Psyllid ID: psy12355

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQG
Secondary Structure (PSIPRED)
ccEEEEccccHHHHHHHHHHHccccEEEEEccccccccccHHHHHccccEEEEEEcccccHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHccccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccHHHHHHHHHHcccccEEEEcccccccccccHHHHHccccEEEEcccccccHHHHHHHHHccccccHHHEEEEEEHHHHHHHHHHHHHccccccEEEEEcccc
Coil and Loop (DISEMBL)
mmlyldplgtencltLGINVTKMGGKlmlvgmgpqmvsVPLVNACAKEIDILSCfryvndypdalemvasgkcpvrkliTHNFKLEEAVEAFKTASKKADDTIKIMIHCRQG
Flexible Loop (DISEMBL)
mmlyldplgteNCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKtaskkaddtiKIMIHCRQG
Low Complexity Region (SEG)
MMLYLDPLGTENCLTLGINVTkmggklmlvgmgPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQG
Disordered region (IsUnstruct)
**LYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH****
Disordered Region (DISOPRED)
MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR**
Disordered Region (DISEMBL)
MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQG
Disordered Region (DISPRO)
MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
P27867	357	Sorbitol dehydrogenase OS	yes	N/A	0.883	0.277	0.485	5e-21
Q64442	357	Sorbitol dehydrogenase OS	yes	N/A	0.883	0.277	0.485	2e-20
P07846	354	Sorbitol dehydrogenase OS	N/A	N/A	0.883	0.279	0.475	5e-20
Q58D31	356	Sorbitol dehydrogenase OS	yes	N/A	0.883	0.278	0.475	5e-20
Q00796	357	Sorbitol dehydrogenase OS	yes	N/A	0.883	0.277	0.455	7e-19
Q4R639	357	Sorbitol dehydrogenase OS	N/A	N/A	0.883	0.277	0.435	1e-18
Q5R5F3	357	Sorbitol dehydrogenase OS	no	N/A	0.883	0.277	0.445	1e-17
Q96V44	377	L-arabinitol 4-dehydrogen	N/A	N/A	0.928	0.275	0.365	1e-16
Q1PSI9	366	L-idonate 5-dehydrogenase	yes	N/A	0.937	0.286	0.388	2e-15
P35497	357	Sorbitol dehydrogenase 1	yes	N/A	0.883	0.277	0.37	2e-15

>sp|P27867|DHSO_RAT Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sord PE=1 SV=4

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 69/101 (68%), Gaps = 2/101 (1%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
           G E+ +  GI  T  GG L++VGMGP+M+++PLV+A  +E+DI   FRY N +P A+ M+
Sbjct: 252 GAESSVQTGIYATHSGGTLVVVGMGPEMINLPLVHAAVREVDIKGVFRYCNTWPMAVSML 311

Query: 69  ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
           AS    V+ L+TH F LE+AVEAF+TA K     +K+MI C
Sbjct: 312 ASKTLNVKPLVTHRFPLEKAVEAFETAKKGLG--LKVMIKC 350

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.
Rattus norvegicus (taxid: 10116)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 4

>sp|Q64442|DHSO_MOUSE Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=1 SV=3

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 68/101 (67%), Gaps = 2/101 (1%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
           G E+ +  GI  T  GG L++VGMG +MV++PLV+A  +E+DI   FRY N +P A+ M+
Sbjct: 252 GAESSVQTGIYATHSGGTLVIVGMGAEMVNLPLVHAAIREVDIKGVFRYCNTWPMAISML 311

Query: 69  ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
           AS    V+ L+TH F LE+AVEAF+TA K     +K+MI C
Sbjct: 312 ASKTLNVKPLVTHRFPLEKAVEAFETAKKGVG--LKVMIKC 350

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|P07846|DHSO_SHEEP Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 SV=1

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 66/101 (65%), Gaps = 2/101 (1%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
           G E  +  GI  T  GG L+LVG+G +M SVPLV+A  +E+DI   FRY N +P A+ M+
Sbjct: 249 GVETSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAATREVDIKGVFRYCNTWPMAISML 308

Query: 69  ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
           AS    V+ L+TH F LE+A+EAF+T+ K     +K+MI C
Sbjct: 309 ASKSVNVKPLVTHRFPLEKALEAFETSKKGLG--LKVMIKC 347

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Ovis aries (taxid: 9940)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q58D31|DHSO_BOVIN Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 SV=3

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 66/101 (65%), Gaps = 2/101 (1%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
           G E  +  GI  T  GG L+LVG+G +M SVPLV+A  +E+DI   FRY N +P A+ M+
Sbjct: 251 GVETSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAATREVDIKGVFRYCNTWPMAISML 310

Query: 69  ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
           AS    V+ L+TH F LE+A+EAF+T+ K     +K+MI C
Sbjct: 311 ASKSVNVKPLVTHRFPLEKALEAFETSKKGLG--LKVMIKC 349

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q00796|DHSO_HUMAN Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4

 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 66/101 (65%), Gaps = 2/101 (1%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
           G E  +  GI  T+ GG L+LVG+G +M +VPL++A  +E+DI   FRY N +P A+ M+
Sbjct: 252 GAEASIQAGIYATRSGGNLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISML 311

Query: 69  ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
           AS    V+ L+TH F LE+A+EAF+T  K     +KIM+ C
Sbjct: 312 ASKSVNVKPLVTHRFPLEKALEAFETFKKGLG--LKIMLKC 350

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q4R639|DHSO_MACFA Sorbitol dehydrogenase OS=Macaca fascicularis GN=SORD PE=2 SV=3

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 66/101 (65%), Gaps = 2/101 (1%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
           G E  +  GI  T+ GG L+LVG+G +M ++PL++A  +E+DI   FRY N +P A+ M+
Sbjct: 252 GAEASIQAGIYATRSGGTLVLVGLGSEMTTIPLLHAAVREVDIKGVFRYCNTWPVAISML 311

Query: 69  ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
           AS    ++ L+TH F LE+A+EAF+T  K     +KIM+ C
Sbjct: 312 ASKSVNIKPLVTHRFPLEKALEAFETFKKGLG--LKIMLKC 350

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q5R5F3|DHSO_PONAB Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=2 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 64/101 (63%), Gaps = 2/101 (1%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
           G    +  GI  T  GG L+LVG+G +M ++PL++A  +E+DI   FRY N +P A+ M+
Sbjct: 252 GAGASIQAGIYATHSGGTLVLVGLGSEMTTIPLLHAAIREVDIKGVFRYCNTWPVAISML 311

Query: 69  ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
           AS    V+ LITH F LE+A+EAF+T  K     +KIM+ C
Sbjct: 312 ASKSVNVKPLITHRFPLEKALEAFETFKKGLG--LKIMLKC 350

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q96V44|LAD_HYPJE L-arabinitol 4-dehydrogenase OS=Hypocrea jecorina GN=lad1 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/104 (36%), Positives = 64/104 (61%)

Query: 5   LDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDA 64
           L+  G E+ +   I  +K GGK+ ++G+G   +S+P + A  +E+DI   +RY N +P A
Sbjct: 271 LECTGVESSIAAAIWASKFGGKVFVIGVGKNEISIPFMRASVREVDIQLQYRYSNTWPRA 330

Query: 65  LEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108
           + ++ SG   + K +TH F LE+AV+AF+T++      IK+MI 
Sbjct: 331 IRLIESGVIDLSKFVTHRFPLEDAVKAFETSADPKSGAIKVMIQ 374

Catalyzes the NAD-dependent oxidation of L-arabinitol to L-xylulose in the fungal L-arabinose catabolic pathway. L-arabinose catabolism is important for using plant material as a carbon source. Can partially compensate for xylitol dehydrogenase in xdh1 mutants. Also oxidizes galactitol to L-xylo-3-hexulose as an alternative to the standard Leloir pathway for D-galactose metabolism. NAPD cannot act as a cosubstrate.

Hypocrea jecorina (taxid: 51453)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q1PSI9|IDND_VITVI L-idonate 5-dehydrogenase OS=Vitis vinifera GN=VIT_16s0100g00290 PE=1 SV=2

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 3/108 (2%)

Query: 3   LYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYP 62
           +  D +G    ++  +N T+ GGK+ LVG+    ++VPL  A A+E+DI+  FRY N +P
Sbjct: 259 VSFDCVGFNKTMSTALNATRAGGKVCLVGLAQSEMTVPLTPAAAREVDIVGIFRYRNTWP 318

Query: 63  DALEMVASGKCPVRKLITHNFKL--EEAVEAFKTASKKADDTIKIMIH 108
             LE + SGK  V+ LITH F    ++  EAF+T S +  + IK+M +
Sbjct: 319 LCLEFLRSGKIDVKPLITHRFTFSQKDVEEAFET-SARGGNAIKVMFN 365

Involved in the catabolism of ascorbate to tartrate. The enzyme has no activity with NADP(+).

Vitis vinifera (taxid: 29760)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|P35497|DHSO1_YEAST Sorbitol dehydrogenase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SOR1 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 1/100 (1%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY-VNDYPDALEM 67
           G + C+   +  TK+GG ++ VGMG    + P+     KE+ ++ CFRY   DY DA+ +
Sbjct: 254 GADVCIDAAVKTTKVGGTMVQVGMGKNYTNFPIAEVSGKEMKLIGCFRYSFGDYRDAVNL 313

Query: 68  VASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107
           VA+GK  V+ LITH FK E+A +A+        + +K +I
Sbjct: 314 VATGKVNVKPLITHKFKFEDAAKAYDYNIAHGGEVVKTII 353

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
13096215	352	Chain A, Ketose Reductase (Sorbitol Dehy	0.964	0.306	0.694	1e-38
156145614	350	sorbitol dehydrogenase [Pyrrhocoris apte	0.973	0.311	0.513	8e-26
322800418	316	hypothetical protein SINV_08416 [Solenop	0.946	0.335	0.537	2e-25
391347677	366	PREDICTED: sorbitol dehydrogenase-like [	0.901	0.275	0.534	1e-24
332021414	350	Sorbitol dehydrogenase [Acromyrmex echin	0.946	0.302	0.5	2e-24
48096138	349	PREDICTED: sorbitol dehydrogenase-like i	0.928	0.297	0.533	3e-24
380016980	349	PREDICTED: sorbitol dehydrogenase-like i	0.928	0.297	0.533	3e-24
340729217	357	PREDICTED: sorbitol dehydrogenase-like i	0.937	0.294	0.504	9e-24
340729215	350	PREDICTED: sorbitol dehydrogenase-like i	0.937	0.3	0.504	1e-23
350417139	350	PREDICTED: sorbitol dehydrogenase-like [	0.937	0.3	0.504	1e-23

>gi|13096215|pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly gi|4106364|gb|AAD02817.1| NADP(H)-dependent ketose reductase [Bemisia argentifolii]

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 92/108 (85%)

Query: 5   LDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDA 64
           +D  G E C+T+GIN+T+ GG LMLVGMG QMV+VPLVNACA+EIDI S FRY NDYP A
Sbjct: 245 IDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDYPIA 304

Query: 65  LEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQG 112
           LEMVASG+C V++L+TH+FKLE+ V+AF+ A KKAD+TIK+MI CRQG
Sbjct: 305 LEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQG 352

Source: Bemisia argentifolii

Species: Bemisia argentifolii

Genus: Bemisia

Family: Aleyrodidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156145614|gb|ABU53620.1| sorbitol dehydrogenase [Pyrrhocoris apterus]

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 56/109 (51%), Positives = 79/109 (72%)

Query: 3   LYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYP 62
           + +D  G++  + +G   T+ GGK ++VGMG   V++PLV A A+E+DI+  FRY NDYP
Sbjct: 242 ISIDCGGSQRTVNIGFKATRNGGKFVMVGMGSNEVTIPLVAASAREVDIIGVFRYCNDYP 301

Query: 63  DALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ 111
            AL MVASGK  V++LITH+FKLEE V+AF+TA K   + IK++IHC +
Sbjct: 302 LALSMVASGKVNVKRLITHHFKLEETVKAFETARKFIGNPIKVIIHCNE 350

Source: Pyrrhocoris apterus

Species: Pyrrhocoris apterus

Genus: Pyrrhocoris

Family: Pyrrhocoridae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800418|gb|EFZ21422.1| hypothetical protein SINV_08416 [Solenopsis invicta]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 75/106 (70%)

Query: 5   LDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDA 64
           +D  G +  + L I VTK GG ++LVG+G   V VPL++A  +E+DI   FRYVNDY DA
Sbjct: 211 IDASGAQASIRLAILVTKSGGTVVLVGLGAPEVQVPLISALIREVDIRGVFRYVNDYSDA 270

Query: 65  LEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR 110
           LE+VASGK  V+ LITHNFK+EE  +AF+T+   A   IK+MIHC+
Sbjct: 271 LELVASGKVNVKPLITHNFKIEETKQAFETSRTGAGGAIKVMIHCK 316

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391347677|ref|XP_003748082.1| PREDICTED: sorbitol dehydrogenase-like [Metaseiulus occidentalis]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/101 (53%), Positives = 73/101 (72%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
           G E+ + L INVT+ GG++++VGMGP  V VPLV+A  KE+DI   FRY N YP A+E++
Sbjct: 264 GVESSVGLAINVTRQGGRVVMVGMGPPQVKVPLVDAVIKELDIRGVFRYANCYPTAIELI 323

Query: 69  ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
           ASGK  V+ LITH FKLEEA +AF+T    A + +K++I C
Sbjct: 324 ASGKVDVKPLITHRFKLEEAAKAFETTRTGAGNAVKVIIDC 364

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021414|gb|EGI61782.1| Sorbitol dehydrogenase [Acromyrmex echinatior]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 74/106 (69%)

Query: 5   LDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDA 64
           +D  G ++ + L I  TK GG ++LVGMG   V +PL+NA  +E+DI   FRYVNDY DA
Sbjct: 245 IDASGAQSSIRLAILATKSGGVIVLVGMGAPEVQIPLINALIREVDIRGVFRYVNDYGDA 304

Query: 65  LEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR 110
           L++++SGK  V+ L+THN+KLEE  +AF+T    A   IK+MIHC+
Sbjct: 305 LDLISSGKIDVKSLVTHNYKLEETKQAFETCRTGAGGAIKVMIHCK 350

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48096138|ref|XP_392401.1| PREDICTED: sorbitol dehydrogenase-like isoform 2 [Apis mellifera]

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/105 (53%), Positives = 74/105 (70%), Gaps = 1/105 (0%)

Query: 5   LDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDA 64
           +D  G E+ + L I  TK GG  +LVGMGP  V VPL+NA  +E+DI   FRY NDY DA
Sbjct: 245 IDACGAESSIRLAIFATKSGGVAVLVGMGPPEVRVPLINALIREVDIRGVFRYANDYADA 304

Query: 65  LEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
           L+++AS K  V+ LITHN+KLE+ V+AF+T SK   + +K+MIHC
Sbjct: 305 LDLLASRKIDVKPLITHNYKLEDTVQAFET-SKSGQNVVKVMIHC 348

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016980|ref|XP_003692445.1| PREDICTED: sorbitol dehydrogenase-like isoform 1 [Apis florea]

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/105 (53%), Positives = 74/105 (70%), Gaps = 1/105 (0%)

Query: 5   LDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDA 64
           +D  G E+ + L I  TK GG  +LVGMGP  V VPL+NA  +E+DI   FRY NDY DA
Sbjct: 245 IDACGAESSIRLAIFSTKSGGVAVLVGMGPPEVRVPLINALVREVDIRGVFRYANDYADA 304

Query: 65  LEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
           L+++AS K  V+ LITHN+KLE+ V+AF+T SK   + +K+MIHC
Sbjct: 305 LDLLASRKIDVKPLITHNYKLEDTVQAFET-SKSGQNVVKVMIHC 348

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729217|ref|XP_003402903.1| PREDICTED: sorbitol dehydrogenase-like isoform 2 [Bombus terrestris]

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 73/105 (69%)

Query: 5   LDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDA 64
           +D  G ++ + L I VTK GG  +LVGMG   V +PL+NA  +E+DI   FRY NDY DA
Sbjct: 252 IDACGAQSMIRLAILVTKSGGVAVLVGMGAPEVQIPLMNALVREVDIRGVFRYANDYGDA 311

Query: 65  LEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
           L+++ S K  V+ LITHN+KLEE V+AF+T+    D+ +K+MIHC
Sbjct: 312 LDLLTSKKIDVKPLITHNYKLEETVQAFETSKSGQDNVVKVMIHC 356

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729215|ref|XP_003402902.1| PREDICTED: sorbitol dehydrogenase-like isoform 1 [Bombus terrestris]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 73/105 (69%)

Query: 5   LDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDA 64
           +D  G ++ + L I VTK GG  +LVGMG   V +PL+NA  +E+DI   FRY NDY DA
Sbjct: 245 IDACGAQSMIRLAILVTKSGGVAVLVGMGAPEVQIPLMNALVREVDIRGVFRYANDYGDA 304

Query: 65  LEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
           L+++ S K  V+ LITHN+KLEE V+AF+T+    D+ +K+MIHC
Sbjct: 305 LDLLTSKKIDVKPLITHNYKLEETVQAFETSKSGQDNVVKVMIHC 349

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417139|ref|XP_003491275.1| PREDICTED: sorbitol dehydrogenase-like [Bombus impatiens]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 73/105 (69%)

Query: 5   LDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDA 64
           +D  G ++ + L I VTK GG  +LVGMG   V +PL+NA  +E+DI   FRY NDY DA
Sbjct: 245 IDACGAQSMIRLAILVTKSGGVAVLVGMGAPEVQIPLMNALVREVDIRGVFRYANDYGDA 304

Query: 65  LEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
           L+++ S K  V+ LITHN+KLEE V+AF+T+    D+ +K+MIHC
Sbjct: 305 LDLLTSKKIDVKPLITHNYKLEETVQAFETSKSGQDNVVKVMIHC 349

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
FB|FBgn0024289	360	Sodh-1 "Sorbitol dehydrogenase	0.928	0.288	0.403	2.6e-16
FB|FBgn0022359	360	Sodh-2 "Sorbitol dehydrogenase	0.928	0.288	0.413	3.4e-16
UNIPROTKB|F1P183	372	SORD "Uncharacterized protein"	0.883	0.266	0.386	1.1e-15
RGD|3734	357	Sord "sorbitol dehydrogenase"	0.883	0.277	0.415	1.2e-15
MGI|MGI:98266	357	Sord "sorbitol dehydrogenase"	0.883	0.277	0.415	5.8e-15
UNIPROTKB|P07846	354	SORD "Sorbitol dehydrogenase"	0.883	0.279	0.405	1.2e-14
UNIPROTKB|Q58D31	356	SORD "Sorbitol dehydrogenase"	0.883	0.278	0.405	1.2e-14
UNIPROTKB|F1SN27	356	SORD "Sorbitol dehydrogenase"	0.883	0.278	0.405	2.1e-14
UNIPROTKB|F1PXG0	356	SORD "Uncharacterized protein"	0.883	0.278	0.386	7.4e-14
ZFIN|ZDB-GENE-040426-1231	354	sord "sorbitol dehydrogenase"	0.883	0.279	0.366	2.6e-13

FB|FBgn0024289 Sodh-1 "Sorbitol dehydrogenase 1" [Drosophila melanogaster (taxid:7227)]

 Score = 206 (77.6 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 42/104 (40%), Positives = 60/104 (57%)

Query:     5 LDPLGTENCLTLGINVTXXXXXXXXXXXXPQMVSVPLVNACAKEIDILSCFRYVNDYPDA 64
             +D  G E+   L I  T               + +PL+NA A+E+DI   FRY NDY  A
Sbjct:   245 IDCCGAESSARLAIFATRSGGIVVVVGMGAAEIKLPLINALAREVDIRGVFRYCNDYAAA 304

Query:    65 LEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108
             L +VASGK  V++L+TH+F ++E  +AF+T+ K     IK+MIH
Sbjct:   305 LALVASGKVNVKRLVTHHFDIKETAKAFETSRKGLGGAIKVMIH 348

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=NAS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

FB|FBgn0022359 Sodh-2 "Sorbitol dehydrogenase-2" [Drosophila melanogaster (taxid:7227)]

 Score = 205 (77.2 bits), Expect = 3.4e-16, P = 3.4e-16
 Identities = 43/104 (41%), Positives = 59/104 (56%)

Query:     5 LDPLGTENCLTLGINVTXXXXXXXXXXXXPQMVSVPLVNACAKEIDILSCFRYVNDYPDA 64
             +D  G E+   L I  T               V +PL+NA A+EIDI   FRY NDY  A
Sbjct:   245 IDCCGAESSARLAIFATRSGGVVVVVGMGAPEVKLPLINALAREIDIRGVFRYCNDYSAA 304

Query:    65 LEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108
             L +VASGK  V++L+TH++ + E  EAF+T+ +     IK+MIH
Sbjct:   305 LALVASGKVNVKRLVTHHYDITETAEAFETSRRGTGGAIKVMIH 348

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=ISS;TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1P183 SORD "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 201 (75.8 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 39/101 (38%), Positives = 60/101 (59%)

Query:     9 GTENCLTLGINVTXXXXXXXXXXXXPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
             G + C+   I  T            P+MV+VP+VNA  +E+DI   FRY N +P A+ ++
Sbjct:   267 GVQACIQASIYATRSGGTLVLVGLGPEMVTVPIVNAAVREVDIRGIFRYCNTWPVAISLL 326

Query:    69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
             AS +  ++ L+TH F LE+A+EAF+T   K  + +KIM+ C
Sbjct:   327 ASKRINIKPLVTHRFPLEKALEAFETT--KRGEGVKIMLKC 365

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006062 "sorbitol catabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

GO:0046370 "fructose biosynthetic process" evidence=IEA

GO:0051160 "L-xylitol catabolic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

RGD|3734 Sord "sorbitol dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 200 (75.5 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 42/101 (41%), Positives = 60/101 (59%)

Query:     9 GTENCLTLGINVTXXXXXXXXXXXXPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
             G E+ +  GI  T            P+M+++PLV+A  +E+DI   FRY N +P A+ M+
Sbjct:   252 GAESSVQTGIYATHSGGTLVVVGMGPEMINLPLVHAAVREVDIKGVFRYCNTWPMAVSML 311

Query:    69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
             AS    V+ L+TH F LE+AVEAF+TA K     +K+MI C
Sbjct:   312 ASKTLNVKPLVTHRFPLEKAVEAFETAKKGLG--LKVMIKC 350

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0006060 "sorbitol metabolic process" evidence=ISO

GO:0006062 "sorbitol catabolic process" evidence=ISO

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0008270 "zinc ion binding" evidence=ISO;IDA

GO:0009725 "response to hormone stimulus" evidence=IDA

GO:0016020 "membrane" evidence=ISO

GO:0030317 "sperm motility" evidence=ISO;ISS

GO:0031514 "motile cilium" evidence=ISS

GO:0031667 "response to nutrient levels" evidence=IEP

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0042493 "response to drug" evidence=IEP

GO:0042802 "identical protein binding" evidence=IDA

GO:0046370 "fructose biosynthetic process" evidence=ISO

GO:0046686 "response to cadmium ion" evidence=IDA

GO:0046688 "response to copper ion" evidence=IDA

GO:0051160 "L-xylitol catabolic process" evidence=ISO

GO:0051164 "L-xylitol metabolic process" evidence=ISO

GO:0051287 "NAD binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

MGI|MGI:98266 Sord "sorbitol dehydrogenase" [Mus musculus (taxid:10090)]

 Score = 194 (73.4 bits), Expect = 5.8e-15, P = 5.8e-15
 Identities = 42/101 (41%), Positives = 59/101 (58%)

Query:     9 GTENCLTLGINVTXXXXXXXXXXXXPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
             G E+ +  GI  T             +MV++PLV+A  +E+DI   FRY N +P A+ M+
Sbjct:   252 GAESSVQTGIYATHSGGTLVIVGMGAEMVNLPLVHAAIREVDIKGVFRYCNTWPMAISML 311

Query:    69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
             AS    V+ L+TH F LE+AVEAF+TA K     +K+MI C
Sbjct:   312 ASKTLNVKPLVTHRFPLEKAVEAFETAKKGVG--LKVMIKC 350

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005929 "cilium" evidence=IEA

GO:0006060 "sorbitol metabolic process" evidence=IDA

GO:0006062 "sorbitol catabolic process" evidence=ISO

GO:0008270 "zinc ion binding" evidence=ISO

GO:0009725 "response to hormone stimulus" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030317 "sperm motility" evidence=IDA

GO:0042802 "identical protein binding" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0046370 "fructose biosynthetic process" evidence=ISO

GO:0046686 "response to cadmium ion" evidence=ISO

GO:0046688 "response to copper ion" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051160 "L-xylitol catabolic process" evidence=ISO

GO:0051164 "L-xylitol metabolic process" evidence=ISO

GO:0051287 "NAD binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO;IDA

UNIPROTKB|P07846 SORD "Sorbitol dehydrogenase" [Ovis aries (taxid:9940)]

 Score = 191 (72.3 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 41/101 (40%), Positives = 57/101 (56%)

Query:     9 GTENCLTLGINVTXXXXXXXXXXXXPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
             G E  +  GI  T             +M SVPLV+A  +E+DI   FRY N +P A+ M+
Sbjct:   249 GVETSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAATREVDIKGVFRYCNTWPMAISML 308

Query:    69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
             AS    V+ L+TH F LE+A+EAF+T+ K     +K+MI C
Sbjct:   309 ASKSVNVKPLVTHRFPLEKALEAFETSKKGLG--LKVMIKC 347

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0030317 "sperm motility" evidence=ISS

GO:0031514 "motile cilium" evidence=ISS

UNIPROTKB|Q58D31 SORD "Sorbitol dehydrogenase" [Bos taurus (taxid:9913)]

 Score = 191 (72.3 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 41/101 (40%), Positives = 57/101 (56%)

Query:     9 GTENCLTLGINVTXXXXXXXXXXXXPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
             G E  +  GI  T             +M SVPLV+A  +E+DI   FRY N +P A+ M+
Sbjct:   251 GVETSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAATREVDIKGVFRYCNTWPMAISML 310

Query:    69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
             AS    V+ L+TH F LE+A+EAF+T+ K     +K+MI C
Sbjct:   311 ASKSVNVKPLVTHRFPLEKALEAFETSKKGLG--LKVMIKC 349

GO:0030317 "sperm motility" evidence=ISS

GO:0031514 "motile cilium" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0051160 "L-xylitol catabolic process" evidence=IEA

GO:0046370 "fructose biosynthetic process" evidence=IEA

GO:0006062 "sorbitol catabolic process" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1SN27 SORD "Sorbitol dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 189 (71.6 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 41/101 (40%), Positives = 57/101 (56%)

Query:     9 GTENCLTLGINVTXXXXXXXXXXXXPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
             G E  +  GI  T             +M SVPLV+A  +E+DI   FRY N +P A+ M+
Sbjct:   251 GVEASIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAATREVDIKGVFRYCNTWPMAISML 310

Query:    69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
             AS    V+ L+TH F LE+A+EAF+T+ K     +K+MI C
Sbjct:   311 ASKSVNVKPLVTHRFPLEKALEAFETSKKGLG--LKVMIKC 349

GO:0051287 "NAD binding" evidence=IEA

GO:0051160 "L-xylitol catabolic process" evidence=IEA

GO:0046370 "fructose biosynthetic process" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006062 "sorbitol catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PXG0 SORD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 184 (69.8 bits), Expect = 7.4e-14, P = 7.4e-14
 Identities = 39/101 (38%), Positives = 57/101 (56%)

Query:     9 GTENCLTLGINVTXXXXXXXXXXXXPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
             G E+ +  GI  T             +M +VPL +A  +E+DI   FRY N +P A+ M+
Sbjct:   251 GVESAIQSGIYATRAGGTLVLVGLGSEMTTVPLTHASTREVDIKGVFRYCNTWPMAISML 310

Query:    69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
             AS    V+ L+TH F LE+A+EAF+TA K     +K+M+ C
Sbjct:   311 ASKAVNVKPLVTHRFPLEKALEAFETARKGTG--LKVMLKC 349

GO:0051287 "NAD binding" evidence=IEA

GO:0051160 "L-xylitol catabolic process" evidence=IEA

GO:0046370 "fructose biosynthetic process" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006062 "sorbitol catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1231 sord "sorbitol dehydrogenase" [Danio rerio (taxid:7955)]

 Score = 179 (68.1 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 37/101 (36%), Positives = 56/101 (55%)

Query:     9 GTENCLTLGINVTXXXXXXXXXXXXPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
             G ++ +   I  T             +M +VPL+NA  +E+DI   FRY N +P A+ M+
Sbjct:   249 GVQSSIQTAIYATRSGGVVVSVGLGAEMTTVPLLNAAVREVDIRGVFRYCNTWPVAISML 308

Query:    69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
             AS K  V+ L+TH F LE AV+AF+T  +     +K+M+ C
Sbjct:   309 ASKKVNVKPLVTHRFPLEHAVQAFETTRQGLG--VKVMLKC 347

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	112
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	5e-44
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	5e-23
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	5e-19
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	2e-16
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	1e-15
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	1e-14
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	1e-14
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	8e-13
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	5e-11
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	4e-10
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	2e-08
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	4e-08
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	7e-08
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	9e-08
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	1e-07
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	3e-07
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	9e-07
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	9e-07
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	2e-06
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	4e-06
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	6e-06
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	7e-06
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	2e-05
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	3e-05
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	8e-05
TIGR01202	308	TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacter	1e-04
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	2e-04
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	3e-04
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	5e-04
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	0.002
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	0.002
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	0.002
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	0.004

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score =  145 bits (368), Expect = 5e-44
 Identities = 51/101 (50%), Positives = 68/101 (67%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
           G E+C+   I  T+ GG ++LVGMG   V++PL  A  +EIDI   FRY N YP A+E++
Sbjct: 243 GAESCIQTAIYATRPGGTVVLVGMGKPEVTLPLSAASLREIDIRGVFRYANTYPTAIELL 302

Query: 69  ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
           ASGK  V+ LITH F LE+AVEAF+TA+K     IK++I  
Sbjct: 303 ASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVIEG 343

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 91.0 bits (226), Expect = 5e-23
 Identities = 43/104 (41%), Positives = 63/104 (60%), Gaps = 3/104 (2%)

Query: 5   LDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDA 64
            D +G    ++  +  T+ GGK+ LVGMG   ++VPL  A A+E+D++  FRY N +P  
Sbjct: 259 FDCVGFNKTMSTALEATRAGGKVCLVGMGHNEMTVPLTPAAAREVDVVGVFRYRNTWPLC 318

Query: 65  LEMVASGKCPVRKLITHNFKL--EEAVEAFKTASKKADDTIKIM 106
           LE + SGK  V+ LITH F    +E  EAF+T S +  + IK+M
Sbjct: 319 LEFLRSGKIDVKPLITHRFGFSQKEVEEAFET-SARGGNAIKVM 361

Length = 364

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 79.6 bits (197), Expect = 5e-19
 Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 5/101 (4%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
           G    L   + V + GG ++ VGM    V +PL    AKE+D+   FR+ +++ +A+ ++
Sbjct: 240 GAPAALASALRVVRPGGTVVQVGMLGGPVPLPLNALVAKELDLRGSFRFDDEFAEAVRLL 299

Query: 69  ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDT--IKIMI 107
           A+G+  VR LIT  F LEEA EAF  A   AD T  +K+ +
Sbjct: 300 AAGRIDVRPLITAVFPLEEAAEAFALA---ADRTRSVKVQL 337

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 72.4 bits (178), Expect = 2e-16
 Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 3/102 (2%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNAC-AKEIDILSCFRYVN--DYPDAL 65
           G+   L   +   + GG +++VG+              +KE+ +    R     D+  AL
Sbjct: 247 GSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFERAL 306

Query: 66  EMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107
           +++ASGK    KLITH   L++A EA++  + + ++ IK+++
Sbjct: 307 DLLASGKIDPEKLITHRLPLDDAAEAYELFADRKEEAIKVVL 348

Length = 350

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 70.7 bits (174), Expect = 1e-15
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 14  LTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVN-DYPDALEMVASGK 72
           +   + +   GG+++LVG+    V+ P      KE+ IL        D+PD ++++ SGK
Sbjct: 241 MEEAVELVAHGGRVVLVGLSKGPVTFPDPEFHKKELTILGSRNATREDFPDVIDLLESGK 300

Query: 73  CPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108
                LITH F  E+  EAF          IK++I 
Sbjct: 301 VDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIE 336

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score = 67.6 bits (166), Expect = 1e-14
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 5/103 (4%)

Query: 9   GTENCLTLGINVTKMGGKLMLVG--MGPQMVSVPLVNACAKEIDILSCFRY-VNDYPDAL 65
           G+       + + + GG+++  G       V++       +EI I   +     DY +AL
Sbjct: 243 GSPEAQAQALELVRKGGRILFFGGLPKGSTVNIDPNLIHYREITITGSYAASPEDYKEAL 302

Query: 66  EMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108
           E++ASGK  V+ LITH F LE+  EAF+ A+     ++KI+I 
Sbjct: 303 ELIASGKIDVKDLITHRFPLEDIEEAFELAADG--KSLKIVIT 343

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 67.2 bits (165), Expect = 1e-14
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 17  GINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCP 74
            I   + GG +++ G+      VS+       KE+ I+  F     +P A+ ++ SGK  
Sbjct: 243 AIEYARRGGTVLVFGVYAPDARVSISPFEIFQKELTIIGSFINPYTFPRAIALLESGKID 302

Query: 75  VRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108
           V+ L++H   LEE  EA +         +K+++ 
Sbjct: 303 VKGLVSHRLPLEEVPEALEGMRSGG--ALKVVVV 334

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 62.4 bits (152), Expect = 8e-13
 Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 10/107 (9%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGM---GPQMVSVPLVNACAKEIDILSC-FR----YVND 60
           G +  L L   +    G+L++ G    GP+ V     N   K ID+++   R     +  
Sbjct: 207 GHQWPLDLAGELVAERGRLVIFGYHQDGPRPVPFQTWNW--KGIDLINAVERDPRIGLEG 264

Query: 61  YPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107
             +A++++A G+  +  L+TH F LEE  +AF+ A ++ D  IK +I
Sbjct: 265 MREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRPDGFIKGVI 311

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 57.6 bits (140), Expect = 5e-11
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 2/102 (1%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEM 67
           G +  L   I+  +  G  + V +  + +S    +   KE  +     Y   D+ + +++
Sbjct: 250 GVQATLDTAIDALRPRGTAVNVAIWEKPISFNPNDLVLKEKTLTGSICYTREDFEEVIDL 309

Query: 68  VASGKCPVRKLITHNFKLEEAVE-AFKTASKKADDTIKIMIH 108
           +ASGK     LIT    LE+ VE  F+      +  +KI++ 
Sbjct: 310 LASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILVS 351

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 54.7 bits (132), Expect = 4e-10
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 7   PLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALE 66
           P     CL     VT+  G ++ VGMG      P++    KEI +   FR+  ++  A+ 
Sbjct: 246 PSSINTCL----EVTRAKGVMVQVGMGGAPPEFPMMTLIVKEISLKGSFRFTEEFNTAVS 301

Query: 67  MVASGKCPVRKLITHNFKLEEAVEAFKTASKK 98
            +A+G      L++  +   +  EA   A  K
Sbjct: 302 WLANGVINPLPLLSAEYPFTDLEEALIFAGDK 333

Length = 343

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 18  INVTKMGGKLMLVGM-GPQMVSVPLVNACAKEIDILSCFRYVNDY-PDALEMVASGKCPV 75
           I   + GG + ++G+ G  +   P+  A  K + +     +V  Y P  LE++ SG+   
Sbjct: 293 IQAVRKGGTVSIIGVYGGTVNKFPIGAAMNKGLTLRMGQTHVQRYLPRLLELIESGELDP 352

Query: 76  RKLITHNFKLEEAVEAFKTASKKADDTIKI 105
             +ITH   LE+A EA+K   KK D  IK+
Sbjct: 353 SFIITHRLPLEDAPEAYKIFDKKEDGCIKV 382

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 49.1 bits (118), Expect = 4e-08
 Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 18  INVTKMGGKLMLVGM---GPQMVSVPLVNACAKEIDILSCFRYV------NDYPDALEMV 68
           + + + GGK++LVG+      +          KE+ I   +         +++  AL+++
Sbjct: 245 LALARPGGKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSYSAPFPGDEWRTALDLL 304

Query: 69  ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107
           ASGK  V  LITH   LE+   AF+  + + + + K+++
Sbjct: 305 ASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL 343

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score = 48.4 bits (116), Expect = 7e-08
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGM--GPQMVSVPLVNACAKEIDILSCFRYVNDY-PDAL 65
           G E      + V + GG +  VG+   P  +   L     K +   +    V    P+ L
Sbjct: 245 GFEETFEQAVKVVRPGGTIANVGVYGKPDPL-PLLGEWFGKNLTFKTGLVPVRARMPELL 303

Query: 66  EMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
           +++  GK    KLITH F L++ ++A++    K D  IK++I  
Sbjct: 304 DLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIRP 347

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score = 48.1 bits (115), Expect = 9e-08
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 8   LGTENCLTLGINVTKMGGKLMLVGMGP--QMVSVPLVNACAKEIDILSCF--RYVNDYPD 63
           LG      L ++V + GG+ ++VG+ P      +P+     + I I+  +  R   D P+
Sbjct: 264 LGKPETFKLALDVVRDGGRAVVVGLAPGGATAEIPITRLVRRGIKIIGSYGARPRQDLPE 323

Query: 64  ALEMVASGKCPVRKLITHNFKLEEAVEAFK 93
            + + ASGK     L+TH +KLEE  EA++
Sbjct: 324 LVGLAASGKLDPEALVTHKYKLEEINEAYE 353

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 47  KEIDILSCFRYVNDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIM 106
           KE+D+L        YP A++++ASG+ P   ++TH F LE+  EAF+  ++  DD+IK++
Sbjct: 291 KELDVLGSHLGPYCYPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARG-DDSIKVV 349

Query: 107 I 107
           +
Sbjct: 350 L 350

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 16  LGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPV 75
           L   +   GG +  VG+  + V + L     K I I +     N  P  L++V+SGK   
Sbjct: 251 LCQELVAPGGHIANVGVHGKPVDLHLEKLWIKNITITTGLVDTNTTPMLLKLVSSGKLDP 310

Query: 76  RKLITHNFKLEEAVEAFKTASKKADD-TIKIMI 107
            KL+TH FKL E  +A+ T S  A    +K++I
Sbjct: 311 SKLVTHRFKLSEIEKAYDTFSAAAKHKALKVII 343

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 45.3 bits (108), Expect = 9e-07
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 24  GGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY-VNDYPDALEMVASGKCPVRKLITHN 82
           GG++++VG+G   ++V L +  A+E+ I+  F     D P+ L+++A GK          
Sbjct: 256 GGRIVVVGLGRDKLTVDLSDLIARELRIIGSFGGTPEDLPEVLDLIAKGKL---DPQVET 312

Query: 83  FKLEEAVEAFK 93
             L+E  E  +
Sbjct: 313 RPLDEIPEVLE 323

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 45.3 bits (108), Expect = 9e-07
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 5   LDPLGTENCLTLGINVTKMGGKLMLVGM---GPQMVSVPLVNACAKEIDILSCFRY-VND 60
           +D LG        +   +  G+ + VG+       V++P+    A+E++I+       + 
Sbjct: 238 VDALGIPETCRNSVASLRKRGRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHGMPAHR 297

Query: 61  YPDALEMVASGKCPVRKLITHNFKLEEAVEAFK 93
           Y   L ++ASGK     L+     L+EA +A  
Sbjct: 298 YDAMLALIASGKLDPEPLVGRTISLDEAPDALA 330

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 61  YPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIM 106
           +P  ++++ASGK  + K+IT  F LE  +EA K AS++ D  I I+
Sbjct: 339 FPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASERTDGKITIL 384

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 3/100 (3%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY-VNDYPDALEM 67
           G      L +   +  G+L+LVG G ++      +   K+  ++  + + V D  +  E 
Sbjct: 240 GNTAARRLALEAVRPWGRLVLVGEGGELTIEVSNDLIRKQRTLIGSWYFSVPDMEECAEF 299

Query: 68  VASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107
           +A  K  V +L+TH F L++A EA+   ++    + K++ 
Sbjct: 300 LARHKLEVDRLVTHRFGLDQAPEAYALFAQGE--SGKVVF 337

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 43.0 bits (102), Expect = 6e-06
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 10/102 (9%)

Query: 5   LDPLGTENCLTLGINVTKMGGKLMLVGMG-PQMVSVPLVNACAKEIDILSCFRYV----- 58
           L+ +G    L L  ++ + GG +  VG+   +    P ++A  K +      R+      
Sbjct: 240 LEAVGGAAALDLAFDLVRPGGVISSVGVHTAEEFPFPGLDAYNKNLT----LRFGRCPVR 295

Query: 59  NDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKAD 100
           + +P+ L ++ SG+  +  LI H   LEEA EA++   K+  
Sbjct: 296 SLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKV 337

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 41.5 bits (98), Expect = 7e-06
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 4   YLDPLGTENCLTLGINVTKMGGKLMLVGM-GPQMVSVPLVNACAKEIDILSCFRY-VNDY 61
            +D +G    L   + + + GG++++VG+ G   V  PL +   KE+ IL        ++
Sbjct: 63  VIDCVGAPATLEQALELLRPGGRVVVVGLPGGAPVPFPLRDLLLKELTILGSLGGGREEF 122

Query: 62  PDALEMVAS 70
            +ALE++AS
Sbjct: 123 EEALELLAS 131

Length = 131

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 8/101 (7%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILS--CFRYVNDYPDALE 66
           G+ + L L + + +  G ++L        S  L  A   EI ++   C      +  AL 
Sbjct: 223 GSPSGLELALRLVRPRGTVVLKSTYAGPASFDLTKAVVNEITLVGSRC----GPFAPALR 278

Query: 67  MVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107
           ++  G   V  LIT  + LEEA+EAF+ A++     +K+++
Sbjct: 279 LLRKGLVDVDPLITAVYPLEEALEAFERAAEP--GALKVLL 317

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 19/109 (17%)

Query: 14  LTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPD---------- 63
           L   + + +  G+++LVG       +       K + I S    V               
Sbjct: 173 LETALRLLRDRGRVVLVGWYGLKPLLLGEEFHFKRLPIRS--SQVYGIGRYDRPRRWTEA 230

Query: 64  -----ALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107
                AL+++A G+  +  LITH    E+A EA++   +   + +K+++
Sbjct: 231 RNLEEALDLLAEGR--LEALITHRVPFEDAPEAYRLLFEDPPECLKVVL 277

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 22  KMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRY-VNDYPDALEMVASGKCPVRKL 78
           + GG L+LVG+     +  +P      KEI I+        D  +AL+  A GK  ++  
Sbjct: 250 RRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEALDFAAEGK--IKPE 307

Query: 79  ITHNFKLEEAVEAFK 93
           I     L+E  EA++
Sbjct: 308 ILETIPLDEINEAYE 322

Length = 339

>gnl|CDD|130269 TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 2/104 (1%)

Query: 6   DPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVN-DYPDA 64
           D  G  + +   +     GG+++L G   + V+   V A  KE  +     +   D    
Sbjct: 206 DASGDPSLIDTLVRRLAKGGEIVLAGFYTEPVNFDFVPAFMKEARLRIAAEWQPGDLHAV 265

Query: 65  LEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108
            E++ SG   +  LITH     +A EA+ TA     D +K+++ 
Sbjct: 266 RELIESGALSLDGLITHQRPASDAAEAYMTAFSDP-DCLKMILD 308

[Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 308

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 22  KMGGKLMLVG-MGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI 79
             GG+L+L+G + P    +       KEI I+        D  +AL++V  GK  ++ +I
Sbjct: 247 NKGGRLVLIGNVTPDPAPLRPGLLILKEIRIIGSISATKADVEEALKLVKEGK--IKPVI 304

Query: 80  THNFKLEEAVEAFK 93
                LE+  EA +
Sbjct: 305 DRVVSLEDINEALE 318

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 23  MGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLITH 81
            GG++++VG+  +  ++    A  KE+ +     Y   ++ DAL+ +A GK  V  ++T 
Sbjct: 256 PGGRIVVVGVCMESDNIEPALAIRKELTLQFSLGYTPEEFADALDALAEGKVDVAPMVTG 315

Query: 82  NFKLEEAVEAFKTASKKADDTIKIMIH 108
              L+   +AF+ A +  +   KI++ 
Sbjct: 316 TVGLDGVPDAFE-ALRDPEHHCKILVD 341

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 5   LDPLGTENCLTLGINVTKMGGKLMLVGMGP--QMVSVPLVNACAKEIDILSCFRYVN--- 59
            + +G    +   +  T  GG  +++G+    Q +S          +   S F       
Sbjct: 259 FECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGARPRS 318

Query: 60  DYPDALEMVASGKCPVRKLITHNFKLEEAVEAFK 93
           D P  +++  +GK P+ +L+TH   LE+  EAF 
Sbjct: 319 DIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFD 352

Length = 366

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 21/116 (18%)

Query: 8   LGTENCLTLGINVTKMGGKLMLVGM--GPQMVSVPLVNACA----KEIDILSCFRYVNDY 61
            G ++     + V K GG +  V        + +P          K I+   C       
Sbjct: 243 GGGQDTFEQALKVLKPGGTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLC------- 295

Query: 62  PDA-------LEMVASGKCPVRKLITHNF-KLEEAVEAFKTASKKADDTIKIMIHC 109
           P           ++  G+    KL+TH+F   ++  EA      K DD IK +I  
Sbjct: 296 PGGRLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF 351

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 10/81 (12%)

Query: 20  VTKMGGKLMLVGMGP--QMVSVPLVNACAKEIDILSCFRYVN------DYPDALEMVASG 71
           +T+ GG  +  G+      +SVP ++  A+E  +     Y+       D P  L +  SG
Sbjct: 279 ITRRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGS--YMGSCVPRRDIPRYLALYLSG 336

Query: 72  KCPVRKLITHNFKLEEAVEAF 92
           + PV KL+TH   L+E  E F
Sbjct: 337 RLPVDKLLTHRLPLDEINEGF 357

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 5   LDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDA 64
           +D +G++  L L   +   GG+ ++VG G     +P  +    EI ++          + 
Sbjct: 240 IDFVGSDETLALAAKLLAKGGRYVIVGYGGH-GRLPTSDLVPTEISVIG--SLWGTRAEL 296

Query: 65  LEMVA---SGKCPVRKLITHNFKLEEAVEAF 92
           +E+VA   SGK  V+  IT  F LE+A EA 
Sbjct: 297 VEVVALAESGK--VKVEITK-FPLEDANEAL 324

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 3   LYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNAC-AKEIDILSCFRYVN-D 60
           + +D +G    L   + + + GG++++VG       +  +     KE+ I+        D
Sbjct: 204 VVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGTRED 263

Query: 61  YPDALEMV 68
           + +AL+++
Sbjct: 264 FEEALDLL 271

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
KOG0024|consensus	354		99.88
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	99.84
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.84
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	99.81
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.81
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	99.77
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	99.77
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	99.76
PLN02178	375	cinnamyl-alcohol dehydrogenase	99.76
PLN02827	378	Alcohol dehydrogenase-like	99.76
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	99.76
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.75
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	99.75
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	99.75
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.74
PLN02514	357	cinnamyl-alcohol dehydrogenase	99.74
PLN02586	360	probable cinnamyl alcohol dehydrogenase	99.73
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	99.73
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	99.71
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	99.71
PLN02740	381	Alcohol dehydrogenase-like	99.7
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	99.68
PRK10083	339	putative oxidoreductase; Provisional	99.66
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	99.65
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	99.65
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	99.65
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.65
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	99.62
KOG0023|consensus	360		99.62
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	99.61
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	99.61
KOG0022|consensus	375		99.59
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.56
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.56
PLN02702	364	L-idonate 5-dehydrogenase	99.54
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.54
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.52
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.51
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.51
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.5
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.49
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.48
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.48
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.47
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.47
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.47
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.46
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.44
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.44
KOG1197|consensus	336		99.44
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	99.44
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.43
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.41
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.41
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.41
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	99.4
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.39
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.39
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.39
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.39
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.38
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.38
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.38
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.38
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.38
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	99.38
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.37
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.37
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.34
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.33
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.33
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.33
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.32
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.31
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.3
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.3
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.3
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.29
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.28
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.28
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	99.27
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.25
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.23
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.19
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.18
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.16
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.16
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.15
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.14
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.13
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.13
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.13
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.12
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.12
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.12
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.11
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.11
KOG0025|consensus	354		99.1
KOG1198|consensus	347		99.1
PTZ00354	334	alcohol dehydrogenase; Provisional	99.1
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.09
KOG1202|consensus	2376		99.07
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.06
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.0
cd08252	336	AL_MDR Arginate lyase and other MDR family members	98.99
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	98.97
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	98.96
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	98.91
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	98.89
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	98.89
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	98.87
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	98.84
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	98.84
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	98.84
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	98.82
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	98.82
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	98.81
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	98.8
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	98.8
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	98.75
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	98.72
KOG1196|consensus	343		98.66
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	98.65
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	98.64
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	98.63
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	98.61
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	98.59
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.47
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	98.46
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	98.15
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	97.85
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.17
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	93.18
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	92.74
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	92.43
PLN02494	477	adenosylhomocysteinase	92.33
PRK08306	296	dipicolinate synthase subunit A; Reviewed	92.11
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	91.31
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	91.14
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	90.97
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	89.1
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	88.78
TIGR00438	188	rrmJ cell division protein FtsJ.	88.75
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	88.4
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	88.14
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	87.77
PTZ00075	476	Adenosylhomocysteinase; Provisional	87.64
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	87.52
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	87.3
TIGR01534	327	GAPDH-I glyceraldehyde-3-phosphate dehydrogenase,	85.33
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	85.24
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	85.18
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	85.15
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	85.02
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	84.89
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	84.75
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	84.62
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	84.13
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	83.95
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	83.9
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	83.65
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	83.16
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	82.96
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	82.84
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	82.81
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	82.66
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	82.57
PLN02237	442	glyceraldehyde-3-phosphate dehydrogenase B	82.3
PRK00536	262	speE spermidine synthase; Provisional	82.23
KOG1661|consensus	237		82.03
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	81.8
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	81.55

>KOG0024|consensus

Probab=99.88  E-value=1.2e-21  Score=128.00  Aligned_cols=110  Identities=38%  Similarity=0.685  Sum_probs=104.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI   79 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~   79 (112)
                      +|+.|||+|...+++.++.+++.+|+++++|+..+.++|++..+..|+++++|+++|. .+|+.+++++.+|++++++++
T Consensus       243 ~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~~v~~kE~~~~g~fry~~~~y~~ai~li~sGki~~k~lI  322 (354)
T KOG0024|consen  243 PDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGAEEIQFPIIDVALKEVDLRGSFRYCNGDYPTAIELVSSGKIDVKPLI  322 (354)
T ss_pred             CCeEEEccCchHHHHHHHHHhccCCEEEEeccCCCccccChhhhhhheeeeeeeeeeccccHHHHHHHHHcCCcCchhhe
Confidence            5899999999999999999999999999999988899999999999999999999988 599999999999999999999


Q ss_pred             eeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         80 THNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      |++|+++++.+||+++.+++....|+++...
T Consensus       323 T~r~~~~~~~eAf~~~~~~~~~~iKv~i~~~  353 (354)
T KOG0024|consen  323 THRYKFDDADEAFETLQHGEEGVIKVIITGP  353 (354)
T ss_pred             ecccccchHHHHHHHHHhCcCCceEEEEeCC
Confidence            9999999999999999998866799998765

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=99.84  E-value=5.9e-20  Score=123.33  Aligned_cols=108  Identities=21%  Similarity=0.387  Sum_probs=97.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCcccee
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLIT   80 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~~~   80 (112)
                      +|++|||+|.+.++..++++++++|+++.+|.+....++++..++.+++++.|++.+..+++++++++.+|++++.++++
T Consensus       236 ~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~l~~~g~i~~~~~i~  315 (343)
T PRK09880        236 FDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGGAPPEFPMMTLIVKEISLKGSFRFTEEFNTAVSWLANGVINPLPLLS  315 (343)
T ss_pred             CCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHHHHhCCcEEEEEeeccccHHHHHHHHHcCCCCchhheE
Confidence            59999999988889999999999999999998666667788888899999999987778899999999999999888999


Q ss_pred             eeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         81 HNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        81 ~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ++|+|+|+++||+.+.+++. .+|+++.+
T Consensus       316 ~~~~l~~~~~A~~~~~~~~~-~gKvvl~~  343 (343)
T PRK09880        316 AEYPFTDLEEALIFAGDKTQ-AAKVQLVF  343 (343)
T ss_pred             EEEEHHHHHHHHHHHhcCCC-ceEEEEeC
Confidence            99999999999999988873 59999864

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.84  E-value=4.1e-20  Score=122.61  Aligned_cols=107  Identities=24%  Similarity=0.340  Sum_probs=94.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI   79 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~   79 (112)
                      +|++|||+|++.++..++++++++|+++.+|.+..+.++++..++.+++++.++..+. ++++++++++.+|++++.+++
T Consensus       201 ~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~g~i~~~~~i  280 (308)
T TIGR01202       201 YRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTEPVNFDFVPAFMKEARLRIAAEWQPGDLHAVRELIESGALSLDGLI  280 (308)
T ss_pred             CCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecCCCcccccchhhhcceEEEEecccchhHHHHHHHHHHcCCCChhhcc
Confidence            6999999999888999999999999999999876666777778888999999887654 789999999999999998899


Q ss_pred             eeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         80 THNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      +++|||+|+++||+.+.++. ..+|+++.
T Consensus       281 t~~~~l~~~~~A~~~~~~~~-~~~Kv~~~  308 (308)
T TIGR01202       281 THQRPASDAAEAYMTAFSDP-DCLKMILD  308 (308)
T ss_pred             ceeecHHHHHHHHHHHhcCc-CceEEEeC
Confidence            99999999999999987765 34999873

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=99.81  E-value=5e-19  Score=117.55  Aligned_cols=106  Identities=25%  Similarity=0.333  Sum_probs=94.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC-Cc-cccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCcc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP-QM-VSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRK   77 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~-~~-~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~   77 (112)
                      +|+++|+++ +.++.+++++|+++|+++.+|++. .+ ..++...++.+++++.|+...+ .++++++++.++|++++. 
T Consensus       230 ~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~f~~~g~Ikp~-  307 (339)
T COG1064         230 ADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEALDFAAEGKIKPE-  307 (339)
T ss_pred             CcEEEECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCCHHHHHHHHHHHHhCCceee-
Confidence            699999999 899999999999999999999985 44 5578888999999999999766 999999999999988764 


Q ss_pred             ceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         78 LITHNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        78 ~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                       +.+.++++|+++||++|++++. .+|.|+.+.
T Consensus       308 -i~e~~~l~~in~A~~~m~~g~v-~gR~Vi~~~  338 (339)
T COG1064         308 -ILETIPLDEINEAYERMEKGKV-RGRAVIDMS  338 (339)
T ss_pred             -EEeeECHHHHHHHHHHHHcCCe-eeEEEecCC
Confidence             5468999999999999999995 499998765

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.81  E-value=6.7e-19  Score=118.73  Aligned_cols=109  Identities=26%  Similarity=0.462  Sum_probs=97.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCcc-ccChhhhhhcCeeEEeEec-cC-CCHHHHHHHHHcCCCCCcc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMV-SVPLVNACAKEIDILSCFR-YV-NDYPDALEMVASGKCPVRK   77 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~-~~~~~~~~~~~~~l~g~~~-~~-~~~~~~~~~~~~g~~~~~~   77 (112)
                      +|++|||+|++.++.+++++++++|+++.+|.+.... .++...++.|++++.|++. +. .+++++++++++|++++.+
T Consensus       239 ~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~~~~~~~~~~~~~ll~~g~i~~~~  318 (350)
T COG1063         239 ADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFERALDLLASGKIDPEK  318 (350)
T ss_pred             CCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCccCccCHHHHHhcccEEEeccCCCCcccHHHHHHHHHcCCCChhH
Confidence            6999999999999999999999999999999987655 6788889999999999965 44 7899999999999999999


Q ss_pred             ceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         78 LITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        78 ~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +++++++++++++||+.+.+++....|+++.+
T Consensus       319 lit~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~  350 (350)
T COG1063         319 LITHRLPLDDAAEAYELFADRKEEAIKVVLKP  350 (350)
T ss_pred             ceEeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            99999999999999999998664357998864

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=99.77  E-value=6.1e-18  Score=113.64  Aligned_cols=108  Identities=18%  Similarity=0.277  Sum_probs=91.3

Q ss_pred             Cc-EEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccC---hhhhhhcCeeEEeEecc------CCCHHHHHHHHHc
Q psy12355          1 MM-LYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVP---LVNACAKEIDILSCFRY------VNDYPDALEMVAS   70 (112)
Q Consensus         1 ~D-~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~---~~~~~~~~~~l~g~~~~------~~~~~~~~~~~~~   70 (112)
                      +| ++|||+|.+.++..++++++++|+++.+|......+++   +..++.+++++.|++.+      ..+++++++++.+
T Consensus       229 ~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~  308 (347)
T PRK10309        229 FDQLILETAGVPQTVELAIEIAGPRAQLALVGTLHHDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTE  308 (347)
T ss_pred             CCeEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCcccChhhhhHHhhcCcEEEEEeccccCCcchhHHHHHHHHHHc
Confidence            35 89999999888999999999999999999765443333   24578899999998753      2578899999999


Q ss_pred             CCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         71 GKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        71 g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      |+++++++++++|+|+|+++||+.+.+++ ..+|+|+.+
T Consensus       309 g~i~~~~~i~~~~~l~~~~~A~~~~~~~~-~~gKvvv~~  346 (347)
T PRK10309        309 RKLSLEPLIAHRGSFESFAQAVRDLAGNP-MPGKVLLQI  346 (347)
T ss_pred             CCCCchhheEEEeeHHHHHHHHHHHhcCC-cceEEEEeC
Confidence            99988889999999999999999999887 459999875

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=99.77  E-value=4.5e-18  Score=112.12  Aligned_cols=106  Identities=20%  Similarity=0.310  Sum_probs=93.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGKCP   74 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~~~   74 (112)
                      +|++|||+|+..++.+++++++++|+.+.+|.+..  .++++..++... .+++|++..    ..++++++++..+|+++
T Consensus       255 ~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~g-r~~~Gs~~G~~~p~~diP~lv~~y~~Gkl~  333 (366)
T COG1062         255 ADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTG-RVWKGSAFGGARPRSDIPRLVDLYMAGKLP  333 (366)
T ss_pred             CCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHeecc-ceEEEEeecCCccccchhHHHHHHHcCCCc
Confidence            58999999999999999999999999999998764  456666677665 889998853    27999999999999999


