G V ++G I+ AV + +G + T
Sbjct: 125 PLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS----KDIFDAVSICNGHYEVPYTG 180
Query: 910 DIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGY 969
+ + P +A+L + D
Sbjct: 181 YLYSVP-----------------------FPSLAKLKSPETKLIDDGS------------ 205
Query: 970 SNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTLLFNLFDLQVRLFQQL 1029
+V +Y+H I PT+ +G+ H + F Q ++
Sbjct: 206 ------------------HVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARV 247
Query: 1030 MQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGHRSENFLNSIISMMRDESPLPP 1089
G + LPSKEE L + + G N + + ++N + + +P+
Sbjct: 248 WSGRLKLPSKEEQLKWQDELM--FSLSGANNMYHSLDYPKDATYINKLHDWCKQATPVLE 305
Query: 1090 VLL--KVYFDSYGQLTEDFIGFRNNKYQI 1116
+ + + E+ R + I
Sbjct: 306 EEFPSPYWGEKERSIRENMWSIRAKFFGI 334
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 72.0 bits (175), Expect = 6e-14
Identities = 38/219 (17%), Positives = 72/219 (32%), Gaps = 19/219 (8%)
Query: 37 CTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHHKGHPDKS 96
T + G+WV T + + + ++ + +G++ +
Sbjct: 133 ATDVLDIEKKDGSWVVTYKGTKAG----------SPISKDIFDAVSICNGHYEVPYTGYL 182
Query: 97 YIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLF 156
Y L L L +V +Y+H+ I P++ +G+ V F
Sbjct: 183 YSVPFPSLAKLKSPE-----TKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTS 237
Query: 157 DLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCS 216
Q F ++ G + LPSK E L ++ + G N + + Y+N L
Sbjct: 238 QAQAAFLARVWSGRLKLPSKEEQLKWQDELM--FSLSGANNMYHSLDYPKDATYINKLHD 295
Query: 217 MMRDESPVPPVLL--KIYFESFARCSEDFTEFRKDKYKI 253
+ +PV + E E+ R + I
Sbjct: 296 WCKQATPVLEEEFPSPYWGEKERSIRENMWSIRAKFFGI 334
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 68.5 bits (166), Expect = 9e-13
Identities = 28/127 (22%), Positives = 41/127 (32%), Gaps = 19/127 (14%)
Query: 12 IGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGR------------- 58
I +IG G GL K L + T FE+ + GG W YT
Sbjct: 7 IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTT 66
Query: 59 -----DQYGLPVHSSMYKSLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADN 113
S +Y+ L+TN P E+M K + + + + EY +A
Sbjct: 67 EPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQ-FPHRHTIQEYQRIYAQP 125
Query: 114 FNLRNLC 120
Sbjct: 126 LLPFIKL 132
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 107 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 75.4 bits (185), Expect = 5e-17
Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 10/108 (9%)
Query: 586 PEFKG----KDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVFLS 641
P KG +LHS +R PE F G+ +VVG S D+ + A
Sbjct: 2 PNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQ 61
Query: 642 HHSERVTSLCLPNNVVLKPDVAELTPTG--VRFQDGSYEQ-VD-IILC 685
++ P++ + PT + + G +D +I C
Sbjct: 62 SL--LGGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYC 107
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 107 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 63.9 bits (155), Expect = 6e-13
Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 33/131 (25%)
Query: 843 PEFKG----KDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVV 898
P KG +LHS +R PE F G+ +VVG S D+ + K +
Sbjct: 2 PNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQ 61
Query: 899 GSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTG--VRFQDGS 956
S ++ P++ + PT + + G
Sbjct: 62 -------------------------SLLGGGDIQNESLQQVPEITKFDPTTREIYLKGGK 96
Query: 957 YEQ-VD-IILC 965
+D +I C
Sbjct: 97 VLSNIDRVIYC 107
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 107 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 53.1 bits (127), Expect = 4e-09
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 505 PDFKG----KDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHDISTEATTV 557
P+ KG ++HS +R PE F G+ +VVG S D+ ++ A
Sbjct: 2 PNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHP 58
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 107 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 47.3 bits (112), Expect = 4e-07
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 266 ANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPNNVVKKPDIAELTPTG--VRFQDGS 323
S D+ ++ A ++ + P+I + PT + + G
Sbjct: 39 GGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ--NESLQQVPEITKFDPTTREIYLKGGK 96
Query: 324 YEQ-VDIILYC 333
+D ++YC
Sbjct: 97 VLSNIDRVIYC 107
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 59.8 bits (144), Expect = 5e-10
Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 14/110 (12%)
Query: 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSL 73
V+G G GL A RL E G E +VGG W + G +
Sbjct: 12 VVGAGFSGLYALYRLRELGRSVHV--IETAGDVGGVWYWNRYP-----GARCDIESIEYC 64
Query: 74 KTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVN 123
+ + + + + Y + ++L Y+N AD F+LR+ +
Sbjct: 65 YSFSEEV-------LQEWNWTERYASQPEILRYINFVADKFDLRSGITFH 107
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 46.0 bits (108), Expect = 2e-05
Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 7/98 (7%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNL 807
G GL A RL E G E A ++GG W + + G + +
Sbjct: 16 GFSGLYALYRLRELGRSVHV--IETAGDVGGVWYWNRYPGA-----RCDIESIEYCYSFS 68
Query: 808 PKDLMELCGYGHKGNADKSYIGAKDVLENYNHPIYPEF 845
+ L E + + V + ++ F
Sbjct: 69 EEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITF 106
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 57.1 bits (136), Expect = 2e-09
Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
Query: 502 PVYPDFKGKDVCQIPIMHSHEY-RTPEPFAGKRAVVVGSGPSGLDITHDISTEATTVSAY 560
P P+F G + H+ + P F+G+R V+G+G SG+ ++ I+ +A + +
Sbjct: 2 PQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVF 61
Query: 561 LRFDNKTITKRKKFDKGRNYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFA 611
R + + R + ++ + + Y+ P+
Sbjct: 62 QRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSAL 112
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 51.3 bits (121), Expect = 2e-07
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 583 PIYPEFKGKDMCQIPILHSRDY-RTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVFLS 641
P P F G + H+ ++ P F+G++ V+G+G SG+ ++ IA +A+ +F+
Sbjct: 2 PQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVF 61
Query: 642 HH 643
Sbjct: 62 QR 63
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 50.9 bits (120), Expect = 2e-07
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 840 PIYPEFKGKDMCQIPILHSRDY-RTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQ 894
P P F G + H+ ++ P F+G++ V+G+G SG+ ++ IA +
Sbjct: 2 PQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAE 57
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 43.6 bits (101), Expect = 6e-05
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 286 FLSHHSEHVKKLRFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGY 336
+ E + I +TP GVR + YE +D ++ TG+
Sbjct: 186 LEIDYYEMFNRDNVHLVDTLSAPIETITPRGVRTSEREYE-LDSLVLATGF 235
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 40.9 bits (94), Expect = 5e-04
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 657 VLKPDVAELTPTGVRFQDGSYEQVDIILCCTGY 689
L + +TP GVR + YE +D ++ TG+
Sbjct: 204 TLSAPIETITPRGVRTSEREYE-LDSLVLATGF 235
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 40.9 bits (94), Expect = 5e-04
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 937 VLKPDVAELTPTGVRFQDGSYEQVDIILCCTGY 969
L + +TP GVR + YE +D ++ TG+
Sbjct: 204 TLSAPIETITPRGVRTSEREYE-LDSLVLATGF 235
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Score = 52.5 bits (124), Expect = 2e-07
Identities = 28/236 (11%), Positives = 68/236 (28%), Gaps = 19/236 (8%)
Query: 5 KTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLP 64
TS H+ ++G G GL+A L +G T E ++ GG V T + +
Sbjct: 26 ATSNPKHVVIVGAGMAGLSAAYVLAG--AGHQVTVLEASERPGG-RVRTYRNEEAGWYAN 82
Query: 65 VHSSMYKSLKTNLPKEIME--LSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLV 122
+ + + I + L D ++ ++ + + + + L +
Sbjct: 83 LGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVK 142
Query: 123 NK---------NVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVTL 173
+ L K + ++ + I DT + ++ +
Sbjct: 143 PSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGD 202
Query: 174 PSKAEM-----LADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPV 224
+ ++ + E + M + + + + V
Sbjct: 203 LLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQV 258
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.4 bits (109), Expect = 7e-06
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52
T I V+G G G + L + S +E+ G +
Sbjct: 1 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF 44
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.6 bits (99), Expect = 1e-04
Identities = 16/178 (8%), Positives = 43/178 (24%), Gaps = 12/178 (6%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKS----- 802
GP G + L + + +E+ G + + +++ +
Sbjct: 10 GPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRC 69
Query: 803 ---LKTNLPKD--LMELC-GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPIL 856
+ +D + EL Y + + ++ +M +
Sbjct: 70 AFYGNVEVGRDVTVQELQDAYHAVVLSYGAE-DKSRPIDPSVPFDPKLGVVPNMEGRVVD 128
Query: 857 HSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATR 914
Y + G V+ + + K + + G +
Sbjct: 129 VPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKAGHLPSGPRPGSAFIKALLDS 186
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (103), Expect = 5e-05
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTG 57
T T + +IG G GL A ++L G T E D VGG V T + G
Sbjct: 2 TKKTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARDRVGG-RVATFRKG 50
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 44.1 bits (102), Expect = 7e-05
Identities = 36/235 (15%), Positives = 60/235 (25%), Gaps = 4/235 (1%)
Query: 12 IGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG-TWVYTEQTGRDQYGLPVHSSMY 70
+ VIG G GL A +L G T FE GG ++ G +
Sbjct: 4 VAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESE 61
Query: 71 KSLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLY 130
+ L + +K YIA N L + N +Q L
Sbjct: 62 GDVT-FLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLL 120
Query: 131 KHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGR 190
+ ++ + GF+ L+ V + + +
Sbjct: 121 EPILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPE 180
Query: 191 LREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE 245
L + I+G K + SF + T+
Sbjct: 181 LWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTD 235
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Score = 42.4 bits (98), Expect = 2e-04
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTG 57
+++ V+GGG GL L G E + +GG V T
Sbjct: 1 MNVAVVGGGISGLAVAHHLRS--RGTDAVLLESSARLGG-AVGTHALA 45
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 5e-04
Identities = 36/288 (12%), Positives = 74/288 (25%), Gaps = 20/288 (6%)
Query: 12 IGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYK 71
+ V+GGG G+ A K L + SG E D VGG YT + + + + S
Sbjct: 2 VVVVGGGISGMAAAKLLHD--SGLNVVVLEARDRVGG-RTYTLRN-QKVKYVDLGGSYVG 57
Query: 72 SLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYK 131
+ + + EL G ++ ++ + F + N +
Sbjct: 58 PTQNRILRLAKEL------GLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHN 111
Query: 132 HLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRL 191
+ I + +L+ S ++
Sbjct: 112 NFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAE 171
Query: 192 REGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKDKY 251
+ F ++ + + + E D + +
Sbjct: 172 THEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVI 231
Query: 252 KIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRF 299
I + V ++ + EA V + K+ F
Sbjct: 232 YIDQTRENVL----------VETLNHEMYEAKYVISAIPPTLGMKIHF 269
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Score = 40.6 bits (94), Expect = 7e-04
Identities = 26/161 (16%), Positives = 47/161 (29%), Gaps = 9/161 (5%)
Query: 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMY 70
I ++G G G ++L E G +Q D++GG Y + + + VH
Sbjct: 4 KILIVGAGFSGAVIGRQLAE--KGHQVHIIDQRDHIGG-NSYDARD--SETNVMVHVYGP 58
Query: 71 KSLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLY 130
T+ Y +K Y+ F+ NL +
Sbjct: 59 HIFHTDNETVWN----YVNKHAEMMPYVNRVKATVNGQVFSLPINLHTINQFFSKTCSPD 114
Query: 131 KHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHV 171
+ I I P+ L + + +G+
Sbjct: 115 EARALIAEKGDSTIADPQTFEEEALRFIGKELYEAFFKGYT 155
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.7 bits (94), Expect = 7e-04
Identities = 19/210 (9%), Positives = 42/210 (20%), Gaps = 14/210 (6%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNL 807
G GL+A + + E + GG + + V L
Sbjct: 59 GSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQL----FSAMVMRKPAHLFLQEL 114
Query: 808 PKDLMELCGYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPF 867
+ Y +A + + + R P
Sbjct: 115 EIPYEDEGDYVVVKHAALFISTV--------LSKVLQLPNVKLFNATCVEDLVTRPPTEK 166
Query: 868 AGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERV 927
V + + + V+ +G + + H
Sbjct: 167 GEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPF 226
Query: 928 TSLCLPNNVV--LKPDVAELTPTGVRFQDG 955
+ C V + + + +
Sbjct: 227 GAFCAKRIVDIDQNQKLGGMKGLDMNHAEH 256
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Score = 39.5 bits (91), Expect = 0.001
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 12 IGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52
+ V+G G+ GL+A +++ EQ+ + GG
Sbjct: 36 VVVVGAGSAGLSAAYEISKNP-NVQVAIIEQSVSPGGGAWL 75
|
| >d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.4 bits (90), Expect = 0.002
Identities = 9/95 (9%), Positives = 26/95 (27%), Gaps = 2/95 (2%)
Query: 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSL 73
V+G G + ++ +G ++ GG + +++
Sbjct: 11 VLGTGLTECILSGIMSV--NGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETM 68
Query: 74 KTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLN 108
+ + + + +V YL+
Sbjct: 69 GRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLD 103
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1129 | |||
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.94 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.84 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.76 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.75 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.67 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.66 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.6 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.58 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.52 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.49 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.35 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.32 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.27 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.26 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.21 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.21 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.18 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.16 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.16 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.14 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.09 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 99.07 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.06 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.04 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.0 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 98.98 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.98 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 98.96 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.96 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 98.96 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 98.95 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.94 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 98.94 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.93 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.9 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.9 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 98.89 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.87 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.86 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.85 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.84 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.83 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.83 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.82 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.82 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.81 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.79 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.78 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.77 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.77 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 98.77 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.77 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.76 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.75 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 98.74 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.74 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.73 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.71 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.7 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.69 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.67 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 98.66 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.66 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.64 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.63 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.62 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.61 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.59 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.59 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.58 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.57 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 98.57 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 98.56 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.56 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.56 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.56 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.52 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.5 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.5 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.49 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 98.46 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 98.45 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.44 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.44 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 98.42 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 98.41 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 98.4 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.39 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.38 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 98.36 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.33 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.33 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 98.33 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.32 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.32 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 98.32 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 98.31 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 98.31 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.3 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.3 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.3 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.28 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.26 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.25 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 98.24 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.21 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 98.21 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 98.2 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.19 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 98.19 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 98.18 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.18 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.17 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.11 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.11 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 98.09 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.06 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 98.03 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.02 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 98.02 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 98.0 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.99 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 97.98 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 97.98 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 97.98 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 97.92 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 97.89 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 97.88 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 97.84 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 97.8 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 97.8 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 97.79 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 97.71 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 97.69 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 97.62 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 97.59 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 97.55 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.51 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 97.47 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 97.39 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 97.29 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 97.28 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 97.23 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 97.21 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 97.2 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 97.19 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 97.18 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 97.15 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 97.14 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 97.08 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 97.06 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 97.05 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 97.05 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 97.01 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 96.99 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 96.98 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 96.96 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 96.95 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 96.82 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 96.76 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 96.66 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 96.56 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 96.49 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 96.45 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 96.38 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 96.21 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.16 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 95.87 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 95.81 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 95.75 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 95.66 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 95.63 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 95.57 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 95.54 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 95.51 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 95.4 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 95.35 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 95.24 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.19 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 95.14 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.09 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 95.08 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.07 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 94.89 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 94.75 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 94.7 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 94.68 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 94.62 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 94.59 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 94.4 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 94.28 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.21 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 94.14 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 93.88 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 93.88 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 93.62 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 93.44 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 93.28 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 93.06 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 92.78 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 92.65 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 92.58 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 92.37 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 92.31 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 92.23 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 92.05 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 91.97 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 91.6 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 91.42 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 91.42 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 91.36 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 91.2 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 91.03 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 90.52 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 90.5 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 90.37 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 89.61 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 89.58 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 89.57 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 89.42 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 89.06 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 88.69 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 88.08 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 87.95 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 87.92 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 87.88 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 87.61 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 87.1 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 87.06 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 86.75 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 86.38 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 86.18 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 86.11 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 85.61 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 85.36 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 85.23 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 84.93 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 84.58 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 84.35 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 84.25 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 84.01 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 83.95 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 83.63 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 83.52 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 83.42 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 83.06 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 83.01 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 82.91 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 82.91 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 82.63 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 82.58 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 82.54 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 81.76 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 81.59 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 81.57 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 81.37 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 81.1 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 80.7 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 80.46 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 80.43 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 80.19 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 80.05 |
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.94 E-value=8.8e-27 Score=261.87 Aligned_cols=162 Identities=22% Similarity=0.334 Sum_probs=134.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCC-----------------CC-CCccCcc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQ-----------------YG-LPVHSSM 69 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~-----------------~~-~~~~~~~ 69 (1129)
..++|||||||+|||+||+.|++++.+++|+||||++.+||+|.+....++.. .+ ....+.+
T Consensus 3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 82 (335)
T d2gv8a1 3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL 82 (335)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCccccccccccccccccccccccccc
Confidence 34799999999999999999999877789999999999999999876555410 00 1235789
Q ss_pred cccccccCCccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccC
Q psy12350 70 YKSLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRD 149 (1129)
Q Consensus 70 y~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~ 149 (1129)
|..+++++++.++.|++++++.. .+.|+++.++.+|++.|++.++ .+|+|||+|++|+.. .+.|.|++++...+
T Consensus 83 y~~l~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~~~yl~~~~~~~~--~~I~~~t~V~~v~~~---~~~w~Vt~~~~~~~ 156 (335)
T d2gv8a1 83 YRDLQTNTPIELMGYCDQSFKPQ-TLQFPHRHTIQEYQRIYAQPLL--PFIKLATDVLDIEKK---DGSWVVTYKGTKAG 156 (335)
T ss_dssp CTTCBCSSCHHHHSCTTCCCCTT-CCSSCBHHHHHHHHHHHHGGGG--GGEECSEEEEEEEEE---TTEEEEEEEESSTT
T ss_pred chhhhcCCcHhhhhhhhhcCCcc-cccCCchHHHHHHHHHHHHHhh--hcccCceEEEEEEec---CCEEEEEEEecCCC
Confidence 99999999999999999998865 5679999999999999999874 489999999999874 36788888776544
Q ss_pred c-cceEEecceeeeEEEEecccCCCCCccccc
Q psy12350 150 T-VGFYLFDLQVRFFLQLMQGHVTLPSKAEML 180 (1129)
Q Consensus 150 ~-~~~~~~d~~~~~~lvvAtG~~~~p~~p~i~ 180 (1129)
+ .....|| +||+|||+++.|++|.++
T Consensus 157 ~~~~~~~~d-----~VI~AtG~~s~p~~~~~~ 183 (335)
T d2gv8a1 157 SPISKDIFD-----AVSICNGHYEVPYTGYLY 183 (335)
T ss_dssp CCEEEEEES-----EEEECCCSSSSBCCCBCC
T ss_pred CeEEEEEee-----EEEEcccccccceecccc
Confidence 3 3345699 999999999999998763
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.84 E-value=1.5e-20 Score=210.57 Aligned_cols=249 Identities=23% Similarity=0.365 Sum_probs=163.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCC-------------------cccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLP-------------------VHSSMY 800 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p-------------------~~~~~y 800 (1129)
-.|+|||||++||++|+.|++++..++|+||||++.+||+|.+++++++.+ +++ ..+.+|
T Consensus 5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~y 83 (335)
T d2gv8a1 5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKL-PVPSTNPILTTEPIVGPAALPVYPSPLY 83 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCC-CSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCccc-CCcccccccccccccccccccccccccc
Confidence 458999999999999999998885579999999999999999999888633 111 124455
Q ss_pred CccccccccccccccCCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCcc
Q psy12350 801 KSLKTNLPKDLMELCGYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQS 880 (1129)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~S 880 (1129)
..+.++.++..+.|++++++.. .+.|+++.++.
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~~---------------------------------------------- 116 (335)
T d2gv8a1 84 RDLQTNTPIELMGYCDQSFKPQ-TLQFPHRHTIQ---------------------------------------------- 116 (335)
T ss_dssp TTCBCSSCHHHHSCTTCCCCTT-CCSSCBHHHHH----------------------------------------------
T ss_pred hhhhcCCcHhhhhhhhhcCCcc-cccCCchHHHH----------------------------------------------
Confidence 5555555665555555554443 33333332222
Q ss_pred HHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCCeeEEeC--Cc--EEecCC-
Q psy12350 881 GLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTP--TG--VRFQDG- 955 (1129)
Q Consensus 881 g~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~i~~v~~--~~--V~~~dG- 955 (1129)
..|... ++. +...|.+.+.|++++. +. |++.++
T Consensus 117 -----~yl~~~-----------------------~~~--------------~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~ 154 (335)
T d2gv8a1 117 -----EYQRIY-----------------------AQP--------------LLPFIKLATDVLDIEKKDGSWVVTYKGTK 154 (335)
T ss_dssp -----HHHHHH-----------------------HGG--------------GGGGEECSEEEEEEEEETTEEEEEEEESS
T ss_pred -----HHHHHH-----------------------HHH--------------hhhcccCceEEEEEEecCCEEEEEEEecC
Confidence 222110 000 0002222233333322 22 444332
Q ss_pred --c---EeeccEEEEccCccC--cCCCC-----------C-CCCCeeecCCcccccccceeecCCCCcEEEccccccchh
Q psy12350 956 --S---YEQVDIILCCTGYSN--HYPFL-----------H-ESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTLLF 1016 (1129)
Q Consensus 956 --~---~~~~D~VI~aTG~~~--~~~fl-----------~-~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~~~ 1016 (1129)
+ ...+|.||+|||... +.|.+ . .+..+..++....++|++++.+..|+|+|+|.+.....+
T Consensus 155 ~~~~~~~~~~d~VI~AtG~~s~p~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~ly~~~~~~~~p~l~f~G~~~~v~~~ 234 (335)
T d2gv8a1 155 AGSPISKDIFDAVSICNGHYEVPYTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPF 234 (335)
T ss_dssp TTCCEEEEEESEEEECCCSSSSBCCCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSSCHH
T ss_pred CCCeEEEEEeeEEEEcccccccceecccccCCCCcchhcccCccceeccccceeeeecccccCCCCceEEeeeEEEEecC
Confidence 2 346999999999753 22221 1 111122234556689999999999999999999888899
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCceecc-CCcHHHHHHHHHhc
Q psy12350 1017 NLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIG-HRSENFLNSIISMM 1081 (1129)
Q Consensus 1017 ~~~e~qa~~~a~~l~g~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~d~l~~~~ 1081 (1129)
+.+|.||.|++++++|+.+||+.++|.++..++...+.. ..+.+|.+. ..+..|+++|++.+
T Consensus 235 ~~~e~Qa~~~a~~~~g~~~Lps~~~m~~~~~~~~~~~~~---~~~~~~~~~~~~~~~y~~~L~~~~ 297 (335)
T d2gv8a1 235 PTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELMFSLSG---ANNMYHSLDYPKDATYINKLHDWC 297 (335)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHHHHHTT---CGGGTTBCTTTHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCccCCCcchhhhhhHHHHHhhcc---cCccceecCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999988776654422 223445443 35688999998765
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.76 E-value=4e-19 Score=193.12 Aligned_cols=147 Identities=20% Similarity=0.266 Sum_probs=113.9
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSG 86 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d 86 (1129)
.+..||+|||||+|||++|++|++ .|++|+||||++.+||+|.+.. |++++++++...+.++.
T Consensus 5 ~~~~dV~IIGAG~sGl~~a~~L~~--~G~~v~i~Ek~~~iGGtW~~n~---------------ypg~~~d~~~~~~~~s~ 67 (298)
T d1w4xa1 5 PEEVDVLVVGAGFSGLYALYRLRE--LGRSVHVIETAGDVGGVWYWNR---------------YPGARCDIESIEYCYSF 67 (298)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTHHHHCC---------------CTTCBCSSCTTTSSCCS
T ss_pred CCCCCEEEECccHHHHHHHHHHHh--CCCCEEEEEcCCCcccccccCC---------------CCCceeccccccccccc
Confidence 345799999999999999999999 6689999999999999998633 44455555555555554
Q ss_pred CCCC---CCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeE
Q psy12350 87 YHHK---GHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163 (1129)
Q Consensus 87 ~~~~---~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 163 (1129)
++.+ ......|++++++.+|+++|+++++|.++|+|||+|+++.... ..+.|++...+ .....+| +
T Consensus 68 ~~~~~~~~~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de-~~~~W~V~~~~-----~~~~~~~-----~ 136 (298)
T d1w4xa1 68 SEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDE-ATNTWTVDTNH-----GDRIRAR-----Y 136 (298)
T ss_dssp CHHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEET-TTTEEEEEETT-----CCEEEEE-----E
T ss_pred cccccCCCCCccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEec-CCCceeecccc-----ccccccc-----e
Confidence 4321 1224468899999999999999999999999999999987421 22446665432 2345678 9
Q ss_pred EEEecccCCCCCcccccc
Q psy12350 164 LQLMQGHVTLPSKAEMLA 181 (1129)
Q Consensus 164 lvvAtG~~~~p~~p~i~g 181 (1129)
||+|||..+.|..|.+|+
T Consensus 137 ~i~atG~ls~~~~p~~~~ 154 (298)
T d1w4xa1 137 LIMASGQLSDALTGALFK 154 (298)
T ss_dssp EEECCCSCCCCTTHHHHT
T ss_pred EEEeecccccccCCcccc
Confidence 999999999999998876
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.75 E-value=3.2e-19 Score=188.82 Aligned_cols=71 Identities=25% Similarity=0.517 Sum_probs=66.0
Q ss_pred CCCCCCCCCCCCcCCcEEecCCCC-CCCCCCCCeEEEEccCcchhhhHHHhhcccCeEEEEEEecceeeecc
Q psy12350 501 NPVYPDFKGKDVCQIPIMHSHEYR-TPEPFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLRFDNKTITKR 571 (1129)
Q Consensus 501 ~p~~p~~~g~~~f~g~v~hs~~~~-~~~~~~~k~v~ViG~g~sa~~~~~~l~~~~~~v~~~~r~~~~~~~~~ 571 (1129)
.|++|+|||++.|+|+++||++|+ +..+++||||+|||+|.||+|+|.++++.++++++++|++.++.+..
T Consensus 1 vP~iP~~pG~e~F~G~v~HS~~~~~~~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~~~~~~~ 72 (235)
T d1w4xa2 1 VPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPAR 72 (235)
T ss_dssp CCCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC
T ss_pred CCCCCCCCChhhCCCcEEecCcCCCCCCCCCCCEEEEECCCccHHHHHHHHHhhhccccccccccceeeeec
Confidence 489999999999999999999996 55789999999999999999999999999999999999999987653
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.67 E-value=4e-17 Score=172.38 Aligned_cols=64 Identities=25% Similarity=0.488 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCCCCCcEEeeccCC-CCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 839 HPIYPEFKGKDMCQIPILHSRDYR-TPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 839 ~P~~P~i~G~~~f~g~~~hs~~~~-~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
.|++|++||++.|+|.++||++|. +..+++||+|+|||+|+||+|+|.++++.+++++++.+..
T Consensus 1 vP~iP~~pG~e~F~G~v~HS~~~~~~~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~ 65 (235)
T d1w4xa2 1 VPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 65 (235)
T ss_dssp CCCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred CCCCCCCCChhhCCCcEEecCcCCCCCCCCCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence 499999999999999999999995 6678999999999999999999999999999988875543
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.66 E-value=4e-17 Score=177.13 Aligned_cols=257 Identities=15% Similarity=0.121 Sum_probs=162.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
-+++|||||++||++|++|++.| ++++||||++.+||+|.+++|||+.+ +.+...+.++..+.
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~G--~~v~i~Ek~~~iGGtW~~n~ypg~~~---------------d~~~~~~~~s~~~~ 70 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRELG--RSVHVIETAGDVGGVWYWNRYPGARC---------------DIESIEYCYSFSEE 70 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBC---------------SSCTTTSSCCSCHH
T ss_pred CCEEEECccHHHHHHHHHHHhCC--CCEEEEEcCCCcccccccCCCCCcee---------------cccccccccccccc
Confidence 46899999999999999999999 99999999999999999998888643 11111111111110
Q ss_pred C---CCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEE
Q psy12350 820 K---GNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAV 896 (1129)
Q Consensus 820 ~---~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~ 896 (1129)
. .++...| .++-|+...|.
T Consensus 71 ~~~~~~~~~~~---------------------------------------------------p~~~e~~~Yl~------- 92 (298)
T d1w4xa1 71 VLQEWNWTERY---------------------------------------------------ASQPEILRYIN------- 92 (298)
T ss_dssp HHHHCCCCBSS---------------------------------------------------CBHHHHHHHHH-------
T ss_pred ccCCCCCcccc---------------------------------------------------CccchHHHHHH-------
Confidence 0 0000001 12234444441
Q ss_pred EEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCCeeEEe--CC-c---EEecCCcEeeccEEEEccCcc
Q psy12350 897 VVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELT--PT-G---VRFQDGSYEQVDIILCCTGYS 970 (1129)
Q Consensus 897 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~i~~v~--~~-~---V~~~dG~~~~~D~VI~aTG~~ 970 (1129)
..+++. .+..+|++.+.|.++. ++ + |++.++.+..+|.||.|||+-
T Consensus 93 ----------------~~a~~~------------~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~l 144 (298)
T d1w4xa1 93 ----------------FVADKF------------DLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL 144 (298)
T ss_dssp ----------------HHHHHT------------TGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred ----------------HHHHHc------------CCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeeccc
Confidence 111111 0111455556666663 22 2 888899999999999999985
Q ss_pred Cc--CCCCCC-----CCCeeecCCcc--cccccceeecCCCCcEEEcccccc----chhHHHHHHHHHHHHHHc-----C
Q psy12350 971 NH--YPFLHE-----SCGIKVVNKNV--QPLYKHTINIEHPTMFILGVPRHT----LLFNLFDLQVRLFQQLMQ-----G 1032 (1129)
Q Consensus 971 ~~--~~fl~~-----~~g~~~~~~~~--~~ly~~~~~~~~p~l~~iG~~~~~----~~~~~~e~qa~~~a~~l~-----g 1032 (1129)
.. .|.+.. .-|..+.+.|. ...|.++..+++||+|++++|++. +....+|.|++|++++|. |
T Consensus 145 s~~~~p~~~~~~i~g~~g~~l~~~W~~~p~ty~G~~v~gfPN~f~~~Gp~s~~~~~~~~~~~e~q~~~i~~~i~~~~~~~ 224 (298)
T d1w4xa1 145 SDALTGALFKIDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMFKNG 224 (298)
T ss_dssp CCCTTHHHHTSEEECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCcccccccccCCCeeehhhchhhHHHHHHHhcCCCCeEEEecCCCCccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 43 222211 12344444443 258999999999999999998754 356889999999999875 5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeccCCcHHHHHHHHHhc--CCCCCCcHHHHHHHHchhhhhhhcCC
Q psy12350 1033 HITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGHRSENFLNSIISMM--RDESPLPPVLLKVYFDSYGQLTEDFI 1107 (1129)
Q Consensus 1033 ~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~d~l~~~~--g~~~~~p~~~~~~~~~~~~~~~~~~~ 1107 (1129)
...+.++++++++|.++.++..++. .+ . .|.+|+..--.+. .....||+-...+......++.+++.
T Consensus 225 ~~~ve~~~~a~~~~~~~~~~~~~~t----v~---~-~~~swy~~~n~~gk~~~~~~~~gg~~~y~~~l~~~~~~~~~ 293 (298)
T d1w4xa1 225 LTRSEAVLEKEDEWVEHVNEIADET----LY---P-MTASWYTGANVPGKPRVFMLYVGGFHRYRQICDEVAAKGYE 293 (298)
T ss_dssp CCCEEECHHHHHHHHHHHHHHHTTS----SG---G-GCGGGSSSCCCTTSCCCCSSCCSCHHHHHHHHHHHHHTTST
T ss_pred CCEEEechHHHHHHHHHHHHHHhcc----Cc---c-cCCcCccCCCCCCCcceEecCCCCHHHHHHHHHHHHHcCCC
Confidence 5677888899999999888776542 11 1 3455543100011 11225776666666666666666654
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.60 E-value=3.2e-16 Score=141.46 Aligned_cols=100 Identities=25% Similarity=0.462 Sum_probs=81.5
Q ss_pred CCCCCCCCCC----CCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccE
Q psy12350 842 YPEFKGKDMC----QIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRAST 917 (1129)
Q Consensus 842 ~P~i~G~~~f----~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~ 917 (1129)
+|++||+++| +|.++||+.|+++.+|+||+|+|||+|+||+|+|.+|++.+++++++.+.....
