Psyllid ID: psy12376

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------9
Protein Sequence
MNLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTKSKPSTET
Secondary Structure (PSIPRED)
ccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEcccccccEEccEEEEEEcccEEEEEEccccEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHcHHHHHHHcccccEEEEEEccccEEEEEcccccEEEEccccccHcHccEEEEEccccEEEEEccccccEcEEEcccccccccccc
Coil and Loop (DISEMBL)
MNLRYYIFLLQTSQVGQVLAIGTargnltvynhmtskrvpvlgkhtNTIVGQVLAIGTARgnltvynhmtskrvpvlgkhtkskpstet
Flexible Loop (DISEMBL)
MNLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVGQVLAIGTARGNLTVYNHmtskrvpvlgkhtkskpstet
Low Complexity Region (SEG)
MNLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTKSKPSTET
Disordered region (IsUnstruct)
**LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVGQVLAIGTARGNLTVYNHMTSK*****************
Disordered Region (DISOPRED)
****YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVGQVLAIGTARGNLTVYNHMT*******************
Disordered Region (DISEMBL)
MNLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVGQVLAIGTARGNLTVYNHMTSKRVPV*************
Disordered Region (DISPRO)
*NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVGQVLAIGTARGNLTVYNHMTSKRVPVLGKH*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTKSKPSTET
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	89	2.2.26 [Sep-21-2011]
Q3UGF1	1341	WD repeat-containing prot	yes	N/A	0.887	0.058	0.402	6e-10
Q8NEZ3	1342	WD repeat-containing prot	yes	N/A	0.741	0.049	0.430	3e-09

>sp|Q3UGF1|WDR19_MOUSE WD repeat-containing protein 19 OS=Mus musculus GN=Wdr19 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 13/92 (14%)

Query: 3   LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV------GQVLAI 56
           +R  +  L  S++G  LA+GT +GNL +YNH TS+++PVLGKHT  I         +LA+
Sbjct: 96  MRDQMSFLLWSKIGSFLAVGTIKGNLLIYNHQTSRKIPVLGKHTKKITCGCWNSENLLAL 155

Query: 57  GTARGNLTVYNHM--TSKRVPVLGKHTKSKPS 86
           G     +TV N    T ++ PV     KS+PS
Sbjct: 156 GGEDKMITVSNQEGDTIRQTPV-----KSEPS 182

May be involved in cilia function and/or assembly.
Mus musculus (taxid: 10090)

>sp|Q8NEZ3|WDR19_HUMAN WD repeat-containing protein 19 OS=Homo sapiens GN=WDR19 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 3   LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV------GQVLAI 56
           +R  +  L  S+VG  LA+GT +GNL +YNH TS+++PVLGKHT  I         +LA+
Sbjct: 96  MRDQMSFLLWSKVGSFLAVGTVKGNLLIYNHQTSRKIPVLGKHTKRITCGCWNAENLLAL 155

Query: 57  GTARGNLTVYNH 68
           G     +TV N 
Sbjct: 156 GGEDKMITVSNQ 167

May be involved in cilia function and/or assembly.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
22651381	1282	WD repeat membrane protein [Mus musculus	0.887	0.061	0.402	2e-08
154240688	1341	WD repeat-containing protein 19 [Mus mus	0.887	0.058	0.402	2e-08
26342545	1021	unnamed protein product [Mus musculus]	0.887	0.077	0.402	2e-08
156348545	959	hypothetical protein NEMVEDRAFT_v1g14330	0.730	0.067	0.436	3e-08
330340430	1341	WD repeat-containing protein 19 [Rattus	0.887	0.058	0.402	3e-08
149035370	1035	WD repeat domain 19 (predicted), isoform	0.887	0.076	0.402	3e-08
432844941	1345	PREDICTED: WD repeat-containing protein	0.629	0.041	0.467	3e-08
26335950	438	unnamed protein product [Mus musculus]	0.887	0.180	0.402	3e-08
440904764	1345	WD repeat-containing protein 19, partial	0.887	0.058	0.391	4e-08
329664856	1342	WD repeat-containing protein 19 [Bos tau	0.887	0.058	0.391	4e-08

>gi|22651381|gb|AAK38746.1| WD repeat membrane protein [Mus musculus]

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 13/92 (14%)

Query: 3   LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV------GQVLAI 56
           +R  +  L  S++G  LA+GT +GNL +YNH TS+++PVLGKHT  I         +LA+
Sbjct: 37  MRDQMSFLLWSKIGSFLAVGTIKGNLLIYNHQTSRKIPVLGKHTKKITCGCWNSENLLAL 96

Query: 57  GTARGNLTVYNHM--TSKRVPVLGKHTKSKPS 86
           G     +TV N    T ++ PV     KS+PS
Sbjct: 97  GGEDKMITVSNQEGDTIRQTPV-----KSEPS 123

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|154240688|ref|NP_700440.2| WD repeat-containing protein 19 [Mus musculus] gi|94730677|sp|Q3UGF1.1|WDR19_MOUSE RecName: Full=WD repeat-containing protein 19 gi|74190976|dbj|BAE28258.1| unnamed protein product [Mus musculus] gi|148705784|gb|EDL37731.1| WD repeat domain 19, isoform CRA_b [Mus musculus] gi|183396883|gb|AAI66024.1| WD repeat domain 19 [synthetic construct]

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 13/92 (14%)

Query: 3   LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV------GQVLAI 56
           +R  +  L  S++G  LA+GT +GNL +YNH TS+++PVLGKHT  I         +LA+
Sbjct: 96  MRDQMSFLLWSKIGSFLAVGTIKGNLLIYNHQTSRKIPVLGKHTKKITCGCWNSENLLAL 155

Query: 57  GTARGNLTVYNHM--TSKRVPVLGKHTKSKPS 86
           G     +TV N    T ++ PV     KS+PS
Sbjct: 156 GGEDKMITVSNQEGDTIRQTPV-----KSEPS 182

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|26342545|dbj|BAC34929.1| unnamed protein product [Mus musculus]

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 13/92 (14%)

Query: 3   LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV------GQVLAI 56
           +R  +  L  S++G  LA+GT +GNL +YNH TS+++PVLGKHT  I         +LA+
Sbjct: 96  MRDQMSFLLWSKIGSFLAVGTIKGNLLIYNHQTSRKIPVLGKHTKKITCGCWNSENLLAL 155

Query: 57  GTARGNLTVYNHM--TSKRVPVLGKHTKSKPS 86
           G     +TV N    T ++ PV     KS+PS
Sbjct: 156 GGEDKMITVSNQEGDTIRQTPV-----KSEPS 182

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156348545|ref|XP_001621888.1| hypothetical protein NEMVEDRAFT_v1g143309 [Nematostella vectensis] gi|156208216|gb|EDO29788.1| predicted protein [Nematostella vectensis]

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 6/71 (8%)

Query: 3   LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTI------VGQVLAI 56
           LR  +  L  S+VG  LAIGT++GNL +YNH TS+++P+LGKHT  I         +LA+
Sbjct: 97  LRDTLTFLLWSKVGPQLAIGTSKGNLLIYNHQTSRKIPILGKHTKKISCGCWNTENLLAL 156

Query: 57  GTARGNLTVYN 67
           G+   ++T+ N
Sbjct: 157 GSEDKSITISN 167

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|330340430|ref|NP_001178608.2| WD repeat-containing protein 19 [Rattus norvegicus]

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 13/92 (14%)

Query: 3   LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTI------VGQVLAI 56
           +R  +  L  S++G  LA+GT +GNL +YNH TS+++PVLGKHT  I         +LA+
Sbjct: 96  MRDQMSFLLWSKIGSFLAVGTIKGNLLIYNHQTSRKIPVLGKHTKKITCGCWNTENLLAL 155

Query: 57  GTARGNLTVYNHM--TSKRVPVLGKHTKSKPS 86
           G     +TV N    T ++ PV     KS+PS
Sbjct: 156 GGEDRMITVSNQEGDTIRQTPV-----KSEPS 182

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149035370|gb|EDL90074.1| WD repeat domain 19 (predicted), isoform CRA_a [Rattus norvegicus]

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 13/92 (14%)

Query: 3   LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTI------VGQVLAI 56
           +R  +  L  S++G  LA+GT +GNL +YNH TS+++PVLGKHT  I         +LA+
Sbjct: 96  MRDQMSFLLWSKIGSFLAVGTIKGNLLIYNHQTSRKIPVLGKHTKKITCGCWNTENLLAL 155

Query: 57  GTARGNLTVYNHM--TSKRVPVLGKHTKSKPS 86
           G     +TV N    T ++ PV     KS+PS
Sbjct: 156 GGEDRMITVSNQEGDTIRQTPV-----KSEPS 182

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432844941|ref|XP_004065785.1| PREDICTED: WD repeat-containing protein 19-like [Oryzias latipes]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 6/62 (9%)

Query: 13  SQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV------GQVLAIGTARGNLTVY 66
           S+ G +LA+GTA+GNL +YN  TS+++PVLGKHT  I         +LA+G+    LT+ 
Sbjct: 107 SKTGPLLAVGTAKGNLLIYNRQTSRKIPVLGKHTKRITCGCWNSQNLLALGSDDNTLTIS 166

Query: 67  NH 68
           NH
Sbjct: 167 NH 168

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|26335950|dbj|BAC31673.1| unnamed protein product [Mus musculus]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 13/92 (14%)

Query: 3   LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV------GQVLAI 56
           +R  +  L  S++G  LA+GT +GNL +YNH TS+++PVLGKHT  I         +LA+
Sbjct: 96  MRDQMSFLLWSKIGSFLAVGTIKGNLLIYNHQTSRKIPVLGKHTKKITCGCWNSENLLAL 155

Query: 57  GTARGNLTVYNHM--TSKRVPVLGKHTKSKPS 86
           G     +TV N    T ++ PV     KS+PS
Sbjct: 156 GGEDKMITVSNQEGDTIRQTPV-----KSEPS 182

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|440904764|gb|ELR55229.1| WD repeat-containing protein 19, partial [Bos grunniens mutus]

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 13/92 (14%)

Query: 3   LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV------GQVLAI 56
           LR  +  L  S+ G  LA+GT +GNL +YNH TS+++PV+GKHT  I         +LA+
Sbjct: 94  LRDQLSFLLWSKFGSFLAVGTVKGNLLIYNHQTSRKIPVIGKHTKKITCGCWNAENMLAL 153

Query: 57  GTARGNLTVYNHM--TSKRVPVLGKHTKSKPS 86
           G     +TV N    T +++PV     +S+PS
Sbjct: 154 GGEDKMITVSNQEGDTIRQIPV-----RSEPS 180

Source: Bos grunniens mutus

Species: Bos grunniens

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|329664856|ref|NP_001192956.1| WD repeat-containing protein 19 [Bos taurus]

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 13/92 (14%)

Query: 3   LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV------GQVLAI 56
           LR  +  L  S+ G  LA+GT +GNL +YNH TS+++PV+GKHT  I         +LA+
Sbjct: 96  LRDQLSFLLWSKFGSFLAVGTVKGNLLIYNHQTSRKIPVIGKHTKKITCGCWNAENMLAL 155

Query: 57  GTARGNLTVYNHM--TSKRVPVLGKHTKSKPS 86
           G     +TV N    T +++PV     +S+PS
Sbjct: 156 GGEDKMITVSNQEGDTIRQIPV-----RSEPS 182

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
UNIPROTKB|D6RE75	142	WDR19 "WD repeat-containing pr	0.662	0.415	0.5	8.4e-10
RGD|1306997	1340	Wdr19 "WD repeat domain 19" [R	0.887	0.058	0.431	5.2e-09
MGI|MGI:2443231	1341	Wdr19 "WD repeat domain 19" [M	0.820	0.054	0.448	6.7e-09
UNIPROTKB|E1B7Q4	1342	WDR19 "Uncharacterized protein	0.887	0.058	0.402	1.4e-08
UNIPROTKB|Q8NEZ3	1342	WDR19 "WD repeat-containing pr	0.662	0.043	0.5	2.9e-08
UNIPROTKB|I3LLZ8	1330	WDR19 "Uncharacterized protein	0.820	0.054	0.425	2e-07
UNIPROTKB|E1C1Y1	1342	WDR19 "Uncharacterized protein	0.662	0.043	0.454	2.6e-07
FB|FBgn0034452	1366	Oseg6 "Oseg6" [Drosophila mela	0.775	0.050	0.397	3.1e-06
WB|WBGene00001118	1383	dyf-2 [Caenorhabditis elegans	0.640	0.041	0.419	0.00089

UNIPROTKB|D6RE75 WDR19 "WD repeat-containing protein 19" [Homo sapiens (taxid:9606)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 33/66 (50%), Positives = 43/66 (65%)

Query:     8 FLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV-G-----QVLAIGTARG 61
             FLL  S+VG  LA+GT +GNL +YNH TS+++PVLGKHT  I  G      +LA+G    
Sbjct:    43 FLLW-SKVGSFLAVGTVKGNLLIYNHQTSRKIPVLGKHTKRITCGCWNAENLLALGGEDK 101

Query:    62 NLTVYN 67
              +TV N
Sbjct:   102 MITVSN 107

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0031076 "embryonic camera-type eye development" evidence=IEA

GO:0031514 "motile cilium" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0042471 "ear morphogenesis" evidence=IEA

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IEA

GO:0050877 "neurological system process" evidence=IEA

GO:0055123 "digestive system development" evidence=IEA

GO:0060830 "ciliary receptor clustering involved in smoothened signaling pathway" evidence=IEA

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=IEA

GO:0061055 "myotome development" evidence=IEA

RGD|1306997 Wdr19 "WD repeat domain 19" [Rattus norvegicus (taxid:10116)]

 Score = 148 (57.2 bits), Expect = 5.2e-09, P = 5.2e-09
 Identities = 38/88 (43%), Positives = 53/88 (60%)

Query:     8 FLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV-G-----QVLAIGTARG 61
             FLL  S++G  LA+GT +GNL +YNH TS+++PVLGKHT  I  G      +LA+G    
Sbjct:   101 FLLW-SKIGSFLAVGTIKGNLLIYNHQTSRKIPVLGKHTKKITCGCWNTENLLALGGEDR 159

Query:    62 NLTVYNHM--TSKRVPVLGKHTKSKPST 87
              +TV N    T ++ PV  + +  K ST
Sbjct:   160 MITVSNQEGDTIRQTPVKSEPSDIKFST 187

GO:0000902 "cell morphogenesis" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=IEA;ISO

GO:0005929 "cilium" evidence=ISO

GO:0007224 "smoothened signaling pathway" evidence=ISO

GO:0030326 "embryonic limb morphogenesis" evidence=IEA;ISO

GO:0030991 "intraflagellar transport particle A" evidence=ISO

GO:0031076 "embryonic camera-type eye development" evidence=IEA;ISO

GO:0031513 "nonmotile primary cilium" evidence=ISO

GO:0031514 "motile cilium" evidence=IEA;ISO

GO:0032391 "photoreceptor connecting cilium" evidence=IEA;ISO

GO:0042384 "cilium assembly" evidence=IEA;ISO

GO:0042471 "ear morphogenesis" evidence=IEA;ISO

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IEA;ISO

GO:0050877 "neurological system process" evidence=IEA;ISO

GO:0055123 "digestive system development" evidence=IEA;ISO

GO:0060271 "cilium morphogenesis" evidence=ISO

GO:0060830 "ciliary receptor clustering involved in smoothened signaling pathway" evidence=IEA;ISO

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=IEA;ISO

GO:0061055 "myotome development" evidence=IEA;ISO

MGI|MGI:2443231 Wdr19 "WD repeat domain 19" [Mus musculus (taxid:10090)]

 Score = 147 (56.8 bits), Expect = 6.7e-09, P = 6.7e-09
 Identities = 39/87 (44%), Positives = 53/87 (60%)

Query:     8 FLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV-G-----QVLAIGTARG 61
             FLL  S++G  LA+GT +GNL +YNH TS+++PVLGKHT  I  G      +LA+G    
Sbjct:   102 FLLW-SKIGSFLAVGTIKGNLLIYNHQTSRKIPVLGKHTKKITCGCWNSENLLALGGEDK 160

Query:    62 NLTVYNHM--TSKRVPVLGKHTKSKPS 86
              +TV N    T ++ PV     KS+PS
Sbjct:   161 MITVSNQEGDTIRQTPV-----KSEPS 182

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005929 "cilium" evidence=IDA

GO:0007224 "smoothened signaling pathway" evidence=IMP

GO:0030030 "cell projection organization" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IMP

GO:0030991 "intraflagellar transport particle A" evidence=ISO

GO:0031076 "embryonic camera-type eye development" evidence=IMP

GO:0031513 "nonmotile primary cilium" evidence=IDA

GO:0031514 "motile cilium" evidence=IDA

GO:0032391 "photoreceptor connecting cilium" evidence=IDA

GO:0042384 "cilium assembly" evidence=IMP

GO:0042471 "ear morphogenesis" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IMP

GO:0050877 "neurological system process" evidence=IMP

GO:0055123 "digestive system development" evidence=IMP

GO:0060271 "cilium morphogenesis" evidence=IGI;IMP

GO:0060830 "ciliary receptor clustering involved in smoothened signaling pathway" evidence=IGI

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=IGI;IMP

GO:0061055 "myotome development" evidence=IMP

UNIPROTKB|E1B7Q4 WDR19 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 144 (55.7 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 37/92 (40%), Positives = 54/92 (58%)

Query:     3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV-G-----QVLAI 56
             LR  +  L  S+ G  LA+GT +GNL +YNH TS+++PV+GKHT  I  G      +LA+
Sbjct:    96 LRDQLSFLLWSKFGSFLAVGTVKGNLLIYNHQTSRKIPVIGKHTKKITCGCWNAENMLAL 155

Query:    57 GTARGNLTVYNHM--TSKRVPVLGKHTKSKPS 86
             G     +TV N    T +++PV     +S+PS
Sbjct:   156 GGEDKMITVSNQEGDTIRQIPV-----RSEPS 182

GO:0061055 "myotome development" evidence=IEA

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=IEA

GO:0060830 "ciliary receptor clustering involved in smoothened signaling pathway" evidence=IEA

GO:0055123 "digestive system development" evidence=IEA

GO:0050877 "neurological system process" evidence=IEA

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IEA

GO:0042471 "ear morphogenesis" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0031514 "motile cilium" evidence=IEA

GO:0031076 "embryonic camera-type eye development" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

UNIPROTKB|Q8NEZ3 WDR19 "WD repeat-containing protein 19" [Homo sapiens (taxid:9606)]

 Score = 141 (54.7 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 33/66 (50%), Positives = 43/66 (65%)

Query:     8 FLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV-G-----QVLAIGTARG 61
             FLL  S+VG  LA+GT +GNL +YNH TS+++PVLGKHT  I  G      +LA+G    
Sbjct:   102 FLLW-SKVGSFLAVGTVKGNLLIYNHQTSRKIPVLGKHTKRITCGCWNAENLLALGGEDK 160

Query:    62 NLTVYN 67
              +TV N
Sbjct:   161 MITVSN 166

GO:0005737 "cytoplasm" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0031076 "embryonic camera-type eye development" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0042471 "ear morphogenesis" evidence=IEA

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IEA

GO:0050877 "neurological system process" evidence=IEA

GO:0055123 "digestive system development" evidence=IEA

GO:0060830 "ciliary receptor clustering involved in smoothened signaling pathway" evidence=IEA

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=IEA

GO:0061055 "myotome development" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=ISS

GO:0031513 "nonmotile primary cilium" evidence=ISS

GO:0031514 "motile cilium" evidence=ISS

GO:0030991 "intraflagellar transport particle A" evidence=IDA

UNIPROTKB|I3LLZ8 WDR19 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 133 (51.9 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 37/87 (42%), Positives = 51/87 (58%)

Query:     8 FLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV-G-----QVLAIGTARG 61
             FLL  S+ G  LA+GT +GNL +YN  TS+++PVLGKHT  I  G      +LA+G    
Sbjct:    89 FLLW-SKFGSFLAVGTVKGNLLIYNRQTSRKIPVLGKHTKRITCGCWNAENMLALGGEDK 147

Query:    62 NLTVYNHM--TSKRVPVLGKHTKSKPS 86
              +TV N    T ++ PV     +S+PS
Sbjct:   148 MITVSNQEGDTIRQTPV-----RSEPS 169

GO:0061055 "myotome development" evidence=IEA

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=IEA

GO:0060830 "ciliary receptor clustering involved in smoothened signaling pathway" evidence=IEA

GO:0055123 "digestive system development" evidence=IEA

GO:0050877 "neurological system process" evidence=IEA

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IEA

GO:0042471 "ear morphogenesis" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0031514 "motile cilium" evidence=IEA

GO:0031076 "embryonic camera-type eye development" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

UNIPROTKB|E1C1Y1 WDR19 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 132 (51.5 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 30/66 (45%), Positives = 43/66 (65%)

Query:     8 FLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV-G-----QVLAIGTARG 61
             FLL  S+VG +LA+GT +GNL +YN  TS+++P+LGKHT  I  G      +LA+G    
Sbjct:   102 FLLW-SRVGALLAVGTTKGNLLIYNRQTSRKIPILGKHTKRITCGCWSTENLLALGGEDK 160

Query:    62 NLTVYN 67
              +T+ N
Sbjct:   161 MITISN 166

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0031076 "embryonic camera-type eye development" evidence=IEA

GO:0031514 "motile cilium" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0042471 "ear morphogenesis" evidence=IEA

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IEA

GO:0050877 "neurological system process" evidence=IEA

GO:0055123 "digestive system development" evidence=IEA

GO:0060830 "ciliary receptor clustering involved in smoothened signaling pathway" evidence=IEA

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=IEA

GO:0061055 "myotome development" evidence=IEA

FB|FBgn0034452 Oseg6 "Oseg6" [Drosophila melanogaster (taxid:7227)]

 Score = 122 (48.0 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 31/78 (39%), Positives = 49/78 (62%)

Query:    14 QVGQVLAIGTARG-NLTVYNHMTSKRVPV-LG-KHTNTIV-----GQVLAIGTARGNLTV 65
             Q G +L I T+   N+T++++ + +++ V  G +   T +      Q+LA+GT RGNL +
Sbjct:    63 QEGDLLGIITSGSPNITLWDYNSQEKISVETGLRDPLTCILWSKQQQLLAVGTGRGNLAI 122

Query:    66 YNHMTSKR-VPVLGKHTK 82
             YNH + KR  PVLGKH+K
Sbjct:   123 YNHSSGKRPTPVLGKHSK 140

GO:0035058 "nonmotile primary cilium assembly" evidence=ISS

GO:0042384 "cilium assembly" evidence=ISM;IEP

GO:0031513 "nonmotile primary cilium" evidence=IDA

WB|WBGene00001118 dyf-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 99 (39.9 bits), Expect = 0.00089, P = 0.00089
 Identities = 26/62 (41%), Positives = 35/62 (56%)

Query:    24 ARGNLTVYNHMTS-KRVPV-LGKHTNTIVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHT 81
             +R   TV +  TS K +P  L    +T     L IG   GN+ VYNH TS+R+ V+GKH 
Sbjct:   106 SRNTDTVESGATSSKELPTCLAWSPST---PTLVIGNNAGNIVVYNHRTSRRIAVMGKHQ 162

Query:    82 KS 83
             +S
Sbjct:   163 RS 164

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0042048 "olfactory behavior" evidence=IMP

GO:0006935 "chemotaxis" evidence=IMP

GO:0007635 "chemosensory behavior" evidence=IMP

GO:0031513 "nonmotile primary cilium" evidence=IDA

GO:0042073 "intraflagellar transport" evidence=IDA

GO:0035058 "nonmotile primary cilium assembly" evidence=IMP

GO:0030992 "intraflagellar transport particle B" evidence=IDA

GO:0008104 "protein localization" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	89
KOG0271|consensus	480		99.83
KOG0266|consensus	456		99.73
KOG0272|consensus	459		99.73
KOG0263|consensus	707		99.71
KOG0266|consensus	456		99.68
KOG0271|consensus	480		99.68
KOG0272|consensus	459		99.68
PTZ00421	493	coronin; Provisional	99.66
KOG0285|consensus	460		99.63
PTZ00421	493	coronin; Provisional	99.62
KOG0319|consensus	775		99.59
KOG0263|consensus	707		99.58
KOG0265|consensus	338		99.58
KOG0273|consensus	524		99.58
KOG0286|consensus	343		99.57
KOG0295|consensus	406		99.55
KOG0291|consensus	893		99.55
KOG0286|consensus	343		99.54
KOG0316|consensus	307		99.54
KOG0319|consensus	775		99.54
KOG0265|consensus	338		99.53
KOG0315|consensus	311		99.52
KOG0281|consensus	499		99.52
PTZ00420	568	coronin; Provisional	99.51
PTZ00420	568	coronin; Provisional	99.51
KOG0285|consensus	460		99.51
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.5
KOG0302|consensus	440		99.5
KOG0274|consensus	537		99.5
KOG0279|consensus	315		99.5
KOG0284|consensus	464		99.49
KOG0645|consensus	312		99.49
KOG0292|consensus	1202		99.48
KOG0318|consensus	603		99.48
KOG0318|consensus	603		99.48
KOG0273|consensus	524		99.47
KOG0279|consensus	315		99.47
KOG0276|consensus	794		99.46
KOG0308|consensus	735		99.46
KOG0973|consensus	942		99.45
KOG0647|consensus	347		99.45
KOG0282|consensus	503		99.43
KOG0643|consensus	327		99.43
KOG0275|consensus	508		99.43
KOG0316|consensus	307		99.43
KOG0647|consensus	347		99.42
KOG0277|consensus	311		99.42
KOG0264|consensus	422		99.41
KOG0289|consensus	506		99.41
KOG0293|consensus	519		99.4
KOG0274|consensus	537		99.4
KOG0281|consensus	499		99.4
KOG0264|consensus	422		99.39
PLN00181	793	protein SPA1-RELATED; Provisional	99.39
KOG0283|consensus	712		99.38
KOG0292|consensus	1202		99.37
KOG0296|consensus	399		99.36
KOG0299|consensus	479		99.36
KOG0315|consensus	311		99.36
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.36
KOG0276|consensus	794		99.36
KOG1407|consensus	313		99.36
KOG0306|consensus	888		99.36
KOG0275|consensus	508		99.35
PLN00181	793	protein SPA1-RELATED; Provisional	99.34
KOG0296|consensus	399		99.33
KOG0294|consensus	362		99.33
KOG0284|consensus	464		99.32
KOG0295|consensus	406		99.32
KOG0283|consensus	712		99.31
KOG1446|consensus	311		99.31
KOG0310|consensus	487		99.31
KOG1446|consensus	311		99.31
KOG0313|consensus	423		99.3
KOG0973|consensus	942		99.3
KOG0649|consensus	325		99.3
KOG0305|consensus	484		99.3
KOG0645|consensus	312		99.3
KOG0267|consensus	825		99.29
KOG1273|consensus	405		99.29
KOG0306|consensus	888		99.28
KOG0293|consensus	519		99.27
KOG0641|consensus	350		99.27
KOG0305|consensus	484		99.26
KOG0277|consensus	311		99.26
KOG0303|consensus	472		99.24
KOG0310|consensus	487		99.23
KOG0300|consensus	481		99.2
KOG0269|consensus	839		99.19
KOG1009|consensus	434		99.19
KOG0640|consensus	430		99.16
KOG0282|consensus	503		99.14
KOG2919|consensus	406		99.13
KOG0289|consensus	506		99.12
KOG0639|consensus	705		99.12
KOG0301|consensus	745		99.12
KOG0640|consensus	430		99.11
KOG1408|consensus	1080		99.11
KOG0294|consensus	362		99.1
KOG0302|consensus	440		99.1
KOG2096|consensus	420		99.09
KOG1310|consensus	758		99.09
KOG0313|consensus	423		99.09
KOG0267|consensus	825		99.09
KOG1034|consensus	385		99.07
KOG0291|consensus	893		99.06
KOG1007|consensus	370		99.05
KOG1036|consensus	323		99.05
KOG0278|consensus	334		99.04
KOG0303|consensus	472		99.04
KOG0772|consensus	641		99.03
KOG0643|consensus	327		99.03
KOG0299|consensus	479		99.03
KOG0644|consensus	1113		99.03
KOG1034|consensus	385		99.03
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.02
KOG0646|consensus	476		99.01
KOG1407|consensus	313		99.01
KOG4283|consensus	397		99.01
KOG0646|consensus	476		99.0
KOG1332|consensus	299		98.99
KOG0301|consensus	745		98.98
KOG1332|consensus	299		98.97
KOG0300|consensus	481		98.97
KOG2048|consensus	691		98.97
KOG1274|consensus	933		98.96
KOG0278|consensus	334		98.95
KOG2394|consensus	636		98.94
KOG1445|consensus	1012		98.93
KOG0268|consensus	433		98.92
KOG0270|consensus	463		98.91
KOG0288|consensus	459		98.91
KOG3914|consensus	390		98.9
KOG2110|consensus	391		98.9
KOG0269|consensus	839		98.89
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.88
KOG0308|consensus	735		98.87
KOG0288|consensus	459		98.87
KOG1036|consensus	323		98.86
KOG2394|consensus	636		98.86
KOG1063|consensus	764		98.85
KOG0322|consensus	323		98.85
KOG1539|consensus	910		98.82
COG2319	466	FOG: WD40 repeat [General function prediction only	98.82
KOG0639|consensus	705		98.8
KOG0268|consensus	433		98.79
KOG2445|consensus	361		98.77
KOG0641|consensus	350		98.77
KOG1274|consensus	933		98.77
KOG4283|consensus	397		98.75
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.75
KOG2055|consensus	514		98.75
KOG0290|consensus	364		98.75
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.75
KOG0321|consensus	720		98.74
KOG1538|consensus	1081		98.72
KOG1273|consensus	405		98.72
KOG2111|consensus	346		98.72
KOG1445|consensus	1012		98.71
KOG2445|consensus	361		98.7
KOG0771|consensus	398		98.7
KOG0270|consensus	463		98.68
KOG3881|consensus	412		98.64
KOG1539|consensus	910		98.64
KOG0642|consensus	577		98.62
KOG0772|consensus	641		98.62
KOG0307|consensus	1049		98.61
KOG2106|consensus	626		98.59
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.58
KOG0974|consensus	967		98.58
KOG0307|consensus	1049		98.56
KOG1408|consensus	1080		98.56
KOG0642|consensus	577		98.55
COG2319	466	FOG: WD40 repeat [General function prediction only	98.54
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.53
KOG0321|consensus	720		98.53
KOG0650|consensus	733		98.52
KOG1409|consensus	404		98.52
KOG1523|consensus	361		98.51
KOG0649|consensus	325		98.5
KOG2695|consensus	425		98.49
KOG0290|consensus	364		98.49
KOG2048|consensus	691		98.48
KOG1007|consensus	370		98.47
KOG1334|consensus	559		98.47
KOG0771|consensus	398		98.43
KOG2096|consensus	420		98.42
KOG1009|consensus	434		98.42
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.37
KOG2110|consensus	391		98.36
KOG1063|consensus	764		98.36
KOG0322|consensus	323		98.35
KOG4328|consensus	498		98.34
KOG1538|consensus	1081		98.33
KOG2919|consensus	406		98.33
KOG2106|consensus	626		98.32
KOG1587|consensus	555		98.32
KOG4328|consensus	498		98.31
KOG4547|consensus	541		98.3
KOG1188|consensus	376		98.29
KOG4227|consensus	609		98.27
KOG1524|consensus	737		98.26
KOG0974|consensus	967		98.26
KOG4378|consensus	673		98.23
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.22
KOG4378|consensus	673		98.2
KOG1272|consensus	545		98.2
KOG0280|consensus	339		98.18
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	98.16
KOG1963|consensus	792		98.11
KOG1272|consensus	545		98.11
KOG1310|consensus	758		98.11
KOG0644|consensus	1113		98.09
PRK05137	435	tolB translocation protein TolB; Provisional	98.06
PRK01742	429	tolB translocation protein TolB; Provisional	98.06
KOG1064|consensus	2439		98.06
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.03
KOG4714|consensus	319		98.02
KOG2055|consensus	514		98.0
KOG0650|consensus	733		98.0
KOG1188|consensus	376		97.99
PRK03629	429	tolB translocation protein TolB; Provisional	97.9
KOG4547|consensus	541		97.9
KOG1517|consensus	1387		97.89
KOG3881|consensus	412		97.87
KOG1587|consensus	555		97.85
KOG2139|consensus	445		97.85
PRK01742	429	tolB translocation protein TolB; Provisional	97.81
KOG0280|consensus	339		97.77
KOG1240|consensus	1431		97.76
KOG2321|consensus	703		97.76
KOG1334|consensus	559		97.73
PRK04922	433	tolB translocation protein TolB; Provisional	97.72
PRK02889	427	tolB translocation protein TolB; Provisional	97.71
KOG4227|consensus	609		97.7
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.58
PRK00178	430	tolB translocation protein TolB; Provisional	97.57
KOG2695|consensus	425		97.53
KOG1963|consensus	792		97.53
KOG2111|consensus	346		97.52
PRK11028	330	6-phosphogluconolactonase; Provisional	97.51
KOG1354|consensus	433		97.48
PRK03629	429	tolB translocation protein TolB; Provisional	97.47
KOG2079|consensus	1206		97.47
PRK04792	448	tolB translocation protein TolB; Provisional	97.46
KOG2321|consensus	703		97.45
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.44
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.43
KOG1354|consensus	433		97.41
KOG4532|consensus	344		97.4
KOG1517|consensus	1387		97.39
PRK11028	330	6-phosphogluconolactonase; Provisional	97.36
KOG1240|consensus	1431		97.36
KOG1645|consensus	463		97.34
PRK05137	435	tolB translocation protein TolB; Provisional	97.23
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.22
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.19
KOG4640|consensus	665		97.17
KOG4640|consensus	665		97.11
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.1
KOG4190|consensus	1034		97.08
KOG4532|consensus	344		97.08
KOG1912|consensus	1062		97.01
PRK02889	427	tolB translocation protein TolB; Provisional	96.99
KOG1064|consensus	2439		96.95
KOG1523|consensus	361		96.95
KOG1275|consensus	1118		96.93
PRK04922	433	tolB translocation protein TolB; Provisional	96.88
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.85
PRK01029	428	tolB translocation protein TolB; Provisional	96.84
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.79
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	96.77
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.76
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	96.75
KOG1832|consensus	1516		96.74
PRK00178	430	tolB translocation protein TolB; Provisional	96.69
KOG3914|consensus	390		96.67
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.63
KOG1524|consensus	737		96.63
KOG1912|consensus	1062		96.61
PRK01029	428	tolB translocation protein TolB; Provisional	96.58
KOG2315|consensus	566		96.55
KOG2314|consensus	698		96.54
KOG2041|consensus	1189		96.52
COG4946	668	Uncharacterized protein related to the periplasmic	96.45
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.44
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	96.41
KOG2066|consensus	846		96.39
COG4946	668	Uncharacterized protein related to the periplasmic	96.38
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.36
KOG4497|consensus	447		96.34
KOG2315|consensus	566		96.33
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.33
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	96.31
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.24
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	96.23
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.2
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.19
PRK04792	448	tolB translocation protein TolB; Provisional	96.17
KOG4497|consensus	447		96.1
KOG1409|consensus	404		95.99
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.97
KOG2314|consensus	698		95.86
KOG2139|consensus	445		95.86
KOG4714|consensus	319		95.85
KOG4649|consensus	354		95.85
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.72
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.64
KOG0882|consensus	558		95.54
PRK02888	635	nitrous-oxide reductase; Validated	95.53
KOG2114|consensus	933		95.48
KOG0309|consensus	1081		95.37
KOG2066|consensus	846		95.3
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	95.21
KOG3617|consensus	1416		95.13
KOG4190|consensus	1034		95.12
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.02
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	95.02
PRK04043	419	tolB translocation protein TolB; Provisional	94.9
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	94.87
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	94.66
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	94.63
KOG3621|consensus	726		94.35
KOG2444|consensus	238		94.29
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.16
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.02
KOG2395|consensus	644		93.88
KOG3617|consensus	1416		93.71
KOG2444|consensus	238		93.68
KOG0309|consensus	1081		93.66
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	93.62
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	93.49
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	93.46
KOG1916|consensus	1283		93.35
KOG1275|consensus	1118		92.94
PRK04043	419	tolB translocation protein TolB; Provisional	92.75
KOG3621|consensus	726		92.67
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	92.65
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	92.65
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	92.44
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	92.38
KOG4460|consensus	741		92.31
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	92.21
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	92.14
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	92.11
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.09
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.85
KOG2079|consensus	1206		91.55
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	91.42
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	90.88
KOG1645|consensus	463		90.86
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	90.71
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	90.41
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	90.25
KOG0882|consensus	558		90.2
KOG2041|consensus	1189		90.13
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	89.95
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	89.88
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	89.78
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	89.61
KOG2247|consensus	615		89.51
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	89.37
KOG4649|consensus	354		89.18
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	89.1
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	89.02
KOG2114|consensus	933		88.55
TIGR03054	135	photo_alph_chp1 putative photosynthetic complex as	88.48
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	88.44
KOG4499|consensus	310		88.24
KOG2103|consensus	910		87.74
PHA02713	557	hypothetical protein; Provisional	87.51
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	87.25
KOG2395|consensus	644		86.9
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	86.72
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	86.66
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	86.58
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.46
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	86.04
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	85.86
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	85.73
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	85.42
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	85.07
KOG4499|consensus	310		84.92
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	84.88
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	84.66
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	84.06
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	83.73
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	83.62
KOG2727|consensus	1244		83.54
KOG2247|consensus	615		82.78
PRK10115	686	protease 2; Provisional	82.09
PHA03098	534	kelch-like protein; Provisional	81.97
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	81.41
COG1520	370	FOG: WD40-like repeat [Function unknown]	81.26
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	80.52
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	80.48
KOG3616|consensus	1636		80.28