Q ss_pred             CccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         75 VRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        75 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +++++|++++|+|++|||+.+.+++.  .|-|+.+
T Consensus       334 ~d~lvt~~~~Le~INeaf~~m~~G~~--IR~Vi~~  366 (366)
T COG1062         334 LDRLVTHTIPLEDINEAFDLMHEGKS--IRSVIRF  366 (366)
T ss_pred             hhHHhhccccHHHHHHHHHHHhCCce--eeEEecC
Confidence            99999999999999999999999985  8877753

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=99.76  E-value=1.4e-17  Score=111.46  Aligned_cols=106  Identities=22%  Similarity=0.378  Sum_probs=91.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccCh-hhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPL-VNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~-~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|++|||+|.+..+..++++++++|+++.+|.... .+++. ..++.+++++.|++.+. ++++++++++.+|++++.++
T Consensus       232 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~i~~~~~  310 (339)
T cd08239         232 ADVAIECSGNTAARRLALEAVRPWGRLVLVGEGGE-LTIEVSNDLIRKQRTLIGSWYFSVPDMEECAEFLARHKLEVDRL  310 (339)
T ss_pred             CCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCCC-cccCcHHHHHhCCCEEEEEecCCHHHHHHHHHHHHcCCCChhHe
Confidence            69999999998878899999999999999997554 23343 45788999999998765 78999999999999998889


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ++++|+|+|+++||+.+++++ . +|+|+.+
T Consensus       311 i~~~~~l~~~~~a~~~~~~~~-~-gKvvi~~  339 (339)
T cd08239         311 VTHRFGLDQAPEAYALFAQGE-S-GKVVFVF  339 (339)
T ss_pred             EEEEecHHHHHHHHHHHHcCC-c-eEEEEeC
Confidence            999999999999999998876 3 9999875

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=99.76  E-value=1.3e-17  Score=113.32  Aligned_cols=105  Identities=18%  Similarity=0.227  Sum_probs=92.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI   79 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~   79 (112)
                      +|+++||+|.+.++..++++++++|+++.+|.+.++.++++..++.+++++.|++.+. .++.++++++.+|++++.  +
T Consensus       243 ~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~~~--i  320 (375)
T PLN02178        243 MDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPLDLPIFPLVLGRKMVGGSQIGGMKETQEMLEFCAKHKIVSD--I  320 (375)
T ss_pred             CcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCCCCccCHHHHHhCCeEEEEeCccCHHHHHHHHHHHHhCCCccc--E
Confidence            5999999998878999999999999999999876566778888889999999998755 789999999999998764  4


Q ss_pred             eeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         80 THNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                       ++|||+|+++||+.+++++. .+|+|+.+
T Consensus       321 -~~~~l~~~~~A~~~~~~~~~-~gkvvi~~  348 (375)
T PLN02178        321 -ELIKMSDINSAMDRLAKSDV-RYRFVIDV  348 (375)
T ss_pred             -EEEeHHHHHHHHHHHHcCCC-ceEEEEEe
Confidence             57999999999999999874 48999886

>PLN02827 Alcohol dehydrogenase-like

Probab=99.76  E-value=1.9e-17  Score=112.61  Aligned_cols=108  Identities=16%  Similarity=0.210  Sum_probs=92.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCCccccCh-hhhhhcCeeEEeEeccC----CCHHHHHHHHHcCCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQMVSVPL-VNACAKEIDILSCFRYV----NDYPDALEMVASGKCP   74 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~-~~~~~~~~~l~g~~~~~----~~~~~~~~~~~~g~~~   74 (112)
                      +|++|||+|.+.++..++++++++ |+++.+|.+..+..++. ..++.+++++.|++...    .+++++++++.+|+++
T Consensus       264 ~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~  343 (378)
T PLN02827        264 ADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEVSAHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIM  343 (378)
T ss_pred             CCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCCccccccHHHHhcCceEEeeecCCCchhhhHHHHHHHHHcCCCC
Confidence            599999999887899999999999 99999998765444444 35778999999987532    5789999999999999


Q ss_pred             CccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         75 VRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        75 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      +.++++++|+|+|+.+||+.+++++.  +|+||.+.
T Consensus       344 ~~~~i~~~~~le~~~~A~~~~~~~~~--~k~vi~~~  377 (378)
T PLN02827        344 IDEFITHNLSFDEINKAFELMREGKC--LRCVIHMP  377 (378)
T ss_pred             hHHheEEEecHHHHHHHHHHHHCCCc--eEEEEEec
Confidence            88889999999999999999998875  89999864

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=99.76  E-value=1.9e-17  Score=111.51  Aligned_cols=105  Identities=19%  Similarity=0.285  Sum_probs=91.6

Q ss_pred             cEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCcccee
Q psy12355          2 MLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLIT   80 (112)
Q Consensus         2 D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~~   80 (112)
                      |++|||+|++.++..++++++++|+++.+|.+..+.++++..++.++.++.|++.+. .+++++++++++|++++.++++
T Consensus       243 d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~g~i~~~~~i~  322 (349)
T TIGR03201       243 WKIFECSGSKPGQESALSLLSHGGTLVVVGYTMAKTEYRLSNLMAFHARALGNWGCPPDRYPAALDLVLDGKIQLGPFVE  322 (349)
T ss_pred             CEEEECCCChHHHHHHHHHHhcCCeEEEECcCCCCcccCHHHHhhcccEEEEEecCCHHHHHHHHHHHHcCCCCcccceE
Confidence            589999999888889999999999999999876556677777888889999988654 7899999999999998877776


Q ss_pred             eeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         81 HNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        81 ~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                       +|||+|+++||+.+.+++. .+|+++.
T Consensus       323 -~~~l~~~~~A~~~~~~~~~-~~k~~~~  348 (349)
T TIGR03201       323 -RRPLDQIEHVFAAAHHHKL-KRRAILT  348 (349)
T ss_pred             -EecHHHHHHHHHHHHcCCc-cceEEec
Confidence             6999999999999999884 4898875

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.75  E-value=1.1e-17  Score=112.46  Aligned_cols=108  Identities=17%  Similarity=0.259  Sum_probs=88.9

Q ss_pred             CcEEEEccc---ChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcC---CC
Q psy12355          1 MMLYLDPLG---TENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASG---KC   73 (112)
Q Consensus         1 ~D~v~d~~g---~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g---~~   73 (112)
                      +|++|||+|   .+.++.+++++++++|+++.+|.+..+.++++..++.+++++.|+..+. .+++++++++.++   +.
T Consensus       223 ~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  302 (341)
T cd08237         223 VDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGVSEYPVPINTRMVLEKGLTLVGSSRSTREDFERAVELLSRNPEVAE  302 (341)
T ss_pred             CcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEeecCCCcccCHHHHhhCceEEEEecccCHHHHHHHHHHHHhCCcccC
Confidence            699999999   4568999999999999999999866566777778899999999988754 7799999999999   34


Q ss_pred             CCccceeeeeCcc---cHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         74 PVRKLITHNFKLE---EAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        74 ~~~~~~~~~~~l~---~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      +++++++++|+++   ++.++++...++.  .+|+|+.++
T Consensus       303 ~l~~~i~~~~~l~~l~~~~~a~~~~~~~~--~gKvvi~~~  340 (341)
T cd08237         303 YLRKLVGGVFPVRSINDIHRAFESDLTNS--WGKTVMEWE  340 (341)
T ss_pred             ChHHHhccccccccHHHHHHHHHHHhhcC--cceEEEEee
Confidence            6788999999985   5666666655543  399999875

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=99.75  E-value=1.4e-17  Score=112.96  Aligned_cols=105  Identities=25%  Similarity=0.400  Sum_probs=91.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGKCP   74 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~~~   74 (112)
                      +|++|||+|.+.++..++++++++|+++.+|....  ...++...++.+++++.|++.+    ..++.++++++.+|+++
T Consensus       260 ~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~i~  339 (371)
T cd08281         260 VDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLSGRLP  339 (371)
T ss_pred             CCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCCceeeecHHHHhhcCCEEEEEecCCCChHHHHHHHHHHHHcCCCC
Confidence            59999999988889999999999999999997643  4567777889999999998864    26789999999999999


Q ss_pred             CccceeeeeCcccHHHHHHHHhcCCCCceEEE
Q psy12355         75 VRKLITHNFKLEEAVEAFKTASKKADDTIKIM  106 (112)
Q Consensus        75 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v  106 (112)
                      +.++++++|+|+|+++||+.+++++. .+|++
T Consensus       340 ~~~~i~~~~~l~~~~~A~~~~~~~~~-~~~vi  370 (371)
T cd08281         340 VDKLLTHRLPLDEINEGFDRLAAGEA-VRQVI  370 (371)
T ss_pred             chhheeeeecHHHHHHHHHHHhCCCc-eeeee
Confidence            88899999999999999999999884 35554

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=99.75  E-value=2.7e-17  Score=111.03  Aligned_cols=106  Identities=17%  Similarity=0.384  Sum_probs=91.8

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGKCP   74 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~~~   74 (112)
                      +|+++||+|++.++..++++++++|+++.+|....  ...+++..++.+++++.+++..    ..+++++++++++|+++
T Consensus       246 ~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~l~  325 (358)
T TIGR03451       246 ADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLP  325 (358)
T ss_pred             CCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCceeeccHHHHhhcCCEEEEeecCCCCcHHHHHHHHHHHHcCCCC
Confidence            58999999988889999999999999999997654  3567777888899999988642    26789999999999999


Q ss_pred             CccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         75 VRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        75 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      +.++++++||++|+.+||+.+.+++.  .|+++.
T Consensus       326 ~~~~i~~~~~l~~~~~A~~~~~~~~~--~k~~~~  357 (358)
T TIGR03451       326 LDAFVTERIGLDDVEEAFDKMHAGDV--LRSVVE  357 (358)
T ss_pred             chheEEEEecHHHHHHHHHHHhCCCc--ceeEEe
Confidence            88889999999999999999998875  688764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.74  E-value=3.1e-17  Score=112.59  Aligned_cols=108  Identities=14%  Similarity=0.069  Sum_probs=93.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC-C--ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP-Q--MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVR   76 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~-~--~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~   76 (112)
                      +|+++|++|.+.++..++++++++|+++.++... .  +.++++..++.+++++.|++... .+++++++++++|++++.
T Consensus       258 ~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~li~~g~i~~~  337 (410)
T cd08238         258 FDDVFVFVPVPELVEEADTLLAPDGCLNFFAGPVDKNFSAPLNFYNVHYNNTHYVGTSGGNTDDMKEAIDLMAAGKLNPA  337 (410)
T ss_pred             CCEEEEcCCCHHHHHHHHHHhccCCeEEEEEccCCCCccccccHHHhhhcCcEEEEeCCCCHHHHHHHHHHHHcCCCchh
Confidence            5899999998889999999999999988775432 2  35677778899999999988654 789999999999999998


Q ss_pred             cceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         77 KLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        77 ~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      ++++++|||+|+++||+.+. ++ ..+|+|+.++
T Consensus       338 ~~it~~~~l~~~~~A~~~~~-~~-~~gKvvl~~~  369 (410)
T cd08238         338 RMVTHIGGLNAAAETTLNLP-GI-PGGKKLIYTQ  369 (410)
T ss_pred             hcEEEEecHHHHHHHHHHhh-cc-CCceEEEECC
Confidence            89999999999999999999 55 3499999863

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=99.74  E-value=5.5e-17  Score=109.63  Aligned_cols=107  Identities=16%  Similarity=0.170  Sum_probs=92.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI   79 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~   79 (112)
                      +|++|||+|.+.++..++++++++|+++.+|......+++...++.+++++.|++... .++.++++++++|+++  +++
T Consensus       245 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~l~--~~i  322 (357)
T PLN02514        245 LDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVTPMLMLGRKVITGSFIGSMKETEEMLEFCKEKGLT--SMI  322 (357)
T ss_pred             CcEEEECCCchHHHHHHHHHhccCCEEEEECCCCCCCcccHHHHhhCCcEEEEEecCCHHHHHHHHHHHHhCCCc--CcE
Confidence            5999999998788999999999999999999876556777788889999999998755 6899999999999764  455


Q ss_pred             eeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         80 THNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                       ++|||+|+.+||+.+.+++. .+|+++.++.
T Consensus       323 -~~~~l~~~~~A~~~~~~~~~-~gk~v~~~~~  352 (357)
T PLN02514        323 -EVVKMDYVNTAFERLEKNDV-RYRFVVDVAG  352 (357)
T ss_pred             -EEEcHHHHHHHHHHHHcCCC-ceeEEEEccc
Confidence             57999999999999999874 4899998754

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=99.73  E-value=6.1e-17  Score=109.55  Aligned_cols=105  Identities=15%  Similarity=0.210  Sum_probs=90.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI   79 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~   79 (112)
                      +|++||++|.+.++.+++++++++|+++.+|....+.++++..++.++..+.|++.+. .+++++++++.+|++++.  +
T Consensus       248 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~li~~g~i~~~--~  325 (360)
T PLN02586        248 MDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEKPLELPIFPLVLGRKLVGGSDIGGIKETQEMLDFCAKHNITAD--I  325 (360)
T ss_pred             CCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCCCCCCccCHHHHHhCCeEEEEcCcCCHHHHHHHHHHHHhCCCCCc--E
Confidence            5999999998778999999999999999999765566777777888898888887654 689999999999998753  4


Q ss_pred             eeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         80 THNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                       ++|+|+|+++||+.+.+++. .+|+|+.+
T Consensus       326 -~~~~l~~~~~A~~~~~~~~~-~gkvvi~~  353 (360)
T PLN02586        326 -ELIRMDEINTAMERLAKSDV-RYRFVIDV  353 (360)
T ss_pred             -EEEeHHHHHHHHHHHHcCCC-cEEEEEEc
Confidence             57999999999999999874 48999876

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=99.73  E-value=8.4e-17  Score=108.23  Aligned_cols=108  Identities=21%  Similarity=0.357  Sum_probs=95.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI   79 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~   79 (112)
                      +|+++||+|.+.++..++++++++|+++.+|....+.++++..+..+++++.+++.+. ++++++++++.+|++++.+++
T Consensus       242 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~l~~~~~i  321 (351)
T cd08233         242 VDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWEKPISFNPNDLVLKEKTLTGSICYTREDFEEVIDLLASGKIDAEPLI  321 (351)
T ss_pred             CCEEEECCCCHHHHHHHHHhccCCCEEEEEccCCCCCccCHHHHHhhCcEEEEEeccCcchHHHHHHHHHcCCCChHHhe
Confidence            5899999988778999999999999999999766666778888889999999998664 889999999999999888888


Q ss_pred             eeeeCcccH-HHHHHHHhcCCCCceEEEEe
Q psy12355         80 THNFKLEEA-VEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        80 ~~~~~l~~~-~~a~~~~~~~~~~~~k~v~~  108 (112)
                      +++|+++|+ ++||+.+.+++...+|+||.
T Consensus       322 ~~~~~l~e~~~~a~~~~~~~~~~~~k~v~~  351 (351)
T cd08233         322 TSRIPLEDIVEKGFEELINDKEQHVKILVS  351 (351)
T ss_pred             EEEecHHHHHHHHHHHHHhCCCCceEEEeC
Confidence            999999996 79999999988435999873

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=99.71  E-value=1.4e-16  Score=107.45  Aligned_cols=106  Identities=20%  Similarity=0.235  Sum_probs=88.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccC----hhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVP----LVNACAKEIDILSCFRYV-NDYPDALEMVASGKC   73 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~----~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~   73 (112)
                      +|++|||+|.+..+..++++++++|+++.+|...+  ..+++    ...++.+++++.|++... +++.++++++.++.+
T Consensus       239 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~~~~  318 (355)
T cd08230         239 FDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSVNANKRHFEQAVEDLAQWKY  318 (355)
T ss_pred             CCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEEecCCchhhHHHHHHHHHhccc
Confidence            69999999988889999999999999999997654  44555    346788999999987654 789999999998872


Q ss_pred             ----CCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         74 ----PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        74 ----~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                          +++++++++|+++|+++||+.++++.   .|+++.+
T Consensus       319 ~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~---~K~v~~~  355 (355)
T cd08230         319 RWPGVLERLITRRVPLEEFAEALTEKPDGE---IKVVIEW  355 (355)
T ss_pred             ccccchHHheeeeecHHHHHHHHHhcccCC---eEEEeeC
Confidence                35678899999999999999987543   7999875

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=99.71  E-value=1.5e-16  Score=108.79  Aligned_cols=108  Identities=19%  Similarity=0.210  Sum_probs=85.4

Q ss_pred             CcEEEEcccCh--------------HHHHHHHhhccCCcEEEEEecCC-C-cc-----------ccChhhhhhcCeeEEe
Q psy12355          1 MMLYLDPLGTE--------------NCLTLGINVTKMGGKLMLVGMGP-Q-MV-----------SVPLVNACAKEIDILS   53 (112)
Q Consensus         1 ~D~v~d~~g~~--------------~~~~~~~~~l~~~G~iv~~g~~~-~-~~-----------~~~~~~~~~~~~~l~g   53 (112)
                      +|++|||+|.+              .++.+++++++++|+++.+|.+. + ..           ++....++.+++++.|
T Consensus       255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g  334 (393)
T TIGR02819       255 VDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLYVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHT  334 (393)
T ss_pred             CcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeecCCcccccccccccccccccchHHhhccCceEEe
Confidence            58999999986              47999999999999999999863 2 21           2223445567777777


Q ss_pred             EeccC-CCHHHHHHHHHcCCCCCcccee-eeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         54 CFRYV-NDYPDALEMVASGKCPVRKLIT-HNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        54 ~~~~~-~~~~~~~~~~~~g~~~~~~~~~-~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      ..... ..+.++++++.+|++++.++++ ++|||+|+++||+.+.+++.  .|+++.++
T Consensus       335 ~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~~~~~~~--~Kvvi~~~  391 (393)
T TIGR02819       335 GQTPVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAEFDAGAA--KKFVIDPH  391 (393)
T ss_pred             ccCChhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHHHhhCCc--eEEEEeCC
Confidence            54333 3347899999999999988887 68999999999999988764  99999874

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PLN02740 Alcohol dehydrogenase-like

Probab=99.70  E-value=3e-16  Score=106.83  Aligned_cols=105  Identities=18%  Similarity=0.266  Sum_probs=87.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCCc--cccChhhhhhcCeeEEeEeccC----CCHHHHHHHHHcCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQM--VSVPLVNACAKEIDILSCFRYV----NDYPDALEMVASGKC   73 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~--~~~~~~~~~~~~~~l~g~~~~~----~~~~~~~~~~~~g~~   73 (112)
                      +|++|||+|.+.++..++.+++++ |+++.+|.+..+  ++++...+ .+++++.|++...    .+++++++++.+|++
T Consensus       269 ~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i  347 (381)
T PLN02740        269 VDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMEL-FDGRSITGSVFGDFKGKSQLPNLAKQCMQGVV  347 (381)
T ss_pred             CCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceecccHHHH-hcCCeEEEEecCCCCcHHHHHHHHHHHHcCCC
Confidence            699999999988899999999997 999999986543  33443333 4788999887532    468999999999999


Q ss_pred             CCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      ++.++++++|+|+|+++|++.+.+++.  .|++|.
T Consensus       348 ~~~~~it~~~~l~e~~~A~~~~~~~~~--~k~~~~  380 (381)
T PLN02740        348 NLDGFITHELPFEKINEAFQLLEDGKA--LRCLLH  380 (381)
T ss_pred             ChHHheeEEecHHHHHHHHHHHHCCCc--eeEEEe
Confidence            988899999999999999999998874  899885

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=99.68  E-value=9.3e-16  Score=102.70  Aligned_cols=103  Identities=17%  Similarity=0.119  Sum_probs=88.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|++++++|.+.++..++++++++|+++.+|...+ ..++++..++.+++++.+++... .++.++++++.+|+++   +
T Consensus       224 ~d~~i~~~~~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~---~  300 (329)
T TIGR02822       224 LDAAILFAPAGGLVPPALEALDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSVTSNTRADAREFLELAAQHGVR---V  300 (329)
T ss_pred             ceEEEECCCcHHHHHHHHHhhCCCcEEEEEeccCccCCCCCHHHHhhCCcEEEEeecCCHHHHHHHHHHHHhCCCe---e
Confidence            47889988888899999999999999999997543 34567777888999999988654 6789999999999885   3


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      ++++|+|+|+++||+.+.+++ ..+|+|+
T Consensus       301 i~~~~~l~~~~~A~~~~~~~~-~~Gkvvl  328 (329)
T TIGR02822       301 TTHTYPLSEADRALRDLKAGR-FDGAAVL  328 (329)
T ss_pred             EEEEEeHHHHHHHHHHHHcCC-CceEEEe
Confidence            678999999999999999988 4599887

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK10083 putative oxidoreductase; Provisional

Probab=99.66  E-value=3.1e-15  Score=100.08  Aligned_cols=111  Identities=19%  Similarity=0.340  Sum_probs=91.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCcccee
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLIT   80 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~~~   80 (112)
                      +|++|||+|.+.++..++++++++|+++.+|....+..++...+..+++++.+.......++++++++.+|++++.++++
T Consensus       229 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~  308 (339)
T PRK10083        229 PTLIIDAACHPSILEEAVTLASPAARIVLMGFSSEPSEIVQQGITGKELSIFSSRLNANKFPVVIDWLSKGLIDPEKLIT  308 (339)
T ss_pred             CCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCceecHHHHhhcceEEEEEecChhhHHHHHHHHHcCCCChHHhee
Confidence            47999999987789999999999999999997654444455555678888888765557899999999999988766678


Q ss_pred             eeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         81 HNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        81 ~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      +.|+++++++|++.+.+++...+|+++.+.+
T Consensus       309 ~~~~l~~~~~a~~~~~~~~~~~~kvvv~~~~  339 (339)
T PRK10083        309 HTFDFQHVADAIELFEKDQRHCCKVLLTFAE  339 (339)
T ss_pred             eeecHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence            8999999999999998655345999998764

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=99.65  E-value=3.1e-15  Score=101.49  Aligned_cols=106  Identities=18%  Similarity=0.297  Sum_probs=85.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCC--ccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGKC   73 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~~   73 (112)
                      +|++|||+|++.++.+++++++++ |+++.+|.+..  +.+++...++. +..+.|++..    ..++.++++++.+|++
T Consensus       256 ~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~g~i  334 (368)
T TIGR02818       256 VDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLVT-GRVWRGSAFGGVKGRTELPGIVEQYMKGEI  334 (368)
T ss_pred             CCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcccccHHHHhc-cceEEEeeccCCCcHHHHHHHHHHHHCCCC
Confidence            589999999888899999999996 99999997642  34444444443 4456776542    2578999999999999


Q ss_pred             CCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ++.++++++|||+|+++||+.+++++.  .|+++.+
T Consensus       335 ~~~~~it~~~~l~~~~~A~~~~~~~~~--~k~~v~~  368 (368)
T TIGR02818       335 ALDDFVTHTMPLEDINEAFDLMHEGKS--IRTVIHY  368 (368)
T ss_pred             CchhheeEEecHHHHHHHHHHHhCCCc--eeEEeeC
Confidence            988899999999999999999988764  8999864

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=99.65  E-value=2.4e-15  Score=101.94  Aligned_cols=104  Identities=17%  Similarity=0.246  Sum_probs=87.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCC--ccccChhhhhhcCeeEEeEeccC----CCHHHHHHHHHcCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRYV----NDYPDALEMVASGKC   73 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~~----~~~~~~~~~~~~g~~   73 (112)
                      +|+++||+|.+..+..++++++++ |+++.+|....  .++++...+ .+++++.|++...    .+++++++++.+|++
T Consensus       258 ~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~  336 (369)
T cd08301         258 VDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPMNL-LNGRTLKGTLFGGYKPKTDLPNLVEKYMKKEL  336 (369)
T ss_pred             CCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCHHHH-hcCCeEEEEecCCCChHHHHHHHHHHHHcCCC
Confidence            589999999888899999999996 99999997653  344454444 4789999987532    478899999999999


Q ss_pred             CCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      ++.++++++|||+|+++||+.+.+++.  .|+++
T Consensus       337 ~~~~~i~~~~~l~~~~~A~~~~~~~~~--~k~~~  368 (369)
T cd08301         337 ELEKFITHELPFSEINKAFDLLLKGEC--LRCIL  368 (369)
T ss_pred             CcHHheeeeecHHHHHHHHHHHHCCCc--eeEEe
Confidence            888889999999999999999999885  79887

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=99.65  E-value=3e-15  Score=101.43  Aligned_cols=105  Identities=21%  Similarity=0.276  Sum_probs=87.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC----CCHHHHHHHHHcCCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV----NDYPDALEMVASGKCP   74 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~----~~~~~~~~~~~~g~~~   74 (112)
                      +|++|||+|.+..+..++++++++ |+++.+|...+ ..+++...++. ++++.|++...    .++.++++++++++++
T Consensus       255 ~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~  333 (365)
T cd08277         255 VDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAELSIRPFQLIL-GRTWKGSFFGGFKSRSDVPKLVSKYMNKKFD  333 (365)
T ss_pred             CCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCccccccCHhHHhh-CCEEEeeecCCCChHHHHHHHHHHHHCCCcC
Confidence            589999999888889999999986 99999997653 44566656654 78888887542    4689999999999998


Q ss_pred             CccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         75 VRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        75 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      +.++++++|+|+|+++||+.+++++.  .|++++
T Consensus       334 ~~~~i~~~~~l~~~~~A~~~~~~~~~--~k~~i~  365 (365)
T cd08277         334 LDELITHVLPFEEINKGFDLMKSGEC--IRTVIT  365 (365)
T ss_pred             hhHheeeEEchhhHHHHHHHHHCCCC--ceEeeC
Confidence            88899999999999999999988873  898874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.65  E-value=1.8e-15  Score=101.96  Aligned_cols=107  Identities=19%  Similarity=0.196  Sum_probs=87.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-cc-----ccChhhhhhcCeeEEeEeccC------CCHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MV-----SVPLVNACAKEIDILSCFRYV------NDYPDALEMV   68 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~-----~~~~~~~~~~~~~l~g~~~~~------~~~~~~~~~~   68 (112)
                      +|+++||+|. .++..++++++++|+++.+|.... ..     .++...++.+++++.|++.+.      +.++++++++
T Consensus       229 vD~v~d~vG~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~  307 (348)
T PLN03154        229 IDIYFDNVGG-DMLDAALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYY  307 (348)
T ss_pred             cEEEEECCCH-HHHHHHHHHhccCCEEEEECccccCCCCCCCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHH
Confidence            5899999986 578999999999999999997543 22     135566888999999987532      4578899999


Q ss_pred             HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      ++|++++  .+..+|+|+++++|++.+++++. .||+|+.+.+
T Consensus       308 ~~G~l~~--~~~~~~~L~~~~~A~~~l~~g~~-~GKvVl~~~~  347 (348)
T PLN03154        308 KQGKIVY--IEDMSEGLESAPAALVGLFSGKN-VGKQVIRVAK  347 (348)
T ss_pred             HCCCccC--ceecccCHHHHHHHHHHHHcCCC-CceEEEEecC
Confidence            9998865  46678999999999999999984 5999999865

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=99.62  E-value=1e-14  Score=98.93  Aligned_cols=105  Identities=18%  Similarity=0.264  Sum_probs=83.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCC--ccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGKC   73 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~~   73 (112)
                      +|+++||+|++.++..++++++++ |+++.+|....  ...++...+. ++..+.++...    ..+++++++++.+|++
T Consensus       257 ~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l  335 (368)
T cd08300         257 VDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLV-TGRVWKGTAFGGWKSRSQVPKLVEDYMKGKI  335 (368)
T ss_pred             CcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCccccCHHHHh-hcCeEEEEEecccCcHHHHHHHHHHHHcCCC
Confidence            599999999888899999999997 99999997642  3333443343 33456665432    3678999999999999


Q ss_pred             CCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      ++.++++++|+|+|+++||+.+.+++.  .|+++.
T Consensus       336 ~~~~~i~~~~~le~~~~A~~~~~~~~~--~k~~~~  368 (368)
T cd08300         336 KVDEFITHTMPLDEINEAFDLMHAGKS--IRTVVK  368 (368)
T ss_pred             ChhhceeeeEcHHHHHHHHHHHhCCCC--ceeeeC
Confidence            988899999999999999999988874  898873

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>KOG0023|consensus

Probab=99.62  E-value=5.6e-15  Score=96.92  Aligned_cols=105  Identities=21%  Similarity=0.246  Sum_probs=93.3

Q ss_pred             cEEEEccc--ChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEecc-CCCHHHHHHHHHcCCCCCccc
Q psy12355          2 MLYLDPLG--TENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY-VNDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         2 D~v~d~~g--~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~g~~~~~~~   78 (112)
                      |.++|++.  +...+..+++++|++|++|.+|++..+..++...++.+.++|.|+... ..+.+|++++.++|.++..  
T Consensus       248 dg~~~~v~~~a~~~~~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~~--  325 (360)
T KOG0023|consen  248 DGGIDTVSNLAEHALEPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVGSRKETQEALDFVARGLIKSP--  325 (360)
T ss_pred             cCcceeeeeccccchHHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEEEeeccccHHHHHHHHHHHHcCCCcCc--
Confidence            56777776  667899999999999999999999988999999999999999999864 4999999999999988663  


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      + +..+++++++||+++.+++.+ .|.|++++
T Consensus       326 I-E~v~~~~v~~a~erm~kgdV~-yRfVvD~s  355 (360)
T KOG0023|consen  326 I-ELVKLSEVNEAYERMEKGDVR-YRFVVDVS  355 (360)
T ss_pred             e-EEEehhHHHHHHHHHHhcCee-EEEEEEcc
Confidence            4 679999999999999999975 88898875

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=99.61  E-value=1.2e-14  Score=98.19  Aligned_cols=107  Identities=21%  Similarity=0.389  Sum_probs=90.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcC--CCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASG--KCPV   75 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g--~~~~   75 (112)
                      +|+++||+|....+..++++++++|+++.+|....  ...++...++.+++++.+++.+. ++++++++++.++  .+++
T Consensus       250 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (361)
T cd08231         250 ADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVHNYDPSHLYRAVRFLERTQDRFPF  329 (361)
T ss_pred             CcEEEECCCChHHHHHHHHHhccCCEEEEEcCCCCCCccccCHHHHhhcccEEEEcccCCchhHHHHHHHHHhccCcCCc
Confidence            58999999887788999999999999999996543  34556566789999999988654 7899999999998  6677


Q ss_pred             ccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         76 RKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        76 ~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      .++++++|+++|+++|++.+.++. . +|++|.+
T Consensus       330 ~~~i~~~~~l~~~~~a~~~~~~~~-~-~k~vi~~  361 (361)
T cd08231         330 AELVTHRYPLEDINEALELAESGT-A-LKVVIDP  361 (361)
T ss_pred             hhheeeeeeHHHHHHHHHHHHcCC-c-eEEEeCC
Confidence            778899999999999999998877 3 8999864

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=99.61  E-value=2.9e-16  Score=91.96  Aligned_cols=98  Identities=24%  Similarity=0.320  Sum_probs=65.1

Q ss_pred             CcEEEEccc--ChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhh--cCeeEEeEec---c--C-CCHHHHHHHHHc
Q psy12355          1 MMLYLDPLG--TENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACA--KEIDILSCFR---Y--V-NDYPDALEMVAS   70 (112)
Q Consensus         1 ~D~v~d~~g--~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~--~~~~l~g~~~---~--~-~~~~~~~~~~~~   70 (112)
                      +|+||||+|  ....+..+.++| ++|+++.+|.     .........  ...+......   +  . +.++++++++++
T Consensus        20 ~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~   93 (127)
T PF13602_consen   20 VDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGG-----DLPSFARRLKGRSIRYSFLFSVDPNAIRAEALEELAELVAE   93 (127)
T ss_dssp             EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-S-----HHHHHHHHHHCHHCEEECCC-H--HHHHHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCccHHHHHHHHHHC-CCCEEEEECC-----cccchhhhhcccceEEEEEEecCCCchHHHHHHHHHHHHHC
Confidence            699999998  545446677888 9999999983     111111111  2222222221   1  2 459999999999


Q ss_pred             CCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         71 GKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        71 g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      |++++  .+.++|||+++.+|++.+++++. .||+||
T Consensus        94 G~l~~--~i~~~f~l~~~~~A~~~l~~~~~-~GKvVl  127 (127)
T PF13602_consen   94 GKLKP--PIDRVFPLEEAPEAHERLESGHA-RGKVVL  127 (127)
T ss_dssp             TSS-----EEEEEEGGGHHHHHHHHHCT---SSEEEE
T ss_pred             CCeEE--eeccEECHHHHHHHHHHHHhCCC-CCeEeC
Confidence            98865  58889999999999999999995 499986

>KOG0022|consensus

Probab=99.59  E-value=2.2e-14  Score=94.05  Aligned_cols=105  Identities=16%  Similarity=0.248  Sum_probs=89.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCC--ccccChhhhhhcCeeEEeEec----cCCCHHHHHHHHHcCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFR----YVNDYPDALEMVASGKC   73 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~----~~~~~~~~~~~~~~g~~   73 (112)
                      +|+.|||+|+..++.+++.+.++| |+-+.+|....  .+++++++++. +.++.|+.-    ...+++.+.+...++++
T Consensus       263 vDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~-GR~~~Gs~FGG~K~~~~iP~lV~~y~~~~l  341 (375)
T KOG0022|consen  263 VDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVT-GRTWKGSAFGGFKSKSDIPKLVKDYMKKKL  341 (375)
T ss_pred             ceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhcc-ccEEEEEecccccchhhhhHHHHHHHhCcc
Confidence            689999999999999999999999 99999998775  45566666654 555666542    23789999999999999


Q ss_pred             CCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      +++++|||++||+++++||+.|.+|+.  .|.|+.
T Consensus       342 ~ld~~ITh~l~f~~In~AF~ll~~Gks--iR~vl~  374 (375)
T KOG0022|consen  342 NLDEFITHELPFEEINKAFDLLHEGKS--IRCVLW  374 (375)
T ss_pred             chhhhhhcccCHHHHHHHHHHHhCCce--EEEEEe
Confidence            999999999999999999999999985  788775

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.56  E-value=8.7e-14  Score=92.44  Aligned_cols=105  Identities=25%  Similarity=0.380  Sum_probs=88.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCcccee
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLIT   80 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~~~   80 (112)
                      +|+++||+|....+..++++++++|+++..|.......+++..+..++.++.+.+..  .++++++++.++++++.++++
T Consensus       215 ~d~vid~~g~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~l~~~~~~~  292 (319)
T cd08242         215 FDVVVEATGSPSGLELALRLVRPRGTVVLKSTYAGPASFDLTKAVVNEITLVGSRCG--PFAPALRLLRKGLVDVDPLIT  292 (319)
T ss_pred             CCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCccCHHHheecceEEEEEecc--cHHHHHHHHHcCCCChhhceE
Confidence            689999998877889999999999999998765555666777788899999887643  489999999999997777788


Q ss_pred             eeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         81 HNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        81 ~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +.|+++++++|++.+..++.  +|+|+.+
T Consensus       293 ~~~~l~~~~~a~~~~~~~~~--~k~vi~~  319 (319)
T cd08242         293 AVYPLEEALEAFERAAEPGA--LKVLLRP  319 (319)
T ss_pred             EEEeHHHHHHHHHHHhcCCc--eEEEeCC
Confidence            99999999999999987663  8998864

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.56  E-value=1.1e-14  Score=95.54  Aligned_cols=88  Identities=17%  Similarity=0.279  Sum_probs=77.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC--CccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHc--CCCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP--QMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVAS--GKCPV   75 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~--~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~--g~~~~   75 (112)
                      +|++|||+|.+.++..++++++++|+++.+|...  .+.++++..++.+++++.|++.+. .+++++++++.+  +++++
T Consensus       188 ~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~i~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~~~~~  267 (280)
T TIGR03366       188 VDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQVVRRWLTIRGVHNYEPRHLDQAVRFLAANGQRFPF  267 (280)
T ss_pred             CCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCceeeCHHHHHhCCcEEEecCCCCHHHHHHHHHHHHhhCCCCCH
Confidence            5999999999888999999999999999999653  356788888999999999998765 789999999998  46778


Q ss_pred             ccceeeeeCcccH
Q psy12355         76 RKLITHNFKLEEA   88 (112)
Q Consensus        76 ~~~~~~~~~l~~~   88 (112)
                      +++++++|||+|+
T Consensus       268 ~~~it~~~~l~~~  280 (280)
T TIGR03366       268 EELVGKPFPLADV  280 (280)
T ss_pred             HHHhhcccccccC
Confidence            8899999999874

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.54  E-value=2e-13  Score=92.44  Aligned_cols=107  Identities=39%  Similarity=0.710  Sum_probs=89.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCcccee
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLIT   80 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~~~   80 (112)
                      +|+++||+|.+.++..++++++++|+++.+|.......++...+..+++++.+++.+...++++++++.++++++.++++
T Consensus       255 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  334 (364)
T PLN02702        255 IDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHNEMTVPLTPAAAREVDVVGVFRYRNTWPLCLEFLRSGKIDVKPLIT  334 (364)
T ss_pred             CCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCCCcccHHHHHhCccEEEEeccChHHHHHHHHHHHcCCCCchHheE
Confidence            58999999977889999999999999999996544444556678889999999886667889999999999987666677


Q ss_pred             eeeCc--ccHHHHHHHHhcCCCCceEEEEe
Q psy12355         81 HNFKL--EEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        81 ~~~~l--~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      ++|++  +++++|++.+.+++ ..+|+++.
T Consensus       335 ~~~~l~~~~~~~a~~~~~~~~-~~~kvv~~  363 (364)
T PLN02702        335 HRFGFSQKEVEEAFETSARGG-NAIKVMFN  363 (364)
T ss_pred             EEeccChHHHHHHHHHHhcCC-CceEEEEe
Confidence            88665  79999999998876 45899885

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.54  E-value=2e-13  Score=91.60  Aligned_cols=109  Identities=29%  Similarity=0.417  Sum_probs=90.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCcccee
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLIT   80 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~~~   80 (112)
                      +|+++||+|....+..++++++++|+++.+|......++++..++.+++++.+.......+.++.++++++.+++.++++
T Consensus       236 ~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  315 (345)
T cd08286         236 VDVVIEAVGIPATFELCQELVAPGGHIANVGVHGKPVDLHLEKLWIKNITITTGLVDTNTTPMLLKLVSSGKLDPSKLVT  315 (345)
T ss_pred             CCEEEECCCCHHHHHHHHHhccCCcEEEEecccCCCCCcCHHHHhhcCcEEEeecCchhhHHHHHHHHHcCCCChHHcEE
Confidence            58999999887788999999999999999997655566677667889999988654446788899999999988776678


Q ss_pred             eeeCcccHHHHHHHHhcCC-CCceEEEEee
Q psy12355         81 HNFKLEEAVEAFKTASKKA-DDTIKIMIHC  109 (112)
Q Consensus        81 ~~~~l~~~~~a~~~~~~~~-~~~~k~v~~~  109 (112)
                      ++|+++++++|++.+.... ++..|++|.+
T Consensus       316 ~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~  345 (345)
T cd08286         316 HRFKLSEIEKAYDTFSAAAKHKALKVIIDF  345 (345)
T ss_pred             eEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence            8999999999999998752 2458999864

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.52  E-value=3.7e-13  Score=90.66  Aligned_cols=109  Identities=19%  Similarity=0.199  Sum_probs=85.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCc--cccCh--hhhhhcCeeEEeEecc--CCCHHHHHHHHHcCCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQM--VSVPL--VNACAKEIDILSCFRY--VNDYPDALEMVASGKCP   74 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~--~~~~~--~~~~~~~~~l~g~~~~--~~~~~~~~~~~~~g~~~   74 (112)
                      +|+++||+|.+..+..++++++++|+++.+|.....  ..++.  .....+..++.+.+..  .+.++++++++.+|+++
T Consensus       236 ~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~i~  315 (351)
T cd08285         236 VDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLCPGGRLRMERLASLIEYGRVD  315 (351)
T ss_pred             CcEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCceeecChhhhhhhccccEEEEeecCCccccHHHHHHHHHcCCCC
Confidence            589999999887899999999999999999976542  33432  2234566677776643  37899999999999988


Q ss_pred             Cccce-eeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         75 VRKLI-THNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        75 ~~~~~-~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +..++ .+.++++++++|++.+.+++....|+++.+
T Consensus       316 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~  351 (351)
T cd08285         316 PSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF  351 (351)
T ss_pred             hhhceeccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence            75444 445899999999999998875569999864

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.51  E-value=4.9e-13  Score=89.51  Aligned_cols=108  Identities=32%  Similarity=0.564  Sum_probs=89.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCcccee
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLIT   80 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~~~   80 (112)
                      +|+++||+|....+..++++|+++|+++.+|....+...++..++.+++++.+.......++++++++.+|.+++.+.++
T Consensus       232 vd~vld~~g~~~~~~~~~~~L~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  311 (339)
T cd08232         232 FDVVFEASGAPAALASALRVVRPGGTVVQVGMLGGPVPLPLNALVAKELDLRGSFRFDDEFAEAVRLLAAGRIDVRPLIT  311 (339)
T ss_pred             ccEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCccCcHHHHhhcceEEEEEecCHHHHHHHHHHHHcCCCCchhhee
Confidence            58999999877778999999999999999986544444455556778888888776567889999999999887766677


Q ss_pred             eeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         81 HNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        81 ~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ++|+++++++|++.+.++. ..+|+|+.+
T Consensus       312 ~~~~~~~~~~a~~~~~~~~-~~gkvvv~~  339 (339)
T cd08232         312 AVFPLEEAAEAFALAADRT-RSVKVQLSF  339 (339)
T ss_pred             EEecHHHHHHHHHHHHhCC-CceeEEEeC
Confidence            8899999999999998776 459999864

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.51  E-value=2.7e-13  Score=90.39  Aligned_cols=103  Identities=16%  Similarity=0.149  Sum_probs=82.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-cc-ccChhhhhhcCeeEEeEeccC-------CCHHHHHHHHHcC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MV-SVPLVNACAKEIDILSCFRYV-------NDYPDALEMVASG   71 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~-~~~~~~~~~~~~~l~g~~~~~-------~~~~~~~~~~~~g   71 (112)
                      +|+++||+|... ...++++++++|+++.+|.... .. .++...++.+++++.+++...       +.+++++++++ +
T Consensus       213 ~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  290 (324)
T cd08291         213 ATIFFDAVGGGL-TGQILLAMPYGSTLYVYGYLSGKLDEPIDPVDLIFKNKSIEGFWLTTWLQKLGPEVVKKLKKLVK-T  290 (324)
T ss_pred             CcEEEECCCcHH-HHHHHHhhCCCCEEEEEEecCCCCcccCCHHHHhhcCcEEEEEEHHHhhcccCHHHHHHHHHHHh-C
Confidence            589999998765 5778999999999999996543 23 366677888999999987432       35778888887 7


Q ss_pred             CCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         72 KCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        72 ~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      .+  .++++++|+|+|+.+||+.+.+++ ..||+++.
T Consensus       291 ~~--~~~i~~~~~l~~~~~a~~~~~~~~-~~Gkvv~~  324 (324)
T cd08291         291 EL--KTTFASRYPLALTLEAIAFYSKNM-STGKKLLI  324 (324)
T ss_pred             cc--ccceeeEEcHHHHHHHHHHHHhCC-CCCeEEeC
Confidence            55  457889999999999999999987 45998873

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.50  E-value=4.9e-13  Score=89.52  Aligned_cols=104  Identities=18%  Similarity=0.213  Sum_probs=87.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI   79 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~   79 (112)
                      +|+++|++|.+..+..++++++++|+++.+|......+++...++.+++++.++.... .++.++++++.++++++  ++
T Consensus       229 ~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~--~v  306 (333)
T cd08296         229 AKLILATAPNAKAISALVGGLAPRGKLLILGAAGEPVAVSPLQLIMGRKSIHGWPSGTALDSEDTLKFSALHGVRP--MV  306 (333)
T ss_pred             CCEEEECCCchHHHHHHHHHcccCCEEEEEecCCCCCCcCHHHHhhcccEEEEeCcCCHHHHHHHHHHHHhCCCCc--eE
Confidence            5899999987788999999999999999999766556677777889999999987544 77889999999887754  45


Q ss_pred             eeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         80 THNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                       +.|+++++.+|++.+++++ ..+|+|++
T Consensus       307 -~~~~~~~~~~a~~~~~~~~-~~gk~v~~  333 (333)
T cd08296         307 -ETFPLEKANEAYDRMMSGK-ARFRVVLT  333 (333)
T ss_pred             -EEEEHHHHHHHHHHHHCCC-CceeEEeC
Confidence             5799999999999999887 45898874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.49  E-value=5.7e-13  Score=90.98  Aligned_cols=109  Identities=28%  Similarity=0.408  Sum_probs=88.9

Q ss_pred             CcEEEEcccC---------------------hHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC
Q psy12355          1 MMLYLDPLGT---------------------ENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV   58 (112)
Q Consensus         1 ~D~v~d~~g~---------------------~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~   58 (112)
                      +|+++||+|+                     ...+..++++++++|+++.+|.... ...++...++.+++++.+.....
T Consensus       255 ~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~  334 (386)
T cd08283         255 PDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGVYGGTVNKFPIGAAMNKGLTLRMGQTHV  334 (386)
T ss_pred             CCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcCCCCCcCccCHHHHHhCCcEEEeccCCc
Confidence            5899999975                     2468889999999999999997654 34456556778899988876443


Q ss_pred             -CCHHHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         59 -NDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        59 -~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                       +.+.++++++.++++++.+++++.|+++++.+|++.+..+..+.+|+++.+
T Consensus       335 ~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~  386 (386)
T cd08283         335 QRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIKVVLKP  386 (386)
T ss_pred             hHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHHhCCCCeEEEEecC
Confidence             679999999999998876667788999999999999988875568999853

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.48  E-value=5.7e-13  Score=89.34  Aligned_cols=104  Identities=16%  Similarity=0.217  Sum_probs=87.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI   79 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~   79 (112)
                      +|+++||+|....+.+++++++++|+++.+|.......+++..++.+++++.+++... +.++++++++.++++++  .+
T Consensus       233 ~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~--~~  310 (337)
T cd05283         233 LDLIIDTVSASHDLDPYLSLLKPGGTLVLVGAPEEPLPVPPFPLIFGRKSVAGSLIGGRKETQEMLDFAAEHGIKP--WV  310 (337)
T ss_pred             ceEEEECCCCcchHHHHHHHhcCCCEEEEEeccCCCCccCHHHHhcCceEEEEecccCHHHHHHHHHHHHhCCCcc--ce
Confidence            5899999988766899999999999999999765544667777788999999988655 78999999999998764  34


Q ss_pred             eeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         80 THNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                       +.|+++++++|++.+.+++. .+|+|++
T Consensus       311 -~~~~~~~~~~a~~~~~~~~~-~~k~v~~  337 (337)
T cd05283         311 -EVIPMDGINEALERLEKGDV-RYRFVLD  337 (337)
T ss_pred             -EEEEHHHHHHHHHHHHcCCC-cceEeeC
Confidence             67999999999999999884 4898863

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.48  E-value=7.2e-13  Score=89.21  Aligned_cols=106  Identities=27%  Similarity=0.467  Sum_probs=86.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhh-hhcCeeEEeEeccCCCHHHHHHHHHcCCCCCccce
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNA-CAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLI   79 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~~   79 (112)
                      +|+++|++|.+..+..++++++++|+++.+|.......++...+ ..+++++.++......+.++++++.+|.+++.+++
T Consensus       244 vdvvld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~l~~~~~~  323 (350)
T cd08256         244 CDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFGDPVTVDWSIIGDRKELDVLGSHLGPYCYPIAIDLIASGRLPTDGIV  323 (350)
T ss_pred             CCEEEECCCChHHHHHHHHHhhcCCEEEEEccCCCCCccChhHhhcccccEEEEeccCchhHHHHHHHHHcCCCChhHhe
Confidence            59999999876778999999999999999986554444454443 36778888877655779999999999998876557


Q ss_pred             eeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         80 THNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      ++.|+++++.+|++.+++++ ..+|+++
T Consensus       324 ~~~~~l~~~~~a~~~~~~~~-~~~kvv~  350 (350)
T cd08256         324 THQFPLEDFEEAFELMARGD-DSIKVVL  350 (350)
T ss_pred             EEEeEHHHHHHHHHHHHhCC-CceEEeC
Confidence            78899999999999999887 4588874

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.47  E-value=1.2e-12  Score=87.99  Aligned_cols=107  Identities=48%  Similarity=0.780  Sum_probs=88.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCcccee
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLIT   80 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~~~   80 (112)
                      +|+++||+|....+..++++++++|+++.+|.......+++..+..+++++.+.+.....+.++++++.++.+.+.+.++
T Consensus       235 ~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  314 (343)
T cd05285         235 PDVVIECTGAESCIQTAIYATRPGGTVVLVGMGKPEVTLPLSAASLREIDIRGVFRYANTYPTAIELLASGKVDVKPLIT  314 (343)
T ss_pred             CCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHHHhhCCcEEEEeccChHHHHHHHHHHHcCCCCchHhEE
Confidence            59999999887678999999999999999997654445566667788888888776667889999999999876555567


Q ss_pred             eeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         81 HNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        81 ~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      +.|+++++.+|++.+.++..+.+|+++
T Consensus       315 ~~~~l~~~~~a~~~~~~~~~~~~k~~~  341 (343)
T cd05285         315 HRFPLEDAVEAFETAAKGKKGVIKVVI  341 (343)
T ss_pred             EEEeHHHHHHHHHHHHcCCCCeeEEEE
Confidence            789999999999999887534599987

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.47  E-value=1.1e-12  Score=88.03  Aligned_cols=107  Identities=18%  Similarity=0.331  Sum_probs=89.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI   79 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~   79 (112)
                      +|+++||+|.+..+..++++++++|+++.+|....+..+++...+.+++++.+..... ..++++++++.++.+++.+++
T Consensus       238 ~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (345)
T cd08287         238 ADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHGGVELDVRELFFRNVGLAGGPAPVRRYLPELLDDVLAGRINPGRVF  317 (345)
T ss_pred             CCEEEECCCCHHHHHHHHHhhccCCEEEEecccCCCCccCHHHHHhcceEEEEecCCcHHHHHHHHHHHHcCCCCHHHhE
Confidence            5899999988888999999999999999998765445566656678999998865433 789999999999998876667


Q ss_pred             eeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         80 THNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ++.++++++.+|++.+.++..  .|++|.+
T Consensus       318 ~~~~~l~~~~~a~~~~~~~~~--~k~~~~~  345 (345)
T cd08287         318 DLTLPLDEVAEGYRAMDERRA--IKVLLRP  345 (345)
T ss_pred             EeeecHHHHHHHHHHHhCCCc--eEEEeCC
Confidence            788999999999999887663  7998853

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.47  E-value=1.4e-12  Score=87.42  Aligned_cols=107  Identities=21%  Similarity=0.372  Sum_probs=85.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI   79 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~   79 (112)
                      +|+++||+|+...+..++++++++|+++.+|.......+.......+++++.++..+. +.++++.+++.+|.+++.+++
T Consensus       234 ~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i  313 (341)
T cd08262         234 PAVIFECVGAPGLIQQIIEGAPPGGRIVVVGVCMESDNIEPALAIRKELTLQFSLGYTPEEFADALDALAEGKVDVAPMV  313 (341)
T ss_pred             CCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCCccCHHHHhhcceEEEEEecccHHHHHHHHHHHHcCCCChHHhe
Confidence            5899999987656888999999999999999654332233333456788887766544 678999999999999876667


Q ss_pred             eeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         80 THNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      ++.++++++++|++.+.+++ ..+|+|+.
T Consensus       314 ~~~~~l~~~~~a~~~~~~~~-~~~kvvv~  341 (341)
T cd08262         314 TGTVGLDGVPDAFEALRDPE-HHCKILVD  341 (341)
T ss_pred             EEEeeHHHHHHHHHHHhcCC-CceEEEeC
Confidence            78999999999999999887 45998863

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.46  E-value=1.5e-13  Score=80.67  Aligned_cols=70  Identities=27%  Similarity=0.463  Sum_probs=64.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC-CccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP-QMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVAS   70 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~-~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~   70 (112)
                      +|++|||+|++.+++.++++++++|+++.+|.+. ...+++...++.+++++.|++.+. ++++++++++++
T Consensus        59 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~la~  130 (130)
T PF00107_consen   59 VDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGSPEDFQEALQLLAQ  130 (130)
T ss_dssp             EEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGGHHHHHHHHHHHH-
T ss_pred             ceEEEEecCcHHHHHHHHHHhccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCCHHHHHHHHHHhcC
Confidence            5899999998999999999999999999999988 578899999999999999999877 899999998864

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.44  E-value=2.6e-12  Score=86.21  Aligned_cols=107  Identities=21%  Similarity=0.400  Sum_probs=86.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChh-hhhhcCeeEEeEecc--CCCHHHHHHHHHcCCCCCcc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLV-NACAKEIDILSCFRY--VNDYPDALEMVASGKCPVRK   77 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~-~~~~~~~~l~g~~~~--~~~~~~~~~~~~~g~~~~~~   77 (112)
                      +|+++||+|....+..++++++++|+++.+|......+++.. .++++++++.+.+..  .+.+.++++++.++.+++.+
T Consensus       231 ~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~  310 (340)
T TIGR00692       231 VDVFLEMSGAPKALEQGLQAVTPGGRVSLLGLPPGKVTIDFTNKVIFKGLTIYGITGRHMFETWYTVSRLIQSGKLDLDP  310 (340)
T ss_pred             CCEEEECCCCHHHHHHHHHhhcCCCEEEEEccCCCCcccchhhhhhhcceEEEEEecCCchhhHHHHHHHHHcCCCChHH
Confidence            589999998877889999999999999999976443444444 577788888876532  25678899999999987656


Q ss_pred             ceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         78 LITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        78 ~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ++++.++++++.++++.+.++. . +|+|+++
T Consensus       311 ~~~~~~~l~~~~~a~~~~~~~~-~-gkvvv~~  340 (340)
T TIGR00692       311 IITHKFKFDKFEKGFELMRSGQ-T-GKVILSL  340 (340)
T ss_pred             heeeeeeHHHHHHHHHHHhcCC-C-ceEEEeC
Confidence            6778999999999999998776 4 9999874

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.44  E-value=3.1e-12  Score=85.86  Aligned_cols=107  Identities=15%  Similarity=0.311  Sum_probs=86.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC--CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV--NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~--~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|++|||+|....+..++++++++|+++.+|.......++...+..+++++.++....  ..+.++++++.++ +++.++
T Consensus       233 ~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  311 (341)
T PRK05396        233 FDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGIPPGDMAIDWNKVIFKGLTIKGIYGREMFETWYKMSALLQSG-LDLSPI  311 (341)
T ss_pred             CCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCcccHHHHhhcceEEEEEEccCccchHHHHHHHHHcC-CChhHh
Confidence            5899999998888999999999999999999765545555567788899988876322  5567788999998 545556


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      +.+.++++++.+|++.+.+++  .+|++++|+
T Consensus       312 ~~~~~~l~~~~~a~~~~~~~~--~gk~vv~~~  341 (341)
T PRK05396        312 ITHRFPIDDFQKGFEAMRSGQ--SGKVILDWD  341 (341)
T ss_pred             eEEEEeHHHHHHHHHHHhcCC--CceEEEecC
Confidence            778899999999999998765  399999875

>KOG1197|consensus

Probab=99.44  E-value=3.8e-13  Score=86.24  Aligned_cols=107  Identities=17%  Similarity=0.299  Sum_probs=84.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEe--ccC-------CCHHHHHHHHHc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCF--RYV-------NDYPDALEMVAS   70 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~--~~~-------~~~~~~~~~~~~   70 (112)
                      +|+++|.+|. +++..++.+|++.|.+|.+|...+ .-+++..++..+.+.+.-..  +|-       ....+++.++.+
T Consensus       216 Vd~vyDsvG~-dt~~~sl~~Lk~~G~mVSfG~asgl~~p~~l~~ls~k~l~lvrpsl~gYi~g~~el~~~v~rl~alvns  294 (336)
T KOG1197|consen  216 VDAVYDSVGK-DTFAKSLAALKPMGKMVSFGNASGLIDPIPLNQLSPKALQLVRPSLLGYIDGEVELVSYVARLFALVNS  294 (336)
T ss_pred             ceeeeccccc-hhhHHHHHHhccCceEEEeccccCCCCCeehhhcChhhhhhccHhhhcccCCHHHHHHHHHHHHHHhhc
Confidence            5899999987 669999999999999999998775 34556666666665554332  221       234568888889


Q ss_pred             CCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         71 GKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        71 g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      |.+++.  |.++|||+++.+|++.+++++ ..||+++.+.+
T Consensus       295 g~lk~~--I~~~ypls~vadA~~diesrk-tvGkvlLlp~~  332 (336)
T KOG1197|consen  295 GHLKIH--IDHVYPLSKVADAHADIESRK-TVGKVLLLPGP  332 (336)
T ss_pred             Ccccee--eeeecchHHHHHHHHHHHhhh-ccceEEEeCCc
Confidence            988764  899999999999999999998 46999998765

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=99.44  E-value=2.3e-12  Score=86.40  Aligned_cols=105  Identities=20%  Similarity=0.277  Sum_probs=82.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC-C-ccccChhhhhhcCeeEEeEeccC-------CCHHHHHHHHHcC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP-Q-MVSVPLVNACAKEIDILSCFRYV-------NDYPDALEMVASG   71 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~-~-~~~~~~~~~~~~~~~l~g~~~~~-------~~~~~~~~~~~~g   71 (112)
                      +|+|+|++|. .++..++++++++|+++.+|... . ..+++...+..+.+.+.+.....       +.+.++.+++.+|
T Consensus       212 vDvv~D~vG~-~~~~~~l~~l~~~G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~g  290 (326)
T COG0604         212 VDVVLDTVGG-DTFAASLAALAPGGRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASG  290 (326)
T ss_pred             ceEEEECCCH-HHHHHHHHHhccCCEEEEEecCCCCCccccCHHHHhhccEEEEEecceecchHHHHHHHHHHHHHHHcC
Confidence            6999999976 55888999999999999999866 2 55677777888899988877542       4677799999999


Q ss_pred             CCCCccceeeeeCcccHHHHHHHHhcC-CCCceEEEEee
Q psy12355         72 KCPVRKLITHNFKLEEAVEAFKTASKK-ADDTIKIMIHC  109 (112)
Q Consensus        72 ~~~~~~~~~~~~~l~~~~~a~~~~~~~-~~~~~k~v~~~  109 (112)
                      .+++  .++.+|||+|..++....... + ..||+|+.+
T Consensus       291 ~l~~--~i~~~~~l~e~~~a~a~~~~~~~-~~GKvvl~~  326 (326)
T COG0604         291 KLKP--VIDRVYPLAEAPAAAAHLLLERR-TTGKVVLKV  326 (326)
T ss_pred             CCcc--eeccEechhhhHHHHHHHHcccC-CcceEEEeC
Confidence            8865  577899999965555554444 5 459999864