T Consensus 1 iP~ipGl~~f~~~~~G~i~Hs~~y~~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~------------ 68 (107)
T d2gv8a2 1 IPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD------------ 68 (107)
T ss_dssp BCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS------------
T ss_pred CcCCCChHHHhccCCccEEECCcCcchhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccc------------
Confidence 5889998765 599999999999999999999999999999999999999998887765532100
Q ss_pred EEEecCCccccccCCCCCeEEcCCeeEEeCCc--EEecCCcEe-eccEEEEc
Q psy12350 918 VFLSHHSERVTSLCLPNNVVLKPDVAELTPTG--VRFQDGSYE-QVDIILCC 966 (1129)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~V~~~~~i~~v~~~~--V~~~dG~~~-~~D~VI~a 966 (1129)
..+.++...+.|.+++..+ +.|.||+.+ .+|.||+|
T Consensus 69 -------------~~~~~~~~~~~i~~~~~~~~~v~~~dG~~~~~vD~Ii~C 107 (107)
T d2gv8a2 69 -------------IQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYC 107 (107)
T ss_dssp -------------CBCSSEEEECCEEEEETTTTEEEETTTEEECCCSEEEEC
T ss_pred -------------cccccceecCCeeEEecCCCEEEEcCCCEEeCCCEEEEC
Confidence 0122566667788887654 999999998 48999998
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=3.5e-16 Score=153.99 Aligned_cols=104 Identities=18% Similarity=0.248 Sum_probs=80.1
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSG 86 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d 86 (1129)
..+++|+|||||||||+||..|++ .|++|+||||.+.+||.+.+...
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la~--~G~~Vtl~E~~~~~GG~l~~~~~------------------------------- 87 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAAA--RGHQVTLFDAHSEIGGQFNIAKQ------------------------------- 87 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSCTTHHHHTT-------------------------------
T ss_pred CCCcEEEEECccHHHHHHHHHHHh--hccceEEEeccCccCceEEEEEe-------------------------------
Confidence 456899999999999999999999 66999999999999998773100
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
.+.+....++.+|+...++++++ ++++|++|+.- ....|| +||+
T Consensus 88 -------~p~~~~~~~~~~~~~~~~~~~gV--~i~l~~~Vt~~----------------------~~~~~d-----~vil 131 (179)
T d1ps9a3 88 -------IPGKEEFYETLRYYRRMIEVTGV--TLKLNHTVTAD----------------------QLQAFD-----ETIL 131 (179)
T ss_dssp -------STTCTTHHHHHHHHHHHHHHHTC--EEEESCCCCSS----------------------SSCCSS-----EEEE
T ss_pred -------CcccchHHHHHHHHHHhhhcCCe--EEEeCCEEccc----------------------ccccce-----eEEE
Confidence 11233456888999999999887 89999988521 112488 9999
Q ss_pred ecccCCCCCcccccc
Q psy12350 167 MQGHVTLPSKAEMLA 181 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g 181 (1129)
||| ..|+.+.+|+
T Consensus 132 AtG--~~~~~~~~pg 144 (179)
T d1ps9a3 132 ASG--IPNRALAQPL 144 (179)
T ss_dssp CCC--EECCTTHHHH
T ss_pred eec--CCCcccccch
Confidence 999 5666665543
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.52 E-value=4.4e-15 Score=133.88 Aligned_cols=61 Identities=28% Similarity=0.438 Sum_probs=56.0
Q ss_pred CCCCCCCCCcC----CcEEecCCCCCCCCCCCCeEEEEccCcchhhhHHHhhcccCeEEEEEEec
Q psy12350 504 YPDFKGKDVCQ----IPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLRFD 564 (1129)
Q Consensus 504 ~p~~~g~~~f~----g~v~hs~~~~~~~~~~~k~v~ViG~g~sa~~~~~~l~~~~~~v~~~~r~~ 564 (1129)
+|++||+++|+ |+++||+.|++..+++||+|+|||+|+||+|+|.+|++.+++++++.|++
T Consensus 1 iP~ipGl~~f~~~~~G~i~Hs~~y~~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 1 IPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp BCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred CcCCCChHHHhccCCccEEECCcCcchhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence 68999987765 99999999999999999999999999999999999999999998877754
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.49 E-value=8e-16 Score=161.58 Aligned_cols=44 Identities=25% Similarity=0.458 Sum_probs=40.6
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
...++|+|||||||||+||..|++ .|++|+|||+++.+||.|.+
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~--~G~~v~l~E~~~~~GG~~~~ 90 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLME--SGYTVHLTDTAEKIGGHLNQ 90 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSTTTTHHH
T ss_pred cCCceEEEEcccHHHHHHHHHHHH--hccceeeEeeccccCCcccc
Confidence 356899999999999999999999 67999999999999999984
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.35 E-value=1.6e-13 Score=126.17 Aligned_cols=112 Identities=20% Similarity=0.308 Sum_probs=81.7
Q ss_pred CCCCCCCCCCCCcEEeeccCCCCC-----CCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCcc-c-hhhhhcc
Q psy12350 842 YPEFKGKDMCQIPILHSRDYRTPE-----PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD-I-TLDIATR 914 (1129)
Q Consensus 842 ~P~i~G~~~f~g~~~hs~~~~~~~-----~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~-~-~~~~~~~ 914 (1129)
+|++||.+. .++..++..+.. --.+|+|+|||||.+|+|+|..|++.|.+||++++.+..++ . .+.....
T Consensus 1 iP~ipG~~~---~v~~lrtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~ 77 (121)
T d1d7ya2 1 LPTLQGATM---PVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADF 77 (121)
T ss_dssp CGGGTTCSS---CEEECCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHH
T ss_pred CccCCCCCC---CEEEeCCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHH
Confidence 589999875 343333332221 12479999999999999999999999999999999887664 2 3333333
Q ss_pred ccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCcEEecCCcEeeccEEEEccC
Q psy12350 915 ASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTGVRFQDGSYEQVDIILCCTG 968 (1129)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~V~~~dG~~~~~D~VI~aTG 968 (1129)
..+.+. ..+|+++.+ ++++.++.|+++||+++++|.||+|+|
T Consensus 78 ~~~~l~------------~~GV~i~~~~~v~~~~~~~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 78 VARYHA------------AQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp HHHHHH------------TTTCEEEESCCEEEEETTEEEETTSCEEECSEEEECSC
T ss_pred HHHHHH------------HCCcEEEeCCEEEEEeCCEEEECCCCEEECCEEEEeeC
Confidence 322211 125666544 999999999999999999999999998
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.32 E-value=9.5e-14 Score=128.47 Aligned_cols=114 Identities=18% Similarity=0.374 Sum_probs=84.8
Q ss_pred CCCCCCCCCCCCCCCcEEeeccCCCCCCC-----CCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhc
Q psy12350 839 HPIYPEFKGKDMCQIPILHSRDYRTPEPF-----AGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIAT 913 (1129)
Q Consensus 839 ~P~~P~i~G~~~f~g~~~hs~~~~~~~~~-----~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~ 913 (1129)
+|+.|++||.+ .++++.+..+.+.+ .+|+|+|||||.+|+|+|..|++.|.+||++++++..+++.+.+..
T Consensus 1 R~r~p~ipG~e----~~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~ 76 (122)
T d1xhca2 1 RAREPQIKGKE----YLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSN 76 (122)
T ss_dssp EECCCCSBTGG----GEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHH
T ss_pred CCCCcCCCCcc----ceEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccCCCHHHHH
Confidence 47899999975 35555544332221 3689999999999999999999999999999998877666554444
Q ss_pred cccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCcEEecCCcEeeccEEEEccCc
Q psy12350 914 RASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTGVRFQDGSYEQVDIILCCTGY 969 (1129)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~V~~~dG~~~~~D~VI~aTG~ 969 (1129)
...+.+.. .+|+++.+ +.+++++++ +.+++.+++|.||+|||.
T Consensus 77 ~~~~~l~~------------~GV~~~~~~~v~~~~~~~v-~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 77 MIKDMLEE------------TGVKFFLNSELLEANEEGV-LTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp HHHHHHHH------------TTEEEECSCCEEEECSSEE-EETTEEEECSCEEEECCE
T ss_pred HHHHHHHH------------CCcEEEeCCEEEEEeCCEE-EeCCCEEECCEEEEEEEe
Confidence 33322111 26777665 899988876 557788999999999994
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.27 E-value=2.1e-12 Score=127.44 Aligned_cols=154 Identities=12% Similarity=0.137 Sum_probs=99.7
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEec----CCccccccCCCCCeEEcC--CeeE
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSH----HSERVTSLCLPNNVVLKP--DVAE 944 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~V~~~~--~i~~ 944 (1129)
||+|||||.+|+|+|..|++ +.+||++++.+......+.+........... .....+. ..+++++. .+++
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~v~~ 77 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYR---KRGIEIRLAEEAKL 77 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHH---HHTEEEECSCCEEE
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHH---hccceeeeeccccc
Confidence 79999999999999999975 6799999876543222111111111000000 0000000 12455554 3888
Q ss_pred EeCC-cEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----chhHH
Q psy12350 945 LTPT-GVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----LLFNL 1018 (1129)
Q Consensus 945 v~~~-~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----~~~~~ 1018 (1129)
++.+ .+.+.+|.++++|.+|+|+|..++ +++. ..|++.++....+.+ +.++.|++|++|++... ...+.
T Consensus 78 i~~~~~~~~~~~~~i~~D~li~a~G~~~~-~~~~-~~gl~~~~~i~v~~~---~~t~~~~i~aiGD~~~~~~~~~~~~~~ 152 (167)
T d1xhca1 78 IDRGRKVVITEKGEVPYDTLVLATGAPNV-DLAR-RSGIHTGRGILIDDN---FRTSAKDVYAIGDCAEYSGIIAGTAKA 152 (167)
T ss_dssp EETTTTEEEESSCEEECSEEEECCCEECC-HHHH-HTTCCBSSSEECCTT---SBCSSTTEEECGGGEEBTTBCCCSHHH
T ss_pred cccccccccccccccccceeEEEEEecCC-chhh-hcCceeCCceeeccc---cEecCCCeEEeeecccCCCeEEChHHH
Confidence 8654 478888989999999999999875 4443 356666543222223 34589999999998543 24578
Q ss_pred HHHHHHHHHHHHcCC
Q psy12350 1019 FDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1019 ~e~qa~~~a~~l~g~ 1033 (1129)
+..||+.+|++|.|+
T Consensus 153 a~~~a~~~a~~i~Ge 167 (167)
T d1xhca1 153 AMEQARVLADILKGE 167 (167)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999999874
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=1.5e-13 Score=142.35 Aligned_cols=41 Identities=34% Similarity=0.628 Sum_probs=37.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
++||+||||||||++||.+|++ .|.+|+|+|+ +.+||+|.+
T Consensus 2 ~yDvvVIG~G~aG~~aA~~a~~--~G~kV~iiE~-~~~GGtc~~ 42 (217)
T d1gesa1 2 HYDYIAIGGGSGGIASINRAAM--YGQKCALIEA-KELGGTCVN 42 (217)
T ss_dssp EEEEEEECCSHHHHHHHHHHHT--TTCCEEEEES-SCTTHHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCEEEEEec-cCcCCeEec
Confidence 5899999999999999999999 6799999999 569999974
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.21 E-value=1.2e-11 Score=123.84 Aligned_cols=157 Identities=12% Similarity=0.103 Sum_probs=98.5
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCc-cch-hhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEE
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGL-DIT-LDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAEL 945 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v 945 (1129)
++|+|||||.+|+|+|..|.+.+.+++++....... ++. +.+................+ ....+|+++.+ ++++
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~v~~i 81 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDC--KRAPEVEWLLGVTAQSF 81 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCG--GGSTTCEEEETCCEEEE
T ss_pred CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHH--hhcCCeEEEEecccccc
Confidence 459999999999999999999998877765433222 111 11110000000000000000 11225666544 8888
Q ss_pred eCC--cEEecCCcEeeccEEEEccCccCcCCCCCC----CCCeeecCCcccccccceeecCCCCcEEEcccccc------
Q psy12350 946 TPT--GVRFQDGSYEQVDIILCCTGYSNHYPFLHE----SCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT------ 1013 (1129)
Q Consensus 946 ~~~--~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~----~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~------ 1013 (1129)
+.+ .+.++||+++++|.||+|||..|+..++.. ..++..++.- .+..+ +.++.|+||++|++...
T Consensus 82 ~~~~~~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~~~I--~vd~~-~~ts~~~IyA~GD~a~~~~~~~g 158 (183)
T d1d7ya1 82 DPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACDDGI--FVDAY-GRTTCPDVYALGDVTRQRNPLSG 158 (183)
T ss_dssp ETTTTEEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBSSSE--ECCTT-CBCSSTTEEECGGGEEEECTTTC
T ss_pred ccccceeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEeeCCcE--Eeccc-eeccccccchhhhhhccceeeCC
Confidence 654 588999999999999999999998655442 2344544332 23222 23589999999998531
Q ss_pred -----chhHHHHHHHHHHHHHHc
Q psy12350 1014 -----LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1014 -----~~~~~~e~qa~~~a~~l~ 1031 (1129)
..+..+..||+.+|++|.
T Consensus 159 ~~~~~~~~~~A~~qg~~aa~nil 181 (183)
T d1d7ya1 159 RFERIETWSNAQNQGIAVARHLV 181 (183)
T ss_dssp SEEECCCHHHHHHHHHHHHHHHH
T ss_pred ceechhHHHHHHHHHHHHHHHHc
Confidence 246789999999999874
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.21 E-value=9.2e-12 Score=125.06 Aligned_cols=163 Identities=17% Similarity=0.166 Sum_probs=99.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc---hhhhhccccEEEEecCCccccc-cCCCCCeEEcC--C
Q psy12350 868 AGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI---TLDIATRASTVFLSHHSERVTS-LCLPNNVVLKP--D 941 (1129)
Q Consensus 868 ~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~~~--~ 941 (1129)
++++|||||||++|+|+|.+|++.+.+|+++......... .+.................... ......+.+.. .
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ 81 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence 3689999999999999999999999998887554322110 0000000000000000000000 00001233332 2
Q ss_pred eeEEeCC--cEEecCCcEeeccEEEEccCccCcCCCCC--CCCCeeecCCcccccccceeecCCCCcEEEcccccc----
Q psy12350 942 VAELTPT--GVRFQDGSYEQVDIILCCTGYSNHYPFLH--ESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT---- 1013 (1129)
Q Consensus 942 i~~v~~~--~V~~~dG~~~~~D~VI~aTG~~~~~~fl~--~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~---- 1013 (1129)
+..++.+ .+.+.++.++++|.+|+++|.++..|.+. +..++..++....+.+ +.++.|++|++|++...
T Consensus 82 ~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~~~i~Vd~~---~~ts~~~vya~GD~~~~~~~~ 158 (185)
T d1q1ra1 82 VTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVDNGIVINEH---MQTSDPLIMAVGDCARFHSQL 158 (185)
T ss_dssp EEEEETTTTEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBSSSEECCTT---SBCSSTTEEECGGGEEEEETT
T ss_pred eeeecccccEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccccCccccCCc---cccchhhhhcchhhhcccccc
Confidence 4455443 48888999999999999999988655443 2345555443332333 34589999999997532
Q ss_pred -------chhHHHHHHHHHHHHHHcCC
Q psy12350 1014 -------LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1014 -------~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
..++.+..||+.+|+.|.|+
T Consensus 159 ~~~~~~~~~a~~A~~~g~~aa~~i~G~ 185 (185)
T d1q1ra1 159 YDRWVRIESVPNALEQARKIAAILCGK 185 (185)
T ss_dssp TTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred CCcccchhhHHHHHHHHHHHHHHccCC
Confidence 25789999999999999986
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.18 E-value=1.6e-13 Score=146.32 Aligned_cols=40 Identities=35% Similarity=0.630 Sum_probs=37.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
+||+||||||||+.||.++++ .|.+|+|+|+ +.+||+|.+
T Consensus 2 yDviVIG~G~aG~~aA~~aa~--~G~~V~liE~-~~~GGtc~n 41 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAAR--HNAKVALVEK-SRLGGTCVN 41 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHH--TTCCEEEEES-SSTTHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHH--CCCeEEEEec-CCCCCeEEe
Confidence 799999999999999999999 6799999999 569999984
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=6e-12 Score=114.90 Aligned_cols=108 Identities=18% Similarity=0.248 Sum_probs=76.5
Q ss_pred CCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccch-hhhhccccEEEEec
Q psy12350 844 EFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDIT-LDIATRASTVFLSH 922 (1129)
Q Consensus 844 ~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~-~~~~~~~~~~~~~~ 922 (1129)
++||.+. .+++.+..+...+ .|+|+|||+|++|+|+|..|++.|.+||+++++++.++.. +.+.....+.+..
T Consensus 1 diPG~e~----~~t~~~~~~l~~~-p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~- 74 (116)
T d1gesa2 1 DIPGVEY----GIDSDGFFALPAL-PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNA- 74 (116)
T ss_dssp CSTTGGG----SBCHHHHHHCSSC-CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHH-
T ss_pred CcCCccc----cCCHHHHhChhhC-CCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHH-
Confidence 4678752 3455554444443 6899999999999999999999999999999988766442 2222222211111
Q ss_pred CCccccccCCCCCeEEcCC--eeEEeCC-----cEEecCCcEeeccEEEEccC
Q psy12350 923 HSERVTSLCLPNNVVLKPD--VAELTPT-----GVRFQDGSYEQVDIILCCTG 968 (1129)
Q Consensus 923 ~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~~~dG~~~~~D~VI~aTG 968 (1129)
.+|+++.+ ++++..+ .++++||+++++|.||+|||
T Consensus 75 -----------~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 75 -----------EGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp -----------HSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred -----------CCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence 15666655 7777543 27789999999999999998
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.16 E-value=1.5e-11 Score=112.04 Aligned_cols=108 Identities=19% Similarity=0.329 Sum_probs=79.2
Q ss_pred CCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEE
Q psy12350 842 YPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFL 920 (1129)
Q Consensus 842 ~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~ 920 (1129)
+|++||++. ++.+.++.+..+ .|+|+|||||.+|+|+|..|++.|.+||++++++..++. .+.+.....+.+.
T Consensus 1 ~P~IpG~e~----~~ts~~~~~l~~--p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~ 74 (117)
T d1onfa2 1 FPPVKGIEN----TISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMK 74 (117)
T ss_dssp CCSCTTGGG----CEEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHH
T ss_pred CcccCCHhH----cCchhHHhccCC--CCEEEEECCchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHH
Confidence 589999863 567776665544 699999999999999999999999999999998776543 2333333332222
Q ss_pred ecCCccccccCCCCCeEEcCC--eeEEeC--Cc---EEecCCcEe-eccEEEEcc
Q psy12350 921 SHHSERVTSLCLPNNVVLKPD--VAELTP--TG---VRFQDGSYE-QVDIILCCT 967 (1129)
Q Consensus 921 ~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~~---V~~~dG~~~-~~D~VI~aT 967 (1129)
. .+|+++.+ +++++. ++ ++++||+.+ .+|.||||.
T Consensus 75 ~------------~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 75 K------------NNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp H------------TTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred h------------CCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence 2 15666654 888853 33 788999987 579999984
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.14 E-value=5.6e-11 Score=118.97 Aligned_cols=158 Identities=13% Similarity=0.103 Sum_probs=97.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhcC--CEEEEEecCCCCccc--hhhhhcc---ccEEEEecCCccccccCCCCCeEEcC
Q psy12350 868 AGKQAVVVGSGQSGLDITLDIATTG--KQAVVVGSGQSGLDI--TLDIATR---ASTVFLSHHSERVTSLCLPNNVVLKP 940 (1129)
Q Consensus 868 ~gk~VvVVG~G~Sg~eiA~~la~~~--~~V~vv~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~V~~~~ 940 (1129)
.||||+|||||.+|+|+|..|.+.+ .+||++++.+..... ....... ......... . .....+....
T Consensus 1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~v~~~~ 74 (186)
T d1fcda1 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYD---G---LRAHGIQVVH 74 (186)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSH---H---HHTTTEEEEC
T ss_pred CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhh---h---ccccceeEee
Confidence 4899999999999999999999987 489999876543211 1100000 000000000 0 0112444443
Q ss_pred C-eeEEeC--CcEEecCCcEeeccEEEEccCccCcCCCCCCCC-------CeeecCCcccccccceeecCCCCcEEEccc
Q psy12350 941 D-VAELTP--TGVRFQDGSYEQVDIILCCTGYSNHYPFLHESC-------GIKVVNKNVQPLYKHTINIEHPTMFILGVP 1010 (1129)
Q Consensus 941 ~-i~~v~~--~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~-------g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~ 1010 (1129)
. +..... ..+.+.+++++++|.+|+|||.+++.+++.... ++..+..+..........++.|++|++|+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~ 154 (186)
T d1fcda1 75 DSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDA 154 (186)
T ss_dssp CCEEECCTTTTEEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTS
T ss_pred eeeEeeeeccceeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceEeccc
Confidence 3 444433 337788999999999999999999988776311 222333332212222334678999999997
Q ss_pred cccc----hhHHHHHHHHHHHHHHc
Q psy12350 1011 RHTL----LFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1011 ~~~~----~~~~~e~qa~~~a~~l~ 1031 (1129)
.... ....+..||+.+|+.+.
T Consensus 155 ~~~~~~p~~~~~A~~q~~~~A~ni~ 179 (186)
T d1fcda1 155 SIANPMPKSGYSANSQGKVAAAAVV 179 (186)
T ss_dssp EECTTCCSSHHHHHHHHHHHHHHHH
T ss_pred cccCCCCchHhHHHHHHHHHHHHHH
Confidence 6432 25778889988888764
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.09 E-value=4.5e-11 Score=126.46 Aligned_cols=155 Identities=16% Similarity=0.209 Sum_probs=88.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc--------eEecCCCCCC-CCCCCCccCcccccccccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG--------TWVYTEQTGR-DQYGLPVHSSMYKSLKTNLP 78 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG--------~w~~~~~~~~-~~~~~~~~~~~y~~l~~~~~ 78 (1129)
+.+||+|||||||||.||..|++ .|++|+||||++.+|+ .|+..+.... ..+-......++..+....+
T Consensus 3 ~~~DViIIGaG~aGl~aA~~la~--~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (253)
T d2gqfa1 3 QYSENIIIGAGAAGLFCAAQLAK--LGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTN 80 (253)
T ss_dssp EECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCH
T ss_pred CCCcEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcc
Confidence 45799999999999999999999 6699999999999873 3432221110 00000000001111111111
Q ss_pred cccccc---CCCCCCCCCCC-CCC--CHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccc
Q psy12350 79 KEIMEL---SGYHHKGHPDK-SYI--AANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVG 152 (1129)
Q Consensus 79 ~~~~~~---~d~~~~~~~~~-~~~--~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (1129)
.....+ ...++...... .|+ ...++.+.+...+++.++ .|+++++|+.+.+.. +.+.+......+ ..
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV--~i~~~~~V~~i~~~~---~~~~v~~~~~~~--~~ 153 (253)
T d2gqfa1 81 WDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGA--KILLRSEVSQVERIQ---NDEKVRFVLQVN--ST 153 (253)
T ss_dssp HHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTC--EEECSCCEEEEEECC---SCSSCCEEEEET--TE
T ss_pred cchhhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCC--CeecCceEEEEEeec---CCceeEEEEecC--CE
Confidence 111000 01111111011 111 456788999999999887 899999999987632 344443322122 23
Q ss_pred eEEecceeeeEEEEecccCCCCCc
Q psy12350 153 FYLFDLQVRFFLQLMQGHVTLPSK 176 (1129)
Q Consensus 153 ~~~~d~~~~~~lvvAtG~~~~p~~ 176 (1129)
.+..| +||+|||..+-|++
T Consensus 154 ~~~a~-----~VIiAtGG~S~p~~ 172 (253)
T d2gqfa1 154 QWQCK-----NLIVATGGLSMPGL 172 (253)
T ss_dssp EEEES-----EEEECCCCSSCGGG
T ss_pred EEEeC-----EEEEcCCccccccc
Confidence 45667 99999997665543
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.07 E-value=3.7e-12 Score=133.89 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=39.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCC-----CCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPG-----SGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~-----~~~~v~v~E~~~~~GG~w~~ 52 (1129)
++||+|||||||||+||.+|++.| .+++|+||||.+.+||+|.+
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~ 50 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRS 50 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHH
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeee
Confidence 479999999999999999999854 34689999999999999985
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.06 E-value=6.4e-11 Score=108.94 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=79.0
Q ss_pred CCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccch-hhhhccccEE
Q psy12350 840 PIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDIT-LDIATRASTV 918 (1129)
Q Consensus 840 P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~-~~~~~~~~~~ 918 (1129)
|++|.+|+. .+++.|.+..+.... +|+++|||||.+|+|+|..+++.|.+||++++++..++.. +.+.....+.
T Consensus 2 ~~lP~ip~~----~~i~ts~~~l~l~~~-p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~ 76 (125)
T d1ojta2 2 TKLPFIPED----PRIIDSSGALALKEV-PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQ 76 (125)
T ss_dssp CCCSSCCCC----TTEECHHHHTTCCCC-CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHH
T ss_pred CCCCCCCCC----CcEEcHHHhhCcccc-CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHH
Confidence 566666653 357888877766555 6999999999999999999999999999999988766542 2333222222
Q ss_pred EEecCCccccccCCCCCeEEcCC--eeEEe--CCc--EEec--CC--cEeeccEEEEccCc
Q psy12350 919 FLSHHSERVTSLCLPNNVVLKPD--VAELT--PTG--VRFQ--DG--SYEQVDIILCCTGY 969 (1129)
Q Consensus 919 ~~~~~~~~~~~~~~~~~V~~~~~--i~~v~--~~~--V~~~--dG--~~~~~D~VI~aTG~ 969 (1129)
+.. .+|++..+ +++++ +++ |.+. +| +++++|.||+|+|+
T Consensus 77 l~~------------~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR 125 (125)
T d1ojta2 77 NEY------------RFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR 125 (125)
T ss_dssp HGG------------GEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred HHH------------cCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence 111 15666655 77775 333 4443 33 36899999999995
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=3e-10 Score=116.14 Aligned_cols=163 Identities=13% Similarity=0.120 Sum_probs=102.4
Q ss_pred CeEEEEcCCccHHHHHHHHHhcC--CEEEEEecCCCCccchhhhhc------------------cc-cEEEEecCCcc--
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTG--KQAVVVGSGQSGLDITLDIAT------------------RA-STVFLSHHSER-- 926 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~--~~V~vv~~~~~~~~~~~~~~~------------------~~-~~~~~~~~~~~-- 926 (1129)
+++||||+|.+|+++|..|.+.+ .+|+++.+.+...-..+.+.. .. ....+...-.+
T Consensus 5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (213)
T d1m6ia1 5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY 84 (213)
T ss_dssp EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGS
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhhh
Confidence 46899999999999999998765 579998764322100000000 00 00000000000
Q ss_pred ----ccccCCCCCeEEcCC--eeEEeC--CcEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCC-ccccccccee
Q psy12350 927 ----VTSLCLPNNVVLKPD--VAELTP--TGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNK-NVQPLYKHTI 997 (1129)
Q Consensus 927 ----~~~~~~~~~V~~~~~--i~~v~~--~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~-~~~~ly~~~~ 997 (1129)
........+|+++.+ |++++. +.|+++||+++++|.+|+|||-.+..+.+....|++++.. ....+..++
T Consensus 85 ~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~vd~~l- 163 (213)
T d1m6ia1 85 VSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAEL- 163 (213)
T ss_dssp BCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEECCTTC-
T ss_pred hhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhhhHhc-
Confidence 001111236777654 899964 4699999999999999999998776555554456665432 222333333
Q ss_pred ecCCCCcEEEcccccc----------chhHHHHHHHHHHHHHHcCCC
Q psy12350 998 NIEHPTMFILGVPRHT----------LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 998 ~~~~p~l~~iG~~~~~----------~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
.++ |+||++|++... ..++.+..||+.+++++.|..
T Consensus 164 ~~~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~g~~ 209 (213)
T d1m6ia1 164 QAR-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAA 209 (213)
T ss_dssp EEE-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred CcC-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhcCCC
Confidence 234 899999998532 246889999999999999865
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.00 E-value=9.5e-11 Score=107.28 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=63.9
Q ss_pred CCCCCCcccchhhhcccccEEEEccccCCcccccCCC---------------CeEEcCCceEEcCCceEEcCCCEeecCE
Q psy12350 265 AANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------------NVVKKPDIAELTPTGVRFQDGSYEQVDI 329 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------------~i~~~~~v~~~~~~~v~~~dg~~~~~D~ 329 (1129)
||||++|+|+|..|++.|.+||++++++++++..++. ++..+..|+++.++.|+++||+++++|.
T Consensus 36 IGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~~~~~~v~l~dg~~i~~D~ 115 (121)
T d1d7ya2 36 VGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADM 115 (121)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEETTEEEETTSCEEECSE
T ss_pred ECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCCEEEECCCCEEECCE
Confidence 8999999999999999999999999999887644332 4677888999998899999999999999
Q ss_pred EEEccc
Q psy12350 330 ILYCTG 335 (1129)
Q Consensus 330 VI~atG 335 (1129)
||+|+|
T Consensus 116 vi~a~G 121 (121)
T d1d7ya2 116 VVVGIG 121 (121)
T ss_dssp EEECSC
T ss_pred EEEeeC
Confidence 999998
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=98.98 E-value=1.7e-10 Score=105.52 Aligned_cols=101 Identities=18% Similarity=0.241 Sum_probs=71.6
Q ss_pred EeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhc---CCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccC
Q psy12350 856 LHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATT---GKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLC 931 (1129)
Q Consensus 856 ~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~---~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1129)
+.|.+..+.... +|+|+|||||.+|+|+|..+++. |.+|+++++++..++. .+.+.....+.+..
T Consensus 6 ~ts~~~~~l~~~-p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~---------- 74 (117)
T d1feca2 6 ITSNEAFYLDEA-PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRA---------- 74 (117)
T ss_dssp BCHHHHTTCSSC-CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHH----------
T ss_pred EchHHhhCcccc-CCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhh----------
Confidence 445544444443 69999999999999999877654 8899999998776653 23333333322211
Q ss_pred CCCCeEEcCC--eeEEeCC-----cEEecCCcEeeccEEEEccCc
Q psy12350 932 LPNNVVLKPD--VAELTPT-----GVRFQDGSYEQVDIILCCTGY 969 (1129)
Q Consensus 932 ~~~~V~~~~~--i~~v~~~-----~V~~~dG~~~~~D~VI~aTG~ 969 (1129)
.+|+++.+ +++++.+ .+.++||+++++|.||+|||+
T Consensus 75 --~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~GR 117 (117)
T d1feca2 75 --NGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR 117 (117)
T ss_dssp --TTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred --CcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecCC
Confidence 15666654 8888642 288999999999999999995
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.98 E-value=3.8e-10 Score=119.71 Aligned_cols=178 Identities=11% Similarity=0.035 Sum_probs=110.6
Q ss_pred CcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc------hh------------hhhcc
Q psy12350 853 IPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI------TL------------DIATR 914 (1129)
Q Consensus 853 g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~------~~------------~~~~~ 914 (1129)
++++...+..+..+| .|+|||+|++|+++|..+++.|.+|+++++.+..-.. .| .....
T Consensus 29 ~~~~~~~~~~~~k~y---DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~ 105 (261)
T d1mo9a1 29 GEVIYNVDENDPREY---DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTF 105 (261)
T ss_dssp CCEEEECCTTCCSCB---SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHT
T ss_pred CceEecCCCCCCccC---CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHh
Confidence 456666555544444 6999999999999999999999999999886542100 00 00000
Q ss_pred ccEEEEe---cCC---cc---cc-------------cc-CCCCCeEEcCCeeEEeCCcEEecCCcEeeccEEEEccCccC
Q psy12350 915 ASTVFLS---HHS---ER---VT-------------SL-CLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYSN 971 (1129)
Q Consensus 915 ~~~~~~~---~~~---~~---~~-------------~~-~~~~~V~~~~~i~~v~~~~V~~~dG~~~~~D~VI~aTG~~~ 971 (1129)
....... ... .. .+ .. .....+.+...-.++.+......+|+++++|.||+|||.+|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~v~~~g~~i~ad~viiAtG~~P 185 (261)
T d1mo9a1 106 SGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGP 185 (261)
T ss_dssp TTSTTCCCCTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEETTEEEEBSCEEECCCEEC
T ss_pred hhhccccccccccccHHHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEeeecccccccceEeeeeeeeccCCCC
Confidence 0000000 000 00 00 00 00011222222223333333345788899999999999999
Q ss_pred cCCCCCCC---------CCeeecCCcccccccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCCC
Q psy12350 972 HYPFLHES---------CGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 972 ~~~fl~~~---------~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
+.+.+..+ +|+++++++...+..+ +.++.|+||++|++... ...+.+..|++.+|..+.|+.