>KOG0271|consensus

Probab=99.83  E-value=2.4e-20  Score=125.02  Aligned_cols=86  Identities=20%  Similarity=0.348  Sum_probs=78.8

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEe-eEecCCcceeec------------cEEEEEeCCCCEEEEeC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRV-PVLGKHTNTIVG------------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~-~~~~~h~~~i~~------------~~las~s~d~~v~iwd~   68 (89)
                      +|..+|.|++|||||+.||+|+.||+|++||..+|+++ +.+.+|+..|.+            .+||++|.||+++|||+
T Consensus       155 gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~  234 (480)
T KOG0271|consen  155 GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT  234 (480)
T ss_pred             CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEc
Confidence            57889999999999999999999999999999887765 578899999987            79999999999999999


Q ss_pred             CCCEEEeeeCCCCCCCcCC
Q psy12376         69 MTSKRVPVLGKHTKSKPST   87 (89)
Q Consensus        69 ~~~~~~~~l~~h~~~~~~~   87 (89)
                      ..+.++..+-+|+.++.+.
T Consensus       235 ~~~~~~~~lsgHT~~VTCv  253 (480)
T KOG0271|consen  235 KLGTCVRTLSGHTASVTCV  253 (480)
T ss_pred             cCceEEEEeccCccceEEE
Confidence            9999999999999987653

>KOG0266|consensus

Probab=99.73  E-value=5.4e-17  Score=112.48  Aligned_cols=84  Identities=17%  Similarity=0.252  Sum_probs=78.3

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNH-MTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~-~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      +|...|..++|+|||+++++++.|+++++||+ ..++.++.+.+|...|.+       +++++|+.|++|+|||+++++.
T Consensus       201 ~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~  280 (456)
T KOG0266|consen  201 GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC  280 (456)
T ss_pred             ccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE
Confidence            46778999999999999999999999999999 566889999999999887       7999999999999999999999


Q ss_pred             EeeeCCCCCCCc
Q psy12376         74 VPVLGKHTKSKP   85 (89)
Q Consensus        74 ~~~l~~h~~~~~   85 (89)
                      ...+.+|+..++
T Consensus       281 ~~~l~~hs~~is  292 (456)
T KOG0266|consen  281 VRKLKGHSDGIS  292 (456)
T ss_pred             EEeeeccCCceE
Confidence            999999998876

>KOG0272|consensus

Probab=99.73  E-value=1.1e-17  Score=113.02  Aligned_cols=86  Identities=16%  Similarity=0.164  Sum_probs=79.3

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      +|.++|..++|||+|.+||+|+.|++++|||.+..+.+..+.+|...|..        .+|+|||.|++++||..++.+.
T Consensus       343 gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~  422 (459)
T KOG0272|consen  343 GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP  422 (459)
T ss_pred             ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCccc
Confidence            57889999999999999999999999999999988888889999886653        7999999999999999999999


Q ss_pred             EeeeCCCCCCCcCC
Q psy12376         74 VPVLGKHTKSKPST   87 (89)
Q Consensus        74 ~~~l~~h~~~~~~~   87 (89)
                      ++.|.+|..+|.|.
T Consensus       423 ~ksLaGHe~kV~s~  436 (459)
T KOG0272|consen  423 LKSLAGHEGKVISL  436 (459)
T ss_pred             chhhcCCccceEEE
Confidence            99999999998764

>KOG0263|consensus

Probab=99.71  E-value=1.7e-17  Score=117.88  Aligned_cols=85  Identities=16%  Similarity=0.220  Sum_probs=79.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|-..+.|++|+|+..++|+|+.|.+|++||+.+|..++.+.||+++|.+       .+||+|+.|+.|.|||+.++..+
T Consensus       533 ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v  612 (707)
T KOG0263|consen  533 GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV  612 (707)
T ss_pred             ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch
Confidence            56677999999999999999999999999999999999999999999987       89999999999999999999999


Q ss_pred             eeeCCCCCCCcC
Q psy12376         75 PVLGKHTKSKPS   86 (89)
Q Consensus        75 ~~l~~h~~~~~~   86 (89)
                      ..+.+|++.+-|
T Consensus       613 ~~l~~Ht~ti~S  624 (707)
T KOG0263|consen  613 KQLKGHTGTIYS  624 (707)
T ss_pred             hhhhcccCceeE
Confidence            999999776544

>KOG0266|consensus

Probab=99.68  E-value=4.3e-16  Score=108.01  Aligned_cols=83  Identities=22%  Similarity=0.343  Sum_probs=75.8

Q ss_pred             CCcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCE-
Q psy12376          1 MNLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSK-   72 (89)
Q Consensus         1 ~~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~-   72 (89)
                      ++|...+++++|+|+|+.+++|+.|++|++||++++++++.+.+|...|.+       .+|++++.|+.|+|||+.++. 
T Consensus       243 ~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~  322 (456)
T KOG0266|consen  243 KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK  322 (456)
T ss_pred             cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence            378889999999999999999999999999999999999999999999886       899999999999999999888 


Q ss_pred             -EEeeeCCCCCC
Q psy12376         73 -RVPVLGKHTKS   83 (89)
Q Consensus        73 -~~~~l~~h~~~   83 (89)
                       +...+.++...
T Consensus       323 ~~~~~~~~~~~~  334 (456)
T KOG0266|consen  323 LCLKLLSGAENS  334 (456)
T ss_pred             eeeecccCCCCC
Confidence             56777777665

>KOG0271|consensus

Probab=99.68  E-value=1.4e-16  Score=107.08  Aligned_cols=84  Identities=17%  Similarity=0.207  Sum_probs=77.6

Q ss_pred             CCcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          1 MNLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         1 ~~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      ++|..-|..+.||||++++|+++=|..|++||.++|+.+..+.+|-.+|.-       ++|+|||.|.++.+|++++.+.
T Consensus       364 tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl  443 (480)
T KOG0271|consen  364 TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL  443 (480)
T ss_pred             hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee
Confidence            467788999999999999999999999999999999999999999887764       7999999999999999999999


Q ss_pred             EeeeCCCCCCC
Q psy12376         74 VPVLGKHTKSK   84 (89)
Q Consensus        74 ~~~l~~h~~~~   84 (89)
                      ..-|.+|...+
T Consensus       444 ~~DLpGh~DEV  454 (480)
T KOG0271|consen  444 KQDLPGHADEV  454 (480)
T ss_pred             cccCCCCCceE
Confidence            89999998764

>KOG0272|consensus

Probab=99.68  E-value=1.4e-16  Score=107.70  Aligned_cols=84  Identities=17%  Similarity=0.202  Sum_probs=78.4

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|...|.+++|.|||..+++|+-|..-+|||+++|+++-.+.+|.++|..       ..|||||.|++++|||++.....
T Consensus       301 GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l  380 (459)
T KOG0272|consen  301 GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL  380 (459)
T ss_pred             ccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccc
Confidence            57788999999999999999999999999999999999999999999887       68999999999999999988888


Q ss_pred             eeeCCCCCCCc
Q psy12376         75 PVLGKHTKSKP   85 (89)
Q Consensus        75 ~~l~~h~~~~~   85 (89)
                      ..+.+|++-|+
T Consensus       381 y~ipAH~nlVS  391 (459)
T KOG0272|consen  381 YTIPAHSNLVS  391 (459)
T ss_pred             eecccccchhh
Confidence            89999998765

>PTZ00421 coronin; Provisional

Probab=99.66  E-value=2e-15  Score=105.64  Aligned_cols=85  Identities=20%  Similarity=0.131  Sum_probs=73.4

Q ss_pred             CcCCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC-------eEeeEecCCcceeec--------cEEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMTS-------KRVPVLGKHTNTIVG--------QVLAIGTARGNLTV   65 (89)
Q Consensus         2 ~~~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~~-------~~~~~~~~h~~~i~~--------~~las~s~d~~v~i   65 (89)
                      +|.+.|++++|+| ++++||+|+.||+|++||+.++       +.+..+.+|...|.+        ++|++|+.|++|+|
T Consensus        73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI  152 (493)
T PTZ00421         73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV  152 (493)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence            5778899999999 8899999999999999998764       245678899888876        58999999999999


Q ss_pred             EeCCCCEEEeeeCCCCCCCcC
Q psy12376         66 YNHMTSKRVPVLGKHTKSKPS   86 (89)
Q Consensus        66 wd~~~~~~~~~l~~h~~~~~~   86 (89)
                      ||+++++....+..|...+.+
T Consensus       153 WDl~tg~~~~~l~~h~~~V~s  173 (493)
T PTZ00421        153 WDVERGKAVEVIKCHSDQITS  173 (493)
T ss_pred             EECCCCeEEEEEcCCCCceEE
Confidence            999999888888888876543

>KOG0285|consensus

Probab=99.63  E-value=2.9e-15  Score=100.32  Aligned_cols=86  Identities=21%  Similarity=0.262  Sum_probs=72.5

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCccee--------------------------------
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTI--------------------------------   49 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i--------------------------------   49 (89)
                      +|.++|.|+++.|-.++|++|+.|+++.|||+.+|+....+.+|...+                                
T Consensus       149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvI  228 (460)
T KOG0285|consen  149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVI  228 (460)
T ss_pred             hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhH
Confidence            577899999999999999999999999999999998766665554322                                


Q ss_pred             ----------ec-------cEEEEEeCCCCEEEEeCCCCEEEeeeCCCCCCCcCC
Q psy12376         50 ----------VG-------QVLAIGTARGNLTVYNHMTSKRVPVLGKHTKSKPST   87 (89)
Q Consensus        50 ----------~~-------~~las~s~d~~v~iwd~~~~~~~~~l~~h~~~~~~~   87 (89)
                                .|       ..|++|+.|.+++|||+++...+..|.+|...+.++
T Consensus       229 R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V  283 (460)
T KOG0285|consen  229 RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASV  283 (460)
T ss_pred             HHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeE
Confidence                      22       678999999999999999999999999999887654

>PTZ00421 coronin; Provisional

Probab=99.62  E-value=1.1e-14  Score=102.06  Aligned_cols=82  Identities=17%  Similarity=0.202  Sum_probs=73.3

Q ss_pred             CcCCcEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          2 NLRYYIFLLQTSQVG-QVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         2 ~~~~~i~~~~~spdg-~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      +|...|.+++|+|++ .+|++++.|+.|+|||+.+++.+..+.+|...|.+       ++|++++.|+.|+|||+++++.
T Consensus       123 gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~  202 (493)
T PTZ00421        123 GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI  202 (493)
T ss_pred             CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE
Confidence            467789999999986 69999999999999999999988889999988876       7899999999999999999988


Q ss_pred             EeeeCCCCCC
Q psy12376         74 VPVLGKHTKS   83 (89)
Q Consensus        74 ~~~l~~h~~~   83 (89)
                      +..+.+|...
T Consensus       203 v~tl~~H~~~  212 (493)
T PTZ00421        203 VSSVEAHASA  212 (493)
T ss_pred             EEEEecCCCC
Confidence            8888888754

>KOG0319|consensus

Probab=99.59  E-value=6.5e-15  Score=104.80  Aligned_cols=83  Identities=17%  Similarity=0.203  Sum_probs=77.7

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|+..++++.|+|..+.+|+++.|++|+||.+.++.++..+.||...|.-       ++|+||+.||-++|||++++.++
T Consensus       503 GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~  582 (775)
T KOG0319|consen  503 GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE  582 (775)
T ss_pred             CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence            68888999999999999999999999999999999999999999886543       89999999999999999999999


Q ss_pred             eeeCCCCCCC
Q psy12376         75 PVLGKHTKSK   84 (89)
Q Consensus        75 ~~l~~h~~~~   84 (89)
                      ..+..|.+++
T Consensus       583 ~tlD~H~Drv  592 (775)
T KOG0319|consen  583 MTLDAHNDRV  592 (775)
T ss_pred             hhhhhcccee
Confidence            9999999874

>KOG0263|consensus

Probab=99.58  E-value=4e-15  Score=105.95  Aligned_cols=85  Identities=12%  Similarity=0.193  Sum_probs=79.7

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|..+|+.++|+|-|-+||+++.|++.++|.....+.++.+.+|.+-+.|       +|+|+||.|.+|++||+.+|..+
T Consensus       491 GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V  570 (707)
T KOG0263|consen  491 GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV  570 (707)
T ss_pred             CCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEE
Confidence            57789999999999999999999999999999988899999999998887       89999999999999999999999


Q ss_pred             eeeCCCCCCCcC
Q psy12376         75 PVLGKHTKSKPS   86 (89)
Q Consensus        75 ~~l~~h~~~~~~   86 (89)
                      ..+-+|..++.+
T Consensus       571 RiF~GH~~~V~a  582 (707)
T KOG0263|consen  571 RIFTGHKGPVTA  582 (707)
T ss_pred             EEecCCCCceEE
Confidence            999999988754

>KOG0265|consensus

Probab=99.58  E-value=2.1e-14  Score=94.16  Aligned_cols=86  Identities=16%  Similarity=0.183  Sum_probs=75.8

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMT-SKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~-~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      +|++.|+.+.|+|+|.+||+|+.|..|.+|+... -+-...+.+|++.|..       +.++++|.|.+|+.||.++|++
T Consensus        45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~  124 (338)
T KOG0265|consen   45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR  124 (338)
T ss_pred             CCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccccee
Confidence            5788899999999999999999999999999764 2334567799999887       8999999999999999999999


Q ss_pred             EeeeCCCCCCCcCC
Q psy12376         74 VPVLGKHTKSKPST   87 (89)
Q Consensus        74 ~~~l~~h~~~~~~~   87 (89)
                      ...+..|.+=+++.
T Consensus       125 ~rk~k~h~~~vNs~  138 (338)
T KOG0265|consen  125 IRKHKGHTSFVNSL  138 (338)
T ss_pred             eehhccccceeeec
Confidence            99999998776654

>KOG0273|consensus

Probab=99.58  E-value=1.1e-14  Score=99.84  Aligned_cols=87  Identities=20%  Similarity=0.227  Sum_probs=78.1

Q ss_pred             CCcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec----------------cEEEEEeCCCCEE
Q psy12376          1 MNLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG----------------QVLAIGTARGNLT   64 (89)
Q Consensus         1 ~~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~----------------~~las~s~d~~v~   64 (89)
                      ++|..+|.++.|.|.|..|+++++|++++||++........+++|...|..                ..+++++.|++|+
T Consensus       356 ~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~  435 (524)
T KOG0273|consen  356 IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVK  435 (524)
T ss_pred             ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEE
Confidence            468899999999999999999999999999999888888889999854443                6899999999999


Q ss_pred             EEeCCCCEEEeeeCCCCCCCcCC
Q psy12376         65 VYNHMTSKRVPVLGKHTKSKPST   87 (89)
Q Consensus        65 iwd~~~~~~~~~l~~h~~~~~~~   87 (89)
                      +||+..+..++.+-+|+.+|.+.
T Consensus       436 lwdv~~gv~i~~f~kH~~pVysv  458 (524)
T KOG0273|consen  436 LWDVESGVPIHTLMKHQEPVYSV  458 (524)
T ss_pred             EEEccCCceeEeeccCCCceEEE
Confidence            99999999999999999987653

>KOG0286|consensus

Probab=99.57  E-value=3.5e-14  Score=92.96  Aligned_cols=86  Identities=12%  Similarity=0.173  Sum_probs=79.0

Q ss_pred             CCcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          1 MNLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         1 ~~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~~~   72 (89)
                      ++|+..++|+.|-+| .+|++++.|.+..+||+.+|+.+..+.+|.+-|.+        +.|++|+.|++.+|||++.+.
T Consensus       142 ~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~  220 (343)
T KOG0286|consen  142 AGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ  220 (343)
T ss_pred             cCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc
Confidence            368888999999986 58899999999999999999999999999998776        899999999999999999999


Q ss_pred             EEeeeCCCCCCCcCC
Q psy12376         73 RVPVLGKHTKSKPST   87 (89)
Q Consensus        73 ~~~~l~~h~~~~~~~   87 (89)
                      ..+.+.+|...++++
T Consensus       221 c~qtF~ghesDINsv  235 (343)
T KOG0286|consen  221 CVQTFEGHESDINSV  235 (343)
T ss_pred             eeEeecccccccceE
Confidence            999999999888764

>KOG0295|consensus

Probab=99.55  E-value=6.8e-14  Score=93.58  Aligned_cols=84  Identities=17%  Similarity=0.173  Sum_probs=74.2

Q ss_pred             CcCCcEEEEEEccC---------------CCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeC
Q psy12376          2 NLRYYIFLLQTSQV---------------GQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTA   59 (89)
Q Consensus         2 ~~~~~i~~~~~spd---------------g~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~   59 (89)
                      .|..++.|++|-|.               |+++++++.|++|++||+.+|+++..+.+|...|+.       +||+|+.+
T Consensus       275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD  354 (406)
T KOG0295|consen  275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD  354 (406)
T ss_pred             ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEec
Confidence            35667888888764               258999999999999999999999999999999887       89999999


Q ss_pred             CCCEEEEeCCCCEEEeeeCCCCCCCc
Q psy12376         60 RGNLTVYNHMTSKRVPVLGKHTKSKP   85 (89)
Q Consensus        60 d~~v~iwd~~~~~~~~~l~~h~~~~~   85 (89)
                      |+++++||++.+++++.+..|+-=+.
T Consensus       355 Dktlrvwdl~~~~cmk~~~ah~hfvt  380 (406)
T KOG0295|consen  355 DKTLRVWDLKNLQCMKTLEAHEHFVT  380 (406)
T ss_pred             CCcEEEEEeccceeeeccCCCcceeE
Confidence            99999999999999999998875443

>KOG0291|consensus

Probab=99.55  E-value=6.5e-14  Score=100.31  Aligned_cols=78  Identities=19%  Similarity=0.273  Sum_probs=70.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|-+.++++++||||+++|+|+.||+|+|||.++|-+..++..|+..+..       +.+++.+.||+|+.||+......
T Consensus       348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf  427 (893)
T KOG0291|consen  348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF  427 (893)
T ss_pred             ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee
Confidence            46678999999999999999999999999999999999999999998876       78999999999999999877766


Q ss_pred             eeeCC
Q psy12376         75 PVLGK   79 (89)
Q Consensus        75 ~~l~~   79 (89)
                      .++-.
T Consensus       428 RTft~  432 (893)
T KOG0291|consen  428 RTFTS  432 (893)
T ss_pred             eeecC
Confidence            66543

>KOG0286|consensus

Probab=99.54  E-value=8.1e-14  Score=91.27  Aligned_cols=85  Identities=18%  Similarity=0.241  Sum_probs=68.6

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE-------------------------------------------
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR-------------------------------------------   38 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~-------------------------------------------   38 (89)
                      +|..+|+++.|++|++.|++++.||.+.|||..+...                                           
T Consensus        53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~  132 (343)
T KOG0286|consen   53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE  132 (343)
T ss_pred             ccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccc
Confidence            4667788888888888888888888888888765322                                           


Q ss_pred             -----eeEecCCcceeec------cEEEEEeCCCCEEEEeCCCCEEEeeeCCCCCCCcC
Q psy12376         39 -----VPVLGKHTNTIVG------QVLAIGTARGNLTVYNHMTSKRVPVLGKHTKSKPS   86 (89)
Q Consensus        39 -----~~~~~~h~~~i~~------~~las~s~d~~v~iwd~~~~~~~~~l~~h~~~~~~   86 (89)
                           .+.+.+|.+.+.|      ..|+++|.|.+..+||++++++...+.+|+..+.+
T Consensus       133 g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~s  191 (343)
T KOG0286|consen  133 GNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMS  191 (343)
T ss_pred             ccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEE
Confidence                 2335677777766      78999999999999999999999999999987643

>KOG0316|consensus

Probab=99.54  E-value=5.6e-14  Score=90.09  Aligned_cols=85  Identities=9%  Similarity=0.073  Sum_probs=78.9

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +++.+|..+.|.-||++.++++.|.+|++|+.-.|..++.+.+|...|..       ..|++|+.|..+.+||+.+|++.
T Consensus        15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~   94 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVD   94 (307)
T ss_pred             ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeee
Confidence            35678999999999999999999999999999999999999999998886       78999999999999999999999


Q ss_pred             eeeCCCCCCCcC
Q psy12376         75 PVLGKHTKSKPS   86 (89)
Q Consensus        75 ~~l~~h~~~~~~   86 (89)
                      ..+++|...++-
T Consensus        95 Rr~rgH~aqVNt  106 (307)
T KOG0316|consen   95 RRFRGHLAQVNT  106 (307)
T ss_pred             eecccccceeeE
Confidence            999999988764

>KOG0319|consensus

Probab=99.54  E-value=4.1e-14  Score=100.82  Aligned_cols=82  Identities=16%  Similarity=0.187  Sum_probs=77.4

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      |...|.|++.+|+.+.+|+|+.|.+.+||+..+++....+.+|+..|.|       +.+||+|.|++|+||.+.+..+++
T Consensus       462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk  541 (775)
T KOG0319|consen  462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK  541 (775)
T ss_pred             hcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeee
Confidence            5667999999999999999999999999999999999999999999988       689999999999999999999999


Q ss_pred             eeCCCCCCC
Q psy12376         76 VLGKHTKSK   84 (89)
Q Consensus        76 ~l~~h~~~~   84 (89)
                      ++.+|+..+
T Consensus       542 T~eGH~~aV  550 (775)
T KOG0319|consen  542 TFEGHTSAV  550 (775)
T ss_pred             eecCcccee
Confidence            999999765

>KOG0265|consensus

Probab=99.53  E-value=5.2e-14  Score=92.31  Aligned_cols=76  Identities=14%  Similarity=0.209  Sum_probs=69.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      +|...|..+.|.+|+.++++++.|.+++.||+++|+.++++++|.+.+++        .++.|++.|+++++||++....
T Consensus        88 gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~  167 (338)
T KOG0265|consen   88 GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA  167 (338)
T ss_pred             cccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch
Confidence            47788999999999999999999999999999999999999999998876        7999999999999999997666


Q ss_pred             Eeee
Q psy12376         74 VPVL   77 (89)
Q Consensus        74 ~~~l   77 (89)
                      ++++
T Consensus       168 ~~t~  171 (338)
T KOG0265|consen  168 IKTF  171 (338)
T ss_pred             hhcc
Confidence            5554

>KOG0315|consensus

Probab=99.52  E-value=1.9e-13  Score=88.16  Aligned_cols=81  Identities=17%  Similarity=0.119  Sum_probs=70.4

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-eEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTS-KRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~-~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      |...+..+.+|||+++||+++.|.+++||+..+. +.-..+++|+..+..       .||++|+.|+.+++|++..++.+
T Consensus       214 h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v  293 (311)
T KOG0315|consen  214 HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV  293 (311)
T ss_pred             ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence            4456899999999999999999999999999886 555677899988765       89999999999999999999888


Q ss_pred             eeeCCCCCC
Q psy12376         75 PVLGKHTKS   83 (89)
Q Consensus        75 ~~l~~h~~~   83 (89)
                      ..-++|-+.
T Consensus       294 ~qy~gh~K~  302 (311)
T KOG0315|consen  294 RQYQGHHKA  302 (311)
T ss_pred             eecCCcccc
Confidence            877777654

>KOG0281|consensus

Probab=99.52  E-value=8.6e-15  Score=98.03  Aligned_cols=83  Identities=13%  Similarity=0.220  Sum_probs=76.0

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----cEEEEEeCCCCEEEEeCCCCEEEee
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----QVLAIGTARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----~~las~s~d~~v~iwd~~~~~~~~~   76 (89)
                      +|+..|..+.|+  .+++++++.|.+|++|++.+++.++.+.+|+..|-|     +++++||.|.+|++||++.|.++..
T Consensus       318 GHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRv  395 (499)
T KOG0281|consen  318 GHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRV  395 (499)
T ss_pred             hhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHH
Confidence            677888999985  469999999999999999999999999999999998     8999999999999999999999999


Q ss_pred             eCCCCCCCcC
Q psy12376         77 LGKHTKSKPS   86 (89)
Q Consensus        77 l~~h~~~~~~   86 (89)
                      |++|..-+.+
T Consensus       396 LeGHEeLvRc  405 (499)
T KOG0281|consen  396 LEGHEELVRC  405 (499)
T ss_pred             HhchHHhhhh
Confidence            9999876543

>PTZ00420 coronin; Provisional

Probab=99.51  E-value=3.5e-13  Score=95.71  Aligned_cols=82  Identities=7%  Similarity=0.097  Sum_probs=68.8

Q ss_pred             CcCCcEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          2 NLRYYIFLLQTSQVGQV-LAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~-la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      +|...|.+++|+|++.. ||+++.||.|++||+++++.+..+. |...|.+       .+|++++.|+.|+|||+++++.
T Consensus       123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~  201 (568)
T PTZ00420        123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI  201 (568)
T ss_pred             cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE
Confidence            36678999999999875 5788999999999999988766664 4455655       7899999999999999999998


Q ss_pred             EeeeCCCCCCC
Q psy12376         74 VPVLGKHTKSK   84 (89)
Q Consensus        74 ~~~l~~h~~~~   84 (89)
                      ...+.+|...+
T Consensus       202 i~tl~gH~g~~  212 (568)
T PTZ00420        202 ASSFHIHDGGK  212 (568)
T ss_pred             EEEEecccCCc
Confidence            88888998654

>PTZ00420 coronin; Provisional

Probab=99.51  E-value=3.4e-13  Score=95.78  Aligned_cols=77  Identities=16%  Similarity=0.170  Sum_probs=63.3

Q ss_pred             CcCCcEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCe--------EeeEecCCcceeec--------cEEEEEeCCCCEE
Q psy12376          2 NLRYYIFLLQTSQV-GQVLAIGTARGNLTVYNHMTSK--------RVPVLGKHTNTIVG--------QVLAIGTARGNLT   64 (89)
Q Consensus         2 ~~~~~i~~~~~spd-g~~la~g~~~g~v~iwd~~~~~--------~~~~~~~h~~~i~~--------~~las~s~d~~v~   64 (89)
                      +|.+.|.+++|+|+ +.+||+|+.||.|++||+.++.        .+..+.+|...|.+        .+|++++.|++|+
T Consensus        72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIr  151 (568)
T PTZ00420         72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVN  151 (568)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEE
Confidence            47788999999997 7899999999999999997542        23456789888876        3578999999999


Q ss_pred             EEeCCCCEEEeeeC
Q psy12376         65 VYNHMTSKRVPVLG   78 (89)
Q Consensus        65 iwd~~~~~~~~~l~   78 (89)
                      |||+++++....+.
T Consensus       152 IWDl~tg~~~~~i~  165 (568)
T PTZ00420        152 IWDIENEKRAFQIN  165 (568)
T ss_pred             EEECCCCcEEEEEe
Confidence            99999887655543

>KOG0285|consensus

Probab=99.51  E-value=1.2e-13  Score=92.59  Aligned_cols=85  Identities=21%  Similarity=0.290  Sum_probs=76.4

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|-..|+|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|..       ..+++||.|++|++||++.|+..
T Consensus       233 GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~  312 (460)
T KOG0285|consen  233 GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM  312 (460)
T ss_pred             cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee
Confidence            46677999999999999999999999999999999999999999987765       78999999999999999999988


Q ss_pred             eeeCCCCCCCcC
Q psy12376         75 PVLGKHTKSKPS   86 (89)
Q Consensus        75 ~~l~~h~~~~~~   86 (89)
                      .++-.|.++++.
T Consensus       313 ~tlt~hkksvra  324 (460)
T KOG0285|consen  313 ITLTHHKKSVRA  324 (460)
T ss_pred             EeeecccceeeE
Confidence            888887776653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.50  E-value=3.7e-13  Score=84.28  Aligned_cols=83  Identities=23%  Similarity=0.293  Sum_probs=70.7

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|+++|++++|+|++++|++++.+|.+.+|+..+++....+..|...+.+       +++++++.|+.|++||+.+++..
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~   86 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV   86 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce
Confidence            47889999999999999999999999999999988777778888777633       58999999999999999887666


Q ss_pred             eeeCCCCCCC
Q psy12376         75 PVLGKHTKSK   84 (89)
Q Consensus        75 ~~l~~h~~~~   84 (89)
                      ..+..|...+
T Consensus        87 ~~~~~~~~~i   96 (289)
T cd00200          87 RTLTGHTSYV   96 (289)
T ss_pred             EEEeccCCcE
Confidence            6676666443

>KOG0302|consensus

Probab=99.50  E-value=4.8e-14  Score=94.78  Aligned_cols=88  Identities=18%  Similarity=0.228  Sum_probs=69.8

Q ss_pred             CCcCCcEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEee--EecCCcceeec-------cEEEEEeCCCCEEEEeCCC
Q psy12376          1 MNLRYYIFLLQTSQVG-QVLAIGTARGNLTVYNHMTSKRVP--VLGKHTNTIVG-------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         1 ~~~~~~i~~~~~spdg-~~la~g~~~g~v~iwd~~~~~~~~--~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~   70 (89)
                      ++|...|..|+|||.- ..||+++-||.|+|||+|.+....  ....|.+-|+.       .+||+|++||++.|||++.
T Consensus       254 ~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~  333 (440)
T KOG0302|consen  254 TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQ  333 (440)
T ss_pred             cccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhh
Confidence            4688889999999954 599999999999999999873322  22568776654       7899999999999999975


Q ss_pred             ---CEEEeeeCCCCCCCcCCC
Q psy12376         71 ---SKRVPVLGKHTKSKPSTE   88 (89)
Q Consensus        71 ---~~~~~~l~~h~~~~~~~~   88 (89)
                         ++.+..+..|..++.|.+
T Consensus       334 ~~~~~pVA~fk~Hk~pItsie  354 (440)
T KOG0302|consen  334 FKSGQPVATFKYHKAPITSIE  354 (440)
T ss_pred             ccCCCcceeEEeccCCeeEEE
Confidence               455567778888776643

>KOG0274|consensus

Probab=99.50  E-value=2.4e-13  Score=96.09  Aligned_cols=87  Identities=17%  Similarity=0.188  Sum_probs=79.3