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.43  E-value=1.8e-12  Score=86.91  Aligned_cols=105  Identities=20%  Similarity=0.176  Sum_probs=82.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-cc-----ccChhhhhhcCeeEEeEeccC------CCHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MV-----SVPLVNACAKEIDILSCFRYV------NDYPDALEMV   68 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~-----~~~~~~~~~~~~~l~g~~~~~------~~~~~~~~~~   68 (112)
                      +|+++|++|+ ..+..++++++++|+++.+|.... ..     ..+...++++++++.+++...      ..++++++++
T Consensus       222 vd~v~d~~g~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~  300 (338)
T cd08295         222 IDIYFDNVGG-KMLDAVLLNMNLHGRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYI  300 (338)
T ss_pred             cEEEEECCCH-HHHHHHHHHhccCcEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEehhhHHHHHHHHHHHHHHH
Confidence            5899999987 568999999999999999996543 11     134456778888988865422      3467889999


Q ss_pred             HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      .+|++++.  +...|+++++.+|++.+.+++. .+|+|+.+
T Consensus       301 ~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~-~GkvVl~~  338 (338)
T cd08295         301 KEGKLKYV--EDIADGLESAPEAFVGLFTGSN-IGKQVVKV  338 (338)
T ss_pred             HCCCeEce--eecccCHHHHHHHHHHHhcCCC-CceEEEEC
Confidence            99988764  4456999999999999998874 59999864

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.41  E-value=4.9e-12  Score=84.37  Aligned_cols=105  Identities=24%  Similarity=0.412  Sum_probs=88.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI   79 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~   79 (112)
                      +|+++||+|....+..++++++++|+++.+|.......++...++.++.++.+++... ..+.++++++.++.+++.   
T Consensus       233 ~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~---  309 (338)
T cd08254         233 FDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRDKLTVDLSDLIARELRIIGSFGGTPEDLPEVLDLIAKGKLDPQ---  309 (338)
T ss_pred             ceEEEECCCCHHHHHHHHHHhhcCCEEEEECCCCCCCccCHHHHhhCccEEEEeccCCHHHHHHHHHHHHcCCCccc---
Confidence            5899999988888999999999999999998765555566677888999999877554 788999999999988764   


Q ss_pred             eeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         80 THNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      .+.++++++.++++.+.+++ ..+|+|+.+
T Consensus       310 ~~~~~~~~~~~a~~~~~~~~-~~~kvv~~~  338 (338)
T cd08254         310 VETRPLDEIPEVLERLHKGK-VKGRVVLVP  338 (338)
T ss_pred             ceeEcHHHHHHHHHHHHcCC-ccceEEEeC
Confidence            46899999999999999887 458998864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.41  E-value=5.6e-12  Score=84.52  Aligned_cols=106  Identities=25%  Similarity=0.408  Sum_probs=87.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEec-cCCCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFR-YVNDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|+++||+|.+..+..++++++++|+++.+|.... ....+....+.+++++.+... ..+.+.++++++.++.+++.++
T Consensus       236 ~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  315 (344)
T cd08284         236 ADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHTAEEFPFPGLDAYNKNLTLRFGRCPVRSLFPELLPLLESGRLDLEFL  315 (344)
T ss_pred             CCEEEECCCCHHHHHHHHHhcccCCEEEEECcCCCCCccccHHHHhhcCcEEEEecCCcchhHHHHHHHHHcCCCChHHh
Confidence            58999999987789999999999999999997653 444555667778888776543 3378999999999998876656


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      +++.++++++.++++.+.+++ . +|+|+.
T Consensus       316 ~~~~~~~~~~~~a~~~~~~~~-~-~k~Vi~  343 (344)
T cd08284         316 IDHRMPLEEAPEAYRLFDKRK-V-LKVVLD  343 (344)
T ss_pred             EeeeecHHHHHHHHHHHhcCC-c-eEEEec
Confidence            778899999999999988876 4 999875

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.41  E-value=7.1e-12  Score=82.80  Aligned_cols=107  Identities=26%  Similarity=0.414  Sum_probs=87.8

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-----CCHHHHHHHHHcCCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-----NDYPDALEMVASGKCP   74 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-----~~~~~~~~~~~~g~~~   74 (112)
                      +|+++||+|....+..++++++++|+++.+|.... +.++++..+.+++.++.++....     +.++++++++.++.++
T Consensus       199 vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  278 (312)
T cd08269         199 ADVVIEAVGHQWPLDLAGELVAERGRLVIFGYHQDGPRPVPFQTWNWKGIDLINAVERDPRIGLEGMREAVKLIADGRLD  278 (312)
T ss_pred             CCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCCcccCHHHHhhcCCEEEEecccCccchhhHHHHHHHHHHcCCCC
Confidence            58999999887778999999999999999996542 45566667788888888765322     5788999999999887


Q ss_pred             CccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         75 VRKLITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        75 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      +.+++++.|+++++++|++.+.+++.+.+|+++
T Consensus       279 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  311 (312)
T cd08269         279 LGSLLTHEFPLEELGDAFEAARRRPDGFIKGVI  311 (312)
T ss_pred             chhheeeeecHHHHHHHHHHHHhCCCCceEEEe
Confidence            654566789999999999999998766799886

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=99.40  E-value=5.4e-12  Score=85.61  Aligned_cols=105  Identities=19%  Similarity=0.332  Sum_probs=86.8

Q ss_pred             CcEEEEcccChHHHHHHHhhcc-CCcEEEEEecCC--CccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTK-MGGKLMLVGMGP--QMVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGKC   73 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~-~~G~iv~~g~~~--~~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~~   73 (112)
                      +|+++|++|...++..++++++ ++|+++.+|...  ....++...+ .++.++.|++..    ...+.++++++.++.+
T Consensus       254 ~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~l  332 (365)
T cd05279         254 VDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLDPNDL-LTGRTIKGTVFGGWKSKDSVPKLVALYRQKKF  332 (365)
T ss_pred             CcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCCCCCceeeCHHHH-hcCCeEEEEeccCCchHhHHHHHHHHHHcCCc
Confidence            5899999988778999999999 999999999754  3566666666 678888887642    3678899999999998


Q ss_pred             CCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      ++.++++++++++++++|++.+.+++.  .|++++
T Consensus       333 ~~~~~~~~~~~l~~~~~a~~~~~~~~~--~~~~~~  365 (365)
T cd05279         333 PLDELITHVLPFEEINDGFDLMRSGES--IRTILT  365 (365)
T ss_pred             chhHheeeeecHHHHHHHHHHHhCCCc--eeeeeC
Confidence            877678889999999999999987764  787763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd05281 TDH Threonine dehydrogenase

Probab=99.39  E-value=9.6e-12  Score=83.52  Aligned_cols=107  Identities=21%  Similarity=0.317  Sum_probs=85.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChh-hhhhcCeeEEeEecc--CCCHHHHHHHHHcCCCCCcc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLV-NACAKEIDILSCFRY--VNDYPDALEMVASGKCPVRK   77 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~-~~~~~~~~l~g~~~~--~~~~~~~~~~~~~g~~~~~~   77 (112)
                      +|+++||+|....+..++++++++|+++.+|.......+++. .+..++..+.+....  ...+.++.+++.++.+++.+
T Consensus       232 vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~  311 (341)
T cd05281         232 VDVVLEMSGNPKAIEQGLKALTPGGRVSILGLPPGPVDIDLNNLVIFKGLTVQGITGRKMFETWYQVSALLKSGKVDLSP  311 (341)
T ss_pred             CCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCcccccchhhhccceEEEEEecCCcchhHHHHHHHHHcCCCChhH
Confidence            589999998887889999999999999999865543333432 366788888776632  25688899999999987666


Q ss_pred             ceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         78 LITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        78 ~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +++..++++++++|++.+.+++ . +|+++++
T Consensus       312 ~~~~~~~~~~~~~a~~~~~~~~-~-gk~vv~~  341 (341)
T cd05281         312 VITHKLPLEDFEEAFELMRSGK-C-GKVVLYP  341 (341)
T ss_pred             heEEEecHHHHHHHHHHHhcCC-C-ceEEecC
Confidence            6777899999999999998877 3 9998764

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.39  E-value=9e-12  Score=85.07  Aligned_cols=105  Identities=25%  Similarity=0.364  Sum_probs=84.7

Q ss_pred             CcEEEEcccCh-HHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC--CCHHHHHHHHHcCCCCCcc
Q psy12355          1 MMLYLDPLGTE-NCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV--NDYPDALEMVASGKCPVRK   77 (112)
Q Consensus         1 ~D~v~d~~g~~-~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~--~~~~~~~~~~~~g~~~~~~   77 (112)
                      +|+++||+|.+ ..+..++++++++|+++.+|.......+++..+..+..++.+++...  ..+.++++++.++.+++.+
T Consensus       276 vDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~g~l~~~~  355 (384)
T cd08265         276 ADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAATTVPLHLEVLQVRRAQIVGAQGHSGHGIFPSVIKLMASGKIDMTK  355 (384)
T ss_pred             CCEEEECCCCcHHHHHHHHHHHHcCCEEEEECCCCCCCcccHHHHhhCceEEEEeeccCCcchHHHHHHHHHcCCCChHH
Confidence            58999999873 56889999999999999999655444555566777788888887532  5799999999999988766


Q ss_pred             ceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         78 LITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        78 ~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      ++++.|+++++.+|++.+.++.  .+|+++
T Consensus       356 ~~~~~~~~~~~~~a~~~~~~~~--~~kvvv  383 (384)
T cd08265         356 IITARFPLEGIMEAIKAASERT--DGKITI  383 (384)
T ss_pred             heEEEeeHHHHHHHHHHHhcCC--CceEEe
Confidence            6778899999999999976654  388875

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.39  E-value=6.3e-12  Score=84.42  Aligned_cols=105  Identities=15%  Similarity=0.191  Sum_probs=87.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCc-cccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQM-VSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~-~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|+++||+|. ..+..++++++++|+++.+|....+ ..+++..++.+++++.++.... ..+.++++++.++++++  +
T Consensus       244 ~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~--~  320 (350)
T cd08274         244 VDVVADVVGG-PLFPDLLRLLRPGGRYVTAGAIAGPVVELDLRTLYLKDLTLFGSTLGTREVFRRLVRYIEEGEIRP--V  320 (350)
T ss_pred             CcEEEecCCH-HHHHHHHHHhccCCEEEEecccCCccccCCHHHhhhcceEEEEeecCCHHHHHHHHHHHHCCCccc--c
Confidence            5899999986 4689999999999999999865443 5677777788999999887654 78999999999998754  4


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +++.|+++++.+|++.+..+. ..+|+++.+
T Consensus       321 ~~~~~~~~~~~~a~~~~~~~~-~~~kvvi~~  350 (350)
T cd08274         321 VAKTFPLSEIREAQAEFLEKR-HVGKLVLVP  350 (350)
T ss_pred             cccccCHHHHHHHHHHHhcCC-CceEEEEeC
Confidence            678899999999999998876 458998864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.39  E-value=3.5e-12  Score=85.14  Aligned_cols=103  Identities=18%  Similarity=0.145  Sum_probs=79.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-----ccc--cChhhhhhcCeeEEeEeccC-------CCHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-----MVS--VPLVNACAKEIDILSCFRYV-------NDYPDALE   66 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-----~~~--~~~~~~~~~~~~l~g~~~~~-------~~~~~~~~   66 (112)
                      +|+++||+|++ .+..++++++++|+++.+|....     ..+  .....++++++++.++....       ..++++++
T Consensus       208 vdvv~d~~G~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  286 (325)
T TIGR02825       208 YDCYFDNVGGE-FSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKALKELLK  286 (325)
T ss_pred             eEEEEECCCHH-HHHHHHHHhCcCcEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhhhhhHHHHHHHHH
Confidence            58999999875 47999999999999999996432     111  12345677888888876321       35788999


Q ss_pred             HHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         67 MVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        67 ~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      ++.+|++++.  +...|+|+++.+|++.+.+++ ..+|+|+
T Consensus       287 l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~-~~gkvVv  324 (325)
T TIGR02825       287 WVLEGKIQYK--EYVIEGFENMPAAFMGMLKGE-NLGKTIV  324 (325)
T ss_pred             HHHCCCcccc--eeccccHHHHHHHHHHHhcCC-CCCeEEe
Confidence            9999998765  345689999999999999887 4589886

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.38  E-value=8e-12  Score=84.72  Aligned_cols=106  Identities=26%  Similarity=0.521  Sum_probs=86.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEeccC--CCHHHHHHHHHcCCCCCc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRYV--NDYPDALEMVASGKCPVR   76 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~~--~~~~~~~~~~~~g~~~~~   76 (112)
                      +|+++||+|+...+..++++++++|+++.+|....  +..++...++.+++++.+++...  ..++++++++.++.+++.
T Consensus       257 ~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~  336 (367)
T cd08263         257 VDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGGATAEIPITRLVRRGIKIIGSYGARPRQDLPELVGLAASGKLDPE  336 (367)
T ss_pred             CCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCCCCccccCHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHcCCCCcc
Confidence            58999999886568899999999999999986543  34566666667899988865432  578889999999998776


Q ss_pred             cceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         77 KLITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        77 ~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      +++++.++++++.+|++.+.++.. .+|+|+
T Consensus       337 ~~~~~~~~~~~~~~a~~~~~~~~~-~g~~~~  366 (367)
T cd08263         337 ALVTHKYKLEEINEAYENLRKGLI-HGRAIV  366 (367)
T ss_pred             cceeEEecHHHHHHHHHHHhcCCc-cceeee
Confidence            567788999999999999998874 488886

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.38  E-value=2.1e-12  Score=88.60  Aligned_cols=108  Identities=10%  Similarity=0.179  Sum_probs=92.1

Q ss_pred             CcEEEEcccChHHHHHH-HhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCC--CHH--HHHHHHHcCCC-C
Q psy12355          1 MMLYLDPLGTENCLTLG-INVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVN--DYP--DALEMVASGKC-P   74 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~-~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~--~~~--~~~~~~~~g~~-~   74 (112)
                      +|++++|+|++.++... +++++++|+++.+|.+  +.+++...+..+++++.++..+..  .++  +.+.++++|++ +
T Consensus       258 aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~--~~eId~~~L~~~el~i~g~~~~~~~~~~~~g~aI~LLa~Grlvn  335 (413)
T cd00401         258 GDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHF--DVEIDVKGLKENAVEVVNIKPQVDRYELPDGRRIILLAEGRLVN  335 (413)
T ss_pred             CCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCC--CCccCHHHHHhhccEEEEccCCcceEEcCCcchhhhhhCcCCCC
Confidence            59999999999988887 9999999999999965  467888889999999999988753  566  79999999998 8


Q ss_pred             Cccceeee-----eCcc-cHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         75 VRKLITHN-----FKLE-EAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        75 ~~~~~~~~-----~~l~-~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      +.++++|.     ++|+ |+.++++.+.+++....|+++.++
T Consensus       336 l~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p~  377 (413)
T cd00401         336 LGCATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLPK  377 (413)
T ss_pred             CcccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECCH
Confidence            88889998     9999 999999999887633367777653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.38  E-value=9.7e-12  Score=83.71  Aligned_cols=106  Identities=15%  Similarity=0.197  Sum_probs=86.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI   79 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~   79 (112)
                      +|+++|++|.+..+..++++++++|+++.+|.......++...+.+++.++.+.+... +++.+++++++++.+++.  .
T Consensus       244 ~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~i~~~--~  321 (350)
T cd08240         244 VDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGEATLPLPLLPLRALTIQGSYVGSLEELRELVALAKAGKLKPI--P  321 (350)
T ss_pred             CcEEEECCCCHHHHHHHHHHhhcCCeEEEECCCCCCCcccHHHHhhcCcEEEEcccCCHHHHHHHHHHHHcCCCccc--e
Confidence            5899999987788999999999999999998765544445555667899998887655 788999999999987643  5


Q ss_pred             eeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         80 THNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ...|+++++.+|++.+.+++ ..+|+++++
T Consensus       322 ~~~~~~~~~~~a~~~~~~~~-~~gkvvv~~  350 (350)
T cd08240         322 LTERPLSDVNDALDDLKAGK-VVGRAVLKP  350 (350)
T ss_pred             eeEEcHHHHHHHHHHHHcCC-ccceEEecC
Confidence            56799999999999998887 459988753

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.38  E-value=8.5e-12  Score=83.78  Aligned_cols=107  Identities=22%  Similarity=0.342  Sum_probs=88.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-c--cccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-M--VSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVR   76 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~--~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~   76 (112)
                      +|+++||+|+...+..++++++++|+++.+|.... .  ..+++..++.+++++.+..... +.+++++++++++.+.+.
T Consensus       234 ~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~  313 (345)
T cd08260         234 AHVSVDALGIPETCRNSVASLRKRGRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHGMPAHRYDAMLALIASGKLDPE  313 (345)
T ss_pred             CCEEEEcCCCHHHHHHHHHHhhcCCEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCcCCHHHHHHHHHHHHcCCCChh
Confidence            58999999877778999999999999999997653 2  4556666778899988876544 789999999999988766


Q ss_pred             cceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         77 KLITHNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        77 ~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      +++++.++++++++|++.+.++. ..+|+|++
T Consensus       314 ~~~~~~~~~~~~~~a~~~~~~~~-~~~~~v~~  344 (345)
T cd08260         314 PLVGRTISLDEAPDALAAMDDYA-TAGITVIT  344 (345)
T ss_pred             hheeEEecHHHHHHHHHHHHcCC-CCceEEec
Confidence            55678899999999999999887 45888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.38  E-value=6.4e-12  Score=85.93  Aligned_cols=104  Identities=12%  Similarity=0.135  Sum_probs=85.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|+++||+|. ..+..++++++++|+++.+|.... ...++...++.++.++.+++... +.+.++++++.++.+++  .
T Consensus       286 ~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~--~  362 (393)
T cd08246         286 PDIVFEHPGR-ATFPTSVFVCDRGGMVVICAGTTGYNHTYDNRYLWMRQKRIQGSHFANDREAAEANRLVMKGRIDP--C  362 (393)
T ss_pred             CeEEEECCch-HhHHHHHHHhccCCEEEEEcccCCCCCCCcHHHHhhheeEEEecccCcHHHHHHHHHHHHcCCcee--e
Confidence            5899999986 568999999999999999986543 34566667788899999887655 68899999999998764  4


Q ss_pred             eeeeeCcccHHHHHHHHhcC-CCCceEEEEe
Q psy12355         79 ITHNFKLEEAVEAFKTASKK-ADDTIKIMIH  108 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~-~~~~~k~v~~  108 (112)
                      ++++|+++++++|++.+.++ + ..+|+++-
T Consensus       363 ~~~~~~l~~~~~a~~~~~~~~~-~~gkvvv~  392 (393)
T cd08246         363 LSKVFSLDETPDAHQLMHRNQH-HVGNMAVL  392 (393)
T ss_pred             eeEEEeHHHHHHHHHHHHhCcc-ccceEEEe
Confidence            77889999999999999887 5 44888763

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=99.38  E-value=9.4e-12  Score=84.44  Aligned_cols=105  Identities=22%  Similarity=0.306  Sum_probs=85.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC--CccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP--QMVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGKCP   74 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~--~~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~~~   74 (112)
                      +|+++||+|.+..+..++++++++|+++.+|...  ....+++..+..+++++.++...    .+.++++++++.+++++
T Consensus       255 ~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~  334 (365)
T cd08278         255 VDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPGAEVTLDVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFP  334 (365)
T ss_pred             CcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCCCCccccCHHHHhhcCceEEEeecCCcChHHHHHHHHHHHHcCCCC
Confidence            5899999998778899999999999999999753  34567777777889998887642    14678899999999886


Q ss_pred             CccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         75 VRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        75 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      +.++++ .|+++++++|++.+.+++.  .|++++
T Consensus       335 ~~~~~~-~~~l~~~~~a~~~~~~~~~--~k~~~~  365 (365)
T cd08278         335 FDKLVT-FYPFEDINQAIADSESGKV--IKPVLR  365 (365)
T ss_pred             hHHheE-EecHHHHHHHHHHHHCCCc--eEEEEC
Confidence            544454 7999999999999998774  788873

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.37  E-value=1.4e-11  Score=82.50  Aligned_cols=104  Identities=22%  Similarity=0.349  Sum_probs=84.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEecc-CCCHHHHHHHHHcCCCCCccce
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY-VNDYPDALEMVASGKCPVRKLI   79 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~g~~~~~~~~   79 (112)
                      +|+++||+|....+..++++++++|+++.+|.... .+++...++.+++++.++... ...+.++++++.++.+++   .
T Consensus       236 ~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~---~  311 (340)
T cd05284         236 ADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGGH-GRLPTSDLVPTEISVIGSLWGTRAELVEVVALAESGKVKV---E  311 (340)
T ss_pred             CCEEEEcCCCHHHHHHHHHHhhcCCEEEEEcCCCC-CccCHHHhhhcceEEEEEecccHHHHHHHHHHHHhCCCCc---c
Confidence            58999999987778999999999999999996553 444555556789998887653 477899999999998764   3


Q ss_pred             eeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         80 THNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      .+.|+++++++|++.+.+++ ..+|+++.+
T Consensus       312 ~~~~~~~~~~~a~~~~~~~~-~~gkvv~~~  340 (340)
T cd05284         312 ITKFPLEDANEALDRLREGR-VTGRAVLVP  340 (340)
T ss_pred             eEEEeHHHHHHHHHHHHcCC-ccceEEecC
Confidence            46799999999999999887 458988753

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.37  E-value=1.9e-11  Score=81.85  Aligned_cols=109  Identities=28%  Similarity=0.493  Sum_probs=87.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI   79 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~   79 (112)
                      +|+++||+|....+..++++++++|+++.+|....+..++...+..+++++.+..... +.++++.+++.+|.+++.+.+
T Consensus       228 vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~  307 (337)
T cd08261         228 ADVVIDATGNPASMEEAVELVAHGGRVVLVGLSKGPVTFPDPEFHKKELTILGSRNATREDFPDVIDLLESGKVDPEALI  307 (337)
T ss_pred             CCEEEECCCCHHHHHHHHHHHhcCCEEEEEcCCCCCCccCHHHHHhCCCEEEEeccCChhhHHHHHHHHHcCCCChhhhe
Confidence            5899999988777899999999999999998665544555556677888887765333 678999999999988764346


Q ss_pred             eeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         80 THNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ...++++++.+|++.+.+++...+|+|+++
T Consensus       308 ~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~  337 (337)
T cd08261         308 THRFPFEDVPEAFDLWEAPPGGVIKVLIEF  337 (337)
T ss_pred             EEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence            678999999999999988742459999864

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.34  E-value=2.8e-11  Score=80.80  Aligned_cols=105  Identities=25%  Similarity=0.475  Sum_probs=85.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|+++||+|....+..++++++++|+++.+|....  ...++...+..+++++.+.......++++++++.++++++.+.
T Consensus       227 vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  306 (334)
T cd08234         227 FDVVIEATGVPKTLEQAIEYARRGGTVLVFGVYAPDARVSISPFEIFQKELTIIGSFINPYTFPRAIALLESGKIDVKGL  306 (334)
T ss_pred             CcEEEECCCChHHHHHHHHHHhcCCEEEEEecCCCCCCcccCHHHHHhCCcEEEEeccCHHHHHHHHHHHHcCCCChhhh
Confidence            58999999877888999999999999999986543  3445555566688888887755577899999999998876655


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      ++.+++++++++|++.+.+ . ..+|+++
T Consensus       307 ~~~~~~~~~~~~a~~~~~~-~-~~~k~vi  333 (334)
T cd08234         307 VSHRLPLEEVPEALEGMRS-G-GALKVVV  333 (334)
T ss_pred             EEEEecHHHHHHHHHHHhc-C-CceEEEe
Confidence            6778999999999999988 5 4589886

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.33  E-value=3.7e-11  Score=80.53  Aligned_cols=106  Identities=31%  Similarity=0.512  Sum_probs=86.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCcc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRK   77 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~   77 (112)
                      +|+++||+|....+..++++++++|+++.+|....  ...+++..+..+++.+.+.+... ..++++++++.++.+++.+
T Consensus       235 vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~  314 (343)
T cd08235         235 ADVVIVATGSPEAQAQALELVRKGGRILFFGGLPKGSTVNIDPNLIHYREITITGSYAASPEDYKEALELIASGKIDVKD  314 (343)
T ss_pred             CCEEEECCCChHHHHHHHHHhhcCCEEEEEeccCCCCCcccCHHHHhhCceEEEEEecCChhhHHHHHHHHHcCCCChHH
Confidence            58999999877778999999999999999986443  34556666778888888877544 7789999999999887544


Q ss_pred             ceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         78 LITHNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        78 ~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      .+...|+++++.+|++.+.+++ . +|+|++
T Consensus       315 ~~~~~~~~~~~~~a~~~~~~~~-~-~k~vi~  343 (343)
T cd08235         315 LITHRFPLEDIEEAFELAADGK-S-LKIVIT  343 (343)
T ss_pred             heeeEeeHHHHHHHHHHHhCCC-c-EEEEeC
Confidence            5667899999999999998877 3 899873

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.33  E-value=3e-11  Score=82.23  Aligned_cols=107  Identities=23%  Similarity=0.258  Sum_probs=84.8

Q ss_pred             CcEEEEcccChH-----------HHHHHHhhccCCcEEEEEecCCC-------------ccccChhhhhhcCeeEEeEec
Q psy12355          1 MMLYLDPLGTEN-----------CLTLGINVTKMGGKLMLVGMGPQ-------------MVSVPLVNACAKEIDILSCFR   56 (112)
Q Consensus         1 ~D~v~d~~g~~~-----------~~~~~~~~l~~~G~iv~~g~~~~-------------~~~~~~~~~~~~~~~l~g~~~   56 (112)
                      +|+++||+|...           ++..++++++++|+++.+|....             ...++...++.++..+.+...
T Consensus       244 ~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (375)
T cd08282         244 VDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYVAEDPGAGDAAAKQGELSFDFGLLWAKGLSFGTGQA  323 (375)
T ss_pred             CCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccCCcccccccccccCccccccHHHHHhcCcEEEEecC
Confidence            589999998753           58899999999999998886431             123455566777887777665


Q ss_pred             cC-CCHHHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         57 YV-NDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        57 ~~-~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      .. ..++++++++.++++++.++++++|+++++++|++.+.+++  .+|+|+.+
T Consensus       324 ~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~--~~kvvv~~  375 (375)
T cd08282         324 PVKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRL--ETKVVIKP  375 (375)
T ss_pred             CchhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCC--ceEEEeCC
Confidence            33 67889999999999987656889999999999999999877  38998753

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.33  E-value=2.1e-11  Score=81.19  Aligned_cols=105  Identities=16%  Similarity=0.167  Sum_probs=80.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-c---c---ccChhhhhhcCeeEEeEeccC------CCHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-M---V---SVPLVNACAKEIDILSCFRYV------NDYPDALEM   67 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~---~---~~~~~~~~~~~~~l~g~~~~~------~~~~~~~~~   67 (112)
                      +|+++|++|. ..+..++++++++|+++.+|.... .   .   ......++.+++++.+++...      ..+++++++
T Consensus       212 vd~vld~~g~-~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  290 (329)
T cd08294         212 IDCYFDNVGG-EFSSTVLSHMNDFGRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKW  290 (329)
T ss_pred             cEEEEECCCH-HHHHHHHHhhccCCEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhhhhHHHHHHHHHHHHHH
Confidence            5899999987 568999999999999999985321 1   1   122345778889998876432      236788999


Q ss_pred             HHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         68 VASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        68 ~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +.+|++++.+  ...|+++++++|++.+.+++ ..+|+|+.+
T Consensus       291 ~~~g~i~~~~--~~~~~l~~~~~A~~~~~~~~-~~gkvvv~~  329 (329)
T cd08294         291 IKEGKLKYRE--HVTEGFENMPQAFIGMLKGE-NTGKAIVKV  329 (329)
T ss_pred             HHCCCCcCCc--ccccCHHHHHHHHHHHHcCC-CCCeEEEeC
Confidence            9999887653  34689999999999999888 459998863

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.32  E-value=2.5e-11  Score=83.27  Aligned_cols=105  Identities=13%  Similarity=0.141  Sum_probs=86.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|++|||+|. ..+..++++++++|+++.+|.... +..++...++.++.++.++.... .+++++++++.++.+++  .
T Consensus       281 ~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~  357 (398)
T TIGR01751       281 PDIVFEHPGR-ATFPTSVFVCRRGGMVVICGGTTGYNHDYDNRYLWMRQKRIQGSHFANLREAWEANRLVAKGRIDP--T  357 (398)
T ss_pred             ceEEEECCcH-HHHHHHHHhhccCCEEEEEccccCCCCCcCHHHHhhcccEEEccccCcHHHHHHHHHHHHCCCccc--c
Confidence            5899999985 568999999999999999997654 35566666777888888876544 56789999999998764  4


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +++++++++++++++.+.++. ..+|+|+.+
T Consensus       358 ~~~~~~l~~~~~a~~~~~~~~-~~gkvvv~~  387 (398)
T TIGR01751       358 LSKVYPLEEIGQAHQDVHRNH-HQGNVAVLV  387 (398)
T ss_pred             eeeEEcHHHHHHHHHHHHcCC-CCceEEEEe
Confidence            778999999999999998887 458998876

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.31  E-value=5.3e-11  Score=79.53  Aligned_cols=105  Identities=26%  Similarity=0.354  Sum_probs=83.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCcc--ccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCcc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMV--SVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRK   77 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~--~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~   77 (112)
                      +|+++||+|+. .+..++++++++|+++.+|......  +++...++.++.++.+..... .+++++++++.++.+++  
T Consensus       226 ~d~~ld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--  302 (334)
T PRK13771        226 ADIVIETVGTP-TLEESLRSLNMGGKIIQIGNVDPSPTYSLRLGYIILKDIEIIGHISATKRDVEEALKLVAEGKIKP--  302 (334)
T ss_pred             CcEEEEcCChH-HHHHHHHHHhcCCEEEEEeccCCCCCcccCHHHHHhcccEEEEecCCCHHHHHHHHHHHHcCCCcc--
Confidence            58999999874 5889999999999999999754321  244444567888888876433 77899999999998753  


Q ss_pred             ceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         78 LITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        78 ~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ++++.|+++++.+|++.+.++. ..+|+++.+
T Consensus       303 ~~~~~~~~~~~~~a~~~~~~~~-~~~kvv~~~  333 (334)
T PRK13771        303 VIGAEVSLSEIDKALEELKDKS-RIGKILVKP  333 (334)
T ss_pred             eEeeeEcHHHHHHHHHHHHcCC-CcceEEEec
Confidence            4778899999999999998876 458988864

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.30  E-value=6e-11  Score=79.61  Aligned_cols=107  Identities=26%  Similarity=0.446  Sum_probs=83.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccc---cChhhhhhcCeeEEeEecc------CCCHHHHHHHHHcC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVS---VPLVNACAKEIDILSCFRY------VNDYPDALEMVASG   71 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~---~~~~~~~~~~~~l~g~~~~------~~~~~~~~~~~~~g   71 (112)
                      +|+++||+|....+..++++++++|+++.+|....+..   .+...++.++.++.+++..      .+.++++.+++.++
T Consensus       228 ~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (343)
T cd08236         228 ADLVIEAAGSPATIEQALALARPGGKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSYSAPFPGDEWRTALDLLASG  307 (343)
T ss_pred             CCEEEECCCCHHHHHHHHHHhhcCCEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeeccccccchhhHHHHHHHHHcC
Confidence            58999999877778999999999999999996554322   2334566888888887643      25688899999999


Q ss_pred             CCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         72 KCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        72 ~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      .+++.+.+...+++++++++++.+.++....+|+|+
T Consensus       308 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~  343 (343)
T cd08236         308 KIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL  343 (343)
T ss_pred             CCChHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence            886444566789999999999999984435588874

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.30  E-value=4.5e-11  Score=78.83  Aligned_cols=105  Identities=20%  Similarity=0.217  Sum_probs=83.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhh--cCeeEEeEecc-----CCCHHHHHHHHHcCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACA--KEIDILSCFRY-----VNDYPDALEMVASGK   72 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~--~~~~l~g~~~~-----~~~~~~~~~~~~~g~   72 (112)
                      +|+++||+|+. .+..++++++++|+++.+|.... ...+++..+..  ++.++.++...     ...+.++.+++.+++
T Consensus       193 ~d~vl~~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (305)
T cd08270         193 VDLVVDSVGGP-QLARALELLAPGGTVVSVGSSSGEPAVFNPAAFVGGGGGRRLYTFFLYDGEPLAADLARLLGLVAAGR  271 (305)
T ss_pred             ceEEEECCCcH-HHHHHHHHhcCCCEEEEEeccCCCcccccHHHHhcccccceEEEEEccCHHHHHHHHHHHHHHHHCCC
Confidence            58999999875 58999999999999999996543 34455555554  68888887754     256788999999998


Q ss_pred             CCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         73 CPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        73 ~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +++.  +.++++++++++|++.+.++. ..+|+++.+
T Consensus       272 i~~~--~~~~~~~~~~~~a~~~~~~~~-~~gkvvi~~  305 (305)
T cd08270         272 LDPR--IGWRGSWTEIDEAAEALLARR-FRGKAVLDV  305 (305)
T ss_pred             ccce--eccEEcHHHHHHHHHHHHcCC-CCceEEEeC
Confidence            8753  667899999999999998877 458998864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.30  E-value=4.3e-11  Score=79.51  Aligned_cols=103  Identities=15%  Similarity=0.194  Sum_probs=82.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-----------CCHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-----------NDYPDALEMV   68 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-----------~~~~~~~~~~   68 (112)
                      +|+++||+|.+ ....++++++++|+++.+|.... ...+++.....++.++.++....           ..+.++++++
T Consensus       209 ~d~v~d~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  287 (324)
T cd08292         209 ISVALDSVGGK-LAGELLSLLGEGGTLVSFGSMSGEPMQISSGDLIFKQATVRGFWGGRWSQEMSVEYRKRMIAELLTLA  287 (324)
T ss_pred             CcEEEECCCCh-hHHHHHHhhcCCcEEEEEecCCCCCCcCCHHHHhhCCCEEEEEEcHHhhhhcCHHHHHHHHHHHHHHH
Confidence            58999999875 57889999999999999997543 45566666778999998876421           3578899999


Q ss_pred             HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      .+|.+++.  +.+.|+++++.+|++.+.++. ..+|+++
T Consensus       288 ~~g~i~~~--~~~~~~~~~~~~a~~~~~~~~-~~~kvvv  323 (324)
T cd08292         288 LKGQLLLP--VEAVFDLGDAAKAAAASMRPG-RAGKVLL  323 (324)
T ss_pred             HCCCccCc--cccEecHHHHHHHHHHHHcCC-CCceEEe
Confidence            99988753  467899999999999998776 4588876

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.29  E-value=8.7e-11  Score=78.83  Aligned_cols=109  Identities=24%  Similarity=0.390  Sum_probs=82.8

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCcccc-ChhhhhhcCeeEEeEecc-CCCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSV-PLVNACAKEIDILSCFRY-VNDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~-~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|+++||+|....+..++++++++|+++.+|........ .....+.+++++.++... ...+.++++++.++.+++.++
T Consensus       237 ~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  316 (347)
T cd05278         237 VDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKPDPLPLLGEWFGKNLTFKTGLVPVRARMPELLDLIEEGKIDPSKL  316 (347)
T ss_pred             CcEEEEccCCHHHHHHHHHHhhcCCEEEEEcCCCCCcccCccchhhhceeEEEeeccCchhHHHHHHHHHHcCCCChhHc
Confidence            589999998766789999999999999999865432211 112334677777775533 367889999999998876555


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +...++++++++|++.+..++...+|+|+++
T Consensus       317 ~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~~  347 (347)
T cd05278         317 ITHRFPLDDILKAYRLFDNKPDGCIKVVIRP  347 (347)
T ss_pred             EEEEecHHHHHHHHHHHhcCCCCceEEEecC
Confidence            6678999999999999987763258988764

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.28  E-value=8.4e-11  Score=78.84  Aligned_cols=105  Identities=19%  Similarity=0.291  Sum_probs=86.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|+++||.+....+..++++++++|+++.+|.... ..+++...++.+++++.+..... ..++++++++.++.+++  .
T Consensus       235 vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~  312 (341)
T cd08297         235 AHAVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPGGFIPLDPFDLVLRGITIVGSLVGTRQDLQEALEFAARGKVKP--H  312 (341)
T ss_pred             CCEEEEcCCchHHHHHHHHHhhcCCEEEEecCCCCCCCCCCHHHHHhcccEEEEeccCCHHHHHHHHHHHHcCCCcc--e
Confidence            58999988878889999999999999999997654 33566667778999998866443 78899999999998764  3


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      + +.|++++++++++.+..+. ..+|+++++
T Consensus       313 ~-~~~~~~~~~~a~~~~~~~~-~~gkvvi~~  341 (341)
T cd08297         313 I-QVVPLEDLNEVFEKMEEGK-IAGRVVVDF  341 (341)
T ss_pred             e-EEEcHHHHHHHHHHHHcCC-ccceEEEeC
Confidence            4 5799999999999999887 458998864

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.28  E-value=1.2e-10  Score=79.03  Aligned_cols=105  Identities=24%  Similarity=0.437  Sum_probs=84.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC--CccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP--QMVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGKCP   74 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~--~~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~~~   74 (112)
                      +|+++|++|....+..++++++++|+++.+|...  ....++...+..++..+.+++..    ...++++++++.++.++
T Consensus       252 vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~  331 (363)
T cd08279         252 ADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLK  331 (363)
T ss_pred             CCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCCCCcccccCHHHHhhcCcEEEEEEecCcCcHHHHHHHHHHHHcCCCC
Confidence            5899999987777899999999999999998654  24566766777778777776432    26788999999999987


Q ss_pred             CccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         75 VRKLITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        75 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      +.++++++|+++++.+|++.+.+++.  .|.|+
T Consensus       332 ~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~  362 (363)
T cd08279         332 LDELVTRRYSLDEINEAFADMLAGEN--ARGVI  362 (363)
T ss_pred             cceeEEEEEcHHHHHHHHHHHhcCCc--eeEEe
Confidence            76667788999999999999998874  45544

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=99.27  E-value=1.2e-10  Score=79.42  Aligned_cols=106  Identities=15%  Similarity=0.197  Sum_probs=82.0

Q ss_pred             CcEEEEcccChHHHHHHHhhc-cCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEeccC----CCHHHHHHHHHcCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVT-KMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRYV----NDYPDALEMVASGKC   73 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l-~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~~----~~~~~~~~~~~~g~~   73 (112)
                      +|+++||+|.+..+..++..+ +++|+++.+|....  +.+++.. .+.++.++.+++...    ..+.++++.+.++.+
T Consensus       261 ~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (373)
T cd08299         261 VDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQNLSINPM-LLLTGRTWKGAVFGGWKSKDSVPKLVADYMAKKF  339 (373)
T ss_pred             CeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCCCceeecCHH-HHhcCCeEEEEEecCCccHHHHHHHHHHHHcCCC
Confidence            589999999877788888866 57999999997643  3344443 334677888876532    467788888888888


Q ss_pred             CCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +++++++++|+++++.+|++.+..++.  .|+++.+
T Consensus       340 ~~~~~~~~~~~l~e~~~a~~~~~~~~~--~k~~~~~  373 (373)
T cd08299         340 NLDPLITHTLPFEKINEGFDLLRSGKS--IRTVLTF  373 (373)
T ss_pred             CchhheeeeecHHHHHHHHHHHhCCCc--ceEEEeC
Confidence            887788899999999999999987764  7888763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.25  E-value=1.9e-10  Score=76.97  Aligned_cols=106  Identities=14%  Similarity=0.257  Sum_probs=84.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI   79 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~   79 (112)
                      +|+++++++.+..+..++++++++|+++.+|.......++...+..++.++.+++.+. +.++++++++.+|.+++  .+
T Consensus       231 ~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~v  308 (338)
T PRK09422        231 AHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGLPPESMDLSIPRLVLDGIEVVGSLVGTRQDLEEAFQFGAEGKVVP--KV  308 (338)
T ss_pred             CcEEEEeCCCHHHHHHHHHhccCCCEEEEEeeCCCCceecHHHHhhcCcEEEEecCCCHHHHHHHHHHHHhCCCCc--cE
Confidence            3655555667788999999999999999999765555566667777888888876433 67889999999998754  35


Q ss_pred             eeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         80 THNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      + .++++++++|++.+.++. ..+|+++.+.
T Consensus       309 ~-~~~~~~~~~a~~~~~~~~-~~gkvvv~~~  337 (338)
T PRK09422        309 Q-LRPLEDINDIFDEMEQGK-IQGRMVIDFT  337 (338)
T ss_pred             E-EEcHHHHHHHHHHHHcCC-ccceEEEecC
Confidence            4 589999999999999887 4589998753

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.23  E-value=2.3e-10  Score=75.93  Aligned_cols=105  Identities=17%  Similarity=0.240  Sum_probs=82.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-------CCHHHHHHHHHcCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-------NDYPDALEMVASGK   72 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-------~~~~~~~~~~~~g~   72 (112)
                      +|+++||+|... ...++++++++|+++.+|.... +..++...++.+++++.+.....       ..+.++++++.++.
T Consensus       212 ~d~vl~~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  290 (324)
T cd08244         212 VTVVLDGVGGAI-GRAALALLAPGGRFLTYGWASGEWTALDEDDARRRGVTVVGLLGVQAERGGLRALEARALAEAAAGR  290 (324)
T ss_pred             ceEEEECCChHh-HHHHHHHhccCcEEEEEecCCCCCCccCHHHHhhCCcEEEEeecccCCHHHHHHHHHHHHHHHHCCC
Confidence            589999998765 6889999999999999997553 33555556678888888776422       45777889999998


Q ss_pred             CCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         73 CPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        73 ~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ++.  ++++.|+++++.+|++.+.++. ..+|+++.+
T Consensus       291 l~~--~~~~~~~~~~~~~a~~~~~~~~-~~~kvv~~~  324 (324)
T cd08244         291 LVP--VVGQTFPLERAAEAHAALEARS-TVGKVLLLP  324 (324)
T ss_pred             ccC--ccceEEeHHHHHHHHHHHHcCC-CCceEEEeC
Confidence            753  4677899999999999998877 458998764

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.19  E-value=5e-10  Score=73.11  Aligned_cols=105  Identities=22%  Similarity=0.346  Sum_probs=78.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEecc-------------CCCHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY-------------VNDYPDALEM   67 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~-------------~~~~~~~~~~   67 (112)
                      +|+++||+|....+..++++++++|+++.+|............+..+.+++.+....             .+.+++++++
T Consensus       160 ~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  239 (277)
T cd08255         160 ADVVIEASGSPSALETALRLLRDRGRVVLVGWYGLKPLLLGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDL  239 (277)
T ss_pred             CCEEEEccCChHHHHHHHHHhcCCcEEEEEeccCCCccccHHHHHhccCeEEeecccccccccccccccccccHHHHHHH
Confidence            589999998877889999999999999999975543111122345556566655421             1468899999


Q ss_pred             HHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         68 VASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        68 ~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      +.++.+++  ++.+.|+++++++|++.+.++.....|+++
T Consensus       240 ~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~~k~~~  277 (277)
T cd08255         240 LAEGRLEA--LITHRVPFEDAPEAYRLLFEDPPECLKVVL  277 (277)
T ss_pred             HHcCCccc--cccCccCHHHHHHHHHHHHcCCccceeeeC
Confidence            99998654  466789999999999999888545588764

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.18  E-value=7.6e-10  Score=73.62  Aligned_cols=103  Identities=14%  Similarity=0.156  Sum_probs=78.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEecc--C-----CCHHHHHHHHHcCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRY--V-----NDYPDALEMVASGK   72 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~--~-----~~~~~~~~~~~~g~   72 (112)
                      +|+++||+|+. .+..++++++++|+++.+|.... +..++...++.+++++.+....  .     ..+.++.+++.++.
T Consensus       212 ~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (323)
T TIGR02823       212 WAGAVDTVGGH-TLANVLAQLKYGGAVAACGLAGGPDLPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRLATDLKPRN  290 (323)
T ss_pred             ceEEEECccHH-HHHHHHHHhCCCCEEEEEcccCCCCccccHHHHhhcceEEEEEeccccCchhHHHHHHHHHHHhhcCC
Confidence            58999999865 58999999999999999997643 3444445666889998886532  1     12556666777776


Q ss_pred             CCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         73 CPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        73 ~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      ++.  + .+.|+++++++|++.+.+++ ..+|++++
T Consensus       291 ~~~--~-~~~~~l~~~~~a~~~~~~~~-~~~k~vv~  322 (323)
T TIGR02823       291 LES--I-TREITLEELPEALEQILAGQ-HRGRTVVD  322 (323)
T ss_pred             CcC--c-eeeecHHHHHHHHHHHhCCC-ccceEEEe
Confidence            643  3 45899999999999999887 45898875

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.16  E-value=7.1e-10  Score=73.81  Aligned_cols=106  Identities=16%  Similarity=0.197  Sum_probs=76.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEecc---CCCHHHHHHHHHcCCCC--
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRY---VNDYPDALEMVASGKCP--   74 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~---~~~~~~~~~~~~~g~~~--   74 (112)
                      +|+++||+|. ..+..++++++++|+++.+|.... ..++++..++.+++++.+....   .....+++..+.+ .+.  
T Consensus       214 ~d~vld~~g~-~~~~~~~~~l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  291 (326)
T cd08289         214 WAGAVDPVGG-KTLAYLLSTLQYGGSVAVSGLTGGGEVETTVFPFILRGVNLLGIDSVECPMELRRRIWRRLAT-DLKPT  291 (326)
T ss_pred             cCEEEECCcH-HHHHHHHHHhhcCCEEEEEeecCCCCCCcchhhhhhccceEEEEEeEecCchHHHHHHHHHHh-hcCcc
Confidence            5899999987 568999999999999999997643 3444466677899999997532   1223444443332 222  


Q ss_pred             -CccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         75 -VRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        75 -~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                       ....++++|+++++.+|++.+.+++ ..+|+++++
T Consensus       292 ~~~~~~~~~~~l~~~~~a~~~~~~~~-~~gkvvv~~  326 (326)
T cd08289         292 QLLNEIKQEITLDELPEALKQILQGR-VTGRTVVKL  326 (326)
T ss_pred             ccccccceEeeHHHHHHHHHHHhcCc-ccceEEEeC
Confidence             1224578899999999999999887 458998763

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.16  E-value=1.1e-09  Score=73.56  Aligned_cols=105  Identities=23%  Similarity=0.237  Sum_probs=72.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC---ccc----cCh--hhh-hhcCeeEEeEec--cC----CCHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ---MVS----VPL--VNA-CAKEIDILSCFR--YV----NDYPDA   64 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~---~~~----~~~--~~~-~~~~~~l~g~~~--~~----~~~~~~   64 (112)
                      +|+++||+|+.. +..++++++++|+++.+|....   +..    ++.  ..+ ..++++..+...  ..    +.++++
T Consensus       225 vd~vid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (345)
T cd08293         225 VDVYFDNVGGEI-SDTVISQMNENSHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFEEAIAQL  303 (345)
T ss_pred             ceEEEECCCcHH-HHHHHHHhccCCEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEEEeeccHhHHHHHHHHH
Confidence            589999998764 7899999999999999985321   111    111  111 123444333321  11    346678


Q ss_pred             HHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         65 LEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        65 ~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ++++.+|++++.  ....++++++.+|++.+.+++ ..+|+|+.+
T Consensus       304 ~~l~~~g~i~~~--~~~~~~l~~~~~A~~~~~~~~-~~gkvvl~~  345 (345)
T cd08293         304 SQWVKEGKLKVK--ETVYEGLENAGEAFQSMMNGG-NIGKQIVKV  345 (345)
T ss_pred             HHHHHCCCccce--eEEeecHHHHHHHHHHHhcCC-CCCeEEEEC
Confidence            889999988765  334569999999999999887 459999864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.15  E-value=6.8e-10  Score=73.75  Aligned_cols=103  Identities=14%  Similarity=0.148  Sum_probs=76.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC---CC----HHHHHHHHHcCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV---ND----YPDALEMVASGK   72 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~---~~----~~~~~~~~~~g~   72 (112)
                      +|+++||+|. ..+..++++++++|+++.+|.... +..+++..++.+++++.+.....   ..    ++.+.+++.++.
T Consensus       214 ~d~vi~~~~~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (325)
T cd05280         214 WAGAIDTVGG-DVLANLLKQTKYGGVVASCGNAAGPELTTTVLPFILRGVSLLGIDSVNCPMELRKQVWQKLATEWKPDL  292 (325)
T ss_pred             ccEEEECCch-HHHHHHHHhhcCCCEEEEEecCCCCccccccchheeeeeEEEEEEeecCchhHHHHHHHHHHHHHhcCC
Confidence            5899999987 568999999999999999997553 34555556667899988876422   22    233444445552


Q ss_pred             CCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         73 CPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        73 ~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      .   +.+.++|+++++++|++.+.+++ ..+|++++
T Consensus       293 ~---~~~~~~~~~~~~~~a~~~~~~~~-~~gk~vv~  324 (325)
T cd05280         293 L---EIVVREISLEELPEAIDRLLAGK-HRGRTVVK  324 (325)
T ss_pred             c---cceeeEecHHHHHHHHHHHhcCC-cceEEEEe
Confidence            2   23667899999999999999888 45898875

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.14  E-value=1.2e-09  Score=72.79  Aligned_cols=104  Identities=18%  Similarity=0.207  Sum_probs=83.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|+++|++|. ..+..++++++++|+++.+|.... ....+...++.+++++.++.... ..+.++++++.++.+++  +
T Consensus       230 ~d~~i~~~~~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~--~  306 (336)
T cd08276         230 VDHVVEVGGP-GTLAQSIKAVAPGGVISLIGFLSGFEAPVLLLPLLTKGATLRGIAVGSRAQFEAMNRAIEAHRIRP--V  306 (336)
T ss_pred             CcEEEECCCh-HHHHHHHHhhcCCCEEEEEccCCCCccCcCHHHHhhcceEEEEEecCcHHHHHHHHHHHHcCCccc--c
Confidence            5899999974 568899999999999999997554 33455667788999999987543 68889999999887754  3


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      .++.+++++++++++.+.++. ..+|+++.
T Consensus       307 ~~~~~~~~~~~~a~~~~~~~~-~~~kvv~~  335 (336)
T cd08276         307 IDRVFPFEEAKEAYRYLESGS-HFGKVVIR  335 (336)
T ss_pred             cCcEEeHHHHHHHHHHHHhCC-CCceEEEe
Confidence            567899999999999998876 45888875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.13  E-value=9.2e-10  Score=73.49  Aligned_cols=103  Identities=20%  Similarity=0.289  Sum_probs=82.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|+++||++....+..++++++++|+++.+|.... ...++...++.++.++.++..+. ..++++++++.++.+++   
T Consensus       226 ~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~---  302 (330)
T cd08245         226 ADVILVTVVSGAAAEAALGGLRRGGRIVLVGLPESPPFSPDIFPLIMKRQSIAGSTHGGRADLQEALDFAAEGKVKP---  302 (330)
T ss_pred             CCEEEECCCcHHHHHHHHHhcccCCEEEEECCCCCCccccchHHHHhCCCEEEEeccCCHHHHHHHHHHHHcCCCcc---
Confidence            58999998877888999999999999999986543 22333455778888888887654 77888999999998864   


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      ..+.++++++.+|++.+.++. ..+|+|+
T Consensus       303 ~~~~~~~~~~~~a~~~~~~~~-~~~~~v~  330 (330)
T cd08245         303 MIETFPLDQANEAYERMEKGD-VRFRFVL  330 (330)
T ss_pred             eEEEEcHHHHHHHHHHHHcCC-CCcceeC
Confidence            346799999999999998877 4477764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.13  E-value=1.3e-09  Score=72.57  Aligned_cols=105  Identities=22%  Similarity=0.308  Sum_probs=83.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|++++++|. ..+..++++++++|+++.+|.... ...++....+.+++++.+..... ..+.++++++.++.+++  +
T Consensus       236 ~d~~i~~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~  312 (342)
T cd08266         236 VDVVVEHVGA-ATWEKSLKSLARGGRLVTCGATTGYEAPIDLRHVFWRQLSILGSTMGTKAELDEALRLVFRGKLKP--V  312 (342)
T ss_pred             CcEEEECCcH-HHHHHHHHHhhcCCEEEEEecCCCCCCCcCHHHHhhcceEEEEEecCCHHHHHHHHHHHHcCCccc--c
Confidence            5899999976 458889999999999999986543 33455545677888888877544 67888999999998754  4


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +++.|+++++++|++.+.++. ..+|+++.+
T Consensus       313 ~~~~~~~~~~~~a~~~~~~~~-~~~kvv~~~  342 (342)
T cd08266         313 IDSVFPLEEAAEAHRRLESRE-QFGKIVLTP  342 (342)
T ss_pred             eeeeEcHHHHHHHHHHHHhCC-CCceEEEeC
Confidence            778899999999999998876 458998753

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.13  E-value=4.6e-10  Score=73.67  Aligned_cols=106  Identities=18%  Similarity=0.162  Sum_probs=84.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecC---CCc-cc---cChhhhhhcCeeEEeEeccC-------CCHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMG---PQM-VS---VPLVNACAKEIDILSCFRYV-------NDYPDALE   66 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~---~~~-~~---~~~~~~~~~~~~l~g~~~~~-------~~~~~~~~   66 (112)
                      .|+.||++|+ ..+.+.+..|+..+|+..+|.-   +.+ .+   -.+..++.+.+++.|+....       +-.+++..
T Consensus       220 IDvyfeNVGg-~v~DAv~~~ln~~aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~  298 (340)
T COG2130         220 IDVYFENVGG-EVLDAVLPLLNLFARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGG  298 (340)
T ss_pred             eEEEEEcCCc-hHHHHHHHhhccccceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhhhhhHHHHHHHHH
Confidence            4899999987 5699999999999999999942   222 11   12356888999999987521       45678999


Q ss_pred             HHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         67 MVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        67 ~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      |+.+|+++.+.  +-+=-|+.+++||.-+.+|+ +.||.|+.+.
T Consensus       299 wv~~GKi~~~e--ti~dGlEnaP~Af~gLl~G~-N~GK~vvKv~  339 (340)
T COG2130         299 WVKEGKIQYRE--TIVDGLENAPEAFIGLLSGK-NFGKLVVKVA  339 (340)
T ss_pred             HHHcCceeeEe--eehhhhhccHHHHHHHhcCC-ccceEEEEec
Confidence            99999998864  33346999999999999999 8899999864

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.12  E-value=1.1e-09  Score=73.10  Aligned_cols=102  Identities=17%  Similarity=0.099  Sum_probs=79.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCc-cccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQM-VSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~-~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|+++++++....+..++++++++|+++.+|..... ..+++.. +.++..+.++.... ..+.++++++.++.+++   
T Consensus       226 vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~l~~~~~l~~---  301 (329)
T cd08298         226 LDAAIIFAPVGALVPAALRAVKKGGRVVLAGIHMSDIPAFDYEL-LWGEKTIRSVANLTRQDGEEFLKLAAEIPIKP---  301 (329)
T ss_pred             ccEEEEcCCcHHHHHHHHHHhhcCCEEEEEcCCCCCCCccchhh-hhCceEEEEecCCCHHHHHHHHHHHHcCCCCc---
Confidence            588999887778899999999999999998854322 2233333 45777788877544 67889999999998765   


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      .++.|+++++.+|++.+.+++ ..+|+++
T Consensus       302 ~~~~~~~~~~~~a~~~~~~~~-~~~~~v~  329 (329)
T cd08298         302 EVETYPLEEANEALQDLKEGR-IRGAAVL  329 (329)
T ss_pred             eEEEEeHHHHHHHHHHHHcCC-CcceeeC
Confidence            357899999999999999877 4588763

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.12  E-value=1.5e-09  Score=72.23  Aligned_cols=104  Identities=21%  Similarity=0.295  Sum_probs=80.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|++++|+|... ...++++++++|+++.+|.... ...++......++.++.++.... ..+.++++++.++.+++  +
T Consensus       227 ~d~v~~~~g~~~-~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~  303 (332)
T cd08259         227 ADVVIELVGSPT-IEESLRSLNKGGRLVLIGNVTPDPAPLRPGLLILKEIRIIGSISATKADVEEALKLVKEGKIKP--V  303 (332)
T ss_pred             CCEEEECCChHH-HHHHHHHhhcCCEEEEEcCCCCCCcCCCHHHHHhCCcEEEEecCCCHHHHHHHHHHHHcCCCcc--c
Confidence            589999998755 7889999999999999986543 22234444446787777776443 67889999999998754  4


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      ++++|+++++++|++.+.++. ..+|++++
T Consensus       304 ~~~~~~~~~~~~a~~~~~~~~-~~~kvv~~  332 (332)
T cd08259         304 IDRVVSLEDINEALEDLKSGK-VVGRIVLK  332 (332)
T ss_pred             eeEEEcHHHHHHHHHHHHcCC-cccEEEeC
Confidence            778899999999999999877 45888763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.12  E-value=5e-10  Score=74.65  Aligned_cols=107  Identities=15%  Similarity=0.170  Sum_probs=75.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCc-cccChhhhhhcCe------eEEeEeccC----CCHHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQM-VSVPLVNACAKEI------DILSCFRYV----NDYPDALEMVA   69 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~-~~~~~~~~~~~~~------~l~g~~~~~----~~~~~~~~~~~   69 (112)
                      +|+++||+|. .....++++++++|+++.+|..... ..++...+..++.      .+.+.+...    ..+.++++++.
T Consensus       210 ~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  288 (327)
T PRK10754        210 VRVVYDSVGK-DTWEASLDCLQRRGLMVSFGNASGPVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIA  288 (327)
T ss_pred             eEEEEECCcH-HHHHHHHHHhccCCEEEEEccCCCCCCCcCHHHHhccCceEEecceeecccCCHHHHHHHHHHHHHHHH
Confidence            4899999986 5578899999999999999965432 2233333332221      122222211    23456889999


Q ss_pred             cCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         70 SGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        70 ~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +|++++..++++.|+++++.++++.+..+. ..+|+|+.+
T Consensus       289 ~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~  327 (327)
T PRK10754        289 SGVIKVDVAEQQKFPLKDAQRAHEILESRA-TQGSSLLIP  327 (327)
T ss_pred             CCCeeeecccCcEEcHHHHHHHHHHHHcCC-CcceEEEeC
Confidence            999876555678899999999999998887 459999863

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.11  E-value=1.8e-09  Score=71.69  Aligned_cols=104  Identities=22%  Similarity=0.291  Sum_probs=80.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-----------CCHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-----------NDYPDALEMV   68 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-----------~~~~~~~~~~   68 (112)
                      +|+++||+|+.. ...++++++++|+++.+|.... +..++...+..++.++.+.....           +.+.++++++
T Consensus       208 ~d~vl~~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  286 (323)
T cd05282         208 ARLALDAVGGES-ATRLARSLRPGGTLVNYGLLSGEPVPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLV  286 (323)
T ss_pred             ceEEEECCCCHH-HHHHHHhhCCCCEEEEEccCCCCCCCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHHHHHHHHHH
Confidence            589999998865 5788999999999999986554 34455555555888888865321           3477889999