T Consensus 186 ~~~~i~~~~~~~~l~~~~Gl~~~~~G~I~Vn~~-~~Ts~~~IyA~GDv~~~~~l~~~A~~~G~~aa~~i~G~k 257 (261)
T d1mo9a1 186 GTLDVPEQPRSAELAKILGLDLGPKGEVLVNEY-LQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGEK 257 (261)
T ss_dssp CCCCSTCEECCHHHHHHHTCCBCTTSCBCCCTT-SBCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHTTCC
T ss_pred CcCcccccccccccccceeeeeccCCEEEeCCC-cccCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHCCCC
Confidence 98877531 4677777765544433 45689999999998765 356889999999999999864
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=2.8e-10 Score=111.02 Aligned_cols=129 Identities=17% Similarity=0.264 Sum_probs=82.2
Q ss_pred CCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEec-CC--C-----C------
Q psy12350 839 HPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGS-GQ--S-----G------ 904 (1129)
Q Consensus 839 ~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~-~~--~-----~------ 904 (1129)
.|+.|+|||.+. ..++|+.+|.......||+|+|||||++|+|+|..+++.|.+++...+ .. . .
T Consensus 1 ~Pr~p~IpG~d~--~~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (162)
T d1ps9a2 1 VPRTPPIDGIDH--PKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGL 78 (162)
T ss_dssp EECCCCCBTTTS--TTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGB
T ss_pred CCCCCCCCCCCC--CCeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhccc
Confidence 389999999875 578998888776677899999999999999999999999876544311 00 0 0
Q ss_pred ccchhhhhccccEEEEecCCccccccC-------------CCCCeEEcCC--eeEEeCCcEEec-CCcE--eeccEEEEc
Q psy12350 905 LDITLDIATRASTVFLSHHSERVTSLC-------------LPNNVVLKPD--VAELTPTGVRFQ-DGSY--EQVDIILCC 966 (1129)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~V~~~~~--i~~v~~~~V~~~-dG~~--~~~D~VI~a 966 (1129)
............+..........+... ...+|++.++ +.+++++++.+. +|++ ++||.||+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A 158 (162)
T d1ps9a2 79 SPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVIC 158 (162)
T ss_dssp CTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEEC
T ss_pred ccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEEC
Confidence 000000111122222211111111000 0125777665 889999987663 5554 699999999
Q ss_pred cCc
Q psy12350 967 TGY 969 (1129)
Q Consensus 967 TG~ 969 (1129)
+|.
T Consensus 159 ~Gq 161 (162)
T d1ps9a2 159 AGQ 161 (162)
T ss_dssp CCE
T ss_pred CCC
Confidence 995
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.96 E-value=4.5e-10 Score=102.62 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=74.7
Q ss_pred CcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccC
Q psy12350 853 IPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLC 931 (1129)
Q Consensus 853 g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1129)
.++++|.+..+.... +|+++|||||.+|+|+|..+++.|++||++++....++. .+.+.....+.+..
T Consensus 7 ~~v~~s~~~l~l~~~-p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~---------- 75 (119)
T d3lada2 7 DVIVDSTGALDFQNV-PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTK---------- 75 (119)
T ss_dssp SSEEEHHHHTSCSSC-CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHH----------
T ss_pred CEEEchhHhhCcccC-CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHh----------
Confidence 368888887766655 699999999999999999999999999999998766543 23333333222211
Q ss_pred CCCCeEEcCC--eeEEeCC--c--EEecCC---cEeeccEEEEccC
Q psy12350 932 LPNNVVLKPD--VAELTPT--G--VRFQDG---SYEQVDIILCCTG 968 (1129)
Q Consensus 932 ~~~~V~~~~~--i~~v~~~--~--V~~~dG---~~~~~D~VI~aTG 968 (1129)
.+|+++.+ +++++.+ + +++.++ +++++|.||+|||
T Consensus 76 --~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 76 --QGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp --TTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred --cCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 25666655 7878643 3 566554 4689999999998
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.96 E-value=1e-10 Score=121.84 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=40.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
.||||||||||||+||.+|++.+.+++|+|||+.+.+||++.|
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~ 44 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF 44 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehh
Confidence 5999999999999999999987778999999999999999885
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.95 E-value=9.9e-13 Score=137.50 Aligned_cols=156 Identities=13% Similarity=0.050 Sum_probs=92.2
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCcccccccccccc----
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLME---- 813 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~---- 813 (1129)
....++|||+|++||++|..|++.| ++|+|||+++.+||+|....... +.+ .+..........+..
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~G--~~v~l~E~~~~~GG~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~ 117 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMESG--YTVHLTDTAEKIGGHLNQVAALP----GLG----EWSYHRDYRETQITKLLKK 117 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTTTTHHHHTTST----TCG----GGGHHHHHHHHHHHHHHTT
T ss_pred CCceEEEEcccHHHHHHHHHHHHhc--cceeeEeeccccCCccccccccc----eee----cccccchhHHHHHHHHhhc
Confidence 3456899999999999999999999 99999999999999998542211 000 000000000000000
Q ss_pred ccCCCCCCCC-------CCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHH
Q psy12350 814 LCGYGHKGNA-------DKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITL 886 (1129)
Q Consensus 814 ~~~~~~~~~~-------~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~ 886 (1129)
.......... ...+.....++.+|+.+..|.+++.+.......+...........+|+|+|||+|.+|+|+|.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~ 197 (233)
T d1djqa3 118 NKESQLALGQKPMTADDVLQYGADKVIIATGASECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAR 197 (233)
T ss_dssp CTTCEEECSCCCCCHHHHHTSCCSEEEECCCEECCHHHHHHHHTTHHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHH
T ss_pred ceeeeeecccccccchhhhhhccceeeeccCCCcccccccccccccccchhhhhhhhhccccCCceeEecCchHHHHHHH
Confidence 0000000000 001111223334888877776554332111111221111222345799999999999999999
Q ss_pred HHHhcCCEEEEEecCCC
Q psy12350 887 DIATTGKQAVVVGSGQS 903 (1129)
Q Consensus 887 ~la~~~~~V~vv~~~~~ 903 (1129)
+|++.+++|+++.+...
T Consensus 198 ~l~~~g~~Vtli~r~~~ 214 (233)
T d1djqa3 198 EIEEANPQIAIPYKRET 214 (233)
T ss_dssp TTTSSCTTSCCCCCCCC
T ss_pred HHHhcCCceEEEEeccc
Confidence 99999999999988654
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.94 E-value=3.1e-10 Score=103.14 Aligned_cols=103 Identities=19% Similarity=0.274 Sum_probs=74.1
Q ss_pred CcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccC
Q psy12350 853 IPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLC 931 (1129)
Q Consensus 853 g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1129)
++++.|.+....... +|+++|||||..|+|+|..|++.|++||++++.+..++. .+.+.+...+.+..
T Consensus 6 ~~~~~s~~~l~~~~~-p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~---------- 74 (115)
T d1lvla2 6 GPVISSTEALAPKAL-PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKK---------- 74 (115)
T ss_dssp TTEECHHHHTCCSSC-CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHH----------
T ss_pred CcEECChHHhCcccC-CCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHh----------
Confidence 478888777665555 699999999999999999999999999999998776543 22233222221111
Q ss_pred CCCCeEEcCC--eeEEeCCcEEec--C--CcEeeccEEEEccC
Q psy12350 932 LPNNVVLKPD--VAELTPTGVRFQ--D--GSYEQVDIILCCTG 968 (1129)
Q Consensus 932 ~~~~V~~~~~--i~~v~~~~V~~~--d--G~~~~~D~VI~aTG 968 (1129)
.+|+++.+ |++++++.+... + ++++++|.||+|||
T Consensus 75 --~gV~i~~~~~V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 75 --LGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp --HTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred --hcceEEcCcEEEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence 15666655 888877664432 2 34689999999998
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=98.94 E-value=2.2e-10 Score=120.91 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=85.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCC----------CCccCcccccccc-cC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYG----------LPVHSSMYKSLKT-NL 77 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~----------~~~~~~~y~~l~~-~~ 77 (1129)
.+||+|||||||||+||..|++ .|++|+|+||++.+||.+.......+.... .+.....+..... ..
T Consensus 2 ~yDViIIGaG~aGl~aA~~la~--~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (251)
T d2i0za1 2 HYDVIVIGGGPSGLMAAIGAAE--EGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFN 79 (251)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSC
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhh
Confidence 4899999999999999999999 669999999999988754322111110000 0000000000000 00
Q ss_pred Ccccc---ccCCCCCCCC----CCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCc
Q psy12350 78 PKEIM---ELSGYHHKGH----PDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDT 150 (1129)
Q Consensus 78 ~~~~~---~~~d~~~~~~----~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 150 (1129)
..... ...+.++... ..+......++.+.|.+.+++.++ .|+++++|+.|... ...+......+
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv--~i~~~~~v~~i~~~-----~~~~~~v~~~~-- 150 (251)
T d2i0za1 80 NEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGV--KIRTNTPVETIEYE-----NGQTKAVILQT-- 150 (251)
T ss_dssp HHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTC--EEECSCCEEEEEEE-----TTEEEEEEETT--
T ss_pred hHHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCC--cccCCcEEEEEEEE-----CCEEEEEEeCC--
Confidence 00000 0001111000 011123567888889888988877 89999999998763 12222111122
Q ss_pred cceEEecceeeeEEEEecccCCCCCc
Q psy12350 151 VGFYLFDLQVRFFLQLMQGHVTLPSK 176 (1129)
Q Consensus 151 ~~~~~~d~~~~~~lvvAtG~~~~p~~ 176 (1129)
.+....| +||+|||..+.|.+
T Consensus 151 g~~i~a~-----~vI~AtGg~S~p~~ 171 (251)
T d2i0za1 151 GEVLETN-----HVVIAVGGKSVPQT 171 (251)
T ss_dssp CCEEECS-----CEEECCCCSSSGGG
T ss_pred CCeEecC-----eEEEccCCcccccc
Confidence 2345677 99999998776643
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.93 E-value=2.1e-10 Score=116.02 Aligned_cols=42 Identities=26% Similarity=0.525 Sum_probs=38.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~~~GG~w~~ 52 (1129)
.+||+||||||+||+||.+|++ .|+ +|+||||.+.+||.|.+
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~--~G~~~V~v~E~~~~~gg~~~~ 46 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLAR--LGYSDITIFEKQEYVGGLSTS 46 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHH--TTCCCEEEEESSSSCSTHHHH
T ss_pred CCEEEEECChHHHHHHHHHHHH--CCCCeEEEEEecCcccchhhh
Confidence 5799999999999999999999 567 59999999999998874
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.90 E-value=6.1e-11 Score=109.21 Aligned_cols=70 Identities=16% Similarity=0.276 Sum_probs=59.5
Q ss_pred CCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCceEEcCCceEEcCCCEeecCEE
Q psy12350 265 AANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAELTPTGVRFQDGSYEQVDII 330 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~~~~~v~~~dg~~~~~D~V 330 (1129)
||||++|+|+|..|++.|.+||+++|.+.+++. +++ ++..++.|++++++++ +.+++++++|.|
T Consensus 38 iGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~~-d~~~~~~~~~~l~~~GV~~~~~~~v~~~~~~~v-~~~~~~i~~D~v 115 (122)
T d1xhca2 38 IGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGL-DEELSNMIKDMLEETGVKFFLNSELLEANEEGV-LTNSGFIEGKVK 115 (122)
T ss_dssp EECSHHHHHHHHHHHHTTCEEEEECSSSCCTTC-CHHHHHHHHHHHHHTTEEEECSCCEEEECSSEE-EETTEEEECSCE
T ss_pred ECCcHHHHHHHHHhhcccceEEEEeccccccCC-CHHHHHHHHHHHHHCCcEEEeCCEEEEEeCCEE-EeCCCEEECCEE
Confidence 899999999999999999999999999987652 211 4566788999988876 567888999999
Q ss_pred EEcccc
Q psy12350 331 LYCTGY 336 (1129)
Q Consensus 331 I~atG~ 336 (1129)
|+|||.
T Consensus 116 i~a~Gv 121 (122)
T d1xhca2 116 ICAIGI 121 (122)
T ss_dssp EEECCE
T ss_pred EEEEEe
Confidence 999995
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.90 E-value=7.2e-10 Score=103.35 Aligned_cols=89 Identities=17% Similarity=0.304 Sum_probs=66.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc--hhhhhccccEEEEecCCccccccCCCCCeEEcCC--ee
Q psy12350 868 AGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI--TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VA 943 (1129)
Q Consensus 868 ~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~ 943 (1129)
.+|+|+|||||.+|+|+|..|++.|.+||++++.+..++. .+.......+.+.. .+|+++.+ ++
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~------------~GV~i~~~~~v~ 101 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHRE------------AGVDIRTGTQVC 101 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHH------------HTCEEECSCCEE
T ss_pred cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccc------------cccEEEeCCeEE
Confidence 4799999999999999999999999999999998876542 22222222221111 15666654 77
Q ss_pred EEeCC-------cEEecCCcEeeccEEEEccC
Q psy12350 944 ELTPT-------GVRFQDGSYEQVDIILCCTG 968 (1129)
Q Consensus 944 ~v~~~-------~V~~~dG~~~~~D~VI~aTG 968 (1129)
+++.. .+.++||+++++|.||+|+|
T Consensus 102 ~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 102 GFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp EEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred EEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 77532 27899999999999999998
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=2.6e-10 Score=103.74 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=61.3
Q ss_pred CCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCceEEcCC-----ceEEcCCCEe
Q psy12350 265 AANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAELTPT-----GVRFQDGSYE 325 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~~~~-----~v~~~dg~~~ 325 (1129)
||||++|+|+|..|++.|.+||+++|.+++++..+++ ++..++.|+++..+ .+.++||+++
T Consensus 27 iGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~ 106 (116)
T d1gesa2 27 VGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSE 106 (116)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEE
T ss_pred ECCChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEE
Confidence 8999999999999999999999999999887755433 56678888888643 2778999999
Q ss_pred ecCEEEEccc
Q psy12350 326 QVDIILYCTG 335 (1129)
Q Consensus 326 ~~D~VI~atG 335 (1129)
++|.||+|||
T Consensus 107 ~~D~vi~a~G 116 (116)
T d1gesa2 107 TVDCLIWAIG 116 (116)
T ss_dssp EESEEEECSC
T ss_pred EcCEEEEecC
Confidence 9999999998
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.87 E-value=8.7e-10 Score=101.29 Aligned_cols=89 Identities=19% Similarity=0.288 Sum_probs=66.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--e
Q psy12350 867 FAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--V 942 (1129)
Q Consensus 867 ~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i 942 (1129)
-.+|+|+|||||.+|+|+|..|++.|.+||++++.++.++ +.+.+.....+.+. ..+|+++.+ +
T Consensus 28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~------------~~gv~~~~~~~v 95 (123)
T d1nhpa2 28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEME------------ANNITIATGETV 95 (123)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHH------------TTTEEEEESCCE
T ss_pred cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhh------------cCCeEEEeCceE
Confidence 3579999999999999999999999999999999876653 23333333322111 125666654 8
Q ss_pred eEEeCCc---EEecCCcEeeccEEEEcc
Q psy12350 943 AELTPTG---VRFQDGSYEQVDIILCCT 967 (1129)
Q Consensus 943 ~~v~~~~---V~~~dG~~~~~D~VI~aT 967 (1129)
+++++++ ..+.||+++++|.||+|.
T Consensus 96 ~~i~~~~~~~~v~~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 96 ERYEGDGRVQKVVTDKNAYDADLVVVAV 123 (123)
T ss_dssp EEEECSSBCCEEEESSCEEECSEEEECS
T ss_pred EEEEcCCCEEEEEeCCCEEECCEEEEEC
Confidence 8997654 557899999999999983
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=7.5e-10 Score=102.13 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=74.1
Q ss_pred CCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEec
Q psy12350 844 EFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSH 922 (1129)
Q Consensus 844 ~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~ 922 (1129)
++||.+. .++|.+..+...+ .|+|+|||||.+|+|+|..+++.|.+||++++++..++. ++.+.....+.+..
T Consensus 2 ~IPG~e~----~~ts~~~~~l~~~-pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~- 75 (125)
T d3grsa2 2 QIPGASL----GITSDGFFQLEEL-PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELEN- 75 (125)
T ss_dssp TSTTGGG----SBCHHHHTTCCSC-CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHH-
T ss_pred CCCCccc----cCCHHHHhChhhc-CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHH-
Confidence 4778652 4566666555544 599999999999999999999999999999998877653 33333333322211
Q ss_pred CCccccccCCCCCeEEcCC--eeEEeC--CcEE-----ecCCc------EeeccEEEEccC
Q psy12350 923 HSERVTSLCLPNNVVLKPD--VAELTP--TGVR-----FQDGS------YEQVDIILCCTG 968 (1129)
Q Consensus 923 ~~~~~~~~~~~~~V~~~~~--i~~v~~--~~V~-----~~dG~------~~~~D~VI~aTG 968 (1129)
.+|+++.+ +++++. +++. ..+|. .+++|.||+|||
T Consensus 76 -----------~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 76 -----------AGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp -----------TTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred -----------CCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 26777765 777743 4422 23443 358999999998
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.85 E-value=8.4e-10 Score=100.52 Aligned_cols=106 Identities=13% Similarity=0.169 Sum_probs=72.4
Q ss_pred CCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcC---CEEEEEecCCCCccch-hhhhccccEEEE
Q psy12350 845 FKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTG---KQAVVVGSGQSGLDIT-LDIATRASTVFL 920 (1129)
Q Consensus 845 i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~---~~V~vv~~~~~~~~~~-~~~~~~~~~~~~ 920 (1129)
+||.+ .++.+.+..+..+. +|+++|||||.+|+|+|..+++.+ .+||++++++..++.. +.+.....+.+.
T Consensus 1 iPG~~----~~~t~~~~~~l~~~-p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~ 75 (117)
T d1aoga2 1 IPGIE----HCISSNEAFYLPEP-PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLT 75 (117)
T ss_dssp CTTGG----GCBCHHHHTTCSSC-CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHH
T ss_pred CcCcc----ceEcHHHHhCchhc-CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHH
Confidence 46764 24455555444443 799999999999999998877654 5799999988776542 333333332222
Q ss_pred ecCCccccccCCCCCeEEcCC--eeEEeC--Cc---EEecCCcEeeccEEEEcc
Q psy12350 921 SHHSERVTSLCLPNNVVLKPD--VAELTP--TG---VRFQDGSYEQVDIILCCT 967 (1129)
Q Consensus 921 ~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~~---V~~~dG~~~~~D~VI~aT 967 (1129)
.. +|+++.+ +++++. ++ |.++||+++++|.||+|.
T Consensus 76 ~~------------GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 76 AN------------GIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp HT------------TCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred hc------------CcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence 21 5666654 888853 22 889999999999999984
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=1.8e-09 Score=99.13 Aligned_cols=112 Identities=16% Similarity=0.211 Sum_probs=83.1
Q ss_pred CCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEE
Q psy12350 841 IYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFL 920 (1129)
Q Consensus 841 ~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~ 920 (1129)
+.+++||.++|.|+-+|.+..++...|+||+|+|||+|+||+|-|..|++.+++|+++.|++.... .+.+.+.
T Consensus 2 R~L~ipge~~~~gkGV~yca~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~-~~~~~~~------ 74 (126)
T d1fl2a2 2 RNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA-DQVLQDK------ 74 (126)
T ss_dssp CCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS-CHHHHHH------
T ss_pred CcCCCCCHHHhcCCCEEEEEecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc-ccccccc------
Confidence 457899999999998998888888889999999999999999999999999999999988643211 1100000
Q ss_pred ecCCccccccCCCCCeEEcCC--eeEEeCC--c---EEec---CCc--EeeccEEEEccC
Q psy12350 921 SHHSERVTSLCLPNNVVLKPD--VAELTPT--G---VRFQ---DGS--YEQVDIILCCTG 968 (1129)
Q Consensus 921 ~~~~~~~~~~~~~~~V~~~~~--i~~v~~~--~---V~~~---dG~--~~~~D~VI~aTG 968 (1129)
+. ..++|++..+ +.++.++ . |++. +|+ ++++|.|+.+.|
T Consensus 75 -------~~--~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG 125 (126)
T d1fl2a2 75 -------LR--SLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG 125 (126)
T ss_dssp -------HH--TCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred -------cc--cccceeEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence 00 0236777765 7777653 2 5554 354 479999999988
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.83 E-value=1e-09 Score=100.05 Aligned_cols=107 Identities=21% Similarity=0.262 Sum_probs=74.5
Q ss_pred CCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccch-hhhhccccEEEEe
Q psy12350 843 PEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDIT-LDIATRASTVFLS 921 (1129)
Q Consensus 843 P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~-~~~~~~~~~~~~~ 921 (1129)
|.+|+. ++++.|.+..+.... +|+|+|||||++|+|+|..+++.|.+||++++++..++.. +.+.....+.+..
T Consensus 1 P~~~~~----~~i~~s~~~l~~~~~-p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~ 75 (117)
T d1ebda2 1 PNFKFS----NRILDSTGALNLGEV-PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKK 75 (117)
T ss_dssp TTBCCC----SSEECHHHHHTCSSC-CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHH
T ss_pred CcCCCC----CCEEChhHhhChhhc-CCeEEEECCCccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHh
Confidence 556664 368888877776655 6999999999999999999999999999999988766432 2233322222111
Q ss_pred cCCccccccCCCCCeEEcCC--eeEEeC--Cc--EEe-cCC--cEeeccEEEEc
Q psy12350 922 HHSERVTSLCLPNNVVLKPD--VAELTP--TG--VRF-QDG--SYEQVDIILCC 966 (1129)
Q Consensus 922 ~~~~~~~~~~~~~~V~~~~~--i~~v~~--~~--V~~-~dG--~~~~~D~VI~a 966 (1129)
.+|+++.+ ++++++ ++ +.+ .+| +++++|.||++
T Consensus 76 ------------~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 76 ------------KGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp ------------TTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred ------------cCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence 25666655 888854 33 444 345 45899999974
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.83 E-value=3.9e-09 Score=106.57 Aligned_cols=158 Identities=12% Similarity=0.155 Sum_probs=96.8
Q ss_pred eEEEEcCCccHHHHHHHHHhc--CCEEEEEecCCCCccchhhhhccccEEE-----EecCCccccccCCCCCeEEcCC--
Q psy12350 871 QAVVVGSGQSGLDITLDIATT--GKQAVVVGSGQSGLDITLDIATRASTVF-----LSHHSERVTSLCLPNNVVLKPD-- 941 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~--~~~V~vv~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~V~~~~~-- 941 (1129)
||+|||||++|+|+|.+|.+. ..+|+++++..........+........ +.....+.+. ..+|+++.+
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~---~~gi~v~~~~~ 78 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKME---SRGVNVFSNTE 78 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHH---HTTCEEEETEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHH---HCCcEEEEeec
Confidence 799999999999999999987 4579999876543211111111100000 0000001111 126666554
Q ss_pred eeEEeCC--cEEe---cCCcE--eeccEEEEccCccCcC--------CCCCCCCCeeecCCcccccccceeecCCCCcEE
Q psy12350 942 VAELTPT--GVRF---QDGSY--EQVDIILCCTGYSNHY--------PFLHESCGIKVVNKNVQPLYKHTINIEHPTMFI 1006 (1129)
Q Consensus 942 i~~v~~~--~V~~---~dG~~--~~~D~VI~aTG~~~~~--------~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~ 1006 (1129)
|.+++.+ +|.+ .+|++ +++|.+|+|||..+.. .|+.. ++.+++++...+. ..+.++.|+||+
T Consensus 79 V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~--~~~~~~~G~i~vd-~~~~T~~~~IyA 155 (198)
T d1nhpa1 79 ITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKG--TLELHPNGLIKTD-EYMRTSEPDVFA 155 (198)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTT--TSCBCTTSCBCCC-TTCBCSSTTEEE
T ss_pred eeeEeeccccceeeecccccccccccceeeEeecceeecccccccccccccc--cceeccCCceecC-CcccccccceEE
Confidence 8888754 4553 45554 6899999999987642 23322 3455555443333 334568999999
Q ss_pred Ecccccc-----------chhHHHHHHHHHHHHHHcCCC
Q psy12350 1007 LGVPRHT-----------LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 1007 iG~~~~~-----------~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
+|++... .....+..||+.+++.|.+..
T Consensus 156 ~GD~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~ 194 (198)
T d1nhpa1 156 VGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPV 194 (198)
T ss_dssp CGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred ecceeecccccCCCcccccHHHHHHHHHHHHHHhhCCCC
Confidence 9998632 135678899999999987654
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.82 E-value=6.4e-10 Score=100.98 Aligned_cols=70 Identities=16% Similarity=0.347 Sum_probs=58.1
Q ss_pred CCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCceEEcC--Cc---eEEcCCCEe
Q psy12350 265 AANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAELTP--TG---VRFQDGSYE 325 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~~~--~~---v~~~dg~~~ 325 (1129)
||||++|+|+|..|++.|.+||+++|++++++..++. ++..++.|++++. ++ +.++||+++
T Consensus 28 iGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~ 107 (117)
T d1onfa2 28 VGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIY 107 (117)
T ss_dssp ECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEE
T ss_pred ECCchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEE
Confidence 8999999999999999999999999999887654322 5667888999852 32 788999987
Q ss_pred -ecCEEEEcc
Q psy12350 326 -QVDIILYCT 334 (1129)
Q Consensus 326 -~~D~VI~at 334 (1129)
++|.||+|.
T Consensus 108 ~~~D~Vi~AI 117 (117)
T d1onfa2 108 EHFDHVIYCV 117 (117)
T ss_dssp EEESEEEECC
T ss_pred EeCCEEEEeC
Confidence 579999984
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=1.6e-09 Score=101.72 Aligned_cols=90 Identities=14% Similarity=0.289 Sum_probs=66.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh----cCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC
Q psy12350 868 AGKQAVVVGSGQSGLDITLDIAT----TGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD 941 (1129)
Q Consensus 868 ~gk~VvVVG~G~Sg~eiA~~la~----~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 941 (1129)
.+|+++|||||.+|+|+|.+|++ .+.+|+++++.+..+. +.+.+...+.+.+. ..+|+++.+
T Consensus 36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~------------~~GV~~~~~ 103 (137)
T d1m6ia2 36 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVR------------REGVKVMPN 103 (137)
T ss_dssp HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHH------------TTTCEEECS
T ss_pred cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHH------------hCCcEEEeC
Confidence 37899999999999999999974 5889999999877653 22222222222111 126777655
Q ss_pred --eeEEeCC----cEEecCCcEeeccEEEEccCc
Q psy12350 942 --VAELTPT----GVRFQDGSYEQVDIILCCTGY 969 (1129)
Q Consensus 942 --i~~v~~~----~V~~~dG~~~~~D~VI~aTG~ 969 (1129)
|++++.+ .|+++||+++++|.||+|||.
T Consensus 104 ~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 104 AIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL 137 (137)
T ss_dssp CCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred CEEEEEEecCCEEEEEECCCCEEECCEEEEeecC
Confidence 8888654 388999999999999999994
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.81 E-value=1.1e-08 Score=93.21 Aligned_cols=99 Identities=20% Similarity=0.204 Sum_probs=75.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.+++|+|||||+.|+.+|..|++ .|.+|+++|+++.+- |
T Consensus 21 ~p~~i~IiG~G~ig~E~A~~l~~--~G~~Vtiv~~~~~ll------------------------------~--------- 59 (119)
T d3lada2 21 VPGKLGVIGAGVIGLELGSVWAR--LGAEVTVLEAMDKFL------------------------------P--------- 59 (119)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSS------------------------------T---------
T ss_pred CCCeEEEECCChHHHHHHHHHHH--cCCceEEEEeecccC------------------------------C---------
Confidence 35899999999999999999999 779999999977420 0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
. -..++.++++++.++.|+ .++++++|++++.. +..+++.....+......+| +|++|
T Consensus 60 --------~--~d~ei~~~l~~~l~~~Gv--~i~~~~~v~~i~~~-----~~~v~v~~~~~~~~~~~~~D-----~vlvA 117 (119)
T d3lada2 60 --------A--VDEQVAKEAQKILTKQGL--KILLGARVTGTEVK-----NKQVTVKFVDAEGEKSQAFD-----KLIVA 117 (119)
T ss_dssp --------T--SCHHHHHHHHHHHHHTTE--EEEETCEEEEEEEC-----SSCEEEEEESSSEEEEEEES-----EEEEC
T ss_pred --------c--ccchhHHHHHHHHHhcCc--eeecCcEEEEEEEe-----CCEEEEEEEECCCCEEEECC-----EEEEe
Confidence 0 123688888888888877 89999999999863 23344443334444567899 99999
Q ss_pred cc
Q psy12350 168 QG 169 (1129)
Q Consensus 168 tG 169 (1129)
+|
T Consensus 118 vG 119 (119)
T d3lada2 118 VG 119 (119)
T ss_dssp SC
T ss_pred eC
Confidence 98
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=5.8e-10 Score=102.68 Aligned_cols=112 Identities=13% Similarity=0.171 Sum_probs=79.3
Q ss_pred CCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecC
Q psy12350 844 EFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHH 923 (1129)
Q Consensus 844 ~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1129)
.+||.++|.|+-+|.+..++...|+||+|+|||+|+||+|.|..|++.+++|+++.|+..... .+.....+.+
T Consensus 2 ~ipge~~~~gkgV~yca~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~-~~~~~~~~~~------ 74 (126)
T d1trba2 2 GLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA-EKILIKRLMD------ 74 (126)
T ss_dssp CCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC-CHHHHHHHHH------
T ss_pred cCCCHHHhcCCCEEEEEecchHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccc-hhHHHHHHHH------
Confidence 578888899998998877888889999999999999999999999999999999988653211 1101111100
Q ss_pred CccccccCCCCCeEEcCC--eeEEeCCc-----EEecCC------cEeeccEEEEccC
Q psy12350 924 SERVTSLCLPNNVVLKPD--VAELTPTG-----VRFQDG------SYEQVDIILCCTG 968 (1129)
Q Consensus 924 ~~~~~~~~~~~~V~~~~~--i~~v~~~~-----V~~~dG------~~~~~D~VI~aTG 968 (1129)
.....+|.+..+ +.++.++. |++.|. +++++|.|+++.|
T Consensus 75 ------~~~~~~i~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 75 ------KVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp ------HHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred ------hhcccceeEecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 000125666544 77776532 556542 3479999999987
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.78 E-value=6e-10 Score=111.20 Aligned_cols=111 Identities=11% Similarity=0.169 Sum_probs=75.7
Q ss_pred CCCCCCcccchhhhcccccEEEEccccCCcccccC-----------------------C--CCeEEcCCceEEcCC--ce
Q psy12350 265 AANGPSGLDITHDISTEATTVFLSHHSEHVKKLRF-----------------------P--NNVVKKPDIAELTPT--GV 317 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~-----------------------~--~~i~~~~~v~~~~~~--~v 317 (1129)
||||++|+|+|..|++.+.+|+++.+++....... . -++..+..+++++.+ .+
T Consensus 9 IGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~~~~~~ 88 (183)
T d1d7ya1 9 LGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTV 88 (183)
T ss_dssp ECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEETTTTEE
T ss_pred ECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccccccee
Confidence 89999999999999999988777766543321100 0 134456678888654 48
Q ss_pred EEcCCCEeecCEEEEcccccccCCCCCCC----CCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 318 RFQDGSYEQVDIILYCTGYTYRYPFLHES----CGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 318 ~~~dg~~~~~D~VI~atG~~~~~~~l~~~----~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
.++||+++++|.||+|||..++..+++.+ .++..++...++-|.+ .++|++|.+|...