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----cEEEEEeCCCCEEEEeCCCCEEEee
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----QVLAIGTARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----~~las~s~d~~v~iwd~~~~~~~~~   76 (89)
                      +|.+.++++++..-+.+|++|+.|.++++||..+|++...+.+|...+.|     .++++||.|.+|++|++.++..+++
T Consensus       247 GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l  326 (537)
T KOG0274|consen  247 GHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNL  326 (537)
T ss_pred             CCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEE
Confidence            68889999999887789999999999999999999999999999999888     6788899999999999999999999


Q ss_pred             eCCCCCCCcCCC
Q psy12376         77 LGKHTKSKPSTE   88 (89)
Q Consensus        77 l~~h~~~~~~~~   88 (89)
                      +.+|...|.+++
T Consensus       327 ~~~h~~~V~~v~  338 (537)
T KOG0274|consen  327 LRGHTGPVNCVQ  338 (537)
T ss_pred             eccccccEEEEE
Confidence            998998887653

>KOG0279|consensus

Probab=99.50  E-value=1.7e-13  Score=89.18  Aligned_cols=74  Identities=12%  Similarity=0.211  Sum_probs=66.8

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|...|+.+..++||+|.++++.|+++++||..+|+..+.|.+|..-|.+       .++++||.|++|.+||+......
T Consensus        61 GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~  140 (315)
T KOG0279|consen   61 GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKY  140 (315)
T ss_pred             ccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEE
Confidence            46667999999999999999999999999999999999999999998877       79999999999999999865544


Q ss_pred             e
Q psy12376         75 P   75 (89)
Q Consensus        75 ~   75 (89)
                      .
T Consensus       141 t  141 (315)
T KOG0279|consen  141 T  141 (315)
T ss_pred             E
Confidence            4

>KOG0284|consensus

Probab=99.49  E-value=2.4e-14  Score=96.82  Aligned_cols=83  Identities=14%  Similarity=0.171  Sum_probs=75.8

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEee
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~   76 (89)
                      ...|++++|||....|+++++||.|+|||....+.-+.+.+|..-+.|       .++|+||.|+.|.+||.+++.++..
T Consensus       180 ~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~t  259 (464)
T KOG0284|consen  180 AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLAT  259 (464)
T ss_pred             hhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhh
Confidence            367999999998899999999999999999888777888999988887       7999999999999999999999999


Q ss_pred             eCCCCCCCcC
Q psy12376         77 LGKHTKSKPS   86 (89)
Q Consensus        77 l~~h~~~~~~   86 (89)
                      +-+|...|..
T Consensus       260 lh~HKntVl~  269 (464)
T KOG0284|consen  260 LHGHKNTVLA  269 (464)
T ss_pred             hhhccceEEE
Confidence            9999887654

>KOG0645|consensus

Probab=99.49  E-value=4.4e-13  Score=87.10  Aligned_cols=83  Identities=17%  Similarity=0.186  Sum_probs=71.8

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCC--CeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCC--
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMT--SKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMT--   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~--~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~--   70 (89)
                      .|+..|.+++|+|.|++||+++-|.++.||.-..  .+++..+.+|...|.|       ++||+||+|++|.||.+..  
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd  138 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD  138 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence            3667799999999999999999999999999764  4678899999999988       8999999999999999963  


Q ss_pred             -CEEEeeeCCCCCCC
Q psy12376         71 -SKRVPVLGKHTKSK   84 (89)
Q Consensus        71 -~~~~~~l~~h~~~~   84 (89)
                       -.+...|..|+.-+
T Consensus       139 Efec~aVL~~HtqDV  153 (312)
T KOG0645|consen  139 EFECIAVLQEHTQDV  153 (312)
T ss_pred             cEEEEeeeccccccc
Confidence             35667888888653

>KOG0292|consensus

Probab=99.48  E-value=1.3e-13  Score=100.39  Aligned_cols=86  Identities=13%  Similarity=0.107  Sum_probs=79.4

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      .|.++|..+.|+|++.+|++|++|-+|++|+..+.+++..+.+|-+-|+.       ..|.|+|+|.+|+|||-.++.++
T Consensus        49 eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~i  128 (1202)
T KOG0292|consen   49 EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCI  128 (1202)
T ss_pred             ccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceE
Confidence            47889999999999999999999999999999999999999999998886       78999999999999999999999


Q ss_pred             eeeCCCCCCCcCC
Q psy12376         75 PVLGKHTKSKPST   87 (89)
Q Consensus        75 ~~l~~h~~~~~~~   87 (89)
                      ..+-+|.-=+++.
T Consensus       129 avltGHnHYVMcA  141 (1202)
T KOG0292|consen  129 AVLTGHNHYVMCA  141 (1202)
T ss_pred             EEEecCceEEEee
Confidence            9999997666554

>KOG0318|consensus

Probab=99.48  E-value=2e-13  Score=94.71  Aligned_cols=86  Identities=22%  Similarity=0.235  Sum_probs=73.6

Q ss_pred             CCcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEec-CCcceeec-------cEEEEEeCCCCEEEEeCCC-C
Q psy12376          1 MNLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLG-KHTNTIVG-------QVLAIGTARGNLTVYNHMT-S   71 (89)
Q Consensus         1 ~~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~-~h~~~i~~-------~~las~s~d~~v~iwd~~~-~   71 (89)
                      +.|+.+|++++||||+.|||++...+++.+||..+.+...... -|..+|.|       .++|+||.|.+|.||+++. .
T Consensus       484 ~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~  563 (603)
T KOG0318|consen  484 LEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA  563 (603)
T ss_pred             ecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh
Confidence            3578899999999999999999999999999999887654444 49999998       8999999999999999964 4


Q ss_pred             EEEeeeCCCCCCCcC
Q psy12376         72 KRVPVLGKHTKSKPS   86 (89)
Q Consensus        72 ~~~~~l~~h~~~~~~   86 (89)
                      +.+...++|...++.
T Consensus       564 ~~i~iknAH~~gVn~  578 (603)
T KOG0318|consen  564 KHIIIKNAHLGGVNS  578 (603)
T ss_pred             hheEeccccccCcee
Confidence            556667899887664

>KOG0318|consensus

Probab=99.48  E-value=4.7e-13  Score=92.93  Aligned_cols=74  Identities=18%  Similarity=0.279  Sum_probs=68.1

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEec---CCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLG---KHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~---~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      .=|.|+.|||||++||+.+.||++.+||..+|+.+..+.   +|++.|.+       +.|+++|.|.+++|||+.+++++
T Consensus       191 kFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv  270 (603)
T KOG0318|consen  191 KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV  270 (603)
T ss_pred             cceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceE
Confidence            348999999999999999999999999999999999988   79998887       89999999999999999998888


Q ss_pred             eeeC
Q psy12376         75 PVLG   78 (89)
Q Consensus        75 ~~l~   78 (89)
                      .++.
T Consensus       271 ~t~~  274 (603)
T KOG0318|consen  271 STWP  274 (603)
T ss_pred             EEee
Confidence            7654

>KOG0273|consensus

Probab=99.47  E-value=3e-13  Score=92.81  Aligned_cols=82  Identities=22%  Similarity=0.291  Sum_probs=70.3

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE-----------------------------------------ee
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR-----------------------------------------VP   40 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~-----------------------------------------~~   40 (89)
                      .|+.+|.++.|+..|.||++++.||++.+||.-+|..                                         +.
T Consensus       274 ~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~  353 (524)
T KOG0273|consen  274 QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVK  353 (524)
T ss_pred             ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcce
Confidence            4789999999999999999999999999999977754                                         22


Q ss_pred             EecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEeeeCCCCCC
Q psy12376         41 VLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPVLGKHTKS   83 (89)
Q Consensus        41 ~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~l~~h~~~   83 (89)
                      .+.+|.++|.+       .+|+|+|+|++++||+.......+-|.+|++.
T Consensus       354 t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hske  403 (524)
T KOG0273|consen  354 TFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKE  403 (524)
T ss_pred             eeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccc
Confidence            35567777776       79999999999999999888888889999854

>KOG0279|consensus

Probab=99.47  E-value=3.7e-13  Score=87.67  Aligned_cols=83  Identities=8%  Similarity=0.093  Sum_probs=70.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecC--Ccceeec---------cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGK--HTNTIVG---------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~--h~~~i~~---------~~las~s~d~~v~iwd~~~   70 (89)
                      +|...+.+++|+||..++++|+.|.++.+||+-.+ +..++..  +.+.|.|         .+|+++|.|++|++||+++
T Consensus       103 GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~  181 (315)
T KOG0279|consen  103 GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN  181 (315)
T ss_pred             ecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC
Confidence            57778999999999999999999999999998754 4444433  3677777         6999999999999999999


Q ss_pred             CEEEeeeCCCCCCCc
Q psy12376         71 SKRVPVLGKHTKSKP   85 (89)
Q Consensus        71 ~~~~~~l~~h~~~~~   85 (89)
                      .+..+.+.+|+.-++
T Consensus       182 ~~l~~~~~gh~~~v~  196 (315)
T KOG0279|consen  182 CQLRTTFIGHSGYVN  196 (315)
T ss_pred             cchhhccccccccEE
Confidence            999888999987654

>KOG0276|consensus

Probab=99.46  E-value=6.7e-14  Score=98.82  Aligned_cols=86  Identities=15%  Similarity=0.148  Sum_probs=79.1

Q ss_pred             CcCCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec---------cEEEEEeCCCCEEEEeCCCC
Q psy12376          2 NLRYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG---------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         2 ~~~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~---------~~las~s~d~~v~iwd~~~~   71 (89)
                      +|...|.+++|.| |-+.+|+++-|++|++|...+.....++++|...|+|         .+|+||++|.++.|||..+.
T Consensus       138 GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk  217 (794)
T KOG0276|consen  138 GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK  217 (794)
T ss_pred             CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH
Confidence            5777799999999 6789999999999999999888888899999999998         69999999999999999999


Q ss_pred             EEEeeeCCCCCCCcCC
Q psy12376         72 KRVPVLGKHTKSKPST   87 (89)
Q Consensus        72 ~~~~~l~~h~~~~~~~   87 (89)
                      .++++|.+|+.-++++
T Consensus       218 ~CV~TLeGHt~Nvs~v  233 (794)
T KOG0276|consen  218 SCVQTLEGHTNNVSFV  233 (794)
T ss_pred             HHHHHhhcccccceEE
Confidence            9999999999888764

>KOG0308|consensus

Probab=99.46  E-value=3e-13  Score=95.67  Aligned_cols=83  Identities=17%  Similarity=0.293  Sum_probs=77.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +++++|++++-.+.|..|++|+..+.+++||.++++.+..+++|...|++       ..+.|+|.|++|++||+....++
T Consensus       169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl  248 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL  248 (735)
T ss_pred             CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccccee
Confidence            56788999999999999999999999999999999999999999998887       89999999999999999988999


Q ss_pred             eeeCCCCCCC
Q psy12376         75 PVLGKHTKSK   84 (89)
Q Consensus        75 ~~l~~h~~~~   84 (89)
                      +++..|...+
T Consensus       249 ~T~~vH~e~V  258 (735)
T KOG0308|consen  249 ATYIVHKEGV  258 (735)
T ss_pred             eeEEeccCce
Confidence            9999998763

>KOG0973|consensus

Probab=99.45  E-value=6.1e-13  Score=97.43  Aligned_cols=83  Identities=18%  Similarity=0.234  Sum_probs=72.1

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCC-------C-----------eEeeEecCCcceeec-------cEEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMT-------S-----------KRVPVLGKHTNTIVG-------QVLAI   56 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~-------~-----------~~~~~~~~h~~~i~~-------~~las   56 (89)
                      .|...+.|+.|||||++||+|++|..|.||+...       |           +.+..+.+|...|..       .+||+
T Consensus        67 ~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS  146 (942)
T KOG0973|consen   67 DHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVS  146 (942)
T ss_pred             cccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEE
Confidence            4677899999999999999999999999999772       1           245667788887766       89999


Q ss_pred             EeCCCCEEEEeCCCCEEEeeeCCCCCCC
Q psy12376         57 GTARGNLTVYNHMTSKRVPVLGKHTKSK   84 (89)
Q Consensus        57 ~s~d~~v~iwd~~~~~~~~~l~~h~~~~   84 (89)
                      +|.|++|.|||..+.++...+.+|...|
T Consensus       147 ~s~DnsViiwn~~tF~~~~vl~~H~s~V  174 (942)
T KOG0973|consen  147 VSLDNSVIIWNAKTFELLKVLRGHQSLV  174 (942)
T ss_pred             ecccceEEEEccccceeeeeeecccccc
Confidence            9999999999999999999999998654

>KOG0647|consensus

Probab=99.45  E-value=6.4e-13  Score=87.37  Aligned_cols=75  Identities=16%  Similarity=0.200  Sum_probs=66.4

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec---------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG---------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~---------~~las~s~d~~v~iwd~~~~~   72 (89)
                      .|..++.+++|+-||..+++|+.|+.+++||+.++ ++..+..|..+|.+         ..|++||.|++|+.||.+...
T Consensus        70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~  148 (347)
T KOG0647|consen   70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN  148 (347)
T ss_pred             ccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence            46788999999999999999999999999999998 56788889998876         578999999999999999766


Q ss_pred             EEeee
Q psy12376         73 RVPVL   77 (89)
Q Consensus        73 ~~~~l   77 (89)
                      .+..+
T Consensus       149 pv~t~  153 (347)
T KOG0647|consen  149 PVATL  153 (347)
T ss_pred             eeeee
Confidence            66554

>KOG0282|consensus

Probab=99.43  E-value=1.1e-13  Score=94.92  Aligned_cols=76  Identities=12%  Similarity=0.149  Sum_probs=70.3

Q ss_pred             CcCCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCC-CeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          2 NLRYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMT-SKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         2 ~~~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~-~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~   72 (89)
                      +|+..|+++.|.| .+..|++++.|+.|+||+.+. +++++.+.+|..+|++       ..|.|+|-|++|++||+++|+
T Consensus       212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~  291 (503)
T KOG0282|consen  212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ  291 (503)
T ss_pred             CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccce
Confidence            5788899999999 899999999999999999986 8899999999999887       789999999999999999999


Q ss_pred             EEeee
Q psy12376         73 RVPVL   77 (89)
Q Consensus        73 ~~~~l   77 (89)
                      +...+
T Consensus       292 ~~~~f  296 (503)
T KOG0282|consen  292 VLSRF  296 (503)
T ss_pred             EEEEE
Confidence            88764

>KOG0643|consensus

Probab=99.43  E-value=1.6e-12  Score=84.57  Aligned_cols=78  Identities=15%  Similarity=0.209  Sum_probs=73.0

Q ss_pred             CCcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          1 MNLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         1 ~~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      ++|..+++.+.|..+|..|.+++.|.+..+|-.-+|+.+..+.+|.+.|.|       +++++|+.|+++++||+.+|++
T Consensus         7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~   86 (327)
T KOG0643|consen    7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ   86 (327)
T ss_pred             ccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE
Confidence            478889999999999999999999999999998899999999999999998       8999999999999999999998


Q ss_pred             EeeeC
Q psy12376         74 VPVLG   78 (89)
Q Consensus        74 ~~~l~   78 (89)
                      +....
T Consensus        87 la~~k   91 (327)
T KOG0643|consen   87 LATWK   91 (327)
T ss_pred             EEEee
Confidence            87653

>KOG0275|consensus

Probab=99.43  E-value=4.3e-14  Score=94.21  Aligned_cols=82  Identities=24%  Similarity=0.280  Sum_probs=68.7

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEe--------cCCcceeec-------cEEEEEeCCCCEEEEeCC
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVL--------GKHTNTIVG-------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~--------~~h~~~i~~-------~~las~s~d~~v~iwd~~   69 (89)
                      ..+.|..|||||++|++|+.||-|.+||..+|+....+        .-|..+|.|       .++|+|+.||.|.+|.++
T Consensus       214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~  293 (508)
T KOG0275|consen  214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE  293 (508)
T ss_pred             cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence            45789999999999999999999999999998764322        235667777       799999999999999999


Q ss_pred             CCEEEeeeC-CCCCCCcC
Q psy12376         70 TSKRVPVLG-KHTKSKPS   86 (89)
Q Consensus        70 ~~~~~~~l~-~h~~~~~~   86 (89)
                      +|.++..+. +|++.+-+
T Consensus       294 tG~ClRrFdrAHtkGvt~  311 (508)
T KOG0275|consen  294 TGQCLRRFDRAHTKGVTC  311 (508)
T ss_pred             cchHHHHhhhhhccCeeE
Confidence            999988775 88877543

>KOG0316|consensus

Probab=99.43  E-value=5e-13  Score=85.80  Aligned_cols=80  Identities=14%  Similarity=0.154  Sum_probs=70.2

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcc---eeec------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTN---TIVG------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~---~i~~------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      ..+|+++.||+||++.++++-|+++++.|..+|+.+..+.+|+.   .+.|      ..+++||+||.|++||+.+..++
T Consensus       183 g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~  262 (307)
T KOG0316|consen  183 GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQI  262 (307)
T ss_pred             CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceee
Confidence            45799999999999999999999999999999999999999875   4555      79999999999999999988888


Q ss_pred             eeeCCCCCC
Q psy12376         75 PVLGKHTKS   83 (89)
Q Consensus        75 ~~l~~h~~~   83 (89)
                      ..+..|+..
T Consensus       263 sk~~~~~~v  271 (307)
T KOG0316|consen  263 SKLSVVSTV  271 (307)
T ss_pred             eeeccCCce
Confidence            777665543

>KOG0647|consensus

Probab=99.42  E-value=6.2e-13  Score=87.44  Aligned_cols=81  Identities=15%  Similarity=0.232  Sum_probs=66.3

Q ss_pred             CCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCC-CeEeeE-ecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          4 RYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMT-SKRVPV-LGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         4 ~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~-~~~~~~-~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      .|.|.+|+||| ...++++|++||+|++|++.. |..+.+ ...|.+++.+       ..+++|+.|+.+++||+.+++.
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~  106 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV  106 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence            46799999999 556778999999999999975 555443 3468888877       7999999999999999999855


Q ss_pred             EeeeCCCCCCCc
Q psy12376         74 VPVLGKHTKSKP   85 (89)
Q Consensus        74 ~~~l~~h~~~~~   85 (89)
                       ..++.|.+.+.
T Consensus       107 -~~v~~Hd~pvk  117 (347)
T KOG0647|consen  107 -SQVAAHDAPVK  117 (347)
T ss_pred             -eeeeeccccee
Confidence             56788887754

>KOG0277|consensus

Probab=99.42  E-value=1.1e-12  Score=84.85  Aligned_cols=81  Identities=10%  Similarity=0.258  Sum_probs=68.6

Q ss_pred             cCCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          3 LRYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         3 ~~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      |..+|.++.|++ .++.++++++||+|++|+..-.+.+.++.+|...|..        +.++++|.|++++|||++...+
T Consensus       103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk  182 (311)
T KOG0277|consen  103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK  182 (311)
T ss_pred             hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc
Confidence            667899999998 5678889999999999999888889999999998875        8999999999999999975433


Q ss_pred             EeeeCCCCCC
Q psy12376         74 VPVLGKHTKS   83 (89)
Q Consensus        74 ~~~l~~h~~~   83 (89)
                      ...+..|...
T Consensus       183 ~~~i~ah~~E  192 (311)
T KOG0277|consen  183 FMSIEAHNSE  192 (311)
T ss_pred             eeEEEeccce
Confidence            3337777743

>KOG0264|consensus

Probab=99.41  E-value=1.8e-12  Score=88.20  Aligned_cols=84  Identities=17%  Similarity=0.215  Sum_probs=68.0

Q ss_pred             CcCCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCC-CeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCC-
Q psy12376          2 NLRYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMT-SKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMT-   70 (89)
Q Consensus         2 ~~~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~-~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~-   70 (89)
                      .|..++.|++|+| ++..||+|+.|++|.+||.|+ .+.+..+.+|...|.+        ..|||++.|+.+.|||+.. 
T Consensus       270 ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i  349 (422)
T KOG0264|consen  270 AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI  349 (422)
T ss_pred             ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence            3677899999999 456889999999999999997 4567888999998877        8999999999999999953 


Q ss_pred             CEEE-------------eeeCCCCCCCc
Q psy12376         71 SKRV-------------PVLGKHTKSKP   85 (89)
Q Consensus        71 ~~~~-------------~~l~~h~~~~~   85 (89)
                      ++..             ..-+||+.+++
T Consensus       350 g~eq~~eda~dgppEllF~HgGH~~kV~  377 (422)
T KOG0264|consen  350 GEEQSPEDAEDGPPELLFIHGGHTAKVS  377 (422)
T ss_pred             ccccChhhhccCCcceeEEecCcccccc
Confidence            3322             23378887764

>KOG0289|consensus

Probab=99.41  E-value=9.6e-13  Score=89.81  Aligned_cols=72  Identities=15%  Similarity=0.237  Sum_probs=64.2

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      .+++.+|+|||..|++|+.||.|++||..++..+..|.+|.++|.+       -+||++.+|+.|.+||++--+..+++
T Consensus       349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~  427 (506)
T KOG0289|consen  349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI  427 (506)
T ss_pred             eeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee
Confidence            3899999999999999999999999999988888999999999987       68999999999999999855544443

>KOG0293|consensus

Probab=99.40  E-value=1.1e-12  Score=89.21  Aligned_cols=84  Identities=17%  Similarity=0.260  Sum_probs=75.8

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcc---eeec-------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTN---TIVG-------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~---~i~~-------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      ..+|++++.|.||++++..-.+.++++||....+.++++.||+.   .|++       .+++|||+|+.|+||+..+++.
T Consensus       395 ~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl  474 (519)
T KOG0293|consen  395 EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL  474 (519)
T ss_pred             cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce
Confidence            45799999999999999999999999999998888999999864   3443       7999999999999999999999


Q ss_pred             EeeeCCCCCCCcCC
Q psy12376         74 VPVLGKHTKSKPST   87 (89)
Q Consensus        74 ~~~l~~h~~~~~~~   87 (89)
                      +..|.+|++.++++
T Consensus       475 l~~LsGHs~~vNcV  488 (519)
T KOG0293|consen  475 LAVLSGHSKTVNCV  488 (519)
T ss_pred             eEeecCCcceeeEE
Confidence            99999999988765

>KOG0274|consensus

Probab=99.40  E-value=1.4e-12  Score=92.28  Aligned_cols=81  Identities=22%  Similarity=0.263  Sum_probs=68.9

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec------cEEEEEeCCCCEEEEeCCCC-EEEe
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG------QVLAIGTARGNLTVYNHMTS-KRVP   75 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~------~~las~s~d~~v~iwd~~~~-~~~~   75 (89)
                      |.++|.++..+  +.++++|+.||.|.+||+.+++++..+.+|..+|.+      +++.+|+.|++|++||+++. +++.
T Consensus       330 h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~  407 (537)
T KOG0274|consen  330 HTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIH  407 (537)
T ss_pred             ccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhh
Confidence            67788888887  678889999999999998888888888889888887      68888999988999999888 7888


Q ss_pred             eeCCCCCCCc
Q psy12376         76 VLGKHTKSKP   85 (89)
Q Consensus        76 ~l~~h~~~~~   85 (89)
                      ++.+|+..++
T Consensus       408 tl~~h~~~v~  417 (537)
T KOG0274|consen  408 TLQGHTSLVS  417 (537)
T ss_pred             hhcCCccccc
Confidence            8888887654

>KOG0281|consensus

Probab=99.40  E-value=9.8e-13  Score=88.31  Aligned_cols=85  Identities=15%  Similarity=0.212  Sum_probs=54.5

Q ss_pred             CCcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCccee-------------------------------
Q psy12376          1 MNLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTI-------------------------------   49 (89)
Q Consensus         1 ~~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i-------------------------------   49 (89)
                      ++|.+.|.|++|  |.+.|++|+.|.+|++||..+|+.+..+-.|...|                               
T Consensus       234 ~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it  311 (499)
T KOG0281|consen  234 TGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDIT  311 (499)
T ss_pred             hcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHH
Confidence            367777777777  44577888888888888887777644433332211                               


Q ss_pred             ------------ec-----cEEEEEeCCCCEEEEeCCCCEEEeeeCCCCCCCcCC
Q psy12376         50 ------------VG-----QVLAIGTARGNLTVYNHMTSKRVPVLGKHTKSKPST   87 (89)
Q Consensus        50 ------------~~-----~~las~s~d~~v~iwd~~~~~~~~~l~~h~~~~~~~   87 (89)
                                  +.     +|++++|.|.++++|+..+++.+.++.+|.+.+-+-
T Consensus       312 ~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIACl  366 (499)
T KOG0281|consen  312 LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACL  366 (499)
T ss_pred             HHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceeh
Confidence                        11     667777777777777777677666777776665443

>KOG0264|consensus

Probab=99.39  E-value=5.7e-13  Score=90.56  Aligned_cols=86  Identities=13%  Similarity=0.155  Sum_probs=72.2

Q ss_pred             CcCCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCC--CeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMT--SKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~--~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~   70 (89)
                      +|.+.|..++|+| +...|++.++|+.+.|||.|+  .+......+|...|.|        .+||+||.|++|.+||++.
T Consensus       225 ~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn  304 (422)
T KOG0264|consen  225 GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN  304 (422)
T ss_pred             cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence            4677899999999 456889999999999999994  4445566789999988        7999999999999999974


Q ss_pred             -CEEEeeeCCCCCCCcCC
Q psy12376         71 -SKRVPVLGKHTKSKPST   87 (89)
Q Consensus        71 -~~~~~~l~~h~~~~~~~   87 (89)
                       .+..+.+.+|...+..+
T Consensus       305 L~~~lh~~e~H~dev~~V  322 (422)
T KOG0264|consen  305 LNKPLHTFEGHEDEVFQV  322 (422)
T ss_pred             cccCceeccCCCcceEEE
Confidence             56778899999876544

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.39  E-value=4.5e-12  Score=92.71  Aligned_cols=84  Identities=17%  Similarity=0.243  Sum_probs=68.4

Q ss_pred             CcCCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          2 NLRYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         2 ~~~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~~~   72 (89)
                      +|.+.|++++|+| ++.+|++|+.||.|++||+++++.+..+..+ ..+.+        .+|++|+.|+.|++||++.+.
T Consensus       573 ~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~  651 (793)
T PLN00181        573 EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK  651 (793)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence            4677899999997 7899999999999999999998887777654 33433        689999999999999998654


Q ss_pred             -EEeeeCCCCCCCcC
Q psy12376         73 -RVPVLGKHTKSKPS   86 (89)
Q Consensus        73 -~~~~l~~h~~~~~~   86 (89)
                       ....+.+|...+.+
T Consensus       652 ~~~~~~~~h~~~V~~  666 (793)
T PLN00181        652 LPLCTMIGHSKTVSY  666 (793)
T ss_pred             ccceEecCCCCCEEE
Confidence             45667788876653

>KOG0283|consensus

Probab=99.38  E-value=1.1e-12  Score=94.04  Aligned_cols=76  Identities=17%  Similarity=0.233  Sum_probs=62.7

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCC--------------------------------C-------------
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMT--------------------------------S-------------   36 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~--------------------------------~-------------   36 (89)
                      .|.+.|+++.||+||+|||+|+.||.|+||.+..                                .             
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            3678899999999999999999999999999765                                0             


Q ss_pred             ---------------eEeeEecCCcceeec------cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         37 ---------------KRVPVLGKHTNTIVG------QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        37 ---------------~~~~~~~~h~~~i~~------~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                                     +.++.+.+|...|.+      ++|.|+|.|.+|++|++....+++.+
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F  406 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF  406 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE
Confidence                           002335567666665      89999999999999999988888765

>KOG0292|consensus

Probab=99.37  E-value=6.9e-12  Score=91.58  Aligned_cols=69  Identities=10%  Similarity=0.173  Sum_probs=65.7

Q ss_pred             CCcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCC
Q psy12376          1 MNLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         1 ~~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~   69 (89)
                      .+|-|.|..+.|++...+++++++|.+|+||+-.+++++..++||+.-|.|       .+++|||.|.+|+|||+.
T Consensus        90 ~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDis  165 (1202)
T KOG0292|consen   90 LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDIS  165 (1202)
T ss_pred             ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeec
Confidence            368889999999999999999999999999999999999999999999998       799999999999999995

>KOG0296|consensus

Probab=99.36  E-value=1.6e-11  Score=82.39  Aligned_cols=85  Identities=16%  Similarity=0.205  Sum_probs=69.7

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEec-CCccee------eccEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLG-KHTNTI------VGQVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~-~h~~~i------~~~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|++.|+++.||.||.+||+|.-+|.|+||+..+|.....+- .-....      ++.+|+.|+.||.+.+|.+..+...
T Consensus       104 gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~  183 (399)
T KOG0296|consen  104 GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC  183 (399)
T ss_pred             CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCccee
Confidence            689999999999999999999999999999999987666552 211111      1179999999999999999877777


Q ss_pred             eeeCCCCCCCcC
Q psy12376         75 PVLGKHTKSKPS   86 (89)
Q Consensus        75 ~~l~~h~~~~~~   86 (89)
                      +.+.+|..+..+
T Consensus       184 kv~~Gh~~~ct~  195 (399)
T KOG0296|consen  184 KVMSGHNSPCTC  195 (399)
T ss_pred             eEecCCCCCccc
Confidence            889999877554

>KOG0299|consensus

Probab=99.36  E-value=1e-12  Score=89.86  Aligned_cols=83  Identities=20%  Similarity=0.212  Sum_probs=75.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|...+.+++.||||++||+|..|..|.||+.++.+-+..+.+|.+.|.+       ..+.+++.|++|.+|+++....+
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v  279 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV  279 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH
Confidence            35567999999999999999999999999999999999999999999887       68999999999999999988888


Q ss_pred             eeeCCCCCCC
Q psy12376         75 PVLGKHTKSK   84 (89)
Q Consensus        75 ~~l~~h~~~~   84 (89)
                      .++-+|+..+
T Consensus       280 etlyGHqd~v  289 (479)
T KOG0299|consen  280 ETLYGHQDGV  289 (479)
T ss_pred             HHHhCCccce
Confidence            8888888764

>KOG0315|consensus

Probab=99.36  E-value=3.7e-12  Score=82.25  Aligned_cols=75  Identities=13%  Similarity=0.181  Sum_probs=62.6

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|+..|+++.|.-||+++++|++||+++|||++.-.+.+.+ .|..+|++       .-|++|..+|.|+|||+......
T Consensus        81 ~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~  159 (311)
T KOG0315|consen   81 GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT  159 (311)
T ss_pred             ccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence            35567999999999999999999999999999985444444 46688877       67999999999999999877665


Q ss_pred             eee
Q psy12376         75 PVL   77 (89)
Q Consensus        75 ~~l   77 (89)
                      +.+
T Consensus       160 ~~l  162 (311)
T KOG0315|consen  160 HEL  162 (311)
T ss_pred             ccc
Confidence            544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.36  E-value=2.3e-11  Score=76.14  Aligned_cols=82  Identities=21%  Similarity=0.238  Sum_probs=69.5

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      +...+..+.|+|++++|++++.+|.+.+||..+++.+..+..|...+.+       +++++++.|+.+.+||+++++...
T Consensus        50 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  129 (289)
T cd00200          50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT  129 (289)
T ss_pred             CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE
Confidence            4556889999999999999999999999999988788888888877766       578888789999999999888777


Q ss_pred             eeCCCCCCC
Q psy12376         76 VLGKHTKSK   84 (89)
Q Consensus        76 ~l~~h~~~~   84 (89)
                      .+..|...+
T Consensus       130 ~~~~~~~~i  138 (289)
T cd00200         130 TLRGHTDWV  138 (289)
T ss_pred             EeccCCCcE
Confidence            777776554

>KOG0276|consensus

Probab=99.36  E-value=4.4e-12  Score=89.80  Aligned_cols=85  Identities=9%  Similarity=0.077  Sum_probs=77.7

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMT-SKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~-~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      |+|.|.+++.+|...+++++++|-.|++||-.. ..+...+++|...|.+        +.||||+.|++|.||++.+...
T Consensus        96 H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~  175 (794)
T KOG0276|consen   96 HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP  175 (794)
T ss_pred             cccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC
Confidence            788999999999999999999999999999865 4567789999988876        8999999999999999999889


Q ss_pred             EeeeCCCCCCCcCC
Q psy12376         74 VPVLGKHTKSKPST   87 (89)
Q Consensus        74 ~~~l~~h~~~~~~~   87 (89)
                      ..++.+|.+.++++
T Consensus       176 nfTl~gHekGVN~V  189 (794)
T KOG0276|consen  176 NFTLEGHEKGVNCV  189 (794)
T ss_pred             ceeeeccccCcceE
Confidence            99999999999875

>KOG1407|consensus

Probab=99.36  E-value=2e-12  Score=83.84  Aligned_cols=76  Identities=12%  Similarity=0.087  Sum_probs=69.2

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      |+....|++|+|+|++||+|+.|..+-+||+..--+++.+..+..+|+.       ++||+||+|..|.|=++++|.++.
T Consensus       188 H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~  267 (313)
T KOG1407|consen  188 HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVW  267 (313)
T ss_pred             CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEE
Confidence            5667899999999999999999999999999988888999888888886       899999999999999999998877


Q ss_pred             eeC
Q psy12376         76 VLG   78 (89)
Q Consensus        76 ~l~   78 (89)
                      .+.
T Consensus       268 eI~  270 (313)
T KOG1407|consen  268 EIP  270 (313)
T ss_pred             Eee
Confidence            653

>KOG0306|consensus

Probab=99.36  E-value=3.2e-12  Score=91.80  Aligned_cols=87  Identities=20%  Similarity=0.204  Sum_probs=81.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      .+++.|.|+++||||++||++--|.++.||-+.+-+..-.+.||+-||.|       +++++||.|.+|.||=++=|.+-
T Consensus       506 el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH  585 (888)
T KOG0306|consen  506 ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH  585 (888)
T ss_pred             eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh
Confidence            45678999999999999999999999999999999888888999999998       89999999999999999889999