Q ss_pred             HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      .++.+++  .+++.|+++++.+|++.+..+. ..+|++++
T Consensus       287 ~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~-~~~kvv~~  323 (323)
T cd05282         287 EAGVLTT--PVGAKFPLEDFEEAVAAAEQPG-RGGKVLLT  323 (323)
T ss_pred             hCCCccc--CccceecHHHHHHHHHHHhcCC-CCceEeeC
Confidence            9998764  3677899999999999998876 45888763

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.11  E-value=1.6e-09  Score=72.58  Aligned_cols=104  Identities=21%  Similarity=0.183  Sum_probs=81.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-----------CCHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-----------NDYPDALEMV   68 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-----------~~~~~~~~~~   68 (112)
                      +|+++||+|+.. +..++++++++|+++.+|.... +..+++..++.++.++.+.....           ..+.++++++
T Consensus       222 ~d~vld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (341)
T cd08290         222 PKLALNCVGGKS-ATELARLLSPGGTMVTYGGMSGQPVTVPTSLLIFKDITLRGFWLTRWLKRANPEEKEDMLEELAELI  300 (341)
T ss_pred             ceEEEECcCcHh-HHHHHHHhCCCCEEEEEeccCCCCcccCHHHHhhCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHH
Confidence            589999998754 6778999999999999986443 44556656678999999876422           2478899999


Q ss_pred             HcCCCCCccceeeee---CcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         69 ASGKCPVRKLITHNF---KLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        69 ~~g~~~~~~~~~~~~---~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      .+|.+++.  ....+   +++++.+|++.+.++. ..+|+|+.
T Consensus       301 ~~~~l~~~--~~~~~~~~~~~~~~~a~~~~~~~~-~~~k~v~~  340 (341)
T cd08290         301 REGKLKAP--PVEKVTDDPLEEFKDALANALKGG-GGGKQVLV  340 (341)
T ss_pred             HcCCccCC--cccccccCCHHHHHHHHHHHhhcC-CCCeEEEe
Confidence            99988654  33456   9999999999998877 45898875

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>KOG0025|consensus

Probab=99.10  E-value=9e-10  Score=72.00  Aligned_cols=106  Identities=19%  Similarity=0.163  Sum_probs=83.8

Q ss_pred             cEEEEcccChHHHHHHHhhccCCcEEEEEecCC-CccccChhhhhhcCeeEEeEeccC------------CCHHHHHHHH
Q psy12355          2 MLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP-QMVSVPLVNACAKEIDILSCFRYV------------NDYPDALEMV   68 (112)
Q Consensus         2 D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~-~~~~~~~~~~~~~~~~l~g~~~~~------------~~~~~~~~~~   68 (112)
                      -+.+||+|+... ....+.|.+||.++.+|... .+++++...++||+++++|+|...            +.+.++.+++
T Consensus       235 rLalNcVGGksa-~~iar~L~~GgtmvTYGGMSkqPv~~~ts~lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~  313 (354)
T KOG0025|consen  235 RLALNCVGGKSA-TEIARYLERGGTMVTYGGMSKQPVTVPTSLLIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLY  313 (354)
T ss_pred             eEEEeccCchhH-HHHHHHHhcCceEEEecCccCCCcccccchheeccceeeeeeeeehhhccCCcHHHHHHHHHHHHHH
Confidence            368999998774 56889999999999998654 589999999999999999999532            3467889999


Q ss_pred             HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      .+|++...  .....||++...|++.....-...+|-++.++
T Consensus       314 ~~G~i~~~--~~e~v~L~~~~tald~~L~~~~~~~Kq~i~~e  353 (354)
T KOG0025|consen  314 RRGKLKAP--NCEKVPLADHKTALDAALSKFGKSGKQIIVLE  353 (354)
T ss_pred             HcCeeccc--cceeeechhhhHHHHHHHHHhccCCceEEEec
Confidence            99988653  23457999999999987766544467666553

>KOG1198|consensus

Probab=99.10  E-value=4.3e-10  Score=76.06  Aligned_cols=106  Identities=19%  Similarity=0.277  Sum_probs=72.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhh----h---cCeeEEe-----Eec--cCCCHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNAC----A---KEIDILS-----CFR--YVNDYPDAL   65 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~----~---~~~~l~g-----~~~--~~~~~~~~~   65 (112)
                      ||+|+||+|++ +...++.++..+|+...++...+ ..+.+...+.    .   ......+     ...  ..+.++.+.
T Consensus       226 ~DvVlD~vg~~-~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  304 (347)
T KOG1198|consen  226 VDVVLDCVGGS-TLTKSLSCLLKGGGGAYIGLVGDELANYKLDDLWQSANGIKLYSLGLKGVNYRWLYFVPSAEYLKALV  304 (347)
T ss_pred             ccEEEECCCCC-ccccchhhhccCCceEEEEeccccccccccccchhhhhhhhheeeeeeccceeeeeecCCHHHHHHHH
Confidence            79999999885 47888999999998777775443 2222211111    1   1111111     111  126788899


Q ss_pred             HHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         66 EMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        66 ~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      +++++|++  .+.+.+.||++++.+|++++.++. ..||+++.++
T Consensus       305 ~~ie~gki--kp~i~~~~p~~~~~ea~~~~~~~~-~~GK~vl~~~  346 (347)
T KOG1198|consen  305 ELIEKGKI--KPVIDSVYPFSQAKEAFEKLEKSH-ATGKVVLEKD  346 (347)
T ss_pred             HHHHcCcc--cCCcceeeeHHHHHHHHHHHhhcC-CcceEEEEec
Confidence            99999966  446888999999999999999866 4599999865

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.10  E-value=1.9e-09  Score=71.82  Aligned_cols=107  Identities=20%  Similarity=0.252  Sum_probs=82.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccc-cChhhhhhcCeeEEeEeccC-----------CCHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVS-VPLVNACAKEIDILSCFRYV-----------NDYPDALEM   67 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~-~~~~~~~~~~~~l~g~~~~~-----------~~~~~~~~~   67 (112)
                      +|+++||+|. ..+..++++++++|+++.+|...+ ... +++..++.++.++.++....           ..+++++++
T Consensus       211 ~d~~i~~~~~-~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (334)
T PTZ00354        211 VNLVLDCVGG-SYLSETAEVLAVDGKWIVYGFMGGAKVEKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFEREVLPY  289 (334)
T ss_pred             ceEEEECCch-HHHHHHHHHhccCCeEEEEecCCCCcccccCHHHHHhhCCEEEeeeccccchhhhHHHHHHHHHHHHHH
Confidence            5899999975 568899999999999999986543 333 66666777877888865322           124678889


Q ss_pred             HHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         68 VASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        68 ~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      +.++.+++  ++++.+++++++++++.+.+++ ..+|+++.+..
T Consensus       290 ~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~-~~~kvvv~~~~  330 (334)
T PTZ00354        290 MEEGEIKP--IVDRTYPLEEVAEAHTFLEQNK-NIGKVVLTVNE  330 (334)
T ss_pred             HHCCCccC--ccccEEcHHHHHHHHHHHHhCC-CCceEEEecCC
Confidence            99998764  4667899999999999998876 45899997753

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.09  E-value=1e-09  Score=73.09  Aligned_cols=99  Identities=26%  Similarity=0.347  Sum_probs=78.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC-CccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP-QMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~-~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|+++||+|. ..+..++++++++|+++.+|... ....+++..+..++.++.+.+.+. +.++++++++...+  +  .
T Consensus       224 ~d~vl~~~g~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~--~  298 (325)
T cd08264         224 ADVVINSLGS-SFWDLSLSVLGRGGRLVTFGTLTGGEVKLDLSDLYSKQISIIGSTGGTRKELLELVKIAKDLK--V--K  298 (325)
T ss_pred             CCEEEECCCH-HHHHHHHHhhccCCEEEEEecCCCCCCccCHHHHhhcCcEEEEccCCCHHHHHHHHHHHHcCC--c--e
Confidence            5899999986 57899999999999999999653 245667777778888888877544 67888999986443  2  3


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEE
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKI  105 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~  105 (112)
                      +++.|+++++++|++.+.++. ..+|+
T Consensus       299 ~~~~~~~~~~~~a~~~~~~~~-~~~kv  324 (325)
T cd08264         299 VWKTFKLEEAKEALKELFSKE-RDGRI  324 (325)
T ss_pred             eEEEEcHHHHHHHHHHHHcCC-Ccccc
Confidence            567899999999999998776 33554

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>KOG1202|consensus

Probab=99.07  E-value=4.4e-10  Score=84.48  Aligned_cols=109  Identities=22%  Similarity=0.285  Sum_probs=86.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccCh-hhhhhcCeeEEeEecc----C--CCHHHHHHHHHcCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPL-VNACAKEIDILSCFRY----V--NDYPDALEMVASGKC   73 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~-~~~~~~~~~l~g~~~~----~--~~~~~~~~~~~~g~~   73 (112)
                      +|+|++.. +.+-++++++||+.+||+..+|-.+-+.+-+. +..+.|+.++.|....    .  ++|++++.++++|.-
T Consensus      1626 VdlVLNSL-aeEkLQASiRCLa~~GRFLEIGKfDLSqNspLGMavfLkNvsfHGiLLDsvmege~e~~~ev~~Lv~eGIk 1704 (2376)
T KOG1202|consen 1626 VDLVLNSL-AEEKLQASIRCLALHGRFLEIGKFDLSQNSPLGMAVFLKNVSFHGILLDSVMEGEEEMWREVAALVAEGIK 1704 (2376)
T ss_pred             eeeehhhh-hHHHHHHHHHHHHhcCeeeeecceecccCCcchhhhhhcccceeeeehhhhhcCcHHHHHHHHHHHHhhhc
Confidence            57888877 56779999999999999999996553333333 3477899999998742    2  678999999988754


Q ss_pred             C--CccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         74 P--VRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        74 ~--~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      .  ..|+.+++|+=.++++||+.+.+|++ -||+|+.+..
T Consensus      1705 sGvV~PL~ttvF~~~qvE~AFRfMasGKH-IGKVvikvr~ 1743 (2376)
T KOG1202|consen 1705 SGVVRPLPTTVFHGQQVEDAFRFMASGKH-IGKVVIKVRA 1743 (2376)
T ss_pred             cCceeccccccccHHHHHHHHHHHhccCc-cceEEEEEcc
Confidence            2  46788999999999999999999994 5999998753

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.06  E-value=1.8e-09  Score=71.97  Aligned_cols=103  Identities=23%  Similarity=0.275  Sum_probs=78.8

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-cc-----ccChhhhhhcCeeEEeEeccC------CCHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MV-----SVPLVNACAKEIDILSCFRYV------NDYPDALEMV   68 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~-----~~~~~~~~~~~~~l~g~~~~~------~~~~~~~~~~   68 (112)
                      +|+++||+|. ..+..++++++++|+++.+|.... +.     .++....+.++.++.+.....      ..+.++++++
T Consensus       215 ~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (329)
T cd05288         215 IDVYFDNVGG-EILDAALTLLNKGGRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWL  293 (329)
T ss_pred             ceEEEEcchH-HHHHHHHHhcCCCceEEEEeeccCcccccccccccHHHHhhCcceEEeecchhhHHHHHHHHHHHHHHH
Confidence            5899999986 568999999999999999986543 21     133455678888888876422      3577889999


Q ss_pred             HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      .+|.+++.+.  ..++++++.++++.+.+++ ..+|+++
T Consensus       294 ~~g~i~~~~~--~~~~l~~~~~a~~~~~~~~-~~gkvvv  329 (329)
T cd05288         294 AEGKLKYRED--VVEGLENAPEAFLGLFTGK-NTGKLVV  329 (329)
T ss_pred             HCCCcccccc--ccccHHHHHHHHHHHhcCC-CccceeC
Confidence            9998876543  4589999999999998876 4578763

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.00  E-value=4.1e-09  Score=70.30  Aligned_cols=105  Identities=15%  Similarity=0.206  Sum_probs=78.8

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCc-----------cccChhhhhhcCeeEEeEecc------CCCHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQM-----------VSVPLVNACAKEIDILSCFRY------VNDYPD   63 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~-----------~~~~~~~~~~~~~~l~g~~~~------~~~~~~   63 (112)
                      +|+++||+|. ..+..++++++++|+++.+|.....           ..++ ...+.++.++.++...      ...+.+
T Consensus       208 vd~v~~~~g~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (329)
T cd08250         208 VDVVYESVGG-EMFDTCVDNLALKGRLIVIGFISGYQSGTGPSPVKGATLP-PKLLAKSASVRGFFLPHYAKLIPQHLDR  285 (329)
T ss_pred             CeEEEECCcH-HHHHHHHHHhccCCeEEEEecccCCcccCccccccccccc-HHHhhcCceEEEEEhHHHHHHHHHHHHH
Confidence            5899999986 6689999999999999999865421           1112 2356788888887532      245778


Q ss_pred             HHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         64 ALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        64 ~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      +++++.++.+++.....+.++++++++|++.+..+. ..+|++++
T Consensus       286 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~kvvv~  329 (329)
T cd08250         286 LLQLYQRGKLVCEVDPTRFRGLESVADAVDYLYSGK-NIGKVVVE  329 (329)
T ss_pred             HHHHHHCCCeeeeECCccccCHHHHHHHHHHHHcCC-CCceEEeC
Confidence            999999998876433455689999999999999877 45888763

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=98.99  E-value=6.4e-09  Score=69.50  Aligned_cols=104  Identities=13%  Similarity=0.056  Sum_probs=77.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-------------CCHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-------------NDYPDALEM   67 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-------------~~~~~~~~~   67 (112)
                      +|+++||+|.+..+..++++++++|+++.+|...  ..+++..+..++.++.+.....             ..+++++++
T Consensus       218 ~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (336)
T cd08252         218 VDYIFCLTDTDQHWDAMAELIAPQGHICLIVDPQ--EPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHEILNEVADL  295 (336)
T ss_pred             CCEEEEccCcHHHHHHHHHHhcCCCEEEEecCCC--CcccchhhhcccceEEEEEeeccccccccchhhHHHHHHHHHHH
Confidence            5899999987778999999999999999998653  3444445556788777644211             236789999


Q ss_pred             HHcCCCCCccc-eeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         68 VASGKCPVRKL-ITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        68 ~~~g~~~~~~~-~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      +.+|.+++... ....++++++++|++.+.++. ..+|+++
T Consensus       296 ~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~vv~  335 (336)
T cd08252         296 LDAGKLKTTLTETLGPINAENLREAHALLESGK-TIGKIVL  335 (336)
T ss_pred             HHCCCEecceeeeecCCCHHHHHHHHHHHHcCC-ccceEEe
Confidence            99998865311 123479999999999999887 4588875

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=98.97  E-value=2.2e-08  Score=65.93  Aligned_cols=105  Identities=17%  Similarity=0.218  Sum_probs=78.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCc-cccChhhhhhcCeeEEeEec----cC-----CCHHHHHHHHHc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQM-VSVPLVNACAKEIDILSCFR----YV-----NDYPDALEMVAS   70 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~-~~~~~~~~~~~~~~l~g~~~----~~-----~~~~~~~~~~~~   70 (112)
                      +|++++|+|+ ..+..++++++++|+++.+|..... ..+++..+..+++++.+...    ..     ..+.++++++.+
T Consensus       206 ~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (320)
T cd05286         206 VDVVYDGVGK-DTFEGSLDSLRPRGTLVSFGNASGPVPPFDLLRLSKGSLFLTRPSLFHYIATREELLARAAELFDAVAS  284 (320)
T ss_pred             eeEEEECCCc-HhHHHHHHhhccCcEEEEEecCCCCCCccCHHHHHhcCcEEEEEehhhhcCCHHHHHHHHHHHHHHHHC
Confidence            5899999987 4688899999999999999865432 23444444477887765431    11     235568888999


Q ss_pred             CCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         71 GKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        71 g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +.+++.  .++.|+++++++|++.+..+. ..+|+++.+
T Consensus       285 ~~l~~~--~~~~~~~~~~~~a~~~~~~~~-~~~~vv~~~  320 (320)
T cd05286         285 GKLKVE--IGKRYPLADAAQAHRDLESRK-TTGKLLLIP  320 (320)
T ss_pred             CCCcCc--ccceEcHHHHHHHHHHHHcCC-CCceEEEeC
Confidence            987653  567899999999999998877 458888764

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=98.96  E-value=8.8e-09  Score=68.13  Aligned_cols=103  Identities=16%  Similarity=0.207  Sum_probs=76.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccc---cChhhh--hhcCeeEEeEeccC---CCHHHHHHHHHcCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVS---VPLVNA--CAKEIDILSCFRYV---NDYPDALEMVASGK   72 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~---~~~~~~--~~~~~~l~g~~~~~---~~~~~~~~~~~~g~   72 (112)
                      +|+++||+|+ ..+..++++++++|+++.+|.......   ......  ..+++++.+.....   ..++++++++.++.
T Consensus       209 ~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (320)
T cd08243         209 FDKVLELVGT-ATLKDSLRHLRPGGIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSSGDVPQTPLQELFDFVAAGH  287 (320)
T ss_pred             ceEEEECCCh-HHHHHHHHHhccCCEEEEEccCCCCcccCCcchhhhhhhccceEEEecchhhhhHHHHHHHHHHHHCCc
Confidence            5899999987 568999999999999999996433211   222222  25677777765332   35788999999998


Q ss_pred             CCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         73 CPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        73 ~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      +++  +.++.++++++++|++.+.++. ..+|+++
T Consensus       288 ~~~--~~~~~~~l~~~~~a~~~~~~~~-~~~kvvv  319 (320)
T cd08243         288 LDI--PPSKVFTFDEIVEAHAYMESNR-AFGKVVV  319 (320)
T ss_pred             eec--ccccEEcHHHHHHHHHHHHhCC-CCCcEEe
Confidence            764  3567899999999999998877 4478775

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=98.91  E-value=3e-08  Score=65.33  Aligned_cols=103  Identities=22%  Similarity=0.284  Sum_probs=78.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-----------CCHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-----------NDYPDALEMV   68 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-----------~~~~~~~~~~   68 (112)
                      +|+++|++|... +..++++++++|+++.+|.... ...+++..++.+++++.++....           ..+.++.+++
T Consensus       209 ~d~vi~~~g~~~-~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (323)
T cd05276         209 VDVILDMVGGDY-LARNLRALAPDGRLVLIGLLGGAKAELDLAPLLRKRLTLTGSTLRSRSLEEKAALAAAFREHVWPLF  287 (323)
T ss_pred             eEEEEECCchHH-HHHHHHhhccCCEEEEEecCCCCCCCCchHHHHHhCCeEEEeeccchhhhccHHHHHHHHHHHHHHH
Confidence            489999998755 7889999999999999986543 34455555667889988876422           1246678888


Q ss_pred             HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      .++.+++  +.++.|++++++++++.+..+. ..+|+++
T Consensus       288 ~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~-~~~kvv~  323 (323)
T cd05276         288 ASGRIRP--VIDKVFPLEEAAEAHRRMESNE-HIGKIVL  323 (323)
T ss_pred             HCCCccC--CcceEEcHHHHHHHHHHHHhCC-CcceEeC
Confidence            8887754  4678899999999999998776 3478763

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=98.89  E-value=3e-08  Score=66.72  Aligned_cols=105  Identities=18%  Similarity=0.126  Sum_probs=71.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccC--CcEEEEEecCCCccccChhhhhhcCeeEEeEec----cC----CCHHHHHHHHHc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKM--GGKLMLVGMGPQMVSVPLVNACAKEIDILSCFR----YV----NDYPDALEMVAS   70 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~--~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~----~~----~~~~~~~~~~~~   70 (112)
                      +|+++|++|++..+..+++++++  +|+++.+|.......++ ...............    ..    ..+.++.+++.+
T Consensus       222 ~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (339)
T cd08249         222 LRYALDCISTPESAQLCAEALGRSGGGKLVSLLPVPEETEPR-KGVKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEE  300 (339)
T ss_pred             eeEEEEeeccchHHHHHHHHHhccCCCEEEEecCCCccccCC-CCceEEEEEeeeecccccccccchHHHHHHHHHHHHc
Confidence            58999999886778999999999  99999998655322111 011111111111110    11    356779999999


Q ss_pred             CCCCCccceeeeeC--cccHHHHHHHHhcCCCCceEEEEe
Q psy12355         71 GKCPVRKLITHNFK--LEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        71 g~~~~~~~~~~~~~--l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      +++++.+.  ..++  ++++++|++.+..++...+|+|++
T Consensus       301 ~~l~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~  338 (339)
T cd08249         301 GKLKPHPV--RVVEGGLEGVQEGLDLLRKGKVSGEKLVVR  338 (339)
T ss_pred             CCccCCCc--eecCCcHHHHHHHHHHHHCCCccceEEEEe
Confidence            98876533  3467  999999999999877234899876

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=98.89  E-value=1.4e-08  Score=67.54  Aligned_cols=71  Identities=20%  Similarity=0.351  Sum_probs=61.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASG   71 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g   71 (112)
                      +|+++||+|....+..++++++++|+++.+|...+ ...++...++++++++.|++.+. ++++++++++++|
T Consensus       234 vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~  306 (306)
T cd08258         234 ADVVIECSGAVPALEQALELLRKGGRIVQVGIFGPLAASIDVERIIQKELSVIGSRSSTPASWETALRLLASG  306 (306)
T ss_pred             CCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCcccCHHHHhhcCcEEEEEecCchHhHHHHHHHHhcC
Confidence            58999999877788999999999999999998653 46667778889999999999865 8899999999875

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=98.87  E-value=3.9e-08  Score=64.84  Aligned_cols=103  Identities=20%  Similarity=0.437  Sum_probs=78.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccc-cChhhhhhcCeeEEeEeccC----------CCHHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVS-VPLVNACAKEIDILSCFRYV----------NDYPDALEMVA   69 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~-~~~~~~~~~~~~l~g~~~~~----------~~~~~~~~~~~   69 (112)
                      +|.++||+|. ..+..++++++++|+++.+|....... ++......++.++.+.....          ..+.++++++.
T Consensus       209 ~d~v~~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (323)
T cd08241         209 VDVVYDPVGG-DVFEASLRSLAWGGRLLVIGFASGEIPQIPANLLLLKNISVVGVYWGAYARREPELLRANLAELFDLLA  287 (323)
T ss_pred             cEEEEECccH-HHHHHHHHhhccCCEEEEEccCCCCcCcCCHHHHhhcCcEEEEEecccccchhHHHHHHHHHHHHHHHH
Confidence            5899999986 557889999999999999987543322 34444567888888765321          34677889999


Q ss_pred             cCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         70 SGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        70 ~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      ++.+++  +.++.|+++++.++++.+..+. ..+|+++
T Consensus       288 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~vvv  322 (323)
T cd08241         288 EGKIRP--HVSAVFPLEQAAEALRALADRK-ATGKVVL  322 (323)
T ss_pred             CCCccc--ccceEEcHHHHHHHHHHHHhCC-CCCcEEe
Confidence            997753  4678899999999999988776 4578775

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=98.84  E-value=6.3e-08  Score=63.91  Aligned_cols=104  Identities=22%  Similarity=0.333  Sum_probs=77.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-------CCHHHHHHHHHcCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-------NDYPDALEMVASGKC   73 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-------~~~~~~~~~~~~g~~   73 (112)
                      +|++++|+|... ....+++++++|+++.+|.......+++..++.++.++.+...+.       ..+.++.+++.++.+
T Consensus       214 ~d~vi~~~~~~~-~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  292 (325)
T cd08253         214 VDVIIEVLANVN-LAKDLDVLAPGGRIVVYGSGGLRGTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGAL  292 (325)
T ss_pred             eEEEEECCchHH-HHHHHHhhCCCCEEEEEeecCCcCCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHHHHHHHCCCc
Confidence            589999998754 688899999999999998754334455555567777777765332       235566778888876


Q ss_pred             CCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      ++  +.++.+++++++++++.+.++. ..+|++++
T Consensus       293 ~~--~~~~~~~~~~~~~~~~~~~~~~-~~~kvv~~  324 (325)
T cd08253         293 RP--VIAREYPLEEAAAAHEAVESGG-AIGKVVLD  324 (325)
T ss_pred             cC--ccccEEcHHHHHHHHHHHHcCC-CcceEEEe
Confidence            54  3667899999999999998876 45898875

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=98.84  E-value=2e-08  Score=65.94  Aligned_cols=99  Identities=23%  Similarity=0.315  Sum_probs=74.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEecc--CCCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY--VNDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~--~~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|+++||+|+. ....++++++++|+++.+|.......    ....++.++......  ...+.++++++.++.++  ++
T Consensus       209 ~d~v~~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  281 (309)
T cd05289         209 VDAVLDTVGGE-TLARSLALVKPGGRLVSIAGPPPAEQ----AAKRRGVRAGFVFVEPDGEQLAELAELVEAGKLR--PV  281 (309)
T ss_pred             ceEEEECCchH-HHHHHHHHHhcCcEEEEEcCCCcchh----hhhhccceEEEEEecccHHHHHHHHHHHHCCCEE--Ee
Confidence            58999999876 57889999999999999986543221    333455555554322  35788899999999764  35


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      +++.|+++++.++++.+..+. ..+|+++
T Consensus       282 ~~~~~~~~~~~~a~~~~~~~~-~~~kvv~  309 (309)
T cd05289         282 VDRVFPLEDAAEAHERLESGH-ARGKVVL  309 (309)
T ss_pred             eccEEcHHHHHHHHHHHHhCC-CCCcEeC
Confidence            778899999999999998876 3477763

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.84  E-value=4.4e-08  Score=65.31  Aligned_cols=103  Identities=19%  Similarity=0.279  Sum_probs=72.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCcc--ccC--h----------hhh--hhcCeeEEeEecc-------
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMV--SVP--L----------VNA--CAKEIDILSCFRY-------   57 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~--~~~--~----------~~~--~~~~~~l~g~~~~-------   57 (112)
                      +|+++||+|+.. +..++++++++|+++.+|......  .++  .          ...  ..++.+..+....       
T Consensus       204 ~d~vl~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  282 (331)
T cd08273         204 VDVVFDGVGGES-YEESYAALAPGGTLVCYGGNSSLLQGRRSLAALGSLLARLAKLKLLPTGRRATFYYVWRDRAEDPKL  282 (331)
T ss_pred             ceEEEECCchHH-HHHHHHHhcCCCEEEEEccCCCCCCccccccchhhhhhhhhhhcceeccceeEEEeechhcccCHHH
Confidence            589999998766 889999999999999999655321  111  1          011  2233333333221       


Q ss_pred             -CCCHHHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         58 -VNDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        58 -~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                       .+.+.++++++.+|.+++  ++++.+++++++++++.+.+++ ..+|+|+
T Consensus       283 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~-~~gkvv~  330 (331)
T cd08273         283 FRQDLTELLDLLAKGKIRP--KIAKRLPLSEVAEAHRLLESGK-VVGKIVL  330 (331)
T ss_pred             HHHHHHHHHHHHHCCCccC--CcceEEcHHHHHHHHHHHHcCC-CcceEEe
Confidence             145778999999998764  4677899999999999998877 4588775

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.82  E-value=1.4e-07  Score=62.88  Aligned_cols=105  Identities=20%  Similarity=0.207  Sum_probs=78.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--cc---------------ccChhhhhhcCeeEEeEecc---C--
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MV---------------SVPLVNACAKEIDILSCFRY---V--   58 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~---------------~~~~~~~~~~~~~l~g~~~~---~--   58 (112)
                      +|+++||+|+. ....++++++++|+++.+|....  ..               .++...++.+++++.++...   .  
T Consensus       207 ~d~v~~~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (337)
T cd08275         207 VDIVLDALGGE-DTRKSYDLLKPMGRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEER  285 (337)
T ss_pred             ceEEEECCcHH-HHHHHHHhhccCcEEEEEeecCCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhhhCh
Confidence            58999999875 57889999999999999986542  11               12224557788888876531   1  


Q ss_pred             ----CCHHHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         59 ----NDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        59 ----~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                          ..+.++++++.++.+++  +.++.|++++++++++.+.++. ..+|+++.+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~kvv~~~  337 (337)
T cd08275         286 ELLTEVMDKLLKLYEEGKIKP--KIDSVFPFEEVGEAMRRLQSRK-NIGKVVLTP  337 (337)
T ss_pred             HHHHHHHHHHHHHHHCCCCCC--ceeeEEcHHHHHHHHHHHHcCC-CcceEEEeC
Confidence                23677888999997754  4667899999999999998877 458988763

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=98.82  E-value=8.1e-08  Score=64.27  Aligned_cols=102  Identities=13%  Similarity=0.138  Sum_probs=72.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEecc-----C--------CCHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY-----V--------NDYPDALEM   67 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~-----~--------~~~~~~~~~   67 (112)
                      +|+++|++|....+..++++++++|+++.++..   ..+++..+..+++++.+....     .        ..+++++++
T Consensus       217 vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  293 (336)
T TIGR02817       217 VSYVFSLTHTDQHFKEIVELLAPQGRFALIDDP---AELDISPFKRKSISLHWEFMFTRSMFQTADMIEQHHLLNRVARL  293 (336)
T ss_pred             CCEEEEcCCcHHHHHHHHHHhccCCEEEEEccc---ccccchhhhhcceEEEEEEeecccccchhhhhhhHHHHHHHHHH
Confidence            589999987777789999999999999988532   234444455555665543211     0        236789999


Q ss_pred             HHcCCCCCccceeeee---CcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         68 VASGKCPVRKLITHNF---KLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        68 ~~~g~~~~~~~~~~~~---~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      +.++.+++  ++++.+   +++++++|++.+.+++. .+|+++.
T Consensus       294 ~~~~~l~~--~~~~~~~~~~~~~~~~a~~~~~~~~~-~gkvvv~  334 (336)
T TIGR02817       294 VDAGKIRT--TLAETFGTINAANLKRAHALIESGKA-RGKIVLE  334 (336)
T ss_pred             HHCCCeec--cchhccCCCCHHHHHHHHHHHHcCCc-cceEEEe
Confidence            99998764  334444   47899999999998874 5888764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=98.81  E-value=1e-07  Score=63.38  Aligned_cols=103  Identities=11%  Similarity=0.154  Sum_probs=77.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-------CCHHHHHHHHHcCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-------NDYPDALEMVASGK   72 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-------~~~~~~~~~~~~g~   72 (112)
                      +|.++|++|. ..+..++..++.+|+++.+|.... +..+++..++.++.++.+.....       +.+.++.+++.++.
T Consensus       213 ~~~~~d~~~~-~~~~~~~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (324)
T cd08288         213 WAGAVDTVGG-HTLANVLAQTRYGGAVAACGLAGGADLPTTVMPFILRGVTLLGIDSVMAPIERRRAAWARLARDLDPAL  291 (324)
T ss_pred             ccEEEECCcH-HHHHHHHHHhcCCCEEEEEEecCCCCCCcchhhhhccccEEEEEEeecccchhhHHHHHHHHHHHhcCC
Confidence            4678999976 457788999999999999997542 33345555667899999875311       24556777787886


Q ss_pred             CCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         73 CPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        73 ~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      +++   +.+.++++++++|++.+.+++ ..+|++++
T Consensus       292 ~~~---i~~~~~~~~~~~a~~~~~~~~-~~~~vvv~  323 (324)
T cd08288         292 LEA---LTREIPLADVPDAAEAILAGQ-VRGRVVVD  323 (324)
T ss_pred             ccc---cceeecHHHHHHHHHHHhcCC-ccCeEEEe
Confidence            643   367899999999999999888 45898875

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.80  E-value=1.2e-07  Score=62.68  Aligned_cols=102  Identities=21%  Similarity=0.265  Sum_probs=75.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEecc------------CCCHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY------------VNDYPDALEMV   68 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~------------~~~~~~~~~~~   68 (112)
                      +|+++||+|.. ....++++++++|+++.+|... +.  +......+++++.+....            ...+.++++++
T Consensus       212 ~d~v~~~~~~~-~~~~~~~~l~~~g~~v~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  287 (326)
T cd08272         212 FDVVFDTVGGE-TLDASFEAVALYGRVVSILGGA-TH--DLAPLSFRNATYSGVFTLLPLLTGEGRAHHGEILREAARLV  287 (326)
T ss_pred             CcEEEECCChH-HHHHHHHHhccCCEEEEEecCC-cc--chhhHhhhcceEEEEEcccccccccchhhHHHHHHHHHHHH
Confidence            58999999874 5788999999999999998653 22  222233677777766522            13467788889


Q ss_pred             HcCCCCCcccee-eeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         69 ASGKCPVRKLIT-HNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        69 ~~g~~~~~~~~~-~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      .++.+++  +++ +.|+++++.++++.+.++. ..+|+++++
T Consensus       288 ~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~vv~~~  326 (326)
T cd08272         288 ERGQLRP--LLDPRTFPLEEAAAAHARLESGS-ARGKIVIDV  326 (326)
T ss_pred             HCCCccc--ccccceecHHHHHHHHHHHHcCC-cccEEEEEC
Confidence            8987653  444 7899999999999998776 458988763

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=98.80  E-value=1.5e-07  Score=62.14  Aligned_cols=104  Identities=21%  Similarity=0.273  Sum_probs=79.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-----------CCHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-----------NDYPDALEMV   68 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-----------~~~~~~~~~~   68 (112)
                      +|++++|+|.. .+..++++++++|+++.+|.... ...+++..++.+++++.+.....           ..+.++++++
T Consensus       209 ~d~~i~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (325)
T TIGR02824       209 VDVILDIVGGS-YLNRNIKALALDGRIVQIGFQGGRKAELDLGPLLAKRLTITGSTLRARPVAEKAAIAAELREHVWPLL  287 (325)
T ss_pred             eEEEEECCchH-HHHHHHHhhccCcEEEEEecCCCCcCCCChHHHHhcCCEEEEEehhhcchhhhHHHHHHHHHHHHHHH
Confidence            48999999864 57889999999999999997542 33556666668999988876321           1245677888


Q ss_pred             HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      .++.+++  +.++.++++++.++++.+.++. ..+|+++.
T Consensus       288 ~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~  324 (325)
T TIGR02824       288 ASGRVRP--VIDKVFPLEDAAQAHALMESGD-HIGKIVLT  324 (325)
T ss_pred             HCCcccC--ccccEEeHHHHHHHHHHHHhCC-CcceEEEe
Confidence            8887754  4677899999999999998876 45888875

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=98.75  E-value=1.3e-07  Score=63.78  Aligned_cols=105  Identities=16%  Similarity=0.102  Sum_probs=72.2

Q ss_pred             CcEEEEcccChHHHHHHHhhcc---CCcEEEEEe-cCCCcc---cc--------Ch----hhhhhcCeeEEeEeccC--C
Q psy12355          1 MMLYLDPLGTENCLTLGINVTK---MGGKLMLVG-MGPQMV---SV--------PL----VNACAKEIDILSCFRYV--N   59 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~---~~G~iv~~g-~~~~~~---~~--------~~----~~~~~~~~~l~g~~~~~--~   59 (112)
                      +|+++||+|.......++++++   ++|+++.++ ....+.   .+        ..    ....++...+.......  .
T Consensus       226 ~d~vl~~~g~~~~~~~~~~~l~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (352)
T cd08247         226 FDLILDCVGGYDLFPHINSILKPKSKNGHYVTIVGDYKANYKKDTFNSWDNPSANARKLFGSLGLWSYNYQFFLLDPNAD  305 (352)
T ss_pred             ceEEEECCCCHHHHHHHHHHhCccCCCCEEEEEeCCCcccccchhhhhccccchhhhhhhhhhcCCCcceEEEEecCCHH
Confidence            5899999988667888999999   999999875 221111   11        01    11223333333322112  3


Q ss_pred             CHHHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355         60 DYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH  108 (112)
Q Consensus        60 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~  108 (112)
                      .++++++++.++.+++  ++++.++++++++|++.+.+++ ..+|+++.
T Consensus       306 ~~~~~~~~~~~~~l~~--~~~~~~~l~~~~~a~~~~~~~~-~~gkvvi~  351 (352)
T cd08247         306 WIEKCAELIADGKVKP--PIDSVYPFEDYKEAFERLKSNR-AKGKVVIK  351 (352)
T ss_pred             HHHHHHHHHhCCCeEe--eeccEecHHHHHHHHHHHHcCC-CCCcEEEe
Confidence            5788999999997753  4677899999999999998877 45898875

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.72  E-value=3.3e-07  Score=60.63  Aligned_cols=105  Identities=20%  Similarity=0.223  Sum_probs=76.8

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEecc-----C----CCHHHHHHHHHc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRY-----V----NDYPDALEMVAS   70 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~-----~----~~~~~~~~~~~~   70 (112)
                      +|++++++|. .....++++++++|+++.+|.... ...++....+.+++++.+....     +    ..++++.+++.+
T Consensus       214 ~d~vi~~~~~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (328)
T cd08268         214 VDVVFDPVGG-PQFAKLADALAPGGTLVVYGALSGEPTPFPLKAALKKSLTFRGYSLDEITLDPEARRRAIAFILDGLAS  292 (328)
T ss_pred             ceEEEECCch-HhHHHHHHhhccCCEEEEEEeCCCCCCCCchHHHhhcCCEEEEEecccccCCHHHHHHHHHHHHHHHHC
Confidence            5899999987 557889999999999999986543 3344544457788887776532     1    234555666777


Q ss_pred             CCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         71 GKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        71 g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +.+++  +.++.|+++++.++++.+.++. ..+|+++++
T Consensus       293 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~vv~~~  328 (328)
T cd08268         293 GALKP--VVDRVFPFDDIVEAHRYLESGQ-QIGKIVVTP  328 (328)
T ss_pred             CCCcC--CcccEEcHHHHHHHHHHHHcCC-CCceEEEeC
Confidence            76654  3567899999999999998776 458988763

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>KOG1196|consensus

Probab=98.66  E-value=1.5e-07  Score=62.05  Aligned_cols=106  Identities=17%  Similarity=0.151  Sum_probs=83.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC---Ccccc---ChhhhhhcCeeEEeEeccC------CCHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP---QMVSV---PLVNACAKEIDILSCFRYV------NDYPDALEMV   68 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~---~~~~~---~~~~~~~~~~~l~g~~~~~------~~~~~~~~~~   68 (112)
                      .|+.||.+|+ ..+.+.+..++.+||++..|+-.   .+.+.   +...++.|++.+.|+....      +-+.++..++
T Consensus       224 IDiYfeNVGG-~~lDavl~nM~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l~~~i  302 (343)
T KOG1196|consen  224 IDIYFENVGG-KMLDAVLLNMNLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFLLPYI  302 (343)
T ss_pred             ceEEEeccCc-HHHHHHHHhhhhccceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechhhhhHHHHHHHHHHH
Confidence            4899999987 55899999999999999999532   12221   3456889999999977532      4467788899


Q ss_pred             HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      .+|+++...-+..  -|+..+.|+.-+.+|+ +.||.++.+.
T Consensus       303 kegKI~y~edi~~--Glen~P~A~vglf~Gk-NvGKqiv~va  341 (343)
T KOG1196|consen  303 KEGKITYVEDIAD--GLENGPSALVGLFHGK-NVGKQLVKVA  341 (343)
T ss_pred             hcCceEEehhHHH--HHhccHHHHHHHhccC-cccceEEEee
Confidence            9999987554433  5999999999999999 7799888764

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=98.65  E-value=2.5e-07  Score=62.24  Aligned_cols=103  Identities=19%  Similarity=0.242  Sum_probs=70.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--c--ccc---------Chhhhhh----cCeeEEeE-ec-cCCCH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--M--VSV---------PLVNACA----KEIDILSC-FR-YVNDY   61 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~--~~~---------~~~~~~~----~~~~l~g~-~~-~~~~~   61 (112)
                      +|+++||+|.. ....++++++++|+++.+|....  .  ..+         .+.....    +...+... .. ....+
T Consensus       228 vd~vi~~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (350)
T cd08248         228 FDVILDTVGGD-TEKWALKLLKKGGTYVTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGFFSPSGSAL  306 (350)
T ss_pred             CCEEEECCChH-HHHHHHHHhccCCEEEEecCCcccccccccccchhhhhHHHHHHHHHHHHhcCCCeeEEEECCCHHHH
Confidence            58999999876 68999999999999999985431  1  111         0011111    11111111 11 12568


Q ss_pred             HHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         62 PDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        62 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      .++++++.+|.+++  ++++.|+++++.+|++.+.++. ..+|+++
T Consensus       307 ~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~-~~~~vv~  349 (350)
T cd08248         307 DELAKLVEDGKIKP--VIDKVFPFEEVPEAYEKVESGH-ARGKTVI  349 (350)
T ss_pred             HHHHHHHhCCCEec--ccceeecHHHHHHHHHHHhcCC-CceEEEe
Confidence            89999999998754  4678899999999999998876 4578876

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>smart00829 PKS_ER Enoylreductase

Probab=98.64  E-value=4e-07  Score=59.05  Aligned_cols=102  Identities=14%  Similarity=0.195  Sum_probs=72.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEec-----c----CCCHHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFR-----Y----VNDYPDALEMVA   69 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~-----~----~~~~~~~~~~~~   69 (112)
                      +|+++|++|. ..+..++++++++|+++.+|....  ...+++.. +.+++++.+...     .    ...+.++++++.
T Consensus       176 ~d~vi~~~~~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (288)
T smart00829      176 VDVVLNSLAG-EFLDASLRCLAPGGRFVEIGKRDIRDNSQLGMAP-FRRNVSYHAVDLDALEEGPDRIRELLAEVLELFA  253 (288)
T ss_pred             cEEEEeCCCH-HHHHHHHHhccCCcEEEEEcCcCCccccccchhh-hcCCceEEEEEHHHhhcChHHHHHHHHHHHHHHH
Confidence            4899999985 668889999999999999986542  23333332 345555555431     1    134677888998


Q ss_pred             cCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         70 SGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        70 ~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      ++.+++.  ..+.|+++++.++++.+..+. ..+|+++
T Consensus       254 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~ivv  288 (288)
T smart00829      254 EGVLRPL--PVTVFPISDVEDAFRYMQQGK-HIGKVVL  288 (288)
T ss_pred             CCCccCc--CceEEcHHHHHHHHHHHhcCC-CcceEeC
Confidence            9987653  457799999999999998876 4477763

Enoylreductase in Polyketide synthases.

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=98.63  E-value=4e-07  Score=59.06  Aligned_cols=102  Identities=14%  Similarity=0.155  Sum_probs=72.8

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCc--cccChhhhhhcCeeEEeEec-----c-----CCCHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQM--VSVPLVNACAKEIDILSCFR-----Y-----VNDYPDALEMV   68 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~--~~~~~~~~~~~~~~l~g~~~-----~-----~~~~~~~~~~~   68 (112)
                      +|+++||+|+. .+..++++++++|+++.+|.....  ..++... +.+++++.....     .     ...+.++++++
T Consensus       180 ~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (293)
T cd05195         180 VDVVLNSLSGE-LLRASWRCLAPFGRFVEIGKRDILSNSKLGMRP-FLRNVSFSSVDLDQLARERPELLRELLREVLELL  257 (293)
T ss_pred             ceEEEeCCCch-HHHHHHHhcccCceEEEeeccccccCCccchhh-hccCCeEEEEeHHHHhhhChHHHHHHHHHHHHHH
Confidence            58999999876 689999999999999999865431  2222222 234445444321     1     13577888999


Q ss_pred             HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      .+++++  ++.+..++++++.++++.+.++. ..+|+++
T Consensus       258 ~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~-~~~~ivv  293 (293)
T cd05195         258 EAGVLK--PLPPTVVPSASEIDAFRLMQSGK-HIGKVVL  293 (293)
T ss_pred             HCCCcc--cCCCeeechhhHHHHHHHHhcCC-CCceecC
Confidence            999775  35667899999999999999877 4477763

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.61  E-value=5.1e-07  Score=59.69  Aligned_cols=104  Identities=23%  Similarity=0.310  Sum_probs=68.1

Q ss_pred             CcEEEEcccC-hHHHHHHHhhccCCcEEEEEecCCCccccC-----hhh-hhhcCeeEEeEeccCCCHHHHHHHHHcCCC
Q psy12355          1 MMLYLDPLGT-ENCLTLGINVTKMGGKLMLVGMGPQMVSVP-----LVN-ACAKEIDILSCFRYVNDYPDALEMVASGKC   73 (112)
Q Consensus         1 ~D~v~d~~g~-~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~-----~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~   73 (112)
                      +|+++||+|. ..........++++|+++.+|.........     ... ...+.+...........+.++++++.++.+
T Consensus       209 ~d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  288 (319)
T cd08267         209 YDVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGPSGLLLVLLLLPLTLGGGGRRLKFFLAKPNAEDLEQLAELVEEGKL  288 (319)
T ss_pred             CcEEEECCCchHHHHHHhhhccCCCCEEEEeccccccccccccccchhhccccceEEEEEecCCHHHHHHHHHHHHCCCe
Confidence            5899999984 233344444599999999999755321111     111 222333322221123678889999999977


Q ss_pred             CCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      ++  ++++.|+++++++|++.+.++. ..+|+++
T Consensus       289 ~~--~~~~~~~~~~i~~a~~~~~~~~-~~~~vvv  319 (319)
T cd08267         289 KP--VIDSVYPLEDAPEAYRRLKSGR-ARGKVVI  319 (319)
T ss_pred             ee--eeeeEEcHHHHHHHHHHHhcCC-CCCcEeC
Confidence            54  4778899999999999998876 4477763

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.59  E-value=5.7e-07  Score=59.61  Aligned_cols=105  Identities=19%  Similarity=0.230  Sum_probs=73.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccC--hhhhhhcCeeEEeEeccC---------CCHHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVP--LVNACAKEIDILSCFRYV---------NDYPDALEMVA   69 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~--~~~~~~~~~~l~g~~~~~---------~~~~~~~~~~~   69 (112)
                      +|++++|+|... ...++++++++|+++.+|.........  ...+.++++.+.+.+...         +.+.++++++.
T Consensus       210 ~d~vi~~~~~~~-~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (325)
T cd08271         210 VDAVLDTVGGET-AAALAPTLAFNGHLVCIQGRPDASPDPPFTRALSVHEVALGAAHDHGDPAAWQDLRYAGEELLELLA  288 (325)
T ss_pred             CcEEEECCCcHh-HHHHHHhhccCCEEEEEcCCCCCcchhHHhhcceEEEEEecccccccchhhHHHHHHHHHHHHHHHH
Confidence            589999998765 567899999999999997443211111  122445555555543221         23567888999


Q ss_pred             cCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         70 SGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        70 ~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ++.+++  +.++.|+++++.++++.+.++. ..+|+++++
T Consensus       289 ~~~i~~--~~~~~~~~~~~~~a~~~~~~~~-~~~kiv~~~  325 (325)
T cd08271         289 AGKLEP--LVIEVLPFEQLPEALRALKDRH-TRGKIVVTI  325 (325)
T ss_pred             CCCeee--ccceEEcHHHHHHHHHHHHcCC-ccceEEEEC
Confidence            998754  3567899999999999998876 458988753

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.47  E-value=5.5e-07  Score=63.78  Aligned_cols=80  Identities=10%  Similarity=0.124  Sum_probs=63.4

Q ss_pred             CcEEEEcccChH-----HH-HHHHhhccCCcEEEEEecCC-Cc--cccChhhhhh-cCeeEEeEeccCCCHH-HHHHHHH
Q psy12355          1 MMLYLDPLGTEN-----CL-TLGINVTKMGGKLMLVGMGP-QM--VSVPLVNACA-KEIDILSCFRYVNDYP-DALEMVA   69 (112)
Q Consensus         1 ~D~v~d~~g~~~-----~~-~~~~~~l~~~G~iv~~g~~~-~~--~~~~~~~~~~-~~~~l~g~~~~~~~~~-~~~~~~~   69 (112)
                      +|++|+|+|.+.     .+ +++++.+++||+++.+|... +.  .+++...++. +++++.|.+..+..++ ++.+++.
T Consensus       249 aDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n~P~~~p~~As~lla  328 (509)
T PRK09424        249 VDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTDLPSRLPTQSSQLYG  328 (509)
T ss_pred             CCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCccceEeECCEEEEEeCCCchhHHHHHHHHHH
Confidence            699999998643     54 99999999999999999853 43  4444455665 8999999997775555 6999999


Q ss_pred             cCCCCCcccee
Q psy12355         70 SGKCPVRKLIT   80 (112)
Q Consensus        70 ~g~~~~~~~~~   80 (112)
                      ++.+++.++++
T Consensus       329 ~~~i~l~~lIt  339 (509)
T PRK09424        329 TNLVNLLKLLC  339 (509)
T ss_pred             hCCccHHHHhc
Confidence            99988877766

>cd08251 polyketide_synthase polyketide synthase

Probab=98.46  E-value=8.2e-07  Score=58.20  Aligned_cols=103  Identities=17%  Similarity=0.295  Sum_probs=70.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhh----hcCeeEEeEeccC-----CCHHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNAC----AKEIDILSCFRYV-----NDYPDALEMVA   69 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~----~~~~~l~g~~~~~-----~~~~~~~~~~~   69 (112)
                      +|+++|+++. .....++++++++|+++.+|....  ...++...+.    ++...+.+.....     +.+.++.+++.
T Consensus       190 ~d~v~~~~~~-~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (303)
T cd08251         190 VDVVINTLSG-EAIQKGLNCLAPGGRYVEIAMTALKSAPSVDLSVLSNNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVE  268 (303)
T ss_pred             ceEEEECCcH-HHHHHHHHHhccCcEEEEEeccCCCccCccChhHhhcCceEEEEehHHhhhhCHHHHHHHHHHHHHHHH
Confidence            5899999964 568889999999999999986542  2223332221    2222222222111     35777889999


Q ss_pred             cCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355         70 SGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI  107 (112)
Q Consensus        70 ~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~  107 (112)
                      +|.+++  +.++.|++++++++++.+.+++ ..+|+++
T Consensus       269 ~g~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~iv~  303 (303)
T cd08251         269 EGELRP--TVSRIFPFDDIGEAYRYLSDRE-NIGKVVV  303 (303)
T ss_pred             CCCccC--CCceEEcHHHHHHHHHHHHhCC-CcceEeC
Confidence            998754  4667899999999999998877 4578763

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.15  E-value=1.3e-05  Score=51.72  Aligned_cols=67  Identities=21%  Similarity=0.348  Sum_probs=52.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccc-cChhhhhhcCeeEEeEeccC-CCHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVS-VPLVNACAKEIDILSCFRYV-NDYPDALEM   67 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~-~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~   67 (112)
                      +|+++|++|....+..++++++++|+++.+|....... ......+.+++++.++..+. .++++++++
T Consensus       202 ~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (271)
T cd05188         202 ADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGTREDFEEALDL  270 (271)
T ss_pred             CCEEEECCCCHHHHHHHHHhcccCCEEEEEccCCCCCCcccHHHHHhcceEEEEeecCCHHHHHHHHhh
Confidence            58999999875668899999999999999997654222 23456788999999998765 577777765

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=97.85  E-value=9.9e-05  Score=48.49  Aligned_cols=96  Identities=10%  Similarity=0.148  Sum_probs=57.5

Q ss_pred             CcEEEE-cc-----cChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeE-eccCCCHHHHHHHHHcCCC
Q psy12355          1 MMLYLD-PL-----GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSC-FRYVNDYPDALEMVASGKC   73 (112)
Q Consensus         1 ~D~v~d-~~-----g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~g~~   73 (112)
                      ||+|+. ++     .....+..+.++|++||++++.+..... ++  ...+.+...+.+. ........++.+++.+..+
T Consensus       147 fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf  223 (272)
T PRK11873        147 VDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG-EL--PEEIRNDAELYAGCVAGALQEEEYLAMLAEAGF  223 (272)
T ss_pred             eeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC-CC--CHHHHHhHHHHhccccCCCCHHHHHHHHHHCCC
Confidence            467773 32     2346789999999999999998764432 11  1222223222222 2222456677777776333


Q ss_pred             -CCccceeeeeCcccHHHHHHHH--hcCC
Q psy12355         74 -PVRKLITHNFKLEEAVEAFKTA--SKKA   99 (112)
Q Consensus        74 -~~~~~~~~~~~l~~~~~a~~~~--~~~~   99 (112)
                       .........+++++..++++.+  .++.
T Consensus       224 ~~v~i~~~~~~~l~~~~~~~~~~~~~~~~  252 (272)
T PRK11873        224 VDITIQPKREYRIPDAREFLEDWGIAPGR  252 (272)
T ss_pred             CceEEEeccceecccHHHHHHHhcccccc
Confidence             3333344568899999999998  5544

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.17  E-value=0.043  Score=38.70  Aligned_cols=39  Identities=18%  Similarity=0.261  Sum_probs=32.3

Q ss_pred             CcEEEEcccChHHHH-HHHhhccCCcEEEEEecCCCcccc
Q psy12355          1 MMLYLDPLGTENCLT-LGINVTKMGGKLMLVGMGPQMVSV   39 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~-~~~~~l~~~G~iv~~g~~~~~~~~   39 (112)
                      +|++++|+|+...+. ..++.+++|+.++.+|..+.++.+
T Consensus       268 aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d~Eid~  307 (425)
T PRK05476        268 GDIFVTATGNKDVITAEHMEAMKDGAILANIGHFDNEIDV  307 (425)
T ss_pred             CCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCCCccCh
Confidence            599999999988776 588999999999999977654433

>TIGR00936 ahcY adenosylhomocysteinase

Probab=93.18  E-value=0.19  Score=35.30  Aligned_cols=34  Identities=12%  Similarity=0.153  Sum_probs=29.9

Q ss_pred             CcEEEEcccChHHHHH-HHhhccCCcEEEEEecCC
Q psy12355          1 MMLYLDPLGTENCLTL-GINVTKMGGKLMLVGMGP   34 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~-~~~~l~~~G~iv~~g~~~   34 (112)
                      +|++|+++|+...+.. .+..+++++.++.+|..+
T Consensus       251 aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~  285 (406)
T TIGR00936       251 GDIFITATGNKDVIRGEHFENMKDGAIVANIGHFD  285 (406)
T ss_pred             CCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCC
Confidence            5899999999888875 889999999999998764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=92.74  E-value=0.5  Score=34.30  Aligned_cols=57  Identities=5%  Similarity=0.042  Sum_probs=38.2

Q ss_pred             CcEEEEcc---cChH---HHHHHHhhccCCcEEEEEecCCC-ccccC--hhhhhh-cCeeEEeEecc
Q psy12355          1 MMLYLDPL---GTEN---CLTLGINVTKMGGKLMLVGMGPQ-MVSVP--LVNACA-KEIDILSCFRY   57 (112)
Q Consensus         1 ~D~v~d~~---g~~~---~~~~~~~~l~~~G~iv~~g~~~~-~~~~~--~~~~~~-~~~~l~g~~~~   57 (112)
                      +|++|+|+   |.+.   ..+..++.+++|+.++.++...+ ..+..  ...... .++++.|....
T Consensus       248 ~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~GGn~E~t~p~~~~~~~~GV~~~gv~nl  314 (511)
T TIGR00561       248 VDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQGGNCEYTKPGEVYTTENQVKVIGYTDL  314 (511)
T ss_pred             CCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCCCCEEEecCceEEEecCCEEEEeeCCc
Confidence            69999999   6544   56778999999999999986543 43332  111222 34777776543

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=92.43  E-value=0.21  Score=34.06  Aligned_cols=34  Identities=24%  Similarity=0.175  Sum_probs=30.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP   34 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~   34 (112)
                      +|+|++|+|.....+.+.+.++.|++.+.++.+.
T Consensus        90 vDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~  123 (325)
T TIGR01532        90 VDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPG  123 (325)
T ss_pred             CCEEEEccchhccHHHHHHHHHcCCeEEEecCCC
Confidence            6999999999888888999999999999998764

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PLN02494 adenosylhomocysteinase

Probab=92.33  E-value=0.2  Score=35.87  Aligned_cols=35  Identities=9%  Similarity=0.126  Sum_probs=30.2

Q ss_pred             CcEEEEcccChHHH-HHHHhhccCCcEEEEEecCCC
Q psy12355          1 MMLYLDPLGTENCL-TLGINVTKMGGKLMLVGMGPQ   35 (112)
Q Consensus         1 ~D~v~d~~g~~~~~-~~~~~~l~~~G~iv~~g~~~~   35 (112)
                      +|++++|+|+...+ ...++.++++|.++.+|.++.
T Consensus       310 ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~  345 (477)
T PLN02494        310 ADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDN  345 (477)
T ss_pred             CCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCCC
Confidence            59999999987754 789999999999999997653

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=92.11  E-value=1.5  Score=29.57  Aligned_cols=53  Identities=8%  Similarity=-0.031  Sum_probs=37.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEe
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCF   55 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~   55 (112)
                      +|+||+|++....-...++.+++++.++.++..++...+  ...-.++++..+..
T Consensus       211 aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~--~~a~~~Gv~~~~~~  263 (296)
T PRK08306        211 IDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGTDF--EYAEKRGIKALLAP  263 (296)
T ss_pred             CCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCcCe--eehhhCCeEEEEEC
Confidence            599999997655456678899999999999876654444  23444556665544

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=91.31  E-value=0.22  Score=30.21  Aligned_cols=35  Identities=9%  Similarity=0.073  Sum_probs=29.8

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ   35 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~   35 (112)
                      +|+|+||+|.-.+...+...+..|-+=|+++.+..
T Consensus        89 vDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~  123 (151)
T PF00044_consen   89 VDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSK  123 (151)
T ss_dssp             ESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-S
T ss_pred             ccEEEeccccceecccccccccccccceeeccccc
Confidence            58999999987778888899999999999987765

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.14  E-value=0.24  Score=31.71  Aligned_cols=30  Identities=13%  Similarity=0.132  Sum_probs=25.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV   30 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~   30 (112)
                      ||.|+-+.+.+..-...++.|++||+++..
T Consensus       139 yD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~P  168 (209)
T COG2518         139 YDRIIVTAAAPEVPEALLDQLKPGGRLVIP  168 (209)
T ss_pred             cCEEEEeeccCCCCHHHHHhcccCCEEEEE
Confidence            688988877777668899999999998865

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=90.97  E-value=0.33  Score=29.34  Aligned_cols=35  Identities=11%  Similarity=0.116  Sum_probs=28.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ   35 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~   35 (112)
                      +|+|+||+|.-.+.+.+-..+..|.+=|+++.+..
T Consensus        88 vDiVie~tG~f~~~~~~~~hl~~GakkViisap~~  122 (149)
T smart00846       88 VDIVVECTGKFTTREKASAHLKAGAKKVIISAPAK  122 (149)
T ss_pred             CeEEEeccccccchHHHHHHHHcCCCEEEeCCCCC
Confidence            59999999875556667788888888888887754

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=89.10  E-value=0.96  Score=25.78  Aligned_cols=30  Identities=7%  Similarity=0.057  Sum_probs=20.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV   30 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~   30 (112)
                      .|+++||++.....+...++|+.|=.++..
T Consensus        60 ~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~   89 (117)
T PF03447_consen   60 IDVVVECTSSEAVAEYYEKALERGKHVVTA   89 (117)
T ss_dssp             -SEEEE-SSCHHHHHHHHHHHHTTCEEEES
T ss_pred             CCEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence            489999987766656577777877776665

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=88.78  E-value=0.75  Score=29.28  Aligned_cols=30  Identities=13%  Similarity=0.000  Sum_probs=23.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV   30 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~   30 (112)
                      ||+|+-...........++.|++||+++..
T Consensus       146 fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        146 YDRIYVTAAGPDIPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             cCEEEECCCcccchHHHHHhhCCCcEEEEE
Confidence            688775444556667889999999998875

>TIGR00438 rrmJ cell division protein FtsJ

Probab=88.75  E-value=1.1  Score=27.75  Aligned_cols=21  Identities=19%  Similarity=0.237  Sum_probs=17.6

Q ss_pred             HHHHHHHhhccCCcEEEEEec
Q psy12355         12 NCLTLGINVTKMGGKLMLVGM   32 (112)
Q Consensus        12 ~~~~~~~~~l~~~G~iv~~g~   32 (112)
                      ..+..+.++|++||+++....
T Consensus       127 ~~l~~~~~~LkpgG~lvi~~~  147 (188)
T TIGR00438       127 LALDIAKEVLKPKGNFVVKVF  147 (188)
T ss_pred             HHHHHHHHHccCCCEEEEEEc
Confidence            467888999999999998653

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=88.40  E-value=0.031  Score=40.65  Aligned_cols=54  Identities=13%  Similarity=-0.007  Sum_probs=32.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEe
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCF   55 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~   55 (112)
                      ||++|+++|........+.....+|.+..+++.......+ .....+++.+.|..
T Consensus       223 ~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~-~~~~gk~v~ViGgg  276 (564)
T PRK12771        223 FDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGE-PPFLGKRVVVIGGG  276 (564)
T ss_pred             CCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccC-CcCCCCCEEEECCh
Confidence            6899999998765555566666677666655432211111 23445677777643

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=88.14  E-value=1  Score=30.75  Aligned_cols=30  Identities=13%  Similarity=0.241  Sum_probs=25.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV   30 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~   30 (112)
                      +|+|+.+.|........++.|+++|+++..
T Consensus       150 fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        150 YDVIFVTVGVDEVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             ccEEEECCchHHhHHHHHHhcCCCCEEEEE
Confidence            689998887777677789999999998874

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=87.77  E-value=1.2  Score=30.76  Aligned_cols=35  Identities=11%  Similarity=0.070  Sum_probs=29.8

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ   35 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~   35 (112)
                      +|+||+|+|.-...+.+-..+..|.+.+.++.+.+
T Consensus        96 vDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~  130 (338)
T PLN02358         96 ADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK  130 (338)
T ss_pred             CCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCC
Confidence            58999999988778888889999999998886654

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=87.64  E-value=0.47  Score=34.09  Aligned_cols=35  Identities=11%  Similarity=0.135  Sum_probs=30.4

Q ss_pred             CcEEEEcccChHHHH-HHHhhccCCcEEEEEecCCC
Q psy12355          1 MMLYLDPLGTENCLT-LGINVTKMGGKLMLVGMGPQ   35 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~-~~~~~l~~~G~iv~~g~~~~   35 (112)
                      +|+++.++|....+. ..++.+++++.++.+|..+.
T Consensus       310 ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~d~  345 (476)
T PTZ00075        310 ADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHFDN  345 (476)
T ss_pred             CCEEEECCCcccccCHHHHhccCCCcEEEEcCCCch
Confidence            599999999887775 79999999999999997753

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=87.52  E-value=0.41  Score=30.58  Aligned_cols=30  Identities=13%  Similarity=0.074  Sum_probs=23.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV   30 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~   30 (112)
                      ||.|+-+.+.+..-...++.|++||+++..
T Consensus       142 fD~I~v~~a~~~ip~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  142 FDRIIVTAAVPEIPEALLEQLKPGGRLVAP  171 (209)
T ss_dssp             EEEEEESSBBSS--HHHHHTEEEEEEEEEE
T ss_pred             cCEEEEeeccchHHHHHHHhcCCCcEEEEE
Confidence            588888777776667899999999999974

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=87.30  E-value=1.7  Score=27.81  Aligned_cols=64  Identities=16%  Similarity=0.051  Sum_probs=39.9

Q ss_pred             HHHHHHhhccCCcEEEEEecCC--CccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCc
Q psy12355         13 CLTLGINVTKMGGKLMLVGMGP--QMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVR   76 (112)
Q Consensus        13 ~~~~~~~~l~~~G~iv~~g~~~--~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~   76 (112)
                      .+..+-+.|+++|.++++|-+.  +..+-+...-+...+.-+.....-++++++.++..+..+...
T Consensus       123 lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~  188 (204)
T PF06080_consen  123 LFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLELE  188 (204)
T ss_pred             HHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCccC
Confidence            5677888999999999999544  333334333332222222221122788888888888776654

The function of this family is unknown.