T Consensus 89 ~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~~~I~vd~~~~---ts~~~IyA~GD~a 150 (183)
T d1d7ya1 89 ALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACDDGIFVDAYGR---TTCPDVYALGDVT 150 (183)
T ss_dssp EETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBSSSEECCTTCB---CSSTTEEECGGGE
T ss_pred EecCCcEeeeeeEEEEEEEEcccccccccccceeeEeeCCcEEecccee---ccccccchhhhhh
Confidence 89999999999999999999987665422 2223222222233322 4688999999774
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.77 E-value=1e-09 Score=100.97 Aligned_cols=92 Identities=14% Similarity=0.160 Sum_probs=63.4
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccch-hhhhccccEEEEecCCccccccCCCCCeEEcCC--
Q psy12350 865 EPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDIT-LDIATRASTVFLSHHSERVTSLCLPNNVVLKPD-- 941 (1129)
Q Consensus 865 ~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-- 941 (1129)
....+|+|+|||||.+|+|+|..|++.+.+|+++++.+..++.. +.......+.+.. .+|+++.+
T Consensus 18 ~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~------------~gI~v~~~~~ 85 (121)
T d1mo9a2 18 DYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKE------------QGMEIISGSN 85 (121)
T ss_dssp CSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHH------------TTCEEESSCE
T ss_pred hhCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhc------------cccEEEcCCE
Confidence 34568999999999999999999999999999999977655332 2222222221111 15666654
Q ss_pred eeEEeCCc------E---EecCCcEeeccEEEEccC
Q psy12350 942 VAELTPTG------V---RFQDGSYEQVDIILCCTG 968 (1129)
Q Consensus 942 i~~v~~~~------V---~~~dG~~~~~D~VI~aTG 968 (1129)
+.+++.++ + ...+++++++|.||+|||
T Consensus 86 v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 86 VTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp EEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred EEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 77775432 2 123556789999999998
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.77 E-value=1.4e-09 Score=101.25 Aligned_cols=71 Identities=15% Similarity=0.226 Sum_probs=60.9
Q ss_pred CCCCCCcccchhhhcccccEEEEccccCCcccccCCC---------------CeEEcCCceEEcCC-------ceEEcCC
Q psy12350 265 AANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------------NVVKKPDIAELTPT-------GVRFQDG 322 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------------~i~~~~~v~~~~~~-------~v~~~dg 322 (1129)
||||++|+|+|..|++.|.+||++++.+++++..+++ ++..+..|++++.. .|.++||
T Consensus 41 IGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G 120 (133)
T d1q1ra2 41 IGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDG 120 (133)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTS
T ss_pred ECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCC
Confidence 8999999999999999999999999999887655442 46667888888532 2789999
Q ss_pred CEeecCEEEEccc
Q psy12350 323 SYEQVDIILYCTG 335 (1129)
Q Consensus 323 ~~~~~D~VI~atG 335 (1129)
+++++|.||+|+|
T Consensus 121 ~~i~~D~vi~a~G 133 (133)
T d1q1ra2 121 TRLPADLVIAGIG 133 (133)
T ss_dssp CEEECSEEEECCC
T ss_pred CEEECCEEEEeeC
Confidence 9999999999998
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=98.77 E-value=1.2e-09 Score=99.63 Aligned_cols=71 Identities=17% Similarity=0.243 Sum_probs=59.4
Q ss_pred CCCCCCcccchhhhcc---cccEEEEccccCCcccccCCC--------------CeEEcCCceEEcCC-----ceEEcCC
Q psy12350 265 AANGPSGLDITHDIST---EATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAELTPT-----GVRFQDG 322 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~---~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~~~~-----~v~~~dg 322 (1129)
||||++|+|+|..+++ .|.+|++++|++.+++..+++ ++..++.|++++.+ .+.++||
T Consensus 24 iGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g 103 (117)
T d1feca2 24 VGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESG 103 (117)
T ss_dssp ECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTS
T ss_pred ECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCC
Confidence 8999999999987554 488999999999888754432 57778999999632 2789999
Q ss_pred CEeecCEEEEccc
Q psy12350 323 SYEQVDIILYCTG 335 (1129)
Q Consensus 323 ~~~~~D~VI~atG 335 (1129)
+++++|.||+|||
T Consensus 104 ~~i~~D~Vi~a~G 116 (117)
T d1feca2 104 AEADYDVVMLAIG 116 (117)
T ss_dssp CEEEESEEEECSC
T ss_pred CEEEcCEEEEecC
Confidence 9999999999999
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=7.2e-10 Score=101.93 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=59.6
Q ss_pred CCCCCCCCCCcCCcEEecCCCCCCCCCCCCeEEEEccCcchhhhHHHhhcccCeEEEEEEecce
Q psy12350 503 VYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLRFDNK 566 (1129)
Q Consensus 503 ~~p~~~g~~~f~g~v~hs~~~~~~~~~~~k~v~ViG~g~sa~~~~~~l~~~~~~v~~~~r~~~~ 566 (1129)
+.+++||+++|.|+-+|.|..||+..++||+|+|||+|+||+|.|..|++.+++|++++|++.+
T Consensus 2 R~L~ipge~~~~gkGV~yca~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~ 65 (126)
T d1fl2a2 2 RNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM 65 (126)
T ss_dssp CCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred CcCCCCCHHHhcCCCEEEEEecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccc
Confidence 4568999999999999999999999999999999999999999999999999999999997644
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.76 E-value=3.7e-09 Score=96.76 Aligned_cols=100 Identities=15% Similarity=0.184 Sum_probs=70.3
Q ss_pred cEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCC
Q psy12350 854 PILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCL 932 (1129)
Q Consensus 854 ~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1129)
++++|.+..+...+ .|+++|||+|++|+|+|..|++.|.+||++++.++.++. .+.+...+.+.+..
T Consensus 9 ~v~ts~~~~~l~~~-p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~----------- 76 (122)
T d1v59a2 9 KIVSSTGALSLKEI-PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKK----------- 76 (122)
T ss_dssp SEECHHHHTTCSSC-CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHH-----------
T ss_pred EEEehHHhhCcccC-CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHh-----------
Confidence 58888777666554 689999999999999999999999999999998877653 23333333222111
Q ss_pred CCCeEEcCC--eeEEeC--Cc----EEecCC-----cEeeccEEEEc
Q psy12350 933 PNNVVLKPD--VAELTP--TG----VRFQDG-----SYEQVDIILCC 966 (1129)
Q Consensus 933 ~~~V~~~~~--i~~v~~--~~----V~~~dG-----~~~~~D~VI~a 966 (1129)
.+|+++.+ +++++. ++ +.+.++ +++++|.||+|
T Consensus 77 -~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 77 -QGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp -TTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred -ccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 15777665 777753 22 344443 35899999986
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.75 E-value=3.5e-09 Score=97.17 Aligned_cols=101 Identities=19% Similarity=0.275 Sum_probs=70.3
Q ss_pred cEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCC
Q psy12350 854 PILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCL 932 (1129)
Q Consensus 854 ~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1129)
.++.|.+..+..+. +|+++|||||.+|+|+|..+++.|.+||++++++..++. .+.+.....+.+..
T Consensus 11 ~v~ts~~~l~l~~~-p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~----------- 78 (123)
T d1dxla2 11 KIVSSTGALALSEI-PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEK----------- 78 (123)
T ss_dssp SEECHHHHTTCSSC-CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHH-----------
T ss_pred eEEeHHHhhCcccc-CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhc-----------
Confidence 57777777766555 799999999999999999999999999999998876653 23333322222211
Q ss_pred CCCeEEcCC--eeEEeCC--c--EEe--c-CCc--EeeccEEEEcc
Q psy12350 933 PNNVVLKPD--VAELTPT--G--VRF--Q-DGS--YEQVDIILCCT 967 (1129)
Q Consensus 933 ~~~V~~~~~--i~~v~~~--~--V~~--~-dG~--~~~~D~VI~aT 967 (1129)
.+|++..+ +.+++.+ + +.+ . +|+ ++++|.|++|.
T Consensus 79 -~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 79 -QGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp -SSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred -ccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence 14666655 8888643 3 333 2 443 47999999874
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=98.74 E-value=9.6e-10 Score=109.68 Aligned_cols=142 Identities=16% Similarity=0.131 Sum_probs=89.5
Q ss_pred eceeeeecCCCCCCCCcccchhhhcccc--cEEEEccccCCcccccC----------------------CCCeEE-cCCc
Q psy12350 255 NEKAFVRDPGAANGPSGLDITHDISTEA--TTVFLSHHSEHVKKLRF----------------------PNNVVK-KPDI 309 (1129)
Q Consensus 255 ~~~~~v~~~~vGgG~sg~e~A~~l~~~~--~~V~lv~r~~~~~~~~~----------------------~~~i~~-~~~v 309 (1129)
||||+| ||||++|+|+|..|.+.+ .+||++++.+....... ...+.. ...+
T Consensus 2 gkrivI----vGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 77 (186)
T d1fcda1 2 GRKVVV----VGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSA 77 (186)
T ss_dssp CCEEEE----ECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCE
T ss_pred CCcEEE----ECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeee
Confidence 566677 999999999999999987 48999998875432211 001111 2223
Q ss_pred eEEcCC--ceEEcCCCEeecCEEEEcccccccCCCCCCCC-------CeEeecCcccccccc-cccCCCCCeEEecccc-
Q psy12350 310 AELTPT--GVRFQDGSYEQVDIILYCTGYTYRYPFLHESC-------GIKVVNKNVQPLYKH-LINIEHPSMCIIGYTY- 378 (1129)
Q Consensus 310 ~~~~~~--~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~-------~~~~~~~~~~~l~~~-~~~~~~p~l~~~G~~~- 378 (1129)
..++.. .+.+.+++++++|.+|+|||.+++.++++... ++..+. .......+ ....+.|+++.+|...
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~iGd~~~ 156 (186)
T d1fcda1 78 TGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDA-GWCPVDIKTFESSIHKGIHVIGDASI 156 (186)
T ss_dssp EECCTTTTEEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTT-SSEEBCSSSCBBSSSTTEEECTTSEE
T ss_pred EeeeeccceeecccceeeccceEEEEeccccchhhhhhhhhhheeccCccccc-ccccceeeeeecccccCceEeccccc
Confidence 333322 37778899999999999999999988876321 011111 11112221 1225677888887543
Q ss_pred ------cccccccccceeeehhhcccccccc
Q psy12350 379 ------RYPFLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 379 ------~~~~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
.+..+. .|++.+|.++.+.+.|+
T Consensus 157 ~~~~p~~~~~A~--~q~~~~A~ni~~~~~G~ 185 (186)
T d1fcda1 157 ANPMPKSGYSAN--SQGKVAAAAVVVLLKGE 185 (186)
T ss_dssp CTTCCSSHHHHH--HHHHHHHHHHHHHHHSS
T ss_pred cCCCCchHhHHH--HHHHHHHHHHHHHhcCC
Confidence 222334 78899999988776654
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.74 E-value=1.5e-08 Score=91.73 Aligned_cols=96 Identities=14% Similarity=0.166 Sum_probs=70.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.+++|+|||||+.|+.+|..|++ .|.+|+|+|+.+.+. +
T Consensus 20 ~p~~vvIiGgG~~G~E~A~~l~~--~g~~Vtlve~~~~il-----------------------~---------------- 58 (115)
T d1lvla2 20 LPQHLVVVGGGYIGLELGIAYRK--LGAQVSVVEARERIL-----------------------P---------------- 58 (115)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSSSS-----------------------T----------------
T ss_pred CCCeEEEECCCHHHHHHHHHHhh--cccceEEEeeecccc-----------------------c----------------
Confidence 35899999999999999999999 669999999977531 0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
.+ ..++.++++++.++.|+ +++++++|++++.. .. +.....+......+| .|++|
T Consensus 59 --------~~--d~~~~~~l~~~l~~~gV--~i~~~~~V~~i~~~-------~~-~~~~~~~~~~~i~~D-----~vi~A 113 (115)
T d1lvla2 59 --------TY--DSELTAPVAESLKKLGI--ALHLGHSVEGYENG-------CL-LANDGKGGQLRLEAD-----RVLVA 113 (115)
T ss_dssp --------TS--CHHHHHHHHHHHHHHTC--EEETTCEEEEEETT-------EE-EEECSSSCCCEECCS-----CEEEC
T ss_pred --------cc--cchhHHHHHHHHHhhcc--eEEcCcEEEEEcCC-------eE-EEEEcCCCeEEEEcC-----EEEEe
Confidence 00 13577888888888887 89999999988642 11 222223334456788 99999
Q ss_pred cc
Q psy12350 168 QG 169 (1129)
Q Consensus 168 tG 169 (1129)
||
T Consensus 114 ~G 115 (115)
T d1lvla2 114 VG 115 (115)
T ss_dssp CC
T ss_pred cC
Confidence 98
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.73 E-value=4.5e-09 Score=106.09 Aligned_cols=112 Identities=13% Similarity=0.229 Sum_probs=73.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
|||+|||||++|+.+|..|++.+++.+|+++||++.+. | ....+...+...+.+
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~----~----------------~~~~~~~~l~~~~~~------ 54 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS----F----------------LSAGMQLYLEGKVKD------ 54 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS----B----------------CGGGHHHHHTTSSCC------
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc----c----------------cccCcchhhcccccc------
Confidence 58999999999999999999988888999999976431 0 000000001111100
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
.+.+..+.....++.++ +++++++|++++. +...+++++...++.....|| +||+|+|
T Consensus 55 ----------~~~~~~~~~~~l~~~gi--~v~~~~~V~~i~~-----~~~~v~~~~~~~g~~~~~~~D-----~li~a~G 112 (198)
T d1nhpa1 55 ----------VNSVRYMTGEKMESRGV--NVFSNTEITAIQP-----KEHQVTVKDLVSGEERVENYD-----KLIISPG 112 (198)
T ss_dssp ----------GGGSBSCCHHHHHHTTC--EEEETEEEEEEET-----TTTEEEEEETTTCCEEEEECS-----EEEECCC
T ss_pred ----------hHHHHHhhHHHHHHCCc--EEEEeeceeeEee-----ccccceeeecccccccccccc-----eeeEeec
Confidence 00111111222344566 8899999999986 445677776666666677899 9999999
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.71 E-value=9.8e-09 Score=105.61 Aligned_cols=163 Identities=13% Similarity=0.144 Sum_probs=100.1
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc------hh------------hh----hcc---ccEEEEecC-C
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI------TL------------DI----ATR---ASTVFLSHH-S 924 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~------~~------------~~----~~~---~~~~~~~~~-~ 924 (1129)
.|+|||+|++|+.+|..+++.|.+|+++++....-.. .+ .. ... ......... .
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAAM 84 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHHH
Confidence 4999999999999999999999999999875432000 00 00 000 000000000 0
Q ss_pred -----------cccccc-CCCCCeEEcCCeeEE-eCCcEEe----cCCcEeeccEEEEccC-----ccCcCCCCC-CCCC
Q psy12350 925 -----------ERVTSL-CLPNNVVLKPDVAEL-TPTGVRF----QDGSYEQVDIILCCTG-----YSNHYPFLH-ESCG 981 (1129)
Q Consensus 925 -----------~~~~~~-~~~~~V~~~~~i~~v-~~~~V~~----~dG~~~~~D~VI~aTG-----~~~~~~fl~-~~~g 981 (1129)
...+.. ....+|++...-..+ .+..... .++..+.+|.||+||| +.|+.+.|. +++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~l~~~g 164 (221)
T d1dxla1 85 MGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIG 164 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSCCTTTT
T ss_pred HHHHHHHHHHHhhHHHHhhhcCCeEEEEeccccccccccccccccccccccccceEEEeECCCccCccccCCCCChHhcC
Confidence 000000 001145544332222 2222221 2344679999999999 456666554 4578
Q ss_pred eeecCCcccccccceeecCCCCcEEEccccccc-hhHHHHHHHHHHHHHHcCCC
Q psy12350 982 IKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 982 ~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
+++++.+...+.. .+.++.|+||++|++...+ ....+..+++.+|+.|.|+.
T Consensus 165 v~~~~~G~i~vd~-~~~T~v~gi~A~GDv~~g~~l~~~A~~~g~~aa~~i~g~~ 217 (221)
T d1dxla1 165 VETDKLGRILVNE-RFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKV 217 (221)
T ss_dssp CCBCSSSCBCCCT-TCBCSSTTEEECSTTSSSCCCHHHHHHHHHHHHHHHTTSC
T ss_pred ceEcCCCcEEeCC-CcccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 9998776554443 3567999999999997654 45889999999999999875
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.70 E-value=1.4e-09 Score=99.81 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=57.6
Q ss_pred CCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCceEEcC--Cc--eEEcC--C--
Q psy12350 265 AANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAELTP--TG--VRFQD--G-- 322 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~~~--~~--v~~~d--g-- 322 (1129)
||||++|+|+|..++++|.+||++++++.+++..+++ ++..++.+++++. ++ |++++ |
T Consensus 32 iGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~ 111 (125)
T d1ojta2 32 IGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPK 111 (125)
T ss_dssp ESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCS
T ss_pred ECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCe
Confidence 8999999999999999999999999999988765433 4566778888863 33 55543 3
Q ss_pred CEeecCEEEEccc
Q psy12350 323 SYEQVDIILYCTG 335 (1129)
Q Consensus 323 ~~~~~D~VI~atG 335 (1129)
+++++|.||+|+|
T Consensus 112 ~~i~~D~vl~A~G 124 (125)
T d1ojta2 112 EPQRYDAVLVAAG 124 (125)
T ss_dssp SCEEESCEEECCC
T ss_pred EEEEcCEEEEecC
Confidence 3689999999999
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.69 E-value=4.3e-08 Score=89.05 Aligned_cols=97 Identities=11% Similarity=0.108 Sum_probs=71.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.+++|+|||||+.|+.+|..|.+ .|.+|+|+|+.+.+...
T Consensus 21 ~p~~v~IiGgG~ig~E~A~~l~~--~G~~Vtlve~~~~il~~-------------------------------------- 60 (117)
T d1ebda2 21 VPKSLVVIGGGYIGIELGTAYAN--FGTKVTILEGAGEILSG-------------------------------------- 60 (117)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSSTT--------------------------------------
T ss_pred cCCeEEEECCCccceeeeeeecc--cccEEEEEEecceeccc--------------------------------------
Confidence 35899999999999999999999 67999999997753100
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
+ ..++.+++.++.++.|+ +++++++|++++... ..+.+....+++.....+| .|+|.
T Consensus 61 ---------~--d~~~~~~l~~~l~~~GI--~i~~~~~v~~i~~~~-----~~~~v~~~~~g~~~~i~~D-----~Vlvs 117 (117)
T d1ebda2 61 ---------F--EKQMAAIIKKRLKKKGV--EVVTNALAKGAEERE-----DGVTVTYEANGETKTIDAD-----YVLVT 117 (117)
T ss_dssp ---------S--CHHHHHHHHHHHHHTTC--EEEESEEEEEEEEET-----TEEEEEEEETTEEEEEEES-----EEEEC
T ss_pred ---------c--cchhHHHHHHHHHhcCC--EEEcCCEEEEEEEcC-----CEEEEEEEeCCCEEEEEeE-----EEEEC
Confidence 0 13678888888888887 999999999997632 2233333334444566788 78763
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.67 E-value=2.6e-09 Score=97.71 Aligned_cols=100 Identities=14% Similarity=0.144 Sum_probs=64.5
Q ss_pred EeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCC
Q psy12350 856 LHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNN 935 (1129)
Q Consensus 856 ~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1129)
++|.++.+.... +|+++|||||++|+|+|..+++.|.+||++.+......+++.+.....+.+.. .+
T Consensus 8 ~tsd~~~~l~~~-P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~------------~G 74 (122)
T d1h6va2 8 ISSDDLFSLPYC-PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEE------------HG 74 (122)
T ss_dssp BCHHHHTTCSSC-CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSTTSCHHHHHHHHHHHHH------------TT
T ss_pred EcchHHhCcccC-CCeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhccCCHHHHHHHHHHHHH------------CC
Confidence 455555554444 68999999999999999999999999999987543323333333333222111 25
Q ss_pred eEEcCC--eeEEeC---C---c--EEecCC---c--EeeccEEEEccC
Q psy12350 936 VVLKPD--VAELTP---T---G--VRFQDG---S--YEQVDIILCCTG 968 (1129)
Q Consensus 936 V~~~~~--i~~v~~---~---~--V~~~dG---~--~~~~D~VI~aTG 968 (1129)
|++..+ +++++. + . +.+.++ + .+++|.|++|+|
T Consensus 75 v~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 75 IKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp EEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred CEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 666655 665532 1 1 344332 2 358999999998
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.66 E-value=4.8e-09 Score=101.26 Aligned_cols=130 Identities=12% Similarity=0.021 Sum_probs=90.3
Q ss_pred ccCCCCCC-CCCCCCCCCCcEEeeccCCCCCCCCCCeEEEE--cCCccHHHHHHHHHhcCCEEEEEecCCCCccchh-hh
Q psy12350 836 NYNHPIYP-EFKGKDMCQIPILHSRDYRTPEPFAGKQAVVV--GSGQSGLDITLDIATTGKQAVVVGSGQSGLDITL-DI 911 (1129)
Q Consensus 836 ~~~~P~~P-~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVV--G~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~-~~ 911 (1129)
+|+.|..| ++||++.-...++.+.+........+++|+|+ |||.+|+|+|..|++.|++||++++.+..++... ..
T Consensus 5 tG~~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~~ 84 (156)
T d1djqa2 5 DGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLE 84 (156)
T ss_dssp SCCCTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHHTTC
T ss_pred CCCCCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccchhH
Confidence 67888887 79999753336888877766666668888887 9999999999999999999999998765443211 11
Q ss_pred hccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCcEEecCCcEeeccEEEEccCccCcCCCCC
Q psy12350 912 ATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLH 977 (1129)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~ 977 (1129)
.....+. + ...+|++.++ +.+++++++.+.++...+.+.++.++|..++....+
T Consensus 85 ~~~~~~~---------l---~~~GV~i~~~~~v~~i~~~~v~l~~~~~~~~~~v~~~~g~~~~~~~~~ 140 (156)
T d1djqa2 85 YPNMMRR---------L---HELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTS 140 (156)
T ss_dssp HHHHHHH---------H---HHTTCEEEETEEEEEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCC
T ss_pred HHHHHHH---------H---hhccceEEeccEEEEecCcceEEEeeeccccceeeeeeEEEecccCCc
Confidence 1111111 1 1125666665 888888888887666666677777777776655433
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.66 E-value=6.6e-09 Score=95.27 Aligned_cols=70 Identities=9% Similarity=0.165 Sum_probs=59.8
Q ss_pred CCCCCCcccchhhhcccccEEEEccccCCcccccCCC---------------CeEEcCCceEEcCCc---eEEcCCCEee
Q psy12350 265 AANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------------NVVKKPDIAELTPTG---VRFQDGSYEQ 326 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------------~i~~~~~v~~~~~~~---v~~~dg~~~~ 326 (1129)
||||++|+|+|..|++.|.+||++++.+++++..++. ++..+..++++++++ ++++||++++
T Consensus 36 iGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~dg~~i~ 115 (123)
T d1nhpa2 36 IGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYD 115 (123)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEESSCEEE
T ss_pred ECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcCCCEEEEEeCCCEEE
Confidence 8999999999999999999999999999877643322 567788899998663 5688999999
Q ss_pred cCEEEEcc
Q psy12350 327 VDIILYCT 334 (1129)
Q Consensus 327 ~D~VI~at 334 (1129)
+|.||+|.
T Consensus 116 ~D~vi~aI 123 (123)
T d1nhpa2 116 ADLVVVAV 123 (123)
T ss_dssp CSEEEECS
T ss_pred CCEEEEEC
Confidence 99999984
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=4.5e-09 Score=98.58 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=60.0
Q ss_pred CCCCCCcccchhhhcc----cccEEEEccccCCcccccCCC---------------CeEEcCCceEEcCC----ceEEcC
Q psy12350 265 AANGPSGLDITHDIST----EATTVFLSHHSEHVKKLRFPN---------------NVVKKPDIAELTPT----GVRFQD 321 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~----~~~~V~lv~r~~~~~~~~~~~---------------~i~~~~~v~~~~~~----~v~~~d 321 (1129)
||||++|+|+|..|++ .+.+|+++++.+.+++..++. ++..++.|++++.+ .|+++|
T Consensus 43 vGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~ 122 (137)
T d1m6ia2 43 IGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKD 122 (137)
T ss_dssp ECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETT
T ss_pred ECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECC
Confidence 8999999999999864 578999999999877644432 56668889999754 388999
Q ss_pred CCEeecCEEEEcccc
Q psy12350 322 GSYEQVDIILYCTGY 336 (1129)
Q Consensus 322 g~~~~~D~VI~atG~ 336 (1129)
|+++++|.||+|||.
T Consensus 123 G~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 123 GRKVETDHIVAAVGL 137 (137)
T ss_dssp SCEEEESEEEECCCE
T ss_pred CCEEECCEEEEeecC
Confidence 999999999999994
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.63 E-value=1.2e-09 Score=100.53 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=57.0
Q ss_pred CCCCCCCcCCcEEecCCCCCCCCCCCCeEEEEccCcchhhhHHHhhcccCeEEEEEEecce
Q psy12350 506 DFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLRFDNK 566 (1129)
Q Consensus 506 ~~~g~~~f~g~v~hs~~~~~~~~~~~k~v~ViG~g~sa~~~~~~l~~~~~~v~~~~r~~~~ 566 (1129)
.+||+++|.|+-+|.|..|++..++||+|+|||+|+||+|.|..|++.+++|++++|++.+
T Consensus 2 ~ipge~~~~gkgV~yca~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ 62 (126)
T d1trba2 2 GLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 62 (126)
T ss_dssp CCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred cCCCHHHhcCCCEEEEEecchHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc
Confidence 5789999999999999999999999999999999999999999999999999999997643
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.62 E-value=5.5e-08 Score=99.73 Aligned_cols=164 Identities=16% Similarity=0.155 Sum_probs=98.3
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCcc-----chh--------hhhccccEEE--------Eec-C--Cc
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD-----ITL--------DIATRASTVF--------LSH-H--SE 925 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~-----~~~--------~~~~~~~~~~--------~~~-~--~~ 925 (1129)
..|+|||+|+.|+++|..+++.|.+|+++++...+-. ..+ .....+.+.. ... . ..
T Consensus 6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 85 (220)
T d1lvla1 6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDIG 85 (220)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCHH
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceehHH
Confidence 4699999999999999999999999999998654310 000 0000000000 000 0 00
Q ss_pred cc-------c--------ccCCCCCeEEcCCeeEEeCCcEEecCCcEeeccEEEEccCccCcC-CCCC-------CCCCe
Q psy12350 926 RV-------T--------SLCLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYSNHY-PFLH-------ESCGI 982 (1129)
Q Consensus 926 ~~-------~--------~~~~~~~V~~~~~i~~v~~~~V~~~dG~~~~~D~VI~aTG~~~~~-~fl~-------~~~g~ 982 (1129)
.. + ......++++..+-..+........++..+.+|.||+|||.+|.. |... ...++
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~~~~~~~~~~i~a~~viiAtG~~p~~lp~~~~~~~~~~~~~~~ 165 (220)
T d1lvla1 86 QSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDL 165 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETTEEEECSEEEECCCEEECCBTEEECCSSSSGGGSCC
T ss_pred HHhhhheeEEeeeccchhhhhccCceEEEEeeecccCcccccccceeEeeceeeEcCCCCcccccccccccCCcceeeeh
Confidence 00 0 000011344444433333333344566789999999999998863 2111 12344
Q ss_pred eecCCcccccccceeecCCCCcEEEccccccc-hhHHHHHHHHHHHHHHcCCCC
Q psy12350 983 KVVNKNVQPLYKHTINIEHPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQGHIT 1035 (1129)
Q Consensus 983 ~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~~~ 1035 (1129)
.+++..+ .+.. .+.++.|+||++|++.... ..+.+..|++.+|..+.|+.+
T Consensus 166 ~~~~g~i-~vd~-~~~T~~~~I~A~GDv~~~~~l~~~a~~~g~~~a~~i~G~~~ 217 (220)
T d1lvla1 166 KMNGAAI-AIDE-RCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKAR 217 (220)
T ss_dssp CEETTEE-CCCT-TCBCSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred hhcCCcc-cccc-hhhcCCCCEEEEEEeCCcccchhhhhhhHHHHHHHHcCCCC
Confidence 5555443 2322 2456899999999987654 458899999999999999753
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.61 E-value=5.3e-09 Score=102.38 Aligned_cols=132 Identities=14% Similarity=0.143 Sum_probs=84.6
Q ss_pred eeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc----------cCCC----------------CeEEcCCce
Q psy12350 257 KAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL----------RFPN----------------NVVKKPDIA 310 (1129)
Q Consensus 257 ~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~----------~~~~----------------~i~~~~~v~ 310 (1129)
||+| ||||++|+|+|..|++ +.+||++++.+..... ..+. ++.....++
T Consensus 2 rVvI----IGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 76 (167)
T d1xhca1 2 KVVI----VGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAK 76 (167)
T ss_dssp EEEE----ECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEE
T ss_pred eEEE----ECCcHHHHHHHHHHHc-CCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccc
Confidence 4555 8999999999999986 5699999986532110 0000 344566788
Q ss_pred EEcCC-ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc-----c-c
Q psy12350 311 ELTPT-GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP-----F-L 383 (1129)
Q Consensus 311 ~~~~~-~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~-----~-~ 383 (1129)
+++.+ .+++.+++++++|.+|+|+|..++ +++. ..++..+....++-+.+ .++|++|.+|.....+ . .
T Consensus 77 ~i~~~~~~~~~~~~~i~~D~li~a~G~~~~-~~~~-~~gl~~~~~i~v~~~~~---t~~~~i~aiGD~~~~~~~~~~~~~ 151 (167)
T d1xhca1 77 LIDRGRKVVITEKGEVPYDTLVLATGAPNV-DLAR-RSGIHTGRGILIDDNFR---TSAKDVYAIGDCAEYSGIIAGTAK 151 (167)
T ss_dssp EEETTTTEEEESSCEEECSEEEECCCEECC-HHHH-HTTCCBSSSEECCTTSB---CSSTTEEECGGGEEBTTBCCCSHH
T ss_pred ccccccccccccccccccceeEEEEEecCC-chhh-hcCceeCCceeeccccE---ecCCCeEEeeecccCCCeEEChHH
Confidence 88654 488889999999999999998764 4433 23344433222222222 4678899999764221 1 1
Q ss_pred ccccceeeehhhccc
Q psy12350 384 HESCGIKVVNKNVQP 398 (1129)
Q Consensus 384 ~~~~~~~~~a~~~~~ 398 (1129)
....||+.+|.++.+
T Consensus 152 ~a~~~a~~~a~~i~G 166 (167)
T d1xhca1 152 AAMEQARVLADILKG 166 (167)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCC
Confidence 223677777777654
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.59 E-value=5.4e-08 Score=99.98 Aligned_cols=163 Identities=19% Similarity=0.229 Sum_probs=102.5
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-----hh-----------hhhccccE-------EEEec-CCc-
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-----TL-----------DIATRAST-------VFLSH-HSE- 925 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-----~~-----------~~~~~~~~-------~~~~~-~~~- 925 (1129)
.|+|||+|+.|+++|..+++.|.+|+++++...+-.. .+ ........ ..+.. ...
T Consensus 5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (223)
T d1ebda1 5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQE 84 (223)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHhh
Confidence 5999999999999999999999999999886543100 00 00000000 00000 000
Q ss_pred ------cccc-----cCCCCCeEEcCCeeEEeCCc---EEec-CCcEeeccEEEEcc--------CccCcCCCCC-CCCC
Q psy12350 926 ------RVTS-----LCLPNNVVLKPDVAELTPTG---VRFQ-DGSYEQVDIILCCT--------GYSNHYPFLH-ESCG 981 (1129)
Q Consensus 926 ------~~~~-----~~~~~~V~~~~~i~~v~~~~---V~~~-dG~~~~~D~VI~aT--------G~~~~~~fl~-~~~g 981 (1129)
..+. .....+|++..+-.++.... +... ++..+.+|.+|+|+ |++|+++.|. +.+|
T Consensus 85 ~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~f~~~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~l~~~g 164 (223)
T d1ebda1 85 WKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIG 164 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSSTTTTT
T ss_pred HHHHHHHHHHhhHHHhhhccceeeeccEEEEccCcccceeccccceEEecccEEEEcCCCccccccceecCCCCChHhcC
Confidence 0000 00112455544433333222 2222 34457889999985 8888887764 4588
Q ss_pred eeecCCcccccccceeecCCCCcEEEccccccc-hhHHHHHHHHHHHHHHcCCC
Q psy12350 982 IKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 982 ~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
+++++++...+..+ +.++.|+||++|++.... ..+.+..|++.+|..+.|+.
T Consensus 165 v~~~~~G~I~vd~~-~~T~~~gvyA~GDv~~~~~~~~~A~~~g~~aa~~i~g~~ 217 (223)
T d1ebda1 165 IKMTNRGLIEVDQQ-CRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGHP 217 (223)
T ss_dssp CCBCTTSCBCCCTT-CBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTSCC
T ss_pred ceECCCCCEeECCC-CCCCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 99987765555443 466999999999998664 45789999999999999874
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=1.1e-07 Score=87.20 Aligned_cols=100 Identities=15% Similarity=0.110 Sum_probs=72.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
+++|+|||||+.|+.+|..|++ .|.+|+++|+++.+-
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~~l----------------------------------------- 58 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVL----------------------------------------- 58 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSC-----------------------------------------
T ss_pred CCEEEEEcCCccHHHHHHHHhc--CCcEEEEEeeccccc-----------------------------------------
Confidence 4799999999999999999999 679999999976420
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCc----cceEEecceeeeEE
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDT----VGFYLFDLQVRFFL 164 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~l 164 (1129)
+.+ ..++.+++.+..++.|+ .+++|++|+++.+.. ++..++......+. .....+| .|
T Consensus 59 ------~~~--d~~~~~~~~~~l~~~Gv--~i~~~~~v~~i~~~~---~g~~v~~~~~~~g~~~~~~~~~~~D-----~v 120 (125)
T d3grsa2 59 ------RSF--DSMISTNCTEELENAGV--EVLKFSQVKEVKKTL---SGLEVSMVTAVPGRLPVMTMIPDVD-----CL 120 (125)
T ss_dssp ------TTS--CHHHHHHHHHHHHHTTC--EEETTEEEEEEEEET---TEEEEEEEECCTTSCCEEEEEEEES-----EE
T ss_pred ------cch--hhHHHHHHHHHHHHCCC--EEEeCCEEEEEEEcC---CeEEEEEEEccCCcCcCccccccCC-----EE
Confidence 000 13578888888888888 899999999997632 33344433322222 1234577 89
Q ss_pred EEecc
Q psy12350 165 QLMQG 169 (1129)
Q Consensus 165 vvAtG 169 (1129)
++|+|
T Consensus 121 l~a~G 125 (125)
T d3grsa2 121 LWAIG 125 (125)
T ss_dssp EECSC
T ss_pred EEEeC
Confidence 99998
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.58 E-value=5.6e-09 Score=104.09 Aligned_cols=129 Identities=13% Similarity=0.167 Sum_probs=81.6
Q ss_pred CCCCCCcccchhhhcccccEEEEccccCCcccc-c-------CC-----C----------------CeEEcCCceEEcCC
Q psy12350 265 AANGPSGLDITHDISTEATTVFLSHHSEHVKKL-R-------FP-----N----------------NVVKKPDIAELTPT 315 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~-~-------~~-----~----------------~i~~~~~v~~~~~~ 315 (1129)
||||++|+|+|..|++.+.+|+++.+.+..... . .. . .+.....+..++.+
T Consensus 9 IGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (185)
T d1q1ra1 9 VGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQVTAINRD 88 (185)
T ss_dssp ECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCEEEEETT
T ss_pred ECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccceeeeeccc
Confidence 899999999999999999888887665532110 0 00 0 11223344455443
Q ss_pred --ceEEcCCCEeecCEEEEcccccccCCCCC--CCCCeEeecCcccccccccccCCCCCeEEecccccc-----------
Q psy12350 316 --GVRFQDGSYEQVDIILYCTGYTYRYPFLH--ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY----------- 380 (1129)
Q Consensus 316 --~v~~~dg~~~~~D~VI~atG~~~~~~~l~--~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~----------- 380 (1129)
.+...++.++++|.+|+++|.++..|.+. ...++..+....++-|.+ +++|++|.+|.....