Q ss_pred             eeeCCCCCCCcCCC
Q psy12376         75 PVLGKHTKSKPSTE   88 (89)
Q Consensus        75 ~~l~~h~~~~~~~~   88 (89)
                      +.+-+|+.+++++|
T Consensus       586 KS~fAHdDSvm~V~  599 (888)
T KOG0306|consen  586 KSFFAHDDSVMSVQ  599 (888)
T ss_pred             hhhhcccCceeEEE
Confidence            99999999998875

>KOG0275|consensus

Probab=99.35  E-value=1.4e-13  Score=91.78  Aligned_cols=84  Identities=14%  Similarity=0.199  Sum_probs=76.7

Q ss_pred             CCcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEec-CCcceeec-------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          1 MNLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLG-KHTNTIVG-------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         1 ~~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~-~h~~~i~~-------~~las~s~d~~v~iwd~~~~~   72 (89)
                      |-+.+++.|+.||.|.++||+|+.||.|++|.+.+|.+++.+. .|...|.|       ..+.++|.|.+++|--+++|+
T Consensus       260 MMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK  339 (508)
T KOG0275|consen  260 MMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK  339 (508)
T ss_pred             eecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch
Confidence            3467789999999999999999999999999999999999886 79998888       689999999999999999999


Q ss_pred             EEeeeCCCCCCC
Q psy12376         73 RVPVLGKHTKSK   84 (89)
Q Consensus        73 ~~~~l~~h~~~~   84 (89)
                      ..+.+.+|+.-+
T Consensus       340 ~LKEfrGHsSyv  351 (508)
T KOG0275|consen  340 CLKEFRGHSSYV  351 (508)
T ss_pred             hHHHhcCccccc
Confidence            999999998644

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.34  E-value=2.1e-11  Score=89.26  Aligned_cols=77  Identities=14%  Similarity=0.222  Sum_probs=66.6

Q ss_pred             CCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          4 RYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         4 ~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      ...+.+++|+| ++.+||+++.||.|++||..+++.+..+.+|...|.+        .+|++|+.|++|++||++++...
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~  611 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI  611 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence            34688999997 5789999999999999999999988999999998876        58999999999999999988777


Q ss_pred             eeeCCC
Q psy12376         75 PVLGKH   80 (89)
Q Consensus        75 ~~l~~h   80 (89)
                      ..+..+
T Consensus       612 ~~~~~~  617 (793)
T PLN00181        612 GTIKTK  617 (793)
T ss_pred             EEEecC
Confidence            665443

>KOG0296|consensus

Probab=99.33  E-value=2.3e-11  Score=81.60  Aligned_cols=73  Identities=16%  Similarity=0.250  Sum_probs=68.1

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      .|.-+.|+|-+..|++|+.||.+-+|.+.++.....+.+|+.+..|       +.++++..|++|++||+.+++.++.+.
T Consensus       150 dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  150 DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT  229 (399)
T ss_pred             ceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEec
Confidence            4788999999999999999999999999987788899999999888       899999999999999999999988876

>KOG0294|consensus

Probab=99.33  E-value=9.6e-12  Score=82.28  Aligned_cols=81  Identities=19%  Similarity=0.276  Sum_probs=73.4

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec---------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG---------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~---------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      |..+|++++.  +|.++|+|+.|-+|+|||++..+.+..+-.|.+.|+|         +.|.+|++||.|.+|++.....
T Consensus        42 H~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~  119 (362)
T KOG0294|consen   42 HAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWEL  119 (362)
T ss_pred             cccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEE
Confidence            5677999998  6799999999999999999998888888889999988         4899999999999999999999


Q ss_pred             EeeeCCCCCCCc
Q psy12376         74 VPVLGKHTKSKP   85 (89)
Q Consensus        74 ~~~l~~h~~~~~   85 (89)
                      ++.+.+|...|.
T Consensus       120 ~~slK~H~~~Vt  131 (362)
T KOG0294|consen  120 LKSLKAHKGQVT  131 (362)
T ss_pred             eeeecccccccc
Confidence            999999998764

>KOG0284|consensus

Probab=99.32  E-value=8.9e-13  Score=89.36  Aligned_cols=85  Identities=16%  Similarity=0.213  Sum_probs=74.7

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      |.-.+.+++|+|..-.+|+|++|..|++||.++|.++..+.+|+..|..       ++|+++|.|..++++|+++-+-+.
T Consensus       221 HgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~  300 (464)
T KOG0284|consen  221 HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF  300 (464)
T ss_pred             CCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH
Confidence            4445899999999999999999999999999999999999999998887       899999999999999998655666


Q ss_pred             eeCCCCCCCcCC
Q psy12376         76 VLGKHTKSKPST   87 (89)
Q Consensus        76 ~l~~h~~~~~~~   87 (89)
                      ...+|.+.+.+.
T Consensus       301 ~~r~Hkkdv~~~  312 (464)
T KOG0284|consen  301 TYRGHKKDVTSL  312 (464)
T ss_pred             Hhhcchhhheee
Confidence            778888776553

>KOG0295|consensus

Probab=99.32  E-value=9.1e-12  Score=83.53  Aligned_cols=85  Identities=18%  Similarity=0.221  Sum_probs=75.9

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec----------------------cEEEEEeC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG----------------------QVLAIGTA   59 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~----------------------~~las~s~   59 (89)
                      +|+..+.-++.+-||..+|+++.|.++++|-..++.+...+..|.-++.|                      .++++++.
T Consensus       233 ~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr  312 (406)
T KOG0295|consen  233 GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR  312 (406)
T ss_pred             CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence            46677889999999999999999999999999998777778888887776                      49999999


Q ss_pred             CCCEEEEeCCCCEEEeeeCCCCCCCcC
Q psy12376         60 RGNLTVYNHMTSKRVPVLGKHTKSKPS   86 (89)
Q Consensus        60 d~~v~iwd~~~~~~~~~l~~h~~~~~~   86 (89)
                      |++|++||+.++.++-+|.+|.+-++.
T Consensus       313 DktIk~wdv~tg~cL~tL~ghdnwVr~  339 (406)
T KOG0295|consen  313 DKTIKIWDVSTGMCLFTLVGHDNWVRG  339 (406)
T ss_pred             cceEEEEeccCCeEEEEEecccceeee
Confidence            999999999999999999999976653

>KOG0283|consensus

Probab=99.31  E-value=6.8e-12  Score=90.09  Aligned_cols=73  Identities=14%  Similarity=0.176  Sum_probs=66.1

Q ss_pred             CCcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          1 MNLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         1 ~~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~~~   72 (89)
                      .+|.+.|..|.||.++ +|++++.|.+|++|++...+++.+|. |.+.|+|        +||++|+.|+.++||++.+.+
T Consensus       366 ~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~  443 (712)
T KOG0283|consen  366 KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK  443 (712)
T ss_pred             hccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCe
Confidence            4788899999999984 99999999999999999888888885 9999998        899999999999999998777


Q ss_pred             EEe
Q psy12376         73 RVP   75 (89)
Q Consensus        73 ~~~   75 (89)
                      +..
T Consensus       444 Vv~  446 (712)
T KOG0283|consen  444 VVD  446 (712)
T ss_pred             eEe
Confidence            654

>KOG1446|consensus

Probab=99.31  E-value=3.8e-11  Score=79.06  Aligned_cols=74  Identities=15%  Similarity=0.224  Sum_probs=61.6

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE--------------------------------------------e
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR--------------------------------------------V   39 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~--------------------------------------------~   39 (89)
                      ...|.++.|+++|+++++++.|-.+++||..++++                                            +
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl   93 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL   93 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence            35799999999999999999999999999988865                                            3


Q ss_pred             eEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         40 PVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        40 ~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      +.+.||+..|..       ..+.|++.|++|++||++..++...+
T Consensus        94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l  138 (311)
T KOG1446|consen   94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL  138 (311)
T ss_pred             EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence            446677777665       78999999999999999876665554

>KOG0310|consensus

Probab=99.31  E-value=2.7e-11  Score=83.38  Aligned_cols=70  Identities=13%  Similarity=0.206  Sum_probs=62.0

Q ss_pred             CcCCcEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCCC
Q psy12376          2 NLRYYIFLLQTSQV-GQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         2 ~~~~~i~~~~~spd-g~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~~   71 (89)
                      .|+.++-.+.|+|+ +.+|++|++|+.+++||+.+......+.+|++-|+|        .+++|||.||.|++||.+..
T Consensus       108 ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~  186 (487)
T KOG0310|consen  108 AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL  186 (487)
T ss_pred             hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence            36778999999995 468899999999999999998876688999999998        58999999999999999865

>KOG1446|consensus

Probab=99.31  E-value=5.8e-11  Score=78.18  Aligned_cols=83  Identities=17%  Similarity=0.202  Sum_probs=68.8

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcc----eeec------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTN----TIVG------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~----~i~~------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      .+.+.+.|||||++++.++..+.+++.|+.+|..+..+..+..    ++.+      +++.+|+.||+|.+|+++++..+
T Consensus       188 ~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v  267 (311)
T KOG1446|consen  188 AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV  267 (311)
T ss_pred             cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence            4588999999999999999999999999999988777766543    2333      89999999999999999999888


Q ss_pred             eeeCC-CCCCCcCC
Q psy12376         75 PVLGK-HTKSKPST   87 (89)
Q Consensus        75 ~~l~~-h~~~~~~~   87 (89)
                      ..+.+ +...+++.
T Consensus       268 ~~~~~~~~~~~~~~  281 (311)
T KOG1446|consen  268 AVLRGPNGGPVSCV  281 (311)
T ss_pred             eEecCCCCCCcccc
Confidence            87765 55555543

>KOG0313|consensus

Probab=99.30  E-value=9.1e-12  Score=83.90  Aligned_cols=83  Identities=16%  Similarity=0.206  Sum_probs=70.5

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCe--E-eeEecCCcceeec--------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSK--R-VPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~--~-~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~~~   72 (89)
                      ...+.+++++|....||+|+.|..+++||.+++.  . ...+-+|+..|.+        .+|++|+.|+++++||+++.+
T Consensus       300 ~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  300 NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence            3468999999999999999999999999998743  2 4578899998876        789999999999999998755


Q ss_pred             -EEeeeCCCCCCCcC
Q psy12376         73 -RVPVLGKHTKSKPS   86 (89)
Q Consensus        73 -~~~~l~~h~~~~~~   86 (89)
                       .+-.+-+|..++.+
T Consensus       380 ~plydI~~h~DKvl~  394 (423)
T KOG0313|consen  380 APLYDIAGHNDKVLS  394 (423)
T ss_pred             CcceeeccCCceEEE
Confidence             77778888877654

>KOG0973|consensus

Probab=99.30  E-value=1.5e-11  Score=90.37  Aligned_cols=80  Identities=15%  Similarity=0.118  Sum_probs=71.0

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|...|..+.|+|++.+||+++.|..|.+||.++.+.+..+.+|.+.|-.       +|||+-++|++|.||++.+....
T Consensus       127 ~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~  206 (942)
T KOG0973|consen  127 GHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE  206 (942)
T ss_pred             cCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceee
Confidence            57788999999999999999999999999999999999999999887654       99999999999999998877777


Q ss_pred             eeeCCCC
Q psy12376         75 PVLGKHT   81 (89)
Q Consensus        75 ~~l~~h~   81 (89)
                      +.+-++-
T Consensus       207 k~It~pf  213 (942)
T KOG0973|consen  207 KSITKPF  213 (942)
T ss_pred             Eeeccch
Confidence            7665443

>KOG0649|consensus

Probab=99.30  E-value=2.9e-11  Score=78.12  Aligned_cols=74  Identities=14%  Similarity=0.164  Sum_probs=65.7

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      +|.++...|..+-+..++.|+.++-||..+|+..+.+.+|++-|.|       ..+.+|++||+++|||.++++.+..++
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie  195 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE  195 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence            4889999997766666668999999999999999999999998887       789999999999999999999988775


Q ss_pred             C
Q psy12376         79 K   79 (89)
Q Consensus        79 ~   79 (89)
                      .
T Consensus       196 ~  196 (325)
T KOG0649|consen  196 P  196 (325)
T ss_pred             c
Confidence            3

>KOG0305|consensus

Probab=99.30  E-value=9.1e-12  Score=86.81  Aligned_cols=80  Identities=19%  Similarity=0.311  Sum_probs=59.0

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecC-Ccceeec-------------------------------
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGK-HTNTIVG-------------------------------   51 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~-h~~~i~~-------------------------------   51 (89)
                      .+.|+++.|+++|.+||+|..+|.|.|||..+.+.++.+.+ |...|-|                               
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~  296 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVST  296 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhh
Confidence            46799999999999999999999999999887766666655 5554443                               


Q ss_pred             -----------------cEEEEEeCCCCEEEEeCCCCEEEeeeCCCCCC
Q psy12376         52 -----------------QVLAIGTARGNLTVYNHMTSKRVPVLGKHTKS   83 (89)
Q Consensus        52 -----------------~~las~s~d~~v~iwd~~~~~~~~~l~~h~~~   83 (89)
                                       +++|+|+.|+.+.|||..+......+-.|.+.
T Consensus       297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aA  345 (484)
T KOG0305|consen  297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAA  345 (484)
T ss_pred             hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecccee
Confidence                             56777777777777776555555555555543

>KOG0645|consensus

Probab=99.30  E-value=5.2e-11  Score=77.55  Aligned_cols=82  Identities=17%  Similarity=0.192  Sum_probs=68.9

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCC---eEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCC--
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTS---KRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHM--   69 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~---~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~--   69 (89)
                      +|..+|-|++||++|.+||+++.|..|=||.+..+   ++...+++|..-|.-       .+|+|+|.|++|++|.-.  
T Consensus       103 GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d  182 (312)
T KOG0645|consen  103 GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD  182 (312)
T ss_pred             ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCC
Confidence            57788999999999999999999999999999743   456778888764432       799999999999999986  


Q ss_pred             -CCEEEeeeCCCCCC
Q psy12376         70 -TSKRVPVLGKHTKS   83 (89)
Q Consensus        70 -~~~~~~~l~~h~~~   83 (89)
                       +-.+.+.+.+|.+.
T Consensus       183 ddW~c~~tl~g~~~T  197 (312)
T KOG0645|consen  183 DDWECVQTLDGHENT  197 (312)
T ss_pred             CCeeEEEEecCccce
Confidence             34678889999754

>KOG0267|consensus

Probab=99.29  E-value=4.4e-12  Score=90.70  Aligned_cols=88  Identities=15%  Similarity=0.175  Sum_probs=79.2

Q ss_pred             CCcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          1 MNLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         1 ~~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      ++|...+..+.|+|-|+|+|.|+.|+.+.+||++-..+...+.+|...+.+       .+++++++|.+++|||...|+.
T Consensus       109 tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~  188 (825)
T KOG0267|consen  109 TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL  188 (825)
T ss_pred             hccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccc
Confidence            378888999999999999999999999999999966688888888887776       7999999999999999999999


Q ss_pred             EeeeCCCCCCCcCCC
Q psy12376         74 VPVLGKHTKSKPSTE   88 (89)
Q Consensus        74 ~~~l~~h~~~~~~~~   88 (89)
                      .+.+..|..++.+.|
T Consensus       189 ~~ef~~~e~~v~sle  203 (825)
T KOG0267|consen  189 SKEFKSHEGKVQSLE  203 (825)
T ss_pred             ccccccccccccccc
Confidence            999999998887765

>KOG1273|consensus

Probab=99.29  E-value=1.1e-11  Score=82.22  Aligned_cols=71  Identities=20%  Similarity=0.313  Sum_probs=64.4

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      -.|+.|++-|.+||+|+.||.|.|||..+...-+.+.+|..+|.+       .+|.++|.|..+.+||+..|...+.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence            679999999999999999999999999998777888999999987       89999999999999999888766543

>KOG0306|consensus

Probab=99.28  E-value=2.4e-11  Score=87.37  Aligned_cols=82  Identities=15%  Similarity=0.200  Sum_probs=73.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|...|+.+.|+..|..||+|+.|+.|.+||+-....+..+.+|+..|..       +++++.+.|+.|++||+++..+.
T Consensus       105 gHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf  184 (888)
T KOG0306|consen  105 GHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCF  184 (888)
T ss_pred             ccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceee
Confidence            57888999999999999999999999999998766667789999987765       79999999999999999999998


Q ss_pred             eeeCCCCCC
Q psy12376         75 PVLGKHTKS   83 (89)
Q Consensus        75 ~~l~~h~~~   83 (89)
                      .+.-.|...
T Consensus       185 ~Thvd~r~E  193 (888)
T KOG0306|consen  185 ETHVDHRGE  193 (888)
T ss_pred             eEEecccce
Confidence            888777654

>KOG0293|consensus

Probab=99.27  E-value=1.6e-11  Score=83.73  Aligned_cols=77  Identities=16%  Similarity=0.121  Sum_probs=66.8

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCC-C--eEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMT-S--KRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~-~--~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~   71 (89)
                      .|.++|+.+.||++|++||+++.|.+..+|++.. +  +....+.+|..+|..       +|+++|+.|..+.+||+.+|
T Consensus       222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg  301 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG  301 (519)
T ss_pred             hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence            4788999999999999999999999999999743 3  346678899888765       89999999999999999999


Q ss_pred             EEEeeeC
Q psy12376         72 KRVPVLG   78 (89)
Q Consensus        72 ~~~~~l~   78 (89)
                      ...+..+
T Consensus       302 d~~~~y~  308 (519)
T KOG0293|consen  302 DLRHLYP  308 (519)
T ss_pred             hhhhhcc
Confidence            8877654

>KOG0641|consensus

Probab=99.27  E-value=4.4e-11  Score=76.88  Aligned_cols=76  Identities=20%  Similarity=0.291  Sum_probs=56.7

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCC--CCeE------------------------------------------
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHM--TSKR------------------------------------------   38 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~--~~~~------------------------------------------   38 (89)
                      |+..|+|.+|||+|+.||+|++|..|++.--.  +...                                          
T Consensus        88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~  167 (350)
T KOG0641|consen   88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI  167 (350)
T ss_pred             cCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence            57789999999999999999999988875432  2110                                          


Q ss_pred             --------eeEecCCcceeec------cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376         39 --------VPVLGKHTNTIVG------QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus        39 --------~~~~~~h~~~i~~------~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                              ...+.+|.+-|.+      -+|++|+.|.+|++||++-+.++.++.
T Consensus       168 tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~  221 (350)
T KOG0641|consen  168 TDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLD  221 (350)
T ss_pred             eecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeecc
Confidence                    1123344444444      689999999999999999888877764

>KOG0305|consensus

Probab=99.26  E-value=1.9e-11  Score=85.29  Aligned_cols=76  Identities=21%  Similarity=0.282  Sum_probs=67.6

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEE--eCCCCEEEEeCCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIG--TARGNLTVYNHMTS   71 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~--s~d~~v~iwd~~~~   71 (89)
                      +|+-.|..++|++|+.+||+|+.|+.+.|||....+.+..+..|+..|.+        .+||+|  +.|+.|++||+.++
T Consensus       299 ~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g  378 (484)
T KOG0305|consen  299 GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG  378 (484)
T ss_pred             cccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence            36778999999999999999999999999999877778888899988876        789988  67999999999998


Q ss_pred             EEEeee
Q psy12376         72 KRVPVL   77 (89)
Q Consensus        72 ~~~~~l   77 (89)
                      ..+..+
T Consensus       379 ~~i~~v  384 (484)
T KOG0305|consen  379 ARIDSV  384 (484)
T ss_pred             cEeccc
Confidence            887654

>KOG0277|consensus

Probab=99.26  E-value=5.4e-11  Score=77.08  Aligned_cols=81  Identities=17%  Similarity=0.245  Sum_probs=66.3

Q ss_pred             CcCCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCC-CeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCC-
Q psy12376          2 NLRYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMT-SKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMT-   70 (89)
Q Consensus         2 ~~~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~-~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~-   70 (89)
                      +|.+-|+..+||| ++..+|+.+.||.+++||.+. |+.+. +..|...|.|        +.+++|+.|+.|++||++. 
T Consensus       145 gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~  223 (311)
T KOG0277|consen  145 GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL  223 (311)
T ss_pred             CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhc
Confidence            4677799999999 678999999999999999975 66555 7889877766        7999999999999999974 


Q ss_pred             CEEEeeeCCCCCC
Q psy12376         71 SKRVPVLGKHTKS   83 (89)
Q Consensus        71 ~~~~~~l~~h~~~   83 (89)
                      ...+..+.+|.-.
T Consensus       224 r~pl~eL~gh~~A  236 (311)
T KOG0277|consen  224 RTPLFELNGHGLA  236 (311)
T ss_pred             cccceeecCCceE
Confidence            3445566777643

>KOG0303|consensus

Probab=99.24  E-value=1.3e-11  Score=83.61  Aligned_cols=82  Identities=16%  Similarity=0.136  Sum_probs=68.5

Q ss_pred             CcCCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCe-------EeeEecCCcceeec--------cEEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMTSK-------RVPVLGKHTNTIVG--------QVLAIGTARGNLTV   65 (89)
Q Consensus         2 ~~~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~~~-------~~~~~~~h~~~i~~--------~~las~s~d~~v~i   65 (89)
                      +|+.++..++|+| +.+.||+|+.|.+|.||++..+.       .+..+.+|+.+|--        +.|+|++.|++|.|
T Consensus        79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i  158 (472)
T KOG0303|consen   79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI  158 (472)
T ss_pred             CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence            6888999999999 55799999999999999986543       35567889887643        89999999999999


Q ss_pred             EeCCCCEEEeeeCCCCCCC
Q psy12376         66 YNHMTSKRVPVLGKHTKSK   84 (89)
Q Consensus        66 wd~~~~~~~~~l~~h~~~~   84 (89)
                      ||+.+|+.+-.+. |+.-+
T Consensus       159 Wnv~tgeali~l~-hpd~i  176 (472)
T KOG0303|consen  159 WNVGTGEALITLD-HPDMV  176 (472)
T ss_pred             EeccCCceeeecC-CCCeE
Confidence            9999998777666 87654

>KOG0310|consensus

Probab=99.23  E-value=1.8e-11  Score=84.26  Aligned_cols=84  Identities=17%  Similarity=0.240  Sum_probs=72.9

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      .++.++++.|-.||+.||+|...|.|++||+.+.-.++.+.+|+.++..        ..|++|++|+.+++||+.++...
T Consensus        67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~  146 (487)
T KOG0310|consen   67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQ  146 (487)
T ss_pred             hccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEE
Confidence            4577999999999999999999999999997665567888999988765        78999999999999999988876


Q ss_pred             eeeCCCCCCCcC
Q psy12376         75 PVLGKHTKSKPS   86 (89)
Q Consensus        75 ~~l~~h~~~~~~   86 (89)
                      ..+.+|+.-+.+
T Consensus       147 ~~l~~htDYVR~  158 (487)
T KOG0310|consen  147 AELSGHTDYVRC  158 (487)
T ss_pred             EEecCCcceeEe
Confidence            688899876543

>KOG0300|consensus

Probab=99.20  E-value=4.3e-11  Score=79.86  Aligned_cols=85  Identities=14%  Similarity=0.193  Sum_probs=75.6

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCC-CEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMT-SKR   73 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~-~~~   73 (89)
                      +|+..+.++.|-..|+.++++++|.+..+||..+|+.+..+.+|...+.-       +++++.|.|.+.++||.+. -..
T Consensus       270 gH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~s  349 (481)
T KOG0300|consen  270 GHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQS  349 (481)
T ss_pred             ccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcce
Confidence            57788999999999999999999999999999999999999999887653       7899999999999999974 356


Q ss_pred             EeeeCCCCCCCcC
Q psy12376         74 VPVLGKHTKSKPS   86 (89)
Q Consensus        74 ~~~l~~h~~~~~~   86 (89)
                      +..+++|+..+-|
T Consensus       350 V~VFQGHtdtVTS  362 (481)
T KOG0300|consen  350 VAVFQGHTDTVTS  362 (481)
T ss_pred             eeeecccccceeE
Confidence            6788999988654

>KOG0269|consensus

Probab=99.19  E-value=2.6e-11  Score=87.25  Aligned_cols=67  Identities=18%  Similarity=0.190  Sum_probs=59.4

Q ss_pred             CcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCC-CeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCC
Q psy12376          5 YYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMT-SKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         5 ~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~-~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~   71 (89)
                      +.|..+.|+| .+..|+++.+.|.+++||+|. .+...++..|.+++.|       .+|||||+|++|+|||..++
T Consensus       177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~  252 (839)
T KOG0269|consen  177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS  252 (839)
T ss_pred             hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence            4688999999 678999999999999999986 4556788899999998       79999999999999999754

>KOG1009|consensus

Probab=99.19  E-value=2.2e-10  Score=77.78  Aligned_cols=81  Identities=19%  Similarity=0.295  Sum_probs=67.6

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCC--------C--------CeEeeEecCCcceeec-------cEEEEEe
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHM--------T--------SKRVPVLGKHTNTIVG-------QVLAIGT   58 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~--------~--------~~~~~~~~~h~~~i~~-------~~las~s   58 (89)
                      .|...++++.|+|+|+.||+|+++|++.+|...        +        ......+.+|...|..       .++++++
T Consensus        63 ~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s  142 (434)
T KOG1009|consen   63 RHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGS  142 (434)
T ss_pred             CCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeee
Confidence            366679999999999999999999999999865        2        1223456677776655       8999999


Q ss_pred             CCCCEEEEeCCCCEEEeeeCCCCC
Q psy12376         59 ARGNLTVYNHMTSKRVPVLGKHTK   82 (89)
Q Consensus        59 ~d~~v~iwd~~~~~~~~~l~~h~~   82 (89)
                      -|+++++||+..|+....+..|..
T Consensus       143 ~dns~~l~Dv~~G~l~~~~~dh~~  166 (434)
T KOG1009|consen  143 VDNSVRLWDVHAGQLLAILDDHEH  166 (434)
T ss_pred             ccceEEEEEeccceeEeecccccc
Confidence            999999999999999999888764

>KOG0640|consensus

Probab=99.16  E-value=9.7e-11  Score=77.90  Aligned_cols=79  Identities=18%  Similarity=0.297  Sum_probs=66.7

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEe---cCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVL---GKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~---~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      .++.++.|+|.|+||++|++-..+++||+.+.++.-..   ..|++.|.+       ++.++||.||.|+|||--+++++
T Consensus       217 ~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv  296 (430)
T KOG0640|consen  217 EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCV  296 (430)
T ss_pred             ceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHH
Confidence            46899999999999999999999999999997764322   358888877       89999999999999999888888


Q ss_pred             eee-CCCCCC
Q psy12376         75 PVL-GKHTKS   83 (89)
Q Consensus        75 ~~l-~~h~~~   83 (89)
                      .++ .+|.+.
T Consensus       297 ~t~~~AH~gs  306 (430)
T KOG0640|consen  297 RTIGNAHGGS  306 (430)
T ss_pred             HHHHhhcCCc
Confidence            766 466654

>KOG0282|consensus

Probab=99.14  E-value=2.6e-11  Score=83.53  Aligned_cols=84  Identities=10%  Similarity=0.094  Sum_probs=70.8

Q ss_pred             CCcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          1 MNLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         1 ~~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~~~   72 (89)
                      |+|..+|..+.|+.+|..|++++-|+.+++||+.+|+++..+... ..+.|        +.|++|+.|+.|+-||+++++
T Consensus       255 ~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k  333 (503)
T KOG0282|consen  255 KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK  333 (503)
T ss_pred             hcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchH
Confidence            578889999999999999999999999999999999987776421 12223        799999999999999999999


Q ss_pred             EEeeeCCCCCCCc
Q psy12376         73 RVPVLGKHTKSKP   85 (89)
Q Consensus        73 ~~~~l~~h~~~~~   85 (89)
                      .++....|-..++
T Consensus       334 vvqeYd~hLg~i~  346 (503)
T KOG0282|consen  334 VVQEYDRHLGAIL  346 (503)
T ss_pred             HHHHHHhhhhhee
Confidence            8887777766543

>KOG2919|consensus

Probab=99.13  E-value=1.1e-10  Score=77.73  Aligned_cols=84  Identities=20%  Similarity=0.253  Sum_probs=65.8

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeC-CCcEEEEeCCC-CeEeeEecCCcc----eeec------cEEEEEeCCCCEEEEeCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTA-RGNLTVYNHMT-SKRVPVLGKHTN----TIVG------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~-~g~v~iwd~~~-~~~~~~~~~h~~----~i~~------~~las~s~d~~v~iwd~~   69 (89)
                      +|...|+.++|.+||+.|.+|+. +-.|..||++. +..+..++.|..    +|..      ++||+|+.||.|++||++
T Consensus       248 gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk  327 (406)
T KOG2919|consen  248 GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK  327 (406)
T ss_pred             ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence            46778999999999999999987 66999999986 445566666644    5554      899999999999999998


Q ss_pred             C-CEEEeeeCCCCCCCc
Q psy12376         70 T-SKRVPVLGKHTKSKP   85 (89)
Q Consensus        70 ~-~~~~~~l~~h~~~~~   85 (89)
                      + +.....++.|+..++
T Consensus       328 ~~gn~~sv~~~~sd~vN  344 (406)
T KOG2919|consen  328 DLGNEVSVTGNYSDTVN  344 (406)
T ss_pred             CCCCccccccccccccc
Confidence            6 565566666665443

>KOG0289|consensus

Probab=99.12  E-value=4.4e-10  Score=77.03  Aligned_cols=85  Identities=14%  Similarity=0.214  Sum_probs=72.1

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcc--eeec-------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTN--TIVG-------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~--~i~~-------~~las~s~d~~v~iwd~~~~~   72 (89)
                      .|..+|+.+..+|.|+||++++.||...+.|+++|+.+......+.  .+.+       .+|++|..|+.|+|||+.++.
T Consensus       301 ~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~  380 (506)
T KOG0289|consen  301 PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT  380 (506)
T ss_pred             cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc
Confidence            4678899999999999999999999999999999988776653222  2333       789999999999999999888


Q ss_pred             EEeeeCCCCCCCcC
Q psy12376         73 RVPVLGKHTKSKPS   86 (89)
Q Consensus        73 ~~~~l~~h~~~~~~   86 (89)
                      ....+++|+.++..
T Consensus       381 ~~a~Fpght~~vk~  394 (506)
T KOG0289|consen  381 NVAKFPGHTGPVKA  394 (506)
T ss_pred             ccccCCCCCCceeE
Confidence            88899999988653

>KOG0639|consensus

Probab=99.12  E-value=3.8e-11  Score=83.71  Aligned_cols=68  Identities=16%  Similarity=0.210  Sum_probs=62.5

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +++++.|||.+...+++.||.|.|||+.+...++.+++|.+...|       ..|=+|+-|++|+.||++++...
T Consensus       512 CyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql  586 (705)
T KOG0639|consen  512 CYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL  586 (705)
T ss_pred             hhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh
Confidence            678999999999999999999999999999999999999998877       68999999999999999887654

>KOG0301|consensus

Probab=99.12  E-value=1.7e-10  Score=82.35  Aligned_cols=79  Identities=10%  Similarity=0.212  Sum_probs=70.4

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      +|+.+|+++..-|++ .+++|+.|.+|++|..  ++.++.+.+|++.|+.      ..|+||+.||.|+.|++ +|+++.
T Consensus       138 gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~  213 (745)
T KOG0301|consen  138 GHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLL  213 (745)
T ss_pred             CcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceee
Confidence            688899999999998 8899999999999986  6788999999998887      58999999999999999 688888


Q ss_pred             eeCCCCCCC
Q psy12376         76 VLGKHTKSK   84 (89)
Q Consensus        76 ~l~~h~~~~   84 (89)
                      .+-+|++-+
T Consensus       214 ~~~ghtn~v  222 (745)
T KOG0301|consen  214 EMHGHTNFV  222 (745)
T ss_pred             eeeccceEE
Confidence            888888643

>KOG0640|consensus

Probab=99.11  E-value=2.2e-10  Score=76.25  Aligned_cols=76  Identities=11%  Similarity=0.247  Sum_probs=65.6

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEec-CCcce-eec-------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLG-KHTNT-IVG-------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~-~h~~~-i~~-------~~las~s~d~~v~iwd~~~~~   72 (89)
                      .|.+.|+++.+|+.|++.++++.||.|++||.-++++++.+. .|.+. |.+       +|+.+.+.|..|++|.+.++.
T Consensus       259 qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R  338 (430)
T KOG0640|consen  259 QHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR  338 (430)
T ss_pred             ccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence            467889999999999999999999999999999999988875 57653 433       899999999999999999887


Q ss_pred             EEeee
Q psy12376         73 RVPVL   77 (89)
Q Consensus        73 ~~~~l   77 (89)
                      .+...
T Consensus       339 ~l~~Y  343 (430)
T KOG0640|consen  339 MLKEY  343 (430)
T ss_pred             eEEEE
Confidence            66643

>KOG1408|consensus

Probab=99.11  E-value=6.9e-11  Score=85.18  Aligned_cols=83  Identities=29%  Similarity=0.335  Sum_probs=73.8

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec----------cEEEEEeCCCCEEEEeCCC-CE
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG----------QVLAIGTARGNLTVYNHMT-SK   72 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~----------~~las~s~d~~v~iwd~~~-~~   72 (89)
                      +..+.+++.||+|++||+|.--|+++||+....+....+..|...|.|          ++||+++.|.-|.|||+.. -.
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~  538 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD  538 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence            456899999999999999999999999999988888888999999998          8999999999999999964 46


Q ss_pred             EEeeeCCCCCCCcC
Q psy12376         73 RVPVLGKHTKSKPS   86 (89)
Q Consensus        73 ~~~~l~~h~~~~~~   86 (89)
                      .++++.+|+..+-+
T Consensus       539 l~qtld~HSssITs  552 (1080)
T KOG1408|consen  539 LVQTLDGHSSSITS  552 (1080)
T ss_pred             hhhhhcccccceeE
Confidence            77788899887654

>KOG0294|consensus

Probab=99.10  E-value=6.1e-10  Score=73.89  Aligned_cols=75  Identities=13%  Similarity=0.092  Sum_probs=66.0