>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I

Probab=85.33  E-value=1.5  Score=30.08  Aligned_cols=34  Identities=12%  Similarity=0.031  Sum_probs=28.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP   34 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~   34 (112)
                      +|+||||+|.-.+-+.+-..+..|.+.|.++.+.
T Consensus        91 vDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~  124 (327)
T TIGR01534        91 VDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPS  124 (327)
T ss_pred             CCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCC
Confidence            6999999998776777888899999999998764

The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=85.24  E-value=1.6  Score=30.72  Aligned_cols=35  Identities=14%  Similarity=0.040  Sum_probs=29.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ   35 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~   35 (112)
                      +|+||||+|.-..-+.+-..+..|.+.|.++.+.+
T Consensus       151 vDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~  185 (395)
T PLN03096        151 IDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK  185 (395)
T ss_pred             CCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCC
Confidence            69999999987777888889999999999987643

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=85.18  E-value=1.4  Score=27.98  Aligned_cols=30  Identities=17%  Similarity=0.034  Sum_probs=22.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV   30 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~   30 (112)
                      ||+|+-..+.+.......+.|++||+++..
T Consensus       147 fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       147 YDRIYVTAAGPKIPEALIDQLKEGGILVMP  176 (215)
T ss_pred             CCEEEEcCCcccccHHHHHhcCcCcEEEEE
Confidence            577775444455566788999999998865

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=85.15  E-value=1.4  Score=30.23  Aligned_cols=35  Identities=9%  Similarity=-0.027  Sum_probs=29.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ   35 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~   35 (112)
                      +|+||+|+|.-..-+.+-..++.|.+.|.++.+.+
T Consensus        90 vDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~  124 (331)
T PRK15425         90 VDVVAEATGLFLTDETARKHITAGAKKVVMTGPSK  124 (331)
T ss_pred             CCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCC
Confidence            68999999987677778888999999999987654

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=85.02  E-value=1.8  Score=27.40  Aligned_cols=30  Identities=13%  Similarity=0.099  Sum_probs=22.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV   30 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~   30 (112)
                      ||+|+-+.+........++.|++||+++..
T Consensus       143 fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        143 FDAIIVTAAASTIPSALVRQLKDGGVLVIP  172 (205)
T ss_pred             ccEEEEccCcchhhHHHHHhcCcCcEEEEE
Confidence            577775544455556788999999999764

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=84.89  E-value=2.2  Score=26.70  Aligned_cols=30  Identities=13%  Similarity=0.269  Sum_probs=20.3

Q ss_pred             CcEEEEcccC---hHHHHHHHhhccCCcEEEEE
Q psy12355          1 MMLYLDPLGT---ENCLTLGINVTKMGGKLMLV   30 (112)
Q Consensus         1 ~D~v~d~~g~---~~~~~~~~~~l~~~G~iv~~   30 (112)
                      +|.|+...+.   ...+..+.+.|+++|+++..
T Consensus       112 ~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~  144 (198)
T PRK00377        112 FDRIFIGGGSEKLKEIISASWEIIKKGGRIVID  144 (198)
T ss_pred             CCEEEECCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence            5777764432   34577778888888888753

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=84.75  E-value=3.6  Score=26.84  Aligned_cols=35  Identities=17%  Similarity=0.191  Sum_probs=24.5

Q ss_pred             CcEEEEcccCh---HHHHHHHhhccCCcEEEEEecCCC
Q psy12355          1 MMLYLDPLGTE---NCLTLGINVTKMGGKLMLVGMGPQ   35 (112)
Q Consensus         1 ~D~v~d~~g~~---~~~~~~~~~l~~~G~iv~~g~~~~   35 (112)
                      ||+|+-.....   ..+..+.+.|++||+++..|....
T Consensus       180 fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~~~  217 (250)
T PRK00517        180 ADVIVANILANPLLELAPDLARLLKPGGRLILSGILEE  217 (250)
T ss_pred             cCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcHh
Confidence            57777544322   345678889999999999886543

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=84.62  E-value=1.9  Score=29.75  Aligned_cols=34  Identities=21%  Similarity=0.114  Sum_probs=28.8

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP   34 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~   34 (112)
                      +|+||+|+|....-+.+-..+..|.+.|.++.+.
T Consensus        92 vDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~  125 (336)
T PRK13535         92 VDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPG  125 (336)
T ss_pred             CCEEEEccchhhhHHHHHHHHHcCCEEEEecCCc
Confidence            6999999998777777888889888999888664

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=84.13  E-value=3.6  Score=28.33  Aligned_cols=70  Identities=13%  Similarity=0.046  Sum_probs=43.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCCc----cccChhhhhhc-CeeEEeEecc-CCCHHHHHHHHHc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQM----VSVPLVNACAK-EIDILSCFRY-VNDYPDALEMVAS   70 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~----~~~~~~~~~~~-~~~l~g~~~~-~~~~~~~~~~~~~   70 (112)
                      +|+|+||+|.-..-+.+-+.+..+ .+-|+++.+...    +.+....-... +.++.....+ +..+..+++.+.+
T Consensus        90 vdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLap~~kvl~d  166 (335)
T COG0057          90 VDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLAPVAKVLND  166 (335)
T ss_pred             ccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhhHHHHHHHHH
Confidence            489999999766667777778774 788888877643    22233222222 5555555433 3666666666654

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=83.95  E-value=2.2  Score=29.47  Aligned_cols=34  Identities=15%  Similarity=0.174  Sum_probs=28.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP   34 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~   34 (112)
                      +|+||+|+|.-.+...+-..+..|.+.|.++.+.
T Consensus        90 vDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~  123 (343)
T PRK07729         90 IDIVIEATGKFNSKEKAILHVEAGAKKVILTAPG  123 (343)
T ss_pred             CCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCC
Confidence            6999999998777777888888888999888653

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=83.90  E-value=1.9  Score=29.72  Aligned_cols=34  Identities=15%  Similarity=0.045  Sum_probs=29.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP   34 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~   34 (112)
                      +|+||+|+|.......+-..+..|.+.|.++.+.
T Consensus        89 vDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~  122 (334)
T PRK08955         89 CDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPV  122 (334)
T ss_pred             CCEEEEccchhhcHHHHHHHHHCCCEEEEECCCC
Confidence            6999999998777788888899999999988763

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=83.65  E-value=2  Score=29.60  Aligned_cols=35  Identities=14%  Similarity=0.103  Sum_probs=29.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ   35 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~   35 (112)
                      +|+||+|+|....-+.+-..++.|.+.|.++.+.+
T Consensus        91 vDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~  125 (337)
T PTZ00023         91 VDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPK  125 (337)
T ss_pred             CCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCC
Confidence            69999999987777778888889999999887543

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=83.16  E-value=2.3  Score=29.38  Aligned_cols=34  Identities=15%  Similarity=0.104  Sum_probs=28.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP   34 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~   34 (112)
                      +|+||+|+|.-...+.+-..+..|.+.|.++.+.
T Consensus        91 vDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~  124 (337)
T PRK07403         91 IDLIIESTGVFVTKEGASKHIQAGAKKVLITAPG  124 (337)
T ss_pred             CCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCC
Confidence            6999999998777777888888888988888653

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=82.96  E-value=2.6  Score=26.64  Aligned_cols=31  Identities=16%  Similarity=0.008  Sum_probs=22.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG   31 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g   31 (112)
                      ||+|+-............+.|++||+++..-
T Consensus       145 fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~~  175 (212)
T PRK00312        145 FDRILVTAAAPEIPRALLEQLKEGGILVAPV  175 (212)
T ss_pred             cCEEEEccCchhhhHHHHHhcCCCcEEEEEE
Confidence            5777754444555677889999999988653

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=82.84  E-value=1.4  Score=26.45  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=19.0

Q ss_pred             HHHHHHHhhccCCcEEEEEecCCC
Q psy12355         12 NCLTLGINVTKMGGKLMLVGMGPQ   35 (112)
Q Consensus        12 ~~~~~~~~~l~~~G~iv~~g~~~~   35 (112)
                      .++.++++.|++||.++++-+++.
T Consensus        73 ~Al~~al~lL~~gG~i~iv~Y~GH   96 (140)
T PF06962_consen   73 KALEAALELLKPGGIITIVVYPGH   96 (140)
T ss_dssp             HHHHHHHHHEEEEEEEEEEE--ST
T ss_pred             HHHHHHHHhhccCCEEEEEEeCCC
Confidence            368899999999999999987654

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=82.81  E-value=3  Score=26.33  Aligned_cols=35  Identities=20%  Similarity=0.126  Sum_probs=25.8

Q ss_pred             CcEEEEcccC--hHHHHHHHhhccCCcEEEEEecCCC
Q psy12355          1 MMLYLDPLGT--ENCLTLGINVTKMGGKLMLVGMGPQ   35 (112)
Q Consensus         1 ~D~v~d~~g~--~~~~~~~~~~l~~~G~iv~~g~~~~   35 (112)
                      +|.+|---|.  +..++.+++.|+++||+|.-...-+
T Consensus       103 ~daiFIGGg~~i~~ile~~~~~l~~ggrlV~naitlE  139 (187)
T COG2242         103 PDAIFIGGGGNIEEILEAAWERLKPGGRLVANAITLE  139 (187)
T ss_pred             CCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeecHH
Confidence            4677754332  3578999999999999998875444

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=82.66  E-value=2.8  Score=26.83  Aligned_cols=34  Identities=9%  Similarity=0.095  Sum_probs=24.7

Q ss_pred             CcEEEEcccC--------hHHHHHHHhhccCCcEEEEEecCC
Q psy12355          1 MMLYLDPLGT--------ENCLTLGINVTKMGGKLMLVGMGP   34 (112)
Q Consensus         1 ~D~v~d~~g~--------~~~~~~~~~~l~~~G~iv~~g~~~   34 (112)
                      ||.++|+..-        ...+....++|+|||+++.++...
T Consensus       114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~  155 (213)
T TIGR03840       114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY  155 (213)
T ss_pred             cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence            5788886521        234678889999999988887543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=82.57  E-value=1.6  Score=30.35  Aligned_cols=35  Identities=11%  Similarity=0.041  Sum_probs=29.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ   35 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~   35 (112)
                      +|+|+||+|.-.+...+..-|..|.+=|+++.|.+
T Consensus       105 vD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~  139 (361)
T PTZ00434        105 VDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPAS  139 (361)
T ss_pred             CCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCC
Confidence            69999999987777888889988888888876643

>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B

Probab=82.30  E-value=3.1  Score=29.76  Aligned_cols=34  Identities=9%  Similarity=0.002  Sum_probs=29.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP   34 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~   34 (112)
                      +|+||||+|.-.....+-..+..|.+.|.++.+.
T Consensus       166 VDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~  199 (442)
T PLN02237        166 IDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  199 (442)
T ss_pred             CCEEEEccChhhhHHHHHHHHhCCCEEEEECCCC
Confidence            6899999998777788888999999999998653

>PRK00536 speE spermidine synthase; Provisional

Probab=82.23  E-value=2.8  Score=27.88  Aligned_cols=32  Identities=13%  Similarity=-0.064  Sum_probs=25.2

Q ss_pred             CcEEE-EcccChHHHHHHHhhccCCcEEEEEec
Q psy12355          1 MMLYL-DPLGTENCLTLGINVTKMGGKLMLVGM   32 (112)
Q Consensus         1 ~D~v~-d~~g~~~~~~~~~~~l~~~G~iv~~g~   32 (112)
                      ||+|| |++-.++-...+-++|+++|.++.-+.
T Consensus       140 fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~  172 (262)
T PRK00536        140 YDLIICLQEPDIHKIDGLKRMLKEDGVFISVAK  172 (262)
T ss_pred             CCEEEEcCCCChHHHHHHHHhcCCCcEEEECCC
Confidence            57666 666666667888999999999998764

>KOG1661|consensus

Probab=82.03  E-value=2.1  Score=27.67  Aligned_cols=31  Identities=13%  Similarity=0.023  Sum_probs=25.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG   31 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g   31 (112)
                      ||.|.--++.+...+..++.|+++|++++.=
T Consensus       163 YDaIhvGAaa~~~pq~l~dqL~~gGrllip~  193 (237)
T KOG1661|consen  163 YDAIHVGAAASELPQELLDQLKPGGRLLIPV  193 (237)
T ss_pred             cceEEEccCccccHHHHHHhhccCCeEEEee
Confidence            5778877777788889999999999988663

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=81.80  E-value=5.5  Score=27.48  Aligned_cols=68  Identities=15%  Similarity=0.046  Sum_probs=42.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCcc---ccC----hhhhhhcCeeEEeEe-ccCCCHHHHHHHHHc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMV---SVP----LVNACAKEIDILSCF-RYVNDYPDALEMVAS   70 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~---~~~----~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~   70 (112)
                      +|+|++|+|.......+-..++.+-+-+++|.+....   .|.    ......+.  +.... |++..+..+++.+.+
T Consensus        76 vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~~--~vs~aSCtTn~Lap~~~~L~~  151 (333)
T TIGR01546        76 VDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGKD--YVRVVSCNTTGLVRTLNAIND  151 (333)
T ss_pred             CCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcCc--eEEecCchHhhHHHHHHHHHH
Confidence            5999999988766666667777777778888766432   232    22333333  33333 334667777776665

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=81.55  E-value=9.1  Score=23.04  Aligned_cols=68  Identities=10%  Similarity=0.094  Sum_probs=44.0

Q ss_pred             CcEEEEccc--ChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCC
Q psy12355          1 MMLYLDPLG--TENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGK   72 (112)
Q Consensus         1 ~D~v~d~~g--~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~   72 (112)
                      +|+++-+..  .+.++...++..+++..++++|-.   .++.+..+...+++..+... ..+.+.+++.+.+|.
T Consensus        63 aD~viiTGsTlvN~Ti~~iL~~~~~~~~vil~GpS---~~~~P~~l~~~Gv~~v~g~~-v~d~~~~~~~i~~Gg  132 (147)
T PF04016_consen   63 ADVVIITGSTLVNGTIDDILELARNAREVILYGPS---APLHPEALFDYGVTYVGGSR-VVDPEKVLRAISEGG  132 (147)
T ss_dssp             -SEEEEECHHCCTTTHHHHHHHTTTSSEEEEESCC---GGS-GGGGCCTT-SEEEEEE-ES-HHHHHHHHCTTS
T ss_pred             CCEEEEEeeeeecCCHHHHHHhCccCCeEEEEecC---chhhHHHHHhCCCCEEEEEE-EeCHHHHHHHHHcCC
Confidence            467775321  235789999999988888888742   33334456667887766553 567788888888874

; PDB: 3L5O_B 3NPG_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
1e3j_A	352	Ketose Reductase (Sorbitol Dehydrogenase) From Silv		2e-34
3qe3_A	355	Sheep Liver Sorbitol Dehydrogenase Length = 355		9e-16
1pl7_A	356	Human Sorbitol Dehydrogenase (Apo) Length = 356		3e-14
1pl6_A	356	Human SdhNADHINHIBITOR COMPLEX Length = 356		1e-11
3m6i_A	363	L-Arabinitol 4-Dehydrogenase Length = 363		1e-10

>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352

Iteration: 1
 Score =  140 bits (353), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/108 (61%), Positives = 82/108 (75%)
Query: 5   LDPLGTENCLTLGINVTXXXXXXXXXXXXPQMVSVPLVNACAKEIDILSCFRYVNDYPDA 64
           +D  G E C+T+GIN+T             QMV+VPLVNACA+EIDI S FRY NDYP A
Sbjct: 245 IDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDYPIA 304
Query: 65  LEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQG 112
           LEMVASG+C V++L+TH+FKLE+ V+AF+ A KKAD+TIK+MI CRQG
Sbjct: 305 LEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQG 352

>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 9   GTENCLTLGINVTXXXXXXXXXXXXPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
           G E  +  GI  T             +M SVPLV+A  +E+DI   FRY N +P A+ M+
Sbjct: 250 GVETSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAATREVDIKGVFRYCNTWPMAISML 309
Query: 69  ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
           AS    V+ L+TH F LE+A+EAF+T+ K     +K+MI C
Sbjct: 310 ASKSVNVKPLVTHRFPLEKALEAFETSKKGLG--LKVMIKC 348

>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo) Length = 356

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 9   GTENCLTLGINVTXXXXXXXXXXXXPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
           G E  +  GI  T             +M +VPL++A  +E+DI   FRY N +P A+ M+
Sbjct: 251 GAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISML 310
Query: 69  ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
           AS    V+ L+TH F LE+A+EAF+T  K     +KIM+ C
Sbjct: 311 ASKSVNVKPLVTHRFPLEKALEAFETFKKGLG--LKIMLKC 349

>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX Length = 356

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 9   GTENCLTLGINVTXXXXXXXXXXXXPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
           G E  +  GI  T             +  +VPL++A  +E+DI   FRY N +P A+  +
Sbjct: 251 GAEASIQAGIYATRSGGTLVLVGLGSEXTTVPLLHAAIREVDIKGVFRYCNTWPVAISXL 310
Query: 69  ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
           AS    V+ L+TH F LE+A+EAF+T  K     +KI + C
Sbjct: 311 ASKSVNVKPLVTHRFPLEKALEAFETFKKGLG--LKIXLKC 349

>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase Length = 363

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 37  VSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTAS 96
           + +P + A  +E+D+   +RY N +P A+ +V +G   + +L+TH F LE+A++AF+TAS
Sbjct: 289 IQIPFMRASVREVDLQFQYRYCNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETAS 348
Query: 97  KKADDTIKIMIH 108
                 IK+ I 
Sbjct: 349 DPKTGAIKVQIQ 360

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	5e-43
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	1e-39
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	4e-39
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	3e-30
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	1e-28
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	5e-26
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	2e-24
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	6e-22
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	5e-19
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	8e-18
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	3e-12
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	2e-10
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	2e-10
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	3e-10
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	5e-10
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	6e-09
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	9e-05
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	1e-04

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  142 bits (361), Expect = 5e-43
 Identities = 74/104 (71%), Positives = 90/104 (86%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
           G E C+T+GIN+T+ GG LMLVGMG QMV+VPLVNACA+EIDI S FRY NDYP ALEMV
Sbjct: 249 GNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDYPIALEMV 308

Query: 69  ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQG 112
           ASG+C V++L+TH+FKLE+ V+AF+ A KKAD+TIK+MI CRQG
Sbjct: 309 ASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQG 352

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  134 bits (339), Expect = 1e-39
 Identities = 35/100 (35%), Positives = 60/100 (60%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
           G E+ +   I   K GGK+ ++G+G   + +P + A  +E+D+   +RY N +P A+ +V
Sbjct: 261 GVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRASVREVDLQFQYRYCNTWPRAIRLV 320

Query: 69  ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108
            +G   + +L+TH F LE+A++AF+TAS      IK+ I 
Sbjct: 321 ENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQ 360

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  132 bits (335), Expect = 4e-39
 Identities = 46/101 (45%), Positives = 66/101 (65%), Gaps = 2/101 (1%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
           G E  +  GI  T+ GG L+LVG+G +M +VPL++A  +E+DI   FRY N +P A+ M+
Sbjct: 251 GAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISML 310

Query: 69  ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
           AS    V+ L+TH F LE+A+EAF+T  K     +KIM+ C
Sbjct: 311 ASKSVNVKPLVTHRFPLEKALEAFETFKK--GLGLKIMLKC 349

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  109 bits (274), Expect = 3e-30
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 5/105 (4%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNA-CAKEIDILSCF--RYVNDYPDAL 65
           G E  +  G+     GG+  ++G+    +   L      + I        R    +    
Sbjct: 240 GNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGITAFGIAGRRLWQTWMQGT 299

Query: 66  EMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR 110
            +V SG+  +  L+TH   L    EAF      +   +K+++  +
Sbjct: 300 ALVYSGRVDLSPLLTHRLPLSRYREAFGLL--ASGQAVKVILDPK 342

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  105 bits (264), Expect = 1e-28
 Identities = 20/103 (19%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRYVNDYPDALE 66
           G    +     + K GG ++++G+ PQ   V +   +   +E+ +L  F     +  A +
Sbjct: 262 GVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSFINPFVHRRAAD 321

Query: 67  MVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
           +VA+G   + ++I+    L+EA +     +      +K+++  
Sbjct: 322 LVATGAIEIDRMISRRISLDEAPDVISNPAAA--GEVKVLVIP 362

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score = 98.1 bits (245), Expect = 5e-26
 Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 10/109 (9%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVN---ACAKEIDILSCFRYV------N 59
           G    + L + +     +L LVG   Q + +          KE+ ++  +          
Sbjct: 238 GVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQ 297

Query: 60  DYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108
           ++  A  ++   K  +  LI H    E   +A +  ++ A    K+++ 
Sbjct: 298 EWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNA-MPGKVLLI 345

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score = 93.8 bits (234), Expect = 2e-24
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 6/103 (5%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNA-CAKEIDILSCF--RYVNDYPDAL 65
           G    L  G+      G++ L+G+ P  V++   N    K + I           +    
Sbjct: 245 GAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYGITGRHLWETWYTVS 304

Query: 66  EMVASGKCPVRKLITHNFK-LEEAVEAFKTASKKADDTIKIMI 107
            ++ SGK  +  +ITH +K  ++  EAF+    +A  T K++ 
Sbjct: 305 RLLQSGKLNLDPIITHKYKGFDKYEEAFELM--RAGKTGKVVF 345

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score = 87.4 bits (217), Expect = 6e-22
 Identities = 18/106 (16%), Positives = 27/106 (25%), Gaps = 11/106 (10%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGPQM-----VSVPLVNACAKEIDILSCFRY-VNDYP 62
           G        +      G   L+G+                       ++      V  + 
Sbjct: 251 GFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSVNSHVEHFE 310

Query: 63  DA-LEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107
            A +      K  +  L+T    L E   AF       D TIK  I
Sbjct: 311 AATVTFTKLPKWFLEDLVTGVHPLSEFEAAF----DDDDTTIKTAI 352

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score = 79.4 bits (196), Expect = 5e-19
 Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 9/103 (8%)

Query: 14  LTLGINVTKMGGKLMLVGMGPQ----MVSVPLVNACAKEIDILSCFRY-VNDYPDALEMV 68
           L   I +    G L L G        +    L         I+         +  A+  +
Sbjct: 261 LGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLVNGQKPHFQQAVVHL 320

Query: 69  ASGK----CPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107
           AS K       + LIT    + +  E  K   +K    IKI I
Sbjct: 321 ASWKTLYPKAAKMLITKTVSINDEKELLKVLREKEHGEIKIRI 363

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 75.9 bits (187), Expect = 8e-18
 Identities = 15/107 (14%), Positives = 36/107 (33%), Gaps = 9/107 (8%)

Query: 9   GTENCLTLGINVTKMGGK-----LMLVGMGPQMVSVPLVNACAKEIDILSCFRYV--NDY 61
           G    +   I       +     + +V      + +       +   I+    +     +
Sbjct: 291 GVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQIVGSQGHSGHGTF 350

Query: 62  PDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108
           P  + ++ASG   + K+I+    +EE  E  K   +     +K+ + 
Sbjct: 351 PRVISLMASGM-DMTKIISKTVSMEEIPEYIKRL-QTDKSLVKVTML 395

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score = 60.3 bits (147), Expect = 3e-12
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 7/92 (7%)

Query: 5   LDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV---NDY 61
           +D   +E  L++        GK ++VG+    +          EI  +     V   +D+
Sbjct: 245 IDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGS--LVGNQSDF 302

Query: 62  PDALEMVASGKCPVRKLITHNFKLEEAVEAFK 93
              + +  +GK  V+ +IT   KLEEA EA  
Sbjct: 303 LGIMRLAEAGK--VKPMITKTMKLEEANEAID 332

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 5   LDPLGTENCLTLGINVTKMGGKLMLVGM--GPQMVSVPLVNACA--KEIDILSCFRYVND 60
           +   G  +     + + K G  +  V        + +P            I         
Sbjct: 240 VIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPGGR 299

Query: 61  Y--PDALEMVASGKCPVRKLITHNFK-LEEAVEAFKTASKKADDTIKIMI 107
                 +++V   +    KL+TH F+  +   +AF     K  D IK ++
Sbjct: 300 LRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVV 349

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 9   GTENCLTLGINVTKMGGKLMLVGMGP--QMVSVPLVNA-CAKEIDIL-SCFRYVNDYPDA 64
           G    L  G  + + GG   + G+      V   +      K            + +   
Sbjct: 276 GDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFVKT 335

Query: 65  LEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108
           + + +     + KLITH   L+EA +A +    ++ + +K++++
Sbjct: 336 VSITSRNYQLLSKLITHRLPLKEANKALELM--ESREALKVILY 377

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 13/92 (14%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 5   LDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV---NDY 61
            D +G ++ +     V  + G + +VG+     +            +++   Y    ++ 
Sbjct: 244 FDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGFFMIPFGASVVTP--YWGTRSEL 301

Query: 62  PDALEMVASGKCPVRKLITHNFKLEEAVEAFK 93
            + + +  +G+     + T  F L+E   A++
Sbjct: 302 MEVVALARAGRL---DIHTETFTLDEGPAAYR 330

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score = 53.8 bits (130), Expect = 5e-10
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 5   LDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV---NDY 61
           +D +GTE        +    G ++LVGM  + VS+   +       +L         ND 
Sbjct: 243 IDLVGTEETTYNLGKLLAQEGAIILVGMEGKRVSLEAFDTAVWNKKLLGS--NYGSLNDL 300

Query: 62  PDALEMVASGKCPVRKLITHNFKLEEAVEAFK 93
            D + +  SGK    K       L++  +AF 
Sbjct: 301 EDVVRLSESGKI---KPYIIKVPLDDINKAFT 329

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score = 51.1 bits (123), Expect = 6e-09
 Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 5   LDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV---NDY 61
           +D +G++  +     +    G+L++VG G ++   P +   + E+        V    + 
Sbjct: 259 MDFVGSQATVDYTPYLLGRMGRLIIVGYGGEL-RFPTIRVISSEVSFEGS--LVGNYVEL 315

Query: 62  PDALEMVASGKCPVRKLITHNFKLEEAVEAFK 93
            + + +   GK    ++     KL+E  +  +
Sbjct: 316 HELVTLALQGKV---RVEVDIHKLDEINDVLE 344

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score = 38.8 bits (91), Expect = 9e-05
 Identities = 6/49 (12%), Positives = 16/49 (32%), Gaps = 4/49 (8%)

Query: 62  PDALEMVASGK--CPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108
               E +   +     + +      L++A + +    K +    K +I 
Sbjct: 344 RHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYAKFDKGSP--AKFVID 390

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 4/48 (8%), Positives = 13/48 (27%), Gaps = 3/48 (6%)

Query: 62  PDALEMVASGKC-PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108
              ++ +   +      +      L++A   +           K +I 
Sbjct: 345 RALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGVP--KKFVID 390

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	99.85
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	99.85
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	99.85
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	99.84
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	99.82
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	99.81
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	99.81
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	99.79
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	99.78
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	99.78
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	99.78
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	99.77
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	99.77
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	99.77
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	99.77
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	99.77
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	99.77
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	99.77
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	99.77
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	99.76
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	99.75
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	99.75
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	99.74
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	99.74
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	99.73
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	99.73
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	99.73
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	99.72
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	99.72
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	99.72
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	99.72
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	99.71
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	99.71
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	99.71
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	99.7
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	99.7
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	99.7
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	99.69
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	99.68
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	99.68
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	99.68
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	99.68
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	99.67
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.67
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	99.67
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	99.67
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	99.66
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	99.66
4eye_A	342	Probable oxidoreductase; structural genomics, niai	99.66
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	99.65
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	99.65
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	99.64
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	99.64
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	99.62
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	99.62
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	99.62
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	99.62
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	99.61
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	99.61
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	99.6
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	99.59
3gms_A	340	Putative NADPH:quinone reductase; structural genom	99.57
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.57
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	99.56
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	99.54
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	99.54
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.48
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	99.45
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	99.36
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.18
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	98.59
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.36
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.04
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.77
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.66
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.38
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.07
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	92.73
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	90.43
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	89.99
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	89.67
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	89.15
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	88.64
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	88.39
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	88.24
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	88.21
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	86.48
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	85.68
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	85.3
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	84.34
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	84.32
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	83.79
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	83.42
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	83.14
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	83.09
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	82.78
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	82.67
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	82.62
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	82.58
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	81.54
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	81.26
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	80.93
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	80.88
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	80.85
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	80.69
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	80.69
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	80.49
3cvo_A	202	Methyltransferase-like protein of unknown functio;	80.48
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	80.09

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=99.85  E-value=1.5e-20  Score=125.58  Aligned_cols=112  Identities=67%  Similarity=1.114  Sum_probs=99.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCcccee
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLIT   80 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~~~   80 (112)
                      +|++|||+|.+.++..++++++++|+++.+|....+.++++..++.+++++.|++.+..+++++++++.+|++++.++++
T Consensus       241 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~l~~~g~i~~~~~i~  320 (352)
T 1e3j_A          241 PNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDYPIALEMVASGRCNVKQLVT  320 (352)
T ss_dssp             CSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCHHHHHTTTCEEEECCSCSSCHHHHHHHHHTTSCCCGGGEE
T ss_pred             CCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCccccHHHHHhcCcEEEEeccchHHHHHHHHHHHcCCCChHHhee
Confidence            69999999998889999999999999999997655667778889999999999987778899999999999998888999


Q ss_pred             eeeCcccHHHHHHHHhcCCCCceEEEEeeCCC
Q psy12355         81 HNFKLEEAVEAFKTASKKADDTIKIMIHCRQG  112 (112)
Q Consensus        81 ~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~~  112 (112)
                      ++|||+++++||+.+.+++...+|+|+.++++
T Consensus       321 ~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~~  352 (352)
T 1e3j_A          321 HSFKLEQTVDAFEAARKKADNTIKVMISCRQG  352 (352)
T ss_dssp             EEEEGGGHHHHHHHHHHCCTTCSEEEEECCC-
T ss_pred             EEecHHHHHHHHHHHhcCCCCceEEEEecCCC
Confidence            99999999999999998862249999998865

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=99.85  E-value=1.1e-20  Score=126.69  Aligned_cols=111  Identities=32%  Similarity=0.630  Sum_probs=100.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCcccee
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLIT   80 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~~~   80 (112)
                      +|++|||+|.+.++..++++++++|+++.+|.......++...++.+++++.+++.+.++++++++++++|++++.++++
T Consensus       253 ~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~l~~~g~i~~~~~i~  332 (363)
T 3m6i_A          253 PAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRASVREVDLQFQYRYCNTWPRAIRLVENGLVDLTRLVT  332 (363)
T ss_dssp             CSEEEECSCCHHHHHHHHHHSCTTCEEEECCCCCSCCCCCHHHHHHHTCEEEECCSCSSCHHHHHHHHHTTSSCCGGGEE
T ss_pred             CCEEEECCCChHHHHHHHHHhcCCCEEEEEccCCCCccccHHHHHhcCcEEEEccCCHHHHHHHHHHHHhCCCChHHcee
Confidence            69999999998889999999999999999998777677888889999999999987788999999999999999999999


Q ss_pred             eeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         81 HNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        81 ~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      ++|||+++++||+.+.+++...+|+|+..++
T Consensus       333 ~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~  363 (363)
T 3m6i_A          333 HRFPLEDALKAFETASDPKTGAIKVQIQSLE  363 (363)
T ss_dssp             EEEEGGGHHHHHHHHHCGGGCCSEEEEECC-
T ss_pred             eeeeHHHHHHHHHHHhccCCCeEEEEEecCC
Confidence            9999999999999999873345999998763

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=99.85  E-value=2.8e-20  Score=124.47  Aligned_cols=109  Identities=42%  Similarity=0.730  Sum_probs=98.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCcccee
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLIT   80 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~~~   80 (112)
                      +|++|||+|.+.++..++++++++|+++.+|....+.++++..++.+++++.|++.+..+++++++++.+|++++.++++
T Consensus       243 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~l~~~g~i~~~~~i~  322 (356)
T 1pl8_A          243 PEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVT  322 (356)
T ss_dssp             CSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHHHHHTTCEEEECCSCSSCHHHHHHHHHTTSCCCGGGEE
T ss_pred             CCEEEECCCChHHHHHHHHHhcCCCEEEEEecCCCCCccCHHHHHhcceEEEEecccHHHHHHHHHHHHcCCCChHHheE
Confidence            69999999998889999999999999999998655667788889999999999987778899999999999998888999


Q ss_pred             eeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         81 HNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        81 ~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      ++|||+++++||+.+.++.  .+|+|+.+++
T Consensus       323 ~~~~l~~~~~A~~~~~~~~--~gKvvi~~~~  351 (356)
T 1pl8_A          323 HRFPLEKALEAFETFKKGL--GLKIMLKCDP  351 (356)
T ss_dssp             EEEEGGGHHHHHHHHHTTC--CSEEEEECCT
T ss_pred             EEecHHHHHHHHHHHhCCC--ceEEEEeCCC
Confidence            9999999999999998873  4999999865

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=99.84  E-value=1.1e-20  Score=127.08  Aligned_cols=110  Identities=17%  Similarity=0.341  Sum_probs=98.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|++|||+|.+.++.+++++++++|+++.+|....  +.+++...++.+++++.|++.+..+++++++++++|++++.++
T Consensus       254 ~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~l~~~g~i~~~~~  333 (370)
T 4ej6_A          254 VDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSFINPFVHRRAADLVATGAIEIDRM  333 (370)
T ss_dssp             EEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCCTTCCCCCCHHHHHHTTCEEEECCSCTTCHHHHHHHHHTTCSCCGGG
T ss_pred             CCEEEECCCCHHHHHHHHHHhccCCEEEEEeccCCCCccccCHHHHHhCCcEEEEeccChHHHHHHHHHHHcCCCChhHc
Confidence            58999999988889999999999999999997654  5678888899999999999988888999999999999999999


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      ++++|||+++++||+.+.+++...+|++++++
T Consensus       334 i~~~~~l~~~~~A~~~~~~~~~~~~kvv~~~~  365 (370)
T 4ej6_A          334 ISRRISLDEAPDVISNPAAAGEVKVLVIPSAE  365 (370)
T ss_dssp             EEEEECGGGHHHHHHSCCCTTCSEEEECCC--
T ss_pred             EEEEEEHHHHHHHHHHHHcCCCCeEEEEEccc
Confidence            99999999999999999888754588888774

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=99.82  E-value=6.3e-20  Score=122.13  Aligned_cols=108  Identities=19%  Similarity=0.284  Sum_probs=94.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCcc---ccChhhhhhcCeeEEeEeccC------CCHHHHHHHHHcC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMV---SVPLVNACAKEIDILSCFRYV------NDYPDALEMVASG   71 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~---~~~~~~~~~~~~~l~g~~~~~------~~~~~~~~~~~~g   71 (112)
                      +|+++||+|.+.++.+++++++++|+++.+|....+.   .+++..++.|++++.|++...      ++++++++++++|
T Consensus       230 ~d~v~d~~G~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~~~~~~~~~~~~~~~~~~~l~~~g  309 (346)
T 4a2c_A          230 NQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTER  309 (346)
T ss_dssp             SEEEEECSCSHHHHHHHHHHCCTTCEEEECCCCSSCEEECHHHHHHHHHHTCEEEECCTTCCSSTTCHHHHHHHHHHHTT
T ss_pred             cccccccccccchhhhhhheecCCeEEEEEeccCCCccccccCHHHHhhceeEEEEEeccccCcchHHHHHHHHHHHHcC
Confidence            5899999999999999999999999999999876543   345567889999999987421      4689999999999


Q ss_pred             CCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         72 KCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        72 ~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +++++++++++|||+|+++||+.+++++. .+|+||.+
T Consensus       310 ~l~~~~lI~~~~~l~~~~~A~~~l~~~~~-~GKvVl~P  346 (346)
T 4a2c_A          310 KLSLEPLIAHRGSFESFAQAVRDIARNAM-PGKVLLIP  346 (346)
T ss_dssp             CSCCGGGEEEEECHHHHHHHHHHHTTSCC-CSEEEECC
T ss_pred             CCCCCccEeEEEeHHHHHHHHHHHHcCCC-ceEEEEEC
Confidence            99999999999999999999999998884 59999864

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=99.81  E-value=1.3e-19  Score=120.76  Aligned_cols=108  Identities=19%  Similarity=0.304  Sum_probs=97.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccCh-hhhhhcCeeEEeEecc--CCCHHHHHHHHHcCCCCCcc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPL-VNACAKEIDILSCFRY--VNDYPDALEMVASGKCPVRK   77 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~-~~~~~~~~~l~g~~~~--~~~~~~~~~~~~~g~~~~~~   77 (112)
                      +|++|||+|.+.++..++++++++|+++.+|.+.++.+++. ..++.+++++.|++.+  ..+++++++++.+|++++.+
T Consensus       232 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~g~~~~~~  311 (343)
T 2dq4_A          232 VEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGITAFGIAGRRLWQTWMQGTALVYSGRVDLSP  311 (343)
T ss_dssp             EEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSSCEEECHHHHTGGGTCEEEECCSCCTTHHHHHHHHHHHHTSSCCGG
T ss_pred             CCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCceeCcHHHHHhCceEEEEeecCCCHHHHHHHHHHHHcCCCChHH
Confidence            58999999998889999999999999999998766677888 7889999999998765  37899999999999988888


Q ss_pred             ceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         78 LITHNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        78 ~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      +++++|||+|+++||+.+.+++ . +|+|+.++
T Consensus       312 ~i~~~~~l~~~~~A~~~~~~~~-~-gKvv~~~~  342 (343)
T 2dq4_A          312 LLTHRLPLSRYREAFGLLASGQ-A-VKVILDPK  342 (343)
T ss_dssp             GEEEEEEGGGHHHHHHHHHHSS-C-SEEEEETT
T ss_pred             heeEEecHHHHHHHHHHHhcCC-c-eEEEEeeC
Confidence            9999999999999999999887 4 99999875

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=99.81  E-value=2.2e-19  Score=119.56  Aligned_cols=107  Identities=14%  Similarity=0.134  Sum_probs=95.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI   79 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~   79 (112)
                      +|+++|++|++.++.+++++++++|+++.+|.+....+++...++.+++++.|++.+. .+++++++++++|++++   +
T Consensus       233 ~d~~~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~gs~~~~~~~~~~~~~l~~~g~i~p---~  309 (348)
T 4eez_A          233 VQSAIVCAVARIAFEQAVASLKPMGKMVAVAVPNTEMTLSVPTVVFDGVEVAGSLVGTRLDLAEAFQFGAEGKVKP---I  309 (348)
T ss_dssp             EEEEEECCSCHHHHHHHHHTEEEEEEEEECCCCSCEEEECHHHHHHSCCEEEECCSCCHHHHHHHHHHHHTTSCCC---C
T ss_pred             ceEEEEeccCcchhheeheeecCCceEEEEeccCCCCccCHHHHHhCCeEEEEEecCCHHHHHHHHHHHHcCCCEE---E
Confidence            4789999999999999999999999999999888778888899999999999998765 78999999999998864   3


Q ss_pred             eeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         80 THNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      +++|||+|+++||+.+++++. .+|+||++++
T Consensus       310 ~~~~~l~~~~~A~~~l~~g~~-~GKvVl~~sk  340 (348)
T 4eez_A          310 VATRKLEEINDIIDEMKAGKI-EGRMVIDFTK  340 (348)
T ss_dssp             EEEECGGGHHHHHHHHHTTCC-SSEEEEECC-
T ss_pred             EEEEeHHHHHHHHHHHHCCCC-ccEEEEEccc
Confidence            478999999999999999984 4899999863

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=99.79  E-value=1e-18  Score=117.63  Aligned_cols=106  Identities=22%  Similarity=0.329  Sum_probs=92.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCCccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCCCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGKCPV   75 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~~~~   75 (112)
                      +|++|||+|.+.++.+++++++++ |+++.+|.+..+.+++...++.++ ++.|++..    .++++++++++.+|++++
T Consensus       266 ~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~  344 (376)
T 1e3i_A          266 VDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVILGR-SINGTFFGGWKSVDSVPNLVSDYKNKKFDL  344 (376)
T ss_dssp             BSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEEHHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCG
T ss_pred             ccEEEECCCCHHHHHHHHHHhhcCCCEEEEECCCCCccccCHHHhhccC-eEEEEecCCCCcHHHHHHHHHHHHcCCCCc
Confidence            599999999988899999999999 999999985556677777888888 99998643    267899999999999998


Q ss_pred             ccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         76 RKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        76 ~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      .++++++|||+|+++||+.+.+++.  +|+|+.+
T Consensus       345 ~~~i~~~~~l~~~~~A~~~~~~~~~--~Kvvi~~  376 (376)
T 1e3i_A          345 DLLVTHALPFESINDAIDLMKEGKS--IRTILTF  376 (376)
T ss_dssp             GGGEEEEEEGGGHHHHHHHHHTTCC--SEEEEEC
T ss_pred             HHhEeeeecHHHHHHHHHHHhcCCc--ceEEEeC
Confidence            8899999999999999999988774  8999875

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=99.78  E-value=6.7e-19  Score=117.59  Aligned_cols=110  Identities=16%  Similarity=0.160  Sum_probs=92.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCc--cccChh--hhhhcCeeEEeEeccC--CCHHHHHHHHHcCCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQM--VSVPLV--NACAKEIDILSCFRYV--NDYPDALEMVASGKCP   74 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~--~~~~~~--~~~~~~~~l~g~~~~~--~~~~~~~~~~~~g~~~   74 (112)
                      +|++|||+|.+.++..++++++++|+++.+|.....  .+++..  .+..+++++.+++...  .+++++++++++|+++
T Consensus       236 ~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~g~i~  315 (352)
T 3fpc_A          236 VDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPGGRLRMERLIDLVFYKRVD  315 (352)
T ss_dssp             EEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSCSEEEEETTTTGGGTBCEEEEEBCCCCHHHHHHHHHHHHHTTSCC
T ss_pred             CCEEEECCCChHHHHHHHHHHhcCCEEEEecccCCCCceecchhHhhhhccccEEEEeeccCchhHHHHHHHHHHcCCCC
Confidence            589999999988899999999999999999976543  333332  2446889999987643  6799999999999999


Q ss_pred             CccceeeeeC-cccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         75 VRKLITHNFK-LEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        75 ~~~~~~~~~~-l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      +.++++++|+ |+|+++||+.+.+++...+|+|+.++
T Consensus       316 ~~~~i~~~~~gl~~~~~A~~~~~~~~~~~~Kvvi~~~  352 (352)
T 3fpc_A          316 PSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA  352 (352)
T ss_dssp             GGGGEEEEEESTTHHHHHHHHHHSCCTTCSEEEEECC
T ss_pred             hhHhheeeCCCHHHHHHHHHHHHhCCCCcEEEEEEeC
Confidence            9999999999 99999999999987755589999863

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=99.78  E-value=8.9e-19  Score=116.85  Aligned_cols=108  Identities=21%  Similarity=0.344  Sum_probs=94.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccCh-hhhhhcCeeEEeEecc--CCCHHHHHHHHHcCCCCCcc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPL-VNACAKEIDILSCFRY--VNDYPDALEMVASGKCPVRK   77 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~-~~~~~~~~~l~g~~~~--~~~~~~~~~~~~~g~~~~~~   77 (112)
                      +|++|||+|.+.++.+++++++++|+++.+|....+..++. ..++.+++++.|++..  ..+++++++++++|++++.+
T Consensus       237 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~g~i~~~~  316 (348)
T 2d8a_A          237 VDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYGITGRHLWETWYTVSRLLQSGKLNLDP  316 (348)
T ss_dssp             EEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSSCCCCCHHHHTTTTTCEEEECCCCCSHHHHHHHHHHHHHTCCCCTT
T ss_pred             CCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCCcccCchHHHHhCCcEEEEecCCCcHHHHHHHHHHHHcCCCChHH
Confidence            58999999988889999999999999999998766667777 7788999999998753  36799999999999998888


Q ss_pred             ceeeeeC-cccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         78 LITHNFK-LEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        78 ~~~~~~~-l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      +++++|| |+|+++||+.+.++.  .+|+|+.++
T Consensus       317 ~i~~~~~gl~~~~~A~~~~~~~~--~gKvvi~~~  348 (348)
T 2d8a_A          317 IITHKYKGFDKYEEAFELMRAGK--TGKVVFMLK  348 (348)
T ss_dssp             TEEEEEESSTTHHHHHHHHHTTC--CSEEEEEC-
T ss_pred             hheeeCCCHHHHHHHHHHHhCCC--ceEEEEeeC
Confidence            9999999 999999999997743  499999864

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=99.78  E-value=2e-18  Score=116.29  Aligned_cols=108  Identities=16%  Similarity=0.199  Sum_probs=92.8

Q ss_pred             CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCC--ccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGKC   73 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~~   73 (112)
                      +|++|||+|.+.++.+++++++++ |+++.+|....  ..+++...++. ++++.|++..    ..+++++++++++|++
T Consensus       264 ~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~-~~~i~g~~~~~~~~~~~~~~~~~l~~~g~l  342 (378)
T 3uko_A          264 VDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRTQVPWLVEKYMNKEI  342 (378)
T ss_dssp             BSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHT-TCEEEECSGGGCCHHHHHHHHHHHHHTTSS
T ss_pred             CCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCCccccCHHHHhc-CcEEEEEEecCCCchHHHHHHHHHHHcCCC
Confidence            699999999988899999999996 99999997653  45566665554 8899998743    2679999999999999


Q ss_pred             CCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      ++.++++++|||+++++||+.+.+++.  .|+|+.+++
T Consensus       343 ~~~~~i~~~~~l~~~~~A~~~~~~g~~--~Kvvi~~~~  378 (378)
T 3uko_A          343 KVDEYITHNLTLGEINKAFDLLHEGTC--LRCVLDTSK  378 (378)
T ss_dssp             CCGGGEEEEEEGGGHHHHHHHTTCTTC--SEEEEETTC
T ss_pred             ChhHheeeEeeHHHHHHHHHHHHCCCc--eEEEEecCC
Confidence            999999999999999999999998874  699999874

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=99.77  E-value=8.7e-19  Score=116.90  Aligned_cols=107  Identities=9%  Similarity=0.148  Sum_probs=94.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC-Cccc-cChhhhh-hcCeeEEeEeccC-CCHHHHHHHHHcCCCCCc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP-QMVS-VPLVNAC-AKEIDILSCFRYV-NDYPDALEMVASGKCPVR   76 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~-~~~~-~~~~~~~-~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~   76 (112)
                      +|++|||+|.+.++.+++++++++|+++.+|.+. .+.+ ++...++ .+++++.|++.+. .+++++++++++|++++ 
T Consensus       235 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~-  313 (348)
T 3two_A          235 LDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIGGIKETQEMVDFSIKHNIYP-  313 (348)
T ss_dssp             EEEEEECCCSCCCHHHHHTTEEEEEEEEECCCCCGGGCCEEEHHHHHHTCSCEEEECCSCCHHHHHHHHHHHHHTTCCC-
T ss_pred             CCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCCcccCCHHHHHhhCCeEEEEEecCCHHHHHHHHHHHHhCCCCc-
Confidence            5899999998868999999999999999999877 5555 7777777 9999999998766 78999999999999876 


Q ss_pred             cceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         77 KLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        77 ~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                       . +++|||+++++||+.+.+++. .+|+|+.+++
T Consensus       314 -~-~~~~~l~~~~~A~~~~~~~~~-~gKvVi~~~~  345 (348)
T 3two_A          314 -E-IDLILGKDIDTAYHNLTHGKA-KFRYVIDMKK  345 (348)
T ss_dssp             -C-EEEECGGGHHHHHHHHHTTCC-CSEEEEEGGG
T ss_pred             -e-EEEEEHHHHHHHHHHHHcCCC-ceEEEEecCC
Confidence             2 479999999999999999884 5899999865

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=99.77  E-value=2.2e-18  Score=114.59  Aligned_cols=107  Identities=17%  Similarity=0.282  Sum_probs=95.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI   79 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~   79 (112)
                      +|++||++|.+.++..++++++++|+++.+|.+.++.+++...++.+++++.|++.+. ++++++++++++|++++   +
T Consensus       233 ~d~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~---~  309 (340)
T 3s2e_A          233 AHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIRGSIVGTRSDLQESLDFAAHGDVKA---T  309 (340)
T ss_dssp             EEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSCCC---C
T ss_pred             CCEEEEeCCCHHHHHHHHHHhccCCEEEEeCCCCCCCCCCHHHHHhCCeEEEEEecCCHHHHHHHHHHHHhCCCCc---e
Confidence            4899999999999999999999999999999877777788888999999999998765 78999999999999876   3


Q ss_pred             eeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         80 THNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      +++++|+++++||+.+.+++. .+|+|+.+++
T Consensus       310 ~~~~~l~~~~~A~~~~~~~~~-~Gkvvv~~~~  340 (340)
T 3s2e_A          310 VSTAKLDDVNDVFGRLREGKV-EGRVVLDFSR  340 (340)
T ss_dssp             EEEECGGGHHHHHHHHHTTCC-CSEEEEECCC
T ss_pred             EEEEeHHHHHHHHHHHHcCCC-ceEEEEecCC
Confidence            567899999999999999884 5999999864

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=99.77  E-value=6.1e-18  Score=113.72  Aligned_cols=106  Identities=11%  Similarity=0.163  Sum_probs=91.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCC--ccccChhhhhhcCeeEEeEecc--C-CCHHHHHHHHHcCCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRY--V-NDYPDALEMVASGKCP   74 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~--~-~~~~~~~~~~~~g~~~   74 (112)
                      +|++|||+|.+.++..++++++++ |+++.+|.+..  +.+++...++.++ ++.|++..  . ++++++++++.+|+++
T Consensus       262 ~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~l~~~g~i~  340 (373)
T 1p0f_A          262 VDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGR-SLKGSVFGGFKGEEVSRLVDDYMKKKIN  340 (373)
T ss_dssp             BSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTC-EEEECSGGGCCGGGHHHHHHHHHTTSSC
T ss_pred             CCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCCCCCccccCHHHhccCc-eEEeeccCCcCHHHHHHHHHHHHcCCCC
Confidence            599999999888899999999999 99999997653  4567777777788 99998642  2 6899999999999999


Q ss_pred             CccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         75 VRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        75 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +.++++++|||+|+++||+.+.+++.  +|+|+.+
T Consensus       341 ~~~~i~~~~~l~~~~~A~~~~~~~~~--~kvvi~~  373 (373)
T 1p0f_A          341 VNFLVSTKLTLDQINKAFELLSSGQG--VRSIMIY  373 (373)
T ss_dssp             GGGGEEEEECGGGHHHHHHHTTTSSC--SEEEEEC
T ss_pred             chheEEEEeeHHHHHHHHHHHHCCCc--ceEEEeC
Confidence            88899999999999999999988774  8999874

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=99.77  E-value=2.3e-18  Score=114.52  Aligned_cols=108  Identities=19%  Similarity=0.293  Sum_probs=94.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI   79 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~   79 (112)
                      +|++|||+|.+.++..++++++++|+++.+|.+.++.+++...++.+++++.|++... ++++++++++.+|++++.   
T Consensus       231 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~---  307 (339)
T 1rjw_A          231 VHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSIVGTRKDLQEALQFAAEGKVKTI---  307 (339)
T ss_dssp             EEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSCCCC---
T ss_pred             CCEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCCccCHHHHHhCCcEEEEeccCCHHHHHHHHHHHHcCCCCcc---
Confidence            5899999998888999999999999999999877666777778889999999987655 789999999999988763   


Q ss_pred             eeeeCcccHHHHHHHHhcCCCCceEEEEeeCCC
Q psy12355         80 THNFKLEEAVEAFKTASKKADDTIKIMIHCRQG  112 (112)
Q Consensus        80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~~  112 (112)
                      +++|||+++++||+.+.+++. .+|+|+.++++
T Consensus       308 ~~~~~l~~~~~A~~~~~~~~~-~gKvvi~~~~~  339 (339)
T 1rjw_A          308 IEVQPLEKINEVFDRMLKGQI-NGRVVLTLEDK  339 (339)
T ss_dssp             EEEEEGGGHHHHHHHHHTTCC-SSEEEEECCCC
T ss_pred             EEEEcHHHHHHHHHHHHcCCC-ceEEEEecCCC
Confidence            578999999999999998873 59999998763

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=99.77  E-value=3.8e-18  Score=114.76  Aligned_cols=106  Identities=17%  Similarity=0.203  Sum_probs=92.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCC-ccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGKCP   74 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~~~   74 (112)
                      +|++|||+|.+.++..++++++++ |+++.+|.+.. +.+++...++.++ ++.|++..    ..+++++++++.+|+++
T Consensus       263 ~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~l~  341 (374)
T 1cdo_A          263 VDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGR-TWKGSMFGGFKGKDGVPKMVKAYLDKKVK  341 (374)
T ss_dssp             BSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSC
T ss_pred             CCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCCCCCCcccCHHHHhcCC-eEEEEecCCCCcHHHHHHHHHHHHcCCCC
Confidence            599999999888899999999999 99999998664 5667777788888 99998643    25789999999999999


Q ss_pred             CccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         75 VRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        75 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +.++++++|||+|+++||+.+.+++.  +|+|+.+
T Consensus       342 ~~~~i~~~~~l~~~~~A~~~~~~~~~--~kvvi~~  374 (374)
T 1cdo_A          342 LDEFITHRMPLESVNDAIDLMKHGKC--IRTVLSL  374 (374)
T ss_dssp             CGGGEEEEEEGGGHHHHHHHHHTTCC--SEEEEEC
T ss_pred             hHHheeeEecHHHHHHHHHHHHCCCe--eEEEEeC
Confidence            88899999999999999999998874  8999875