T Consensus 89 ~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~~~i~Vd~~~~---ts~~~vya~GD~~~~~~~~~~~~~~~ 165 (185)
T d1q1ra1 89 RQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVDNGIVINEHMQ---TSDPLIMAVGDCARFHSQLYDRWVRI 165 (185)
T ss_dssp TTEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBSSSEECCTTSB---CSSTTEEECGGGEEEEETTTTEEEEC
T ss_pred ccEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccccCccccCCccc---cchhhhhcchhhhccccccCCcccch
Confidence 37888999999999999999887655432 123333333333333333 568889998876322
Q ss_pred ---cccccccceeeehhhccc
Q psy12350 381 ---PFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 381 ---~~~~~~~~~~~~a~~~~~ 398 (1129)
+.+. +||+.+|.++.+
T Consensus 166 ~~a~~A~--~~g~~aa~~i~G 184 (185)
T d1q1ra1 166 ESVPNAL--EQARKIAAILCG 184 (185)
T ss_dssp CSHHHHH--HHHHHHHHHHTT
T ss_pred hhHHHHH--HHHHHHHHHccC
Confidence 2233 777777777654
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=1.4e-07 Score=86.02 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=73.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.+++++|||||+.|+.+|..|.+ .|.+|+|+|+++.+-
T Consensus 22 ~p~~~vIiG~G~ig~E~A~~l~~--lG~~Vtii~~~~~~l---------------------------------------- 59 (122)
T d1v59a2 22 IPKRLTIIGGGIIGLEMGSVYSR--LGSKVTVVEFQPQIG---------------------------------------- 59 (122)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSS----------------------------------------
T ss_pred CCCeEEEECCCchHHHHHHHHHh--hCcceeEEEeccccc----------------------------------------
Confidence 35899999999999999999999 779999999977431
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEec--cccCccceEEecceeeeEEE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIG--IPRDTVGFYLFDLQVRFFLQ 165 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~lv 165 (1129)
+. -..++.++++++.++.|+ ++++|++|+++++.. ++..+.+.. ...++.....+| +|+
T Consensus 60 -------~~--~d~ei~~~l~~~l~~~GV--~i~~~~~v~~v~~~~---~~~~v~~~~~~~~~~~~~~ie~D-----~vl 120 (122)
T d1v59a2 60 -------AS--MDGEVAKATQKFLKKQGL--DFKLSTKVISAKRND---DKNVVEIVVEDTKTNKQENLEAE-----VLL 120 (122)
T ss_dssp -------SS--SCHHHHHHHHHHHHHTTC--EEECSEEEEEEEEET---TTTEEEEEEEETTTTEEEEEEES-----EEE
T ss_pred -------hh--hhhhhHHHHHHHHHhccc--eEEeCCEEEEEEEeC---CCcEEEEEEEeCCCCCeEEEEeC-----EEE
Confidence 00 124688888888888887 999999999998642 333333332 223344566788 888
Q ss_pred Ee
Q psy12350 166 LM 167 (1129)
Q Consensus 166 vA 167 (1129)
+|
T Consensus 121 vA 122 (122)
T d1v59a2 121 VA 122 (122)
T ss_dssp EC
T ss_pred EC
Confidence 86
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=98.57 E-value=2.9e-10 Score=111.13 Aligned_cols=127 Identities=15% Similarity=0.155 Sum_probs=75.8
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC-CCCCCCCCCCccccccCccccccccccccc-cC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE-HIGCDQYGLPVHSSMYKSLKTNLPKDLMEL-CG 816 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~-~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~-~~ 816 (1129)
...++|||+||+||.+|..|.+.| ++|+|||+.+.+||++.... .|+... .....+.+.....+.-.++ .+
T Consensus 43 ~k~V~IIGaGPAGL~AA~~la~~G--~~Vtl~E~~~~~GG~l~~~~~~p~~~~-----~~~~~~~~~~~~~~~gV~i~l~ 115 (179)
T d1ps9a3 43 KKNLAVVGAGPAGLAFAINAAARG--HQVTLFDAHSEIGGQFNIAKQIPGKEE-----FYETLRYYRRMIEVTGVTLKLN 115 (179)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSCTTHHHHTTSTTCTT-----HHHHHHHHHHHHHHHTCEEEES
T ss_pred CcEEEEECccHHHHHHHHHHHhhc--cceEEEeccCccCceEEEEEeCcccch-----HHHHHHHHHHhhhcCCeEEEeC
Confidence 346899999999999999999999 99999999999999877432 121100 0000111100000000000 01
Q ss_pred CCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHH-HHHHhcC
Q psy12350 817 YGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDIT-LDIATTG 892 (1129)
Q Consensus 817 ~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA-~~la~~~ 892 (1129)
-....+ ........++.+|..|+.+.+||.+ .||+|+|||+|.+++|+. ......|
T Consensus 116 ~~Vt~~--~~~~~d~vilAtG~~~~~~~~pg~~------------------~g~~v~vigggd~a~~~~~~~Av~~G 172 (179)
T d1ps9a3 116 HTVTAD--QLQAFDETILASGIPNRALAQPLID------------------SGKTVHLIGGCDVAMELDARRAIAQG 172 (179)
T ss_dssp CCCCSS--SSCCSSEEEECCCEECCTTHHHHHT------------------TTCCEEECGGGTCCSSCCHHHHHHHH
T ss_pred CEEccc--ccccceeEEEeecCCCcccccchhc------------------cCCEEEEECCcHhhhhccchhhhhcc
Confidence 111111 1112234555688888888777754 378999999999999873 3333344
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=4.1e-09 Score=102.55 Aligned_cols=56 Identities=20% Similarity=0.367 Sum_probs=47.4
Q ss_pred CCCCCCCCCCCcCCcEEecCCCCCCCCCCCCeEEEEccCcchhhhHHHhhcccCeEEE
Q psy12350 502 PVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHDISTEATTVSA 559 (1129)
Q Consensus 502 p~~p~~~g~~~f~g~v~hs~~~~~~~~~~~k~v~ViG~g~sa~~~~~~l~~~~~~v~~ 559 (1129)
|+.|+|||.+ ...++|+.++.......||||+|||+|++|+|+|..+.+.+++++.
T Consensus 2 Pr~p~IpG~d--~~~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~ 57 (162)
T d1ps9a2 2 PRTPPIDGID--HPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQ 57 (162)
T ss_dssp ECCCCCBTTT--STTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGG
T ss_pred CCCCCCCCCC--CCCeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccce
Confidence 7899999987 3458888888777777899999999999999999999998765433
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.56 E-value=7.9e-09 Score=94.92 Aligned_cols=61 Identities=18% Similarity=0.157 Sum_probs=54.5
Q ss_pred CCCCCCC----cCCcEEecCCCCCCC--CCCCCeEEEEccCcchhhhHHHhhcccCeEEEEEEecce
Q psy12350 506 DFKGKDV----CQIPIMHSHEYRTPE--PFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLRFDNK 566 (1129)
Q Consensus 506 ~~~g~~~----f~g~v~hs~~~~~~~--~~~~k~v~ViG~g~sa~~~~~~l~~~~~~v~~~~r~~~~ 566 (1129)
.+||..+ |.|+-+|.|..||+. .|+||+|+|||+|+||+|.|..|++.+++|++++|++.+
T Consensus 3 ~~pGe~E~~~~f~gkGVsyca~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ 69 (130)
T d1vdca2 3 SFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF 69 (130)
T ss_dssp CCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred CCCccccccccccCCcEEEEEEecCchHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccc
Confidence 4566555 899999999999975 699999999999999999999999999999999997644
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.56 E-value=1.7e-07 Score=85.67 Aligned_cols=101 Identities=15% Similarity=0.171 Sum_probs=74.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
+.++|+|||||+.|+..|..|++ .+.+|+++|+.+.+. +
T Consensus 21 ~~~~vvVvGgG~ig~E~A~~l~~--~g~~vt~i~~~~~~l-----------------------~---------------- 59 (121)
T d1mo9a2 21 PGSTVVVVGGSKTAVEYGCFFNA--TGRRTVMLVRTEPLK-----------------------L---------------- 59 (121)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCTTT-----------------------T----------------
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--cchhheEeeccchhh-----------------------c----------------
Confidence 34799999999999999999999 679999999976421 0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
. -..++.+++++..++.++ +++++++|+++++.. +++...+.....+......+| .||+|
T Consensus 60 --------~--~d~~~~~~~~~~l~~~gI--~v~~~~~v~~i~~~~---~~~~~~~~~~~~~~~~~i~~D-----~Vi~a 119 (121)
T d1mo9a2 60 --------I--KDNETRAYVLDRMKEQGM--EIISGSNVTRIEEDA---NGRVQAVVAMTPNGEMRIETD-----FVFLG 119 (121)
T ss_dssp --------C--CSHHHHHHHHHHHHHTTC--EEESSCEEEEEEECT---TSBEEEEEEEETTEEEEEECS-----CEEEC
T ss_pred --------c--cccchhhhhhhhhhcccc--EEEcCCEEEEEEecC---CceEEEEEEEeCCCCEEEEcC-----EEEEE
Confidence 0 113567788888888877 899999999998632 223223333334445567889 99999
Q ss_pred cc
Q psy12350 168 QG 169 (1129)
Q Consensus 168 tG 169 (1129)
+|
T Consensus 120 ~G 121 (121)
T d1mo9a2 120 LG 121 (121)
T ss_dssp CC
T ss_pred EC
Confidence 98
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.56 E-value=1.1e-07 Score=86.58 Aligned_cols=103 Identities=10% Similarity=0.022 Sum_probs=71.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.+++++|||||+.|+..|..|++ .|.+|+|++++.-+ +
T Consensus 19 ~P~~vvIIGgG~iG~E~A~~l~~--lG~~Vtii~~~~~l--------------------------------------~-- 56 (122)
T d1h6va2 19 CPGKTLVVGASYVALECAGFLAG--IGLDVTVMVRSILL--------------------------------------R-- 56 (122)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSS--------------------------------------T--
T ss_pred CCCeEEEECCCccHHHHHHHHhh--cCCeEEEEEechhh--------------------------------------c--
Confidence 35799999999999999999999 67999999874210 0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCC-CceEEeccccCccceEEecceeeeEEEE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEH-PSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
. -..++.+++.+..++.|+ ++++|+.|+++++......+ -.++.......+.....+| .|++
T Consensus 57 --------~--~D~~~~~~l~~~l~~~Gv--~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D-----~vl~ 119 (122)
T d1h6va2 57 --------G--FDQDMANKIGEHMEEHGI--KFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFN-----TVLL 119 (122)
T ss_dssp --------T--SCHHHHHHHHHHHHHTTE--EEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEES-----EEEC
T ss_pred --------c--CCHHHHHHHHHHHHHCCC--EEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECC-----EEEE
Confidence 0 013688888888888887 89999999988753221111 1222333223333445688 9999
Q ss_pred ecc
Q psy12350 167 MQG 169 (1129)
Q Consensus 167 AtG 169 (1129)
|+|
T Consensus 120 AiG 122 (122)
T d1h6va2 120 AVG 122 (122)
T ss_dssp CCC
T ss_pred EeC
Confidence 998
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.52 E-value=1.5e-07 Score=93.91 Aligned_cols=111 Identities=18% Similarity=0.308 Sum_probs=70.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
+.+||+||||||+||+||.+|++ .+.+|+|+||.+ .||.+... ..+..+..
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar--~g~~v~iie~~~-~~g~~~~~-------------------------~~i~~~~~- 54 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGME-KGGQLTTT-------------------------TEVENWPG- 54 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHT--TTCCCEEECCSS-TTGGGGGC-------------------------SBCCCSTT-
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--cCCceEEEEeec-cccccccc-------------------------chhhhhhc-
Confidence 45799999999999999999999 679999999854 46655421 11111211
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
.+......++.+.+...+.+++. .+.+. +|+.+... .....+.+ .......+ .+++|
T Consensus 55 ------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~V~~~~~~-----~~~~~v~~----~~~~~~~~-----~viva 111 (190)
T d1trba1 55 ------DPNDLTGPLLMERMHEHATKFET--EIIFD-HINKVDLQ-----NRPFRLNG----DNGEYTCD-----ALIIA 111 (190)
T ss_dssp ------CCSSCBHHHHHHHHHHHHHHTTC--EEECC-CEEEEECS-----SSSEEEEE----SSCEEEEE-----EEEEC
T ss_pred ------cccccchHHHHHHHHHHHHhcCc--EEecc-eeEEEecC-----CCcEEEEE----eeeeEeee-----eeeee
Confidence 11234567888888888888876 44443 57666542 11112211 11233455 89999
Q ss_pred ccc
Q psy12350 168 QGH 170 (1129)
Q Consensus 168 tG~ 170 (1129)
+|.
T Consensus 112 ~G~ 114 (190)
T d1trba1 112 TGA 114 (190)
T ss_dssp CCE
T ss_pred cce
Confidence 994
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.50 E-value=1.6e-07 Score=85.79 Aligned_cols=99 Identities=11% Similarity=0.049 Sum_probs=74.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.+++++|||||.-|+.+|..+.+ .|.+|+|+|+.+.+- +
T Consensus 24 ~p~~~viiG~G~iglE~A~~~~~--~G~~Vtvi~~~~~~l-----------------------~---------------- 62 (123)
T d1dxla2 24 IPKKLVVIGAGYIGLEMGSVWGR--IGSEVTVVEFASEIV-----------------------P---------------- 62 (123)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHH--HTCEEEEECSSSSSS-----------------------T----------------
T ss_pred cCCeEEEEccchHHHHHHHHHHh--cCCeEEEEEEccccC-----------------------c----------------
Confidence 35899999999999999999999 669999999977420 0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
. -..++.+++.+..++.|+ ++++|++|++++... ++..+.+.....++.....+| .|++|
T Consensus 63 ---------~-~d~~~~~~l~~~l~~~GI--~i~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~i~~D-----~vLvA 122 (123)
T d1dxla2 63 ---------T-MDAEIRKQFQRSLEKQGM--KFKLKTKVVGVDTSG---DGVKLTVEPSAGGEQTIIEAD-----VVLVS 122 (123)
T ss_dssp ---------T-SCHHHHHHHHHHHHHSSC--CEECSEEEEEEECSS---SSEEEEEEESSSCCCEEEEES-----EEECC
T ss_pred ---------h-hhhcchhhhhhhhhcccc--eEEcCCceEEEEEcc---CeEEEEEEECCCCeEEEEEcC-----EEEEc
Confidence 0 113678888888888887 899999999998632 344455554444445566788 88887
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.50 E-value=2.1e-08 Score=91.03 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=57.0
Q ss_pred CCCCCCcccchhhhcccc---cEEEEccccCCcccccCCC--------------CeEEcCCceEEcC--Cc---eEEcCC
Q psy12350 265 AANGPSGLDITHDISTEA---TTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAELTP--TG---VRFQDG 322 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~---~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~~~--~~---v~~~dg 322 (1129)
||||++|+|+|..+++++ .+||+++|.+.+++..++. ++..+..+++++. ++ |.++||
T Consensus 26 vGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G 105 (117)
T d1aoga2 26 VGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESG 105 (117)
T ss_dssp ECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTS
T ss_pred ECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCC
Confidence 899999999998766654 5799999999988654322 5777889999963 22 889999
Q ss_pred CEeecCEEEEcc
Q psy12350 323 SYEQVDIILYCT 334 (1129)
Q Consensus 323 ~~~~~D~VI~at 334 (1129)
+++++|.||+|.
T Consensus 106 ~~i~~D~Vi~AI 117 (117)
T d1aoga2 106 KKMDFDLVMMAI 117 (117)
T ss_dssp CEEEESEEEECS
T ss_pred cEEEeCEEEEeC
Confidence 999999999984
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.49 E-value=7.3e-09 Score=106.51 Aligned_cols=41 Identities=32% Similarity=0.532 Sum_probs=37.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
++||+||||||||++||.++++ .|.+|+|+|++ .+||+|.+
T Consensus 5 ~~DlvVIG~GpaGl~aA~~aa~--~G~~V~liE~~-~~GG~c~~ 45 (220)
T d1lvla1 5 QTTLLIIGGGPGGYVAAIRAGQ--LGIPTVLVEGQ-ALGGTCLN 45 (220)
T ss_dssp ECSEEEECCSHHHHHHHHHHHH--HTCCEEEECSS-CTTHHHHH
T ss_pred ccCEEEECCCHHHHHHHHHHHH--CCCcEEEEecC-CCCCcccc
Confidence 5899999999999999999999 66999999995 69999985
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=98.46 E-value=1.6e-07 Score=100.07 Aligned_cols=43 Identities=23% Similarity=0.392 Sum_probs=38.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..||+|||||||||+||.+|+++ .|++|+||||++.+||.|.+
T Consensus 33 e~DViVIGaGpaGL~aA~~LA~~-~G~~V~vlE~~~~~GG~~~~ 75 (278)
T d1rp0a1 33 ETDVVVVGAGSAGLSAAYEISKN-PNVQVAIIEQSVSPGGGAWL 75 (278)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTS-TTSCEEEEESSSSCCTTTTC
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-cCCeEEEEecCCCCCCceee
Confidence 47999999999999999999762 47999999999999999875
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.44 E-value=2.6e-08 Score=105.16 Aligned_cols=43 Identities=23% Similarity=0.240 Sum_probs=39.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
+.+||+||||||+|+.||..+++ .|.+|+++|+.+.+||+|.+
T Consensus 41 k~yDvvVIGgG~aG~~aA~~~a~--~G~kv~vve~~~~lGG~c~n 83 (261)
T d1mo9a1 41 REYDAIFIGGGAAGRFGSAYLRA--MGGRQLIVDRWPFLGGSCPH 83 (261)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSCHHHH
T ss_pred ccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCcccccccc
Confidence 45799999999999999999999 66899999999999999974
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.44 E-value=1.3e-07 Score=86.63 Aligned_cols=107 Identities=14% Similarity=0.129 Sum_probs=74.4
Q ss_pred CCCCCCC----CCCcEEeeccCCCC--CCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccE
Q psy12350 844 EFKGKDM----CQIPILHSRDYRTP--EPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRAST 917 (1129)
Q Consensus 844 ~i~G~~~----f~g~~~hs~~~~~~--~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~ 917 (1129)
.+||-++ |.|+-+|.+..++. .-|+||+|+|||+|+||+|-|..|++.+++||++.|+...... +.+.+.
T Consensus 3 ~~pGe~E~~~~f~gkGVsyca~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra~-~~~~~~--- 78 (130)
T d1vdca2 3 SFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRAS-KIMQQR--- 78 (130)
T ss_dssp CCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSC-HHHHHH---
T ss_pred CCCccccccccccCCcEEEEEEecCchHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccccc-hhhhhc---
Confidence 5677554 88888998888774 4789999999999999999999999999999999886432110 000000
Q ss_pred EEEecCCccccccCCCCCeEEcCC--eeEEeCCc-------EEec---CCc--EeeccEEEEc
Q psy12350 918 VFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG-------VRFQ---DGS--YEQVDIILCC 966 (1129)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~-------V~~~---dG~--~~~~D~VI~a 966 (1129)
+. ..++|+++.+ +.++.+++ +++. +|+ ++++|.|+++
T Consensus 79 ----------l~--~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVa 129 (130)
T d1vdca2 79 ----------AL--SNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFA 129 (130)
T ss_dssp ----------HH--TCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred ----------cc--cCCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEE
Confidence 00 1236777765 77776532 4442 343 5799999886
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=98.42 E-value=9.5e-10 Score=113.10 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=36.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
.+++|||+|++|+.+|..+.+.| .+|+|+|++ .+||+|..
T Consensus 3 yDvvVIG~G~aG~~aA~~a~~~G--~kV~iiE~~-~~GGtc~~ 42 (217)
T d1gesa1 3 YDYIAIGGGSGGIASINRAAMYG--QKCALIEAK-ELGGTCVN 42 (217)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--CCEEEEESS-CTTHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CEEEEEecc-CcCCeEec
Confidence 36899999999999999999999 999999985 69999964
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=98.41 E-value=3.4e-07 Score=97.26 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=33.0
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
++.+||+|||||.+|+++|..|++ .|++|+|+||++.
T Consensus 2 ~~~~DvvIIGaGi~Gls~A~~La~--~G~~V~vlE~~~~ 38 (276)
T d1ryia1 2 KRHYEAVVIGGGIIGSAIAYYLAK--ENKNTALFESGTM 38 (276)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSST
T ss_pred CccCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCC
Confidence 456899999999999999999999 5699999999653
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.40 E-value=2.9e-08 Score=102.72 Aligned_cols=42 Identities=26% Similarity=0.419 Sum_probs=36.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCC-CCceEEEEcccCCcCceEec
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPG-SGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~-~~~~v~v~E~~~~~GG~w~~ 52 (1129)
.||+||||||||++||.++++.+ .+.+|+++|+ ..+||+|.+
T Consensus 2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~cln 44 (233)
T d1xdia1 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAVL 44 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCceeec
Confidence 38999999999999999987754 3578999999 679999985
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.39 E-value=6.5e-07 Score=89.17 Aligned_cols=143 Identities=13% Similarity=0.118 Sum_probs=83.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccch-hhhhcccc--E------EEEecCCcccccc-CCCCCeEE
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDIT-LDIATRAS--T------VFLSHHSERVTSL-CLPNNVVL 938 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~-~~~~~~~~--~------~~~~~~~~~~~~~-~~~~~V~~ 938 (1129)
.++|+|||||++|++.|..+++.|.+|.++++........ ..+..... . ......+...+.. ...-++++
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i 84 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI 84 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence 4789999999999999999999999999997644321100 00000000 0 0000000000000 00013444
Q ss_pred cCC-eeEEeCCc---EEecCCcEeeccEEEEccCcc-----CcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcc
Q psy12350 939 KPD-VAELTPTG---VRFQDGSYEQVDIILCCTGYS-----NHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGV 1009 (1129)
Q Consensus 939 ~~~-i~~v~~~~---V~~~dG~~~~~D~VI~aTG~~-----~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~ 1009 (1129)
... |.+++..+ ....+..+..+|.+++++|.. |+..++.. ++++++++........+.++.|++|++|+
T Consensus 85 ~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~--~veld~~G~i~~~~~~~~Ts~~GV~a~GD 162 (192)
T d1vdca1 85 FTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEPATKFLDG--GVELDSDGYVVTKPGTTQTSVPGVFAAGD 162 (192)
T ss_dssp ECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCEEESCGGGTT--SSCBCTTSCBCCCTTSCBCSSTTEEECGG
T ss_pred eeeeEEecccccCcEEecccceeeeeeeEEEEeeeeecccCchHHHhcC--ceeecCCCeEEeCCCceEecCCCEEEeee
Confidence 333 56664322 233455567999999999964 55555543 56777666554544566779999999999
Q ss_pred cccc
Q psy12350 1010 PRHT 1013 (1129)
Q Consensus 1010 ~~~~ 1013 (1129)
+...
T Consensus 163 v~~~ 166 (192)
T d1vdca1 163 VQDK 166 (192)
T ss_dssp GGCS
T ss_pred cCCc
Confidence 8654
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.38 E-value=6e-07 Score=89.48 Aligned_cols=114 Identities=15% Similarity=0.204 Sum_probs=70.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc----CceEecCCCCCCCCCCCCccCcccccccccCCccccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV----GGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIME 83 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~----GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~ 83 (1129)
..+||+|||||||||+||.+|++ .+.+|+|+|+.... ||... .......
T Consensus 4 ~~~~VvIIGgGpaGl~aA~~~ar--~g~~v~vie~~~~~~~~~~~~~~-------------------------~~~~~~~ 56 (192)
T d1vdca1 4 HNTRLCIVGSGPAAHTAAIYAAR--AELKPLLFEGWMANDIAPGGQLT-------------------------TTTDVEN 56 (192)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSBTTBCTTCGGG-------------------------GCSEECC
T ss_pred ccceEEEECCCHHHHHHHHHHHH--cCCcEEEEEeecccccccccccc-------------------------cchhhhc
Confidence 35899999999999999999999 66899999986532 11111 0011111
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeE
Q psy12350 84 LSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163 (1129)
Q Consensus 84 ~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 163 (1129)
+.++ +......++...+++.+.+|+. .+.+. +|+.++.. .....+.+ .......| .
T Consensus 57 ~~~~-------~~~~~~~el~~~~~~q~~~~g~--~i~~~-~V~~~~~~-----~~~~~v~~----~~~~~~~~-----~ 112 (192)
T d1vdca1 57 FPGF-------PEGILGVELTDKFRKQSERFGT--TIFTE-TVTKVDFS-----SKPFKLFT----DSKAILAD-----A 112 (192)
T ss_dssp STTC-------TTCEEHHHHHHHHHHHHHHTTC--EEECC-CCCEEECS-----SSSEEEEC----SSEEEEEE-----E
T ss_pred cccc-------cccccchHHHHHHHHHHHhhcc--eeeee-eEEecccc-----cCcEEecc----cceeeeee-----e
Confidence 1111 1234577888888888999987 56544 57666542 11122221 12234456 8
Q ss_pred EEEecccCC
Q psy12350 164 LQLMQGHVT 172 (1129)
Q Consensus 164 lvvAtG~~~ 172 (1129)
+++|+|...
T Consensus 113 ~~~a~g~~~ 121 (192)
T d1vdca1 113 VILAIGAVA 121 (192)
T ss_dssp EEECCCEEE
T ss_pred EEEEeeeee
Confidence 999999543
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.36 E-value=8.2e-07 Score=91.50 Aligned_cols=87 Identities=22% Similarity=0.191 Sum_probs=63.3
Q ss_pred EEecCCc--EeeccEEEEccCccCcCCCC---------C-CCCCeeecCCcccccccceeecCCCCcEEEccccccc-hh
Q psy12350 950 VRFQDGS--YEQVDIILCCTGYSNHYPFL---------H-ESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL-LF 1016 (1129)
Q Consensus 950 V~~~dG~--~~~~D~VI~aTG~~~~~~fl---------~-~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-~~ 1016 (1129)
+...||+ ++++|.||+|||.+|..+.. . +..|+++++.+...+..+ +.++.|+||++||+.... ..
T Consensus 132 v~~~dg~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~-~~T~~~gIyA~GDv~~~~~l~ 210 (233)
T d1xdia1 132 ATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQLGRGNYLTVDRV-SRTLATGIYAAGDCTGLLPLA 210 (233)
T ss_dssp EECTTSCEEEEEESEEEECCCEEECCCGGCEEECCSSSCTTTTTCCCBTTTBCCCCSS-SBCSSTTEEECSGGGTSCSCH
T ss_pred EEecCCceeeeecceeeeecCcccccccccccccccccccchhhhcccCCCcCCcCCC-cccCCCCEEEEEEeCCCchhH
Confidence 3445776 47999999999998864321 1 124667777665444433 456899999999987654 45
Q ss_pred HHHHHHHHHHHHHHcCCCCCC
Q psy12350 1017 NLFDLQVRLFQQLMQGHITLP 1037 (1129)
Q Consensus 1017 ~~~e~qa~~~a~~l~g~~~lp 1037 (1129)
+.+..|++.+|..+.|...-|
T Consensus 211 ~~A~~~g~~aa~~~~g~~~~p 231 (233)
T d1xdia1 211 SVAAMQGRIAMYHALGEGVSP 231 (233)
T ss_dssp HHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCCC
Confidence 799999999999999876544
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.33 E-value=1.1e-07 Score=100.21 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=40.2
Q ss_pred CCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 6 ~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
|...+||+|||||++||+||..|++ .|++|+|+||++.+||.+.
T Consensus 2 m~~~yDviViGaG~~Gl~~A~~La~--~G~~V~vlE~~~~~GG~~~ 45 (297)
T d2bcgg1 2 IDTDYDVIVLGTGITECILSGLLSV--DGKKVLHIDKQDHYGGEAA 45 (297)
T ss_dssp CCCBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCGGGC
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHH--CCCCEEEEcCCCCCCcceE
Confidence 3457999999999999999999999 6699999999999999875
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.33 E-value=5.2e-07 Score=89.25 Aligned_cols=38 Identities=18% Similarity=0.386 Sum_probs=34.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
+||+||||||+||+||.++++ .|.+|+|+|++ +||.+.
T Consensus 2 yDViIIGgGpaGl~AAi~aar--~G~~v~iie~~--~gg~~~ 39 (184)
T d1fl2a1 2 YDVLIVGSGPAGAAAAIYSAR--KGIRTGLMGER--FGGQIL 39 (184)
T ss_dssp EEEEEECCSHHHHHHHHHHHT--TTCCEEEECSS--TTGGGG
T ss_pred CcEEEECcCHHHHHHHHHHHH--cCCeEEEEEEe--cCCccc
Confidence 799999999999999999999 66999999984 677766
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=98.33 E-value=6.6e-07 Score=89.72 Aligned_cols=41 Identities=20% Similarity=0.351 Sum_probs=35.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc-CCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT-DNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~-~~~GG~w~ 51 (1129)
.+||+||||||||++||.++++ .|.++.|++++ +.+|+++.
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR--~G~ktllit~~~~~ig~~~c 43 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQ--KGVRVGLLTQSLDAVMMPFL 43 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCCSS
T ss_pred CCcEEEECcCHHHHHHHHHHHH--CCCcEEEEEeccchhccccc
Confidence 4899999999999999999999 67999999986 45665554
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.32 E-value=1.3e-07 Score=103.26 Aligned_cols=40 Identities=35% Similarity=0.611 Sum_probs=37.6
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
|||+|||||+|||+||..|++ .|++|+|||+++.+||.+.
T Consensus 2 KkV~IIGaG~aGL~aA~~La~--~G~~V~vlE~~~~~GG~~~ 41 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEGKAGGKLR 41 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHT--TSCEEEEECSSSSSCSSCC
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCCEEEEeCCCCCcCceE
Confidence 689999999999999999999 6799999999999999765
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.32 E-value=3.2e-08 Score=102.70 Aligned_cols=41 Identities=32% Similarity=0.566 Sum_probs=35.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC--------CcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD--------NVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~--------~~GG~w~ 51 (1129)
.+||+|||||||||+||.++++ .|++|+|+|+.+ .+||.|.
T Consensus 3 dYDviVIG~GpaGl~aA~~aa~--~G~kV~viE~~~~~~~~~~~~~GG~c~ 51 (235)
T d1h6va1 3 DFDLIIIGGGSGGLAAAKEAAK--FDKKVMVLDFVTPTPLGTNWGLGGTCV 51 (235)
T ss_dssp SEEEEEECCSHHHHHHHHHHGG--GCCCEEEECCCCCCTTCCCCCTTHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCcccccccccccc
Confidence 4899999999999999999999 679999999754 3566665
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=98.32 E-value=5.2e-07 Score=96.07 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=33.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..+||+|||||.+|+++|.+|++ .|++|+|+||++..
T Consensus 2 ~~yDvvIIGaGi~Gls~A~~La~--~G~~V~viE~~~~~ 38 (281)
T d2gf3a1 2 THFDVIVVGAGSMGMAAGYQLAK--QGVKTLLVDAFDPP 38 (281)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCC
Confidence 35899999999999999999999 66999999997654
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.31 E-value=9.9e-07 Score=95.26 Aligned_cols=40 Identities=30% Similarity=0.537 Sum_probs=35.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
+..||+|||||+|||+||..|++ .|.+|+|+||.+..||.
T Consensus 15 e~~DVlVIG~G~aGl~aA~~la~--~G~~V~lvEK~~~~gG~ 54 (308)
T d1y0pa2 15 DTVDVVVVGSGGAGFSAAISATD--SGAKVILIEKEPVIGGN 54 (308)
T ss_dssp EECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTT
T ss_pred CcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCc
Confidence 45899999999999999999999 66999999998877763
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=98.31 E-value=1.2e-06 Score=95.09 Aligned_cols=40 Identities=28% Similarity=0.461 Sum_probs=35.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
+..||+|||||+|||+||..|++ .|++|+|+||.+..||.