Q ss_pred             CcCCcEEEEEEccCCC--EEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          2 NLRYYIFLLQTSQVGQ--VLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~--~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~   72 (89)
                      .|.+.|+++.|.+...  +|++|++||.|.+|+....+.+..+.+|++.|+.       ++..+.+.|+.++.||+-.|+
T Consensus        81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence            4678899999999875  9999999999999999999999999999998876       788888999999999997766


Q ss_pred             EEee
Q psy12376         73 RVPV   76 (89)
Q Consensus        73 ~~~~   76 (89)
                      .-..
T Consensus       161 ~a~v  164 (362)
T KOG0294|consen  161 VAFV  164 (362)
T ss_pred             ccee
Confidence            5443

>KOG0302|consensus

Probab=99.10  E-value=3.7e-10  Score=76.34  Aligned_cols=67  Identities=16%  Similarity=0.287  Sum_probs=59.6

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCC---CeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCC
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMT---SKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~---~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~   69 (89)
                      |...|..+.|+-.-.+||+|++||.+.|||+++   ++.+..+.-|+.+|.+        ..|+++|.|..|.|||+.
T Consensus       301 h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  301 HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            455689999999888999999999999999986   5567889899999998        688999999999999994

>KOG2096|consensus

Probab=99.09  E-value=7.6e-10  Score=73.83  Aligned_cols=35  Identities=11%  Similarity=0.057  Sum_probs=32.6

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTS   36 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~   36 (89)
                      +|.+.|++++||.||++||+.+.|+.|++|+.+..
T Consensus        84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF  118 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDF  118 (420)
T ss_pred             ccCCceeeeEEcCCCceeEEEeCCceEEEEecchh
Confidence            57889999999999999999999999999998864

>KOG1310|consensus

Probab=99.09  E-value=2.5e-10  Score=80.37  Aligned_cols=69  Identities=17%  Similarity=0.268  Sum_probs=62.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEe-cCCcceeec---------cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVL-GKHTNTIVG---------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~-~~h~~~i~~---------~~las~s~d~~v~iwd~~~   70 (89)
                      +|.+-|.+++|+.||.+|++|++|-.+.|||....|.+..+ ++|...|.|         .++++|..|..|+++|+.+
T Consensus        48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~  126 (758)
T KOG1310|consen   48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS  126 (758)
T ss_pred             cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence            67888999999999999999999999999999887777766 589888877         7999999999999999973

>KOG0313|consensus

Probab=99.09  E-value=3.3e-10  Score=76.47  Aligned_cols=68  Identities=12%  Similarity=0.304  Sum_probs=60.9

Q ss_pred             CCcCCcEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCe-EeeEecCCcceeec------cEEEEEeCCCCEEEEeC
Q psy12376          1 MNLRYYIFLLQTSQVGQ-VLAIGTARGNLTVYNHMTSK-RVPVLGKHTNTIVG------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         1 ~~~~~~i~~~~~spdg~-~la~g~~~g~v~iwd~~~~~-~~~~~~~h~~~i~~------~~las~s~d~~v~iwd~   68 (89)
                      ++|...|+++.|+|... +|++|+.|+++++||.|+-+ .+..+.+|.+.|.+      .++++||.|.+|+|+.-
T Consensus       342 ~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  342 IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             ecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEecc
Confidence            57888999999999664 88999999999999999866 78889999999988      69999999999999865

>KOG0267|consensus

Probab=99.09  E-value=4e-11  Score=85.92  Aligned_cols=85  Identities=21%  Similarity=0.253  Sum_probs=75.7

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|..+|.++.|+++...|++|+.+|+|++||+..++.++.+.+|...+..       .|+|+|+.|..+.+||++-..+.
T Consensus        68 ~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~  147 (825)
T KOG0267|consen   68 GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCS  147 (825)
T ss_pred             ccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCce
Confidence            46778999999999999999999999999999999999999999876654       78999999999999999877788


Q ss_pred             eeeCCCCCCCcC
Q psy12376         75 PVLGKHTKSKPS   86 (89)
Q Consensus        75 ~~l~~h~~~~~~   86 (89)
                      +..++|+..+.+
T Consensus       148 ~~~~s~~~vv~~  159 (825)
T KOG0267|consen  148 HTYKSHTRVVDV  159 (825)
T ss_pred             eeecCCcceeEE
Confidence            888888876554

>KOG1034|consensus

Probab=99.07  E-value=9.8e-10  Score=73.31  Aligned_cols=85  Identities=19%  Similarity=0.171  Sum_probs=72.4

Q ss_pred             cCCcEEEEEEccCC----CEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCC
Q psy12376          3 LRYYIFLLQTSQVG----QVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         3 ~~~~i~~~~~spdg----~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~   70 (89)
                      ++...+-++|+-|-    .++|+|+.-|.|+|.|..+++....+.+|...|+.        +++.+||.|.+|++||+++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            34457788898653    48999999999999999999888899999998876        7999999999999999999


Q ss_pred             CEEEeeeC---CCCCCCcCC
Q psy12376         71 SKRVPVLG---KHTKSKPST   87 (89)
Q Consensus        71 ~~~~~~l~---~h~~~~~~~   87 (89)
                      ..++..++   +|...+.|.
T Consensus       168 ~~Cv~VfGG~egHrdeVLSv  187 (385)
T KOG1034|consen  168 DVCVAVFGGVEGHRDEVLSV  187 (385)
T ss_pred             CeEEEEecccccccCcEEEE
Confidence            99998874   777776654

>KOG0291|consensus

Probab=99.06  E-value=1.9e-09  Score=77.91  Aligned_cols=80  Identities=23%  Similarity=0.370  Sum_probs=72.6

Q ss_pred             CcEEEEEEccCCCEEEEEeCC-CcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEee
Q psy12376          5 YYIFLLQTSQVGQVLAIGTAR-GNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~-g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~   76 (89)
                      .+|..++|+..|..||.|+.. |.+.||+-++...+-+.++|-..+.|       +++|+|++||.|+|||..++-+..+
T Consensus       308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT  387 (893)
T KOG0291|consen  308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVT  387 (893)
T ss_pred             ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEE
Confidence            468899999999999999874 89999999887788888999999888       7999999999999999999999999


Q ss_pred             eCCCCCCC
Q psy12376         77 LGKHTKSK   84 (89)
Q Consensus        77 l~~h~~~~   84 (89)
                      +--|+..+
T Consensus       388 FteHts~V  395 (893)
T KOG0291|consen  388 FTEHTSGV  395 (893)
T ss_pred             eccCCCce
Confidence            99998764

>KOG1007|consensus

Probab=99.05  E-value=6.1e-10  Score=73.45  Aligned_cols=78  Identities=19%  Similarity=0.213  Sum_probs=62.3

Q ss_pred             cCCcEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCeEeeEec-CCcceeec--------cEEEEEeCCCCEEEEeCC-C
Q psy12376          3 LRYYIFLLQTSQ--VGQVLAIGTARGNLTVYNHMTSKRVPVLG-KHTNTIVG--------QVLAIGTARGNLTVYNHM-T   70 (89)
Q Consensus         3 ~~~~i~~~~~sp--dg~~la~g~~~g~v~iwd~~~~~~~~~~~-~h~~~i~~--------~~las~s~d~~v~iwd~~-~   70 (89)
                      ++...++-+|||  ||+++++ +.++++..||.++.++...+. .|...++.        .+||+|++|+.|+|||.+ +
T Consensus       169 ~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t  247 (370)
T KOG1007|consen  169 MRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT  247 (370)
T ss_pred             ccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence            455688889998  7888777 458899999999877666654 57666665        689999999999999997 5


Q ss_pred             CEEEeeeCCCC
Q psy12376         71 SKRVPVLGKHT   81 (89)
Q Consensus        71 ~~~~~~l~~h~   81 (89)
                      ...++.+.+|+
T Consensus       248 k~pv~el~~Hs  258 (370)
T KOG1007|consen  248 KFPVQELPGHS  258 (370)
T ss_pred             CccccccCCCc
Confidence            56667777776

>KOG1036|consensus

Probab=99.05  E-value=1e-09  Score=72.39  Aligned_cols=82  Identities=17%  Similarity=0.238  Sum_probs=67.0

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec------cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG------QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~------~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      .+.|+.+.|+|.+..|+++++||++++||.........+ .|+.++.+      ..+++|+-||.|+.+|+.++.. ..+
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~-~~i   90 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNE-DQI   90 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCCceEEEeccCceEEEEEecCCcc-eee
Confidence            467999999999999999999999999999876433333 57777765      6899999999999999987655 557


Q ss_pred             CCCCCCCcCC
Q psy12376         78 GKHTKSKPST   87 (89)
Q Consensus        78 ~~h~~~~~~~   87 (89)
                      +.|...+.+.
T Consensus        91 gth~~~i~ci  100 (323)
T KOG1036|consen   91 GTHDEGIRCI  100 (323)
T ss_pred             ccCCCceEEE
Confidence            8888877654

>KOG0278|consensus

Probab=99.04  E-value=8.6e-10  Score=71.65  Aligned_cols=72  Identities=10%  Similarity=0.152  Sum_probs=63.9

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEe-cCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVL-GKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~-~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      ++-.|.+.+.+|+-.++++|..|..++.||..+|+.+..+ .+|-++|.|       ...|+||+||+|+||....++..
T Consensus       223 ~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  223 MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            3456889999999999999999999999999999988886 789999998       78999999999999998765543

>KOG0303|consensus

Probab=99.04  E-value=1.2e-09  Score=74.31  Aligned_cols=83  Identities=17%  Similarity=0.191  Sum_probs=71.9

Q ss_pred             CcCCcEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          2 NLRYYIFLLQTSQVG-QVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         2 ~~~~~i~~~~~spdg-~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      +|...|-.++|+|.. +.|++++.|.+|.+||..+|+.+-.+. |.+-|.+       .+|+++..|..|+|||.++++.
T Consensus       129 gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~  207 (472)
T KOG0303|consen  129 GHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV  207 (472)
T ss_pred             ecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE
Confidence            466678889999975 589999999999999999999877776 8887776       8999999999999999999999


Q ss_pred             EeeeCCCCCCCc
Q psy12376         74 VPVLGKHTKSKP   85 (89)
Q Consensus        74 ~~~l~~h~~~~~   85 (89)
                      +..-.+|.+..+
T Consensus       208 v~e~~~heG~k~  219 (472)
T KOG0303|consen  208 VSEGVAHEGAKP  219 (472)
T ss_pred             eeecccccCCCc
Confidence            988778876644

>KOG0772|consensus

Probab=99.03  E-value=3.5e-10  Score=78.97  Aligned_cols=66  Identities=17%  Similarity=0.217  Sum_probs=53.8

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE--e-eEecCCcc--eeec-------cEEEEEeCCCCEEEEeCCC
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR--V-PVLGKHTN--TIVG-------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~--~-~~~~~h~~--~i~~-------~~las~s~d~~v~iwd~~~   70 (89)
                      =+++.|+|+|||+.||+|+.||.|.+|+..+.-.  . ..-..|..  .|.|       ++|+|-|.|.++++||++.
T Consensus       318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq  395 (641)
T KOG0772|consen  318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ  395 (641)
T ss_pred             cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence            3588999999999999999999999999754222  1 22246766  6666       8999999999999999975

>KOG0643|consensus

Probab=99.03  E-value=2.5e-09  Score=69.90  Aligned_cols=74  Identities=16%  Similarity=0.223  Sum_probs=63.8

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE-eeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR-VPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~-~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      .+.++.+-|+|.+++|++|..||.|.+||+++|+. +...+.|...|+.       .+++++|.|.+..+||+++-++++
T Consensus       147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K  226 (327)
T KOG0643|consen  147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK  226 (327)
T ss_pred             ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEE
Confidence            35699999999999999999999999999999854 4444668777776       899999999999999999888777


Q ss_pred             ee
Q psy12376         76 VL   77 (89)
Q Consensus        76 ~l   77 (89)
                      +.
T Consensus       227 ty  228 (327)
T KOG0643|consen  227 TY  228 (327)
T ss_pred             Ee
Confidence            54

>KOG0299|consensus

Probab=99.03  E-value=9.3e-10  Score=75.62  Aligned_cols=86  Identities=16%  Similarity=0.196  Sum_probs=72.3

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEee----E------------e--cCCcceeec-------cEEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVP----V------------L--GKHTNTIVG-------QVLAI   56 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~----~------------~--~~h~~~i~~-------~~las   56 (89)
                      +|.-++++++++||.++..+++.+|+|.=|++.+|+..+    .            .  ..|.+.+.+       +|||+
T Consensus       140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat  219 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT  219 (479)
T ss_pred             cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence            467789999999999999999999999999999887431    1            0  134454444       89999


Q ss_pred             EeCCCCEEEEeCCCCEEEeeeCCCCCCCcCC
Q psy12376         57 GTARGNLTVYNHMTSKRVPVLGKHTKSKPST   87 (89)
Q Consensus        57 ~s~d~~v~iwd~~~~~~~~~l~~h~~~~~~~   87 (89)
                      |+.|..|.||+.++.+.++.+.+|.+.|++.
T Consensus       220 gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L  250 (479)
T KOG0299|consen  220 GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSL  250 (479)
T ss_pred             cCCCceEEEecCcccchhhcccccccceeee
Confidence            9999999999999999999999999998764

>KOG0644|consensus

Probab=99.03  E-value=1.2e-10  Score=84.77  Aligned_cols=83  Identities=16%  Similarity=0.244  Sum_probs=77.8

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|...|+|+.|.-.|.++.+|++|-.++||.+.+++++..+.||.+.|+.       .++|++|.|.-|++|.+.++..+
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv  267 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV  267 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchH
Confidence            67888999999999999999999999999999999999999999998887       68999999999999999999999


Q ss_pred             eeeCCCCCCC
Q psy12376         75 PVLGKHTKSK   84 (89)
Q Consensus        75 ~~l~~h~~~~   84 (89)
                      ..+.+|++.+
T Consensus       268 svLrghtgav  277 (1113)
T KOG0644|consen  268 SVLRGHTGAV  277 (1113)
T ss_pred             HHHhccccce
Confidence            9999999664

>KOG1034|consensus

Probab=99.03  E-value=9.4e-10  Score=73.37  Aligned_cols=71  Identities=14%  Similarity=0.151  Sum_probs=62.3

Q ss_pred             CcCCcEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEeeEec---CCcceeec-------cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQVG-QVLAIGTARGNLTVYNHMTSKRVPVLG---KHTNTIVG-------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg-~~la~g~~~g~v~iwd~~~~~~~~~~~---~h~~~i~~-------~~las~s~d~~v~iwd~~~   70 (89)
                      +|...|..+.|+|+. +++++++.|..|++|++++..++..+.   +|.+.|.+       .+|+|++.|.++++|++..
T Consensus       133 ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  133 GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence            577889999999976 588999999999999999999988875   58888876       8999999999999999974


Q ss_pred             CE
Q psy12376         71 SK   72 (89)
Q Consensus        71 ~~   72 (89)
                      .+
T Consensus       213 ~~  214 (385)
T KOG1034|consen  213 KE  214 (385)
T ss_pred             hH
Confidence            33

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.02  E-value=1.4e-09  Score=51.19  Aligned_cols=31  Identities=26%  Similarity=0.343  Sum_probs=29.3

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEe
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYN   32 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd   32 (89)
                      +|.++|++++|+|++.+|++++.|+.|++||
T Consensus         9 ~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    9 GHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4778999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0646|consensus

Probab=99.01  E-value=2.6e-09  Score=73.56  Aligned_cols=72  Identities=17%  Similarity=0.207  Sum_probs=61.3

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCC---------CeEeeEecCCcceeec---------cEEEEEeCCCCEEEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMT---------SKRVPVLGKHTNTIVG---------QVLAIGTARGNLTVY   66 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~---------~~~~~~~~~h~~~i~~---------~~las~s~d~~v~iw   66 (89)
                      -.|+|+.|+-||.+|++|+.||.|.+|.+..         -+.++.+..|+-+|.+         .+++|+|.|.++++|
T Consensus       124 Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~w  203 (476)
T KOG0646|consen  124 QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLW  203 (476)
T ss_pred             cceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEE
Confidence            3599999999999999999999999998643         1345677789888876         799999999999999


Q ss_pred             eCCCCEEEee
Q psy12376         67 NHMTSKRVPV   76 (89)
Q Consensus        67 d~~~~~~~~~   76 (89)
                      |+..+..+..
T Consensus       204 dlS~g~LLlt  213 (476)
T KOG0646|consen  204 DLSLGVLLLT  213 (476)
T ss_pred             EeccceeeEE
Confidence            9988876654

>KOG1407|consensus

Probab=99.01  E-value=1.2e-09  Score=71.12  Aligned_cols=75  Identities=13%  Similarity=0.152  Sum_probs=61.7

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeE--ecCCcceee---c-----cEEEEEeCCCCEEEEeCCCCE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPV--LGKHTNTIV---G-----QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~--~~~h~~~i~---~-----~~las~s~d~~v~iwd~~~~~   72 (89)
                      |..++-+++|..+|..||+|+-|+++.+|++...+....  ..+|.+.+.   +     .+|++++.|.+|++||++.++
T Consensus        19 ~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k   98 (313)
T KOG1407|consen   19 HVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGK   98 (313)
T ss_pred             hhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCc
Confidence            455789999999999999999999999999987655443  346765443   2     899999999999999999988


Q ss_pred             EEeee
Q psy12376         73 RVPVL   77 (89)
Q Consensus        73 ~~~~l   77 (89)
                      +....
T Consensus        99 ~~~~i  103 (313)
T KOG1407|consen   99 CTARI  103 (313)
T ss_pred             EEEEe
Confidence            87654

>KOG4283|consensus

Probab=99.01  E-value=2.5e-09  Score=70.86  Aligned_cols=87  Identities=20%  Similarity=0.306  Sum_probs=71.4

Q ss_pred             CcCCcEEEEEEccCC---CEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQVG---QVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg---~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~   70 (89)
                      ++++.|+.-+|||-.   ..+|+|+.+-.|++-|+.+|..-..+.+|.+.|.+        =.|++||.||.+++||++.
T Consensus       141 ~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRr  220 (397)
T KOG4283|consen  141 KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRR  220 (397)
T ss_pred             ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeec
Confidence            356778999999954   37788888999999999999999999999998887        4799999999999999975


Q ss_pred             C-EEEeeeCCCC-CCCcCCC
Q psy12376         71 S-KRVPVLGKHT-KSKPSTE   88 (89)
Q Consensus        71 ~-~~~~~l~~h~-~~~~~~~   88 (89)
                      . .+...|..|. ++.++.|
T Consensus       221 asgcf~~lD~hn~k~~p~~~  240 (397)
T KOG4283|consen  221 ASGCFRVLDQHNTKRPPILK  240 (397)
T ss_pred             ccceeEEeecccCccCcccc
Confidence            4 6777787777 3344433

>KOG0646|consensus

Probab=99.00  E-value=6.6e-10  Score=76.41  Aligned_cols=67  Identities=25%  Similarity=0.344  Sum_probs=61.9

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCC
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~   69 (89)
                      .++++.+++-+|+|.+|+.|+..|.+++|.+.+|+.+..+.+|=..|+|       .+|+|||.||.|.+|.+-
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~  153 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT  153 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence            4678999999999999999999999999999999999988888778887       899999999999999973

>KOG1332|consensus

Probab=98.99  E-value=7.6e-10  Score=71.52  Aligned_cols=85  Identities=18%  Similarity=0.229  Sum_probs=67.5

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCC---eEeeEecCCcceeec---------cEEEEEeCCCCEEEEeCCC
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTS---KRVPVLGKHTNTIVG---------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~---~~~~~~~~h~~~i~~---------~~las~s~d~~v~iwd~~~   70 (89)
                      |.|-|-.+...--|+.||+++.|++|+||..+++   +.+..+.+|.+|+.-         .+|||++.||.|.||.-+.
T Consensus        10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~   89 (299)
T KOG1332|consen   10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN   89 (299)
T ss_pred             hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC
Confidence            4444555566667899999999999999999763   467789999999875         8999999999999999987


Q ss_pred             CEEEe--eeCCCCCCCcCC
Q psy12376         71 SKRVP--VLGKHTKSKPST   87 (89)
Q Consensus        71 ~~~~~--~l~~h~~~~~~~   87 (89)
                      +.-.+  ....|+.++++.
T Consensus        90 g~w~k~~e~~~h~~SVNsV  108 (299)
T KOG1332|consen   90 GRWTKAYEHAAHSASVNSV  108 (299)
T ss_pred             Cchhhhhhhhhhcccceee
Confidence            75433  345788777765

>KOG0301|consensus

Probab=98.98  E-value=5.6e-09  Score=74.77  Aligned_cols=66  Identities=9%  Similarity=0.109  Sum_probs=59.6

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~   69 (89)
                      +|.|.|..+++=|++ .|++++.||.|++|+. +|+++..+.+|+..+.+       ..++|+++|++++||+..
T Consensus       177 gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  177 GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             cchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            588999999998885 6688899999999999 78899999999998876       799999999999999986

>KOG1332|consensus

Probab=98.97  E-value=3.1e-09  Score=68.71  Aligned_cols=86  Identities=14%  Similarity=0.194  Sum_probs=68.1

Q ss_pred             CcCCcEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCeE--eeEecCCcceeec---------cEEEEEeCCCCEEEEeC
Q psy12376          2 NLRYYIFLLQTSQ--VGQVLAIGTARGNLTVYNHMTSKR--VPVLGKHTNTIVG---------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         2 ~~~~~i~~~~~sp--dg~~la~g~~~g~v~iwd~~~~~~--~~~~~~h~~~i~~---------~~las~s~d~~v~iwd~   68 (89)
                      +|.++++.++|-.  -|.+||+++.||+|.||.-.+|+-  ......|...+++         -.||+|+.||.|.|.+.
T Consensus        54 Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~  133 (299)
T KOG1332|consen   54 GHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTY  133 (299)
T ss_pred             CCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEE
Confidence            6889999999987  899999999999999999887743  3345678887777         68999999999999998


Q ss_pred             CCC-E--EEeeeCCCCCCCcCC
Q psy12376         69 MTS-K--RVPVLGKHTKSKPST   87 (89)
Q Consensus        69 ~~~-~--~~~~l~~h~~~~~~~   87 (89)
                      ++. .  .......|+-.++++
T Consensus       134 ~~~g~w~t~ki~~aH~~GvnsV  155 (299)
T KOG1332|consen  134 DSSGGWTTSKIVFAHEIGVNSV  155 (299)
T ss_pred             cCCCCccchhhhhcccccccee
Confidence            643 2  223446787776654

>KOG0300|consensus

Probab=98.97  E-value=1.1e-09  Score=73.19  Aligned_cols=82  Identities=11%  Similarity=0.151  Sum_probs=68.6

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCC--------------e--------------------------EeeE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTS--------------K--------------------------RVPV   41 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~--------------~--------------------------~~~~   41 (89)
                      +|.+.+.++.|++++..+++++.|++..||...-.              +                          .+..
T Consensus       188 GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~  267 (481)
T KOG0300|consen  188 GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR  267 (481)
T ss_pred             ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee
Confidence            67889999999999999999999999999982210              0                          0334


Q ss_pred             ecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEeeeCCCCCC
Q psy12376         42 LGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPVLGKHTKS   83 (89)
Q Consensus        42 ~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~l~~h~~~   83 (89)
                      +.+|...|.|       +.++++|.|.+..+||+++++.++.|-+|...
T Consensus       268 ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~E  316 (481)
T KOG0300|consen  268 LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSE  316 (481)
T ss_pred             eeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchh
Confidence            6778887776       89999999999999999999999999888753

>KOG2048|consensus

Probab=98.97  E-value=2.4e-09  Score=76.37  Aligned_cols=81  Identities=12%  Similarity=0.291  Sum_probs=63.5

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEec----C-Cc-c--eeec------cEEEEEeCCCCEEEEeCC
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLG----K-HT-N--TIVG------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~----~-h~-~--~i~~------~~las~s~d~~v~iwd~~   69 (89)
                      +..+.+++|+|++..||+|+.||.|++||...+..+....    + -+ .  .|.+      ..||+|..-|+|.+||..
T Consensus       154 ~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~  233 (691)
T KOG2048|consen  154 KSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSI  233 (691)
T ss_pred             cceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEccc
Confidence            3568999999999999999999999999999887655221    1 11 1  1222      899999999999999999


Q ss_pred             CCEEEeeeCCCCCCC
Q psy12376         70 TSKRVPVLGKHTKSK   84 (89)
Q Consensus        70 ~~~~~~~l~~h~~~~   84 (89)
                      .+.+++....|.+.+
T Consensus       234 ~gTLiqS~~~h~adV  248 (691)
T KOG2048|consen  234 FGTLIQSHSCHDADV  248 (691)
T ss_pred             Ccchhhhhhhhhcce
Confidence            998877766666544

>KOG1274|consensus

Probab=98.96  E-value=3.2e-09  Score=77.72  Aligned_cols=78  Identities=19%  Similarity=0.262  Sum_probs=70.5

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      ..-++.+++|+.+|+++|+|++|-.|++-+..+......+.+|..+|.+       ++||+.+.||.|+|||+.++...+
T Consensus        95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~  174 (933)
T KOG1274|consen   95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSK  174 (933)
T ss_pred             eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhh
Confidence            4457899999999999999999999999999988888899999999988       899999999999999999988877


Q ss_pred             eeCCC
Q psy12376         76 VLGKH   80 (89)
Q Consensus        76 ~l~~h   80 (89)
                      .+.+-
T Consensus       175 tl~~v  179 (933)
T KOG1274|consen  175 TLTGV  179 (933)
T ss_pred             hcccC
Confidence            76543

>KOG0278|consensus

Probab=98.95  E-value=5e-10  Score=72.74  Aligned_cols=76  Identities=18%  Similarity=0.199  Sum_probs=63.8

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCe-EeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSK-RVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~-~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      |+.-|..++|+.|.++|++|+.+..++|||...-+ ....+.+|.+.|+.       +.|.|.++|++|++||.+++..+
T Consensus        99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v  178 (334)
T KOG0278|consen   99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEV  178 (334)
T ss_pred             hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEE
Confidence            55568899999999999999999999999986533 45567789887764       66777799999999999999988


Q ss_pred             eeeC
Q psy12376         75 PVLG   78 (89)
Q Consensus        75 ~~l~   78 (89)
                      +.|.
T Consensus       179 ~sL~  182 (334)
T KOG0278|consen  179 QSLE  182 (334)
T ss_pred             EEEe
Confidence            8764

>KOG2394|consensus

Probab=98.94  E-value=4.5e-09  Score=73.76  Aligned_cols=71  Identities=14%  Similarity=0.090  Sum_probs=59.8

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec---------------------------------
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG---------------------------------   51 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~---------------------------------   51 (89)
                      ..+.|++|||||++||+|+.|--|.||.....+.+..-++|+++|..                                 
T Consensus       333 GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r  412 (636)
T KOG2394|consen  333 GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIR  412 (636)
T ss_pred             cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccc
Confidence            35889999999999999999999999999999988887778765532                                 


Q ss_pred             ----------------------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376         52 ----------------------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus        52 ----------------------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                                            -.|.+.+.|..+.+||+......+
T Consensus       413 ~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  413 ANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP  458 (636)
T ss_pred             cCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence                                  268899999999999997655443

>KOG1445|consensus

Probab=98.93  E-value=5.4e-10  Score=79.93  Aligned_cols=79  Identities=19%  Similarity=0.259  Sum_probs=67.0

Q ss_pred             cEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeE-------eeEecCCcceeec--------cEEEEEeCCCCEEEEeCC
Q psy12376          6 YIFLLQTSQ-VGQVLAIGTARGNLTVYNHMTSKR-------VPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         6 ~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~~~~-------~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~   69 (89)
                      -|+.+.|.| |.+.||.+++||.|++|.+..+..       -..+..|...|.+        +.|++++.|.+|++||++
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence            489999999 778999999999999999865422       3356678877766        889999999999999999


Q ss_pred             CCEEEeeeCCCCCCC
Q psy12376         70 TSKRVPVLGKHTKSK   84 (89)
Q Consensus        70 ~~~~~~~l~~h~~~~   84 (89)
                      +++....+.+|+..+
T Consensus       709 ~~~~~~~l~gHtdqI  723 (1012)
T KOG1445|consen  709 NAKLYSRLVGHTDQI  723 (1012)
T ss_pred             hhhhhheeccCcCce
Confidence            998888999998764

>KOG0268|consensus

Probab=98.92  E-value=1.3e-09  Score=73.53  Aligned_cols=69  Identities=12%  Similarity=0.143  Sum_probs=63.2

Q ss_pred             CcCCcEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQVG-QVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg-~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----~~las~s~d~~v~iwd~~~   70 (89)
                      +|+|.|.|++=+|.. ..+|+|+.||.|++||+.+-++...++.|.+.|..     ..++++++|.+|+.|-++.
T Consensus        64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~  138 (433)
T KOG0268|consen   64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG  138 (433)
T ss_pred             ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC
Confidence            688999999999987 68999999999999999998889999999998876     7899999999999999754

>KOG0270|consensus

Probab=98.91  E-value=1.2e-09  Score=74.77  Aligned_cols=69  Identities=19%  Similarity=0.225  Sum_probs=61.6

Q ss_pred             CcCCcEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQVG-QVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg-~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~   70 (89)
                      +|++.+.+++|.-.- ..||+|+.|.+|.+||+.+|++...+.-|.+.|.+        .+|.+|+.|++|.+.|.+.
T Consensus       241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence            477778888998754 58999999999999999999998888888898887        7999999999999999983

>KOG0288|consensus

Probab=98.91  E-value=7.7e-10  Score=75.39  Aligned_cols=72  Identities=13%  Similarity=0.151  Sum_probs=63.9

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEee
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~   76 (89)
                      +.|+.+.|.++++++++.+.|+.+++|+..+++...++.+|++.|.+       ..+++|+.|.++.+||+..+.+.+.
T Consensus       220 g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt  298 (459)
T KOG0288|consen  220 GNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT  298 (459)
T ss_pred             CCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecc
Confidence            46999999999999999999999999999999999999999999988       3489999999999999976665543

>KOG3914|consensus

Probab=98.90  E-value=3.4e-09  Score=71.81  Aligned_cols=77  Identities=10%  Similarity=0.089  Sum_probs=60.9

Q ss_pred             CCcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeE-ecCCcceeec------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          1 MNLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPV-LGKHTNTIVG------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         1 ~~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~-~~~h~~~i~~------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      |+|-.-++.++||||+++|.++..|.+|++-....--.+.. +-||+..|..      ..|.|+|.|++|++||+.+|+.
T Consensus       148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKL  227 (390)
T ss_pred             hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCc
Confidence            45666689999999999999999999999977643223333 3368776654      5679999999999999999988


Q ss_pred             Eeee
Q psy12376         74 VPVL   77 (89)
Q Consensus        74 ~~~l   77 (89)
                      .+.+
T Consensus       228 L~t~  231 (390)
T KOG3914|consen  228 LDTC  231 (390)
T ss_pred             cccc
Confidence            7654

>KOG2110|consensus

Probab=98.90  E-value=2e-08  Score=67.74  Aligned_cols=70  Identities=16%  Similarity=0.226  Sum_probs=59.1

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCC-cEEEEeCCCCeEeeEecCCcceee--c-------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARG-NLTVYNHMTSKRVPVLGKHTNTIV--G-------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g-~v~iwd~~~~~~~~~~~~h~~~i~--~-------~~las~s~d~~v~iwd~~~~~   72 (89)
                      |++++.+++|+|+|.+||++++.| .|+||.+.+|+.+.++.....+++  +       .+|++.|+.++|+|+.++...
T Consensus       172 H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  172 HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            778899999999999999999999 689999999999888864333332  1       899999999999999996543

>KOG0269|consensus

Probab=98.89  E-value=2.5e-09  Score=77.30  Aligned_cols=84  Identities=13%  Similarity=0.150  Sum_probs=68.4

Q ss_pred             cCCcEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCC-CE
Q psy12376          3 LRYYIFLLQTSQV-GQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMT-SK   72 (89)
Q Consensus         3 ~~~~i~~~~~spd-g~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~-~~   72 (89)
                      |...+.++.|++. -.+|++|+.||.|++||++..+....+.+....|++        .+|+++.+.|.|++||++. .+
T Consensus       132 H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r  211 (839)
T KOG0269|consen  132 HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR  211 (839)
T ss_pred             hccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh
Confidence            5567899999995 468899999999999999987776666665555555        7999999999999999974 56


Q ss_pred             EEeeeCCCCCCCcC
Q psy12376         73 RVPVLGKHTKSKPS   86 (89)
Q Consensus        73 ~~~~l~~h~~~~~~   86 (89)
                      .+..+-+|.+.+.+
T Consensus       212 ~~~k~~AH~GpV~c  225 (839)
T KOG0269|consen  212 CEKKLTAHNGPVLC  225 (839)
T ss_pred             HHHHhhcccCceEE
Confidence            66777888887654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.88  E-value=8.5e-08  Score=60.21  Aligned_cols=74  Identities=20%  Similarity=0.290  Sum_probs=53.2

Q ss_pred             CCcEEEEEEccCCCEEEEE--eCCCcEEEEeCCCCeEeeEecCCc-ceeec----cEEEEEeCC---CCEEEEeCCCCEE
Q psy12376          4 RYYIFLLQTSQVGQVLAIG--TARGNLTVYNHMTSKRVPVLGKHT-NTIVG----QVLAIGTAR---GNLTVYNHMTSKR   73 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g--~~~g~v~iwd~~~~~~~~~~~~h~-~~i~~----~~las~s~d---~~v~iwd~~~~~~   73 (89)
                      ..+|..++|+|+|+.||+.  ..++.|.+||.+ ++.+..+.... ..|.-    ++|+.|+.+   |.|.+||+++.+.
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~  137 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK  137 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence            3469999999999987654  356799999997 56666665322 22221    788888754   5699999998777