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=99.77  E-value=4e-18  Score=114.65  Aligned_cols=106  Identities=15%  Similarity=0.237  Sum_probs=92.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCC--ccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGKC   73 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~~   73 (112)
                      +|++|||+|.+.++..++++++++ |+++.+|....  ..+++...++.++ ++.|++..    .++++++++++.+|++
T Consensus       262 ~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~i  340 (374)
T 2jhf_A          262 VDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGR-TWKGAIFGGFKSKDSVPKLVADFMAKKF  340 (374)
T ss_dssp             BSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSS
T ss_pred             CcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCCCCCccccCHHHHhcCC-eEEEeccCCCChHHHHHHHHHHHHcCCC
Confidence            599999999988899999999999 99999997653  4567777788888 99998643    2578999999999999


Q ss_pred             CCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ++.++++++|||+|+++||+.+.+++.  +|+|+.+
T Consensus       341 ~~~~~i~~~~~l~~~~~A~~~~~~~~~--~Kvvi~~  374 (374)
T 2jhf_A          341 ALDPLITHVLPFEKINEGFDLLRSGES--IRTILTF  374 (374)
T ss_dssp             CCGGGEEEEEEGGGHHHHHHHHHTTCC--SEEEEEC
T ss_pred             CchhheEEEEeHHHHHHHHHHHHCCCc--ceEEEeC
Confidence            988899999999999999999988774  8999875

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=99.77  E-value=2.1e-18  Score=115.89  Aligned_cols=107  Identities=19%  Similarity=0.292  Sum_probs=93.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEeccC----CCHHHHHHHHHcCCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRYV----NDYPDALEMVASGKCP   74 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~~----~~~~~~~~~~~~g~~~   74 (112)
                      +|++|||+|.+.++..++++++++|+++.+|....  +.++++..++.+++++.|++...    .+++++++++.+|+++
T Consensus       259 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~l~  338 (371)
T 1f8f_A          259 VNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFP  338 (371)
T ss_dssp             EEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGGSCHHHHHHHHHHHHHTTSCC
T ss_pred             CcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCCCCCccccCHHHHHhCCCEEEEeCCCCCchHHHHHHHHHHHHcCCCC
Confidence            58999999988889999999999999999997653  45677778889999999987532    5789999999999999


Q ss_pred             CccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         75 VRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        75 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      +.+++++ |||+|+++||+.+.+++.  +|+|+.+.
T Consensus       339 ~~~~i~~-~~l~~~~~A~~~~~~~~~--~Kvvv~~~  371 (371)
T 1f8f_A          339 FDQLVKF-YAFDEINQAAIDSRKGIT--LKPIIKIA  371 (371)
T ss_dssp             GGGGEEE-EEGGGHHHHHHHHHHTSC--SEEEEECC
T ss_pred             cccceeE-ecHHHHHHHHHHHHCCCc--eEEEEeeC
Confidence            8888988 999999999999998874  89999763

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=99.77  E-value=1.8e-18  Score=115.25  Aligned_cols=104  Identities=13%  Similarity=0.223  Sum_probs=92.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|++|||+|.+.++.+++++++++|+++.+|.... ..+++. .++.+++++.++..+. ++++++++++++|++++   
T Consensus       240 ~d~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~-~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~---  315 (345)
T 3jv7_A          240 ATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGF-FMIPFGASVVTPYWGTRSELMEVVALARAGRLDI---  315 (345)
T ss_dssp             EEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCTTCCEEEST-TTSCTTCEEECCCSCCHHHHHHHHHHHHTTCCCC---
T ss_pred             CeEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCCCCcCH-HHHhCCCEEEEEecCCHHHHHHHHHHHHcCCCce---
Confidence            58999999998889999999999999999998765 667775 7889999999998765 78999999999999876   


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ++++|+|+++++||+.+.+++. .+|+|+.+
T Consensus       316 ~~~~~~l~~~~~A~~~~~~~~~-~Gkvvv~p  345 (345)
T 3jv7_A          316 HTETFTLDEGPAAYRRLREGSI-RGRGVVVP  345 (345)
T ss_dssp             CEEEECSTTHHHHHHHHHHTCC-SSEEEECC
T ss_pred             EEEEEcHHHHHHHHHHHHcCCC-ceeEEeCC
Confidence            4689999999999999999984 59999864

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=99.76  E-value=4.8e-18  Score=114.16  Aligned_cols=106  Identities=16%  Similarity=0.258  Sum_probs=92.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCC--ccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGKC   73 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~~   73 (112)
                      +|++|||+|.+.++..++++++++ |+++.+|....  +.+++...++.++ ++.|++..    ..+++++++++.+|++
T Consensus       261 ~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~l  339 (373)
T 2fzw_A          261 VDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGR-TWKGTAFGGWKSVESVPKLVSEYMSKKI  339 (373)
T ss_dssp             BSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSS
T ss_pred             CCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCCCCceeeeCHHHHhcCC-EEEEeccCCCCcHHHHHHHHHHHHcCCC
Confidence            599999999988899999999999 99999997653  4567777788888 99998643    2578999999999999


Q ss_pred             CCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ++.++++++|||+++++||+.+.+++.  +|+|+.+
T Consensus       340 ~~~~~i~~~~~l~~~~~A~~~~~~~~~--~kvvi~~  373 (373)
T 2fzw_A          340 KVDEFVTHNLSFDEINKAFELMHSGKS--IRTVVKI  373 (373)
T ss_dssp             CSGGGEEEEEEGGGHHHHHHHHHHTCC--SEEEEEC
T ss_pred             CchheEeEEeeHHHHHHHHHHHhCCCc--ceEEEeC
Confidence            988899999999999999999998874  8999874

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=99.75  E-value=1.4e-18  Score=117.82  Aligned_cols=109  Identities=18%  Similarity=0.230  Sum_probs=93.2

Q ss_pred             CcEEEEcccChH--------------HHHHHHhhccCCcEEEEEecCC-------------CccccChhhhhhcCeeEEe
Q psy12355          1 MMLYLDPLGTEN--------------CLTLGINVTKMGGKLMLVGMGP-------------QMVSVPLVNACAKEIDILS   53 (112)
Q Consensus         1 ~D~v~d~~g~~~--------------~~~~~~~~l~~~G~iv~~g~~~-------------~~~~~~~~~~~~~~~~l~g   53 (112)
                      +|++|||+|.+.              ++.+++++++++|+++.+|...             .+.++++..++.+++++.+
T Consensus       255 ~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~g  334 (398)
T 2dph_A          255 VDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMT  334 (398)
T ss_dssp             EEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCCCSCCSSCSSHHHHTTEEEEEHHHHHHTTCEEEC
T ss_pred             CCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccccccccccccccccCCcccccHHHHhhcCCEEEE
Confidence            589999998753              6899999999999999999762             2345677778899999998


Q ss_pred             EeccC-CCHHHHHHHHHcCCCC--CccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         54 CFRYV-NDYPDALEMVASGKCP--VRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        54 ~~~~~-~~~~~~~~~~~~g~~~--~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      +.... ..++++++++.+|+++  +.++++++|+|+++++||+.+.+++ . +|+|+.++.
T Consensus       335 ~~~~~~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~~~~~A~~~~~~~~-~-gKvvv~~~~  393 (398)
T 2dph_A          335 GMAPVTNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYAKFDKGS-P-AKFVIDPHG  393 (398)
T ss_dssp             SSCCGGGTHHHHHHHHHTTCCHHHHHHHCEEEECSTTHHHHHHHHHTTC-S-CEEEECTTS
T ss_pred             eccCcHHHHHHHHHHHHcCCCCccchhhEEEEEcHHHHHHHHHHHhcCC-c-eEEEEecCc
Confidence            76544 7899999999999998  7778899999999999999999887 4 999998753

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=99.75  E-value=2.5e-18  Score=114.51  Aligned_cols=105  Identities=22%  Similarity=0.229  Sum_probs=77.8

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI   79 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~   79 (112)
                      +|++|||+|.+.++..++++++++|+++.+|.+.++.+++...++.+++++.|++... ++++++++++.+|++++  .+
T Consensus       239 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~~--~i  316 (344)
T 2h6e_A          239 ASIAIDLVGTEETTYNLGKLLAQEGAIILVGMEGKRVSLEAFDTAVWNKKLLGSNYGSLNDLEDVVRLSESGKIKP--YI  316 (344)
T ss_dssp             EEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSCCCCCHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSSCC--CE
T ss_pred             ccEEEECCCChHHHHHHHHHhhcCCEEEEeCCCCCCcccCHHHHhhCCcEEEEEecCCHHHHHHHHHHHHcCCCCc--ce
Confidence            5899999999878999999999999999999876666778888889999999988654 78999999999998865  46


Q ss_pred             eeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         80 THNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                       ++|||+|+++||+.+.+++. .+|+|+.+
T Consensus       317 -~~~~l~~~~~A~~~~~~~~~-~gKvvl~~  344 (344)
T 2h6e_A          317 -IKVPLDDINKAFTNLDEGRV-DGRQVITP  344 (344)
T ss_dssp             -EEECC-----------------CEEEECC
T ss_pred             -EEEeHHHHHHHHHHHHcCCC-ceEEEEeC
Confidence             89999999999999988873 49999864

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=99.74  E-value=5.4e-18  Score=113.04  Aligned_cols=105  Identities=20%  Similarity=0.221  Sum_probs=92.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC-CccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP-QMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~-~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|++||++|.+.++..++++++++|+++.+|.+. ++ ++++..++.+++++.|++.+. ++++++++++.+|+++  ++
T Consensus       241 ~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~-~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~--~~  317 (347)
T 1jvb_A          241 VDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADL-HYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGKVK--PM  317 (347)
T ss_dssp             EEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCC-CCCHHHHHHHTCEEEECCSCCHHHHHHHHHHHHTTSSC--CC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCC-CCCHHHHHhCceEEEEEeccCHHHHHHHHHHHHcCCCC--ce
Confidence            5899999998878999999999999999999866 55 777778889999999988655 7899999999999875  46


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ++++|||+++++||+.+.+++. .+|+|+.+
T Consensus       318 i~~~~~l~~~~~A~~~~~~~~~-~gKvvl~~  347 (347)
T 1jvb_A          318 ITKTMKLEEANEAIDNLENFKA-IGRQVLIP  347 (347)
T ss_dssp             CEEEEEGGGHHHHHHHHHTTCC-CSEEEEEC
T ss_pred             EEEEEcHHHHHHHHHHHHCCCC-cceEEecC
Confidence            8899999999999999998873 48999864

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=99.74  E-value=2.7e-18  Score=115.78  Aligned_cols=106  Identities=19%  Similarity=0.272  Sum_probs=93.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC-C-ccccChhh-hhhcCeeEEeEeccC-CCHHHHHHHHHc--CCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP-Q-MVSVPLVN-ACAKEIDILSCFRYV-NDYPDALEMVAS--GKCP   74 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~-~-~~~~~~~~-~~~~~~~l~g~~~~~-~~~~~~~~~~~~--g~~~   74 (112)
                      +|++|||+|.+.++..++++++++|+++.+|... + +.+++... ++.+++++.|++... .+++++++++++  |++ 
T Consensus       268 ~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~~~g~l-  346 (380)
T 1vj0_A          268 ADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFVKTVSITSRNYQLL-  346 (380)
T ss_dssp             EEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCCCHHHHHHHHHHHHTCHHHH-
T ss_pred             CcEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCCeeEchHHHHHhCCeEEEEeecCCHHHHHHHHHHHHhhcCCe-
Confidence            5899999998888999999999999999999866 5 66788877 899999999988654 789999999999  977 


Q ss_pred             CccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         75 VRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        75 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                       .++++++|||+|+++||+.+.+++ .. |+|+.++
T Consensus       347 -~~~i~~~~~l~~~~~A~~~~~~~~-~~-Kvvl~~~  379 (380)
T 1vj0_A          347 -SKLITHRLPLKEANKALELMESRE-AL-KVILYPE  379 (380)
T ss_dssp             -GGGCCEEEEGGGHHHHHHHHHHTS-CS-CEEEECC
T ss_pred             -eeEEEEEEeHHHHHHHHHHHhcCC-Cc-eEEEEeC
Confidence             567889999999999999999887 45 9999875

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.4e-17  Score=110.98  Aligned_cols=107  Identities=17%  Similarity=0.197  Sum_probs=92.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|++||++|.+..+..++++++++|+++.+|...+ +.++++..++.+++++.|++... .+++++++++.+|++++.  
T Consensus       239 ~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~--  316 (347)
T 2hcy_A          239 AHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYVGNRADTREALDFFARGLVKSP--  316 (347)
T ss_dssp             EEEEEECSSCHHHHHHHTTSEEEEEEEEECCCCTTCEEEEEHHHHHHTTCEEEECCCCCHHHHHHHHHHHHTTSCCCC--
T ss_pred             CCEEEECCCcHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCCHHHHhhCCcEEEEccCCCHHHHHHHHHHHHhCCCccc--
Confidence            58999999988889999999999999999998663 56777778889999999987655 789999999999988763  


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                       +++|||+++++||+.+.+++ ..+|+|+.+++
T Consensus       317 -~~~~~l~~~~~A~~~~~~~~-~~gKvvv~~~~  347 (347)
T 2hcy_A          317 -IKVVGLSTLPEIYEKMEKGQ-IVGRYVVDTSK  347 (347)
T ss_dssp             -EEEEEGGGHHHHHHHHHTTC-CSSEEEEESCC
T ss_pred             -eEEEcHHHHHHHHHHHHcCC-cceeEEEecCC
Confidence             57899999999999999887 35999998764

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=99.73  E-value=6e-18  Score=113.25  Aligned_cols=106  Identities=16%  Similarity=0.208  Sum_probs=90.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccc-cChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVS-VPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~-~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|++|||+|.+.++..++++++++|+++.+|....+.. ++.. ++.+++++.|++.+. .+++++++++++|++++.  
T Consensus       245 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~-~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~--  321 (357)
T 2cf5_A          245 LDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPL-LMLGRKVITGSFIGSMKETEEMLEFCKEKGLSSI--  321 (357)
T ss_dssp             EEEEEECCCSCCCSHHHHTTEEEEEEEEECSCCSSCCCCCHHH-HHHHTCEEEECCSCCHHHHHHHHHHHHHTTCCCC--
T ss_pred             CCEEEECCCChHHHHHHHHHhccCCEEEEeCCCCCCccccCHH-HHhCccEEEEEccCCHHHHHHHHHHHHcCCCCCc--
Confidence            58999999987778999999999999999998665444 6666 888999999988755 789999999999988763  


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      + ++|||+++++||+.+.+++. .+|+|+.+++
T Consensus       322 ~-~~~~l~~~~~A~~~~~~~~~-~gKvvi~~~~  352 (357)
T 2cf5_A          322 I-EVVKMDYVNTAFERLEKNDV-RYRFVVDVEG  352 (357)
T ss_dssp             E-EEEEGGGHHHHHHHHHTTCS-SSEEEEETTS
T ss_pred             e-EEEeHHHHHHHHHHHHCCCC-ceEEEEeCCc
Confidence            4 68999999999999998873 5899998864

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=99.73  E-value=7.6e-18  Score=114.39  Aligned_cols=104  Identities=16%  Similarity=0.228  Sum_probs=90.6

Q ss_pred             CcEEEEcccCh-HHHHHHHhhc----cCCcEEEEEecCCCccccChhhhhhcCeeEEeEecc--CCCHHHHHHHHHcCCC
Q psy12355          1 MMLYLDPLGTE-NCLTLGINVT----KMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY--VNDYPDALEMVASGKC   73 (112)
Q Consensus         1 ~D~v~d~~g~~-~~~~~~~~~l----~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~--~~~~~~~~~~~~~g~~   73 (112)
                      +|++|||+|.+ .++..+++++    +++|+++.+|....+.+++...++.+++++.|++.+  ..+++++++++++| +
T Consensus       283 ~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~ll~~g-l  361 (404)
T 3ip1_A          283 AKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQIVGSQGHSGHGTFPRVISLMASG-M  361 (404)
T ss_dssp             CSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCCCSCEEECHHHHHHTTCEEEECCCCCSTTHHHHHHHHHHTT-C
T ss_pred             CCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCCCCCCcccHHHHhccceEEEEecCCCchHHHHHHHHHHHcC-C
Confidence            69999999987 4677788888    999999999988777788888999999999999864  37899999999999 9


Q ss_pred             CCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      ++.++++++|+|+++++||+.+..     +|+|+.++
T Consensus       362 ~~~~~i~~~~~l~~~~~A~~~~~~-----GKvvl~~~  393 (404)
T 3ip1_A          362 DMTKIISKTVSMEEIPEYIKRLQT-----DKSLVKVT  393 (404)
T ss_dssp             CGGGGCCEEECGGGHHHHHHHTTT-----CTTCSCEE
T ss_pred             ChhheEEEEeeHHHHHHHHHHHhC-----CcEEEecC
Confidence            998899999999999999999972     56676653

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.72  E-value=8.2e-18  Score=113.12  Aligned_cols=107  Identities=17%  Similarity=0.166  Sum_probs=88.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCcc-ccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMV-SVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~-~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|++|||+|.+.++..++++++++|+++.+|....+. .++...++.+++++.|++.+. ++++++++++++|++++.  
T Consensus       258 ~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~~~--  335 (369)
T 1uuf_A          258 FDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGIVAD--  335 (369)
T ss_dssp             EEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCSCCHHHHHHHHHHHHHHTCCCC--
T ss_pred             CCEEEECCCCHHHHHHHHHHhccCCEEEEeccCCCCccccCHHHHHhCCcEEEEeecCCHHHHHHHHHHHHhCCCCcc--
Confidence            5899999998777899999999999999999866544 677778889999999988655 789999999999988653  


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      + ++|||+++++||+.+.+++. .+|+|+.+++
T Consensus       336 i-~~~~l~~~~~A~~~~~~~~~-~gKvvi~~~~  366 (369)
T 1uuf_A          336 I-EMIRADQINEAYERMLRGDV-KYRFVIDNRT  366 (369)
T ss_dssp             E-EEECGGGHHHHHHHHHTTCS-SSEEEEEGGG
T ss_pred             e-EEEcHHHHHHHHHHHHcCCC-ceEEEEecCC
Confidence            4 57999999999999998873 5999998754

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=99.72  E-value=3.3e-18  Score=114.80  Aligned_cols=109  Identities=21%  Similarity=0.226  Sum_probs=92.8

Q ss_pred             CcEEEEcccChHHH-HHHHhhccCCcEEEEEecCCCc-cccChhh---hhhcCeeEEeEeccC-CCHHHHHHHHHcCCCC
Q psy12355          1 MMLYLDPLGTENCL-TLGINVTKMGGKLMLVGMGPQM-VSVPLVN---ACAKEIDILSCFRYV-NDYPDALEMVASGKCP   74 (112)
Q Consensus         1 ~D~v~d~~g~~~~~-~~~~~~l~~~G~iv~~g~~~~~-~~~~~~~---~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~   74 (112)
                      +|++|||+|.+.++ ..++++++++|+++.+|..... ..++...   ++.+++++.|++.+. ++++++++++++|+++
T Consensus       247 ~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~  326 (366)
T 2cdc_A          247 FDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLVNGQKPHFQQAVVHLASWKTL  326 (366)
T ss_dssp             EEEEEECCCCCTHHHHHHGGGEEEEEEEEECSCCCSCEEEEEHHHHHHHHHTTCEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEECCCChHHHHHHHHHHHhcCCEEEEEecCCCCccccChhhhHHHHhcCcEEEEecCCCHHHHHHHHHHHHcCCCC
Confidence            58999999987778 9999999999999999986653 6677777   889999999987654 7899999999999876


Q ss_pred             ----CccceeeeeCcccHHHHHHHH-hcCCCCceEEEEeeC
Q psy12355         75 ----VRKLITHNFKLEEAVEAFKTA-SKKADDTIKIMIHCR  110 (112)
Q Consensus        75 ----~~~~~~~~~~l~~~~~a~~~~-~~~~~~~~k~v~~~~  110 (112)
                          +.++++++|||+++++||+.+ ..++ ..+|+|+.++
T Consensus       327 ~~~~~~~~i~~~~~l~~~~~A~~~l~~~~~-~~gKvvi~~~  366 (366)
T 2cdc_A          327 YPKAAKMLITKTVSINDEKELLKVLREKEH-GEIKIRILWE  366 (366)
T ss_dssp             SHHHHTTSEEEEEETTCHHHHHHHHHCCCT-TCCEEEEECC
T ss_pred             cccchhhcEEEEEcHHHHHHHHHHHhhhcC-CceEEEEecC
Confidence                678889999999999999994 3344 3599999864

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=99.72  E-value=1.3e-18  Score=116.36  Aligned_cols=106  Identities=16%  Similarity=0.128  Sum_probs=92.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC-CccccChhhh----hhcCeeEEeEeccC-CCHHHHHHHHHcC--C
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP-QMVSVPLVNA----CAKEIDILSCFRYV-NDYPDALEMVASG--K   72 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~-~~~~~~~~~~----~~~~~~l~g~~~~~-~~~~~~~~~~~~g--~   72 (112)
                      +|++|||+|.+.++..++++++++|+++.+|... .+.+++...+    +.+++++.|++.+. ++++++++++++|  +
T Consensus       243 ~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~~~  322 (357)
T 2b5w_A          243 MDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSVNSHVEHFEAATVTFTKLPKW  322 (357)
T ss_dssp             EEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHTTCEEEECCCCCHHHHHHHHHHHHHSCHH
T ss_pred             CCEEEECCCChHHHHHHHHHHhcCCEEEEEeCCCCCCceecHHHHhHHHHhCCeEEEEeccCCHHHHHHHHHHHHhCchh
Confidence            5899999999878999999999999999999876 5566777777    89999999987654 7899999999999  8


Q ss_pred             CCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         73 CPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        73 ~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      + +.++++++|||+++++||+.+  +.  .+|+|+.+++
T Consensus       323 ~-~~~~i~~~~~l~~~~~A~~~~--~~--~gKvvi~~~~  356 (357)
T 2b5w_A          323 F-LEDLVTGVHPLSEFEAAFDDD--DT--TIKTAIEFST  356 (357)
T ss_dssp             H-HHHHEEEEEEGGGGGGGGCCS--TT--CCEEEEECCC
T ss_pred             h-hhhhcceeecHHHHHHHHHHh--CC--CceEEEEecC
Confidence            6 677888999999999999988  33  3999998864

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=99.72  E-value=1.1e-17  Score=112.29  Aligned_cols=104  Identities=17%  Similarity=0.128  Sum_probs=91.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|++|||+| ...+.+++++++++|+++.+|...+ ..+++...++.+++++.|+..+. .+++++++++.+|++  +++
T Consensus       258 ~D~vid~~g-~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l--~~~  334 (363)
T 3uog_A          258 ADHILEIAG-GAGLGQSLKAVAPDGRISVIGVLEGFEVSGPVGPLLLKSPVVQGISVGHRRALEDLVGAVDRLGL--KPV  334 (363)
T ss_dssp             EEEEEEETT-SSCHHHHHHHEEEEEEEEEECCCSSCEECCBTTHHHHTCCEEEECCCCCHHHHHHHHHHHHHHTC--CCC
T ss_pred             ceEEEECCC-hHHHHHHHHHhhcCCEEEEEecCCCcccCcCHHHHHhCCcEEEEEecCCHHHHHHHHHHHHcCCC--ccc
Confidence            589999998 4668999999999999999998765 46778888999999999998765 789999999999976  457


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ++++|||+++++||+.+.+++ . +|+|+++
T Consensus       335 i~~~~~l~~~~~A~~~~~~~~-~-gKvvi~~  363 (363)
T 3uog_A          335 IDMRYKFTEVPEALAHLDRGP-F-GKVVIEF  363 (363)
T ss_dssp             EEEEEEGGGHHHHHHTGGGCC-S-BEEEEEC
T ss_pred             eeeEEcHHHHHHHHHHHHcCC-C-ccEEEeC
Confidence            889999999999999999887 3 9999875

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=99.71  E-value=3.5e-17  Score=112.64  Aligned_cols=105  Identities=14%  Similarity=0.176  Sum_probs=91.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|++|||+|. .++.+++++++++|+++.+|...+ ..+++...++.+++++.|++... .++.++++++++|+++  ++
T Consensus       315 ~Dvvid~~G~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~--~~  391 (456)
T 3krt_A          315 IDIVFEHPGR-ETFGASVFVTRKGGTITTCASTSGYMHEYDNRYLWMSLKRIIGSHFANYREAWEANRLIAKGRIH--PT  391 (456)
T ss_dssp             EEEEEECSCH-HHHHHHHHHEEEEEEEEESCCTTCSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSSC--CC
T ss_pred             CcEEEEcCCc-hhHHHHHHHhhCCcEEEEEecCCCcccccCHHHHHhcCeEEEEeccCCHHHHHHHHHHHHcCCcc--cc
Confidence            5899999987 779999999999999999997664 56677788889999999998765 6788899999999886  46


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ++++|||+++++|++.+.+++ ..+|+|+.+
T Consensus       392 i~~~~~l~~~~eA~~~l~~~~-~~GKvvv~~  421 (456)
T 3krt_A          392 LSKVYSLEDTGQAAYDVHRNL-HQGKVGVLC  421 (456)
T ss_dssp             EEEEEEGGGHHHHHHHHHTTC-SSSEEEEES
T ss_pred             eeEEEcHHHHHHHHHHHHhCC-CCCcEEEEe
Confidence            889999999999999999988 459998876

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=99.71  E-value=1.3e-17  Score=112.00  Aligned_cols=106  Identities=15%  Similarity=0.133  Sum_probs=92.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI   79 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~   79 (112)
                      +|++|||+|.+.++..++++++++|+++.+|....+.+++...++.+++++.|++.+. .+++++++++.+|++++.  +
T Consensus       252 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~--~  329 (366)
T 1yqd_A          252 LDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKIVAGSGIGGMKETQEMIDFAAKHNITAD--I  329 (366)
T ss_dssp             EEEEEECCSSCCCSHHHHHHEEEEEEEEECCCCSSCEEECHHHHHTTTCEEEECCSCCHHHHHHHHHHHHHTTCCCC--E
T ss_pred             CCEEEECCCcHHHHHHHHHHHhcCCEEEEEccCCCCCCcCHHHHHhCCcEEEEecCCCHHHHHHHHHHHHcCCCCCc--e
Confidence            5899999998767899999999999999999876666678888899999999988655 789999999999998764  4


Q ss_pred             eeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         80 THNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                       ++|||+|+++||+.+.+++. .+|+|+.++
T Consensus       330 -~~~~l~~~~~A~~~~~~~~~-~gKvvl~~~  358 (366)
T 1yqd_A          330 -EVISTDYLNTAMERLAKNDV-RYRFVIDVG  358 (366)
T ss_dssp             -EEECGGGHHHHHHHHHTTCC-SSEEEECHH
T ss_pred             -EEEcHHHHHHHHHHHHcCCc-ceEEEEEcc
Confidence             68999999999999998873 599999763

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=99.71  E-value=5.4e-17  Score=108.06  Aligned_cols=105  Identities=18%  Similarity=0.253  Sum_probs=90.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCc-cccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQM-VSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~-~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|++||++| ..++..++++++++|+++.+|..... ..+++..++.+++++.|+.... ++++++++++.+|+++  ++
T Consensus       236 ~d~vi~~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~g~l~--~~  312 (343)
T 2eih_A          236 ADKVVDHTG-ALYFEGVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMASKSRLFPILRFVEEGKLK--PV  312 (343)
T ss_dssp             EEEEEESSC-SSSHHHHHHHEEEEEEEEESSCCCSCCCCCCTTHHHHTTCEEEECCSCCGGGHHHHHHHHHHTSSC--CC
T ss_pred             ceEEEECCC-HHHHHHHHHhhccCCEEEEEecCCCCcCccCHHHHHhCCcEEEEecCccHHHHHHHHHHHHcCCCC--Cc
Confidence            589999998 67789999999999999999976543 3577778889999999987544 7899999999999875  46


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ++++|||+++++||+.+.+++. .+|+|+.+
T Consensus       313 i~~~~~l~~~~~A~~~~~~~~~-~gKvvv~~  342 (343)
T 2eih_A          313 VGQVLPLEAAAEGHRLLEERRV-FGKVVLQV  342 (343)
T ss_dssp             EEEEEEGGGHHHHHHHHHTTCS-SSEEEEEC
T ss_pred             eeEEeeHHHHHHHHHHHHcCCC-ceEEEEec
Confidence            8899999999999999998873 48999875

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=99.70  E-value=2.8e-17  Score=111.29  Aligned_cols=109  Identities=16%  Similarity=0.160  Sum_probs=89.4

Q ss_pred             CcEEEEcccCh---------------HHHHHHHhhccCCcEEEEEecCC-C------------ccccChhhhhhcCeeEE
Q psy12355          1 MMLYLDPLGTE---------------NCLTLGINVTKMGGKLMLVGMGP-Q------------MVSVPLVNACAKEIDIL   52 (112)
Q Consensus         1 ~D~v~d~~g~~---------------~~~~~~~~~l~~~G~iv~~g~~~-~------------~~~~~~~~~~~~~~~l~   52 (112)
                      +|++|||+|.+               .++..++++++++|+++.+|.+. .            ...++...++.+++++.
T Consensus       255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (398)
T 1kol_A          255 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFH  334 (398)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCCCCCHHHHHHTTCEEE
T ss_pred             CCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEeccccCCcccccccccccccccccHHHHhhcccEEE
Confidence            58999999975               37899999999999999999752 1            23455666788999998


Q ss_pred             eEeccC-CCHHHHHHHHHcCCCC-CccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         53 SCFRYV-NDYPDALEMVASGKCP-VRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        53 g~~~~~-~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      ++.... ..++++++++.+|+++ +.++++++|+|+|+++||+.+.+++ . +|+|+.++.
T Consensus       335 g~~~~~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~~~~A~~~~~~~~-~-gKvvi~~~~  393 (398)
T 1kol_A          335 TGQTPVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGV-P-KKFVIDPHK  393 (398)
T ss_dssp             ESSCCHHHHHHHHHHHHHTTSCCHHHHHTEEEECGGGHHHHHHHHHHTC-S-CEEEECTTC
T ss_pred             ecccChHHHHHHHHHHHHcCCCCCccceeEEEEcHHHHHHHHHHHhCCC-c-eEEEEEeCC
Confidence            865433 5688999999999998 4457889999999999999999887 4 999998754

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=99.70  E-value=1.2e-16  Score=109.71  Aligned_cols=106  Identities=16%  Similarity=0.218  Sum_probs=91.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|++|||+|. ..+..++++++++|+++.+|...+ ...++...++.+++++.|++.+. .++.++++++++|+++  ++
T Consensus       307 ~Dvvid~~G~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~--~~  383 (447)
T 4a0s_A          307 PDIVFEHTGR-VTFGLSVIVARRGGTVVTCGSSSGYLHTFDNRYLWMKLKKIVGSHGANHEEQQATNRLFESGAVV--PA  383 (447)
T ss_dssp             CSEEEECSCH-HHHHHHHHHSCTTCEEEESCCTTCSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSSC--CC
T ss_pred             ceEEEECCCc-hHHHHHHHHHhcCCEEEEEecCCCcccccCHHHHHhCCCEEEecCCCCHHHHHHHHHHHHcCCcc--cc
Confidence            6999999987 568999999999999999997654 56677788899999999998766 7788999999999885  47


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      ++++|||+|+++||+.+.+++ ..+|+|+.+.
T Consensus       384 i~~~~~l~~~~~A~~~~~~~~-~~GKvvv~~~  414 (447)
T 4a0s_A          384 MSAVYPLAEAAEACRVVQTSR-QVGKVAVLCM  414 (447)
T ss_dssp             EEEEEEGGGHHHHHHHHHTTC-CSSEEEEESS
T ss_pred             eeEEEcHHHHHHHHHHHhcCC-CceEEEEEeC
Confidence            889999999999999999888 4599988763

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=99.70  E-value=9.9e-17  Score=106.41  Aligned_cols=107  Identities=15%  Similarity=0.232  Sum_probs=89.8

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCc-cccChhhhhhcCeeEEeEecc----C-C----CHHHHHHHHHc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQM-VSVPLVNACAKEIDILSCFRY----V-N----DYPDALEMVAS   70 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~-~~~~~~~~~~~~~~l~g~~~~----~-~----~~~~~~~~~~~   70 (112)
                      +|++|||+|. ..+..++++++++|+++.+|...+. .+++...++.+++++.+++..    . .    .++++++++.+
T Consensus       218 ~D~vid~~g~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  296 (334)
T 3qwb_A          218 VDASFDSVGK-DTFEISLAALKRKGVFVSFGNASGLIPPFSITRLSPKNITLVRPQLYGYIADPEEWKYYSDEFFGLVNS  296 (334)
T ss_dssp             EEEEEECCGG-GGHHHHHHHEEEEEEEEECCCTTCCCCCBCGGGGTTTTCEEECCCGGGGSCSHHHHHHHHHHHHHHHHT
T ss_pred             ceEEEECCCh-HHHHHHHHHhccCCEEEEEcCCCCCCCCcchhhhhhCceEEEEEEeccccCCHHHHHHHHHHHHHHHHC
Confidence            5899999987 6689999999999999999986653 467888899999999986532    1 2    34689999999


Q ss_pred             CCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         71 GKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        71 g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      |++++.  ++++|||+++++||+.+.+++ ..+|+|+.+++
T Consensus       297 g~l~~~--i~~~~~l~~~~~A~~~~~~~~-~~gKvvi~~~q  334 (334)
T 3qwb_A          297 KKLNIK--IYKTYPLRDYRTAAADIESRK-TVGKLVLEIPQ  334 (334)
T ss_dssp             TSSCCC--EEEEEEGGGHHHHHHHHHTTC-CCBEEEEECCC
T ss_pred             CCccCc--eeeEEcHHHHHHHHHHHHhCC-CceEEEEecCC
Confidence            998764  889999999999999999988 45999998864

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=99.69  E-value=6.7e-17  Score=107.85  Aligned_cols=107  Identities=17%  Similarity=0.184  Sum_probs=80.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC---c--------------cccChhhhhhcCeeEEeEecc------
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ---M--------------VSVPLVNACAKEIDILSCFRY------   57 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~---~--------------~~~~~~~~~~~~~~l~g~~~~------   57 (112)
                      +|++|||+|++. +.+++++++++|+++.+|....   .              ..++...++.+++++.|+...      
T Consensus       209 ~Dvv~d~~g~~~-~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~  287 (349)
T 4a27_A          209 VDIVLDCLCGDN-TGKGLSLLKPLGTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQ  287 (349)
T ss_dssp             EEEEEEECC--------CTTEEEEEEEEEEC-------------------------CHHHHHHHTCEEEEECHHHHHHTS
T ss_pred             ceEEEECCCchh-HHHHHHHhhcCCEEEEECCCcccccccccccccccccccccccCHHHHhhcCceEEEEeehheeccc
Confidence            589999998866 5899999999999999997531   1              235666788899999998742      


Q ss_pred             ------CCCHHHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         58 ------VNDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        58 ------~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                            .++++++++++++|+++  ++++++|+|+++++||+.+.+++ ..+|+|+.+++
T Consensus       288 ~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~l~~~~-~~GKvvi~~~~  344 (349)
T 4a27_A          288 GRAGLIRGVVEKLIGLYNQKKIK--PVVDSLWALEEVKEAMQRIHDRG-NIGKLILDVEK  344 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTSCC--CCEEEEECGGGHHHHHHHHHTTC-CSSEEEEETTC
T ss_pred             cchHHHHHHHHHHHHHHHCCCcc--ccccceECHHHHHHHHHHHHhCC-CCceEEEecCC
Confidence                  25688999999999885  57889999999999999999888 45999999865

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=99.68  E-value=3.1e-17  Score=109.87  Aligned_cols=105  Identities=14%  Similarity=0.164  Sum_probs=90.7

Q ss_pred             CcEEEEcccC--hHHHHHHHhhccCCcEEEEEecCCCcc-ccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCc
Q psy12355          1 MMLYLDPLGT--ENCLTLGINVTKMGGKLMLVGMGPQMV-SVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVR   76 (112)
Q Consensus         1 ~D~v~d~~g~--~~~~~~~~~~l~~~G~iv~~g~~~~~~-~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~   76 (112)
                      +|++|||+|.  +.++..++++++++|+++.+|.+.. . .++...++.+++++.|++.+. .+++++++++.+|++++ 
T Consensus       244 ~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~-  321 (360)
T 1piw_A          244 FDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQ-HEMLSLKPYGLKAVSISYSALGSIKELNQLLKLVSEKDIKI-  321 (360)
T ss_dssp             EEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCS-SCCEEECGGGCBSCEEEECCCCCHHHHHHHHHHHHHTTCCC-
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhcCCCEEEEecCCCC-ccccCHHHHHhCCeEEEEEecCCHHHHHHHHHHHHhCCCcc-
Confidence            5899999998  6778999999999999999998665 4 566677889999999988655 78999999999998865 


Q ss_pred             cceeeeeCccc--HHHHHHHHhcCCCCceEEEEeeC
Q psy12355         77 KLITHNFKLEE--AVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        77 ~~~~~~~~l~~--~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                       .+ ++|||++  +++||+.+.+++. .+|+|+.++
T Consensus       322 -~i-~~~~l~~~~~~~A~~~~~~~~~-~gKvvi~~~  354 (360)
T 1piw_A          322 -WV-ETLPVGEAGVHEAFERMEKGDV-RYRFTLVGY  354 (360)
T ss_dssp             -CE-EEEESSHHHHHHHHHHHHHTCC-SSEEEEECC
T ss_pred             -eE-EEEeccHhHHHHHHHHHHCCCC-ceEEEEecC
Confidence             36 8999999  9999999998873 489999875

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=99.68  E-value=1.2e-16  Score=106.86  Aligned_cols=105  Identities=15%  Similarity=0.251  Sum_probs=88.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccc-cChhhhhhcCeeEEeEeccC-CC----------HHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVS-VPLVNACAKEIDILSCFRYV-ND----------YPDALEM   67 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~-~~~~~~~~~~~~l~g~~~~~-~~----------~~~~~~~   67 (112)
                      +|++|||+|.+ .+..++++++++|+++.+|.... ... +++..++.+++++.|++... ..          +++++++
T Consensus       236 ~Dvvid~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l  314 (353)
T 4dup_A          236 VDIILDMIGAA-YFERNIASLAKDGCLSIIAFLGGAVAEKVNLSPIMVKRLTVTGSTMRPRTAEEKRAIRDDLLSEVWPL  314 (353)
T ss_dssp             EEEEEESCCGG-GHHHHHHTEEEEEEEEECCCTTCSEEEEEECHHHHHTTCEEEECCSTTSCHHHHHHHHHHHHHHTHHH
T ss_pred             ceEEEECCCHH-HHHHHHHHhccCCEEEEEEecCCCcccCCCHHHHHhcCceEEEEeccccchhhhHHHHHHHHHHHHHH
Confidence            58999999875 68999999999999999997654 344 77888999999999988644 22          7889999


Q ss_pred             HHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         68 VASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        68 ~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +++|+++  ++++++|+|+++++||+.+.+++ ..+|+|+++
T Consensus       315 ~~~g~l~--~~i~~~~~l~~~~~A~~~l~~~~-~~gKvvl~~  353 (353)
T 4dup_A          315 LEAGTVA--PVIHKVFAFEDVADAHRLLEEGS-HVGKVMLTV  353 (353)
T ss_dssp             HHHTSSC--CCEEEEEEGGGHHHHHHHHHHTC-CSSEEEEEC
T ss_pred             HHCCCcc--CCcceEEeHHHHHHHHHHHHhCC-CCceEEEeC
Confidence            9999875  57889999999999999999988 458999874

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=99.68  E-value=1.1e-16  Score=107.29  Aligned_cols=102  Identities=17%  Similarity=0.230  Sum_probs=88.3

Q ss_pred             CcEEEEcccChH--HHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCcc
Q psy12355          1 MMLYLDPLGTEN--CLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRK   77 (112)
Q Consensus         1 ~D~v~d~~g~~~--~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~   77 (112)
                      +|++|||+|.+.  ++..++++  ++|+++.+|.+.++ ++++..++.+++++.|++... .+++++++++.+|++++  
T Consensus       255 ~Dvvid~~G~~~~~~~~~~~~~--~~G~~v~~g~~~~~-~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~--  329 (359)
T 1h2b_A          255 VNVAMDFVGSQATVDYTPYLLG--RMGRLIIVGYGGEL-RFPTIRVISSEVSFEGSLVGNYVELHELVTLALQGKVRV--  329 (359)
T ss_dssp             EEEEEESSCCHHHHHHGGGGEE--EEEEEEECCCSSCC-CCCHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSCCC--
T ss_pred             CcEEEECCCCchHHHHHHHhhc--CCCEEEEEeCCCCC-CCCHHHHHhCCcEEEEecCCCHHHHHHHHHHHHcCCCcc--
Confidence            589999999986  88999988  99999999986655 677778889999999988654 78999999999998865  


Q ss_pred             ceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         78 LITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        78 ~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      .+ ++|||+|+++||+.+.+++. .+|+|+.+
T Consensus       330 ~i-~~~~l~~~~~A~~~~~~~~~-~gKvvv~~  359 (359)
T 1h2b_A          330 EV-DIHKLDEINDVLERLEKGEV-LGRAVLIP  359 (359)
T ss_dssp             CE-EEEEGGGHHHHHHHHHTTCC-SSEEEEEC
T ss_pred             eE-EEEeHHHHHHHHHHHHcCCC-ceEEEeeC
Confidence            46 89999999999999998873 59999864

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=99.68  E-value=1.1e-16  Score=107.29  Aligned_cols=107  Identities=14%  Similarity=0.082  Sum_probs=87.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC----------CCHHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV----------NDYPDALEMVA   69 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~----------~~~~~~~~~~~   69 (112)
                      +|++|||+|++... .++++++++|+++.+|.... +.+++...++.+++++.|++.+.          ..++++++++.
T Consensus       246 ~Dvvid~~G~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~  324 (364)
T 1gu7_A          246 AKLALNCVGGKSST-GIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYE  324 (364)
T ss_dssp             EEEEEESSCHHHHH-HHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEEECCHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ceEEEECCCchhHH-HHHHHhccCCEEEEecCCCCCCcccCHHHHhhcCcEEEEEchhHhcccCHHHHHHHHHHHHHHHH
Confidence            58999999887654 88999999999999997654 56677778888999999987432          46889999999


Q ss_pred             cCCCCCccceeeee-CcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         70 SGKCPVRKLITHNF-KLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        70 ~g~~~~~~~~~~~~-~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +|++++.+..+..+ +++++.+||+.+.+++ ..+|+|+.+
T Consensus       325 ~g~l~~~~~~~~~~~~l~~~~~A~~~~~~~~-~~gKvvv~~  364 (364)
T 1gu7_A          325 EGKLTDAKSIETLYDGTKPLHELYQDGVANS-KDGKQLITY  364 (364)
T ss_dssp             HTCCCCCCCEEEECCSSSCHHHHHHHHHHTG-GGSCEEEEC
T ss_pred             cCCcccccceEEecCchhhHHHHHHHHHhCC-CCceEEEeC
Confidence            99998876655445 4569999999998886 459999874

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=99.67  E-value=3.1e-16  Score=104.91  Aligned_cols=105  Identities=14%  Similarity=0.118  Sum_probs=86.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC-CccccChhhhhhcCeeEEeEecc-----------CCCHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP-QMVSVPLVNACAKEIDILSCFRY-----------VNDYPDALEMV   68 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~-~~~~~~~~~~~~~~~~l~g~~~~-----------~~~~~~~~~~~   68 (112)
                      +|++|||+|++. ...++++++++|+++.+|... .+..++...++.+++++.|++.+           .+.++++++++
T Consensus       241 ~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~  319 (357)
T 1zsy_A          241 PRLALNCVGGKS-STELLRQLARGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLI  319 (357)
T ss_dssp             CSEEEESSCHHH-HHHHHTTSCTTCEEEECCCCTTCCBCCCHHHHHHSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             ceEEEECCCcHH-HHHHHHhhCCCCEEEEEecCCCCCCCCCHHHHHhcCceEEEEEcchhcccCCHHHHHHHHHHHHHHH
Confidence            599999998765 467999999999999998644 35667777788899999998642           13478899999


Q ss_pred             HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      .+|++++.  +.++|||+++++||+.+.+++. .+|+|+.+
T Consensus       320 ~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~-~gKvvl~~  357 (357)
T 1zsy_A          320 RRGQLTAP--ACSQVPLQDYQSALEASMKPFI-SSKQILTM  357 (357)
T ss_dssp             HTTSSCCC--CEEEEEGGGHHHHHHHHTSSSC-SSEEEEEC
T ss_pred             HcCCCcCc--cceEEcHHHHHHHHHHHHhCCC-CCcEEEeC
Confidence            99998764  5578999999999999988873 48999874

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.67  E-value=2.4e-16  Score=104.83  Aligned_cols=107  Identities=20%  Similarity=0.136  Sum_probs=88.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC------ccccChhhhhhcCeeEEeEeccC--C----CHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ------MVSVPLVNACAKEIDILSCFRYV--N----DYPDALEMV   68 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~------~~~~~~~~~~~~~~~l~g~~~~~--~----~~~~~~~~~   68 (112)
                      +|++|||+|. ..+..++++++++|+++.+|....      ...++...++.+++++.|++.+.  .    .++++++++
T Consensus       226 ~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~  304 (345)
T 2j3h_A          226 IDIYFENVGG-KMLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHI  304 (345)
T ss_dssp             EEEEEESSCH-HHHHHHHTTEEEEEEEEECCCGGGTTCSSCCCBSCTTHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHH
T ss_pred             CcEEEECCCH-HHHHHHHHHHhcCCEEEEEccccccccCCccccccHHHHhhhceeeceeeehhhhhhHHHHHHHHHHHH
Confidence            5899999987 678999999999999999996542      34566677889999999987543  2    388999999


Q ss_pred             HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      ++|++++  ++..+|+|+++++||+.+.+++ ..+|+|+.+++
T Consensus       305 ~~g~i~~--~~~~~~~l~~~~~A~~~~~~~~-~~gKvvv~~~~  344 (345)
T 2j3h_A          305 REGKITY--VEDVADGLEKAPEALVGLFHGK-NVGKQVVVVAR  344 (345)
T ss_dssp             HTTSSCC--CEEEEESGGGSHHHHHHHHTTC-CSSEEEEESSC
T ss_pred             HCCCCcC--cccccCCHHHHHHHHHHHHcCC-CceEEEEEeCC
Confidence            9998864  5666899999999999999887 45999999865

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=99.67  E-value=2e-16  Score=105.75  Aligned_cols=108  Identities=17%  Similarity=0.215  Sum_probs=86.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccCh-hhhhhcCeeEEeEeccC-C-C---------HHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPL-VNACAKEIDILSCFRYV-N-D---------YPDALEM   67 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~-~~~~~~~~~l~g~~~~~-~-~---------~~~~~~~   67 (112)
                      +|++|||+|.+ .+..++++++++|+++.+|...+ ...++. ..++.+++++.|++... . .         +++++++
T Consensus       232 ~d~vi~~~G~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l  310 (354)
T 2j8z_A          232 VNLILDCIGGS-YWEKNVNCLALDGRWVLYGLMGGGDINGPLFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPH  310 (354)
T ss_dssp             EEEEEESSCGG-GHHHHHHHEEEEEEEEECCCTTCSCCCSCHHHHHHHTTCEEEECCSTTCCHHHHHHHHHHHHHHTGGG
T ss_pred             ceEEEECCCch-HHHHHHHhccCCCEEEEEeccCCCccCCChhHHHHhCCCEEEEEEcccccccccHHHHHHHHHHHHHH
Confidence            48999999875 68999999999999999997654 456777 77889999999987533 1 1         2357888


Q ss_pred             HHcC-CCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         68 VASG-KCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        68 ~~~g-~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      +.+| ++++.++++++|||+++++||+.+.+++ ..+|+|+.++
T Consensus       311 ~~~g~~~~l~~~i~~~~~l~~~~~A~~~~~~~~-~~gKvvv~~~  353 (354)
T 2j8z_A          311 FSTEGPQRLLPVLDRIYPVTEIQEAHKYMEANK-NIGKIVLELP  353 (354)
T ss_dssp             GTC---CCCCCCEEEEEEGGGHHHHHHHHHTTC-CSSEEEEECC
T ss_pred             HHcCCCccccCccceEEcHHHHHHHHHHHHhCC-CCceEEEecC
Confidence            8999 4444667899999999999999998877 3599999875

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=99.67  E-value=1.7e-16  Score=104.78  Aligned_cols=104  Identities=18%  Similarity=0.133  Sum_probs=85.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC--CCHHHHHHHHHcCCCCCccc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV--NDYPDALEMVASGKCPVRKL   78 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~--~~~~~~~~~~~~g~~~~~~~   78 (112)
                      +|++|||+|.+. +.+++++++++|+++.+|......  ....+..+++++.+++...  ++++++++++.+|++++  .
T Consensus       216 ~D~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~  290 (321)
T 3tqh_A          216 VDAVIDLVGGDV-GIQSIDCLKETGCIVSVPTITAGR--VIEVAKQKHRRAFGLLKQFNIEELHYLGKLVSEDKLRI--E  290 (321)
T ss_dssp             EEEEEESSCHHH-HHHHGGGEEEEEEEEECCSTTHHH--HHHHHHHTTCEEECCCCCCCHHHHHHHHHHHHTTSSCC--C
T ss_pred             CCEEEECCCcHH-HHHHHHhccCCCEEEEeCCCCchh--hhhhhhhcceEEEEEecCCCHHHHHHHHHHHHCCCccc--c
Confidence            589999998766 499999999999999998654322  1234677899998865432  78999999999998865  5


Q ss_pred             eeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      ++++|||+|+++||+.+.+++ ..+|+|+.++
T Consensus       291 i~~~~~l~~~~~A~~~~~~~~-~~gKvvl~~~  321 (321)
T 3tqh_A          291 ISRIFQLSEAVTAHELLETGH-VRGKLVFKVR  321 (321)
T ss_dssp             EEEEECGGGHHHHHHHHHTTC-CCSEEEEECC
T ss_pred             cccEEcHHHHHHHHHHHHcCC-CCceEEEEeC
Confidence            889999999999999999988 4589999864

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=99.66  E-value=2.3e-16  Score=104.60  Aligned_cols=107  Identities=15%  Similarity=0.191  Sum_probs=89.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChh-hhhhcC--eeEEeEec-c--C-----CCHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLV-NACAKE--IDILSCFR-Y--V-----NDYPDALEMV   68 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~-~~~~~~--~~l~g~~~-~--~-----~~~~~~~~~~   68 (112)
                      +|++|||+|. .++..++++++++|+++.+|...+ ...++.. .++.++  +++.|++. +  .     +.++++++++
T Consensus       215 ~d~vi~~~g~-~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~l~  293 (333)
T 1wly_A          215 VDVVYDSIGK-DTLQKSLDCLRPRGMCAAYGHASGVADPIRVVEDLGVRGSLFITRPALWHYMSNRSEIDEGSKCLFDAV  293 (333)
T ss_dssp             EEEEEECSCT-TTHHHHHHTEEEEEEEEECCCTTCCCCCCCHHHHTTTTTSCEEECCCGGGGSCSHHHHHHHHHHHHHHH
T ss_pred             CeEEEECCcH-HHHHHHHHhhccCCEEEEEecCCCCcCCCChhHhhhhcCCcEEEEEeehhhccCHHHHHHHHHHHHHHH
Confidence            4899999988 668999999999999999997654 4567777 788899  99998754 1  1     2588999999


Q ss_pred             HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      .+|++++  +++++|||+++++||+.+.+++. .+|+|+.+++
T Consensus       294 ~~g~l~~--~i~~~~~l~~~~~A~~~~~~~~~-~gKvvi~~~~  333 (333)
T 1wly_A          294 KAGVLHS--SVAKTFPLREAAAAHKYMGGRQT-IGSIVLLPQA  333 (333)
T ss_dssp             HTTSCCC--CEEEEEEGGGHHHHHHHHHHCSC-CSEEEEETTC
T ss_pred             HCCCcCC--CcceEEeHHHHHHHHHHHHcCCC-ceEEEEEeCC
Confidence            9998854  68899999999999999998873 5999998753

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=99.66  E-value=3.7e-16  Score=104.17  Aligned_cols=106  Identities=13%  Similarity=0.059  Sum_probs=86.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-------------CCHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-------------NDYPDALEM   67 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-------------~~~~~~~~~   67 (112)
                      +|++|||+|.+.++..++++++++|+++.+|..  ..++++..+..+++++.+++.+.             +.+++++++
T Consensus       218 ~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  295 (346)
T 3fbg_A          218 VDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAF--ENDQDLNALKPKSLSFSHEFMFARPLNQTDDMIKHHEYLEDITNK  295 (346)
T ss_dssp             EEEEEESSCHHHHHHHHHHHEEEEEEEEESSCC--SSCBCGGGGTTTTCEEEECCTTHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             ccEEEECCCchHHHHHHHHHhccCCEEEEECCC--CCCCccccccccceEEEEEEEecccccchhhHHHHHHHHHHHHHH
Confidence            589999999888889999999999999988743  34466677888999999876431             347889999


Q ss_pred             HHcCCCCCccceeeee---CcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         68 VASGKCPVRKLITHNF---KLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        68 ~~~g~~~~~~~~~~~~---~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      +.+|++++  .++++|   +++++++||+.+.+++ ..+|+|+.+++
T Consensus       296 ~~~g~l~~--~i~~~~~~~~l~~~~~A~~~~~~g~-~~GKvvl~~~~  339 (346)
T 3fbg_A          296 VEQNIYQP--TTTKVIEGLTTENIYQAHQILESNT-MIGKLVINLNE  339 (346)
T ss_dssp             HHTTSSCC--CEEEEEESCCHHHHHHHHHHHHTTC-CCSEEEEEC--
T ss_pred             HHCCCEEC--CccceecCCCHHHHHHHHHHHhcCC-cceEEEEecCC
Confidence            99998764  577777   9999999999999998 45999998864

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=99.66  E-value=2.3e-16  Score=105.10  Aligned_cols=104  Identities=14%  Similarity=0.243  Sum_probs=80.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC----------CCHHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV----------NDYPDALEMVA   69 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~----------~~~~~~~~~~~   69 (112)
                      +|++|||+|.+ .+..++++++++|+++.+|...+ ...++...++.+++++.|+....          +.+++++++++
T Consensus       228 ~Dvvid~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~  306 (342)
T 4eye_A          228 VDMVVDPIGGP-AFDDAVRTLASEGRLLVVGFAAGGIPTIKVNRLLLRNASLIGVAWGEFLRTHADYLYETQAGLEKLVA  306 (342)
T ss_dssp             EEEEEESCC---CHHHHHHTEEEEEEEEEC----------CCCCGGGTTCEEEECCHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             ceEEEECCchh-HHHHHHHhhcCCCEEEEEEccCCCCCccCHHHHhhcCCEEEEEehhhhhhcCHHHHHHHHHHHHHHHH
Confidence            58999999875 58999999999999999997664 34667777899999999987421          35888999999


Q ss_pred             cCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         70 SGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        70 ~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +| +  .++++++|+|+++++||+.+.+++ ..+|+|+.+
T Consensus       307 ~g-l--~~~i~~~~~l~~~~~A~~~~~~~~-~~gKvvl~P  342 (342)
T 4eye_A          307 EG-M--RPPVSARIPLSEGRQALQDFADGK-VYGKMVLVP  342 (342)
T ss_dssp             TT-C--CCCEEEEEEGGGHHHHHHHHHTTC-CCSEEEEEC
T ss_pred             cC-C--CCCcceEEeHHHHHHHHHHHHhCC-CCceEEEeC
Confidence            99 5  557889999999999999999988 458999874

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=99.65  E-value=4e-17  Score=107.81  Aligned_cols=105  Identities=8%  Similarity=0.126  Sum_probs=88.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-------CCHHHHHHHHHcCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-------NDYPDALEMVASGK   72 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-------~~~~~~~~~~~~g~   72 (112)
                      +|++|||+|.+ .+..++++++++|+++.+|.... ..+++...++.+++++.|++...       +.++++++++.+|+
T Consensus       212 ~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~g~  290 (324)
T 3nx4_A          212 WAGAIDTVGDK-VLAKVLAQMNYGGCVAACGLAGGFALPTTVMPFILRNVRLQGVDSVMTPPARRAEAWARLVKDLPESF  290 (324)
T ss_dssp             EEEEEESSCHH-HHHHHHHTEEEEEEEEECCCTTCSEEEEESHHHHHHCCEEEECCSTTCCHHHHHHHHHHHHHHSCHHH
T ss_pred             ccEEEECCCcH-HHHHHHHHHhcCCEEEEEecCCCCCCCCCHHHHhhcCeEEEEEeccccChHHHHHHHHHHHHHHHcCC
Confidence            48999999875 79999999999999999997665 46777788899999999986422       45788899999997


Q ss_pred             CCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         73 CPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        73 ~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      +++  + +++|+|+++++||+.+.+++. .+|+|+.++
T Consensus       291 l~~--~-~~~~~l~~~~~A~~~~~~~~~-~gkvvv~~~  324 (324)
T 3nx4_A          291 YAQ--A-ATEITLADAPKFADAIINNQV-QGRTLVKIK  324 (324)
T ss_dssp             HHH--H-EEEEEGGGHHHHHHHHHTTCC-CSEEEEECC
T ss_pred             CCC--C-ceeEeHHHHHHHHHHHHhCCC-CceEEEecC
Confidence            754  4 889999999999999999884 599999874

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=99.65  E-value=4.7e-16  Score=103.20  Aligned_cols=105  Identities=13%  Similarity=0.122  Sum_probs=87.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-------ccccChhhhhhcCeeEEeEeccC------CCHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-------MVSVPLVNACAKEIDILSCFRYV------NDYPDALEM   67 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-------~~~~~~~~~~~~~~~l~g~~~~~------~~~~~~~~~   67 (112)
                      +|++|||+|. ..+..++++++++|+++.+|....       ..+++...++.+++++.|++.+.      +.+++++++
T Consensus       219 ~d~vi~~~g~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l  297 (336)
T 4b7c_A          219 IDVFFDNVGG-EILDTVLTRIAFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEMATW  297 (336)
T ss_dssp             EEEEEESSCH-HHHHHHHTTEEEEEEEEECCCGGGGC------CCTTTTHHHHTTCEEEECCGGGGGGGHHHHHHHHHHH
T ss_pred             ceEEEECCCc-chHHHHHHHHhhCCEEEEEeecccccCCcccccchhHHHHHhCCcEEEEEEhhhhhhhhHHHHHHHHHH
Confidence            5899999986 678999999999999999996541       13566777899999999988643      568899999


Q ss_pred             HHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         68 VASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        68 ~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +.+|++++...  .+++|+++++||+.+.+++ ..+|+|+++
T Consensus       298 ~~~g~l~~~~~--~~~~l~~~~~A~~~~~~~~-~~gKvvi~~  336 (336)
T 4b7c_A          298 LAEGKLQSRED--IVEGLETFPETLLKLFSGE-NFGKLVLKV  336 (336)
T ss_dssp             HHTTSSCCCEE--EEECGGGHHHHHHHHHTTC-CCSEEEEEC
T ss_pred             HHCCCccccee--eecCHHHHHHHHHHHHcCC-CCceEEEeC
Confidence            99999987644  4579999999999999988 459999874