T Consensus 22 et~DVvVIG~G~aGl~aA~~la~--~G~~V~llEk~~~~gG~ 61 (322)
T d1d4ca2 22 ETTDVVIIGSGGAGLAAAVSARD--AGAKVILLEKEPIPGGN 61 (322)
T ss_dssp EECSEEEECSSHHHHHHHHHHHT--TTCCEEEECSSSSSCTT
T ss_pred CcceEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCc
Confidence 35799999999999999999999 66999999998877764
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.30 E-value=1.5e-07 Score=101.74 Aligned_cols=41 Identities=27% Similarity=0.519 Sum_probs=38.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
+++|+|||||+|||+||..|++ .|++|+||||++.+||.|.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k--~G~~V~viEk~~~iGG~~~ 42 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAE--KGHQVHIIDQRDHIGGNSY 42 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSSGGGC
T ss_pred CCEEEEECCcHHHHHHHHHHHh--CCCCEEEEECCCCCcCeee
Confidence 4899999999999999999999 6799999999999999874
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.30 E-value=1e-06 Score=92.63 Aligned_cols=37 Identities=32% Similarity=0.540 Sum_probs=33.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..+||+|||||||||+||..|++ .|++|+||||++.+
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~--~G~~v~v~Er~~~~ 39 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRD--AGVDVDVYERSPQP 39 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCC
Confidence 35799999999999999999999 67999999997664
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.30 E-value=8.4e-08 Score=99.26 Aligned_cols=44 Identities=27% Similarity=0.557 Sum_probs=40.8
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
.+++||+|||||||||+||.+|++ .|.+|+|+|+++.+||+|.+
T Consensus 3 ~~~yDviVIG~GpAGl~aA~~aa~--~G~kV~lie~~~~~GG~~~~ 46 (233)
T d1v59a1 3 NKSHDVVIIGGGPAGYVAAIKAAQ--LGFNTACVEKRGKLGGTCLN 46 (233)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSHHHHH
T ss_pred CcccCEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCCcceEeEE
Confidence 456999999999999999999999 67999999999999999984
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=8.6e-08 Score=97.39 Aligned_cols=130 Identities=14% Similarity=0.187 Sum_probs=82.0
Q ss_pred CCCCCCcccchhhhcccc--cEEEEccccCCcc------c-------------------------------cc-------
Q psy12350 265 AANGPSGLDITHDISTEA--TTVFLSHHSEHVK------K-------------------------------LR------- 298 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~--~~V~lv~r~~~~~------~-------------------------------~~------- 298 (1129)
||||..|+++|..|.+.+ .+|+++.+.+... . ..
T Consensus 10 vG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (213)
T d1m6ia1 10 IGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQD 89 (213)
T ss_dssp ESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGSBCTTT
T ss_pred ECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhhhhhhhh
Confidence 799999999999998765 5799987643210 0 00
Q ss_pred ---C-CC--CeEEcCCceEEcCC--ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecC-cccccccccccCCCC
Q psy12350 299 ---F-PN--NVVKKPDIAELTPT--GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNK-NVQPLYKHLINIEHP 369 (1129)
Q Consensus 299 ---~-~~--~i~~~~~v~~~~~~--~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~-~~~~l~~~~~~~~~p 369 (1129)
. .. ++....+|++++.+ .|.++||+++++|.||+|||-.+..+.|....++.+++. ....+..++- ..|
T Consensus 90 ~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~vd~~l~--~~~ 167 (213)
T d1m6ia1 90 LPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQ--ARS 167 (213)
T ss_dssp TTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEECCTTCE--EET
T ss_pred HHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhhhHhcC--cCC
Confidence 0 00 34556778888644 599999999999999999998876655443334444321 1111112221 236
Q ss_pred CeEEecccccc-------------cccccccceeeehhhccc
Q psy12350 370 SMCIIGYTYRY-------------PFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 370 ~l~~~G~~~~~-------------~~~~~~~~~~~~a~~~~~ 398 (1129)
++|.+|....+ +.+. +|++.+|+++.+
T Consensus 168 ~VyA~GD~a~~~~~~~g~~~i~~~~~A~--~~gr~aa~ni~g 207 (213)
T d1m6ia1 168 NIWVAGDAACFYDIKLGRRRVEHHDHAV--VSGRLAGENMTG 207 (213)
T ss_dssp TEEECGGGEEEEETTTEEECCCCHHHHH--HHHHHHHHHHTS
T ss_pred ceEEeeeeeeeccccCCcEEeeEhHHHH--HHHHHHHHHhcC
Confidence 78887765322 2233 677777777765
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=1.1e-06 Score=89.64 Aligned_cols=162 Identities=19% Similarity=0.123 Sum_probs=94.3
Q ss_pred EEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCcc-----chh--hhh----------ccccEEEEec--CCc-------
Q psy12350 872 AVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD-----ITL--DIA----------TRASTVFLSH--HSE------- 925 (1129)
Q Consensus 872 VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~-----~~~--~~~----------~~~~~~~~~~--~~~------- 925 (1129)
|+|||+|+.|+++|..+++.|++|.+++....+-. ..+ .+. .......... ...
T Consensus 6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (221)
T d3grsa1 6 YLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKEK 85 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhhh
Confidence 89999999999999999999999999987653210 000 000 0000000000 000
Q ss_pred --ccc-------cc-CCCCCeEEcCCeeEEe-CCcEEe-cCCcEeeccEEEEccCccCcCCC--------CC-CCCCeee
Q psy12350 926 --RVT-------SL-CLPNNVVLKPDVAELT-PTGVRF-QDGSYEQVDIILCCTGYSNHYPF--------LH-ESCGIKV 984 (1129)
Q Consensus 926 --~~~-------~~-~~~~~V~~~~~i~~v~-~~~V~~-~dG~~~~~D~VI~aTG~~~~~~f--------l~-~~~g~~~ 984 (1129)
..+ .. ....+|++..+-.++. .+.+.. .+...+.+|.++++||..|..|. |. +..|+++
T Consensus 86 ~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L~~~gv~~ 165 (221)
T d3grsa1 86 RDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGIQT 165 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEETTEEEECSCEEECCCEEECCCCTEEESCTTTTGGGTTCCB
T ss_pred hheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeeeccccccceeEEecCccccCCCccccCCCCcCchhcCcEE
Confidence 000 00 0011344433211121 112222 23346789999999997766542 21 2357778
Q ss_pred cCCcccccccceeecCCCCcEEEccccccc-hhHHHHHHHHHHHHHHcCCC
Q psy12350 985 VNKNVQPLYKHTINIEHPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 985 ~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
++++...+..+ ..++.|+||++|++.... ..+.+..|++.+|+.+.+..
T Consensus 166 ~~~G~I~vd~~-~~T~~~gvyA~GDv~~~~~l~~~A~~~G~~aa~~~~~~~ 215 (221)
T d3grsa1 166 DDKGHIIVDEF-QNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYK 215 (221)
T ss_dssp CTTSCBCCCTT-CBCSSTTEEECGGGGTSSCCHHHHHHHHHHHHHHHHSCC
T ss_pred CCCccEEeCCC-ccccCCcEEEEEEccCCcCcHHHHHHHHHHHHHHHcCCC
Confidence 77665434333 456999999999997654 56889999999999877643
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=2e-07 Score=100.04 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=37.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
+||+|||||+|||+||+.|++ .|++|+|||+++.+||.|.
T Consensus 2 ~dv~IIGaG~sGl~~A~~L~~--~g~~V~iiEk~~~iGG~~~ 41 (298)
T d1i8ta1 2 YDYIIVGSGLFGAVCANELKK--LNKKVLVIEKRNHIGGNAY 41 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHGG--GTCCEEEECSSSSSSGGGC
T ss_pred ccEEEECCcHHHHHHHHHHHh--CCCcEEEEECCCCcccceE
Confidence 699999999999999999999 5699999999999999986
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=98.24 E-value=2.2e-07 Score=102.45 Aligned_cols=44 Identities=32% Similarity=0.521 Sum_probs=39.5
Q ss_pred CCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 6 ~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
+.+++||+|||||+|||+||..|++ .|++|+|||+++.+||.+.
T Consensus 27 ~~~pkkV~IIGaG~aGLsaA~~L~~--~G~~V~vlE~~~~~GG~~~ 70 (370)
T d2iida1 27 TSNPKHVVIVGAGMAGLSAAYVLAG--AGHQVTVLEASERPGGRVR 70 (370)
T ss_dssp CSSCCEEEEECCBHHHHHHHHHHHH--HTCEEEEECSSSSSBTTCC
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCeeE
Confidence 3456899999999999999999999 5699999999999999654
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.21 E-value=2e-06 Score=85.36 Aligned_cols=144 Identities=13% Similarity=0.156 Sum_probs=77.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchh--hhhcccc--EEEEecCCccccc-cCCCCCeEEcCC-
Q psy12350 868 AGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITL--DIATRAS--TVFLSHHSERVTS-LCLPNNVVLKPD- 941 (1129)
Q Consensus 868 ~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~-~~~~~~V~~~~~- 941 (1129)
++++|+|||||++|++.|..+++.|.+|+++++...+..... ....... .......+.+... ......+.....
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH 83 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecce
Confidence 357899999999999999999999999999987554322111 0000000 0000000000000 000012333332
Q ss_pred eeEEeCCc---EEecCCcEeeccEEEEccCccCc-----CCCCCCCCCeeecCCccc---ccccceeecCCCCcEEEccc
Q psy12350 942 VAELTPTG---VRFQDGSYEQVDIILCCTGYSNH-----YPFLHESCGIKVVNKNVQ---PLYKHTINIEHPTMFILGVP 1010 (1129)
Q Consensus 942 i~~v~~~~---V~~~dG~~~~~D~VI~aTG~~~~-----~~fl~~~~g~~~~~~~~~---~ly~~~~~~~~p~l~~iG~~ 1010 (1129)
|.++..+. ........++++.+|++||..+. ..++.. .+++++..+. ......+.++.|++|+.|++
T Consensus 84 V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~~~~~~~~~~~~--~~e~~~g~i~~~~~~~~~~~~T~v~gV~aaGDv 161 (190)
T d1trba1 84 INKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAIFEG--QLELENGYIKVQSGIHGNATQTSIPGVFAAGDV 161 (190)
T ss_dssp EEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCEEESCGGGTT--TSCEETTEECCCCSSSSCTTBCSSTTEEECGGG
T ss_pred eEEEecCCCcEEEEEeeeeEeeeeeeeecceeeeeecccceeecc--eEecCCcEEEEecCCcccccccccCeEEEeEEe
Confidence 55554332 22234456799999999997654 333433 2344443321 01123345689999999998
Q ss_pred ccc
Q psy12350 1011 RHT 1013 (1129)
Q Consensus 1011 ~~~ 1013 (1129)
...
T Consensus 162 ~~~ 164 (190)
T d1trba1 162 MDH 164 (190)
T ss_dssp GCS
T ss_pred cCc
Confidence 643
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=98.21 E-value=3e-07 Score=99.68 Aligned_cols=40 Identities=28% Similarity=0.592 Sum_probs=37.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
|||+|||||+|||+||..|++ .|++|+||||++.+||.+.
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~--~G~~V~vlE~~~~~GG~~~ 40 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRS--RGTDAVLLESSARLGGAVG 40 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHT--TTCCEEEECSSSSSBTTCC
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCCceEE
Confidence 589999999999999999999 6699999999999999765
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.20 E-value=3.4e-07 Score=98.21 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=31.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
.+|+||||||+||++|..|++ .|++|+|+||++.
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~--~G~~v~vlE~~~~ 36 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQTP 36 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHH--HTCCEEEECSSCH
T ss_pred CCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCC
Confidence 589999999999999999999 6699999999764
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=4e-07 Score=101.17 Aligned_cols=43 Identities=35% Similarity=0.553 Sum_probs=38.7
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.++.||||||||+|||+||..|++ .|++|+|||+++.+||.+.
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~--~G~~V~VlEa~~r~GGr~~ 45 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARDRVGGRVA 45 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHH--TTCEEEEECSSSSSBTTCC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCCcccEE
Confidence 345789999999999999999999 6699999999999999654
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.19 E-value=2.8e-07 Score=98.27 Aligned_cols=40 Identities=38% Similarity=0.666 Sum_probs=36.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~~~GG~w~ 51 (1129)
.||+|||||+|||+||..|++ .|+ +|+||||++.+||.+.
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~--~G~~~V~vlE~~~~~GG~~~ 41 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSE--AGITDLLILEATDHIGGRMH 41 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHH--TTCCCEEEECSSSSSBTTSC
T ss_pred CCEEEECCcHHHHHHHHHHHh--CCCCcEEEEECCCCCCceEE
Confidence 379999999999999999999 665 7999999999999765
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.18 E-value=3.1e-06 Score=91.53 Aligned_cols=40 Identities=23% Similarity=0.423 Sum_probs=35.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
+..||+|||||+|||+||..|++ .|.+|+|+||.+..||.
T Consensus 18 e~~DVvVIGaG~aGl~AA~~aa~--~G~~V~vlEK~~~~gG~ 57 (317)
T d1qo8a2 18 ETTQVLVVGAGSAGFNASLAAKK--AGANVILVDKAPFSGGN 57 (317)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH--HTCCEEEECSSSSSCTT
T ss_pred CccCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCc
Confidence 45799999999999999999999 56999999998877653
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.18 E-value=3.2e-07 Score=93.87 Aligned_cols=43 Identities=33% Similarity=0.599 Sum_probs=39.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..+||+|||||||||+||.++++ .|.+|+|+|+++.+||.|.+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~aa~--~G~kV~vie~~~~~GG~~~~ 44 (221)
T d1dxla1 2 DENDVVIIGGGPGGYVAAIKAAQ--LGFKTTCIEKRGALGGTCLN 44 (221)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSSSCCSHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCCCCCeeec
Confidence 35899999999999999999999 66999999999999999984
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=1.6e-07 Score=96.21 Aligned_cols=41 Identities=39% Similarity=0.664 Sum_probs=37.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
.+||+||||||||++||.++++ .|.+|+|+|+ ..+||+|.+
T Consensus 3 ~yDviIIG~GpaG~~aA~~aar--~G~kV~vIEk-~~~GG~c~n 43 (221)
T d3grsa1 3 SYDYLVIGGGSGGLASARRAAE--LGARAAVVES-HKLGGTCVN 43 (221)
T ss_dssp ECSEEEECCSHHHHHHHHHHHH--TTCCEEEEES-SCTTHHHHH
T ss_pred ccCEEEECCCHHHHHHHHHHHH--CCCEEEEEec-cCCCCcccc
Confidence 5899999999999999999999 6699999999 668999974
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.11 E-value=2.6e-06 Score=87.28 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=57.4
Q ss_pred EeeccEEEEccCccCcCC--------CCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc-hhHHHHHHHHHHH
Q psy12350 957 YEQVDIILCCTGYSNHYP--------FLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL-LFNLFDLQVRLFQ 1027 (1129)
Q Consensus 957 ~~~~D~VI~aTG~~~~~~--------fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~~a 1027 (1129)
.+.++.+++|||.++... .+.+..|+.+++++...+..+ +.++.|+||++|++...+ ..+.+..+++.+|
T Consensus 140 ~~~~~~~i~atG~~~~~~~~~~~~~~~~~~~~gv~l~~~G~i~vd~~-~~T~vpgiyA~GDv~~g~~l~~~A~~~G~~aa 218 (229)
T d3lada1 140 VLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGFIYVDDY-CATSVPGVYAIGDVVRGAMLAHKASEEGVVVA 218 (229)
T ss_dssp EECCSCEEECCCEEECCCTEEECCTTCCSSCCSCCBCTTSCBCCCTT-SBCSSTTEEECGGGSSSCCCHHHHHHHHHHHH
T ss_pred eeecccccccCCcccccccccccccccchHhcCeeecCCCcEEeccc-ccCCCCCEEEEeCCcchHHHHHHHHHHHHHHH
Confidence 468999999999887642 122346888887765544333 356999999999987654 4578888999999
Q ss_pred HHHcCCC
Q psy12350 1028 QLMQGHI 1034 (1129)
Q Consensus 1028 ~~l~g~~ 1034 (1129)
..+.|+.
T Consensus 219 ~~i~g~~ 225 (229)
T d3lada1 219 ERIAGHK 225 (229)
T ss_dssp HHHHHCC
T ss_pred HHHcCCC
Confidence 9988765
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.11 E-value=5.1e-07 Score=92.89 Aligned_cols=42 Identities=26% Similarity=0.555 Sum_probs=39.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
.+||+|||||||||+||.+|++ .|.+|+||||.+.+||+|.+
T Consensus 6 dyDviIIG~GPaGlsaA~~aa~--~G~~V~viE~~~~~GG~~~~ 47 (229)
T d1ojta1 6 EYDVVVLGGGPGGYSAAFAAAD--EGLKVAIVERYKTLGGVCLN 47 (229)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSCSSHHHHH
T ss_pred ccCEEEECcCHHHHHHHHHHHH--CCCeEEEEeccCCCCCeeec
Confidence 4899999999999999999999 66999999999999999874
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.09 E-value=2.3e-07 Score=89.04 Aligned_cols=79 Identities=8% Similarity=-0.012 Sum_probs=61.1
Q ss_pred CCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCceEEcCCceEEcCCCEeecCEEE
Q psy12350 266 ANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAELTPTGVRFQDGSYEQVDIIL 331 (1129)
Q Consensus 266 GgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~~~~~v~~~dg~~~~~D~VI 331 (1129)
|||++|+|+|..|++.|++||++++.+.+++..++. ++..+..+.+++++++.+.+....+++.++
T Consensus 48 ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~v~l~~~~~~~~~~v~ 127 (156)
T d1djqa2 48 DTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTY 127 (156)
T ss_dssp CCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHHTTCHHHHHHHHHHTTCEEEETEEEEEEETTEEEEEETTCSCSCCCC
T ss_pred CCChHHHHHHHHHHHcCCeEEEEecCCccccccchhHHHHHHHHHhhccceEEeccEEEEecCcceEEEeeeccccceee
Confidence 999999999999999999999999988775543322 567788899999888877766555666666
Q ss_pred EcccccccCCCCC
Q psy12350 332 YCTGYTYRYPFLH 344 (1129)
Q Consensus 332 ~atG~~~~~~~l~ 344 (1129)
.++|..++....+
T Consensus 128 ~~~g~~~~~~~~~ 140 (156)
T d1djqa2 128 RGPGVSPRDANTS 140 (156)
T ss_dssp CCTTSCSSCCCCC
T ss_pred eeeEEEecccCCc
Confidence 6666666655544
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.06 E-value=6.6e-06 Score=84.62 Aligned_cols=164 Identities=19% Similarity=0.211 Sum_probs=96.6
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc--------------hhh--h---hcc------ccE--EEEec-
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI--------------TLD--I---ATR------AST--VFLSH- 922 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~--------------~~~--~---~~~------~~~--~~~~~- 922 (1129)
.|+|||+|+.|+..|..+++.|.+|.+++..+.+... .+. + ... ... .....
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~ 84 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT 84 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence 5999999999999999999999999999865432100 000 0 000 000 00000
Q ss_pred ---CCccc----------cc----cCC-CCCeEEcCCeeEEeC-Cc--EEecCCcE--eeccEEEEccCccCcCCCCC--
Q psy12350 923 ---HSERV----------TS----LCL-PNNVVLKPDVAELTP-TG--VRFQDGSY--EQVDIILCCTGYSNHYPFLH-- 977 (1129)
Q Consensus 923 ---~~~~~----------~~----~~~-~~~V~~~~~i~~v~~-~~--V~~~dG~~--~~~D~VI~aTG~~~~~~fl~-- 977 (1129)
..... +. ..+ ..+|.+..+-..+.. +. +...+|.. +.+|.++++||-+|..+-+.
T Consensus 85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~i~~~ 164 (235)
T d1h6va1 85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGIRDS 164 (235)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCSSEEE
T ss_pred eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeeccccceecccccccccccccccceeecCCCceeEEEeec
Confidence 00000 00 000 114565555333332 22 33345543 68999999999998743211
Q ss_pred -------CCCCeeecCC-cccccccceeecCCCCcEEEcccccc--chhHHHHHHHHHHHHHHcCCCC
Q psy12350 978 -------ESCGIKVVNK-NVQPLYKHTINIEHPTMFILGVPRHT--LLFNLFDLQVRLFQQLMQGHIT 1035 (1129)
Q Consensus 978 -------~~~g~~~~~~-~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~~a~~l~g~~~ 1035 (1129)
+..|+.+++. +...+..+ +.++.|+||++||+... ...+.+..|++.+|+.+.|..+
T Consensus 165 ~~~~~~l~~~gv~l~~~~g~I~vd~~-~~TsvpgIyA~GDv~~g~~~l~~~A~~eG~~aa~~~~g~~~ 231 (235)
T d1h6va1 165 CTRTIGLETVGVKINEKTGKIPVTDE-EQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGST 231 (235)
T ss_dssp SCTTSCCTTTTCCCCSSSCCBCCCTT-SBCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHCCC
T ss_pred cceeeccccceeeeccccCccccCCc-cccCCCCEEEEEeccCCCcccHHHHHHHHHHHHHHHcCCCC
Confidence 2346777653 33333333 35699999999998754 2457899999999998876543
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=98.03 E-value=1.7e-05 Score=86.33 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=32.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..||+|||||+|||+||.+|++ .|.+|+|+||.+..
T Consensus 5 ~~DVvVIG~G~AGl~AAl~aa~--~G~~V~liEK~~~~ 40 (336)
T d2bs2a2 5 YCDSLVIGGGLAGLRAAVATQQ--KGLSTIVLSLIPVK 40 (336)
T ss_dssp ECSEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCGG
T ss_pred ecCEEEECcCHHHHHHHHHHHH--CCCCEEEEecCCCC
Confidence 4699999999999999999999 66999999997654
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.02 E-value=6.1e-06 Score=84.66 Aligned_cols=72 Identities=13% Similarity=0.083 Sum_probs=53.6
Q ss_pred cEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCCcEEEccccccc-hhHHHHHHHHHHHHHHcCC
Q psy12350 961 DIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 961 D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+..+.++|.+|+.+.|. +++|+++++.+...+..+ +.++.|+||++|++.... ..+.+..+++.+|+.+.+.
T Consensus 155 ~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~-~~T~~~~v~A~GD~~~g~~l~~~a~~~G~~aa~~i~~~ 228 (233)
T d1v59a1 155 SEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQ-FNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTG 228 (233)
T ss_dssp EEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCTT-SBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred cccceecccccCCCCcCchhcCeEEcCCCcEEECCe-EecCCCCEEEEcCCcccHHHHHHHHHHHHHHHHHHccC
Confidence 33444899999988664 457888887765444433 457899999999987654 4578999999999988654
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.02 E-value=5e-06 Score=88.16 Aligned_cols=38 Identities=26% Similarity=0.525 Sum_probs=33.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccCCcCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTDNVGG 48 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~~~GG 48 (1129)
++||+|||||||||++|..|++ .|. +|+||||++.++.
T Consensus 1 ~~~V~IvGaG~aGl~~A~~L~~--~Gi~~V~V~Er~~~~~~ 39 (288)
T d3c96a1 1 PIDILIAGAGIGGLSCALALHQ--AGIGKVTLLESSSEIRP 39 (288)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESSSSCCC
T ss_pred CCEEEEECcCHHHHHHHHHHHh--CCCCeEEEEeCCCCCCC
Confidence 3799999999999999999999 665 8999999887653
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=1.1e-06 Score=97.33 Aligned_cols=39 Identities=38% Similarity=0.682 Sum_probs=36.4
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
||+|||||+|||+||..|++ .|++|+||||++.+||.+.
T Consensus 1 DViVIGaG~aGL~aA~~L~~--~G~~V~VlE~~~~~GGr~~ 39 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHD--SGLNVVVLEARDRVGGRTY 39 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHH--TTCCEEEEESSSSSBTTCC
T ss_pred CEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCcceee
Confidence 69999999999999999999 6699999999999999665
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.99 E-value=2.7e-07 Score=95.67 Aligned_cols=46 Identities=15% Similarity=0.068 Sum_probs=39.7
Q ss_pred CccccccCCchhhHHHHHHhhCC-----CcceEEEcccCCcCcccccCCCC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGN-----GFTCTTFEQADNIGGTWLYTEHI 786 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~-----~~~v~v~E~~~~~GG~w~~~~~~ 786 (1129)
.|+|||+||+||+||.+|.+.|. +++|+|||+.+.+||+|.+...|
T Consensus 4 ~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p 54 (239)
T d1lqta2 4 YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAP 54 (239)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCT
T ss_pred EEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCc
Confidence 57899999999999999999872 24799999999999999876444
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=97.98 E-value=2.3e-07 Score=96.31 Aligned_cols=43 Identities=28% Similarity=0.408 Sum_probs=36.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccCC--------cCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTDN--------VGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~~--------~GG~w~~ 52 (1129)
+.+||+||||||||++||.++++ .+. +|+|+|+... +||+|.+
T Consensus 2 k~YDvvVIG~GpAG~~aAi~aa~--~g~k~V~vie~~~~~~~~~~~~iGGtc~~ 53 (240)
T d1feca1 2 RAYDLVVIGAGSGGLEAGWNAAS--LHKKRVAVIDLQKHHGPPHYAALGGTCVN 53 (240)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHH--HHCCCEEEEESCSSSBTTTBSCTTCHHHH
T ss_pred CccCEEEECCCHHHHHHHHHHHH--cCCCEEEEEEEeccCCccccccccccccc
Confidence 46999999999999999999998 444 5899998654 7888864
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=97.98 E-value=1.4e-05 Score=81.69 Aligned_cols=77 Identities=13% Similarity=0.140 Sum_probs=55.3
Q ss_pred eeccEEEEccCcc-CcCC-CCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc-hhHHHHHHHHHHHHHHcCCC
Q psy12350 958 EQVDIILCCTGYS-NHYP-FLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 958 ~~~D~VI~aTG~~-~~~~-fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
..+|.+++++|.+ +... ...+.+|+++++++.+.+.. .+.++.|+||++|++.... ..+.+..|++.+|..+.|..
T Consensus 147 ~~~~~~~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~-~~~TsvpgVyAaGDv~~~~~l~~~A~~eG~~Aa~~i~G~~ 225 (229)
T d1ojta1 147 VAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDK-QMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHK 225 (229)
T ss_dssp EEEEEEEECCCEEEECGGGTTGGGTTCCCCTTSCCCCCT-TSBCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred eecceEEEEecccCCcccccchhhhCccCCCCCCEEcCC-CccCCCCCEEEEEecCCCcchHHHHHHHHHHHHHHHcCCC
Confidence 4566666666655 4322 22345789998877655544 3567999999999997654 45789999999999999875
Q ss_pred C
Q psy12350 1035 T 1035 (1129)
Q Consensus 1035 ~ 1035 (1129)
.
T Consensus 226 ~ 226 (229)
T d1ojta1 226 A 226 (229)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=97.98 E-value=1.1e-05 Score=86.81 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=34.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
..||+|||+|+|||+||..+++.+.+.+|+|+||....|
T Consensus 5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~ 43 (311)
T d1kf6a2 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMR 43 (311)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGG
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCC
Confidence 379999999999999999999977789999999976543
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=97.92 E-value=3e-06 Score=88.85 Aligned_cols=40 Identities=18% Similarity=0.300 Sum_probs=34.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
.++||+|||||++||++|..|++ .|++|+|+||+...+|.
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~--~G~~V~vier~~~~~~~ 44 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILAR--KGYSVHILARDLPEDVS 44 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSCTTCTT
T ss_pred CCCcEEEECccHHHHHHHHHHHH--CCCCEEEEeCCCCCCCc
Confidence 45799999999999999999999 66899999997643443
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=97.89 E-value=2.5e-06 Score=87.35 Aligned_cols=41 Identities=24% Similarity=0.412 Sum_probs=35.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceE
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTW 50 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w 50 (1129)
+++||+|||||||||+||.+|++ .|.+|+|+|+....|+.+
T Consensus 2 ~kYDviIIGgGpAGl~aA~~aar--~G~~V~viE~~~~~~~~~ 42 (229)
T d3lada1 2 QKFDVIVIGAGPGGYVAAIKSAQ--LGLKTALIEKYKGKEGKT 42 (229)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHH--HTCCEEEEECCBCTTSSB
T ss_pred CcCCEEEECcCHHHHHHHHHHHH--CCCeEEEEecccCCCccc
Confidence 46999999999999999999999 669999999976544433
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.88 E-value=2.3e-06 Score=87.36 Aligned_cols=41 Identities=32% Similarity=0.503 Sum_probs=37.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
++||+|||||||||+||.++++ .|.+|+|+|| ..+||+|.+
T Consensus 3 ~~DviVIG~GpaGl~aA~~aar--~G~kV~vIEk-~~~GG~~~~ 43 (223)
T d1ebda1 3 ETETLVVGAGPGGYVAAIRAAQ--LGQKVTIVEK-GNLGGVCLN 43 (223)
T ss_dssp ECSEEEECCSHHHHHHHHHHHH--TTCCEEEEES-SCTTHHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCEEEEEec-CCCCcceec
Confidence 4899999999999999999999 6699999999 558999984
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.84 E-value=4.3e-06 Score=92.43 Aligned_cols=39 Identities=23% Similarity=0.514 Sum_probs=34.3
Q ss_pred cceEEEEcCChHHHHHHHHhhc----CCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTE----PGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~----~~~~~~v~v~E~~~~~G 47 (1129)
.+||+||||||||++||..|++ .+.|++|+|+||.+.+|
T Consensus 32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG 74 (380)
T d2gmha1 32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG 74 (380)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTT
T ss_pred cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCC
Confidence 4799999999999999999986 23579999999998775
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=97.80 E-value=1.8e-05 Score=81.59 Aligned_cols=80 Identities=13% Similarity=0.099 Sum_probs=59.8
Q ss_pred cEeeccEEEEccCccCcCCCCC---------CCCCeeecCCcccccccceeecCCCCcEEEccccccc-hhHHHHHHHHH
Q psy12350 956 SYEQVDIILCCTGYSNHYPFLH---------ESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL-LFNLFDLQVRL 1025 (1129)
Q Consensus 956 ~~~~~D~VI~aTG~~~~~~fl~---------~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~ 1025 (1129)
+.+++|.|+++||.+|...-+. +..|+++++++...+..++ .++.||||++|++.... ..+.+..|++.
T Consensus 148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~-~Ts~~~iyA~GDv~~~~~~~~~A~~eg~~ 226 (240)
T d1feca1 148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYS-KTNVDNIYAIGDVTDRVMLTPVAINEGAA 226 (240)
T ss_dssp EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTC-BCSSTTEEECGGGGCSCCCHHHHHHHHHH
T ss_pred EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCccc-CcCCCCEEEEEECCCCccchhhHHHHHHH
Confidence 3578999999999998743211 2357778776655555543 56999999999987654 46899999999
Q ss_pred HHHHHcCCCCC
Q psy12350 1026 FQQLMQGHITL 1036 (1129)
Q Consensus 1026 ~a~~l~g~~~l 1036 (1129)
+|+.+.|..+.
T Consensus 227 aa~~~~~~~~~ 237 (240)
T d1feca1 227 FVDTVFANKPR 237 (240)
T ss_dssp HHHHHHSSCCC
T ss_pred HHHHHhCCCCC
Confidence 99998886544
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=97.80 E-value=2.5e-05 Score=83.73 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=29.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~ 44 (1129)
.||+|||||.+|+++|.+|++ .|. +|+|+||+.
T Consensus 2 ~dViIIGaGi~G~s~A~~La~--~G~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVT--RGWNNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHH--cCCCcEEEEeCCC
Confidence 489999999999999999999 454 799999974
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.79 E-value=3.9e-06 Score=90.50 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=39.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
.+||+|||||||||+||.+|+++.+|++|+|||+++.+||.+.+
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL 93 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence 47899999999999999999976578999999999999998763
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=97.71 E-value=8e-05 Score=80.54 Aligned_cols=39 Identities=26% Similarity=0.464 Sum_probs=34.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG 48 (1129)
+..||+|||||+|||+||.++++ .|.+|+|+||.+..||
T Consensus 6 ~~~DVlVVG~G~AGl~AAl~aa~--~G~~V~lleK~~~~gg 44 (330)
T d1neka2 6 REFDAVVIGAGGAGMRAALQISQ--SGQTCALLSKVFPTRS 44 (330)
T ss_dssp EEESCEEECCSHHHHHHHHHHHH--TTCCCEEECSSCGGGS
T ss_pred ccCCEEEECcCHHHHHHHHHHHH--cCCeEEEEeCCCCCCC
Confidence 35899999999999999999999 5689999999776543
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.69 E-value=4.4e-05 Score=71.70 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=31.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcC-CEEEEEecCC
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTG-KQAVVVGSGQ 902 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~-~~V~vv~~~~ 902 (1129)
...+|+|+|||||+||+|+|..+.+.| ++|+++.|.+
T Consensus 42 p~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 42 PSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred ccCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 345789999999999999999999985 5688887754
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.62 E-value=1.2e-05 Score=79.86 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=33.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhcCC-EEEEEecCCCCc
Q psy12350 868 AGKQAVVVGSGQSGLDITLDIATTGK-QAVVVGSGQSGL 905 (1129)
Q Consensus 868 ~gk~VvVVG~G~Sg~eiA~~la~~~~-~V~vv~~~~~~~ 905 (1129)
.+|||+|||||++|+++|..|++.|. .|+++++.+...