Q ss_pred             EeeeC
Q psy12376         74 VPVLG   78 (89)
Q Consensus        74 ~~~l~   78 (89)
                      +....
T Consensus       138 i~~~~  142 (194)
T PF08662_consen  138 ISTFE  142 (194)
T ss_pred             eeccc
Confidence            76543

>KOG0308|consensus

Probab=98.87  E-value=1.5e-08  Score=72.39  Aligned_cols=70  Identities=11%  Similarity=0.139  Sum_probs=65.4

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~   71 (89)
                      +|++.|.++-.++||..+++++.||+|++||....+++..+..|+..+.+       ..+.+|+.|+.|+.=|+++.
T Consensus       211 GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  211 GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            68899999999999999999999999999999999999999999988876       89999999999999999863

>KOG0288|consensus

Probab=98.87  E-value=2.5e-08  Score=68.20  Aligned_cols=75  Identities=20%  Similarity=0.193  Sum_probs=62.2

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcc--------eeec---cEEEEEeCCCCEEEEeCCCCE
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTN--------TIVG---QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~--------~i~~---~~las~s~d~~v~iwd~~~~~   72 (89)
                      ...|+++..+++|..|.+.+-|.++.+.|.++.+....+.....        .+.+   .|+|+||.||.|+||++.+++
T Consensus       341 gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK  420 (459)
T KOG0288|consen  341 GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK  420 (459)
T ss_pred             CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCce
Confidence            45799999999999999999999999999999887766653211        1112   899999999999999999999


Q ss_pred             EEeeeC
Q psy12376         73 RVPVLG   78 (89)
Q Consensus        73 ~~~~l~   78 (89)
                      ++..+.
T Consensus       421 lE~~l~  426 (459)
T KOG0288|consen  421 LEKVLS  426 (459)
T ss_pred             EEEEec
Confidence            988764

>KOG1036|consensus

Probab=98.86  E-value=1.8e-08  Score=66.66  Aligned_cols=67  Identities=12%  Similarity=0.164  Sum_probs=58.8

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~   70 (89)
                      .|..++.+++|.++ ..+++|+-||.|+++|..++. ...++.|..+++|       +.+++||.|++|++||.+.
T Consensus        52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~-~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~  125 (323)
T KOG1036|consen   52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN-EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN  125 (323)
T ss_pred             ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCc-ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc
Confidence            46788999999985 688999999999999998875 3567789999998       7899999999999999985

>KOG2394|consensus

Probab=98.86  E-value=5.1e-09  Score=73.49  Aligned_cols=79  Identities=18%  Similarity=0.148  Sum_probs=65.5

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      +.|...+|||||++||+-+.||-++|||-.+.+.+..+..+=+.+.|       +||++|++|--|.||.+..++++..=
T Consensus       291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG  370 (636)
T KOG2394|consen  291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG  370 (636)
T ss_pred             ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec
Confidence            35788999999999999999999999998887665555444344444       99999999999999999999998887


Q ss_pred             CCCCCC
Q psy12376         78 GKHTKS   83 (89)
Q Consensus        78 ~~h~~~   83 (89)
                      .+|..=
T Consensus       371 qGHkSW  376 (636)
T KOG2394|consen  371 QGHKSW  376 (636)
T ss_pred             cccccc
Confidence            777643

>KOG1063|consensus

Probab=98.85  E-value=1.7e-08  Score=72.42  Aligned_cols=70  Identities=16%  Similarity=0.174  Sum_probs=58.6

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE----eeEecCCcceeec-------cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR----VPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~----~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~   70 (89)
                      .|.-.|+-++|||||++|++.+.|-++.+|.......    ......|+..|.+       .+|||+|+|++|.+|....
T Consensus       570 ~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~  649 (764)
T KOG1063|consen  570 GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD  649 (764)
T ss_pred             ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence            4566799999999999999999999999999754322    2346679888876       7899999999999999976


Q ss_pred             C
Q psy12376         71 S   71 (89)
Q Consensus        71 ~   71 (89)
                      .
T Consensus       650 ~  650 (764)
T KOG1063|consen  650 L  650 (764)
T ss_pred             c
Confidence            5

>KOG0322|consensus

Probab=98.85  E-value=3.3e-09  Score=69.22  Aligned_cols=62  Identities=16%  Similarity=0.282  Sum_probs=58.6

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeC
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~   68 (89)
                      +..+..-||++.||++++||.++||+-++...+..+.-|...+++       +++|+||.|+.|.+|++
T Consensus       254 v~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  254 VSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            788999999999999999999999999999999999999998887       89999999999999986

>KOG1539|consensus

Probab=98.82  E-value=3.2e-08  Score=72.24  Aligned_cols=69  Identities=12%  Similarity=0.065  Sum_probs=55.6

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcce--eec----cEEEEEeCC-CCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNT--IVG----QVLAIGTAR-GNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~--i~~----~~las~s~d-~~v~iwd~~~   70 (89)
                      +|.+.|+.++|||||++|++++.|++|++||+.++.++-.+.--.-+  +..    .+||++..| ..|++|.-.+
T Consensus       574 gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  574 GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence            58899999999999999999999999999999999876554322111  111    899999888 7899998654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.82  E-value=1.4e-07  Score=61.25  Aligned_cols=82  Identities=24%  Similarity=0.412  Sum_probs=68.8

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeEeeEecCCcceeec-------c-EEEEEeCCCCEEEEeCCCCE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTA-RGNLTVYNHMTSKRVPVLGKHTNTIVG-------Q-VLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~-~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~-~las~s~d~~v~iwd~~~~~   72 (89)
                      .|...+..++|+|++.+++.++. ++.+.+|+...++.+..+.+|...+.+       . ++++++.|+.+.+||...+.
T Consensus       153 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~  232 (466)
T COG2319         153 GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK  232 (466)
T ss_pred             cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc
Confidence            45677899999999999998885 999999999988888888888888776       3 56666999999999998777


Q ss_pred             EEe-eeCCCCCC
Q psy12376         73 RVP-VLGKHTKS   83 (89)
Q Consensus        73 ~~~-~l~~h~~~   83 (89)
                      ... .+.+|...
T Consensus       233 ~~~~~~~~~~~~  244 (466)
T COG2319         233 LLRSTLSGHSDS  244 (466)
T ss_pred             EEeeecCCCCcc
Confidence            777 67787765

>KOG0639|consensus

Probab=98.80  E-value=3.5e-08  Score=69.23  Aligned_cols=80  Identities=18%  Similarity=0.235  Sum_probs=63.3

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCC--eEeeEecCCcceeec---------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTS--KRVPVLGKHTNTIVG---------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~--~~~~~~~~h~~~i~~---------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      ..|.++..+|||+.|++|+...++.|||...-  +...++..  ....|         +..+++-.||.|.|||+++...
T Consensus       466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelts--sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~  543 (705)
T KOG0639|consen  466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTS--SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL  543 (705)
T ss_pred             cceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCC--cchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence            35889999999999999999999999998652  22222221  11222         7888889999999999999999


Q ss_pred             EeeeCCCCCCCcC
Q psy12376         74 VPVLGKHTKSKPS   86 (89)
Q Consensus        74 ~~~l~~h~~~~~~   86 (89)
                      +..+.+|+..+++
T Consensus       544 VrqfqGhtDGasc  556 (705)
T KOG0639|consen  544 VRQFQGHTDGASC  556 (705)
T ss_pred             eecccCCCCCcee
Confidence            9999999988765

>KOG0268|consensus

Probab=98.79  E-value=4.7e-09  Score=70.86  Aligned_cols=70  Identities=14%  Similarity=0.281  Sum_probs=54.4

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcc---eeec-------cEEEEEeCCCCEEEEeCCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTN---TIVG-------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~---~i~~-------~~las~s~d~~v~iwd~~~~   71 (89)
                      +|...+..+.|||.|+-|++|+.|.+|+||..+.+..--.+  |+.   .|.|       +|++|||+|++|++|.-...
T Consensus       270 dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY--htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  270 DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY--HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS  347 (433)
T ss_pred             ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh--hHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence            46667999999999999999999999999999876542221  222   1222       89999999999999997644


Q ss_pred             EE
Q psy12376         72 KR   73 (89)
Q Consensus        72 ~~   73 (89)
                      +.
T Consensus       348 ek  349 (433)
T KOG0268|consen  348 EK  349 (433)
T ss_pred             hh
Confidence            43

>KOG2445|consensus

Probab=98.77  E-value=3.2e-08  Score=65.73  Aligned_cols=67  Identities=16%  Similarity=0.280  Sum_probs=54.6

Q ss_pred             CcCCcEEEEEEccC-C---CEEEEEeCCCcEEEEeCCCC--------------------eEeeEecCCcceeec------
Q psy12376          2 NLRYYIFLLQTSQV-G---QVLAIGTARGNLTVYNHMTS--------------------KRVPVLGKHTNTIVG------   51 (89)
Q Consensus         2 ~~~~~i~~~~~spd-g---~~la~g~~~g~v~iwd~~~~--------------------~~~~~~~~h~~~i~~------   51 (89)
                      +|+++|+.++|.|+ |   ..||+++.|| |+||++...                    +.+..+.+|++.+..      
T Consensus       221 d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt  299 (361)
T KOG2445|consen  221 DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT  299 (361)
T ss_pred             CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee
Confidence            67899999999996 3   5889999999 999998741                    124456778877654      


Q ss_pred             -cEEEEEeCCCCEEEEeCC
Q psy12376         52 -QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus        52 -~~las~s~d~~v~iwd~~   69 (89)
                       ..|+|.|.||.|++|.-.
T Consensus       300 GtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  300 GTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             eeEEeecCCCceeeehhhh
Confidence             789999999999999763

>KOG0641|consensus

Probab=98.77  E-value=7.7e-08  Score=62.13  Aligned_cols=66  Identities=14%  Similarity=0.166  Sum_probs=61.8

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCC
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~   70 (89)
                      ..+.+++..|.|+.||+|-.|....+||++.|+.+..+-+|...|+|       .|+.+|+.|..|++-|+..
T Consensus       232 savaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             ceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            35899999999999999999999999999999999999999999988       7999999999999999863

>KOG1274|consensus

Probab=98.77  E-value=6.9e-08  Score=70.96  Aligned_cols=37  Identities=14%  Similarity=0.255  Sum_probs=34.5

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR   38 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~   38 (89)
                      +|..+|.++.|+|.+++||+.+-||+|++||+.++..
T Consensus       136 gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~  172 (933)
T KOG1274|consen  136 GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL  172 (933)
T ss_pred             ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchh
Confidence            6788999999999999999999999999999998754

>KOG4283|consensus

Probab=98.75  E-value=7.7e-08  Score=63.94  Aligned_cols=87  Identities=14%  Similarity=0.102  Sum_probs=69.3

Q ss_pred             CcCCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEeeEecC------C-cceeec--cEEEEEeCCCCEEEEeCCCC
Q psy12376          2 NLRYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMTSKRVPVLGK------H-TNTIVG--QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         2 ~~~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~~~~~~~~~~------h-~~~i~~--~~las~s~d~~v~iwd~~~~   71 (89)
                      .|+-.|+.+.|-| |--+|.+++=|..+++||..+.+..-.+.-      | =+++..  .++|+|.+|-.|++-|+.+|
T Consensus        99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG  178 (397)
T KOG4283|consen   99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG  178 (397)
T ss_pred             cceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC
Confidence            3566799999999 445888999999999999998765544431      1 122222  79999999999999999999


Q ss_pred             EEEeeeCCCCCCCcCCC
Q psy12376         72 KRVPVLGKHTKSKPSTE   88 (89)
Q Consensus        72 ~~~~~l~~h~~~~~~~~   88 (89)
                      ...+.|.+|...+..++
T Consensus       179 s~sH~LsGHr~~vlaV~  195 (397)
T KOG4283|consen  179 SFSHTLSGHRDGVLAVE  195 (397)
T ss_pred             cceeeeccccCceEEEE
Confidence            99999999999887654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.75  E-value=1.6e-07  Score=60.38  Aligned_cols=73  Identities=14%  Similarity=0.098  Sum_probs=53.5

Q ss_pred             cEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCeEeeEecCCcceee--c----c-EEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376          6 YIFLLQTSQVGQVL-AIGTARGNLTVYNHMTSKRVPVLGKHTNTIV--G----Q-VLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus         6 ~i~~~~~spdg~~l-a~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~--~----~-~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      .+.+++|+|+|+.+ +++..++.|.+||..+++....+..+.....  .    + ++++++.|+.+++||+++++.+..+
T Consensus        32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~  111 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI  111 (300)
T ss_pred             CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe
Confidence            35679999999976 5677889999999999887776654433211  1    4 4456677899999999887766554


Q ss_pred             C
Q psy12376         78 G   78 (89)
Q Consensus        78 ~   78 (89)
                      .
T Consensus       112 ~  112 (300)
T TIGR03866       112 P  112 (300)
T ss_pred             e
Confidence            3

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055|consensus

Probab=98.75  E-value=7e-08  Score=66.80  Aligned_cols=69  Identities=14%  Similarity=0.181  Sum_probs=57.4

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCC----cceeec----cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKH----TNTIVG----QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h----~~~i~~----~~las~s~d~~v~iwd~~~   70 (89)
                      +..+.+..+.|+.||+.|.+.+.+|.|.+||++...+++.+...    .-.+..    .|||+||..|-|.|||..+
T Consensus       342 KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  342 KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence            45677999999999999999999999999999998888887642    222221    8999999999999999754

>KOG0290|consensus

Probab=98.75  E-value=4.4e-08  Score=64.81  Aligned_cols=70  Identities=11%  Similarity=0.188  Sum_probs=56.2

Q ss_pred             CCcCCcEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeE-----------------------------------------
Q psy12376          1 MNLRYYIFLLQTSQVG-QVLAIGTARGNLTVYNHMTSKR-----------------------------------------   38 (89)
Q Consensus         1 ~~~~~~i~~~~~spdg-~~la~g~~~g~v~iwd~~~~~~-----------------------------------------   38 (89)
                      |-|..+|..++|+..+ ..||+.+.||.+++||.+..+-                                         
T Consensus       193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD  272 (364)
T KOG0290|consen  193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD  272 (364)
T ss_pred             EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence            4577889999999966 5899999999999999987421                                         


Q ss_pred             -------eeEecCCcceeec--------cEEEEEeCCCCEEEEeCCC
Q psy12376         39 -------VPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus        39 -------~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~   70 (89)
                             +..+++|+..|+.        ..|++|++|..+.|||+.+
T Consensus       273 iR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  273 IRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             ecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence                   2235567666665        7899999999999999964

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.75  E-value=2.9e-07  Score=57.79  Aligned_cols=69  Identities=14%  Similarity=0.235  Sum_probs=51.6

Q ss_pred             CcEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCeEeeEecCCcceeec------cEEEEEeC------CCCEEEEeCC
Q psy12376          5 YYIFLLQTSQVGQVLAIGTA---RGNLTVYNHMTSKRVPVLGKHTNTIVG------QVLAIGTA------RGNLTVYNHM   69 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~---~g~v~iwd~~~~~~~~~~~~h~~~i~~------~~las~s~------d~~v~iwd~~   69 (89)
                      ..+..+.|||+|++||+++-   .|.+.+||.++.+.+.... |.....+      ++|++++.      |+.++||+..
T Consensus       101 ~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  101 QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            35778999999999998863   4779999999888776654 3333222      78888764      7899999995


Q ss_pred             CCEEEe
Q psy12376         70 TSKRVP   75 (89)
Q Consensus        70 ~~~~~~   75 (89)
                       |+.+.
T Consensus       180 -G~~l~  184 (194)
T PF08662_consen  180 -GRLLY  184 (194)
T ss_pred             -CeEeE
Confidence             55444

>KOG0321|consensus

Probab=98.74  E-value=3.3e-08  Score=70.56  Aligned_cols=72  Identities=17%  Similarity=0.220  Sum_probs=61.3

Q ss_pred             CCcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeE--ecCCcceeec--------cEEEEEeCCCCEEEEeCCC
Q psy12376          1 MNLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPV--LGKHTNTIVG--------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         1 ~~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~--~~~h~~~i~~--------~~las~s~d~~v~iwd~~~   70 (89)
                      |.|...|..+.|-|-...|++.+.|.++++||+.+++....  +-+|.+.+.+        ..|++|+.||.+.|||++-
T Consensus        97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~  176 (720)
T KOG0321|consen   97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC  176 (720)
T ss_pred             ccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence            45777899999999445889999999999999999887765  7889887765        7899999999999999974


Q ss_pred             CE
Q psy12376         71 SK   72 (89)
Q Consensus        71 ~~   72 (89)
                      ..
T Consensus       177 n~  178 (720)
T KOG0321|consen  177 NG  178 (720)
T ss_pred             cc
Confidence            44

>KOG1538|consensus

Probab=98.72  E-value=4.7e-08  Score=70.61  Aligned_cols=63  Identities=19%  Similarity=0.275  Sum_probs=57.2

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCC
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~   69 (89)
                      .|..++|-|||..|+.+.. ..+.+||...|..+..+.+|++.|.|       +.+|||+.|..|.+|+..
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k   83 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK   83 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence            4889999999998887654 48999999999999999999999998       899999999999999985

>KOG1273|consensus

Probab=98.72  E-value=1.5e-07  Score=62.98  Aligned_cols=75  Identities=17%  Similarity=0.226  Sum_probs=57.3

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEec-----------CCcc--eeec------------------
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLG-----------KHTN--TIVG------------------   51 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~-----------~h~~--~i~~------------------   51 (89)
                      |-.+|++++||+||.+|++++.|-.+.+||...|..+..+.           +|+.  .|.+                  
T Consensus        64 H~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~  143 (405)
T KOG1273|consen   64 HVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV  143 (405)
T ss_pred             cccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee
Confidence            56689999999999999999999999999998876533211           1110  0000                  


Q ss_pred             ----------------------cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         52 ----------------------QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        52 ----------------------~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                                            +++.+|...|.+.++|.++-+++..+
T Consensus       144 Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~  191 (405)
T KOG1273|consen  144 LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASF  191 (405)
T ss_pred             ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeee
Confidence                                  79999999999999999887776644

>KOG2111|consensus

Probab=98.72  E-value=1.8e-07  Score=62.29  Aligned_cols=70  Identities=14%  Similarity=0.270  Sum_probs=59.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCC-cEEEEeCCCCeEeeEecC--Ccceeec-------cEEEEEeCCCCEEEEeCCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARG-NLTVYNHMTSKRVPVLGK--HTNTIVG-------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g-~v~iwd~~~~~~~~~~~~--h~~~i~~-------~~las~s~d~~v~iwd~~~~   71 (89)
                      -|...|.|++.+-+|..+|+++..| -|+|||..+|+.+.++..  ....|.|       .+||.+|+.|+|.|+.++..
T Consensus       179 AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  179 AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            3677899999999999999999999 589999999998888753  2234555       89999999999999999753

>KOG1445|consensus

Probab=98.71  E-value=1.1e-08  Score=73.52  Aligned_cols=72  Identities=22%  Similarity=0.286  Sum_probs=64.0

Q ss_pred             CcCCcEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          2 NLRYYIFLLQTSQV-GQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         2 ~~~~~i~~~~~spd-g~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      .|.+.|+++.|+|- ...||+++.|-+|.+||.++++....+.+|++.|..       ..+|+...||+|++|+.+.++.
T Consensus       675 ~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~  754 (1012)
T KOG1445|consen  675 IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ  754 (1012)
T ss_pred             cccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence            36678999999995 469999999999999999999888899999998876       8999999999999999986543

>KOG2445|consensus

Probab=98.70  E-value=1.5e-07  Score=62.58  Aligned_cols=67  Identities=12%  Similarity=0.197  Sum_probs=55.0

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCC--C--eEeeEecCCcceeec---------cEEEEEeCCCCEEEEeC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMT--S--KRVPVLGKHTNTIVG---------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~--~--~~~~~~~~h~~~i~~---------~~las~s~d~~v~iwd~   68 (89)
                      +|.|-|.++.|.+-|..+|+++.|+++.|||.+.  +  .+-..+..|.+.|..         +.+|+++.|+++.||.-
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE   90 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE   90 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence            4677799999999999999999999999999543  2  223345667776654         89999999999999986

>KOG0771|consensus

Probab=98.70  E-value=4.3e-08  Score=66.74  Aligned_cols=70  Identities=19%  Similarity=0.139  Sum_probs=58.7

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376          8 FLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus         8 ~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      -.++|++||..+++|..||.+++|+-.+...+..+..|.+.|.+       ++|++-+.| ..+||+++++..+..+.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            47899999999999999999999995555566667778888887       799999999 89999999985554443

>KOG0270|consensus

Probab=98.68  E-value=9.5e-08  Score=65.73  Aligned_cols=66  Identities=14%  Similarity=0.172  Sum_probs=59.0

Q ss_pred             CCcEEEEEEccCCC-EEEEEeCCCcEEEEeCCC-CeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCC
Q psy12376          4 RYYIFLLQTSQVGQ-VLAIGTARGNLTVYNHMT-SKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         4 ~~~i~~~~~spdg~-~la~g~~~g~v~iwd~~~-~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~   69 (89)
                      ...|..++|.|... .++++++||.|+-+|+|. ++.+..++.|.++|.+        ++++++|.|+.|.+|++.
T Consensus       329 ~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~  404 (463)
T KOG0270|consen  329 DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFD  404 (463)
T ss_pred             ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeec
Confidence            35688999999765 778899999999999986 6889999999999887        799999999999999996

>KOG3881|consensus

Probab=98.64  E-value=9.7e-08  Score=64.89  Aligned_cols=71  Identities=20%  Similarity=0.170  Sum_probs=60.8

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeE-ecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPV-LGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~-~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      .+++++...|+|+++.+|...|.+..||.++++.... +.+-.+.|+.       +++|+||.|..|+|+|+++.+.++
T Consensus       248 ~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  248 NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             CcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence            4689999999999999999999999999999987765 6666665544       699999999999999998855544

>KOG1539|consensus

Probab=98.64  E-value=4.2e-07  Score=66.56  Aligned_cols=83  Identities=20%  Similarity=0.282  Sum_probs=69.2

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +.+.|+++.-+|-=..+|+|..+|+|.+++++.++.+..++-..++|..        ..+|+|...|.+.+||++..+..
T Consensus       201 ~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~  280 (910)
T KOG1539|consen  201 FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI  280 (910)
T ss_pred             cccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee
Confidence            3567999999998889999999999999999999998888643466665        78999999999999999887777


Q ss_pred             eeeC-CCCCCCc
Q psy12376         75 PVLG-KHTKSKP   85 (89)
Q Consensus        75 ~~l~-~h~~~~~   85 (89)
                      ..+. .|...+.
T Consensus       281 ~v~~nah~~sv~  292 (910)
T KOG1539|consen  281 NVTRNAHYGSVT  292 (910)
T ss_pred             eeeeccccCCcc
Confidence            6654 7855543

>KOG0642|consensus

Probab=98.62  E-value=1.7e-07  Score=66.05  Aligned_cols=72  Identities=14%  Similarity=0.124  Sum_probs=58.5

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCC------CCe----EeeEecCCcceeec-------cEEEEEeCCCCEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHM------TSK----RVPVLGKHTNTIVG-------QVLAIGTARGNLT   64 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~------~~~----~~~~~~~h~~~i~~-------~~las~s~d~~v~   64 (89)
                      .|..+|.|+..++.++++.+|+-||+|+.|++.      ...    ....+.||.+.++.       ..|+++|.||+|+
T Consensus       342 aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr  421 (577)
T KOG0642|consen  342 AHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVR  421 (577)
T ss_pred             cccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEE
Confidence            478899999999999999999999999999543      221    23467889887754       7899999999999


Q ss_pred             EEeCCCCEE
Q psy12376         65 VYNHMTSKR   73 (89)
Q Consensus        65 iwd~~~~~~   73 (89)
                      +|+......
T Consensus       422 ~w~~~~~~~  430 (577)
T KOG0642|consen  422 LWEPTEESP  430 (577)
T ss_pred             eeccCCcCc
Confidence            999965443

>KOG0772|consensus

Probab=98.62  E-value=2.8e-07  Score=64.79  Aligned_cols=66  Identities=14%  Similarity=0.125  Sum_probs=54.3

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEe------------cCCcceeec--------cEEEEEeCCCCEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVL------------GKHTNTIVG--------QVLAIGTARGNLT   64 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~------------~~h~~~i~~--------~~las~s~d~~v~   64 (89)
                      ..|.+++||+.|.+|++.+.....+|+|....+.+...            .+|...+.|        +.|.+++.|++++
T Consensus       215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlR  294 (641)
T KOG0772|consen  215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLR  294 (641)
T ss_pred             cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEE
Confidence            45899999999999999999999999997765543332            357677777        7899999999999


Q ss_pred             EEeCCC
Q psy12376         65 VYNHMT   70 (89)
Q Consensus        65 iwd~~~   70 (89)
                      |||+..
T Consensus       295 iWdv~~  300 (641)
T KOG0772|consen  295 IWDVNN  300 (641)
T ss_pred             EEecCC
Confidence            999964

>KOG0307|consensus

Probab=98.61  E-value=4.7e-08  Score=72.89  Aligned_cols=81  Identities=16%  Similarity=0.226  Sum_probs=60.8

Q ss_pred             CcCCcEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEeeEec--CCcceeec--------cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQVGQ-VLAIGTARGNLTVYNHMTSKRVPVLG--KHTNTIVG--------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~-~la~g~~~g~v~iwd~~~~~~~~~~~--~h~~~i~~--------~~las~s~d~~v~iwd~~~   70 (89)
                      .|.+.|..+.|++.+. .||+|+++|+|.|||+..-+.-..+.  ...+.|.|        ..||+++.+|.+.|||++.
T Consensus       114 ~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~  193 (1049)
T KOG0307|consen  114 KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK  193 (1049)
T ss_pred             ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccC
Confidence            4778899999999765 99999999999999997643322221  12344555        6899999999999999987


Q ss_pred             CEEEeeeCCCCC
Q psy12376         71 SKRVPVLGKHTK   82 (89)
Q Consensus        71 ~~~~~~l~~h~~   82 (89)
                      ++.+-.+.-|.+
T Consensus       194 ~~pii~ls~~~~  205 (1049)
T KOG0307|consen  194 KKPIIKLSDTPG  205 (1049)
T ss_pred             CCcccccccCCC
Confidence            765555555544

>KOG2106|consensus

Probab=98.59  E-value=6.5e-07  Score=62.89  Aligned_cols=77  Identities=21%  Similarity=0.289  Sum_probs=62.3

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCC-CCEEEe
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHM-TSKRVP   75 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~-~~~~~~   75 (89)
                      .++..|+.|+|.| .+|+|+..|...+.|..+...+..-.. +.++.+       .+||.|+.|+.|+||.+. ++....
T Consensus       407 ~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~  484 (626)
T KOG2106|consen  407 EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS  484 (626)
T ss_pred             cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE
Confidence            4678899999999 999999999999999887544443333 566665       899999999999999995 677778


Q ss_pred             eeCCCCC
Q psy12376         76 VLGKHTK   82 (89)
Q Consensus        76 ~l~~h~~   82 (89)
                      ..++|..
T Consensus       485 r~~k~~g  491 (626)
T KOG2106|consen  485 RVGKCSG  491 (626)
T ss_pred             EeeeecC
Confidence            8888877

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.58  E-value=1.5e-07  Score=44.11  Aligned_cols=32  Identities=28%  Similarity=0.517  Sum_probs=28.7

Q ss_pred             CeEeeEecCCcceeec-------cEEEEEeCCCCEEEEe
Q psy12376         36 SKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYN   67 (89)
Q Consensus        36 ~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd   67 (89)
                      |+.+..+.+|...|.+       ++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4677889999999987       8999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0974|consensus

Probab=98.58  E-value=3.2e-07  Score=68.11  Aligned_cols=80  Identities=13%  Similarity=0.088  Sum_probs=65.9

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEee-EecCCcceeec-----cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVP-VLGKHTNTIVG-----QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~-~~~~h~~~i~~-----~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      +|.+.|..+.|+-||.++++.++|-++++|++.+++... ..-+|..++..     +++++++.|-+.++|+... ....
T Consensus       173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~-~~l~  251 (967)
T KOG0974|consen  173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNG-TQLE  251 (967)
T ss_pred             ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEeccc-ceeh
Confidence            678889999999999999999999999999999988766 44478887765     8999999999999997754 3334


Q ss_pred             eeCCCCC
Q psy12376         76 VLGKHTK   82 (89)
Q Consensus        76 ~l~~h~~   82 (89)
                      ....|..
T Consensus       252 ~y~~h~g  258 (967)
T KOG0974|consen  252 VYDEHSG  258 (967)
T ss_pred             hhhhhhh
Confidence            5555543

>KOG0307|consensus

Probab=98.56  E-value=7.4e-08  Score=71.86  Aligned_cols=66  Identities=23%  Similarity=0.397  Sum_probs=55.2

Q ss_pred             CcEEEEEEccCCCE----EEEEeCCCcEEEEeCCC---Ce---EeeEecCCcceeec--------cEEEEEeCCCCEEEE
Q psy12376          5 YYIFLLQTSQVGQV----LAIGTARGNLTVYNHMT---SK---RVPVLGKHTNTIVG--------QVLAIGTARGNLTVY   66 (89)
Q Consensus         5 ~~i~~~~~spdg~~----la~g~~~g~v~iwd~~~---~~---~~~~~~~h~~~i~~--------~~las~s~d~~v~iw   66 (89)
                      .....|+|++.|..    ||.|.+||.|.+||...   +.   .+..+..|++.|+.        +.||+|+.||.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            35789999998876    89999999999999765   22   24556779888876        799999999999999


Q ss_pred             eCCC
Q psy12376         67 NHMT   70 (89)
Q Consensus        67 d~~~   70 (89)
                      |+..
T Consensus       145 Dlnn  148 (1049)
T KOG0307|consen  145 DLNK  148 (1049)
T ss_pred             ccCC
Confidence            9964

>KOG1408|consensus

Probab=98.56  E-value=5.4e-07  Score=65.67  Aligned_cols=79  Identities=13%  Similarity=0.228  Sum_probs=69.1

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecC---Ccc-eee---c---cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGK---HTN-TIV---G---QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~---h~~-~i~---~---~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      .++.++..|..+++++++.|..|+|||+.+||..+.|.+   |.+ .|.   +   .|+|+.-.|+++.++|.-+|+++.
T Consensus       598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA  677 (1080)
T KOG1408|consen  598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA  677 (1080)
T ss_pred             eEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh
Confidence            488999999999999999999999999999999998875   422 332   2   899999999999999999999999


Q ss_pred             eeCCCCCCC
Q psy12376         76 VLGKHTKSK   84 (89)
Q Consensus        76 ~l~~h~~~~   84 (89)
                      .+-+|+.-+
T Consensus       678 ~m~GHsE~V  686 (1080)
T KOG1408|consen  678 QMTGHSEAV  686 (1080)
T ss_pred             hhcCcchhe
Confidence            999998653

>KOG0642|consensus

Probab=98.55  E-value=9.8e-08  Score=67.20  Aligned_cols=66  Identities=17%  Similarity=0.221  Sum_probs=56.9

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCC--------CeEeeEecCCcceeec-------cEEEEEeCCCCEEEEe
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMT--------SKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYN   67 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~--------~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd   67 (89)
                      |.+.|..++|+|....|++++.||.+.+|+...        -+.+..|.+|.++|.|       ..+.+|+-||+|+.|+
T Consensus       293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~  372 (577)
T KOG0642|consen  293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWN  372 (577)
T ss_pred             chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeec
Confidence            456788999999999999999999999999822        1346778899999988       7999999999999995


Q ss_pred             C
Q psy12376         68 H   68 (89)
Q Consensus        68 ~   68 (89)
                      +
T Consensus       373 ~  373 (577)
T KOG0642|consen  373 L  373 (577)
T ss_pred             c
Confidence            4

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.54  E-value=2.1e-06  Score=55.62  Aligned_cols=81  Identities=22%  Similarity=0.389  Sum_probs=62.1

Q ss_pred             cCCcEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEee-EecCCcce-eec-----cEEEEEeCCCCEEEEeCCCCEE-
Q psy12376          3 LRYYIFLLQTSQVGQ-VLAIGTARGNLTVYNHMTSKRVP-VLGKHTNT-IVG-----QVLAIGTARGNLTVYNHMTSKR-   73 (89)
Q Consensus         3 ~~~~i~~~~~spdg~-~la~g~~~g~v~iwd~~~~~~~~-~~~~h~~~-i~~-----~~las~s~d~~v~iwd~~~~~~-   73 (89)
                      |...+.+++|+|++. .+++++.|+.+.+||...++.+. .+.+|... +.+     .++++++.|+.+++|+...... 
T Consensus       197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  276 (466)
T COG2319         197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSL  276 (466)
T ss_pred             CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcE
Confidence            567799999999998 55555899999999988887777 67788776 322     5888999999999999985553 


Q ss_pred             EeeeCCCCCC
Q psy12376         74 VPVLGKHTKS   83 (89)
Q Consensus        74 ~~~l~~h~~~   83 (89)
                      ...+.+|...
T Consensus       277 ~~~~~~~~~~  286 (466)
T COG2319         277 LRTLSGHSSS  286 (466)
T ss_pred             EEEEecCCcc
Confidence            3333555444

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.53  E-value=1.5e-06  Score=55.83  Aligned_cols=70  Identities=10%  Similarity=0.069  Sum_probs=50.4

Q ss_pred             EEEEEccCCCEEEE-EeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEE-eCCCCEEEEeCCCCEEEeeeC
Q psy12376          8 FLLQTSQVGQVLAI-GTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIG-TARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus         8 ~~~~~spdg~~la~-g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~-s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      ..++|+|+|+++++ ...++.+.+||..+++....+.. ...+.+       ++|+++ +.++.|.+||+++++.+..+.
T Consensus       210 ~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       210 VGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV-GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             cceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe-CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            46889999998554 34567899999998887655432 222322       566665 579999999999988766653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0321|consensus