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=99.64  E-value=1.4e-16  Score=106.24  Aligned_cols=104  Identities=13%  Similarity=0.075  Sum_probs=84.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccCh-hhhhhcCeeEEeEecc----------CCCHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPL-VNACAKEIDILSCFRY----------VNDYPDALEMV   68 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~-~~~~~~~~~l~g~~~~----------~~~~~~~~~~~   68 (112)
                      +|++|||+|.+. +.+++++++++|+++.+|.... ...++. ..++.+++++.|++.+          .+.++++++++
T Consensus       234 ~D~vid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~  312 (349)
T 3pi7_A          234 PRIFLDAVTGPL-ASAIFNAMPKRARWIIYGRLDPDATVIREPGQLIFQHKHIEGFWLSEWMRQFKERRGPAILEAQKRF  312 (349)
T ss_dssp             CCEEEESSCHHH-HHHHHHHSCTTCEEEECCCSCCSCCCCSCTHHHHHSCCEEEECCHHHHHHHTHHHHHHHHHHC-CTT
T ss_pred             CcEEEECCCChh-HHHHHhhhcCCCEEEEEeccCCCCCCCCchhhhhccccEEEEEEehhhhhhCcHHHHHHHHHHHHHH
Confidence            699999998755 6889999999999999996543 566777 7889999999998753          24678888999


Q ss_pred             HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ++|+++  ++++++|||+++++||+.+..+.  .+|+|+.+
T Consensus       313 ~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~--~gKvvl~p  349 (349)
T 3pi7_A          313 SDGRWS--TDVTAVVPLAEAIAWVPAELTKP--NGKVFIRP  349 (349)
T ss_dssp             TTSSCC--C-CCEEEEHHHHHHHHHHHHTSS--SSCEEEEC
T ss_pred             HcCCcc--cccceEEcHHHHHHHHHHHhCCC--CceEEEeC
Confidence            999885  46889999999999999655443  39999875

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=99.64  E-value=1.3e-15  Score=102.43  Aligned_cols=111  Identities=13%  Similarity=0.102  Sum_probs=88.2

Q ss_pred             CcEEEEcccChHHHHHHHhhc-cCCcEEEEEecCCC------ccccC---hhhhhhcCeeEEeEeccC----------CC
Q psy12355          1 MMLYLDPLGTENCLTLGINVT-KMGGKLMLVGMGPQ------MVSVP---LVNACAKEIDILSCFRYV----------ND   60 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l-~~~G~iv~~g~~~~------~~~~~---~~~~~~~~~~l~g~~~~~----------~~   60 (112)
                      +|++|||+|.+.++..+++++ +++|+++.+|....      ....+   ...++.+++++.|++...          +.
T Consensus       232 ~d~v~d~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~  311 (371)
T 3gqv_A          232 LRYALDCITNVESTTFCFAAIGRAGGHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDL  311 (371)
T ss_dssp             CCEEEESSCSHHHHHHHHHHSCTTCEEEEESSCCCC---CCSCEEEEECCGGGGGTSCBSCSTTTCBCCCHHHHHHHHHH
T ss_pred             ccEEEECCCchHHHHHHHHHhhcCCCEEEEEecCccccccccccceeeeeeeeeccccccccccccccccHHHHHHHHHH
Confidence            699999999988899999999 59999999995432      12222   235778999998875432          12


Q ss_pred             HHHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         61 YPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        61 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      ++++++++++|++++.+++++.|+|+++++||+.+.+++....|+|+.+++
T Consensus       312 ~~~~~~l~~~g~l~~~~~~~~~~~l~~~~~A~~~l~~g~~~Gkkvvv~~~~  362 (371)
T 3gqv_A          312 WRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGELSGEKLVVRLEG  362 (371)
T ss_dssp             HHHHHHHHHTTSSCCCCEEEEEECHHHHHHHHHHHHTTCCSSCEEEEEECC
T ss_pred             HHHHHHHHHCCeeeCCcCeecCCcHHHHHHHHHHHHcCCCceEEEEEEeCC
Confidence            457889999999999988888899999999999999988554578887754

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=99.62  E-value=7.5e-16  Score=101.99  Aligned_cols=105  Identities=13%  Similarity=0.173  Sum_probs=84.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEecc--C-----CCHHHHHHHHHcCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRY--V-----NDYPDALEMVASGK   72 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~--~-----~~~~~~~~~~~~g~   72 (112)
                      +|++|||+|. .++.+++++++++|+++.+|...+ +.+++...++.+++++.|++..  .     +.++++++++.+|+
T Consensus       218 ~d~vid~~g~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g~  296 (330)
T 1tt7_A          218 WQGAVDPVGG-KQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQ  296 (330)
T ss_dssp             EEEEEESCCT-HHHHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEECCSSSCCHHHHHHHHHHTTTTSCCSC
T ss_pred             ccEEEECCcH-HHHHHHHHhhcCCCEEEEEecCCCCccCcchHHHHhcCeEEEEEeccccCHHHHHHHHHHHHHHHhcCC
Confidence            5899999988 579999999999999999997654 4667777788999999998521  1     23555666667786


Q ss_pred             CCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         73 CPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        73 ~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +  .++++++|||+++++||+.+.+++ ..+|+|+.+
T Consensus       297 l--~~~i~~~~~l~~~~~A~~~~~~~~-~~gKvvi~~  330 (330)
T 1tt7_A          297 L--LTIVDREVSLEETPGALKDILQNR-IQGRVIVKL  330 (330)
T ss_dssp             S--TTSEEEEECSTTHHHHHHHTTTTC-CSSEEEECC
T ss_pred             c--ccccceEEcHHHHHHHHHHHHcCC-CCCeEEEeC
Confidence            6  456889999999999999998887 359999863

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=99.62  E-value=1.5e-15  Score=101.58  Aligned_cols=107  Identities=17%  Similarity=0.162  Sum_probs=86.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccCh---------hhhhhcCeeEEeEecc------CCCHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPL---------VNACAKEIDILSCFRY------VNDYPDA   64 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~---------~~~~~~~~~l~g~~~~------~~~~~~~   64 (112)
                      +|++|||+|. .++..++++++++|+++.+|.... ...++.         ..++.+++++.|++..      .+.++++
T Consensus       231 ~d~vi~~~G~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~  309 (357)
T 2zb4_A          231 VDVYFDNVGG-NISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQL  309 (357)
T ss_dssp             EEEEEESCCH-HHHHHHHHTEEEEEEEEECCCGGGTTSCCCSSCCCCHHHHHHHHHHTCEEEECCGGGGGGGHHHHHHHH
T ss_pred             CCEEEECCCH-HHHHHHHHHhccCcEEEEECCccccccCccccccchhhhhhhhhcceeEEEEeehhhhhHHHHHHHHHH
Confidence            4899999985 678999999999999999997543 222332         4678899999998642      2568999


Q ss_pred             HHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         65 LEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        65 ~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      ++++.+|++++...  .+|+|+++++||+.+.+++ ..+|+|+.+++
T Consensus       310 ~~l~~~g~l~~~~~--~~~~l~~~~~A~~~~~~~~-~~gKvvi~~~~  353 (357)
T 2zb4_A          310 SQWFKEGKLKIKET--VINGLENMGAAFQSMMTGG-NIGKQIVCISE  353 (357)
T ss_dssp             HHHHHTTCCCCCEE--EEECGGGHHHHHHHHHTTC-CSBEEEEECCC
T ss_pred             HHHHHcCCCcCccc--eecCHHHHHHHHHHHHcCC-CCceEEEEEec
Confidence            99999999987643  4599999999999999887 35999998864

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=99.62  E-value=2e-15  Score=101.27  Aligned_cols=104  Identities=12%  Similarity=0.107  Sum_probs=86.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-------------CCHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-------------NDYPDALEM   67 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-------------~~~~~~~~~   67 (112)
                      +|++|||+|++.++..++++++++|+++.+|.   +.++++..+..+++++.++..+.             +.+++++++
T Consensus       240 ~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~---~~~~~~~~~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  316 (363)
T 4dvj_A          240 PAFVFSTTHTDKHAAEIADLIAPQGRFCLIDD---PSAFDIMLFKRKAVSIHHELMFTRPMFGTPDMSEQGRLLNDVSRL  316 (363)
T ss_dssp             EEEEEECSCHHHHHHHHHHHSCTTCEEEECSC---CSSCCGGGGTTTTCEEEECCTTHHHHHTCTTTHHHHHHHHHHHHH
T ss_pred             ceEEEECCCchhhHHHHHHHhcCCCEEEEECC---CCccchHHHhhccceEEEEEeeccccccCcchhhHHHHHHHHHHH
Confidence            58999999988889999999999999999964   34567777889999999866421             347889999


Q ss_pred             HHcCCCCCccceeeee---CcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         68 VASGKCPVRKLITHNF---KLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        68 ~~~g~~~~~~~~~~~~---~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      +++|++++  .+++++   +++++++||+.+.+++. .+|+|+.+.
T Consensus       317 ~~~g~l~~--~i~~~~~~~~l~~~~~A~~~~~~~~~-~GKvVl~~~  359 (363)
T 4dvj_A          317 VDEGRLRT--TLTNRLSPINAANLKQAHALVESGTA-RGKVVIEGF  359 (363)
T ss_dssp             HHHTSSCC--CEEEEECSCSHHHHHHHHHHHHHTCC-CSEEEEECS
T ss_pred             HHCCCeec--cccceecCCCHHHHHHHHHHHHhCCC-ceEEEEeCc
Confidence            99998865  466655   99999999999999884 589999874

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=99.62  E-value=6.8e-16  Score=101.14  Aligned_cols=104  Identities=16%  Similarity=0.276  Sum_probs=83.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEecc-----CCCHHHHHH---HHHcC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRY-----VNDYPDALE---MVASG   71 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~-----~~~~~~~~~---~~~~g   71 (112)
                      +|++|| +|. .++..++++++++|+++.+|.... ...+++..++.+++++.|+...     .+.++++++   ++.+|
T Consensus       190 ~d~vid-~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~g  267 (302)
T 1iz0_A          190 LDLVLE-VRG-KEVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRLGR  267 (302)
T ss_dssp             EEEEEE-CSC-TTHHHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECCHHHHTTCHHHHHHHHHHHGGGBTT
T ss_pred             ceEEEE-CCH-HHHHHHHHhhccCCEEEEEeCCCCCCCCcCHHHHHhCCCeEEEEeccchhhhHHHHHHHHhhhHHHHcC
Confidence            589999 988 678999999999999999997654 3356777788999999998742     257889999   99999


Q ss_pred             CCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         72 KCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        72 ~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +++  ++++++|||+++++||+.+.+++ ..+|+++.+
T Consensus       268 ~l~--~~i~~~~~l~~~~~A~~~~~~~~-~~gKvvv~~  302 (302)
T 1iz0_A          268 ELR--PVVGPVFPFAEAEAAFRALLDRG-HTGKVVVRL  302 (302)
T ss_dssp             TBC--CCEEEEEEGGGHHHHHHHTTCTT-CCBEEEEEC
T ss_pred             Ccc--cccceEEcHHHHHHHHHHHHcCC-CCceEEEeC
Confidence            875  46889999999999999998877 359999864

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.61  E-value=1.3e-15  Score=100.68  Aligned_cols=105  Identities=15%  Similarity=0.212  Sum_probs=85.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhc-CeeEEeEec--c-------CCCHHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAK-EIDILSCFR--Y-------VNDYPDALEMVA   69 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~-~~~l~g~~~--~-------~~~~~~~~~~~~   69 (112)
                      +|++|||+| ..++..++++++++|+++.+|...+ ...++...++.+ ++++.+...  +       .+.++++++++.
T Consensus       210 ~D~vi~~~g-~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  288 (327)
T 1qor_A          210 VRVVYDSVG-RDTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIA  288 (327)
T ss_dssp             EEEEEECSC-GGGHHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHHTTSCEEECCCHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred             ceEEEECCc-hHHHHHHHHHhcCCCEEEEEecCCCCCCccCHHHHhhccceEEEccchhhhcCCHHHHHHHHHHHHHHHH
Confidence            489999998 6779999999999999999997654 345777778888 888876432  1       245789999999


Q ss_pred             cCCCCCcccee--eeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         70 SGKCPVRKLIT--HNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        70 ~g~~~~~~~~~--~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +|++++  +++  ++|+|+++++||+.+.+++ ..+|+|+.+
T Consensus       289 ~g~l~~--~i~~~~~~~l~~~~~A~~~~~~~~-~~gKvvl~~  327 (327)
T 1qor_A          289 SGVIKV--DVAEQQKYPLKDAQRAHEILESRA-TQGSSLLIP  327 (327)
T ss_dssp             TTSSCC--CCCGGGEEEGGGHHHHHHHHHTTC-CCBCCEEEC
T ss_pred             CCCccc--ccccCcEEcHHHHHHHHHHHHhCC-CCceEEEeC
Confidence            998865  577  8999999999999998877 359998864

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=99.61  E-value=1.9e-15  Score=99.93  Aligned_cols=105  Identities=17%  Similarity=0.157  Sum_probs=84.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCc-cccChhhhhhc-CeeEEeEec----c-CCC----HHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQM-VSVPLVNACAK-EIDILSCFR----Y-VND----YPDALEMVA   69 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~-~~~~~~~~~~~-~~~l~g~~~----~-~~~----~~~~~~~~~   69 (112)
                      +|++|||+|. .++..++++++++|+++.+|...++ ..++...++.+ ++.+.+...    . ..+    ++++++++.
T Consensus       210 ~Dvvid~~g~-~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  288 (325)
T 3jyn_A          210 CPVVYDGVGQ-DTWLTSLDSVAPRGLVVSFGNASGPVSGVNLGILAQKDSVYVTRPTLGSYANNAQNLQTMADELFDMLA  288 (325)
T ss_dssp             EEEEEESSCG-GGHHHHHTTEEEEEEEEECCCTTCCCCSCCTHHHHHTTSCEEECCCHHHHSCSTTHHHHHHHHHHHHHH
T ss_pred             ceEEEECCCh-HHHHHHHHHhcCCCEEEEEecCCCCCCCCCHHHHhhcCcEEEEeeeeeeecCCHHHHHHHHHHHHHHHH
Confidence            5899999987 6689999999999999999987654 36777777777 667665431    1 233    458999999


Q ss_pred             cCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         70 SGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        70 ~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      +|++++.  ++++|||+++++||+.+.+++ ..+|+|+.+
T Consensus       289 ~g~l~~~--i~~~~~l~~~~~A~~~~~~~~-~~Gkvvl~p  325 (325)
T 3jyn_A          289 SGKLKVD--GIEQYALKDAAKAQIELSARR-TTGSTILIP  325 (325)
T ss_dssp             TTSSCCC--CCEEEEGGGHHHHHHHHHTTC-CCSCEEEEC
T ss_pred             CCCeeCc--cccEEcHHHHHHHHHHHHcCC-CCceEEEeC
Confidence            9998775  788999999999999999988 459999864

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=99.60  E-value=1.9e-15  Score=101.29  Aligned_cols=108  Identities=17%  Similarity=0.191  Sum_probs=85.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-c--c--------ccChhhhhhcCeeEEeEecc------CCCHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-M--V--------SVPLVNACAKEIDILSCFRY------VNDYPD   63 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~--~--------~~~~~~~~~~~~~l~g~~~~------~~~~~~   63 (112)
                      +|++|||+|. ..+..++++++++|+++.+|.... .  .        .+ ...++.+++++.|++..      .+.+++
T Consensus       232 ~D~vid~~g~-~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~g~~~~~~~~~~~~~~~~  309 (362)
T 2c0c_A          232 VDVVYESVGG-AMFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTL-PAKLLKKSASVQGFFLNHYLSKYQAAMSH  309 (362)
T ss_dssp             EEEEEECSCT-HHHHHHHHHEEEEEEEEECCCGGGTTSSSCCCCCCCTTH-HHHHHHHTCEEEECCGGGCGGGHHHHHHH
T ss_pred             CCEEEECCCH-HHHHHHHHHHhcCCEEEEEeCCCCcCccccccccccccc-HHHHHhhcceEEEEEhhhhhhhHHHHHHH
Confidence            5899999987 568999999999999999996442 1  1        12 24678899999998743      246889


Q ss_pred             HHHHHHcCCCCCccc------eeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         64 ALEMVASGKCPVRKL------ITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        64 ~~~~~~~g~~~~~~~------~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      +++++++|++++...      +++.++|+++++||+.+.+++ ..+|+|+.+++
T Consensus       310 ~~~l~~~g~l~~~~~~~~~~~~~~~~~l~~~~~A~~~~~~~~-~~gKvvv~~~~  362 (362)
T 2c0c_A          310 LLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYMGK-NTGKIVVELPH  362 (362)
T ss_dssp             HHHHHHTTCSCCCEECSTTSTTCSCBSTTHHHHHHHHHHTTC-CSBEEEEECCC
T ss_pred             HHHHHHCCCeEeeeccccccccccccCHHHHHHHHHHHHcCC-CCceEEEEcCC
Confidence            999999999876533      345689999999999999887 35999998753

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=99.59  E-value=2.6e-15  Score=99.98  Aligned_cols=105  Identities=20%  Similarity=0.188  Sum_probs=86.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC------------CCHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV------------NDYPDALEMV   68 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~------------~~~~~~~~~~   68 (112)
                      +|++|||+|. ..+..++++++++|+++.+|...   .++...+..+++++.+++.+.            +.++++++++
T Consensus       217 ~D~vid~~g~-~~~~~~~~~l~~~G~iv~~g~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~  292 (343)
T 3gaz_A          217 FDLVYDTLGG-PVLDASFSAVKRFGHVVSCLGWG---THKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALV  292 (343)
T ss_dssp             EEEEEESSCT-HHHHHHHHHEEEEEEEEESCCCS---CCCCHHHHHTTCEEEECCTTHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred             ceEEEECCCc-HHHHHHHHHHhcCCeEEEEcccC---ccccchhhhcCcEEEEEEeccchhcccchHHHHHHHHHHHHHH
Confidence            5899999986 56899999999999999998654   345667888999999976421            4688999999


Q ss_pred             HcCCCCCcccee-eeeCcccHHHHHHHHhcCCC---CceEEEEeeCC
Q psy12355         69 ASGKCPVRKLIT-HNFKLEEAVEAFKTASKKAD---DTIKIMIHCRQ  111 (112)
Q Consensus        69 ~~g~~~~~~~~~-~~~~l~~~~~a~~~~~~~~~---~~~k~v~~~~~  111 (112)
                      .+|++++  +++ ++|||+++++||+.+.+++.   ..||+++++..
T Consensus       293 ~~g~l~~--~i~~~~~~l~~~~~A~~~~~~~~~~Gr~~GK~v~~~~~  337 (343)
T 3gaz_A          293 QTGKLAP--RLDPRTFSIAEIGSAYDAVLGRNDVPRQRGKIAITVEG  337 (343)
T ss_dssp             HTTCCCC--CBCSCCEETTCHHHHHHHHHTCTTCCCCSSBCEEECC-
T ss_pred             HCCCccc--CccCcEecHHHHHHHHHHHHcCCCcccccceEEEEecc
Confidence            9998864  677 79999999999999998873   25899998753

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=99.57  E-value=8.3e-16  Score=102.22  Aligned_cols=108  Identities=9%  Similarity=0.169  Sum_probs=81.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhh-hcCeeEEeEec-----------cCCCHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNAC-AKEIDILSCFR-----------YVNDYPDALEMV   68 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~-~~~~~l~g~~~-----------~~~~~~~~~~~~   68 (112)
                      +|++|||+|.+. ...++++++++|+++.+|.... .+++...+. ..++.+...+.           ....++++++++
T Consensus       214 ~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  291 (340)
T 3gms_A          214 ADAAIDSIGGPD-GNELAFSLRPNGHFLTIGLLSG-IQVNWAEIVTKAKVHANIFHLRHWNDEVSPYKWQETFRHLIRLV  291 (340)
T ss_dssp             EEEEEESSCHHH-HHHHHHTEEEEEEEEECCCTTS-CCCCHHHHHHTSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             CcEEEECCCChh-HHHHHHHhcCCCEEEEEeecCC-CCCCHHHhhhcccceEEEEEehhhhhhcCHHHHHHHHHHHHHHH
Confidence            589999998766 4567799999999999997654 233443333 24455444331           125788999999


Q ss_pred             HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      ++|++++.+ ++++|||+++++||+.+.+++...+|+++.+.+
T Consensus       292 ~~g~l~~~~-i~~~~~l~~~~~A~~~~~~~~~~~GKvvl~~~~  333 (340)
T 3gms_A          292 ENEQLRFMK-VHSTYELADVKAAVDVVQSAEKTKGKVFLTSYE  333 (340)
T ss_dssp             HTTSSCCCC-EEEEEEGGGHHHHHHHHHCTTCCSSEEEEECC-
T ss_pred             HcCCCcccc-ccEEEeHHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence            999998765 688999999999999999987334999998754

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.57  E-value=1.3e-14  Score=96.16  Aligned_cols=105  Identities=19%  Similarity=0.201  Sum_probs=84.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC------cc-ccChhhhhhcCeeEEeEeccC-------CCHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ------MV-SVPLVNACAKEIDILSCFRYV-------NDYPDALE   66 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~------~~-~~~~~~~~~~~~~l~g~~~~~-------~~~~~~~~   66 (112)
                      +|++|||+|. ..+..++++++++|+++.+|....      .. ..+...++.+++++.|++.+.       +.++++++
T Consensus       215 ~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~  293 (333)
T 1v3u_A          215 YDCYFDNVGG-EFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMK  293 (333)
T ss_dssp             EEEEEESSCH-HHHHHHHTTEEEEEEEEECCCCC-------CCBCCCHHHHHHTTCEEEECCGGGCCTHHHHHHHHHHHH
T ss_pred             CeEEEECCCh-HHHHHHHHHHhcCCEEEEEeccccccCCCCCCCCcCHHHHhhcCceEEEEehhhcchHHHHHHHHHHHH
Confidence            4899999986 458999999999999999997543      11 135667889999999987532       45778999


Q ss_pred             HHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         67 MVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        67 ~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ++.+|++++...+  .++|+++++||+.+.+++ ..+|+|+.+
T Consensus       294 l~~~g~l~~~~~~--~~~l~~~~~A~~~~~~~~-~~gKvvl~~  333 (333)
T 1v3u_A          294 WVLEGKIQYHEHV--TKGFENMPAAFIEMLNGA-NLGKAVVTA  333 (333)
T ss_dssp             HHHTTSSCCCEEE--EECGGGHHHHHHHHHTTC-CSBEEEEEC
T ss_pred             HHHCCCccCcccc--ccCHHHHHHHHHHHHcCC-CCceEEEeC
Confidence            9999999876544  479999999999999887 359999864

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=99.56  E-value=2.3e-15  Score=99.59  Aligned_cols=104  Identities=13%  Similarity=0.176  Sum_probs=81.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEecc--C-----CCHHHHHHHHHcCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRY--V-----NDYPDALEMVASGK   72 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~--~-----~~~~~~~~~~~~g~   72 (112)
                      +|++|||+|. .++.+++++++++|+++.+|...+ +.++++..++.+++++.|+...  .     +.++++.+++.+| 
T Consensus       217 ~d~vid~~g~-~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g-  294 (328)
T 1xa0_A          217 WAAAVDPVGG-RTLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDSVYCPMDLRLRIWERLAGDLKPD-  294 (328)
T ss_dssp             EEEEEECSTT-TTHHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECCSSSCCHHHHHHHHHHHHTTTCCC-
T ss_pred             ccEEEECCcH-HHHHHHHHhhccCCEEEEEeecCCCCCCCchhhhhhcCceEEEEecccCCHHHHHHHHHHHHHHHHcC-
Confidence            5899999988 468999999999999999997654 4566777788999999997421  1     2345555555566 


Q ss_pred             CCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         73 CPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        73 ~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      +  .+ ++++|+|+++++||+.+.+++. .+|+|+.++
T Consensus       295 l--~~-~~~~~~l~~~~~A~~~~~~~~~-~gKvvv~~~  328 (328)
T 1xa0_A          295 L--ER-IAQEISLAELPQALKRILRGEL-RGRTVVRLA  328 (328)
T ss_dssp             H--HH-HEEEEEGGGHHHHHHHHHHTCC-CSEEEEECC
T ss_pred             C--ce-eeeEeCHHHHHHHHHHHHcCCC-CCeEEEEeC
Confidence            4  33 4689999999999999998873 599999763

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=99.54  E-value=2.4e-14  Score=95.70  Aligned_cols=104  Identities=17%  Similarity=0.295  Sum_probs=81.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEecc--C-CCHH----HHHHHHHcCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY--V-NDYP----DALEMVASGKC   73 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~--~-~~~~----~~~~~~~~g~~   73 (112)
                      +|++|||+|.+ .+..++++++++|+++.+|.. ++.+++...++.+++++.|+...  . .+++    ++.+++.+|++
T Consensus       240 ~D~vi~~~G~~-~~~~~~~~l~~~G~iv~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~~~~g~l  317 (351)
T 1yb5_A          240 IDIIIEMLANV-NLSKDLSLLSHGGRVIVVGSR-GTIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAGMEIGWL  317 (351)
T ss_dssp             EEEEEESCHHH-HHHHHHHHEEEEEEEEECCCC-SCEEECTHHHHTTTCEEEECCGGGCCHHHHHHHHHHHHHHHHHTCC
T ss_pred             cEEEEECCChH-HHHHHHHhccCCCEEEEEecC-CCCccCHHHHHhCCcEEEEEEeecCCHHHHHHHHHHHHHHHHCCCc
Confidence            58999999864 689999999999999999964 34566777788999999998532  2 3444    45567778876


Q ss_pred             CCccceeeeeCcccHHHHHHH-HhcCCCCceEEEEee
Q psy12355         74 PVRKLITHNFKLEEAVEAFKT-ASKKADDTIKIMIHC  109 (112)
Q Consensus        74 ~~~~~~~~~~~l~~~~~a~~~-~~~~~~~~~k~v~~~  109 (112)
                      +  ++++++|||+++++|++. +++++ ..+|+|+.+
T Consensus       318 ~--~~i~~~~~l~~~~~A~~~~~~~~~-~~gKvvi~~  351 (351)
T 1yb5_A          318 K--PVIGSQYPLEKVAEAHENIIHGSG-ATGKMILLL  351 (351)
T ss_dssp             C--CCEEEEEEGGGHHHHHHHHHHSSC-CSSEEEEEC
T ss_pred             c--CccceEEcHHHHHHHHHHHHHhCC-CCeEEEEeC
Confidence            4  568899999999999999 55554 359999864

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=99.54  E-value=7e-16  Score=101.62  Aligned_cols=105  Identities=15%  Similarity=0.229  Sum_probs=71.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccC--hhhhhhcCeeEEeEeccC---------CCHHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVP--LVNACAKEIDILSCFRYV---------NDYPDALEMVA   69 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~--~~~~~~~~~~l~g~~~~~---------~~~~~~~~~~~   69 (112)
                      +|++|||+|.+. +..++++++++|+++.+|.......++  ...+..+++++.+++.+.         +.+++++++++
T Consensus       200 ~Dvv~d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  278 (315)
T 3goh_A          200 YFAIFDAVNSQN-AAALVPSLKANGHIICIQDRIPAPIDPAFTRTISYHEIALGALHDFGDRQDWQILMQQGEALLTLIA  278 (315)
T ss_dssp             EEEEECC--------TTGGGEEEEEEEEEECCC----------CCSEEEEECGGGHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccEEEECCCchh-HHHHHHHhcCCCEEEEEeCCCCccccchhhhcceeeEEEeecccccCChhHHHHHHHHHHHHHHHHH
Confidence            589999999866 588999999999999998654322222  223455555555554322         24678999999


Q ss_pred             cCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         70 SGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        70 ~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      +|+++  ++++++|||+++++||+.+. +.  .+|+|+.+++
T Consensus       279 ~g~l~--~~i~~~~~l~~~~~A~~~~~-~~--~gKvvi~~~~  315 (315)
T 3goh_A          279 QGKME--IAAPDIFRFEQMIEALDHSE-QT--KLKTVLTLNE  315 (315)
T ss_dssp             TTSSC--CCCCEEEEGGGHHHHHHHHH-HH--CCCEEEESCC
T ss_pred             CCCcc--cccceEecHHHHHHHHHHHH-hc--CCcEEEEecC
Confidence            99875  57889999999999999998 44  3999999864

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.48  E-value=1.9e-13  Score=99.51  Aligned_cols=105  Identities=12%  Similarity=0.152  Sum_probs=81.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEecc-------CCCHHHHHHHHHcCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY-------VNDYPDALEMVASGKC   73 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~-------~~~~~~~~~~~~~g~~   73 (112)
                      +|+||||+|. +.+..++++++++||++.+|........... ...+++++.+....       .+.++++++++.+|++
T Consensus       413 vDvVld~~gg-~~~~~~l~~l~~~Gr~v~iG~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~g~l  490 (795)
T 3slk_A          413 VDVVLNSLAG-EFADASLRMLPRGGRFLELGKTDVRDPVEVA-DAHPGVSYQAFDTVEAGPQRIGEMLHELVELFEGRVL  490 (795)
T ss_dssp             CSEEEECCCT-TTTHHHHTSCTTCEEEEECCSTTCCCHHHHH-HHSSSEEEEECCGGGGHHHHHHHHHHHHHHHHHTTSC
T ss_pred             eEEEEECCCc-HHHHHHHHHhcCCCEEEEeccccccCccccc-ccCCCCEEEEeeccccCHHHHHHHHHHHHHHHHcCCc
Confidence            6999999987 5589999999999999999976542222221 22467776665421       1568899999999988


Q ss_pred             CCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355         74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR  110 (112)
Q Consensus        74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~  110 (112)
                      ++  +++++||++|+++||+.+.+++ ..+|+|+.++
T Consensus       491 ~p--~~~~~~~l~~~~eA~~~l~~g~-~~GKvVl~~~  524 (795)
T 3slk_A          491 EP--LPVTAWDVRQAPEALRHLSQAR-HVGKLVLTMP  524 (795)
T ss_dssp             CC--CCEEEEEGGGHHHHHHHHHHTC-CCBEEEEECC
T ss_pred             CC--CcceeEcHHHHHHHHHHHhcCC-ccceEEEecC
Confidence            65  5788999999999999999988 4599999875

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=99.45  E-value=1.6e-13  Score=92.35  Aligned_cols=106  Identities=18%  Similarity=0.197  Sum_probs=78.6

Q ss_pred             CcEEEEcccCh-HHHHHHHhhccCCcEEEEEecCCCc-cc---cCh------hhhhh-------cCeeEEeEeccC--CC
Q psy12355          1 MMLYLDPLGTE-NCLTLGINVTKMGGKLMLVGMGPQM-VS---VPL------VNACA-------KEIDILSCFRYV--ND   60 (112)
Q Consensus         1 ~D~v~d~~g~~-~~~~~~~~~l~~~G~iv~~g~~~~~-~~---~~~------~~~~~-------~~~~l~g~~~~~--~~   60 (112)
                      +|++|||+|.+ .++..++++++++|+++.+|..... ..   ++.      ..++.       ++..+.+.....  +.
T Consensus       249 ~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  328 (375)
T 2vn8_A          249 FDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFFMASGPC  328 (375)
T ss_dssp             BSEEEESSCTTHHHHGGGGBCSSSCCEEEESCCSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEECCCCCCHHH
T ss_pred             CCEEEECCCChhhhhHHHHHhhcCCcEEEEeCCCcccccccccccchhheeehhhccccccccccCcceEEEEeCCCHHH
Confidence            59999999987 5678999999999999999965431 11   111      11222       344544433222  46


Q ss_pred             HHHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355         61 YPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC  109 (112)
Q Consensus        61 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~  109 (112)
                      ++++++++.+|+++  ++++++|||+++++||+.+.+++ ..+|+|+.+
T Consensus       329 ~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~-~~gKvvi~~  374 (375)
T 2vn8_A          329 LDDIAELVDAGKIR--PVIEQTFPFSKVPEAFLKVERGH-ARGKTVINV  374 (375)
T ss_dssp             HHHHHHHHHTTSCC--CCEEEEEEGGGHHHHHHHHHHCC-CSSEEEEEC
T ss_pred             HHHHHHHHHCCCcc--cCcCeEECHHHHHHHHHHHHcCC-CCCeEEEEe
Confidence            79999999999875  57889999999999999999887 348999875

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=99.36  E-value=2.5e-13  Score=91.61  Aligned_cols=107  Identities=10%  Similarity=0.103  Sum_probs=78.1

Q ss_pred             CcEEEEcccChHHHHHHHhhcc-----CC-----------cEEEEEecCCCccccChhhhhhcCeeEEeEeccC------
Q psy12355          1 MMLYLDPLGTENCLTLGINVTK-----MG-----------GKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV------   58 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~-----~~-----------G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~------   58 (112)
                      +|++|||+|.+..+.+++++++     ++           |+++.+|.... .++++..++.+++++.|++...      
T Consensus       241 ~d~v~d~~g~~~~~~~~~~~l~~~~~r~~G~~~~~G~~~~g~iv~~G~~~~-~~~~~~~~~~~~~~i~g~~~~~~~~~~~  319 (379)
T 3iup_A          241 ATIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDT-SPTEFNRNFGMAWGMGGWLLFPFLQKIG  319 (379)
T ss_dssp             CCEEEESCEEESHHHHHHHHHHHHHHTTCCSCCTTCCCSCEEEEECCCSEE-EEEEECCCSCSCEEEEECCHHHHHHHHC
T ss_pred             ceEEEECCCchhhHHHHHHhcchhhhccccceeecccccCceEEEecCCCC-CccccccccccceEEEEEEeeeecccCC
Confidence            6999999998877888888885     44           56666654332 2334456678899999976421      


Q ss_pred             -CC----HHHHHHHHHcCCCCCccceeeeeCcccH--HHHHHHHhcCCCCceEEEEeeCCC
Q psy12355         59 -ND----YPDALEMVASGKCPVRKLITHNFKLEEA--VEAFKTASKKADDTIKIMIHCRQG  112 (112)
Q Consensus        59 -~~----~~~~~~~~~~g~~~~~~~~~~~~~l~~~--~~a~~~~~~~~~~~~k~v~~~~~~  112 (112)
                       +.    ++++++++.+ .  +.++++++|||+++  ++||+.+.+++ ..+|+|+.++++
T Consensus       320 ~~~~~~~~~~~~~~~~~-~--l~~~i~~~~~l~~~~~~~A~~~l~~~~-~~gKvVv~~~~g  376 (379)
T 3iup_A          320 RERANALKQRVVAELKT-T--FASHYSKEISLAEVLDLDMIAVYNKRA-TGEKYLINPNKG  376 (379)
T ss_dssp             HHHHHHHHHHHHHTTTT-T--TCCCCSEEEEHHHHTCHHHHHHHTTCC-TTCCEEEETTTT
T ss_pred             HHHHHHHHHHHHHHHhc-c--CCCcceEEecHHHhhhHHHHHHHhcCC-CCceEEEeCCCC
Confidence             22    3555566666 3  45578899999999  99999999987 459999998764

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.18  E-value=3.7e-11  Score=95.50  Aligned_cols=107  Identities=16%  Similarity=0.193  Sum_probs=80.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCc-cccChhhhhhcCeeEEeEecc------CCCHHHHHHHHH----
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQM-VSVPLVNACAKEIDILSCFRY------VNDYPDALEMVA----   69 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~-~~~~~~~~~~~~~~l~g~~~~------~~~~~~~~~~~~----   69 (112)
                      +|+||||+| .+.+..++++++++|+++.+|..... .......++.+++++.++...      ...++++++++.    
T Consensus      1741 vDvVld~~g-~~~l~~~l~~L~~~Gr~V~iG~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~l~~l~~~~~ 1819 (2512)
T 2vz8_A         1741 VDLVLNSLA-EEKLQASVRCLAQHGRFLEIGKFDLSNNHALGMAVFLKNVTFHGILLDSLFEEGGATWQEVSELLKAGIQ 1819 (2512)
T ss_dssp             EEEEEECCC-HHHHHHHHTTEEEEEEEEECCCHHHHTTCEEEGGGGGGCCEEEECCGGGTTSSCCHHHHHHHHHHHHHHT
T ss_pred             ceEEEECCC-chHHHHHHHhcCCCcEEEEeecccccccCcccccccccCCcEEEeeHHHHhhhCHHHHHHHHHHHHHHHH
Confidence            589999996 67799999999999999999954321 111224567789999987642      134566666554    


Q ss_pred             cCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355         70 SGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ  111 (112)
Q Consensus        70 ~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~  111 (112)
                      +|.++  ++++++||++++++|++.+.+++. .+|+|+.++.
T Consensus      1820 ~g~l~--p~i~~~f~l~ei~eA~~~l~~g~~-~GKvVi~~~~ 1858 (2512)
T 2vz8_A         1820 EGVVQ--PLKCTVFPRTKVEAAFRYMAQGKH-IGKVVIQVRE 1858 (2512)
T ss_dssp             TTCSC--CCCEEEEESSTHHHHHHHHHTTCC-SSEEEEECSC
T ss_pred             cCCcC--CCcceEecHHHHHHHHHhhhccCc-cceEEEECCC
Confidence            56554  468899999999999999998884 5899998753

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=98.59  E-value=3.2e-08  Score=60.85  Aligned_cols=74  Identities=23%  Similarity=0.251  Sum_probs=55.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEec------c----CCCHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFR------Y----VNDYPDALEMV   68 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~------~----~~~~~~~~~~~   68 (112)
                      +|+++|++|. ..+..++++++++|+++.+|....  ..++++. .+.+++++.+...      .    .+.++++++++
T Consensus       108 ~D~vi~~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  185 (198)
T 1pqw_A          108 VDVVLNSLAG-EAIQRGVQILAPGGRFIELGKKDVYADASLGLA-ALAKSASFSVVDLDLNLKLQPARYRQLLQHILQHV  185 (198)
T ss_dssp             EEEEEECCCT-HHHHHHHHTEEEEEEEEECSCGGGTTTCEEEGG-GGTTTCEEEECCHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CeEEEECCch-HHHHHHHHHhccCCEEEEEcCCCCcCcCcCChh-HhcCCcEEEEEehHHhhccCHHHHHHHHHHHHHHH
Confidence            4899999975 668999999999999999997542  2233332 3468888886421      1    25688999999


Q ss_pred             HcCCCCCc
Q psy12355         69 ASGKCPVR   76 (112)
Q Consensus        69 ~~g~~~~~   76 (112)
                      .+|++++.
T Consensus       186 ~~g~l~~~  193 (198)
T 1pqw_A          186 ADGKLEVL  193 (198)
T ss_dssp             HTTSSCCC
T ss_pred             HcCCccCC
Confidence            99998774

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.36  E-value=2.6e-06  Score=59.42  Aligned_cols=96  Identities=9%  Similarity=0.141  Sum_probs=61.3

Q ss_pred             CcEEEEcccChHHHH-HHHhhccCCcEEEEEecCCCccccChhhhhhcCe---eEEeEec-cC-CCHHHHHHHHHcCCCC
Q psy12355          1 MMLYLDPLGTENCLT-LGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEI---DILSCFR-YV-NDYPDALEMVASGKCP   74 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~-~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~---~l~g~~~-~~-~~~~~~~~~~~~g~~~   74 (112)
                      +|++++|+|....+. ..++.++++|+++.+|...  .+++...+..+.+   ++.+... +. ..+...+.++.+|++.
T Consensus       330 aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG~~~--~eId~~aL~~~aL~~~~I~~~ldv~~~~~~~~~l~LL~~grlv  407 (494)
T 3ce6_A          330 ADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFD--NEIDMAGLERSGATRVNVKPQVDLWTFGDTGRSIIVLSEGRLL  407 (494)
T ss_dssp             CSEEEECSSSSCSBCHHHHHHSCTTCEEEECSSSG--GGBCHHHHHHTTCEEEEEETTEEEEECTTTCCEEEEEGGGSCH
T ss_pred             CCEEEECCCCHHHHHHHHHHhcCCCcEEEEeCCCC--CccCHHHHHHhhhccceEEEEEEEeecCCcchHHHHHhCCCEE
Confidence            599999999887666 7899999999999998654  3466666655443   4554321 11 1112233345556552


Q ss_pred             --------CccceeeeeCcccHHHHHHHHhcCC
Q psy12355         75 --------VRKLITHNFKLEEAVEAFKTASKKA   99 (112)
Q Consensus        75 --------~~~~~~~~~~l~~~~~a~~~~~~~~   99 (112)
                              +...+++.+ ++++.++++.+.+++
T Consensus       408 nL~~~TPH~a~~~~~s~-~~qa~~ai~~~~~g~  439 (494)
T 3ce6_A          408 NLGNATGHPSFVMSNSF-ANQTIAQIELWTKND  439 (494)
T ss_dssp             HHHHSCCSCHHHHHHHH-HHHHHHHHHHHHTGG
T ss_pred             eccCCCCCccccchHHH-HHHHHHHHHHHHcCC
Confidence                    222333444 678899999988765

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.04  E-value=0.00011  Score=49.62  Aligned_cols=97  Identities=9%  Similarity=0.008  Sum_probs=63.9

Q ss_pred             CcEEEEcc---cChH--H-HHHHHhhccCCcEEEEEecCC-Cccc--cChhhhhhcCeeEEeEeccC-CCHHHHHHHHHc
Q psy12355          1 MMLYLDPL---GTEN--C-LTLGINVTKMGGKLMLVGMGP-QMVS--VPLVNACAKEIDILSCFRYV-NDYPDALEMVAS   70 (112)
Q Consensus         1 ~D~v~d~~---g~~~--~-~~~~~~~l~~~G~iv~~g~~~-~~~~--~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~   70 (112)
                      +|++++|+   |.+.  . ....++.++++|.++.+|... +..+  .+...+..+++++.|+...+ ...+++.+++.+
T Consensus       258 aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~~p~~~~~~a~~l~~~  337 (384)
T 1l7d_A          258 TDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAK  337 (384)
T ss_dssp             CSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSSGGGGGHHHHHHHHHH
T ss_pred             CCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCCCCCeecccCCcEEEECCEEEEEeCCCcchhHHHHHHHHHH
Confidence            59999999   5322  2 367899999999999999643 2332  24445667889999987665 446678999988


Q ss_pred             CCCCCcccee-e---eeCcccHHHHHHHHhc
Q psy12355         71 GKCPVRKLIT-H---NFKLEEAVEAFKTASK   97 (112)
Q Consensus        71 g~~~~~~~~~-~---~~~l~~~~~a~~~~~~   97 (112)
                      +.+++-..+. .   .+.++.-.++++....
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  368 (384)
T 1l7d_A          338 NLLNFLTPHVDKDTKTLVMKLEDETVSGTCV  368 (384)
T ss_dssp             HHHHHHGGGEETTTTEECCCTTCHHHHHHEE
T ss_pred             hHHHHHHHHHhCCcchhhccccCHHHhcCeE
Confidence            8765432222 1   3444545556655433

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.77  E-value=0.00076  Score=45.21  Aligned_cols=71  Identities=8%  Similarity=0.009  Sum_probs=51.6

Q ss_pred             CcEEEEcccChHH------HHHHHhhccCCcEEEEEecCCC-------ccccChhhhhhcCeeEEeEeccC---------
Q psy12355          1 MMLYLDPLGTENC------LTLGINVTKMGGKLMLVGMGPQ-------MVSVPLVNACAKEIDILSCFRYV---------   58 (112)
Q Consensus         1 ~D~v~d~~g~~~~------~~~~~~~l~~~G~iv~~g~~~~-------~~~~~~~~~~~~~~~l~g~~~~~---------   58 (112)
                      +|++++|+|.+..      ....++.++++|+++.++...+       +.+++...+..+++++.+....+         
T Consensus       231 ~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~  310 (361)
T 1pjc_A          231 ADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQ  310 (361)
T ss_dssp             CSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHHH
T ss_pred             CCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHHH
Confidence            6999999987652      5678899999999999997543       23455556778888888754211         


Q ss_pred             ----CCHHHHHHHHHcC
Q psy12355         59 ----NDYPDALEMVASG   71 (112)
Q Consensus        59 ----~~~~~~~~~~~~g   71 (112)
                          ..++.+++++.+|
T Consensus       311 ~~~~~~~~~l~~l~~~G  327 (361)
T 1pjc_A          311 ALNNSTLPYVVKLANQG  327 (361)
T ss_dssp             HHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHhCC
Confidence                3356677888777

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.66  E-value=0.00073  Score=45.42  Aligned_cols=71  Identities=10%  Similarity=0.068  Sum_probs=42.6

Q ss_pred             CcEEEEcccChHH------HHHHHhhccCCcEEEEEecCCC-------ccccChhhhhhcCeeEEeEecc----------
Q psy12355          1 MMLYLDPLGTENC------LTLGINVTKMGGKLMLVGMGPQ-------MVSVPLVNACAKEIDILSCFRY----------   57 (112)
Q Consensus         1 ~D~v~d~~g~~~~------~~~~~~~l~~~G~iv~~g~~~~-------~~~~~~~~~~~~~~~l~g~~~~----------   57 (112)
                      +|++++|+|.+..      ...+++.++++|+++.+|...+       +.+++...+..+++++.+....          
T Consensus       230 ~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~  309 (369)
T 2eez_A          230 ADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTF  309 (369)
T ss_dssp             CSEEEECCC-------CCSCHHHHTTSCTTCEEEECC-------------------CEETTEEEECCSCSGGGSHHHHHH
T ss_pred             CCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcchhcHHHHHH
Confidence            5999999987642      5778999999999999986543       2334444566788887775421          


Q ss_pred             ---CCCHHHHHHHHHcC
Q psy12355         58 ---VNDYPDALEMVASG   71 (112)
Q Consensus        58 ---~~~~~~~~~~~~~g   71 (112)
                         ...++.+++++.+|
T Consensus       310 ~~~~~~~~~l~~l~~~g  326 (369)
T 2eez_A          310 ALTNQTLPYVLKLAEKG  326 (369)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence               13456777777777

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.38  E-value=0.0036  Score=42.22  Aligned_cols=55  Identities=7%  Similarity=-0.013  Sum_probs=41.1

Q ss_pred             CcEEEEcccChHH------HHHHHhhccCCcEEEEEecCC-------CccccChhhhhhcCeeEEeEe
Q psy12355          1 MMLYLDPLGTENC------LTLGINVTKMGGKLMLVGMGP-------QMVSVPLVNACAKEIDILSCF   55 (112)
Q Consensus         1 ~D~v~d~~g~~~~------~~~~~~~l~~~G~iv~~g~~~-------~~~~~~~~~~~~~~~~l~g~~   55 (112)
                      +|++++|++.+.+      ....++.++++|+++.+|...       ++.+++...+..+++.+.+..
T Consensus       232 aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va~~~Ggv~e~~ep~~~~~~~~~~~~v~i~~~p  299 (377)
T 2vhw_A          232 ADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYCVA  299 (377)
T ss_dssp             CSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGGGGTTCSBTTCCCBCSSSCEEEETTEEEECBT
T ss_pred             CCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEecCCCCccccccCCCCCCCEEEECCEEEEecC
Confidence            5999999987654      577899999999999999643       234455555667888877654

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.07  E-value=0.0034  Score=42.71  Aligned_cols=73  Identities=3%  Similarity=0.025  Sum_probs=48.4

Q ss_pred             CcEEEEcccCh-----HHH-HHHHhhccCCcEEEEEecCC-CccccChh---hhhhcCeeEEeEeccCCCH-HHHHHHHH
Q psy12355          1 MMLYLDPLGTE-----NCL-TLGINVTKMGGKLMLVGMGP-QMVSVPLV---NACAKEIDILSCFRYVNDY-PDALEMVA   69 (112)
Q Consensus         1 ~D~v~d~~g~~-----~~~-~~~~~~l~~~G~iv~~g~~~-~~~~~~~~---~~~~~~~~l~g~~~~~~~~-~~~~~~~~   69 (112)
                      +|++++|++.+     ..+ ...++.++++|.++.+|... +.++....   .+..+++++.|+...+..+ +++.+++.
T Consensus       256 aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~~~~~~p~~~~~gv~i~g~~~~p~~~~~~a~~ll~  335 (401)
T 1x13_A          256 VDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTDLPGRLPTQSSQLYG  335 (401)
T ss_dssp             CSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTSEEECTTSCEEECCSCTGGGSHHHHHHHHH
T ss_pred             CCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCcccCCCceEEECCEEEEeeCCCcccCHHHHHHHHH
Confidence            59999996332     222 57899999999999999753 33443322   2667889999877655333 34666666


Q ss_pred             cCCC
Q psy12355         70 SGKC   73 (112)
Q Consensus        70 ~g~~   73 (112)
                      ++.+
T Consensus       336 ~~~~  339 (401)
T 1x13_A          336 TNLV  339 (401)
T ss_dssp             HHHH
T ss_pred             HhHH
Confidence            5543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=92.73  E-value=0.16  Score=31.48  Aligned_cols=32  Identities=6%  Similarity=-0.108  Sum_probs=27.4

Q ss_pred             CcEEEEcccCh-HHHHHHHhhccCCcEEEEEec
Q psy12355          1 MMLYLDPLGTE-NCLTLGINVTKMGGKLMLVGM   32 (112)
Q Consensus         1 ~D~v~d~~g~~-~~~~~~~~~l~~~G~iv~~g~   32 (112)
                      +|+|+...+.+ ..+..+.+.|+++|+++....
T Consensus       159 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          159 FHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             BSEEEECSSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             ccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            58999887766 778999999999999998864

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=90.43  E-value=0.45  Score=31.21  Aligned_cols=33  Identities=3%  Similarity=-0.074  Sum_probs=26.2

Q ss_pred             CcEEEEcccCh---HHHHHHHhhccCCcEEEEEecC
Q psy12355          1 MMLYLDPLGTE---NCLTLGINVTKMGGKLMLVGMG   33 (112)
Q Consensus         1 ~D~v~d~~g~~---~~~~~~~~~l~~~G~iv~~g~~   33 (112)
                      ||+|+.+...+   ..+..+.+.|+|||+++.....
T Consensus       189 FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          189 FDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             CSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             cCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence            68998765443   5788899999999999987643

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=89.99  E-value=0.55  Score=28.54  Aligned_cols=34  Identities=6%  Similarity=-0.163  Sum_probs=25.1

Q ss_pred             CcEEEEcccCh-HHHHHHHhhccCCcEEEEEecCC
Q psy12355          1 MMLYLDPLGTE-NCLTLGINVTKMGGKLMLVGMGP   34 (112)
Q Consensus         1 ~D~v~d~~g~~-~~~~~~~~~l~~~G~iv~~g~~~   34 (112)
                      +|+|+...+.. ..+..+.+.|+++|+++......
T Consensus       123 ~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  157 (204)
T 3njr_A          123 PEAVFIGGGGSQALYDRLWEWLAPGTRIVANAVTL  157 (204)
T ss_dssp             CSEEEECSCCCHHHHHHHHHHSCTTCEEEEEECSH
T ss_pred             CCEEEECCcccHHHHHHHHHhcCCCcEEEEEecCc
Confidence            57888654332 26888999999999999876543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=89.67  E-value=0.5  Score=27.54  Aligned_cols=34  Identities=12%  Similarity=0.094  Sum_probs=24.8

Q ss_pred             CcEEEEcccCh--HHHHHHHhhccCCcEEEEEecCC
Q psy12355          1 MMLYLDPLGTE--NCLTLGINVTKMGGKLMLVGMGP   34 (112)
Q Consensus         1 ~D~v~d~~g~~--~~~~~~~~~l~~~G~iv~~g~~~   34 (112)
                      ||+|+-..+..  ..+..+.+.|+++|+++......
T Consensus        95 ~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  130 (178)
T 3hm2_A           95 PDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAVTV  130 (178)
T ss_dssp             CSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEECSH
T ss_pred             CCEEEECCcccHHHHHHHHHHhcCCCCEEEEEeecc
Confidence            57888544332  37899999999999999876433

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=89.15  E-value=0.26  Score=29.33  Aligned_cols=21  Identities=14%  Similarity=0.295  Sum_probs=17.4

Q ss_pred             HHHHHHHhhccCCcEEEEEec
Q psy12355         12 NCLTLGINVTKMGGKLMLVGM   32 (112)
Q Consensus        12 ~~~~~~~~~l~~~G~iv~~g~   32 (112)
                      ..+..+.+.|++||+++..-.
T Consensus       126 ~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A          126 TLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHHHHHhcCCCEEEEEec
Confidence            457788999999999998754

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=88.64  E-value=0.21  Score=34.45  Aligned_cols=38  Identities=13%  Similarity=0.147  Sum_probs=30.7

Q ss_pred             CcEEEEcccChHHHH-HHHhhccCCcEEEEEecCCCccc
Q psy12355          1 MMLYLDPLGTENCLT-LGINVTKMGGKLMLVGMGPQMVS   38 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~-~~~~~l~~~G~iv~~g~~~~~~~   38 (112)
                      +|+++.|+|+...+. ..++.+++++.++.+|.++..+.
T Consensus       276 ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg~~EId  314 (435)
T 3gvp_A          276 VDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEID  314 (435)
T ss_dssp             CSEEEECSSCSCSBCHHHHHHSCTTEEEEECSSTTTTBT
T ss_pred             CCEEEECCCCcccCCHHHHHhcCCCcEEEEecCCCccCC
Confidence            589999998777665 78999999999999987654343

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=88.39  E-value=1.7  Score=28.42  Aligned_cols=69  Identities=13%  Similarity=0.078  Sum_probs=44.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhh---hh----hc-CeeEEeEecc--CCCHHHHHHHHHc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVN---AC----AK-EIDILSCFRY--VNDYPDALEMVAS   70 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~---~~----~~-~~~l~g~~~~--~~~~~~~~~~~~~   70 (112)
                      +|+|+.|++.......+..+++.| +-+++   .++...+..+   +.    .+ +..+......  ...+..+.+++.+
T Consensus        72 ~D~V~i~tp~~~h~~~~~~al~~G-~~v~~---eKp~~~~~~~~~~l~~~a~~~~~~~~~~~~~~r~~p~~~~~~~~i~~  147 (346)
T 3cea_A           72 IDAIFIVAPTPFHPEMTIYAMNAG-LNVFC---EKPLGLDFNEVDEMAKVIKSHPNQIFQSGFMRRYDDSYRYAKKIVDN  147 (346)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTT-CEEEE---CSCCCSCHHHHHHHHHHHHTCTTSCEECCCGGGTCHHHHHHHHHHHT
T ss_pred             CCEEEEeCChHhHHHHHHHHHHCC-CEEEE---cCCCCCCHHHHHHHHHHHHhCCCCeEEEecccccCHHHHHHHHHHHc
Confidence            589999998887788888888875 44444   2233333322   22    34 5555433332  3568889999999


Q ss_pred             CCC
Q psy12355         71 GKC   73 (112)
Q Consensus        71 g~~   73 (112)
                      |.+
T Consensus       148 g~i  150 (346)
T 3cea_A          148 GDI  150 (346)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            876

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=88.24  E-value=0.13  Score=29.47  Aligned_cols=33  Identities=9%  Similarity=0.061  Sum_probs=23.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP   34 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~   34 (112)
                      +|+|+.|+|.+..+.. .+.+++++.++.+|.+.
T Consensus        81 ~Divi~at~~~~~~~~-~~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           81 NDVIITATSSKTPIVE-ERSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             CSEEEECSCCSSCSBC-GGGCCTTCEEEECCSSC
T ss_pred             CCEEEEeCCCCCcEee-HHHcCCCCEEEEccCCc
Confidence            5888888887643322 36788888888887654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=88.21  E-value=0.69  Score=27.79  Aligned_cols=33  Identities=12%  Similarity=-0.092  Sum_probs=25.1

Q ss_pred             CcEEEEccc---ChHHHHHHHhhccCCcEEEEEecC
Q psy12355          1 MMLYLDPLG---TENCLTLGINVTKMGGKLMLVGMG   33 (112)
Q Consensus         1 ~D~v~d~~g---~~~~~~~~~~~l~~~G~iv~~g~~   33 (112)
                      +|+|+...+   ....+..+.+.|+++|+++.....
T Consensus       109 ~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A          109 PDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             CSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             CCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecc
Confidence            578886543   245688899999999999987643

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=86.48  E-value=0.25  Score=31.15  Aligned_cols=31  Identities=16%  Similarity=0.010  Sum_probs=24.8

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEec
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGM   32 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~   32 (112)
                      +|+|+. ...+..+..+.+.|++||+++....
T Consensus       149 fD~v~~-~~~~~~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          149 MDAIIR-IYAPCKAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             EEEEEE-ESCCCCHHHHHHHEEEEEEEEEEEE
T ss_pred             eeEEEE-eCChhhHHHHHHhcCCCcEEEEEEc
Confidence            477774 4556678999999999999998764

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=85.68  E-value=0.23  Score=30.49  Aligned_cols=32  Identities=9%  Similarity=0.006  Sum_probs=25.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEec
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGM   32 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~   32 (112)
                      ||+|+...+....+..+.+.|+++|+++..-.
T Consensus       163 fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          163 FDAIHVGASASELPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             EEEEEECSBBSSCCHHHHHHEEEEEEEEEEEE
T ss_pred             cCEEEECCchHHHHHHHHHhcCCCcEEEEEEc
Confidence            57787766566667888999999999987743

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=85.30  E-value=0.24  Score=30.02  Aligned_cols=31  Identities=19%  Similarity=0.055  Sum_probs=23.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG   31 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g   31 (112)
                      ||+|+.+.+.......+.+.|+++|+++..-
T Consensus       147 fD~v~~~~~~~~~~~~~~~~L~pgG~lv~~~  177 (215)
T 2yxe_A          147 YDRIYTTAAGPKIPEPLIRQLKDGGKLLMPV  177 (215)
T ss_dssp             EEEEEESSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             eeEEEECCchHHHHHHHHHHcCCCcEEEEEE
Confidence            5788876655555577899999999998774

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=84.34  E-value=0.9  Score=28.45  Aligned_cols=32  Identities=9%  Similarity=0.104  Sum_probs=22.3

Q ss_pred             CcEEEEccc---ChHHHHHHHhhccCCcEEEEEec
Q psy12355          1 MMLYLDPLG---TENCLTLGINVTKMGGKLMLVGM   32 (112)
Q Consensus         1 ~D~v~d~~g---~~~~~~~~~~~l~~~G~iv~~g~   32 (112)
                      ||+|+-...   ....+..+.+.|++||.++.-..
T Consensus       137 fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          137 FDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             eEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            577773221   23468888999999999887643

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=84.32  E-value=0.29  Score=30.11  Aligned_cols=31  Identities=19%  Similarity=0.064  Sum_probs=24.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG   31 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g   31 (112)
                      ||+|+...+.......+.+.|++||+++..-
T Consensus       164 fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~~  194 (227)
T 1r18_A          164 YNAIHVGAAAPDTPTELINQLASGGRLIVPV  194 (227)
T ss_dssp             EEEEEECSCBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             ccEEEECCchHHHHHHHHHHhcCCCEEEEEE
Confidence            5778766655566688999999999988763