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~g 41 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVG 41 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCccc
Confidence 37999999999999999999999997 599999876543
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.59 E-value=1.4e-05 Score=82.13 Aligned_cols=43 Identities=28% Similarity=0.397 Sum_probs=34.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc--------CCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT--------DNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~--------~~~GG~w~ 51 (1129)
+.+||+||||||||++||.++++.+ ..+|+|+|+. +.+||+|.
T Consensus 2 ~~YDviIIG~GpaGl~aA~~aa~~g-~k~V~iie~~~~~~~~~~~~lGG~c~ 52 (238)
T d1aoga1 2 KIFDLVVIGAGSGGLEAAWNAATLY-KKRVAVIDVQMVHGPPFFSALGGTCV 52 (238)
T ss_dssp CSBSEEEECCSHHHHHHHHHHHHTS-CCCEEEEESCSSSBTTTBCCTTHHHH
T ss_pred CccCEEEECCCHHHHHHHHHHHHcC-CCEEEEEEeecccCcccccccccccc
Confidence 4599999999999999999999943 2368899984 35788776
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=0.00017 Score=70.45 Aligned_cols=140 Identities=16% Similarity=0.167 Sum_probs=74.1
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccch-hhhhccccEEEEe-cCCcccccc-CCCCCeEEcCC--eeEE
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDIT-LDIATRASTVFLS-HHSERVTSL-CLPNNVVLKPD--VAEL 945 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~-~~~~~V~~~~~--i~~v 945 (1129)
.|+|||||++|++.|..+++.|.+|+++++...+.... ............. ......+.. ...-.++.... ..++
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL 82 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence 49999999999999999999999999998743221100 0000000000000 000000000 00001222211 3333
Q ss_pred eCC-------cEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccc
Q psy12350 946 TPT-------GVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH 1012 (1129)
Q Consensus 946 ~~~-------~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~ 1012 (1129)
... .....+++++.++.+++++|.......+.. .++.....+.. .......++.|++|++|++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~g~i-~v~~~~~t~~~gv~a~gd~~~ 154 (184)
T d1fl2a1 83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLE-GAVERNRMGEI-IIDAKCETNVKGVFAAGDCTT 154 (184)
T ss_dssp ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGT-TTSCBCTTSCB-CCCTTCBCSSTTEEECSTTBS
T ss_pred cccccccceeeeeeecceeeeccccccccccccccccccc-cccccccccee-ccCCceeeeCCCEEEEeeecC
Confidence 221 134566778899999999998766443332 22333332222 223334568999999999765
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.51 E-value=0.00012 Score=73.30 Aligned_cols=59 Identities=24% Similarity=0.396 Sum_probs=41.6
Q ss_pred CCCCCCCCCCCCcEEeeccCC-----------CCCCCCCCeEEEEcCCccHHHHHHHHH--------------------h
Q psy12350 842 YPEFKGKDMCQIPILHSRDYR-----------TPEPFAGKQAVVVGSGQSGLDITLDIA--------------------T 890 (1129)
Q Consensus 842 ~P~i~G~~~f~g~~~hs~~~~-----------~~~~~~gk~VvVVG~G~Sg~eiA~~la--------------------~ 890 (1129)
..+|||-+ .+| ++.+.+|. ...++.||+|+|||+|++|+|+|..++ +
T Consensus 3 ~L~IPGed-l~g-V~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r 80 (216)
T d1lqta1 3 MLNIPGED-LPG-SIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRP 80 (216)
T ss_dssp CCCCTTTT-STT-EEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTT
T ss_pred CCCCCCCC-CCC-cEeHHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhh
Confidence 45788854 333 55555442 123467999999999999999998886 2
Q ss_pred c-CCEEEEEecCC
Q psy12350 891 T-GKQAVVVGSGQ 902 (1129)
Q Consensus 891 ~-~~~V~vv~~~~ 902 (1129)
. .++|+++.|..
T Consensus 81 ~~~~~V~iv~RRg 93 (216)
T d1lqta1 81 RGIQEVVIVGRRG 93 (216)
T ss_dssp CCCCEEEEECSSC
T ss_pred cCCceEEEEEECC
Confidence 3 56899997643
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=97.47 E-value=0.00024 Score=73.37 Aligned_cols=33 Identities=27% Similarity=0.586 Sum_probs=30.6
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEecCCC
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQS 903 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~ 903 (1129)
.|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~ 38 (253)
T d2gqfa1 6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK 38 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 599999999999999999999999999988653
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=97.29 E-value=8.9e-06 Score=84.96 Aligned_cols=40 Identities=28% Similarity=0.434 Sum_probs=36.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
.+++|||+|++|+.+|.++.+.| .+|+|+|+. .+||+|.+
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~G--~~V~liE~~-~~GGtc~n 41 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARHN--AKVALVEKS-RLGGTCVN 41 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-STTHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--CeEEEEecC-CCCCeEEe
Confidence 47899999999999999999999 999999985 69999974
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.28 E-value=3.9e-05 Score=81.67 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=38.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT 783 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~ 783 (1129)
-+++|||||++|+++|..|.+.| .+|+|||+++++||.+...
T Consensus 2 ~dv~IIGaG~sGl~~A~~L~~~g--~~V~iiEk~~~iGG~~~t~ 43 (298)
T d1i8ta1 2 YDYIIVGSGLFGAVCANELKKLN--KKVLVIEKRNHIGGNAYTE 43 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGT--CCEEEECSSSSSSGGGCEE
T ss_pred ccEEEECCcHHHHHHHHHHHhCC--CcEEEEECCCCcccceEEe
Confidence 46799999999999999999999 9999999999999988644
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=97.23 E-value=9.8e-05 Score=81.42 Aligned_cols=36 Identities=19% Similarity=0.419 Sum_probs=32.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
.++||||||||+||+++|+.|++ .|++|+|+|+...
T Consensus 3 ~~yDviIVGsG~aG~v~A~~La~--~G~kVlvLEaG~~ 38 (379)
T d2f5va1 3 IKYDVVIVGSGPIGCTYARELVG--AGYKVAMFDIGEI 38 (379)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCC
T ss_pred CcccEEEECcCHHHHHHHHHHhh--CCCeEEEEecCCC
Confidence 45899999999999999999999 6799999999543
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.21 E-value=0.00049 Score=69.22 Aligned_cols=59 Identities=20% Similarity=0.349 Sum_probs=42.1
Q ss_pred CCCCCCCCCCCCcEEeeccCC-----------CCCCCCCCeEEEEcCCccHHHHHHHHHh--------------------
Q psy12350 842 YPEFKGKDMCQIPILHSRDYR-----------TPEPFAGKQAVVVGSGQSGLDITLDIAT-------------------- 890 (1129)
Q Consensus 842 ~P~i~G~~~f~g~~~hs~~~~-----------~~~~~~gk~VvVVG~G~Sg~eiA~~la~-------------------- 890 (1129)
..+|||-+ .+ .++.+.+|. ...++.||+|+|||+|++|+|+|..+.+
T Consensus 3 ~L~IPGed-l~-gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~ 80 (225)
T d1cjca1 3 ALDIPGEE-LP-GVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQ 80 (225)
T ss_dssp CCCCTTTT-ST-TEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHT
T ss_pred CCCCCCCC-CC-CcEeHHHHHHHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhc
Confidence 35678854 33 244444432 1234679999999999999999999987
Q ss_pred -cCCEEEEEecCC
Q psy12350 891 -TGKQAVVVGSGQ 902 (1129)
Q Consensus 891 -~~~~V~vv~~~~ 902 (1129)
..++|+++.|..
T Consensus 81 ~g~~~V~iv~RRg 93 (225)
T d1cjca1 81 SRVKTVWIVGRRG 93 (225)
T ss_dssp CCCCEEEEECSSC
T ss_pred cCCCeEEEEEEcC
Confidence 357899997654
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.20 E-value=4.4e-05 Score=77.87 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=37.9
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
.|+|||+|++||+||.+|++.+..++|+|||+.+.+||.|.+
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~ 44 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF 44 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH
T ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehh
Confidence 578999999999999999988655899999999999998874
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.19 E-value=6.1e-05 Score=78.21 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=38.2
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
..+++|||+|.+|+++|..|.+.| ++|+|+|+++.+||.+.
T Consensus 5 ~yDviViGaG~~Gl~~A~~La~~G--~~V~vlE~~~~~GG~~~ 45 (297)
T d2bcgg1 5 DYDVIVLGTGITECILSGLLSVDG--KKVLHIDKQDHYGGEAA 45 (297)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CCEEEEcCCCCCCcceE
Confidence 457899999999999999999999 99999999999999764
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.18 E-value=4.8e-05 Score=80.11 Aligned_cols=40 Identities=40% Similarity=0.547 Sum_probs=36.8
Q ss_pred CccccccCCchhhHHHHHHhhCCCc-ceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGF-TCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~-~v~v~E~~~~~GG~w~~ 782 (1129)
+|+|||+|++||+||..|.+.| . +|+||||++.+||.+..
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G--~~~V~vlE~~~~~GG~~~t 42 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAG--ITDLLILEATDHIGGRMHK 42 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTT--CCCEEEECSSSSSBTTSCE
T ss_pred CEEEECCcHHHHHHHHHHHhCC--CCcEEEEECCCCCCceEEE
Confidence 5899999999999999999999 7 69999999999997763
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=0.00012 Score=78.06 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=33.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
...||+|||||+|||+||.++++ .+ +|+|+||.+..||.-.
T Consensus 6 ~~~DVvVVG~G~AGl~AA~~a~~--~g-~V~llEK~~~~gG~s~ 46 (305)
T d1chua2 6 HSCDVLIIGSGAAGLSLALRLAD--QH-QVIVLSKGPVTEGSTF 46 (305)
T ss_dssp EECSEEEECCSHHHHHHHHHHTT--TS-CEEEECSSCTTC----
T ss_pred ccCCEEEECccHHHHHHHHHhhc--CC-CEEEEECCCCCCCchH
Confidence 35899999999999999999987 45 8999999887776543
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=97.14 E-value=0.00012 Score=79.89 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=32.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcC---CCCceEEEEcccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEP---GSGFTCTTFEQTDNV 46 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~---~~~~~v~v~E~~~~~ 46 (1129)
..+||+||||||+||++|..|++. ..|++|+||||++.+
T Consensus 6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~ 47 (360)
T d1pn0a1 6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 47 (360)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence 358999999999999999999631 167999999997643
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=97.08 E-value=0.00019 Score=71.40 Aligned_cols=99 Identities=15% Similarity=0.180 Sum_probs=58.1
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc---hhhhhcccc----EEEEecC---------CccccccCCCC
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI---TLDIATRAS----TVFLSHH---------SERVTSLCLPN 934 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~---~~~~~~~~~----~~~~~~~---------~~~~~~~~~~~ 934 (1129)
.|+|||||.+|+|.|..+++.|.++-++........+ .+......+ +...+.. ....+. ...
T Consensus 4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~--~~~ 81 (230)
T d2cula1 4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLE--GLR 81 (230)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHH--TCT
T ss_pred cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHh--hhc
Confidence 4999999999999999999999999999754211100 000000000 0000000 000000 122
Q ss_pred CeEEcCC-eeEE--eCC---cEEecCCcEeeccEEEEccCccC
Q psy12350 935 NVVLKPD-VAEL--TPT---GVRFQDGSYEQVDIILCCTGYSN 971 (1129)
Q Consensus 935 ~V~~~~~-i~~v--~~~---~V~~~dG~~~~~D~VI~aTG~~~ 971 (1129)
++.+... |..+ +++ +|++.+|.++.+..||+|||--.
T Consensus 82 nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL 124 (230)
T d2cula1 82 PLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL 124 (230)
T ss_dssp TEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred CHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCcce
Confidence 5666544 5554 222 37889999999999999999543
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=97.06 E-value=0.0011 Score=68.62 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=31.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
.+||+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~ 37 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP 37 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 5799999999999999999999999999999854
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=97.05 E-value=7.1e-05 Score=80.48 Aligned_cols=40 Identities=30% Similarity=0.377 Sum_probs=36.9
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
.|+|||+|++||+||+.|++.| ++|+|||+++.+||.+..
T Consensus 3 kV~IIGaG~aGL~aA~~La~~G--~~V~vlE~~~~~GG~~~t 42 (373)
T d1seza1 3 RVAVIGAGVSGLAAAYKLKIHG--LNVTVFEAEGKAGGKLRS 42 (373)
T ss_dssp EEEEECCSHHHHHHHHHHHTTS--CEEEEECSSSSSCSSCCE
T ss_pred EEEEECcCHHHHHHHHHHHhCC--CCEEEEeCCCCCcCceEE
Confidence 4789999999999999999999 999999999999996653
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.05 E-value=9e-05 Score=79.27 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=36.6
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
.++|||||++||++|..|.+.| ++|+|||+++++||.+.
T Consensus 4 KI~IIGaG~sGL~aA~~L~k~G--~~V~viEk~~~iGG~~~ 42 (314)
T d2bi7a1 4 KILIVGAGFSGAVIGRQLAEKG--HQVHIIDQRDHIGGNSY 42 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSSGGGC
T ss_pred EEEEECCcHHHHHHHHHHHhCC--CCEEEEECCCCCcCeee
Confidence 4689999999999999999999 99999999999999774
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.0001 Score=80.65 Aligned_cols=39 Identities=28% Similarity=0.477 Sum_probs=36.6
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
+|+|||+|++||++|..|++.| ++|+|||+++.+||.+.
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G--~~V~VlE~~~~~GGr~~ 39 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSG--LNVVVLEARDRVGGRTY 39 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTT--CCEEEEESSSSSBTTCC
T ss_pred CEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCCCcceee
Confidence 5799999999999999999999 99999999999999654
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.99 E-value=0.00021 Score=78.10 Aligned_cols=40 Identities=25% Similarity=0.221 Sum_probs=33.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcC--CCCceEEEEcccCCcCce
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEP--GSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~--~~~~~v~v~E~~~~~GG~ 49 (1129)
.||+|||||+|||+||.+|++. ..|.+|+|+||....||.
T Consensus 22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~ 63 (356)
T d1jnra2 22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSG 63 (356)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCS
T ss_pred cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCCh
Confidence 6999999999999999998652 257999999998766543
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=96.98 E-value=0.0001 Score=78.74 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=36.3
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
+|+|||+|++||++|..|.+.| ++|+|||+++.+||...
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G--~~V~vlE~~~~~GG~~~ 40 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRG--TDAVLLESSARLGGAVG 40 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTT--CCEEEECSSSSSBTTCC
T ss_pred eEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCCCCceEE
Confidence 5799999999999999999999 99999999999999654
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=96.96 E-value=0.001 Score=67.48 Aligned_cols=77 Identities=16% Similarity=0.211 Sum_probs=54.2
Q ss_pred EeeccEEEEccCccCcCC--------CCC-CCCCeeecCCcccccccceeecCCCCcEEEccccccc-hhHHHHHHHHHH
Q psy12350 957 YEQVDIILCCTGYSNHYP--------FLH-ESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL-LFNLFDLQVRLF 1026 (1129)
Q Consensus 957 ~~~~D~VI~aTG~~~~~~--------fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~~ 1026 (1129)
.+++|.|++++|.++..+ .|. ...++.+++.++ .... .+.++.|++|++|++.... ..+.+..|++.+
T Consensus 149 ~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~gv~~~~G~I-~vde-~~~T~~~~iyAvGDv~~~~~l~~~A~~eg~~a 226 (238)
T d1aoga1 149 RLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGVMIKNGGV-QVDE-YSRTNVSNIYAIGDVTNRVMLTPVAINEAAAL 226 (238)
T ss_dssp EEEBSCEEECCCEEECCCCCEEECCGGGCGGGTTCCEETTEE-CCCT-TCBCSSTTEEECGGGGTSCCCHHHHHHHHHHH
T ss_pred cccccceeeecccccccccccccceeeecccccEEEEcCCeE-EecC-CeeeccCCEEEEEEecCCccchhhHHHHHHHH
Confidence 468888889888777643 221 235677665444 2322 3355899999999997654 568899999999
Q ss_pred HHHHcCCCC
Q psy12350 1027 QQLMQGHIT 1035 (1129)
Q Consensus 1027 a~~l~g~~~ 1035 (1129)
|+.+.|..+
T Consensus 227 a~~i~g~~~ 235 (238)
T d1aoga1 227 VDTVFGTTP 235 (238)
T ss_dssp HHHHHSSSC
T ss_pred HHHHcCCCC
Confidence 999988653
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=96.95 E-value=0.00012 Score=76.95 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=37.9
Q ss_pred ccCccccccCCchhhHHHHHHh-hCCCcceEEEcccCCcCccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTE-AGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~-~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
-.+++|||+|++||++|.+|.+ .| ++|+|+|+++.+||.|.+
T Consensus 33 e~DViVIGaGpaGL~aA~~LA~~~G--~~V~vlE~~~~~GG~~~~ 75 (278)
T d1rp0a1 33 ETDVVVVGAGSAGLSAAYEISKNPN--VQVAIIEQSVSPGGGAWL 75 (278)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTT--SCEEEEESSSSCCTTTTC
T ss_pred CCCEEEECCCHHHHHHHHHHHHccC--CeEEEEecCCCCCCceee
Confidence 4578999999999999999976 58 999999999999998874
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.00016 Score=79.10 Aligned_cols=41 Identities=29% Similarity=0.443 Sum_probs=37.0
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
...|+|||+|.+||+||..|.+.| ++|+|||+++.+||...
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~~~G--~~V~VlEa~~r~GGr~~ 45 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARDRVGGRVA 45 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSSSSBTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCCCcccEE
Confidence 345899999999999999999999 99999999999999443
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=96.76 E-value=0.00018 Score=77.98 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=36.7
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
-.|+|||+|++||++|..|.+.| ++|+|||+++.+||...
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~G--~~V~vlE~~~~~GG~~~ 70 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGAG--HQVTVLEASERPGGRVR 70 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHT--CEEEEECSSSSSBTTCC
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCeeE
Confidence 36899999999999999999999 99999999999999543
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.66 E-value=0.0006 Score=63.71 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=34.2
Q ss_pred CCCCCCCCCCeEEEEccCcchhhhHHHhhcc-cCeEEEEEEec
Q psy12350 523 YRTPEPFAGKRAVVVGSGPSGLDITHDISTE-ATTVSAYLRFD 564 (1129)
Q Consensus 523 ~~~~~~~~~k~v~ViG~g~sa~~~~~~l~~~-~~~v~~~~r~~ 564 (1129)
.+......+|+|+|||||+||+|+|..+.+. +++|+++.|++
T Consensus 37 ~~~~~p~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 37 CHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred ccCccccCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 3444555678999999999999999998887 56799988864
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=96.56 E-value=0.0014 Score=71.67 Aligned_cols=34 Identities=35% Similarity=0.476 Sum_probs=31.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT 43 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~ 43 (1129)
...+|+|||+|++|+.+|.+|++ .|++|+|+|+.
T Consensus 6 ~~~dvIVVGsG~aG~v~A~rLae--aG~~VlvLEaG 39 (370)
T d3coxa1 6 DRVPALVIGSGYGGAVAALRLTQ--AGIPTQIVEMG 39 (370)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 45899999999999999999999 67999999994
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=96.49 E-value=0.00075 Score=73.79 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=30.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
-+|+|||+|++|+.+|.+|++ .|++|+|+|+..
T Consensus 3 v~VIVVGsG~aG~v~A~rLae--aG~~VlvLEaG~ 35 (367)
T d1n4wa1 3 VPAVVIGTGYGAAVSALRLGE--AGVQTLMLEMGQ 35 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred CeEEEeCcCHHHHHHHHHHHH--CcCeEEEEecCC
Confidence 489999999999999999999 679999999943
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=96.45 E-value=0.00048 Score=70.79 Aligned_cols=41 Identities=24% Similarity=0.341 Sum_probs=37.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
..+++|||+|++|+.+|..|.+.| ++|+|+||++.+|+.+.
T Consensus 2 ~yDViIIGaG~aGl~aA~~la~~G--~~V~liEk~~~~g~~~~ 42 (251)
T d2i0za1 2 HYDVIVIGGGPSGLMAAIGAAEEG--ANVLLLDKGNKLGRKLA 42 (251)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCccee
Confidence 358899999999999999999999 99999999999987654
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.38 E-value=0.00024 Score=72.81 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=27.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT 43 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~ 43 (1129)
|||+|||||.+||++|.+|++ .|++|+++|+.
T Consensus 1 mkV~VIGaGi~GlstA~~L~~--~G~~v~v~e~~ 32 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHE--RYHSVLQPLDV 32 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--HHTTTSSSCEE
T ss_pred CEEEEECchHHHHHHHHHHHH--CCCCceEEeee
Confidence 589999999999999999999 55676666663
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=96.21 E-value=0.0014 Score=71.36 Aligned_cols=34 Identities=29% Similarity=0.552 Sum_probs=31.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|++|||||+||..+|.+|++ .+.+|+|+|+..
T Consensus 2 ~YD~IIVGsG~aG~v~A~rLae--~g~~VlvLEaG~ 35 (360)
T d1kdga1 2 PYDYIIVGAGPGGIIAADRLSE--AGKKVLLLERGG 35 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHhh--CCCeEEEEEccC
Confidence 5899999999999999999999 568999999963
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.0017 Score=54.80 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=30.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||.|-+|+++|+.|.+ .|.+|+++|.+.
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~--~g~~v~~~D~~~ 38 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLA--RGVTPRVMDTRM 38 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHH--TTCCCEEEESSS
T ss_pred CCEEEEEeECHHHHHHHHHHHH--CCCEEEEeeCCc
Confidence 4789999999999999999999 669999999855
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.87 E-value=0.0015 Score=69.42 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=37.9
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
..+++|||+|++|+++|..|.+..+.++|+|||+++.+||.+..
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL 93 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence 35789999999999999999976333999999999999997764
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=95.81 E-value=0.002 Score=69.72 Aligned_cols=34 Identities=21% Similarity=0.461 Sum_probs=30.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..+|++|||||+||+.+|.+|++ . ++|+|+|+.+
T Consensus 25 ~~YD~IIVGsG~aG~vlA~rLae--~-~kVLvLEaG~ 58 (351)
T d1ju2a1 25 GSYDYVIVGGGTSGCPLAATLSE--K-YKVLVLERGS 58 (351)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTT--T-SCEEEECSSB
T ss_pred CCccEEEECccHHHHHHHHHhcC--C-CCEEEEecCC
Confidence 34899999999999999999997 3 8999999965
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=95.75 E-value=0.003 Score=69.37 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=32.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
+++|++|||||+||..+|.+|.+. .+++|+|+|+...
T Consensus 23 ~tyD~IIVGsG~aG~vlA~rLae~-~~~~VLlLEaG~~ 59 (391)
T d1gpea1 23 KTYDYIIAGGGLTGLTVAAKLTEN-PKIKVLVIEKGFY 59 (391)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTS-TTCCEEEEESSCC
T ss_pred CeeeEEEECcCHHHHHHHHHHHHC-CCCeEEEEcCCCC
Confidence 369999999999999999999984 3479999999753
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.66 E-value=0.0018 Score=70.64 Aligned_cols=39 Identities=28% Similarity=0.497 Sum_probs=34.5
Q ss_pred eccCccccccCCchhhHHHHHHh------hCCCcceEEEcccCCcCc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTE------AGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~------~g~~~~v~v~E~~~~~GG 778 (1129)
+-.+|+|||+||+|++||+.|++ .| ++|+|+||...+|.
T Consensus 31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~G--l~VlllEK~~~pG~ 75 (380)
T d2gmha1 31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKD--LRVCLVEKAAHIGA 75 (380)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHHHTTCC--CCEEEECSSSSTTT
T ss_pred ccCCEEEECCCHHHHHHHHHHHhhhhhhcCC--CEEEEEcCCCCCCC
Confidence 34689999999999999999987 56 99999999988764
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=95.63 E-value=0.0042 Score=52.29 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
+++||+|+|+|.|.||.-+|..|++.|.+|++.+..
T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~ 37 (93)
T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTR 37 (93)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESS
T ss_pred CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCC
Confidence 688999999999999999999999999999998763
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=95.57 E-value=0.0036 Score=68.54 Aligned_cols=36 Identities=33% Similarity=0.486 Sum_probs=31.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+.+|++|||||+||+.+|.+|.+. .+++|+|+|+..
T Consensus 16 ~tyD~IIVGsG~aG~vlA~rLse~-~~~~VLvLEaG~ 51 (385)
T d1cf3a1 16 RTVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESGS 51 (385)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTS-TTCCEEEEESSC
T ss_pred CeEEEEEECcCHHHHHHHHHHHHC-CCCeEEEECCCC
Confidence 358999999999999999999884 358999999964
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=95.54 E-value=0.0023 Score=65.74 Aligned_cols=40 Identities=15% Similarity=0.093 Sum_probs=34.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
..|+|||+|++|+++|..|.++| ++|+|+||+...+|.+.
T Consensus 7 ~kVvVIGaGiaGl~~A~~L~~~G--~~V~vier~~~~~~~s~ 46 (268)
T d1c0pa1 7 KRVVVLGSGVIGLSSALILARKG--YSVHILARDLPEDVSSQ 46 (268)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSCTTCTTCT
T ss_pred CcEEEECccHHHHHHHHHHHHCC--CCEEEEeCCCCCCCcch
Confidence 35899999999999999999999 99999999764445444
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=95.51 E-value=0.0046 Score=59.65 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=30.6
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+|||||..|++.|..|++ .|++|++++|++
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~--~G~~V~~~~r~~ 34 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLAL--KGQSVLAWDIDA 34 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred CEEEEECccHHHHHHHHHHHH--CCCEEEEEECCH
Confidence 799999999999999999999 669999999954
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.40 E-value=0.0025 Score=66.32 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=33.0
Q ss_pred CccccccCCchhhHHHHHHhhCCCc-ceEEEcccCCcCccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGF-TCTTFEQADNIGGTW 780 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~-~v~v~E~~~~~GG~w 780 (1129)
+|+|||+|++||++|..|.+.| . +|+||||++.++..+
T Consensus 3 ~V~IvGaG~aGl~~A~~L~~~G--i~~V~V~Er~~~~~~~g 41 (288)
T d3c96a1 3 DILIAGAGIGGLSCALALHQAG--IGKVTLLESSSEIRPLG 41 (288)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--CSEEEEEESSSSCCCCS
T ss_pred EEEEECcCHHHHHHHHHHHhCC--CCeEEEEeCCCCCCCCc
Confidence 5789999999999999999999 6 899999988765433
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=95.35 E-value=0.0029 Score=66.97 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=35.7
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGT 779 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~ 779 (1129)
..+++|||+|++|+++|..|.+.| .+|+|+||.+..||.
T Consensus 16 ~~DVlVIG~G~aGl~aA~~la~~G--~~V~lvEK~~~~gG~ 54 (308)
T d1y0pa2 16 TVDVVVVGSGGAGFSAAISATDSG--AKVILIEKEPVIGGN 54 (308)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTT
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCCc
Confidence 358999999999999999999999 999999999888773
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.24 E-value=0.0063 Score=58.36 Aligned_cols=34 Identities=26% Similarity=0.219 Sum_probs=31.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||||-.|..+|++|.+ .|++|+|+||+.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~--~g~~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTD--SGIKVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHT--TTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEECCh
Confidence 4799999999999999999999 569999999854
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.19 E-value=0.0079 Score=55.64 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=31.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++-+|+|||||.+|+.|++.++. .|.+|++||.+.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~--lGA~V~~~D~~~ 65 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVG--LGAQVQIFDINV 65 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred CCcEEEEECCChHHHHHHHHHhh--CCCEEEEEeCcH
Confidence 45799999999999999999999 679999999854
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.14 E-value=0.0061 Score=60.88 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=34.1
Q ss_pred CCCCCCeEEEEccCcchhhhHHHhhc---------------------ccCeEEEEEEecce
Q psy12350 527 EPFAGKRAVVVGSGPSGLDITHDIST---------------------EATTVSAYLRFDNK 566 (1129)
Q Consensus 527 ~~~~~k~v~ViG~g~sa~~~~~~l~~---------------------~~~~v~~~~r~~~~ 566 (1129)
.++.||+|+|||+|+.|+|+|..+.+ .+++|+++.|+...
T Consensus 35 ~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~ 95 (225)
T d1cjca1 35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL 95 (225)
T ss_dssp CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred ccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChH
Confidence 35779999999999999999998887 35799999997543
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.09 E-value=0.0093 Score=55.98 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=31.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++-+|+|||||.+|+.||+.++. .|..|++||.+.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~--lGA~V~v~D~~~ 62 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKR--LGAVVMATDVRA 62 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCS
T ss_pred CCcEEEEEcCcHHHHHHHHHHHH--cCCEEEEEeccH
Confidence 35699999999999999999999 679999999865
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=95.08 E-value=0.0037 Score=66.57 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=35.9
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGT 779 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~ 779 (1129)
.-+|+|||+|++|+++|..|.+.| .+|+|+||.+..||.
T Consensus 23 t~DVvVIG~G~aGl~aA~~la~~G--~~V~llEk~~~~gG~ 61 (322)
T d1d4ca2 23 TTDVVIIGSGGAGLAAAVSARDAG--AKVILLEKEPIPGGN 61 (322)
T ss_dssp ECSEEEECSSHHHHHHHHHHHTTT--CCEEEECSSSSSCTT
T ss_pred cceEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCCc
Confidence 458999999999999999999999 999999999888874
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.07 E-value=0.0073 Score=56.00 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEec
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGS 900 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~ 900 (1129)
+++||+|+|||||..|.+-|..|.+.|++||++..
T Consensus 10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 47899999999999999999999999999999953
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=94.89 E-value=0.0043 Score=64.29 Aligned_cols=37 Identities=19% Similarity=0.109 Sum_probs=32.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
.+++|||+|.+|+++|++|.+.| .+|+|+||++--+|
T Consensus 5 ~DvvIIGaGi~Gls~A~~La~~G--~~V~vlE~~~~~~g 41 (276)
T d1ryia1 5 YEAVVIGGGIIGSAIAYYLAKEN--KNTALFESGTMGGR 41 (276)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSTTTT
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCC
Confidence 47899999999999999999999 99999999764333
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.75 E-value=0.0085 Score=59.34 Aligned_cols=61 Identities=21% Similarity=0.307 Sum_probs=42.5
Q ss_pred CCCCCCCCCcCCcEEecCCC-----------CCCCCCCCCeEEEEccCcchhhhHHHhh--------------------c
Q psy12350 504 YPDFKGKDVCQIPIMHSHEY-----------RTPEPFAGKRAVVVGSGPSGLDITHDIS--------------------T 552 (1129)
Q Consensus 504 ~p~~~g~~~f~g~v~hs~~~-----------~~~~~~~~k~v~ViG~g~sa~~~~~~l~--------------------~ 552 (1129)
...|||.+ ..| ++++.+| ....++.||+|+|||+|++|+|+|.-++ +
T Consensus 3 ~L~IPGed-l~g-V~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r 80 (216)
T d1lqta1 3 MLNIPGED-LPG-SIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRP 80 (216)
T ss_dssp CCCCTTTT-STT-EEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTT
T ss_pred CCCCCCCC-CCC-cEeHHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhh
Confidence 34678864 455 3333333 1134577999999999999999998775 2
Q ss_pred -ccCeEEEEEEecce
Q psy12350 553 -EATTVSAYLRFDNK 566 (1129)
Q Consensus 553 -~~~~v~~~~r~~~~ 566 (1129)
.+++|+++.|+...
T Consensus 81 ~~~~~V~iv~RRg~~ 95 (216)
T d1lqta1 81 RGIQEVVIVGRRGPL 95 (216)
T ss_dssp CCCCEEEEECSSCGG
T ss_pred cCCceEEEEEECChH
Confidence 36789999987543
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=94.70 E-value=0.0052 Score=65.25 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=35.4
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGT 779 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~ 779 (1129)
.-+|+|||+|++|+++|.++.+.| .+|+|+||.+..||.
T Consensus 19 ~~DVvVIGaG~aGl~AA~~aa~~G--~~V~vlEK~~~~gG~ 57 (317)
T d1qo8a2 19 TTQVLVVGAGSAGFNASLAAKKAG--ANVILVDKAPFSGGN 57 (317)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSSCTT
T ss_pred ccCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCCc
Confidence 457899999999999999999999 999999999877763
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.68 E-value=0.0056 Score=64.01 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=31.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADN 775 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~ 775 (1129)
-+|+|||+|++||++|..|.+.| ++|+|+||++.
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G--~~v~vlE~~~~ 36 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQTP 36 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHT--CCEEEECSSCH
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCC
Confidence 37899999999999999999999 99999999764
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=94.62 E-value=0.0057 Score=63.56 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=32.5
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
..+++|||+|.+|+++|++|.++| .+|+|+||++..