Probab=98.53  E-value=1.7e-07  Score=67.07  Aligned_cols=74  Identities=15%  Similarity=0.199  Sum_probs=53.0

Q ss_pred             CCcCCcEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeE-------eeEecCCcc--------------------eeec-
Q psy12376          1 MNLRYYIFLLQTSQVG-QVLAIGTARGNLTVYNHMTSKR-------VPVLGKHTN--------------------TIVG-   51 (89)
Q Consensus         1 ~~~~~~i~~~~~spdg-~~la~g~~~g~v~iwd~~~~~~-------~~~~~~h~~--------------------~i~~-   51 (89)
                      ++|...+-+++|.|+. ..|++|+.||.|.|||++-...       .+....|+.                    .|.. 
T Consensus       141 ~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ss  220 (720)
T KOG0321|consen  141 LGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSS  220 (720)
T ss_pred             cccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeee
Confidence            4678889999999965 5899999999999999975431       011112221                    1111 


Q ss_pred             ---------cEEEEEeC-CCCEEEEeCCCCEEE
Q psy12376         52 ---------QVLAIGTA-RGNLTVYNHMTSKRV   74 (89)
Q Consensus        52 ---------~~las~s~-d~~v~iwd~~~~~~~   74 (89)
                               ..||++|. |+.|+|||++.....
T Consensus       221 vTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~  253 (720)
T KOG0321|consen  221 VTVVLFKDESTLASAGAADSTIKVWDLRKNYTA  253 (720)
T ss_pred             eEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence                     68899988 999999999865543

>KOG0650|consensus

Probab=98.52  E-value=7.7e-07  Score=63.54  Aligned_cols=65  Identities=18%  Similarity=0.247  Sum_probs=50.1

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec---------cEEEEEeCCCCEEEEeC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG---------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~---------~~las~s~d~~v~iwd~   68 (89)
                      +|.+.+.+++..|.|++||+|++||+|+||.+.+|++++.++- .+.|+|         ..||.+-.+. +.|-|.
T Consensus       398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp  471 (733)
T KOG0650|consen  398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNP  471 (733)
T ss_pred             ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCc-eEEeCc
Confidence            6888999999999999999999999999999999999887653 234554         4555544333 555444

>KOG1409|consensus

Probab=98.52  E-value=6.9e-07  Score=60.27  Aligned_cols=72  Identities=14%  Similarity=0.133  Sum_probs=61.0

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE-eeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR-VPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~-~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      +|.+++++++|.|....|.+|..|..+.+||+-.++. ...+++|...+..       ..+.+++.||.|.+||.+-...
T Consensus       195 ~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  195 GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV  274 (404)
T ss_pred             CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence            4678899999999999999999999999999865443 4567889888776       7899999999999999964433

>KOG1523|consensus

Probab=98.51  E-value=6e-07  Score=60.00  Aligned_cols=72  Identities=13%  Similarity=0.173  Sum_probs=61.6

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCC---eEeeEecCCcceeec-------cEEEEEeCCCCEEEEeC-CCCE
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTS---KRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNH-MTSK   72 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~---~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~-~~~~   72 (89)
                      ..+|+|.+|++|+..+|.+..+..|.||.....   +..+.+..|...+++       +.|++|+.|...++|.. .+++
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            467999999999999999999999999998654   456788889888876       79999999999999999 5555


Q ss_pred             EEe
Q psy12376         73 RVP   75 (89)
Q Consensus        73 ~~~   75 (89)
                      -.+
T Consensus        90 Wkp   92 (361)
T KOG1523|consen   90 WKP   92 (361)
T ss_pred             ecc
Confidence            444

>KOG0649|consensus

Probab=98.50  E-value=9.6e-07  Score=57.53  Aligned_cols=86  Identities=15%  Similarity=0.193  Sum_probs=61.1

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCc--c--------eeec-----cEEEEEeCCCCEEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHT--N--------TIVG-----QVLAIGTARGNLTVY   66 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~--~--------~i~~-----~~las~s~d~~v~iw   66 (89)
                      +|+|.+-++.--.....+++|+.||++++||.++++.+..+..++  .        .|-|     ..+++|+ ...+.+|
T Consensus       154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslw  232 (325)
T KOG0649|consen  154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLW  232 (325)
T ss_pred             CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEE
Confidence            578888888875545588999999999999999998877665432  2        2333     6777664 4569999


Q ss_pred             eCCCCEEEe--eeCCCCCCCcCCC
Q psy12376         67 NHMTSKRVP--VLGKHTKSKPSTE   88 (89)
Q Consensus        67 d~~~~~~~~--~l~~h~~~~~~~~   88 (89)
                      +++..+...  .+.+|...+.|.|
T Consensus       233 hLrsse~t~vfpipa~v~~v~F~~  256 (325)
T KOG0649|consen  233 HLRSSESTCVFPIPARVHLVDFVD  256 (325)
T ss_pred             eccCCCceEEEecccceeEeeeec
Confidence            998665544  4467666665544

>KOG2695|consensus

Probab=98.49  E-value=3.1e-07  Score=62.01  Aligned_cols=76  Identities=14%  Similarity=0.089  Sum_probs=61.6

Q ss_pred             cCCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeE---eeEecCCcce---eec------cEEEEEeCCCCEEEEeCC
Q psy12376          3 LRYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMTSKR---VPVLGKHTNT---IVG------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         3 ~~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~~~~---~~~~~~h~~~---i~~------~~las~s~d~~v~iwd~~   69 (89)
                      |+..|++++--. ++++|++.+.+|+|.+||.+--++   +..+.+|...   +..      ..++++++|-..+||.++
T Consensus       297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence            556678877666 788999999999999999875444   8899998652   222      789999999999999999


Q ss_pred             CCEEEeeeC
Q psy12376         70 TSKRVPVLG   78 (89)
Q Consensus        70 ~~~~~~~l~   78 (89)
                      +|..+.++.
T Consensus       377 ~ghLl~tip  385 (425)
T KOG2695|consen  377 SGHLLCTIP  385 (425)
T ss_pred             cCceeeccC
Confidence            998887653

>KOG0290|consensus

Probab=98.49  E-value=8.1e-07  Score=58.96  Aligned_cols=73  Identities=11%  Similarity=0.118  Sum_probs=60.4

Q ss_pred             cCCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCe---EeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCC
Q psy12376          3 LRYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMTSK---RVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         3 ~~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~~~---~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~   70 (89)
                      +..++++..|.- |-++|.+++-|-+..|||+.+|.   ...++-.|.++|..        ..|||.|.||+|+++|++.
T Consensus       149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~  228 (364)
T KOG0290|consen  149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS  228 (364)
T ss_pred             cCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecc
Confidence            346789999996 66799999999999999998763   35677789888876        7999999999999999986


Q ss_pred             CEEEe
Q psy12376         71 SKRVP   75 (89)
Q Consensus        71 ~~~~~   75 (89)
                      -+...
T Consensus       229 leHST  233 (364)
T KOG0290|consen  229 LEHST  233 (364)
T ss_pred             cccce
Confidence            55433

>KOG2048|consensus

Probab=98.48  E-value=1.8e-06  Score=62.09  Aligned_cols=71  Identities=17%  Similarity=0.266  Sum_probs=59.8

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEe--eEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRV--PVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~--~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      ..|++++.+|.+..+++|++||.++.+++..++..  +.+...++++.+       ..+|+|+.||-|++||+..+...+
T Consensus       111 g~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~  190 (691)
T KOG2048|consen  111 GAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH  190 (691)
T ss_pred             cceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE
Confidence            56999999999999999999999999988877642  345556678877       569999999999999998877666

>KOG1007|consensus

Probab=98.47  E-value=5.8e-07  Score=59.64  Aligned_cols=65  Identities=14%  Similarity=0.152  Sum_probs=56.0

Q ss_pred             cEEEEEEccCCC-EEEEEeCCCcEEEEeCCC-CeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCC
Q psy12376          6 YIFLLQTSQVGQ-VLAIGTARGNLTVYNHMT-SKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         6 ~i~~~~~spdg~-~la~g~~~g~v~iwd~~~-~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~   70 (89)
                      .+..+.|.|+-+ +||++++||.|++||.+. ...+..+.+|...+.+        .++.++|.|..|.+|....
T Consensus       216 ~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  216 RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence            378899999876 789999999999999975 5567888999887776        8999999999999999854

>KOG1334|consensus

Probab=98.47  E-value=7.9e-08  Score=66.97  Aligned_cols=68  Identities=12%  Similarity=0.233  Sum_probs=57.0

Q ss_pred             EEEE-EEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          7 IFLL-QTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         7 i~~~-~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      |-++ -|.|..+|+++|++.|.|.||+..+++.++.+.+-...|+|       ..||+.+.|..|+||...+.++.
T Consensus       396 VKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~  471 (559)
T KOG1334|consen  396 VKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERA  471 (559)
T ss_pred             cceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccccc
Confidence            4444 36688899999999999999999999988888775568888       79999999999999999655443

>KOG0771|consensus

Probab=98.43  E-value=2.9e-06  Score=58.05  Aligned_cols=34  Identities=24%  Similarity=0.071  Sum_probs=31.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTS   36 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~   36 (89)
                      .|..+|-++.|||||++||+-+.| ...||+.++|
T Consensus       184 ~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g  217 (398)
T KOG0771|consen  184 AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG  217 (398)
T ss_pred             hhcCccccceeCCCCcEEEEecCC-ceEEEEeccC
Confidence            466789999999999999999999 9999999988

>KOG2096|consensus

Probab=98.42  E-value=7e-07  Score=59.95  Aligned_cols=64  Identities=14%  Similarity=0.214  Sum_probs=52.9

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeC---CCCe-----EeeEecCCcceeec-------cEEEEEeCCCCEEEEeCC
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNH---MTSK-----RVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~---~~~~-----~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~   69 (89)
                      .-+..+.||+|+|+|+++-...|.+|.+   +.|.     .+..+.+|+..|..       ..+++.|.||+.+|||.+
T Consensus       230 ~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  230 SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            3466899999999999999999999996   2332     24467899998876       799999999999999984

>KOG1009|consensus

Probab=98.42  E-value=3.7e-07  Score=62.40  Aligned_cols=74  Identities=15%  Similarity=0.223  Sum_probs=62.6

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|.+.++.++|+||+.++++++.|..+++||...|.....+..|..-+.-       +++++=+.|...+++.+...++.
T Consensus       121 ~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~  200 (434)
T KOG1009|consen  121 GHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVI  200 (434)
T ss_pred             ccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeee
Confidence            47788999999999999999999999999999999998888888764432       89999999998888887654444


Q ss_pred             e
Q psy12376         75 P   75 (89)
Q Consensus        75 ~   75 (89)
                      +
T Consensus       201 ~  201 (434)
T KOG1009|consen  201 K  201 (434)
T ss_pred             e
Confidence            3

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.37  E-value=6.1e-06  Score=58.61  Aligned_cols=69  Identities=19%  Similarity=0.337  Sum_probs=51.9

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcc---eeec----cEEEEEeCCCCEEEEeCCCCE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTN---TIVG----QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~---~i~~----~~las~s~d~~v~iwd~~~~~   72 (89)
                      .++..+.+++++|+.+.|+.|+.||+|.+||...+-.  .+....-   -+..    .+++.|+..|.+.+||+.-+.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            4667899999999999999999999999999876532  1111110   0111    689999999999999996443

>KOG2110|consensus

Probab=98.36  E-value=6.5e-06  Score=55.88  Aligned_cols=75  Identities=15%  Similarity=0.328  Sum_probs=62.3

Q ss_pred             cEEEEEEccCCCEEEEE--eCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCC-EEEEeCCCCEEEe
Q psy12376          6 YIFLLQTSQVGQVLAIG--TARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGN-LTVYNHMTSKRVP   75 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g--~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~-v~iwd~~~~~~~~   75 (89)
                      .+.++++++.+.+||.-  ...|.|.+||..+-+.+..+..|++.+-|       .+||+||+.|+ |+|+.+.+|++..
T Consensus       131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~  210 (391)
T KOG2110|consen  131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY  210 (391)
T ss_pred             ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee
Confidence            36666666777799854  45889999999998889999999999888       89999999997 5899999998888


Q ss_pred             eeCCC
Q psy12376         76 VLGKH   80 (89)
Q Consensus        76 ~l~~h   80 (89)
                      .+.+-
T Consensus       211 eFRRG  215 (391)
T KOG2110|consen  211 EFRRG  215 (391)
T ss_pred             eeeCC
Confidence            77543

>KOG1063|consensus

Probab=98.36  E-value=1.9e-06  Score=62.19  Aligned_cols=69  Identities=17%  Similarity=0.263  Sum_probs=60.8

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARG-----NLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g-----~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~   69 (89)
                      +|..+|++++-+|+|+++|+++...     .|.+|+..+...+..+.+|.-.|+-       ++|++.|+|+++.+|+..
T Consensus       523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~  602 (764)
T KOG1063|consen  523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQ  602 (764)
T ss_pred             cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeee
Confidence            5777899999999999999998754     6899999998888889999887765       899999999999999985


Q ss_pred             C
Q psy12376         70 T   70 (89)
Q Consensus        70 ~   70 (89)
                      .
T Consensus       603 ~  603 (764)
T KOG1063|consen  603 E  603 (764)
T ss_pred             c
Confidence            3

>KOG0322|consensus

Probab=98.35  E-value=2.1e-06  Score=56.33  Aligned_cols=36  Identities=22%  Similarity=0.276  Sum_probs=32.8

Q ss_pred             cEEEEEeCCCCEEEEeCCCCEEEeeeCCCCCCCcCC
Q psy12376         52 QVLAIGTARGNLTVYNHMTSKRVPVLGKHTKSKPST   87 (89)
Q Consensus        52 ~~las~s~d~~v~iwd~~~~~~~~~l~~h~~~~~~~   87 (89)
                      +.+|+++.|+-++||+-++...+..|.-|+..+++.
T Consensus       264 KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~v  299 (323)
T KOG0322|consen  264 KILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAV  299 (323)
T ss_pred             cEEeecccCCcEEEEEeccCCchhhhhhhhcceeEE
Confidence            899999999999999999999999999999887753

>KOG4328|consensus

Probab=98.34  E-value=3.5e-06  Score=58.50  Aligned_cols=70  Identities=16%  Similarity=0.248  Sum_probs=56.6

Q ss_pred             CCcEEEEEEccCC--CEEEEEeCCCcEEEEeCCCC----eEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCC
Q psy12376          4 RYYIFLLQTSQVG--QVLAIGTARGNLTVYNHMTS----KRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         4 ~~~i~~~~~spdg--~~la~g~~~g~v~iwd~~~~----~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~   69 (89)
                      ...|++++|+|.-  +.+|+|+.-|.|-+||..+.    ..+..+.+|..+|.+        .++.+.|.||++++=|++
T Consensus       186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~  265 (498)
T KOG4328|consen  186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE  265 (498)
T ss_pred             ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence            4579999999964  58999999999999999532    235567789887776        788999999999999997


Q ss_pred             CCEE
Q psy12376         70 TSKR   73 (89)
Q Consensus        70 ~~~~   73 (89)
                      .+..
T Consensus       266 ~~i~  269 (498)
T KOG4328|consen  266 GNIS  269 (498)
T ss_pred             chhh
Confidence            6543

>KOG1538|consensus

Probab=98.33  E-value=4.4e-06  Score=60.77  Aligned_cols=33  Identities=12%  Similarity=0.290  Sum_probs=31.1

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHM   34 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~   34 (89)
                      +|+|.|++++||.||+.+|+|+.|..|.+|+..
T Consensus        51 gHKDtVycVAys~dGkrFASG~aDK~VI~W~~k   83 (1081)
T KOG1538|consen   51 GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK   83 (1081)
T ss_pred             cccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence            588999999999999999999999999999865

>KOG2919|consensus

Probab=98.33  E-value=3.2e-06  Score=56.88  Aligned_cols=76  Identities=24%  Similarity=0.364  Sum_probs=60.8

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeC-CCCeEeeEec-------CCcceeec--------cEEEEEeCCCCEEEEeCCCC
Q psy12376          8 FLLQTSQVGQVLAIGTARGNLTVYNH-MTSKRVPVLG-------KHTNTIVG--------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         8 ~~~~~spdg~~la~g~~~g~v~iwd~-~~~~~~~~~~-------~h~~~i~~--------~~las~s~d~~v~iwd~~~~   71 (89)
                      -+++|+|||++|.+|. ...|++||+ +.|+....+.       +..+.|.|        +.+|.|+.-..+-||+-...
T Consensus       162 hsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~  240 (406)
T KOG2919|consen  162 HSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR  240 (406)
T ss_pred             eeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC
Confidence            4899999999999986 459999998 7787644332       23445555        68999999999999998888


Q ss_pred             EEEeeeCCCCCCC
Q psy12376         72 KRVPVLGKHTKSK   84 (89)
Q Consensus        72 ~~~~~l~~h~~~~   84 (89)
                      ....++++|.+.|
T Consensus       241 ~pl~llggh~gGv  253 (406)
T KOG2919|consen  241 RPLQLLGGHGGGV  253 (406)
T ss_pred             CceeeecccCCCe
Confidence            8888999998765

>KOG2106|consensus

Probab=98.32  E-value=2.8e-06  Score=59.79  Aligned_cols=62  Identities=15%  Similarity=0.344  Sum_probs=54.0

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec------cEEEEEeCCCCEEEEeC
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~------~~las~s~d~~v~iwd~   68 (89)
                      -|.|++|.++|.. ++|..+|.|.||+..+.+..++...|.+.|.+      ..|.||+.|+.|..||-
T Consensus       248 ~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~  315 (626)
T KOG2106|consen  248 FVLCVTFLENGDV-ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDD  315 (626)
T ss_pred             EEEEEEEcCCCCE-EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccc
Confidence            4899999999864 78999999999999888777766699998877      67888999999999994

>KOG1587|consensus

Probab=98.32  E-value=3.9e-06  Score=60.10  Aligned_cols=67  Identities=10%  Similarity=0.110  Sum_probs=51.5

Q ss_pred             CCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeE--eeE----ecCCcceeec---------cEEEEEeCCCCEEEEe
Q psy12376          4 RYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMTSKR--VPV----LGKHTNTIVG---------QVLAIGTARGNLTVYN   67 (89)
Q Consensus         4 ~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~~~~--~~~----~~~h~~~i~~---------~~las~s~d~~v~iwd   67 (89)
                      +.+|+++.|+| +...+|.|+.+|.|.+||.+.+..  ...    ...|..++..         .-|+++|.||.|..|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            45799999999 567889999999999999987654  222    2346665554         3488888999999998


Q ss_pred             CCC
Q psy12376         68 HMT   70 (89)
Q Consensus        68 ~~~   70 (89)
                      ++.
T Consensus       322 ~~~  324 (555)
T KOG1587|consen  322 TDM  324 (555)
T ss_pred             ccc
Confidence            863

>KOG4328|consensus

Probab=98.31  E-value=1.1e-06  Score=60.91  Aligned_cols=81  Identities=20%  Similarity=0.186  Sum_probs=61.2

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE-eeEecCCcceeec--------cEEEEEeCCCCEEEEeCCC--CEEE
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR-VPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMT--SKRV   74 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~-~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~--~~~~   74 (89)
                      .++.+.|+.+...++.+..=|.+.+||.++++. ...+.-|+..|..        .+||+||.|++++|||++.  ++..
T Consensus       281 ~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s  360 (498)
T KOG4328|consen  281 WFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS  360 (498)
T ss_pred             eeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC
Confidence            478899999888888888888999999987544 5555567666654        7999999999999999974  3332


Q ss_pred             --eeeCCCCCCCcC
Q psy12376         75 --PVLGKHTKSKPS   86 (89)
Q Consensus        75 --~~l~~h~~~~~~   86 (89)
                        -....|...|++
T Consensus       361 p~lst~~HrrsV~s  374 (498)
T KOG4328|consen  361 PFLSTLPHRRSVNS  374 (498)
T ss_pred             cceecccccceeee
Confidence              223567777665

>KOG4547|consensus

Probab=98.30  E-value=7.7e-06  Score=57.92  Aligned_cols=83  Identities=8%  Similarity=-0.007  Sum_probs=70.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|...+.++.|+.+--+|.+++.|+.+..|+...++.++.++..+..+..       +++++||.  .|.+||+++++.+
T Consensus       100 ~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~--~ik~~~~~~kevv  177 (541)
T KOG4547|consen  100 KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASR--QIKVLDIETKEVV  177 (541)
T ss_pred             CCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccc--eEEEEEccCceEE
Confidence            46778999999999889999999999999999998888887765443322       68888875  4999999999999


Q ss_pred             eeeCCCCCCCcC
Q psy12376         75 PVLGKHTKSKPS   86 (89)
Q Consensus        75 ~~l~~h~~~~~~   86 (89)
                      ..+.+|...+++
T Consensus       178 ~~ftgh~s~v~t  189 (541)
T KOG4547|consen  178 ITFTGHGSPVRT  189 (541)
T ss_pred             EEecCCCcceEE
Confidence            999999988765

>KOG1188|consensus

Probab=98.29  E-value=1.5e-06  Score=58.52  Aligned_cols=59  Identities=12%  Similarity=0.248  Sum_probs=48.1

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec---------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376         17 QVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG---------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus        17 ~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~---------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      ..+|++..+|.|++||..+++.+..+.++...+..         ..+.+|+.||+|++||++......
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a  108 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA  108 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh
Confidence            35899999999999999999888888876553322         678999999999999998765444

>KOG4227|consensus

Probab=98.27  E-value=3.4e-06  Score=58.19  Aligned_cols=76  Identities=24%  Similarity=0.190  Sum_probs=60.9

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCC------eEeeEec-CCcceeec-------cEEEEEeCCCCEEEEe
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTS------KRVPVLG-KHTNTIVG-------QVLAIGTARGNLTVYN   67 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~------~~~~~~~-~h~~~i~~-------~~las~s~d~~v~iwd   67 (89)
                      +|.+.|.+++||.++++||+|++|-.+++|++...      |.+.... .|.+.|.|       .++.+|+.+++|..-|
T Consensus        54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD  133 (609)
T KOG4227|consen   54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD  133 (609)
T ss_pred             hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence            56778999999999999999999999999998642      2233333 35467777       7899999999999999


Q ss_pred             CCCCEEEeee
Q psy12376         68 HMTSKRVPVL   77 (89)
Q Consensus        68 ~~~~~~~~~l   77 (89)
                      +++.+.+-..
T Consensus       134 iEt~qsi~V~  143 (609)
T KOG4227|consen  134 IETKQSIYVA  143 (609)
T ss_pred             cccceeeeee
Confidence            9987776544

>KOG1524|consensus

Probab=98.26  E-value=1.7e-06  Score=61.40  Aligned_cols=79  Identities=10%  Similarity=0.100  Sum_probs=57.7

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE-----------------------------------------eeE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR-----------------------------------------VPV   41 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~-----------------------------------------~~~   41 (89)
                      |...+.+-.|+|||.-|++.+.||.|++|.. +|-.                                         +-.
T Consensus       103 H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~  181 (737)
T KOG1524|consen  103 HAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIR  181 (737)
T ss_pred             hhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeE
Confidence            4456788899999999999999999999974 3311                                         112


Q ss_pred             ecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEeeeCCCCCC
Q psy12376         42 LGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPVLGKHTKS   83 (89)
Q Consensus        42 ~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~l~~h~~~   83 (89)
                      +..|.+.|.|       +++++|++|-...|||-. |..+.....|.-.
T Consensus       182 WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~  229 (737)
T KOG1524|consen  182 WRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA  229 (737)
T ss_pred             EeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence            4456666665       899999999999999975 4444444445433

>KOG0974|consensus

Probab=98.26  E-value=2.9e-06  Score=63.24  Aligned_cols=76  Identities=13%  Similarity=0.159  Sum_probs=60.1

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEe-eeCCC
Q psy12376          9 LLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVP-VLGKH   80 (89)
Q Consensus         9 ~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~-~l~~h   80 (89)
                      -+.++++--++++|+.-+.|.+|+...-+.-..+.+|.+.|..       .++++.|+|.++++|++++.+... ..-+|
T Consensus       138 ~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH  217 (967)
T KOG0974|consen  138 IIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH  217 (967)
T ss_pred             EEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc
Confidence            3456777779999999999999998632222247789887665       899999999999999999887665 66688


Q ss_pred             CCCC
Q psy12376         81 TKSK   84 (89)
Q Consensus        81 ~~~~   84 (89)
                      +.++
T Consensus       218 saRv  221 (967)
T KOG0974|consen  218 SARV  221 (967)
T ss_pred             ccee
Confidence            8764

>KOG4378|consensus

Probab=98.23  E-value=9.8e-06  Score=57.19  Aligned_cols=82  Identities=10%  Similarity=0.200  Sum_probs=63.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcc-eee--c------cEEEEEeCCCCEEEEeCCCC-
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTN-TIV--G------QVLAIGTARGNLTVYNHMTS-   71 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~-~i~--~------~~las~s~d~~v~iwd~~~~-   71 (89)
                      +|++.|+++.+.-..++||+++..|.|.|....++..-..+.-..+ .++  .      -+|.+++++|.|.+||+... 
T Consensus       119 dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s  198 (673)
T KOG4378|consen  119 DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS  198 (673)
T ss_pred             CCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC
Confidence            5778899999999999999999999999999988776555542222 121  1      68999999999999999643 


Q ss_pred             EEEeeeCCCCCC
Q psy12376         72 KRVPVLGKHTKS   83 (89)
Q Consensus        72 ~~~~~l~~h~~~   83 (89)
                      ...+....|+.+
T Consensus       199 p~~~~~~~HsAP  210 (673)
T KOG4378|consen  199 PIFHASEAHSAP  210 (673)
T ss_pred             cccchhhhccCC
Confidence            344556777765

>smart00320 WD40 WD40 repeats

Probab=98.22  E-value=4.2e-06  Score=37.01  Aligned_cols=30  Identities=17%  Similarity=0.215  Sum_probs=27.0

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEe
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYN   32 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd   32 (89)
                      +...+.++.|+|++.++++++.|+.+++|+
T Consensus        11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456799999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4378|consensus

Probab=98.20  E-value=6.3e-06  Score=58.14  Aligned_cols=81  Identities=16%  Similarity=0.163  Sum_probs=61.9

Q ss_pred             cCCcEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEeeEecCCcceee------c-cEEEEEeCCCCEEEEeCCC-CEE
Q psy12376          3 LRYYIFLLQTSQVGQ-VLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV------G-QVLAIGTARGNLTVYNHMT-SKR   73 (89)
Q Consensus         3 ~~~~i~~~~~spdg~-~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~------~-~~las~s~d~~v~iwd~~~-~~~   73 (89)
                      |..+...++|||..+ .|++-+.|..|.+||++..+...++.. ..++.      | .+|+.|...|.|..||++. ...
T Consensus       207 HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P  285 (673)
T KOG4378|consen  207 HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP  285 (673)
T ss_pred             ccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-cCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence            567788999999765 778889999999999987665444431 12222      2 7999999999999999984 556


Q ss_pred             EeeeCCCCCCC
Q psy12376         74 VPVLGKHTKSK   84 (89)
Q Consensus        74 ~~~l~~h~~~~   84 (89)
                      +..+-.|...|
T Consensus       286 v~v~sah~~sV  296 (673)
T KOG4378|consen  286 VAVRSAHDASV  296 (673)
T ss_pred             ceEeeecccce
Confidence            67777888764

>KOG1272|consensus

Probab=98.20  E-value=1.5e-06  Score=60.60  Aligned_cols=71  Identities=7%  Similarity=0.190  Sum_probs=60.4

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEee
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~   76 (89)
                      .+..+...|-...+-+|..+|+|.+|.....+.+.++.-|.++|.+       .|+||++.|..+.|||++.-...+.
T Consensus       253 ~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t  330 (545)
T KOG1272|consen  253 RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHT  330 (545)
T ss_pred             ccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccce
Confidence            3566788887788999999999999999988887777789888877       8999999999999999986554443

>KOG0280|consensus

Probab=98.18  E-value=9.2e-06  Score=53.99  Aligned_cols=67  Identities=15%  Similarity=0.192  Sum_probs=52.0

Q ss_pred             cCCcEEEEEEccC-CCEEEEEeCCCcEEEEeCC-CCeEeeE-ecCCcceeec--------cEEEEEeCCCCEEEEeCC
Q psy12376          3 LRYYIFLLQTSQV-GQVLAIGTARGNLTVYNHM-TSKRVPV-LGKHTNTIVG--------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         3 ~~~~i~~~~~spd-g~~la~g~~~g~v~iwd~~-~~~~~~~-~~~h~~~i~~--------~~las~s~d~~v~iwd~~   69 (89)
                      |..+++-+.|+-. -+.+.+|++||.+.-||+| .++.+.. .+-|...|.+        .++++|+.|..|++||.+
T Consensus       164 He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR  241 (339)
T KOG0280|consen  164 HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTR  241 (339)
T ss_pred             cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehh
Confidence            4556777788753 4688999999999999999 4444433 3456666655        599999999999999997

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=98.16  E-value=1.3e-05  Score=39.58  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=30.0

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR   38 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~   38 (89)
                      +..|.+++|+|....||.++.+|.|.++.. +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            457999999999999999999999999988 5543

>KOG1963|consensus

Probab=98.11  E-value=1.3e-05  Score=58.87  Aligned_cols=76  Identities=21%  Similarity=0.319  Sum_probs=59.1

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCC--Ce--EeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCC
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMT--SK--RVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~--~~--~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~   71 (89)
                      |...+++.++||.+.++|+|..||.|.+|.--.  +.  ..+.+.=|...|.+       .+|.||+..+-+.+|.++++
T Consensus       204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~  283 (792)
T KOG1963|consen  204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG  283 (792)
T ss_pred             hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence            455589999999999999999999999998543  21  23444446666666       89999999999999999988


Q ss_pred             EEEeeeCC
Q psy12376         72 KRVPVLGK   79 (89)
Q Consensus        72 ~~~~~l~~   79 (89)
                      ++ +.|++
T Consensus       284 ~k-qfLPR  290 (792)
T KOG1963|consen  284 KK-QFLPR  290 (792)
T ss_pred             Cc-ccccc
Confidence            73 44443

>KOG1272|consensus

Probab=98.11  E-value=8.8e-06  Score=56.83  Aligned_cols=68  Identities=7%  Similarity=0.090  Sum_probs=50.3

Q ss_pred             CCcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecC-Ccc-eeec--cEEEEEeCCCCEEEEeC
Q psy12376          1 MNLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGK-HTN-TIVG--QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         1 ~~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~-h~~-~i~~--~~las~s~d~~v~iwd~   68 (89)
                      ++|+.+|.++++.++|.++|+.+.|..+.|||++..+.+..+.. |.. .+.-  +-+.++|....|.||--
T Consensus       290 LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d  361 (545)
T KOG1272|consen  290 LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWKD  361 (545)
T ss_pred             HhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeeehh
Confidence            36899999999999999999999999999999998765554432 322 1211  33444456667999975

>KOG1310|consensus

Probab=98.11  E-value=1.1e-05  Score=57.62  Aligned_cols=58  Identities=16%  Similarity=0.335  Sum_probs=51.0

Q ss_pred             ccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCC
Q psy12376         13 SQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus        13 spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~   70 (89)
                      ...|+++++|++||...+|+..+++....+.+-...+.|       ..+|+.+.|.+|+||+...
T Consensus       633 GqrgeyiasgSddgr~fiwek~tg~i~av~~gdssivnciqghP~~~~latSgiDstiKIwsp~a  697 (758)
T KOG1310|consen  633 GQRGEYIASGSDDGRFFIWEKLTGSILAVIHGDSSIVNCIQGHPRCPTLATSGIDSTIKIWSPEA  697 (758)
T ss_pred             ccCCCeeeEecCCCceEEeecCCcceEEEeeCchhheeeccCCCCCceeeeccCccceEEecccC
Confidence            457899999999999999999999988888877777777       6899999999999999753

>KOG0644|consensus

Probab=98.09  E-value=7.8e-07  Score=65.58  Aligned_cols=68  Identities=18%  Similarity=0.176  Sum_probs=61.8

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec---cEEEEEeCCCCEEEEeCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG---QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~---~~las~s~d~~v~iwd~~   69 (89)
                      +|...|+.++.+....++|+++.|..|++|-..++..+..+.+|++.|++   .=+++.+.||++++||-+
T Consensus       230 Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  230 GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRASSSDDGTCRIWDAR  300 (1113)
T ss_pred             CCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccccCCCCCceEecccc
Confidence            56777999999999999999999999999999999999999999999988   445578999999999987

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.06  E-value=0.00011  Score=51.04  Aligned_cols=71  Identities=13%  Similarity=0.144  Sum_probs=47.8

Q ss_pred             CCcEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCeEeeEecCCcceeec-------c-EEEEEeCCCC--EEEEeCCC
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTA---RGNLTVYNHMTSKRVPVLGKHTNTIVG-------Q-VLAIGTARGN--LTVYNHMT   70 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~---~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~-~las~s~d~~--v~iwd~~~   70 (89)
                      ...+.+.+|||||+.|+..+.   +..|.+||..+++. ..+..+.+.+.+       + ++++.+.++.  |++||+++
T Consensus       201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~  279 (435)
T PRK05137        201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS  279 (435)
T ss_pred             CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC
Confidence            456889999999999988764   46899999988764 233333332222       3 4456666665  77779887


Q ss_pred             CEEEe
Q psy12376         71 SKRVP   75 (89)
Q Consensus        71 ~~~~~   75 (89)
                      +....
T Consensus       280 ~~~~~  284 (435)
T PRK05137        280 GTTTR  284 (435)
T ss_pred             CceEE
Confidence            66544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.06  E-value=5.5e-05  Score=52.45  Aligned_cols=71  Identities=20%  Similarity=0.155  Sum_probs=47.1

Q ss_pred             CCcEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeE--eeEecCCcceeec----cEEEEE-eCCCCEEEE--eCCCC
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTAR---GNLTVYNHMTSKR--VPVLGKHTNTIVG----QVLAIG-TARGNLTVY--NHMTS   71 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~---g~v~iwd~~~~~~--~~~~~~h~~~i~~----~~las~-s~d~~v~iw--d~~~~   71 (89)
                      ...+...+|||||+.||..+.+   ..|.+||..+++.  +..+.+|...+.-    ++|+.+ +.++.+.||  |+.++
T Consensus       203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~  282 (429)
T PRK01742        203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG  282 (429)
T ss_pred             CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCC
Confidence            4568899999999999887653   3699999988753  3444455443322    566655 568876555  66555


Q ss_pred             EEE
Q psy12376         72 KRV   74 (89)
Q Consensus        72 ~~~   74 (89)
                      ...
T Consensus       283 ~~~  285 (429)
T PRK01742        283 TPS  285 (429)
T ss_pred             CeE
Confidence            543

>KOG1064|consensus

Probab=98.06  E-value=3.2e-06  Score=66.42  Aligned_cols=73  Identities=11%  Similarity=0.137  Sum_probs=59.9

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeeccEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVGQVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      .|....+++++-|.-+.|.+|+.+|.|++||++..+..+.++.-   ..-.+|++|+..|.+.||++..-..++.+
T Consensus      2334 ~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~~---~~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2334 CHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQAL---DTREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             ecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhhh---hhhheeeccCcccceEEEEccccchhhcC
Confidence            46778999999999999999999999999999987766666541   11179999999999999999876655544

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.03  E-value=8.8e-05  Score=50.85  Aligned_cols=70  Identities=20%  Similarity=0.182  Sum_probs=50.8

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceee----c--cEEE-EEeCCCCEEEEeCCCCEEEeee
Q psy12376          8 FLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV----G--QVLA-IGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus         8 ~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~----~--~~la-s~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      ..+.|+|||+++.+.+.||.|.++|+.+++.+..+.....+..    .  ++++ +...++.+.|+|.++.+.++.+
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I  116 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTI  116 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeec
Confidence            4578999999999999999999999999998887764333221    1  5554 5568999999999988877755

...