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=83.79  E-value=0.31  Score=29.83  Aligned_cols=31  Identities=19%  Similarity=0.038  Sum_probs=23.8

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG   31 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g   31 (112)
                      ||+|+...+....+..+.+.|++||+++..-
T Consensus       152 fD~i~~~~~~~~~~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          152 YDAIHVGAAAPVVPQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             EEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             cCEEEECCchHHHHHHHHHhcCCCcEEEEEE
Confidence            4777765555566788999999999998764

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=83.42  E-value=0.97  Score=30.03  Aligned_cols=34  Identities=9%  Similarity=0.077  Sum_probs=28.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP   34 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~   34 (112)
                      +|+||+|+|.....+.+-+.++.|.+.+.++.+.
T Consensus        92 vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap~  125 (335)
T 1u8f_O           92 AEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPS  125 (335)
T ss_dssp             CCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCC
T ss_pred             CCEEEECCCchhhHHHHHHHHhCCCeEEEeccCC
Confidence            5999999998877888888888877999988764

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=83.14  E-value=1.3  Score=25.32  Aligned_cols=23  Identities=17%  Similarity=0.205  Sum_probs=18.5

Q ss_pred             HHHHHHHhhccCCcEEEEEecCC
Q psy12355         12 NCLTLGINVTKMGGKLMLVGMGP   34 (112)
Q Consensus        12 ~~~~~~~~~l~~~G~iv~~g~~~   34 (112)
                      ..+..+.+.|+++|+++......
T Consensus       117 ~~l~~~~~~L~~gG~l~~~~~~~  139 (180)
T 1ej0_A          117 LALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEESS
T ss_pred             HHHHHHHHHcCCCcEEEEEEecC
Confidence            56788889999999999876443

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=83.09  E-value=0.83  Score=28.36  Aligned_cols=32  Identities=13%  Similarity=-0.242  Sum_probs=24.8

Q ss_pred             CcEEEEcccCh-HHHHHHHhhccCCcEEEEEec
Q psy12355          1 MMLYLDPLGTE-NCLTLGINVTKMGGKLMLVGM   32 (112)
Q Consensus         1 ~D~v~d~~g~~-~~~~~~~~~l~~~G~iv~~g~   32 (112)
                      +|+|+-..+.+ ..+..+.++|+++|+++.+..
T Consensus       167 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  199 (258)
T 2pwy_A          167 YDGVALDLMEPWKVLEKAALALKPDRFLVAYLP  199 (258)
T ss_dssp             EEEEEEESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             cCEEEECCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            47777655554 678889999999999998763

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=82.78  E-value=0.36  Score=29.87  Aligned_cols=31  Identities=23%  Similarity=0.243  Sum_probs=23.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG   31 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g   31 (112)
                      ||+|+.+.+.......+.+.|++||+++..-
T Consensus       159 fD~Ii~~~~~~~~~~~~~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          159 YDVIIVTAGAPKIPEPLIEQLKIGGKLIIPV  189 (235)
T ss_dssp             EEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             ccEEEECCcHHHHHHHHHHhcCCCcEEEEEE
Confidence            4788876655555577899999999988764

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=82.67  E-value=1  Score=30.06  Aligned_cols=34  Identities=15%  Similarity=0.021  Sum_probs=29.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP   34 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~   34 (112)
                      +|+||+|+|...+.+.+-..++.|.+.+.++.+.
T Consensus        92 vDiV~eatg~~~s~e~a~~~l~~Gak~V~iSap~  125 (337)
T 1rm4_O           92 IDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPG  125 (337)
T ss_dssp             CCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCC
T ss_pred             CCEEEECCCchhhHHHHHHHHHcCCEEEEECCcc
Confidence            5999999998777788888899899999998654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=82.62  E-value=0.33  Score=29.33  Aligned_cols=31  Identities=16%  Similarity=0.049  Sum_probs=23.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG   31 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g   31 (112)
                      ||+|+...+.......+.+.|++||+++..-
T Consensus       144 ~D~i~~~~~~~~~~~~~~~~L~pgG~lv~~~  174 (210)
T 3lbf_A          144 FDAIIVTAAPPEIPTALMTQLDEGGILVLPV  174 (210)
T ss_dssp             EEEEEESSBCSSCCTHHHHTEEEEEEEEEEE
T ss_pred             ccEEEEccchhhhhHHHHHhcccCcEEEEEE
Confidence            5778876555554567889999999988763

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=82.58  E-value=0.86  Score=31.50  Aligned_cols=53  Identities=8%  Similarity=0.080  Sum_probs=37.6

Q ss_pred             CcEEEEcccChHHHH-HHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEe
Q psy12355          1 MMLYLDPLGTENCLT-LGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCF   55 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~-~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~   55 (112)
                      +|+++.+++....+. ..++.+++++.++.+|-  .+.+++...+..+..+..++.
T Consensus       267 ADVVilt~gt~~iI~~e~l~~MK~gAIVINvgR--g~vEID~~~L~~~~~~~~~ir  320 (436)
T 3h9u_A          267 AHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGH--FDTEIQVAWLKANAKERVEVK  320 (436)
T ss_dssp             CSEEEECSSCSCSBCTTTGGGCCTTEEEEECSS--SGGGBCHHHHHHHCSEEEEEE
T ss_pred             CCEEEECCCCcCccCHHHHhhcCCCcEEEEeCC--CCCccCHHHHHhhcCceEeec
Confidence            589998887765444 57889999999999973  345677776666555555443

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=81.54  E-value=0.85  Score=28.04  Aligned_cols=30  Identities=7%  Similarity=0.101  Sum_probs=22.4

Q ss_pred             CcEEEEcccC---hHHHHHHHhhccCCcEEEEE
Q psy12355          1 MMLYLDPLGT---ENCLTLGINVTKMGGKLMLV   30 (112)
Q Consensus         1 ~D~v~d~~g~---~~~~~~~~~~l~~~G~iv~~   30 (112)
                      ||+|+...+.   ...+..+.+.|++||+++..
T Consensus       127 fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          127 FDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             EEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            4777754433   35678899999999999886

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=81.26  E-value=1.1  Score=28.37  Aligned_cols=32  Identities=16%  Similarity=0.037  Sum_probs=24.8

Q ss_pred             CcEEEEcccCh-HHHHHHHhhccCCcEEEEEec
Q psy12355          1 MMLYLDPLGTE-NCLTLGINVTKMGGKLMLVGM   32 (112)
Q Consensus         1 ~D~v~d~~g~~-~~~~~~~~~l~~~G~iv~~g~   32 (112)
                      +|+|+-..+.+ ..+..+.+.|+++|+++.+..
T Consensus       172 ~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  204 (280)
T 1i9g_A          172 VDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVA  204 (280)
T ss_dssp             EEEEEEESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             eeEEEECCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            47777655554 678889999999999998764

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=80.93  E-value=1.3  Score=25.90  Aligned_cols=20  Identities=25%  Similarity=0.285  Sum_probs=17.3

Q ss_pred             hHHHHHHHhhccCCcEEEEE
Q psy12355         11 ENCLTLGINVTKMGGKLMLV   30 (112)
Q Consensus        11 ~~~~~~~~~~l~~~G~iv~~   30 (112)
                      ...+..+.++|+|||+++..
T Consensus        81 ~~~l~~~~r~LkpgG~l~~~  100 (176)
T 2ld4_A           81 AEILAEIARILRPGGCLFLK  100 (176)
T ss_dssp             HHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHCCCCEEEEEE
Confidence            45788899999999999984

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=80.88  E-value=1.3  Score=27.51  Aligned_cols=31  Identities=13%  Similarity=0.066  Sum_probs=24.3

Q ss_pred             CcEEEEcccCh-HHHHHHHhhccCCcEEEEEe
Q psy12355          1 MMLYLDPLGTE-NCLTLGINVTKMGGKLMLVG   31 (112)
Q Consensus         1 ~D~v~d~~g~~-~~~~~~~~~l~~~G~iv~~g   31 (112)
                      +|+|+-..+.+ ..+..+.++|+++|+++.+.
T Consensus       163 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          163 VDHVILDLPQPERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             EEEEEECSSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             cCEEEECCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            47777655554 37899999999999999875

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=80.85  E-value=1  Score=27.82  Aligned_cols=31  Identities=26%  Similarity=0.326  Sum_probs=22.7

Q ss_pred             CcEEEEcccCh---HHHHHHHhhccCCcEEEEEe
Q psy12355          1 MMLYLDPLGTE---NCLTLGINVTKMGGKLMLVG   31 (112)
Q Consensus         1 ~D~v~d~~g~~---~~~~~~~~~l~~~G~iv~~g   31 (112)
                      ||+|+...+..   ..+..+.+.|++||+++..-
T Consensus       148 fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          148 IDLFFLDADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             EEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            47777654333   45788899999999999753

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=80.69  E-value=1.5  Score=30.07  Aligned_cols=71  Identities=7%  Similarity=-0.052  Sum_probs=44.4

Q ss_pred             CcEEEEcccChH------HHHHHHhhccCCcEEEEEecCC-Ccccc--ChhhhhhcCeeEEeEeccC-CCHHHHHHHHHc
Q psy12355          1 MMLYLDPLGTEN------CLTLGINVTKMGGKLMLVGMGP-QMVSV--PLVNACAKEIDILSCFRYV-NDYPDALEMVAS   70 (112)
Q Consensus         1 ~D~v~d~~g~~~------~~~~~~~~l~~~G~iv~~g~~~-~~~~~--~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~   70 (112)
                      +|++|.|+..+.      .-...++.+++|+.++.++... +..+.  +...+..+++++.+....+ ...++...++.+
T Consensus       276 aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t~~~~~~~~~GV~~~gv~nlP~~vp~tAS~~ls~  355 (405)
T 4dio_A          276 QDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGAEAGKVTEVGGVRIVGHLNVAGRIAASASLLYAK  355 (405)
T ss_dssp             CSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTCCTTEEEEETTEEEEECSSGGGGGHHHHHHHHHH
T ss_pred             CCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccccCCCCeEEECCEEEEEeCCCCccCHHHHHHHHHH
Confidence            599999864331      2467899999999999998533 33322  1122345678888877654 445555555544


Q ss_pred             C
Q psy12355         71 G   71 (112)
Q Consensus        71 g   71 (112)
                      .
T Consensus       356 ~  356 (405)
T 4dio_A          356 N  356 (405)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=80.69  E-value=1.1  Score=28.34  Aligned_cols=32  Identities=16%  Similarity=0.095  Sum_probs=24.9

Q ss_pred             CcEEEEcccCh-HHHHHHHhhccCCcEEEEEec
Q psy12355          1 MMLYLDPLGTE-NCLTLGINVTKMGGKLMLVGM   32 (112)
Q Consensus         1 ~D~v~d~~g~~-~~~~~~~~~l~~~G~iv~~g~   32 (112)
                      +|+|+-..+.+ ..+..+.++|+++|+++....
T Consensus       182 ~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          182 VDALFLDVPDPWNYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             EEEEEECCSCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             cCEEEECCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            47777655555 678889999999999998753

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=80.49  E-value=1.1  Score=29.71  Aligned_cols=34  Identities=9%  Similarity=-0.042  Sum_probs=28.8

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP   34 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~   34 (112)
                      +|+||+|+|...+.+.+-..++.|.+.+.++.+.
T Consensus        89 vDvVf~atg~~~s~e~a~~~l~~GakvVdlSa~~  122 (330)
T 1gad_O           89 VDVVAEATGLFLTDETARKHITAGAKKVVMTGPS  122 (330)
T ss_dssp             CSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred             CCEEEECCCccccHHHHHHHHHCCCEEEEECCCC
Confidence            5999999998777788888888898989888654

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=80.48  E-value=1.6  Score=26.94  Aligned_cols=29  Identities=14%  Similarity=-0.033  Sum_probs=20.5

Q ss_pred             CcEEE-EcccChHHHHHHHhhccCCcEEEE
Q psy12355          1 MMLYL-DPLGTENCLTLGINVTKMGGKLML   29 (112)
Q Consensus         1 ~D~v~-d~~g~~~~~~~~~~~l~~~G~iv~   29 (112)
                      ||+|| |+--....+..+++.+++||.|+.
T Consensus       123 fDlIfIDg~k~~~~~~~~l~~l~~GG~Iv~  152 (202)
T 3cvo_A          123 PDVVLVDGRFRVGCALATAFSITRPVTLLF  152 (202)
T ss_dssp             CSEEEECSSSHHHHHHHHHHHCSSCEEEEE
T ss_pred             CCEEEEeCCCchhHHHHHHHhcCCCeEEEE
Confidence            57777 442124667778999999999844

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=80.09  E-value=1.4  Score=27.09  Aligned_cols=30  Identities=13%  Similarity=0.096  Sum_probs=22.4

Q ss_pred             CcEEEEcccCh----HHHHHHHhhccCCcEEEEE
Q psy12355          1 MMLYLDPLGTE----NCLTLGINVTKMGGKLMLV   30 (112)
Q Consensus         1 ~D~v~d~~g~~----~~~~~~~~~l~~~G~iv~~   30 (112)
                      +|+|+.....+    ..+..+.+.|+++|+++..
T Consensus       144 ~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          144 VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            47777554444    3478888899999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	112
d1e3ja2	170	c.2.1.1 (A:143-312) Ketose reductase (sorbitol deh	7e-13
d1pl8a2	171	c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh	4e-11
d1h2ba2	172	c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo	2e-04
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	5e-04
d1llua2	166	c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudom	0.003

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 59.2 bits (142), Expect = 7e-13
 Identities = 49/69 (71%), Positives = 57/69 (82%)

Query: 4   YLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPD 63
            +D  G E C+T+GIN+T+ GG LMLVGMG QMV+VPLVNACA+EIDI S FRY NDYP 
Sbjct: 102 TIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDYPI 161

Query: 64  ALEMVASGK 72
           ALEMVASG+
Sbjct: 162 ALEMVASGR 170

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (130), Expect = 4e-11
 Identities = 29/69 (42%), Positives = 44/69 (63%)

Query: 4   YLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPD 63
            ++  G E  +  GI  T+ GG L+LVG+G +M +VPL++A  +E+DI   FRY N +P 
Sbjct: 101 TIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPV 160

Query: 64  ALEMVASGK 72
           A+ M+AS  
Sbjct: 161 AISMLASKS 169

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 36.1 bits (82), Expect = 2e-04
 Identities = 10/70 (14%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 4   YLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY-VNDYP 62
            +D +G++  +     +    G+L++VG     +  P +   + E+           +  
Sbjct: 104 AMDFVGSQATVDYTPYLLGRMGRLIIVGY-GGELRFPTIRVISSEVSFEGSLVGNYVELH 162

Query: 63  DALEMVASGK 72
           + + +   GK
Sbjct: 163 ELVTLALQGK 172

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.3 bits (80), Expect = 5e-04
 Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 4/70 (5%)

Query: 4   YLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNA---CAKEIDILSCFRY-VN 59
            L+  G    L  G  + + GG   + G+      VP         K       +    +
Sbjct: 104 ILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTS 163

Query: 60  DYPDALEMVA 69
            +   + + +
Sbjct: 164 HFVKTVSITS 173

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 33.1 bits (74), Expect = 0.003
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 18  INVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDIL-SCFRYVNDYPDALEMVASG 71
           I + + GG + LVG+ P     P+ +   K + I  S      D  +AL+    G
Sbjct: 111 IGMARRGGTIALVGLPPGDFPTPIFDVVLKGLHIAGSIVGTRADLQEALDFAGEG 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.69
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.66
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.56
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.51
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.46
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.38
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.38
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.38
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.37
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.35
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.34
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.16
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.16
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.14
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.13
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.07
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.0
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.0
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	98.99
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	98.95
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	98.95
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	98.92
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	98.9
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	98.85
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	98.77
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	98.71
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	98.48
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	98.01
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.01
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.05
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.89
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.29
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.28
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.87
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.59
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.54
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	91.21
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.93
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.83
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.43
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	90.28
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	88.81
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.76
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.22
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	86.91
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	86.56
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	86.3
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	86.22
d2f1fa2	86	Acetolactate synthase small subunit, IlvH {Escheri	82.83
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	82.13

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.4e-17  Score=96.94  Aligned_cols=74  Identities=39%  Similarity=0.698  Sum_probs=69.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCP   74 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~   74 (112)
                      +|++|||+|++.++++++++++++|+++.+|.+.++.++|+..++.|++++.|++.+.++|+++++++++|+++
T Consensus        98 ~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~~~~~~~~~~~~~k~l~i~Gs~~~~~~~~~al~li~~gkid  171 (171)
T d1pl8a2          98 PEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVN  171 (171)
T ss_dssp             CSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHHHHHTTCEEEECCSCSSCHHHHHHHHHTTSCC
T ss_pred             ceEEEeccCCchhHHHHHHHhcCCCEEEEEecCCCCCccCHHHHHHCCcEEEEEeCCHhHHHHHHHHHHcCCCC
Confidence            69999999999999999999999999999999888888999999999999999998889999999999999875

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.66  E-value=2.8e-16  Score=93.90  Aligned_cols=72  Identities=68%  Similarity=1.102  Sum_probs=67.8

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGK   72 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~   72 (112)
                      +|++|||+|++.++++++++++++|+++.+|.+.++.++++..++.|++++.|++.+.++|+++++++++|+
T Consensus        99 ~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~gs~~~~~~~~~ai~li~~Gk  170 (170)
T d1e3ja2          99 PNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDYPIALEMVASGR  170 (170)
T ss_dssp             CSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCHHHHHTTTCEEEECCSCSSCHHHHHHHHHTTS
T ss_pred             CceeeecCCChHHHHHHHHHHhcCCceEEEecCCCCCCcCHHHHHHCCCEEEEEECCHHHHHHHHHHHHcCC
Confidence            599999999999999999999999999999988877889999999999999999988899999999999985

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.56  E-value=1e-15  Score=91.50  Aligned_cols=72  Identities=17%  Similarity=0.188  Sum_probs=67.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGK   72 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~   72 (112)
                      +|+++||+|++.++++++++++++|+++.+|.+.++.+++...++.|++++.|++.+. ++++++++++++|+
T Consensus        98 ~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~Gs~~~~~~d~~~~l~lv~~GK  170 (170)
T d1jvba2          98 VDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGK  170 (170)
T ss_dssp             EEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCCCCCHHHHHHHTCEEEECCSCCHHHHHHHHHHHHTTS
T ss_pred             chhhhcccccchHHHhhhhhcccCCEEEEeccccCccccCHHHHHhCCcEEEEEecCCHHHHHHHHHHHHcCC
Confidence            5899999999999999999999999999999988788999999999999999999866 88999999999985

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.51  E-value=8.6e-15  Score=87.60  Aligned_cols=71  Identities=15%  Similarity=0.290  Sum_probs=64.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGK   72 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~   72 (112)
                      +|++|||+|++.++++++++++++|+++.+|.+. +.++++..++.|++++.|++.+. ++++++++++++|+
T Consensus       101 ~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~-~~~~~~~~l~~k~~~i~Gs~~~~~~d~~~~l~l~~~GK  172 (172)
T d1h2ba2         101 VNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGG-ELRFPTIRVISSEVSFEGSLVGNYVELHELVTLALQGK  172 (172)
T ss_dssp             EEEEEESSCCHHHHHHGGGGEEEEEEEEECCCSS-CCCCCHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTS
T ss_pred             ceEEEEecCcchHHHHHHHHHhCCCEEEEEeCcc-cccCCHHHHHhCCcEEEEEEecCHHHHHHHHHHHHcCC
Confidence            5899999999989999999999999999999744 57788889999999999999766 88999999999985

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.46  E-value=4.5e-14  Score=84.60  Aligned_cols=72  Identities=18%  Similarity=0.268  Sum_probs=63.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEeccC----CCHHHHHHHHHcCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRYV----NDYPDALEMVASGK   72 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~~----~~~~~~~~~~~~g~   72 (112)
                      +|++|||+|++.+++.++++++++|+++.+|.+..  +.++++..++.+++++.|++...    ++++++++++++|+
T Consensus        97 ~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g~~~~~~~~~~~~~l~~~Gk  174 (174)
T d1f8fa2          97 VNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGK  174 (174)
T ss_dssp             EEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGGSCHHHHHHHHHHHHHTTS
T ss_pred             CcEEEEcCCcHHHHHHHHhcccCceEEEEEeecCCCcccccCHHHHHHCCCEEEEEEecCCChHHHHHHHHHHHHcCC
Confidence            58999999999999999999999999999997653  56789999999999999987432    67899999999985

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=7.6e-14  Score=83.12  Aligned_cols=73  Identities=18%  Similarity=0.141  Sum_probs=61.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKC   73 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~   73 (112)
                      +|+++||+|++.++.+++++++++|+++.+|.+.+ ...++...++.|++++.|++.++ .++++++++++++++
T Consensus        94 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs~~~~~~d~~e~l~l~a~~~I  168 (168)
T d1uufa2          94 FDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGI  168 (168)
T ss_dssp             EEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCSCCHHHHHHHHHHHHHHTC
T ss_pred             CceeeeeeecchhHHHHHHHHhcCCEEEEeccCCCCcccccHHHHHHCCcEEEEEeecCHHHHHHHHHHHHHcCC
Confidence            58999999998889999999999999999998665 45678888999999999998766 889999999998764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=5.7e-14  Score=83.68  Aligned_cols=74  Identities=14%  Similarity=0.118  Sum_probs=64.9

Q ss_pred             CcEEEEcccChH--HHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCC
Q psy12355          1 MMLYLDPLGTEN--CLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCP   74 (112)
Q Consensus         1 ~D~v~d~~g~~~--~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~   74 (112)
                      +|+++||+|+..  ++.+++++++++|+++.+|.+.++.+++...++.|++++.|+...+ ++++++++++++|+++
T Consensus        92 ~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~~g~~~~~~e~l~li~~gkIk  168 (168)
T d1piwa2          92 FDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYSALGSIKELNQLLKLVSEKDIK  168 (168)
T ss_dssp             EEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCSSCCEEECGGGCBSCEEEECCCCCHHHHHHHHHHHHHTTCC
T ss_pred             cceEEEEecCCccchHHHHHHHhhccceEEEeccccccccccHHHHHhCCcEEEEEeeCCHHHHHHHHHHHHhCCCC
Confidence            489999987654  5788999999999999999888777888888999999999998755 8999999999999874

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.38  E-value=2.3e-13  Score=80.74  Aligned_cols=70  Identities=21%  Similarity=0.365  Sum_probs=64.1

Q ss_pred             cEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcC
Q psy12355          2 MLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASG   71 (112)
Q Consensus         2 D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g   71 (112)
                      |.++++++++.++++++++++++|+++.+|.+.++.++++..++.|++++.|++.+. ++++++++++++|
T Consensus        95 ~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~~~~~~d~~e~l~l~~~G  165 (166)
T d1llua2          95 HGVLVTAVSNSAFGQAIGMARRGGTIALVGLPPGDFPTPIFDVVLKGLHIAGSIVGTRADLQEALDFAGEG  165 (166)
T ss_dssp             EEEEECCSCHHHHHHHHTTEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTT
T ss_pred             cccccccccchHHHHHHHHhcCCcEEEEEEecCCCccCCHHHHHhCCcEEEEEeecCHHHHHHHHHHHHCc
Confidence            567888889999999999999999999999888888899999999999999998766 7899999999987

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=2.8e-13  Score=81.50  Aligned_cols=71  Identities=13%  Similarity=0.192  Sum_probs=61.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChh-hhhhcCeeEEeEeccC-CCHHHHHHHHHcC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLV-NACAKEIDILSCFRYV-NDYPDALEMVASG   71 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~-~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g   71 (112)
                      +|+||||+|++.++++++++++++|+++.+|.+.+  +++++.. .++.|++++.|++.+. .+++++++++.++
T Consensus       101 ~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~~~~~~~~~~~~~i~~~  175 (182)
T d1vj0a2         101 ADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFVKTVSITSRN  175 (182)
T ss_dssp             EEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCCCHHHHHHHHHHHHTC
T ss_pred             ceEEeecCCchhHHHHHHHHhcCCCEEEEEeecCCCCccccccHHHHHHCCcEEEEEEeCCHHHHHHHHHHHHHC
Confidence            58999999999999999999999999999997653  5666654 4788999999999876 8899999999986

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.35  E-value=9.8e-13  Score=78.75  Aligned_cols=71  Identities=24%  Similarity=0.325  Sum_probs=60.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCCccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGK   72 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~   72 (112)
                      +|++|||+|++.++++++++++++ |+++.+|.+.++.++++..+++ +.+|.|++..    ..+++++++++.+|+
T Consensus        99 ~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~~~~~i~~~~~~~-~k~i~Gs~~Gs~~~~~d~p~li~l~~~GK  174 (174)
T d1e3ia2          99 VDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVIL-GRSINGTFFGGWKSVDSVPNLVSDYKNKK  174 (174)
T ss_dssp             BSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEEHHHHHT-TCEEEECSGGGCCHHHHHHHHHHHHHTTS
T ss_pred             CcEEEEecccchHHHHHHHHhhcCCeEEEecCCCCCccccchHHHhc-cCEEEEEEeeCCChHHHHHHHHHHHHCcC
Confidence            599999999999999999999996 9999999988888888776654 5688888742    268899999999885

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.34  E-value=8.4e-13  Score=78.23  Aligned_cols=73  Identities=22%  Similarity=0.385  Sum_probs=65.5

Q ss_pred             cEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCC
Q psy12355          2 MLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCP   74 (112)
Q Consensus         2 D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~   74 (112)
                      |.++++++++.++.+++++++++|+++.+|.+.++.+++...++.+++++.|++.+. ++++++++++++|+++
T Consensus        95 ~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~gs~~~~~~~~~~~l~l~~~Gkik  168 (168)
T d1rjwa2          95 HAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSIVGTRKDLQEALQFAAEGKVK  168 (168)
T ss_dssp             EEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSCC
T ss_pred             ceEEeecCCHHHHHHHHHHhccCCceEecccccCCCCCCHHHHHHCCcEEEEEeeCCHHHHHHHHHHHHhCCCC
Confidence            456677888899999999999999999999988888899999999999999998765 8899999999999874

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.16  E-value=1.3e-11  Score=74.50  Aligned_cols=71  Identities=17%  Similarity=0.101  Sum_probs=58.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC-CccccChhhhhhcCeeEEeEeccC----------CCHHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP-QMVSVPLVNACAKEIDILSCFRYV----------NDYPDALEMVA   69 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~-~~~~~~~~~~~~~~~~l~g~~~~~----------~~~~~~~~~~~   69 (112)
                      +|++|||+|. +.+..++++|+++|+++.+|... .+.+++...+++|++++.|++...          +.+.+++++++
T Consensus       108 vdvv~D~vg~-~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~l~~k~~~i~G~~~~~~~~~~~~~~~~~~~~l~~l~~  186 (189)
T d1gu7a2         108 AKLALNCVGG-KSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYE  186 (189)
T ss_dssp             EEEEEESSCH-HHHHHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEEECCHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ceEEEECCCc-chhhhhhhhhcCCcEEEEECCccCCCccCcHHHHHHCCcEEEEEEehHhhhhCHHHHHHHHHHHHHHHH
Confidence            4899999985 45799999999999999999654 467889999999999999986421          45778888888


Q ss_pred             cCC
Q psy12355         70 SGK   72 (112)
Q Consensus        70 ~g~   72 (112)
                      +|+
T Consensus       187 ~Gk  189 (189)
T d1gu7a2         187 EGK  189 (189)
T ss_dssp             HTC
T ss_pred             cCC
Confidence            874

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.16  E-value=5.2e-11  Score=71.05  Aligned_cols=71  Identities=8%  Similarity=0.121  Sum_probs=57.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCCc--cccChhhhhhcCeeEEeEec--cC-CCHHHHHHHHHcCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQM--VSVPLVNACAKEIDILSCFR--YV-NDYPDALEMVASGK   72 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~--~~~~~~~~~~~~~~l~g~~~--~~-~~~~~~~~~~~~g~   72 (112)
                      +|++|||+|++.++.+++..++++ |+++.+|.+...  ++++...+ .+++++.|++.  +. ++++++++++.+|+
T Consensus        98 ~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~-~~~~~i~Gs~~G~~~~~d~~~lidl~~~gK  174 (174)
T d1p0fa2          98 VDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLL-LTGRSLKGSVFGGFKGEEVSRLVDDYMKKK  174 (174)
T ss_dssp             BSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHH-HTTCEEEECSGGGCCGGGHHHHHHHHHTTS
T ss_pred             CcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHHH-hCCCEEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence            589999999999999999998775 999999987654  44444444 56889999873  22 68999999999985

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.14  E-value=3.1e-11  Score=72.23  Aligned_cols=73  Identities=16%  Similarity=0.197  Sum_probs=58.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC---CCHHHHHHHHHcCCCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV---NDYPDALEMVASGKCPV   75 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~---~~~~~~~~~~~~g~~~~   75 (112)
                      +|+|+|++|.. .+.+++++|+++||++.+|...+ ..++++..++.|++++.|.....   +...++++.++ |+++|
T Consensus        99 vD~vid~vgg~-~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv~~~~~~~~~~~~~~~~la-g~lkP  175 (176)
T d1xa0a2          99 WAAAVDPVGGR-TLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDSVYCPMDLRLRIWERLA-GDLKP  175 (176)
T ss_dssp             EEEEEECSTTT-THHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECCSSSCCHHHHHHHHHHHH-TTTCC
T ss_pred             cCEEEEcCCch-hHHHHHHHhCCCceEEEeecccCcccCCCHHHHHHCCcEEEEEeCCcCCHHHHHHHHHHHh-cccCC
Confidence            58999999875 59999999999999999997654 67889999999999999964332   45556666664 66665

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.13  E-value=2.8e-11  Score=72.27  Aligned_cols=72  Identities=14%  Similarity=0.084  Sum_probs=55.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCc--cccChh--hhhhcCeeEEeEeccC--CCHHHHHHHHHcCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQM--VSVPLV--NACAKEIDILSCFRYV--NDYPDALEMVASGK   72 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~--~~~~~~--~~~~~~~~l~g~~~~~--~~~~~~~~~~~~g~   72 (112)
                      +|++|||+|++.++++++++++++|+++.+|.+...  .+++..  ....+++++.++....  ..++++.+++..|+
T Consensus        97 ~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~r~~~e~l~~li~~gk  174 (174)
T d1jqba2          97 VDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLRAERLRDMVVYNR  174 (174)
T ss_dssp             EEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEBCCCCHHHHHHHHHHHHHTTS
T ss_pred             cceEEEccCCHHHHHHHHHHHhcCCEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEecCCCCcccHHHHHHHHHcCC
Confidence            589999999999999999999999999999987643  333322  2455788999887543  44667888988874

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=4.8e-11  Score=71.06  Aligned_cols=69  Identities=16%  Similarity=0.350  Sum_probs=58.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC---CCHHHHHHHHHcC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV---NDYPDALEMVASG   71 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~---~~~~~~~~~~~~g   71 (112)
                      +|+++||+|. ..++.++++++++|+++.+|... +.++++..++.|++++.|++.+.   ++++++++++.++
T Consensus        98 ~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~G~~~-~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~l~~g  169 (174)
T d1yb5a2          98 IDIIIEMLAN-VNLSKDLSLLSHGGRVIVVGSRG-TIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAG  169 (174)
T ss_dssp             EEEEEESCHH-HHHHHHHHHEEEEEEEEECCCCS-CEEECTHHHHTTTCEEEECCGGGCCHHHHHHHHHHHHHH
T ss_pred             ceEEeecccH-HHHHHHHhccCCCCEEEEEecCC-CCCCCHHHHHHCCCEEEEEEecCCCHHHHHHHHHHHHHH
Confidence            5899999985 67999999999999999999643 57788888999999999997543   5688888887765

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.00  E-value=1.5e-10  Score=69.21  Aligned_cols=76  Identities=20%  Similarity=0.183  Sum_probs=57.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEecc----------CCCHHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRY----------VNDYPDALEMVA   69 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~----------~~~~~~~~~~~~   69 (112)
                      +|+++||+|+ ++++.++++++++|+++.+|.... +........+.+++++.++...          .+.+++++++++
T Consensus        95 ~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~  173 (183)
T d1pqwa_          95 VDVVLNSLAG-EAIQRGVQILAPGGRFIELGKKDVYADASLGLAALAKSASFSVVDLDLNLKLQPARYRQLLQHILQHVA  173 (183)
T ss_dssp             EEEEEECCCT-HHHHHHHHTEEEEEEEEECSCGGGTTTCEEEGGGGTTTCEEEECCHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecccc-hHHHHHHHHhcCCCEEEEEccCCCCCCcccchHHHhCCcEEEEEEccceeccCHHHHHHHHHHHHHHHH
Confidence            5899999987 668999999999999999986543 2222223345688888887521          145888999999


Q ss_pred             cCCCCCcc
Q psy12355         70 SGKCPVRK   77 (112)
Q Consensus        70 ~g~~~~~~   77 (112)
                      +|+++|-|
T Consensus       174 ~G~i~p~P  181 (183)
T d1pqwa_         174 DGKLEVLP  181 (183)
T ss_dssp             TTSSCCCC
T ss_pred             CCCCceeC
Confidence            99998754

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.00  E-value=2.9e-10  Score=68.10  Aligned_cols=70  Identities=20%  Similarity=0.208  Sum_probs=55.2

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC-------CccccChhhhhhcCeeEEeEeccC-------CCHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP-------QMVSVPLVNACAKEIDILSCFRYV-------NDYPDALE   66 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~-------~~~~~~~~~~~~~~~~l~g~~~~~-------~~~~~~~~   66 (112)
                      +|+||||+|. +++.+++++++++|+++.+|...       .+..+++..+++|++++.|++...       +.++++.+
T Consensus        99 vd~v~D~vG~-~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~~~~~~~~~~~~~~l~~  177 (182)
T d1v3va2          99 YDCYFDNVGG-EFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMK  177 (182)
T ss_dssp             EEEEEESSCH-HHHHHHGGGEEEEEEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGGGCCHHHHHHHHHHHHH
T ss_pred             CceeEEecCc-hhhhhhhhhccCCCeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEeccChHHHHHHHHHHHH
Confidence            5899999984 67999999999999999998422       133456678999999999987543       34677888


Q ss_pred             HHHcC
Q psy12355         67 MVASG   71 (112)
Q Consensus        67 ~~~~g   71 (112)
                      ++.+|
T Consensus       178 ~i~~G  182 (182)
T d1v3va2         178 WVLEG  182 (182)
T ss_dssp             HHHTT
T ss_pred             HHhCc
Confidence            88776

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=98.99  E-value=5.7e-10  Score=66.22  Aligned_cols=72  Identities=10%  Similarity=0.004  Sum_probs=57.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEE-EecCCCccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLML-VGMGPQMVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGK   72 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~-~g~~~~~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~   72 (112)
                      +|+++|++|++.++.+++.+++++|.++. +|.+.....++...++.+++++.|++..    .++++++++++++|+
T Consensus        99 ~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~~~~d~~~~i~l~~~gK  175 (175)
T d1cdoa2          99 VDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDKK  175 (175)
T ss_dssp             BSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTCEEEECSGGGCCHHHHHHHHHHHHHTTS
T ss_pred             cceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCCcccCccHHHHHCCcEEEEEEEeCCcHHHHHHHHHHHHHcCC
Confidence            58999999999999999999888755554 5555555556666777789999998743    268999999999985

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=98.95  E-value=1.1e-09  Score=65.01  Aligned_cols=72  Identities=8%  Similarity=-0.070  Sum_probs=56.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEeccC----CCHHHHHHHHHcCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRYV----NDYPDALEMVASGK   72 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~~----~~~~~~~~~~~~g~   72 (112)
                      +|++||++|.+.++.+++.+++++|+++.++....  ....+....+.+++++.|++...    +++.++++++.+|+
T Consensus        99 ~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~~~~d~~~li~l~~~GK  176 (176)
T d2fzwa2          99 VDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKK  176 (176)
T ss_dssp             BSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCCHHHHHHHHHHHHHTTS
T ss_pred             CcEeeecCCCHHHHHHHHHhhcCCceeEEEEeeccccccccccHHHHHCCCEEEEEeeeCCcHHHHHHHHHHHHHcCC
Confidence            59999999999999999999999999988865442  33334444556889999987532    67889999999885

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=98.95  E-value=1.1e-09  Score=64.90  Aligned_cols=68  Identities=15%  Similarity=0.180  Sum_probs=54.8

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC---CCHHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV---NDYPDALEMVA   69 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~---~~~~~~~~~~~   69 (112)
                      +|+++|++|. .++..++++++++|+++.+|...+ +.+++...++.|++++.|+....   +...++++.+.
T Consensus        91 vd~vid~vgg-~~~~~~~~~l~~~G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G~~~~~~~~~~~~~~~~~l~  162 (167)
T d1tt7a2          91 WQGAVDPVGG-KQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMS  162 (167)
T ss_dssp             EEEEEESCCT-HHHHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEECCSSSCCHHHHHHHHHHTT
T ss_pred             ceEEEecCcH-HHHHHHHHHhccCceEEEeeccCCCcccCCHHHHHHCCcEEEEEecCCCCHHHHHHHHHHHH
Confidence            5899999986 558999999999999999997665 78889999999999999976433   34445555543

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.92  E-value=3.3e-10  Score=67.30  Aligned_cols=55  Identities=16%  Similarity=0.378  Sum_probs=43.7

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEecc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRY   57 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~   57 (112)
                      +|++|||+|.  ++.+++++++++|+++.+|...+ ..++++..++.|++++.|++..
T Consensus        92 ~D~v~d~~G~--~~~~~~~~l~~~G~~v~~G~~~g~~~~~~~~~~~~k~~~i~g~~~~  147 (171)
T d1iz0a2          92 LDLVLEVRGK--EVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLT  147 (171)
T ss_dssp             EEEEEECSCT--THHHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECCHH
T ss_pred             ccccccccch--hHHHHHHHHhcCCcEEEEeCCCCCCCCccHHHHHHCCcEEEEEeCc
Confidence            5899999873  48999999999999999998664 5678888999999999999754

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=98.90  E-value=2e-09  Score=63.97  Aligned_cols=72  Identities=6%  Similarity=-0.013  Sum_probs=55.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEe-cCCC-ccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG-MGPQ-MVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGK   72 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g-~~~~-~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~   72 (112)
                      +|++|||+|.+.++.+++..++++|+.+.++ .+.. ........++.+++++.|++..    .++++++++++.+|+
T Consensus        99 ~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~~~~~~~~li~~~~~GK  176 (176)
T d2jhfa2          99 VDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKK  176 (176)
T ss_dssp             BSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCCHHHHHHHHHHHHHTTS
T ss_pred             CCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCCcccccccHHHHhCCCEEEEEEEeCCCHHHHHHHHHHHHHCcC
Confidence            5999999999999999999999986555554 4444 3333445677799999998742    268899999999885

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.85  E-value=1.7e-09  Score=65.46  Aligned_cols=72  Identities=17%  Similarity=0.135  Sum_probs=54.7

Q ss_pred             CcEEEEcccC---------------hHHHHHHHhhccCCcEEEEEecCCCcc-------------ccChhhhhhcCeeEE
Q psy12355          1 MMLYLDPLGT---------------ENCLTLGINVTKMGGKLMLVGMGPQMV-------------SVPLVNACAKEIDIL   52 (112)
Q Consensus         1 ~D~v~d~~g~---------------~~~~~~~~~~l~~~G~iv~~g~~~~~~-------------~~~~~~~~~~~~~l~   52 (112)
                      +|++|||+|.               +.++++++++++++|+++.+|.+....             .+++..++.|++++.
T Consensus        95 ~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~  174 (195)
T d1kola2          95 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFH  174 (195)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCCCCCHHHHHHTTCEEE
T ss_pred             cEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCCcccchhhhhhcCceeeeHHHHHhhcceec
Confidence            5899999983               468999999999999999999765321             234445677888887


Q ss_pred             eEeccC-CCHHHHHHHHHcCC
Q psy12355         53 SCFRYV-NDYPDALEMVASGK   72 (112)
Q Consensus        53 g~~~~~-~~~~~~~~~~~~g~   72 (112)
                      +..... +.++++++++.+++
T Consensus       175 ~g~~~v~~~~~~Ll~~I~~~k  195 (195)
T d1kola2         175 TGQTPVMKYNRALMQAIMWDR  195 (195)
T ss_dssp             ESSCCHHHHHHHHHHHHHTTS
T ss_pred             cCCCchHHHHHHHHHHHHcCC
Confidence            655433 66889999988764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=98.77  E-value=8.7e-09  Score=61.30  Aligned_cols=69  Identities=13%  Similarity=0.180  Sum_probs=52.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCCc--cccChhhhhhcCeeEEeEeccC----CCHHHHHHHHHc
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQM--VSVPLVNACAKEIDILSCFRYV----NDYPDALEMVAS   70 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~--~~~~~~~~~~~~~~l~g~~~~~----~~~~~~~~~~~~   70 (112)
                      +|+++|++|.+.++..++..++++ |+++.+|.+...  ..+++.. +.++.++.|++...    ++++++++++.+
T Consensus       100 ~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~-~~~~~~i~Gs~~G~~~~~~dip~li~~~~~  175 (176)
T d1d1ta2         100 VGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPML-LFTGRTWKGCVFGGLKSRDDVPKLVTEFLA  175 (176)
T ss_dssp             CCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHH-HHTTCEEEECSGGGCCHHHHHHHHHHHHTT
T ss_pred             ceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHH-HhCCCEEEEEEEeCCCcHHHHHHHHHHHhC
Confidence            699999999999899988888665 999999987653  3444444 44688999988432    678888877654

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=6.9e-09  Score=62.24  Aligned_cols=71  Identities=17%  Similarity=0.144  Sum_probs=48.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC---cccc----C---hhhhhhcCeeEEeEeccC------CCHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ---MVSV----P---LVNACAKEIDILSCFRYV------NDYPDA   64 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~---~~~~----~---~~~~~~~~~~l~g~~~~~------~~~~~~   64 (112)
                      +|++||++|. +.+..++++++++||++.+|....   ..+.    +   ...+..|++++.|+....      +.++++
T Consensus       101 vDvv~D~vGg-~~~~~~~~~l~~~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k~i~~~g~~~~~~~~~~~e~~~~l  179 (187)
T d1vj1a2         101 VDVYFDNVGG-DISNTVISQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFEPGILQL  179 (187)
T ss_dssp             EEEEEESSCH-HHHHHHHTTEEEEEEEEEC------------CCCCCHHHHHHHHHTTCEEEECCGGGCGGGHHHHHHHH
T ss_pred             ceEEEecCCc-hhHHHHhhhccccccEEEeccccccccccccCCchHHHHHHHHHhcceEEEEeEecchHHHHHHHHHHH
Confidence            5999999985 669999999999999999995321   1111    1   123567999999876422      346778


Q ss_pred             HHHHHcCC
Q psy12355         65 LEMVASGK   72 (112)
Q Consensus        65 ~~~~~~g~   72 (112)
                      .+++.+|+
T Consensus       180 ~~~i~~Gk  187 (187)
T d1vj1a2         180 SQWFKEGK  187 (187)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHCcC
Confidence            88888874

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=1.7e-07  Score=55.73  Aligned_cols=54  Identities=11%  Similarity=0.188  Sum_probs=47.0

Q ss_pred             cEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEec
Q psy12355          2 MLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFR   56 (112)
Q Consensus         2 D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~   56 (112)
                      |.++|++|. .++..++++++++||++.+|...+ ..+++...++.|++++.|+..
T Consensus        98 ~~vvD~Vgg-~~~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~k~~~i~G~~~  152 (177)
T d1o89a2          98 AGAIDTVGD-KVLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDS  152 (177)
T ss_dssp             EEEEESSCH-HHHHHHHHTEEEEEEEEECCCTTCSCCCCCSHHHHHHCCEEEECCS
T ss_pred             CeeEEEcch-HHHHHHHHHhccccceEeecccCCccccccHHHHHHCCCeEEEEec
Confidence            789999975 568999999999999999997654 677888889999999999753

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=3e-06  Score=49.80  Aligned_cols=70  Identities=14%  Similarity=0.185  Sum_probs=46.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcC-eeEEeEe-----ccC----CCHHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKE-IDILSCF-----RYV----NDYPDALEMVA   69 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~-~~l~g~~-----~~~----~~~~~~~~~~~   69 (112)
                      +|+++|++|. +++..++.+++++|+++.+|.... ..+++...+..+. +.+....     ...    +.+.+++++++
T Consensus        98 ~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~lv~  176 (179)
T d1qora2          98 VRVVYDSVGR-DTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIA  176 (179)
T ss_dssp             EEEEEECSCG-GGHHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHHTTSCEEECCCHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCccH-HHHHHHHHHHhcCCeeeecccccCCccccchhhhhccceEEEEeeEEeeecCCHHHHHHHHHHHHHHHH
Confidence            4899999975 669999999999999999986554 5555555544433 3332211     111    23556777777


Q ss_pred             cC
Q psy12355         70 SG   71 (112)
Q Consensus        70 ~g   71 (112)
                      +|
T Consensus       177 ~G  178 (179)
T d1qora2         177 SG  178 (179)
T ss_dssp             TT
T ss_pred             Cc
Confidence            76

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.01  E-value=0.012  Score=34.08  Aligned_cols=35  Identities=14%  Similarity=-0.015  Sum_probs=31.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ   35 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~   35 (112)
                      +|+|+||+|.-.+.+++-..+..|-+.|..|.+..
T Consensus        80 vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~~  114 (172)
T d2czca2          80 VDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKA  114 (172)
T ss_dssp             CSEEEECCSTTHHHHHHHHHHHHTCEEEECTTSCG
T ss_pred             CCEEEECCCCCCCHHHHHHHHHcCCCEEEECCCCc
Confidence            69999999998888999999999999999987654

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=94.05  E-value=0.034  Score=32.04  Aligned_cols=34  Identities=12%  Similarity=-0.109  Sum_probs=29.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP   34 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~   34 (112)
                      +|+|+||+|.-.+...+-..+..|-+.+..+.+.
T Consensus        79 vDvViEcTG~f~~~~~~~~hl~~G~K~vi~~~~~  112 (171)
T d1cf2o1          79 ADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGEK  112 (171)
T ss_dssp             CSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSC
T ss_pred             CCEEEEccCCCCCHHHHHHHHHcCCCEEEECCCC
Confidence            6999999999878888888999998888877654

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.89  E-value=0.068  Score=30.92  Aligned_cols=34  Identities=6%  Similarity=-0.066  Sum_probs=27.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP   34 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~   34 (112)
                      +|+|+||+|.-...+++-..++.|-+.+..|...
T Consensus        78 vDiViecTG~f~~~e~a~~hl~~G~KvIi~~~~~  111 (178)
T d1b7go1          78 SDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGGEK  111 (178)
T ss_dssp             CSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSC
T ss_pred             CCEEEECCCCcCCHHHHHHHHHcCCEEEEECCCC
Confidence            5999999998777888888888877777765443

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=92.29  E-value=0.045  Score=31.62  Aligned_cols=35  Identities=14%  Similarity=0.020  Sum_probs=29.8

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ   35 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~   35 (112)
                      +|+|+||+|.-.+...+.+.|..|-+-|++..|.+
T Consensus        92 vDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~  126 (173)
T d1obfo1          92 VDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGG  126 (173)
T ss_dssp             CSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCC
T ss_pred             cceEEEecccccCHHHHHHHhccCCcceEEecCCC
Confidence            69999999987777888899999999899887654

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=92.28  E-value=0.069  Score=30.69  Aligned_cols=68  Identities=10%  Similarity=0.123  Sum_probs=43.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccc-c----ChhhhhhcCeeEEeEeccC-CCHHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVS-V----PLVNACAKEIDILSCFRYV-NDYPDALEMVA   69 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~-~----~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~   69 (112)
                      +|+|+||+|.-.+.+.+...+..|.+=|++..|....+ +    +-..+ ..+..+.+...++ ..+.-+++.+.
T Consensus        88 vD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~~d~~~iV~GVN~~~~-~~~~~IIS~aSCTtn~laP~~k~l~  161 (169)
T d1dssg1          88 AEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSADAPMFVCGVNLEKY-SKDMKVVSNASNEFGYSQRVIDLIK  161 (169)
T ss_dssp             CCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCSSSCBCCTTTSGGGC-CTTCCEEECCCTTHHHHHHHHHHHH
T ss_pred             CCEEEecCceEcCHHHHHHHHhcCCceEeecCCccccceeeeccccccc-CCCCCEEEChhHHHHHHHHHHHHHH
Confidence            69999999998888889999999999999987664321 1    11122 2344555544333 45555555444

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=91.87  E-value=0.062  Score=30.80  Aligned_cols=35  Identities=9%  Similarity=-0.027  Sum_probs=30.1

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ   35 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~   35 (112)
                      +|+|+||+|.-.+.+.+...+..|.+=|+++.|..
T Consensus        89 vDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~~  123 (166)
T d1gado1          89 VDVVAEATGLFLTDETARKHITAGAKKVVMTGPSK  123 (166)
T ss_dssp             CSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS
T ss_pred             CCEEEEccccccCHHHHHHHhcCCCceEEeecccc
Confidence            69999999987778888899999988888887664

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=91.59  E-value=0.064  Score=30.88  Aligned_cols=68  Identities=7%  Similarity=0.047  Sum_probs=42.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCcc--ccCh----hhhhhcCeeEEeEeccC-CCHHHHHHHH
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMV--SVPL----VNACAKEIDILSCFRYV-NDYPDALEMV   68 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~--~~~~----~~~~~~~~~l~g~~~~~-~~~~~~~~~~   68 (112)
                      +|+|+||+|.-.+.+.+...+..|-+=|++..+....  .+=+    ...-.+...+.+...++ ..+.-+++.+
T Consensus        89 vDiViEcTG~f~t~~~~~~hl~~gakkViiSap~~d~~~t~V~GvN~~~~~~~~~~iIS~aSCTtn~laPv~kvl  163 (171)
T d3cmco1          89 VDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASNETGYSHRVVDLA  163 (171)
T ss_dssp             CCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTSGGGCCTTTCCEEECCCTTHHHHHHHHHHH
T ss_pred             CcEEEEecCccCCHHHHHHHHhCCCceEEEecccccccceeeeccchheecCCCCeEEEehhHHHhHHHHHHHHH
Confidence            6999999998877888888899888888888766422  2211    12222444555544333 4444444444

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=91.54  E-value=0.23  Score=28.43  Aligned_cols=35  Identities=9%  Similarity=0.073  Sum_probs=29.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ   35 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~   35 (112)
                      +|+|+||+|.-.+...+...+..|-+=|++..|..
T Consensus        90 vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~~  124 (169)
T d1u8fo1          90 AEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSA  124 (169)
T ss_dssp             CCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCS
T ss_pred             CCEEEEecceeccHHHHHHHHhcCCceEeeccccc
Confidence            59999999987777888888999998888887664

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.21  E-value=0.027  Score=33.79  Aligned_cols=30  Identities=20%  Similarity=0.076  Sum_probs=23.8

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV   30 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~   30 (112)
                      ||+|+-+.+.+......++.|++||+++..
T Consensus       151 fD~I~~~~~~~~ip~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         151 YDAIHVGAAAPVVPQALIDQLKPGGRLILP  180 (224)
T ss_dssp             EEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             hhhhhhhcchhhcCHHHHhhcCCCcEEEEE
Confidence            588887665666667789999999999874

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.93  E-value=0.088  Score=30.12  Aligned_cols=35  Identities=17%  Similarity=0.173  Sum_probs=30.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ   35 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~   35 (112)
                      +|+|+||+|.-.+.+.+...+..|.+=|++..|..
T Consensus        89 vdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~k  123 (166)
T d2b4ro1          89 VDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPK  123 (166)
T ss_dssp             CSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS
T ss_pred             CCEEEEecccccchhhhhhhhccCCCEEEEecccc
Confidence            69999999987778888899999988888887654

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=90.83  E-value=0.085  Score=30.29  Aligned_cols=35  Identities=9%  Similarity=0.072  Sum_probs=29.4

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ   35 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~   35 (112)
                      +|+|+||+|.-.+...+...+..|-+=|+++.|..
T Consensus        90 vD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP~k  124 (169)
T d1hdgo1          90 VDFVIESTGVFRNREKAELHLQAGAKKVIITAPAK  124 (169)
T ss_dssp             CCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             CCEEEEecceeccccchhhhccCCCceEEEecccC
Confidence            59999999987777888889988888888887764

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.43  E-value=0.095  Score=30.66  Aligned_cols=35  Identities=6%  Similarity=0.095  Sum_probs=29.9

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ   35 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~   35 (112)
                      +|+|+||+|.-.+.+.+...+..|-+=|++..|.+
T Consensus       104 vDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~  138 (190)
T d1k3ta1         104 VEYVIESTGLFTAKAAAEGHLRGGARKVVISAPAS  138 (190)
T ss_dssp             CCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             CcEEEEecccccccccchhhcccCcceeeeccCCc
Confidence            69999999987778889999999988888887654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.28  E-value=0.036  Score=32.88  Aligned_cols=30  Identities=13%  Similarity=0.241  Sum_probs=23.0

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV   30 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~   30 (112)
                      ||+|+.+.+........++.|++||+++..
T Consensus       145 fD~I~~~~~~~~~p~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         145 YDVIFVTVGVDEVPETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             EEEEEECSBBSCCCHHHHHHEEEEEEEEEE
T ss_pred             hhhhhhhccHHHhHHHHHHhcCCCcEEEEE
Confidence            588887665555556788999999999874

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=88.81  E-value=0.055  Score=32.45  Aligned_cols=30  Identities=17%  Similarity=0.016  Sum_probs=23.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV   30 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~   30 (112)
                      ||+|+-+.+.+......++.|++||+++..
T Consensus       135 fD~Iiv~~a~~~ip~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         135 YDRVVVWATAPTLLCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             EEEEEESSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             HHHHHhhcchhhhhHHHHHhcCCCCEEEEE
Confidence            588886655556567788999999999875

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=88.76  E-value=0.13  Score=29.59  Aligned_cols=35  Identities=14%  Similarity=0.035  Sum_probs=28.5

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ   35 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~   35 (112)
                      +|+|+||+|.-...+.+-..+..|-+=|++..|.+
T Consensus        91 vDiViEcTG~f~~~~~~~~hl~~GakkViiSAP~k  125 (172)
T d1rm4a1          91 IDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGK  125 (172)
T ss_dssp             CCEEEECSSSCCBHHHHHHHHHTTCSCEEESSCCB
T ss_pred             CCEEEecCceEccHHHHHHHHhcCCceEEeecccc
Confidence            69999999986667778888888887788877664

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=87.22  E-value=0.15  Score=29.17  Aligned_cols=35  Identities=9%  Similarity=0.066  Sum_probs=29.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ   35 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~   35 (112)
                      +|+|+||+|.-.+.+.+...+..|.+=|+++.|.+
T Consensus        87 vdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~k  121 (168)
T d2g82a1          87 VGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAK  121 (168)
T ss_dssp             EEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             CceeEeccccccchHHhhhhhccccceeeeccccc
Confidence            48999999987778888899998888888887764

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.91  E-value=0.085  Score=31.40  Aligned_cols=30  Identities=23%  Similarity=0.287  Sum_probs=23.3

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV   30 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~   30 (112)
                      ||+|+-+.+.+..-...++.|++||+++..
T Consensus       146 fD~Iiv~~a~~~ip~~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         146 YDVIIVTAGAPKIPEPLIEQLKIGGKLIIP  175 (215)
T ss_dssp             EEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             ceeEEeecccccCCHHHHHhcCCCCEEEEE
Confidence            578887665655557789999999999864

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.56  E-value=0.092  Score=31.39  Aligned_cols=31  Identities=26%  Similarity=0.225  Sum_probs=23.6

Q ss_pred             CcEEEEcccChHHHHHHHhhccCCcEEEE-Ee
Q psy12355          1 MMLYLDPLGTENCLTLGINVTKMGGKLML-VG   31 (112)
Q Consensus         1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~-~g   31 (112)
                      ||.|+-+.+.+..-...++.|++||+++. +|
T Consensus       160 fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         160 YNAIHVGAAAPDTPTELINQLASGGRLIVPVG  191 (223)
T ss_dssp             EEEEEECSCBSSCCHHHHHTEEEEEEEEEEES
T ss_pred             eeeEEEEeechhchHHHHHhcCCCcEEEEEEe
Confidence            57777666555555778899999999986 45

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=86.22  E-value=0.15  Score=31.00  Aligned_cols=31  Identities=10%  Similarity=-0.034  Sum_probs=23.1

Q ss_pred             CcEEEEcccCh-HHHHHHHhhccCCcEEEEEe
Q psy12355          1 MMLYLDPLGTE-NCLTLGINVTKMGGKLMLVG   31 (112)
Q Consensus         1 ~D~v~d~~g~~-~~~~~~~~~l~~~G~iv~~g   31 (112)
                      ||.|+--.+.+ ..+..+.++|+|||+++.+.
T Consensus       155 fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~  186 (250)
T d1yb2a1         155 YDAVIADIPDPWNHVQKIASMMKPGSVATFYL  186 (250)
T ss_dssp             EEEEEECCSCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             eeeeeecCCchHHHHHHHHHhcCCCceEEEEe
Confidence            46666333343 56899999999999999874

>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=82.83  E-value=0.97  Score=22.63  Aligned_cols=29  Identities=17%  Similarity=0.098  Sum_probs=24.9

Q ss_pred             EEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355          3 LYLDPLGTENCLTLGINVTKMGGKLMLVG   31 (112)
Q Consensus         3 ~v~d~~g~~~~~~~~~~~l~~~G~iv~~g   31 (112)
                      ++++++|.+.-+...++.|++.|.+..+.
T Consensus        43 ~iie~tG~~~~id~fi~~l~~~g~I~Eiv   71 (86)
T d2f1fa2          43 YTVQLAGTSGKLDAFLASIRDVAKIVEVA   71 (86)
T ss_dssp             EEEEEEECHHHHHHHHHHHTTTSEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHhhccCCEEEEE
Confidence            67899999999999999999999766553

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.13  E-value=0.45  Score=29.08  Aligned_cols=31  Identities=16%  Similarity=0.045  Sum_probs=22.9

Q ss_pred             CcEEEEcccCh-HHHHHHHhhccCCcEEEEEe
Q psy12355          1 MMLYLDPLGTE-NCLTLGINVTKMGGKLMLVG   31 (112)
Q Consensus         1 ~D~v~d~~g~~-~~~~~~~~~l~~~G~iv~~g   31 (112)
                      ||.|+--.+.+ ..+..+.++|++||+++.+-
T Consensus       169 fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~  200 (264)
T d1i9ga_         169 VDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYV  200 (264)
T ss_dssp             EEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             cceEEEecCCHHHHHHHHHhccCCCCEEEEEe
Confidence            46555334444 57888999999999999874