T Consensus 3 ~yDvvIIGaGi~Gls~A~~La~~G--~~V~viE~~~~~ 38 (281)
T d2gf3a1 3 HFDVIVVGAGSMGMAAGYQLAKQG--VKTLLVDAFDPP 38 (281)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCC
Confidence 347899999999999999999999 999999997654
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=94.59 E-value=0.013 Score=51.13 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEec
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGS 900 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~ 900 (1129)
+++||+|+|||+|.+|..-|..|.+.|++|+++..
T Consensus 9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~ 43 (113)
T d1pjqa1 9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNAL 43 (113)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 56899999999999999999999999999999864
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=94.40 E-value=0.016 Score=54.63 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=31.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
|||+|||+|.-|...|..|++ .|++|++++|.+.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~--~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCK--QGHEVQGWLRVPQ 34 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCC
T ss_pred CEEEEECcCHHHHHHHHHHHH--CCCceEEEEcCHH
Confidence 589999999999999999999 6799999999653
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=94.28 E-value=0.0073 Score=64.55 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=34.5
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
...+|+|||+|++||++|..+.+.| .+|+|+||....||
T Consensus 4 ~~~DVvVIG~G~AGl~AAl~aa~~G--~~V~liEK~~~~~g 42 (336)
T d2bs2a2 4 QYCDSLVIGGGLAGLRAAVATQQKG--LSTIVLSLIPVKRS 42 (336)
T ss_dssp EECSEEEECCSHHHHHHHHHHHTTT--CCEEEECSSCGGGS
T ss_pred eecCEEEECcCHHHHHHHHHHHHCC--CCEEEEecCCCCCC
Confidence 3568999999999999999999999 99999999875544
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.21 E-value=0.017 Score=53.40 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=33.9
Q ss_pred CCCCCCeEEEEccCcchhhhHHHhhcccCeEEEEEEe
Q psy12350 527 EPFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLRF 563 (1129)
Q Consensus 527 ~~~~~k~v~ViG~g~sa~~~~~~l~~~~~~v~~~~r~ 563 (1129)
.+++||||+|||||..|.+-+..|.+.+++||++...
T Consensus 9 ~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred eeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3689999999999999999999999999999999753
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=94.14 E-value=0.016 Score=50.65 Aligned_cols=36 Identities=8% Similarity=0.139 Sum_probs=33.2
Q ss_pred CCCCCeEEEEccCcchhhhHHHhhcccCeEEEEEEe
Q psy12350 528 PFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLRF 563 (1129)
Q Consensus 528 ~~~~k~v~ViG~g~sa~~~~~~l~~~~~~v~~~~r~ 563 (1129)
+++||+|+|||+|.+|..-+..|.+.+++|+++...
T Consensus 9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~ 44 (113)
T d1pjqa1 9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALT 44 (113)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 688999999999999999999999999999998653
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.88 E-value=0.022 Score=51.19 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=30.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
|+|+|+|+|.-|...|+.|.+ .|++|+++|+++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~--~g~~v~vid~d~ 33 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSE--KGHDIVLIDIDK 33 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCCcceecCCh
Confidence 589999999999999999999 669999999965
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=93.88 E-value=0.0073 Score=57.31 Aligned_cols=147 Identities=18% Similarity=0.219 Sum_probs=79.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCCeeEE
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAEL 945 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~i~~v 945 (1129)
+.+||+|+|+|+|-+|--++..|++.+.+++++.|... .++... . .+... .. +..+
T Consensus 15 ~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~----------ka~~l~--~----~~~~~--~~------~~~~ 70 (170)
T d1nyta1 15 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVS----------RAEELA--K----LFAHT--GS------IQAL 70 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH----------HHHHHH--H----HTGGG--SS------EEEC
T ss_pred CCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHH----------HHHHHH--H----HHhhc--cc------cccc
Confidence 46799999999999999999999999999999877421 111000 0 00000 01 1111
Q ss_pred eCCcEEecCCcEeeccEEEEcc--CccCcCCCCCCCCCeeecCCcccccccceeecCCCCcE-----EEccccccchhHH
Q psy12350 946 TPTGVRFQDGSYEQVDIILCCT--GYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMF-----ILGVPRHTLLFNL 1018 (1129)
Q Consensus 946 ~~~~V~~~dG~~~~~D~VI~aT--G~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~-----~iG~~~~~~~~~~ 1018 (1129)
.- .+-...++|.||-|| |..++.+.++.+. +.... -+|+-+..|. ++-+ ..|.......+.+
T Consensus 71 ~~-----~~~~~~~~dliIN~Tp~G~~~~~~~~~~~~---~~~~~--~v~D~vY~P~-~T~ll~~A~~~G~~~~i~Gl~M 139 (170)
T d1nyta1 71 SM-----DELEGHEFDLIINATSSGISGDIPAIPSSL---IHPGI--YCYDMFYQKG-KTPFLAWCEQRGSKRNADGLGM 139 (170)
T ss_dssp CS-----GGGTTCCCSEEEECCSCGGGTCCCCCCGGG---CCTTC--EEEESCCCSS-CCHHHHHHHHTTCCEEECTHHH
T ss_pred cc-----ccccccccceeecccccCcccCCCCCcHHH---hccCc--EEEEeecCCC-CCHHHHHHHHcCCCcccCCHHH
Confidence 11 111123689999998 4444333222110 11111 1122222221 1111 1122112234678
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q psy12350 1019 FDLQVRLFQQLMQGHITLPSKEEMLADTKQE 1049 (1129)
Q Consensus 1019 ~e~qa~~~a~~l~g~~~lp~~~~~~~~~~~~ 1049 (1129)
.-.||...-+.|.|.. |+.++|.+...++
T Consensus 140 Li~Qa~~~f~lwtG~~--~~~~~~~~~l~~~ 168 (170)
T d1nyta1 140 LVAQAAHAFLLWHGVL--PDVEPVIKQLQEE 168 (170)
T ss_dssp HHHHHHHHHHHHHSSC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC--CCHHHHHHHHHHh
Confidence 8899999999999965 6778887776654
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=93.62 E-value=0.026 Score=51.49 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=33.0
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..++||+|||+|--|.++|..|+..+...+++++|++.
T Consensus 3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~ 40 (146)
T d1ez4a1 3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK 40 (146)
T ss_dssp TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence 44689999999999999999999977667999999854
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=93.44 E-value=0.028 Score=53.95 Aligned_cols=36 Identities=17% Similarity=0.107 Sum_probs=31.2
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+..+||+|||||.-|.+.|..|.+ .+++|+++.|++
T Consensus 5 ~~m~KI~ViGaG~wGtAlA~~La~--~g~~V~l~~r~~ 40 (189)
T d1n1ea2 5 LYLNKAVVFGSGAFGTALAMVLSK--KCREVCVWHMNE 40 (189)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHT--TEEEEEEECSCH
T ss_pred ceeceEEEECCCHHHHHHHHHHHH--cCCeEEEEEecH
Confidence 344689999999999999999999 669999998854
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=93.28 E-value=0.013 Score=63.06 Aligned_cols=36 Identities=19% Similarity=0.455 Sum_probs=31.3
Q ss_pred ccCccccccCCchhhHHHHHH-----hhCCCcceEEEcccCCc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLT-----EAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~-----~~g~~~~v~v~E~~~~~ 776 (1129)
..+|+|||||++|+++|..|. +.| ++|+||||++.+
T Consensus 7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G--~~v~vlEr~~~~ 47 (360)
T d1pn0a1 7 YCDVLIVGAGPAGLMAARVLSEYVRQKPD--LKVRIIDKRSTK 47 (360)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTT--CCEEEECSSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCC--CcEEEEcCCCCC
Confidence 458899999999999999996 467 999999998754
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=93.06 E-value=0.015 Score=61.96 Aligned_cols=39 Identities=18% Similarity=0.331 Sum_probs=35.0
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
.-.+++|||+|++||.+|.++.+.| .+|+|+||.+..||
T Consensus 6 ~~~DVlVVG~G~AGl~AAl~aa~~G--~~V~lleK~~~~gg 44 (330)
T d1neka2 6 REFDAVVIGAGGAGMRAALQISQSG--QTCALLSKVFPTRS 44 (330)
T ss_dssp EEESCEEECCSHHHHHHHHHHHHTT--CCCEEECSSCGGGS
T ss_pred ccCCEEEECcCHHHHHHHHHHHHcC--CeEEEEeCCCCCCC
Confidence 4568999999999999999999999 89999999876665
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.78 E-value=0.035 Score=54.05 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=30.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
|+|+|||.|.-|+..|..|++ .|++|+.+|.+.
T Consensus 1 MkI~ViGlG~vGl~~a~~la~--~g~~V~g~D~n~ 33 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSA--RGHEVIGVDVSS 33 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHH--TTCEEEEECSCH
T ss_pred CEEEEECCCHhHHHHHHHHHh--CCCcEEEEeCCH
Confidence 589999999999999999999 679999999854
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=92.65 E-value=0.02 Score=60.20 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=34.8
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
..+|+|||+|.+|+.+|.++.+.+++.+|+|+||....||
T Consensus 5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g 44 (311)
T d1kf6a2 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS 44 (311)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGS
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCC
Confidence 4689999999999999999999876689999999875554
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=92.58 E-value=0.064 Score=57.69 Aligned_cols=32 Identities=38% Similarity=0.522 Sum_probs=29.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQA 773 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~ 773 (1129)
.|++|||+|++|+.+|.+|.+.| .+|+|+|+.
T Consensus 8 ~dvIVVGsG~aG~v~A~rLaeaG--~~VlvLEaG 39 (370)
T d3coxa1 8 VPALVIGSGYGGAVAALRLTQAG--IPTQIVEMG 39 (370)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCC
Confidence 47899999999999999999999 999999984
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=92.37 E-value=0.026 Score=59.03 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=29.4
Q ss_pred CccccccCCchhhHHHHHHhhCCCc-ceEEEcccC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGF-TCTTFEQAD 774 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~-~v~v~E~~~ 774 (1129)
+|+|||+|.+|+++|++|.+.| . +|+|+||++
T Consensus 3 dViIIGaGi~G~s~A~~La~~G--~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRG--WNNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT--CCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcC--CCcEEEEeCCC
Confidence 6899999999999999999998 5 699999974
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.31 E-value=0.026 Score=60.60 Aligned_cols=40 Identities=18% Similarity=0.072 Sum_probs=33.7
Q ss_pred eccCccccccCCchhhHHHHHHh----hCCCcceEEEcccCCcCcc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTE----AGNGFTCTTFEQADNIGGT 779 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~----~g~~~~v~v~E~~~~~GG~ 779 (1129)
+-.+|+|||+|++|++||.++.+ .| .+|+|+||....||.
T Consensus 20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G--~~V~vieK~~~~gg~ 63 (356)
T d1jnra2 20 VETDILIIGGGFSGCGAAYEAAYWAKLGG--LKVTLVEKAAVERSG 63 (356)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHTTTT--CCEEEECSSCTTTCS
T ss_pred EecCEEEECCCHHHHHHHHHHHHHHHhCc--CEEEEEeCCCCCCCh
Confidence 34689999999999999999875 46 899999998766654
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.23 E-value=0.063 Score=50.84 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=31.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
+|+|+|||+|.+|.-+|..|++.|.+|+++.|.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~ 34 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRT 34 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 699999999999999999999999999999874
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=92.05 E-value=0.026 Score=61.03 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=31.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
.+++|||+|++|+.+|.+|.+.| ++|+|+|+....
T Consensus 5 yDviIVGsG~aG~v~A~~La~~G--~kVlvLEaG~~~ 39 (379)
T d2f5va1 5 YDVVIVGSGPIGCTYARELVGAG--YKVAMFDIGEID 39 (379)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCC
T ss_pred ccEEEECcCHHHHHHHHHHhhCC--CeEEEEecCCCC
Confidence 47899999999999999999999 999999985543
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.97 E-value=0.067 Score=51.33 Aligned_cols=34 Identities=32% Similarity=0.504 Sum_probs=30.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||||.-|..-|..++. .|++|+++|+++
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~ 37 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAA--TGHTVVLVDQTE 37 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred eEEEEEECcCHHHHHHHHHHHh--CCCcEEEEECCh
Confidence 3799999999999999999999 679999999854
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=91.60 E-value=0.053 Score=48.70 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=29.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
|+++|||+|.-|...|+.|.+ .|++|+++|++.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~--~g~~vvvid~d~ 33 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHR--MGHEVLAVDINE 33 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHH--TTCCCEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCeEEEecCcH
Confidence 579999999999999999999 669999999854
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=91.42 E-value=0.031 Score=58.46 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=31.5
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGT 779 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~ 779 (1129)
..+++|||+|++||+||..+.+.| +|+|+||.+..||.
T Consensus 7 ~~DVvVVG~G~AGl~AA~~a~~~g---~V~llEK~~~~gG~ 44 (305)
T d1chua2 7 SCDVLIIGSGAAGLSLALRLADQH---QVIVLSKGPVTEGS 44 (305)
T ss_dssp ECSEEEECCSHHHHHHHHHHTTTS---CEEEECSSCTTC--
T ss_pred cCCEEEECccHHHHHHHHHhhcCC---CEEEEECCCCCCCc
Confidence 468999999999999999987644 79999999877764
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=91.42 E-value=0.031 Score=60.29 Aligned_cols=31 Identities=32% Similarity=0.439 Sum_probs=29.4
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQA 773 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~ 773 (1129)
|++|||+|++|+.+|.+|.+.| .+|+|+|+.
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG--~~VlvLEaG 34 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAG--VQTLMLEMG 34 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--CCEEEEESS
T ss_pred eEEEeCcCHHHHHHHHHHHHCc--CeEEEEecC
Confidence 6899999999999999999999 999999984
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=91.36 E-value=0.074 Score=49.66 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=30.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
|||.|||+|.-|-+.|+.|++ .|++|+++||++
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~--~g~~V~~~d~~~ 33 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRR--RGHYLIGVSRQQ 33 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred CEEEEEeecHHHHHHHHHHHH--CCCEEEEEECCc
Confidence 589999999999999999999 679999999853
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=91.20 E-value=0.099 Score=48.01 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=30.4
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++++||+|||||--|.++|..|+..+. .+++++|.++
T Consensus 5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~-~el~L~D~~~ 41 (154)
T d1pzga1 5 QRRKKVAMIGSGMIGGTMGYLCALREL-ADVVLYDVVK 41 (154)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSS
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCC-ceEEEEEecc
Confidence 346899999999999999988887554 3899999755
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=91.03 E-value=0.071 Score=50.92 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=31.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+.++|+|||||.-|..-|..++. .|++|+++|+++
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~ 37 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSAS--KGTPILMKDINE 37 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHH--TTCCEEEECSSH
T ss_pred CCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence 34789999999999999999999 679999999954
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.52 E-value=0.12 Score=47.01 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=32.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..+||+|||||--|.++|..|+..+...+++++|..+
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~ 41 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence 3579999999999999999999977666899999854
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=90.50 E-value=0.077 Score=50.36 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=28.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQ 42 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~ 42 (1129)
|+|+|||||.-|.+.|..|.+ .+++|+++.|
T Consensus 1 MkI~ViGaG~~GtalA~~la~--~g~~V~l~~r 31 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVD--NGNEVRIWGT 31 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHH--HCCEEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCEEEEEEe
Confidence 589999999999999999999 5689999876
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=90.37 E-value=0.13 Score=46.48 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=31.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+||+|||||--|.+.|..|+..+...+++++|.++
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~ 35 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence 58999999999999999999977667999999855
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.61 E-value=0.24 Score=45.43 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=32.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.+.||+|||+|--|-++|..|...+...+++|+|.+.
T Consensus 18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~ 54 (159)
T d2ldxa1 18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADT 54 (159)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4468999999999999999999977667899999854
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=89.58 E-value=0.16 Score=46.39 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=30.6
Q ss_pred cceEEEEc-CChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIG-GGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIG-aG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+||| .|--|-..|+.|++ .|++|+++|++.
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~--~G~~V~~~d~~~ 43 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRA--SGYPISILDRED 43 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHT--TTCCEEEECTTC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHH--cCCCcEeccccc
Confidence 36999999 69999999999999 679999999854
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=89.57 E-value=0.11 Score=49.28 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=31.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
.|+|+|||+|..|.-+|..|++.|.+|+++.+.
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~ 33 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDID 33 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence 389999999999999999999999999999874
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=89.42 E-value=0.15 Score=45.92 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=30.6
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.||+|||||--|.++|..|+..+.-.++.++|...
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 36 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence 58999999999999999999977666899999855
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.06 E-value=0.12 Score=49.39 Aligned_cols=33 Identities=33% Similarity=0.493 Sum_probs=31.1
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
|+|+|||+|..|..+|..++..|.+|+++++.+
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 37 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 799999999999999999999999999998754
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=88.69 E-value=0.16 Score=45.94 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=30.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+||+|||+|--|.++|..|+..+.-.+++++|.+.
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 36 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE 36 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 79999999999999999999866556899999744
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=88.08 E-value=0.22 Score=44.92 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=30.0
Q ss_pred ceEEEEcC-ChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGG-GAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGa-G~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
|||+|||| |.-|.++|..|+..+.-.++.++|...
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH 36 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence 58999996 999999999999966546899999854
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.95 E-value=0.19 Score=48.04 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=29.4
Q ss_pred ceEEEE-cCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVI-GGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~II-GaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
|||+|| |+|.-|.+.|+.|++ .|++|++..|++
T Consensus 1 Mki~vigGaG~iG~alA~~la~--~G~~V~l~~R~~ 34 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLAT--LGHEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHT--TTCEEEEEESSH
T ss_pred CEEEEEeCCcHHHHHHHHHHHH--CCCEEEEEECCH
Confidence 589999 679999999999999 679999998854
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=87.92 E-value=0.32 Score=44.57 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=32.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++.||+|||+|--|-++|..|...+.--+++++|++.
T Consensus 19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~ 55 (160)
T d1i0za1 19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLE 55 (160)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 4579999999999999999999977656899999854
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=87.88 E-value=0.25 Score=44.45 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=31.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.||+|||+|.-|-++|..|...+.-.+++++|.++
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~ 36 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 36 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 58999999999999999999977767899999754
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.61 E-value=0.21 Score=44.87 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=30.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+||+|||||--|.++|..|+..+.-.++.++|.++
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~ 35 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK 35 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence 58999999999999999998877667899999743
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=87.10 E-value=0.23 Score=47.68 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=27.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
|+|+|||.|.-||..|..++ .|++|+.+|-++
T Consensus 1 MkI~ViGlG~vGl~~a~~~a---~g~~V~g~Din~ 32 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS---LQNEVTIVDILP 32 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT---TTSEEEEECSCH
T ss_pred CEEEEECCChhHHHHHHHHH---CCCcEEEEECCH
Confidence 58999999999999998775 368999999754
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=87.06 E-value=0.22 Score=46.02 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=30.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
|||.|||-|.-|...|+.|++ .|++|.+++|++
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~--~G~~V~~~d~~~ 33 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLK--AGYSLVVSDRNP 33 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHH--TTCEEEEECSCH
T ss_pred CEEEEEehhHHHHHHHHHHHH--CCCeEEEEeCCc
Confidence 579999999999999999999 679999999854
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.75 E-value=0.042 Score=55.00 Aligned_cols=30 Identities=17% Similarity=0.047 Sum_probs=26.4
Q ss_pred ccccccCCchhhHHHHHHhhCCCcceEEEccc
Q psy12350 742 NIVDRHGPGGLTATKRLTEAGNGFTCTTFEQA 773 (1129)
Q Consensus 742 ~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~ 773 (1129)
|+|||+|.+|+++|.+|++.| ++|+++|+.
T Consensus 3 V~VIGaGi~GlstA~~L~~~G--~~v~v~e~~ 32 (246)
T d1kifa1 3 VVVIGAGVIGLSTALCIHERY--HSVLQPLDV 32 (246)
T ss_dssp EEEECCSHHHHHHHHHHHHHH--TTTSSSCEE
T ss_pred EEEECchHHHHHHHHHHHHCC--CCceEEeee
Confidence 689999999999999999999 777777663
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=86.38 E-value=0.14 Score=48.67 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=30.7
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
|+|+|||+|..|..+|..++..|.+|+++++.+
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE 37 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 689999999999999999999999999998754
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=86.18 E-value=0.35 Score=41.93 Aligned_cols=36 Identities=25% Similarity=0.443 Sum_probs=30.6
Q ss_pred CCcceEEEEcCCh-----------HHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 7 SPTLHIGVIGGGA-----------GGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 7 ~~~~~V~IIGaG~-----------aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.+.++|+|||+|| ++..|+++|++ .|++++++.-++
T Consensus 5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke--~g~~~iliN~NP 51 (127)
T d1a9xa3 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALRE--EGYRVINVNSNP 51 (127)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHH--HTCEEEEECSCT
T ss_pred CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHH--cCCeEEEecCch
Confidence 3568999999996 79999999999 669999987654
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.11 E-value=0.28 Score=44.05 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=30.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
|||+|||+|--|-++|..|+..+.-.+++++|.++
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE 35 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence 58999999999999999999866556899999744
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=85.61 E-value=0.3 Score=45.18 Aligned_cols=32 Identities=16% Similarity=0.108 Sum_probs=29.9
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
||+|||+|..|.=+|..|++.|.+|+++.|.+
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~ 33 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP 33 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCceEEEEcCH
Confidence 79999999999999999999999999998743
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=85.36 E-value=0.34 Score=43.53 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=29.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+||+|||+|--|.++|..|+..+. .++.++|..+
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l-~dl~l~D~~~ 35 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKEL-GDIVLLDIVE 35 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCc-ceEEEEeecc
Confidence 699999999999999999988554 3899999754
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=85.23 E-value=0.44 Score=43.11 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=29.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+.||+|||+|--|-++|..|.+.+.. +++|+|.++
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~-el~L~Di~~ 37 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLG-DVVLFDIVK 37 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCC-eEEEEeccC
Confidence 46999999999999999888886653 899999854
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=84.93 E-value=0.35 Score=44.05 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=29.7
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
|||.|||.|-.|.+.|+.|++ .|++|+++++.+
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~--~g~~v~~~~~~~ 33 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRS--RGVEVVTSLEGR 33 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHH--TTCEEEECCTTC
T ss_pred CEEEEEcHHHHHHHHHHHHHH--CCCeEEEEcCch
Confidence 589999999999999999999 669999998754
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=84.58 E-value=0.16 Score=54.22 Aligned_cols=33 Identities=36% Similarity=0.582 Sum_probs=30.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD 774 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~ 774 (1129)
.+++|||+|++|..+|.+|.+.| .+|+|+|+..
T Consensus 3 YD~IIVGsG~aG~v~A~rLae~g--~~VlvLEaG~ 35 (360)
T d1kdga1 3 YDYIIVGAGPGGIIAADRLSEAG--KKVLLLERGG 35 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCC--CeEEEEEccC
Confidence 46799999999999999999998 8999999864
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=84.35 E-value=0.32 Score=52.31 Aligned_cols=41 Identities=24% Similarity=0.527 Sum_probs=34.8
Q ss_pred CCCCCCCCC--eEEEEcCCccHHHHHHHHHhcC-CEEEEEecCC
Q psy12350 862 RTPEPFAGK--QAVVVGSGQSGLDITLDIATTG-KQAVVVGSGQ 902 (1129)
Q Consensus 862 ~~~~~~~gk--~VvVVG~G~Sg~eiA~~la~~~-~~V~vv~~~~ 902 (1129)
.+++++.|| .++|||+|.+|+=+|..|++.+ .+|.|+++++
T Consensus 15 ~~p~~~~~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~ 58 (391)
T d1gpea1 15 SDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF 58 (391)
T ss_dssp CCGGGTTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred CCcccccCCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence 355666676 4999999999999999999988 5999999875
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=84.25 E-value=0.63 Score=39.69 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=29.9
Q ss_pred CcceEEEEcCCh-----------HHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGA-----------GGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~-----------aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..++|+|||+|| ++..|+++|++ .|++++++.-++
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~--~g~~~IliN~NP 48 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALRE--DGYETIMVNCNP 48 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHH--TTCEEEEECCCT
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHh--cCCeEEEEecCh
Confidence 458999999995 88999999999 669999987654
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=84.01 E-value=0.75 Score=39.08 Aligned_cols=35 Identities=11% Similarity=0.216 Sum_probs=31.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
...||.|||||-=|...|..+.+ .|+++.++|..+
T Consensus 10 ~~~kigIlGgGQL~rMla~aA~~--lG~~v~v~d~~~ 44 (111)
T d1kjqa2 10 AATRVMLLGSGELGKEVAIECQR--LGVEVIAVDRYA 44 (111)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHT--TTCEEEEEESST
T ss_pred CCCEEEEEeCCHHHHHHHHHHHH--CCCEEEEEcCCC
Confidence 34789999999999999999999 779999999865
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=83.95 E-value=0.37 Score=45.20 Aligned_cols=33 Identities=30% Similarity=0.594 Sum_probs=30.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
|+|.|||-|.-|...|++|++ .|++|.+++|+.
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~--~G~~V~~~dr~~ 34 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAE--KGFKVAVFNRTY 34 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSH
T ss_pred CEEEEEeehHHHHHHHHHHHH--CCCeEEEEECCH
Confidence 689999999999999999999 679999999843
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=83.63 E-value=0.5 Score=44.89 Aligned_cols=38 Identities=29% Similarity=0.462 Sum_probs=34.0
Q ss_pred CCCCCCeEEEEc-CCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 865 EPFAGKQAVVVG-SGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 865 ~~~~gk~VvVVG-~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
.+++||+|+|.| +|-.|.++|..|++.|.+|+++.|..
T Consensus 19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~ 57 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 57 (191)
T ss_dssp SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence 468899999999 57899999999999999999998753
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=83.52 E-value=0.27 Score=43.71 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=29.8
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
|+++|+|.|..|..+|..|.+.|.+|++++..
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d 32 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 32 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCc
Confidence 78999999999999999999999999999763
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.42 E-value=0.51 Score=43.83 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=30.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+|||.|--|-+.|+.|++.|...+|..+|++.
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~ 36 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 47999999999999999999977667888899854
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.06 E-value=0.45 Score=44.13 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=30.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+..+|+|+|+|+-|+.++..++. .|.+|+++++++
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~--~G~~vi~~~~~~ 61 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKA--MGAETYVISRSS 61 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSS
T ss_pred CCCEEEEECCCCcchhHHHHhhh--ccccccccccch
Confidence 34689999999999999998888 568999999854
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=83.01 E-value=0.55 Score=42.98 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=31.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcCC-EEEEEecC
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTGK-QAVVVGSG 901 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~~-~V~vv~~~ 901 (1129)
++.+|+|+|||+|..|..++..|...+. +++++.|.
T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt 57 (159)
T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT 57 (159)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence 4678999999999999999999999875 68888763
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=82.91 E-value=0.36 Score=42.35 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=27.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEE-EEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCT-TFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~-v~E~~~~ 45 (1129)
+.+|+|+|||-+|.+.++++.+. .+++++ .||-++.
T Consensus 3 ~~~v~I~GaG~~G~~l~~~l~~~-~~~~iv~fiDdd~~ 39 (126)
T d2dt5a2 3 KWGLCIVGMGRLGSALADYPGFG-ESFELRGFFDVDPE 39 (126)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCC-SSEEEEEEEESCTT
T ss_pred CceEEEEcCCHHHHHHHHhHhhc-CCcEEEEEEeCchH
Confidence 46999999999999999887654 478866 4565544
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.91 E-value=0.5 Score=43.04 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=33.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
.+.||+|+|+|-|..|--+|..+...|.+|++.+..
T Consensus 21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~d 56 (163)
T d1li4a1 21 MIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEID 56 (163)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred eecCCEEEEeccccccHHHHHHHHhCCCeeEeeecc
Confidence 467999999999999999999999999999999763
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.63 E-value=0.48 Score=43.63 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=30.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|.|||-|--|...|++|++ .|++|.++||+.
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~--~g~~v~~~d~~~ 34 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLK--AGYLLNVFDLVQ 34 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHH--TTCEEEEECSSH
T ss_pred CEEEEEEEHHHHHHHHHHHHH--CCCeEEEEECch
Confidence 479999999999999999999 679999999854
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.58 E-value=0.51 Score=43.55 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=30.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+..+|+|+|+|+.|+.++..++. .|.+|+++++++
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~--~G~~Vi~~~~~~ 61 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARA--MGLHVAAIDIDD 61 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred CCCEEEEeeccccHHHHHHHHHH--cCCccceecchh
Confidence 34689999999999999999988 568999998854
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=82.54 E-value=0.55 Score=43.59 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=30.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+.++|+|+|||-++-+++..|.+ .+.+|+|+.|..
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~--~g~~i~I~nRt~ 51 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLLS--LDCAVTITNRTV 51 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSH
T ss_pred CCCEEEEECCcHHHHHHHHHhcc--cceEEEeccchH
Confidence 35799999999999999999999 457899998843
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=81.76 E-value=0.45 Score=44.24 Aligned_cols=38 Identities=8% Similarity=0.041 Sum_probs=33.7
Q ss_pred CCCCCCeEEEEccCcchhhhHHHhhcccCeEEEEEEec
Q psy12350 527 EPFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLRFD 564 (1129)
Q Consensus 527 ~~~~~k~v~ViG~g~sa~~~~~~l~~~~~~v~~~~r~~ 564 (1129)
.++++|+|+|+|+|-+|--++..|.+.+++|+++-|++
T Consensus 14 ~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~ 51 (171)
T d1p77a1 14 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF 51 (171)
T ss_dssp CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence 46889999999999999888888888888999999964
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.59 E-value=0.58 Score=44.94 Aligned_cols=34 Identities=24% Similarity=0.499 Sum_probs=29.8
Q ss_pred cceEEEEcC-ChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGG-GAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGa-G~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.+||+|+|| |.-|-..++.|++ .|++|+++.|+.
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~--~g~~V~~~~R~~ 37 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQ--AGYEVTVLVRDS 37 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHH--TTCEEEEEESCG
T ss_pred CCEEEEECCCCHHHHHHHHHHHH--CcCEEEEEEcCh
Confidence 368999995 9999999999999 569999998854
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=81.57 E-value=0.5 Score=41.72 Aligned_cols=31 Identities=16% Similarity=0.453 Sum_probs=29.1
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
+|+|+|+|..|..+|..|.+.|.+|++++..
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d 32 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 32 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcceecCC
Confidence 7999999999999999999999999999864
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=81.37 E-value=0.55 Score=43.52 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=29.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..+|+|+|+|+-|+.++..++. .|.+|+++|+++
T Consensus 27 g~~vlV~G~G~vG~~~~~~ak~--~Ga~vi~v~~~~ 60 (170)
T d1e3ja2 27 GTTVLVIGAGPIGLVSVLAAKA--YGAFVVCTARSP 60 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred CCEEEEEcccccchhhHhhHhh--hcccccccchHH
Confidence 4689999999999999999988 568999999854
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=81.10 E-value=0.59 Score=42.29 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
-+.||+|+|+|-|..|--+|..+...|.+|++++..
T Consensus 20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~D 55 (163)
T d1v8ba1 20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEID 55 (163)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred eecCCEEEEecccccchhHHHHHHhCCCEEEEEecC
Confidence 467999999999999999999999999999999864
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=80.70 E-value=0.66 Score=41.62 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=28.0
Q ss_pred ceEEEEc-CChHHHHHHHHhh-cCCCCceEEEEcccC
Q psy12350 10 LHIGVIG-GGAGGLTATKRLT-EPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIG-aG~aGl~aA~~l~-~~~~~~~v~v~E~~~ 44 (1129)
+||+||| ||.-|-+.|..|+ +.+...++.++|..+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~ 37 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP 37 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence 5899999 5999999998875 335567899998743
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=80.46 E-value=0.75 Score=41.18 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=29.1
Q ss_pred eEEEEcC-ChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 11 HIGVIGG-GAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 11 ~V~IIGa-G~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
||+|||| |.-|.++|..|+..+.--+++++|.++
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~ 36 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH 36 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence 7999996 999999999999876555899998743
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.43 E-value=0.62 Score=43.22 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=29.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~ 44 (1129)
...|+|+|+|+-|+.++..++.. |. +|++.|+++
T Consensus 27 gd~VlI~G~G~iG~~~~~~a~~~--G~~~Vi~~d~~~ 61 (171)
T d1pl8a2 27 GHKVLVCGAGPIGMVTLLVAKAM--GAAQVVVTDLSA 61 (171)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCH
T ss_pred CCEEEEECCCccHHHHHHHHHHc--CCceEEeccCCH
Confidence 36899999999999999999984 45 799999854
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=80.19 E-value=0.65 Score=43.34 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=30.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..|.|||-|.-|...|+.|++ .|++|.+|+|+.
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~--~G~~V~v~dr~~ 35 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMND--HGFVVCAFNRTV 35 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHH--TTCCEEEECSST
T ss_pred CcEEEEeEhHHHHHHHHHHHH--CCCeEEEEcCCH
Confidence 579999999999999999999 679999999854
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=80.05 E-value=0.62 Score=43.05 Aligned_cols=36 Identities=11% Similarity=0.126 Sum_probs=29.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+.++|+|||+|-++-+++..|.+.|. -+|+|+.|+.
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~-~~I~I~nR~~ 51 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGF-EKLKIYARNV 51 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTC-CCEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEecccH
Confidence 45799999999999999999999542 2788998843
|