>KOG4714|consensus

Probab=98.02  E-value=4.6e-06  Score=54.71  Aligned_cols=66  Identities=17%  Similarity=0.196  Sum_probs=52.1

Q ss_pred             CcEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEe-eEecCCcceeec--------cEEEEEeCCCCEEEEeCCC
Q psy12376          5 YYIFLLQTSQVG-QVLAIGTARGNLTVYNHMTSKRV-PVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         5 ~~i~~~~~spdg-~~la~g~~~g~v~iwd~~~~~~~-~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~   70 (89)
                      +.+++++-+|.. +.+++|+.+|.+-+||+++.... -.+..|+.+|..        ..|+++++||++.-||-.+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            348888999955 57789999999999999986432 245567776654        7899999999999999864

>KOG2055|consensus

Probab=98.00  E-value=4.5e-05  Score=53.24  Aligned_cols=76  Identities=20%  Similarity=0.117  Sum_probs=57.8

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecC---Ccceeec--------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGK---HTNTIVG--------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~---h~~~i~~--------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      ..|+++.|+|..+.|++++-||.++||.+. |+....++.   ...+|.+        ..+++++....++.||+.+++.
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvD-Gk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVD-GKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEec-CccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            469999999999999999999999999985 344333332   2345544        4899999999999999998776


Q ss_pred             Ee--eeCCCC
Q psy12376         74 VP--VLGKHT   81 (89)
Q Consensus        74 ~~--~l~~h~   81 (89)
                      .+  .+.++.
T Consensus       293 ~k~~~~~g~e  302 (514)
T KOG2055|consen  293 TKLKPPYGVE  302 (514)
T ss_pred             ccccCCCCcc
Confidence            55  344544

>KOG0650|consensus

Probab=98.00  E-value=1.4e-05  Score=57.33  Aligned_cols=63  Identities=19%  Similarity=0.336  Sum_probs=54.0

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEe
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHM-TSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYN   67 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~-~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd   67 (89)
                      .+|.+++.+|.|.-|++|+.|+.++.||.. +.+....+.-|...++.       .+||+|+.|+++.|+-
T Consensus       608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            468999999999999999999999999986 44566667778777776       8999999999999874

>KOG1188|consensus

Probab=97.99  E-value=3.3e-05  Score=52.18  Aligned_cols=75  Identities=12%  Similarity=0.111  Sum_probs=54.1

Q ss_pred             cCCcEEEEEEccC-CCEEEEEeCCCcEEEEeCCCC-eEee--EecCCcceeec--------cEEEEEeCCCCEEEEeCCC
Q psy12376          3 LRYYIFLLQTSQV-GQVLAIGTARGNLTVYNHMTS-KRVP--VLGKHTNTIVG--------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         3 ~~~~i~~~~~spd-g~~la~g~~~g~v~iwd~~~~-~~~~--~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~   70 (89)
                      |.|.|+++.|+|+ -++|++|+.||-|.+||+..- +.-.  ..-.|...|.+        +.|.+-+-..+..+|+++.
T Consensus       164 H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~  243 (376)
T KOG1188|consen  164 HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED  243 (376)
T ss_pred             ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence            6678999999995 469999999999999998642 1111  11123333433        5788889999999999988


Q ss_pred             CEEEeee
Q psy12376         71 SKRVPVL   77 (89)
Q Consensus        71 ~~~~~~l   77 (89)
                      +..+..+
T Consensus       244 ~~~~~~~  250 (376)
T KOG1188|consen  244 GSEETWL  250 (376)
T ss_pred             CChhhcc
Confidence            7654433

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.90  E-value=0.00038  Score=48.43  Aligned_cols=73  Identities=22%  Similarity=0.173  Sum_probs=47.5

Q ss_pred             CcEEEEEEccCCCEEEEEe---CCCcEEEEeCCCCeE--eeEecCCccee-ec---cEEEE-EeCCC--CEEEEeCCCCE
Q psy12376          5 YYIFLLQTSQVGQVLAIGT---ARGNLTVYNHMTSKR--VPVLGKHTNTI-VG---QVLAI-GTARG--NLTVYNHMTSK   72 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~---~~g~v~iwd~~~~~~--~~~~~~h~~~i-~~---~~las-~s~d~--~v~iwd~~~~~   72 (89)
                      ..+...+|||||+.||..+   .+..+.+|+..+|+.  +..+.++...+ .+   +.|+. .+.++  .|++||+.+++
T Consensus       199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~  278 (429)
T PRK03629        199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ  278 (429)
T ss_pred             CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            4578999999999998654   245799999988753  23334443322 22   45554 34455  58999998776


Q ss_pred             EEeee
Q psy12376         73 RVPVL   77 (89)
Q Consensus        73 ~~~~l   77 (89)
                      .....
T Consensus       279 ~~~lt  283 (429)
T PRK03629        279 IRQVT  283 (429)
T ss_pred             EEEcc
Confidence            65543

>KOG4547|consensus

Probab=97.90  E-value=7.8e-05  Score=52.99  Aligned_cols=62  Identities=21%  Similarity=0.222  Sum_probs=51.0

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------------cEEEEEeCCCCEEEEeCC
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------------~~las~s~d~~v~iwd~~   69 (89)
                      .+.++..+|||..|++++  ++|.+||+.+++.+..|++|.++|++             ..|.++..+.-+.+|-++
T Consensus       146 ~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  146 LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            478899999999999875  78999999999999999999999988             245555556667777664

>KOG1517|consensus

Probab=97.89  E-value=4.3e-05  Score=57.97  Aligned_cols=66  Identities=26%  Similarity=0.411  Sum_probs=50.5

Q ss_pred             EEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCe---EeeEecCCcce--eec--------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          7 IFLLQTSQ-VGQVLAIGTARGNLTVYNHMTSK---RVPVLGKHTNT--IVG--------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         7 i~~~~~sp-dg~~la~g~~~g~v~iwd~~~~~---~~~~~~~h~~~--i~~--------~~las~s~d~~v~iwd~~~~~   72 (89)
                      ++++.-+. .|..+|+|..||.|++||.+.-.   .+..+..|+..  |.-        ..|++|+.||.|++||++...
T Consensus      1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS 1290 (1387)
T ss_pred             ceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc
Confidence            55554443 47999999999999999987532   35566778776  543        569999999999999998743

>KOG3881|consensus

Probab=97.87  E-value=0.00011  Score=50.45  Aligned_cols=83  Identities=18%  Similarity=0.168  Sum_probs=66.6

Q ss_pred             CCcEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCe-EeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          4 RYYIFLLQTSQV--GQVLAIGTARGNLTVYNHMTSK-RVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         4 ~~~i~~~~~spd--g~~la~g~~~g~v~iwd~~~~~-~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      +=+++.+.|-+.  ...||+++.-+.+++||++.++ .+.++.-...+|.+       +++.+|..-+.+..+|++.++.
T Consensus       202 PvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl  281 (412)
T KOG3881|consen  202 PVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL  281 (412)
T ss_pred             eeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee
Confidence            335778899887  7899999999999999998764 45666555566666       8999999999999999998887


Q ss_pred             Eee-eCCCCCCCcC
Q psy12376         74 VPV-LGKHTKSKPS   86 (89)
Q Consensus        74 ~~~-l~~h~~~~~~   86 (89)
                      ... +.+.++++++
T Consensus       282 ~g~~~kg~tGsirs  295 (412)
T KOG3881|consen  282 LGCGLKGITGSIRS  295 (412)
T ss_pred             eccccCCccCCcce
Confidence            655 7777777665

>KOG1587|consensus

Probab=97.85  E-value=3.2e-05  Score=55.53  Aligned_cols=73  Identities=8%  Similarity=0.152  Sum_probs=53.5

Q ss_pred             CCcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCCC
Q psy12376          1 MNLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHM-TSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         1 ~~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~-~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~~   71 (89)
                      +.|.++++++.++|-+..+...+.|-.++||.-. ....+..+..+...+.+        ..|+++..||.+.|||+...
T Consensus       395 ~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~  474 (555)
T KOG1587|consen  395 ITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD  474 (555)
T ss_pred             cccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence            3577889999999988755555559999999876 44444444444444443        78999999999999999654


Q ss_pred             EE
Q psy12376         72 KR   73 (89)
Q Consensus        72 ~~   73 (89)
                      ..
T Consensus       475 ~~  476 (555)
T KOG1587|consen  475 DE  476 (555)
T ss_pred             cc
Confidence            33

>KOG2139|consensus

Probab=97.85  E-value=9.1e-05  Score=50.68  Aligned_cols=65  Identities=14%  Similarity=0.259  Sum_probs=50.0

Q ss_pred             CcEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeEeeEecCCccee----ec---cEEEEEeCCCCEEEEeCC
Q psy12376          5 YYIFLLQTSQVGQVLAIGTA-RGNLTVYNHMTSKRVPVLGKHTNTI----VG---QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~-~g~v~iwd~~~~~~~~~~~~h~~~i----~~---~~las~s~d~~v~iwd~~   69 (89)
                      .+|++++|.+||..+++++- |..|.|||..++..++......+.+    .+   .+|+++.-|+..++|+..
T Consensus       196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~  268 (445)
T KOG2139|consen  196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN  268 (445)
T ss_pred             ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence            46999999999999988775 6699999999987766542222222    12   788899999999999653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.81  E-value=0.00017  Score=50.06  Aligned_cols=79  Identities=9%  Similarity=0.042  Sum_probs=53.7

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCc--ceeec---cEEEEEeCCCCEEEEeC--CCCEEEeeeCCC
Q psy12376          8 FLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHT--NTIVG---QVLAIGTARGNLTVYNH--MTSKRVPVLGKH   80 (89)
Q Consensus         8 ~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~--~~i~~---~~las~s~d~~v~iwd~--~~~~~~~~l~~h   80 (89)
                      ...+|||||++|+..+.++ +.+||..+++.......+.  .+..+   ++|+.++.++...+|++  .++.....+..|
T Consensus       336 ~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~  414 (429)
T PRK01742        336 YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS  414 (429)
T ss_pred             CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC
Confidence            4578999999998887754 6669998876533222221  11122   78999999999988876  357777777777


Q ss_pred             CCCCcCC
Q psy12376         81 TKSKPST   87 (89)
Q Consensus        81 ~~~~~~~   87 (89)
                      ...+..+
T Consensus       415 ~g~~~~p  421 (429)
T PRK01742        415 DGQVKFP  421 (429)
T ss_pred             CCCCCCc
Confidence            7655543

>KOG0280|consensus

Probab=97.77  E-value=0.00022  Score=47.58  Aligned_cols=63  Identities=16%  Similarity=0.210  Sum_probs=50.7

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE--eeEecCCcceeec--------cEEEEEeCCCCEEEEeCC
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR--VPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~--~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~   69 (89)
                      ..++.|++.|..++++..+|.+.+-+......  +..+++|.-+...        +++.+||+|+.+..||++
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R  196 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR  196 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEec
Confidence            35789999999999999999999655544332  3467788776554        799999999999999998

>KOG1240|consensus

Probab=97.76  E-value=0.00019  Score=55.11  Aligned_cols=68  Identities=15%  Similarity=0.210  Sum_probs=47.7

Q ss_pred             cCCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCC--Ce--Eee---EecCCcceeec-------cEEEEEeCCCCEEEEe
Q psy12376          3 LRYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMT--SK--RVP---VLGKHTNTIVG-------QVLAIGTARGNLTVYN   67 (89)
Q Consensus         3 ~~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~--~~--~~~---~~~~h~~~i~~-------~~las~s~d~~v~iwd   67 (89)
                      |...+..++.++ ++.+|++|+.||+|++||.+.  |+  ..+   .+.....++.+       ..+|.++.||.|++.+
T Consensus      1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR 1126 (1431)
T ss_pred             ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEE
Confidence            445556666665 569999999999999999864  21  111   22212333333       7899999999999999


Q ss_pred             CCC
Q psy12376         68 HMT   70 (89)
Q Consensus        68 ~~~   70 (89)
                      ++.
T Consensus      1127 id~ 1129 (1431)
T KOG1240|consen 1127 IDH 1129 (1431)
T ss_pred             ccc
Confidence            965

>KOG2321|consensus

Probab=97.76  E-value=0.00011  Score=52.79  Aligned_cols=69  Identities=23%  Similarity=0.382  Sum_probs=53.4

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEec------CCcc-----eeec-------cEEEEEeCCCCEEEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLG------KHTN-----TIVG-------QVLAIGTARGNLTVY   66 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~------~h~~-----~i~~-------~~las~s~d~~v~iw   66 (89)
                      ..+.++..++--..||+|+.+|.|..||.++...+..+.      .|.+     .|++       -.++.|+.+|.|.||
T Consensus       176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iy  255 (703)
T KOG2321|consen  176 GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIY  255 (703)
T ss_pred             ccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEE
Confidence            468899999988899999999999999999865544432      1222     1333       479999999999999


Q ss_pred             eCCCCEE
Q psy12376         67 NHMTSKR   73 (89)
Q Consensus        67 d~~~~~~   73 (89)
                      |++..+.
T Consensus       256 DLRa~~p  262 (703)
T KOG2321|consen  256 DLRASKP  262 (703)
T ss_pred             EcccCCc
Confidence            9986543

>KOG1334|consensus

Probab=97.73  E-value=4.1e-05  Score=53.82  Aligned_cols=83  Identities=16%  Similarity=0.179  Sum_probs=61.5

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCC--C----------eEeeE-ecCCcc-----eeec-----cEEEEEeCCCC
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMT--S----------KRVPV-LGKHTN-----TIVG-----QVLAIGTARGN   62 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~--~----------~~~~~-~~~h~~-----~i~~-----~~las~s~d~~   62 (89)
                      .|++++|+.+|.-|+++-.|-.|++|...-  |          ..+.. +.+|..     .++.     .|++|||+=|.
T Consensus       338 ~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGh  417 (559)
T KOG1334|consen  338 NITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGH  417 (559)
T ss_pred             cceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccce
Confidence            399999999988888888888999996543  3          12333 677754     2222     89999999999


Q ss_pred             EEEEeCCCCEEEeeeCCCCCCCcCCC
Q psy12376         63 LTVYNHMTSKRVPVLGKHTKSKPSTE   88 (89)
Q Consensus        63 v~iwd~~~~~~~~~l~~h~~~~~~~~   88 (89)
                      |.||+-.+++.+..|.+-..-|++-|
T Consensus       418 IFiW~K~t~eii~~MegDr~VVNCLE  443 (559)
T KOG1334|consen  418 IFIWDKKTGEIIRFMEGDRHVVNCLE  443 (559)
T ss_pred             EEEEecchhHHHHHhhcccceEeccC
Confidence            99999999988887765444555543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.72  E-value=0.00043  Score=48.06  Aligned_cols=72  Identities=14%  Similarity=0.038  Sum_probs=46.9

Q ss_pred             CCcEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeEee--EecCCcce-eec---c-EEEEEeCCC--CEEEEeCCCC
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTAR---GNLTVYNHMTSKRVP--VLGKHTNT-IVG---Q-VLAIGTARG--NLTVYNHMTS   71 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~---g~v~iwd~~~~~~~~--~~~~h~~~-i~~---~-~las~s~d~--~v~iwd~~~~   71 (89)
                      ...+.+.+|+|||+.|+..+..   ..|.+||..+++...  .+.++... ...   + ++++.+.++  .|++||+.++
T Consensus       203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g  282 (433)
T PRK04922        203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR  282 (433)
T ss_pred             CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC
Confidence            3457889999999999987643   469999998876432  22222221 111   4 444556655  5999999877


Q ss_pred             EEEe
Q psy12376         72 KRVP   75 (89)
Q Consensus        72 ~~~~   75 (89)
                      +...
T Consensus       283 ~~~~  286 (433)
T PRK04922        283 QLTR  286 (433)
T ss_pred             CeEE
Confidence            6544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.71  E-value=0.00055  Score=47.52  Aligned_cols=65  Identities=20%  Similarity=0.104  Sum_probs=42.5

Q ss_pred             CCcEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeEeeE--ecCCcc-eeec---cEE-EEEeCCCCEEEEeC
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTAR---GNLTVYNHMTSKRVPV--LGKHTN-TIVG---QVL-AIGTARGNLTVYNH   68 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~---g~v~iwd~~~~~~~~~--~~~h~~-~i~~---~~l-as~s~d~~v~iwd~   68 (89)
                      ...+.+.+|||||+.||..+..   ..|.+||..+++....  +.++.. +..+   +.| ++.+.++...||.+
T Consensus       195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            4567889999999999877643   3599999988865332  222222 2222   444 46678887666654

>KOG4227|consensus

Probab=97.70  E-value=0.00039  Score=48.30  Aligned_cols=70  Identities=16%  Similarity=0.163  Sum_probs=56.1

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCC--cceeec-------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKH--TNTIVG-------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h--~~~i~~-------~~las~s~d~~v~iwd~~~~~   72 (89)
                      |+..|.|++|.....++.+|..+++|.+.|+.+.+.+..+...  .+.|..       +.|++.+.++-|.+||.+..+
T Consensus       104 H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  104 HRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             cccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence            4567999999999999999999999999999988766554311  123332       899999999999999997544

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.58  E-value=0.0015  Score=44.57  Aligned_cols=70  Identities=19%  Similarity=0.059  Sum_probs=45.1

Q ss_pred             CcEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeEeeEecCCcceee----c---cEE-EEEeCCC--CEEEEeCCCC
Q psy12376          5 YYIFLLQTSQVGQVLAIGTAR---GNLTVYNHMTSKRVPVLGKHTNTIV----G---QVL-AIGTARG--NLTVYNHMTS   71 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~---g~v~iwd~~~~~~~~~~~~h~~~i~----~---~~l-as~s~d~--~v~iwd~~~~   71 (89)
                      ..+...+|||||++||.....   ..|++||+.+++.... ..+.....    .   +.| ++.+.++  .|++||+.++
T Consensus       190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~  268 (417)
T TIGR02800       190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK  268 (417)
T ss_pred             CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC
Confidence            347788999999999887654   4799999988754322 22222111    1   444 4555444  5999999876


Q ss_pred             EEEe
Q psy12376         72 KRVP   75 (89)
Q Consensus        72 ~~~~   75 (89)
                      ....
T Consensus       269 ~~~~  272 (417)
T TIGR02800       269 QLTR  272 (417)
T ss_pred             CEEE
Confidence            5543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.57  E-value=0.0016  Score=45.02  Aligned_cols=72  Identities=18%  Similarity=0.099  Sum_probs=46.1

Q ss_pred             CCcEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeEee--EecCCcc-eeec---cEEE-EEeCCC--CEEEEeCCCC
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTAR---GNLTVYNHMTSKRVP--VLGKHTN-TIVG---QVLA-IGTARG--NLTVYNHMTS   71 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~---g~v~iwd~~~~~~~~--~~~~h~~-~i~~---~~la-s~s~d~--~v~iwd~~~~   71 (89)
                      ...+...+|||||+.||..+.+   ..|.+||..+++...  ...++.. +..+   ++|+ +.+.++  .|++||+.++
T Consensus       198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~  277 (430)
T PRK00178        198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR  277 (430)
T ss_pred             CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence            3457889999999999876543   369999998875432  2222222 2222   4444 555555  5888899877


Q ss_pred             EEEe
Q psy12376         72 KRVP   75 (89)
Q Consensus        72 ~~~~   75 (89)
                      +...
T Consensus       278 ~~~~  281 (430)
T PRK00178        278 QLSR  281 (430)
T ss_pred             CeEE
Confidence            6543

>KOG2695|consensus

Probab=97.53  E-value=0.0001  Score=50.23  Aligned_cols=77  Identities=19%  Similarity=0.264  Sum_probs=58.0

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCe-----EeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSK-----RVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~-----~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~~~   72 (89)
                      .|.+++|.-.++.+..|+.+|.|..+|.+.+.     +...+ -|.+.|++        .+|.+.+.+|.|.+||++--+
T Consensus       254 DVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K  332 (425)
T KOG2695|consen  254 DVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK  332 (425)
T ss_pred             hHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhh
Confidence            36677888888999999999999999998641     12222 36777776        677778999999999998544


Q ss_pred             E---EeeeCCCCCC
Q psy12376         73 R---VPVLGKHTKS   83 (89)
Q Consensus        73 ~---~~~l~~h~~~   83 (89)
                      +   +....+|.+.
T Consensus       333 ~~~~V~qYeGHvN~  346 (425)
T KOG2695|consen  333 CKKSVMQYEGHVNL  346 (425)
T ss_pred             cccceeeeeccccc
Confidence            4   6666777653

>KOG1963|consensus

Probab=97.53  E-value=0.00057  Score=50.61  Aligned_cols=65  Identities=17%  Similarity=0.174  Sum_probs=48.8

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeC
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~   68 (89)
                      |.++|.+++||+||.+|.+|+..|.+.+|...+++ ...+..-.++|..       .+.+..-.|+.|.+-..
T Consensus       250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA  321 (792)
T ss_pred             cccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence            45689999999999999999999999999999877 2333333455543       55555566777777655

>KOG2111|consensus

Probab=97.52  E-value=0.00092  Score=45.02  Aligned_cols=75  Identities=15%  Similarity=0.328  Sum_probs=54.1

Q ss_pred             EEEEEEccCCCEEEE-EeCCCcEEEEeCCCCeE--eeEecCCcceeec-------cEEEEEeCCCC-EEEEeCCCCEEEe
Q psy12376          7 IFLLQTSQVGQVLAI-GTARGNLTVYNHMTSKR--VPVLGKHTNTIVG-------QVLAIGTARGN-LTVYNHMTSKRVP   75 (89)
Q Consensus         7 i~~~~~spdg~~la~-g~~~g~v~iwd~~~~~~--~~~~~~h~~~i~~-------~~las~s~d~~-v~iwd~~~~~~~~   75 (89)
                      +.++.-+-+-..||. |-..|.|+|-|....+.  -..+.+|...|.|       .++||+|..|+ |+|||.++|..+.
T Consensus       139 lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~  218 (346)
T KOG2111|consen  139 LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQ  218 (346)
T ss_pred             eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEee
Confidence            333333333345554 34578999999876554  2456789999988       79999999997 6899999999988


Q ss_pred             eeCCCC
Q psy12376         76 VLGKHT   81 (89)
Q Consensus        76 ~l~~h~   81 (89)
                      .+.+-.
T Consensus       219 E~RRG~  224 (346)
T KOG2111|consen  219 ELRRGV  224 (346)
T ss_pred             eeecCC
Confidence            875433

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.51  E-value=0.0016  Score=43.43  Aligned_cols=65  Identities=9%  Similarity=0.083  Sum_probs=43.5

Q ss_pred             cEEEEEEccCCCEEEEEeC-CCcEEEEeCCC-Ce---EeeEecC----Ccceeec--cE-EEEEeCCCCEEEEeCCC
Q psy12376          6 YIFLLQTSQVGQVLAIGTA-RGNLTVYNHMT-SK---RVPVLGK----HTNTIVG--QV-LAIGTARGNLTVYNHMT   70 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~-~g~v~iwd~~~-~~---~~~~~~~----h~~~i~~--~~-las~s~d~~v~iwd~~~   70 (89)
                      ....++|+|+|++|+++.. ++.|.+|+..+ +.   .+..+.+    |.-.+..  ++ +++...++.|.+||+.+
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~  157 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD  157 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence            4578999999998877664 88999999863 32   2222222    2212221  44 46677789999999975

>KOG1354|consensus

Probab=97.48  E-value=0.00083  Score=45.91  Aligned_cols=66  Identities=14%  Similarity=0.175  Sum_probs=48.9

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCC-Ce----EeeEecCCcceee----------------c-----cEEEEEe
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMT-SK----RVPVLGKHTNTIV----------------G-----QVLAIGT   58 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~-~~----~~~~~~~h~~~i~----------------~-----~~las~s   58 (89)
                      +-|+++.|..+|++||+|..+|.|.+|.... .+    ....++.|....-                +     ..+...+
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            5589999999999999999999999998643 22    3445666643111                1     4555667


Q ss_pred             CCCCEEEEeCCC
Q psy12376         59 ARGNLTVYNHMT   70 (89)
Q Consensus        59 ~d~~v~iwd~~~   70 (89)
                      .|.++.+|-+..
T Consensus       106 NdktiKlWKi~e  117 (433)
T KOG1354|consen  106 NDKTIKLWKIRE  117 (433)
T ss_pred             CCcceeeeeeec
Confidence            999999999964

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.47  E-value=0.003  Score=44.02  Aligned_cols=79  Identities=10%  Similarity=0.070  Sum_probs=50.0

Q ss_pred             EEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeEeeEecC-Cc--ceeec---cEEEEEeCCCC---EEEEeCCCCEEE
Q psy12376          7 IFLLQTSQVGQVLAIGTAR---GNLTVYNHMTSKRVPVLGK-HT--NTIVG---QVLAIGTARGN---LTVYNHMTSKRV   74 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~---g~v~iwd~~~~~~~~~~~~-h~--~~i~~---~~las~s~d~~---v~iwd~~~~~~~   74 (89)
                      .....|||||++|+..+.+   ..|.+||..+++. ..+.. +.  .+-.+   ++|+.++.++.   ++++++. +...
T Consensus       333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~  410 (429)
T PRK03629        333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFK  410 (429)
T ss_pred             ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCe
Confidence            4568999999998876543   3588899988764 33332 11  12222   67777777765   6777874 5545


Q ss_pred             eeeCCCCCCCcCC
Q psy12376         75 PVLGKHTKSKPST   87 (89)
Q Consensus        75 ~~l~~h~~~~~~~   87 (89)
                      ..+..|...+..|
T Consensus       411 ~~l~~~~~~~~~p  423 (429)
T PRK03629        411 ARLPATDGQVKFP  423 (429)
T ss_pred             EECccCCCCcCCc
Confidence            5566676655443

>KOG2079|consensus

Probab=97.47  E-value=0.00045  Score=52.58  Aligned_cols=63  Identities=21%  Similarity=0.337  Sum_probs=47.8

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec----------cEEEEEeCCCCEEEEeC
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG----------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~----------~~las~s~d~~v~iwd~   68 (89)
                      ..++++++|+.||..++.|-.+|.|.+||+..++.++.+..|..+...          ..+.++..-|.  +|++
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            457999999999999999999999999999998888877655444333          34555555554  5554

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.46  E-value=0.0018  Score=45.42  Aligned_cols=71  Identities=15%  Similarity=0.049  Sum_probs=44.8

Q ss_pred             CcEEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCeEe--eEecCCcc-eeec---cEE-EEEeCCCC--EEEEeCCCCE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTA-RG--NLTVYNHMTSKRV--PVLGKHTN-TIVG---QVL-AIGTARGN--LTVYNHMTSK   72 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~-~g--~v~iwd~~~~~~~--~~~~~h~~-~i~~---~~l-as~s~d~~--v~iwd~~~~~   72 (89)
                      ..+....|||||+.|+..+. ++  .|.+||..+++..  ..+.++.. +..+   +.| ++.+.++.  |+++|+.+++
T Consensus       218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~  297 (448)
T PRK04792        218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA  297 (448)
T ss_pred             CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence            34678899999999887654 33  6889998877642  22333322 2222   444 45566665  7888888776


Q ss_pred             EEe
Q psy12376         73 RVP   75 (89)
Q Consensus        73 ~~~   75 (89)
                      ...
T Consensus       298 ~~~  300 (448)
T PRK04792        298 LTR  300 (448)
T ss_pred             eEE
Confidence            544

>KOG2321|consensus

Probab=97.45  E-value=0.00042  Score=49.86  Aligned_cols=72  Identities=14%  Similarity=0.094  Sum_probs=55.1

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      ...+.++.-..-|.+++....|+-++...|+.+..+....+.+++       .+||+|+.||.|.+||.++..+...+.
T Consensus       136 GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~  214 (703)
T KOG2321|consen  136 GRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLD  214 (703)
T ss_pred             CccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeee
Confidence            445666654444555555668999999999998888766666665       799999999999999999887776653

>smart00320 WD40 WD40 repeats

Probab=97.44  E-value=0.00042  Score=30.09  Aligned_cols=29  Identities=21%  Similarity=0.461  Sum_probs=20.9

Q ss_pred             eeEecCCcceeec-------cEEEEEeCCCCEEEEe
Q psy12376         39 VPVLGKHTNTIVG-------QVLAIGTARGNLTVYN   67 (89)
Q Consensus        39 ~~~~~~h~~~i~~-------~~las~s~d~~v~iwd   67 (89)
                      ...+..|...|.+       .++++++.|+.+++||
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3344445555544       6899999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.43  E-value=0.0021  Score=43.60  Aligned_cols=67  Identities=16%  Similarity=0.110  Sum_probs=45.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEeeEecCC-----cceeec-cEEEEEeCCCCEEEEeCCCCEEEeeeCCCC
Q psy12376         15 VGQVLAIGTARGNLTVYNHMTSKRVPVLGKH-----TNTIVG-QVLAIGTARGNLTVYNHMTSKRVPVLGKHT   81 (89)
Q Consensus        15 dg~~la~g~~~g~v~iwd~~~~~~~~~~~~h-----~~~i~~-~~las~s~d~~v~iwd~~~~~~~~~l~~h~   81 (89)
                      ++..+..++.+|.+..+|..+|+.+......     ..++.. .++..++.||.|+++|..+++.+..+.-+.
T Consensus       278 ~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~  350 (377)
T TIGR03300       278 DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDG  350 (377)
T ss_pred             eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence            4566777778888888888888766544211     122222 677888888889999888888776654333

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1354|consensus

Probab=97.41  E-value=0.00059  Score=46.59  Aligned_cols=69  Identities=16%  Similarity=0.165  Sum_probs=52.4

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeEeeEecCCcc------------ee----ec------cEEEEEeCCC
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNH-MTSKRVPVLGKHTN------------TI----VG------QVLAIGTARG   61 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~-~~~~~~~~~~~h~~------------~i----~~------~~las~s~d~   61 (89)
                      ..|+.+.||++|+++++-+. -+|.+||. ...+.+..++-|..            .|    .|      .++.+||..+
T Consensus       273 sSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n  351 (433)
T KOG1354|consen  273 SSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNN  351 (433)
T ss_pred             hhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccc
Confidence            35889999999999998653 49999998 56677777666632            11    11      5999999999


Q ss_pred             CEEEEeCCCCEEE
Q psy12376         62 NLTVYNHMTSKRV   74 (89)
Q Consensus        62 ~v~iwd~~~~~~~   74 (89)
                      .++++++..|...
T Consensus       352 ~frvf~~~~gsk~  364 (433)
T KOG1354|consen  352 VFRVFNLARGSKE  364 (433)
T ss_pred             eEEEecCCCCcce
Confidence            9999998655443

>KOG4532|consensus

Probab=97.40  E-value=0.0033  Score=41.87  Aligned_cols=75  Identities=13%  Similarity=0.083  Sum_probs=56.1

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCe-EeeEe----cCCcceeec---------cEEEEEeCCCCEEEEeCC
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSK-RVPVL----GKHTNTIVG---------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~-~~~~~----~~h~~~i~~---------~~las~s~d~~v~iwd~~   69 (89)
                      .|.-.+..||.....+|+++.||.+.|||++.-. .+...    ..|++.++.         .+|....-=+.+.+-|++
T Consensus       203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R  282 (344)
T KOG4532|consen  203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR  282 (344)
T ss_pred             CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence            3445688999999999999999999999998743 33322    237777664         577777777889999999


Q ss_pred             CCEEEeeeC
Q psy12376         70 TSKRVPVLG   78 (89)
Q Consensus        70 ~~~~~~~l~   78 (89)
                      +....+.+.
T Consensus       283 ~~~~~q~I~  291 (344)
T KOG4532|consen  283 NYVNHQVIV  291 (344)
T ss_pred             cCceeeEEe
Confidence            877655543

>KOG1517|consensus

Probab=97.39  E-value=0.00065  Score=51.90  Aligned_cols=71  Identities=17%  Similarity=0.304  Sum_probs=49.9

Q ss_pred             cCCc--EEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEee--EecCC---cceeec-------cEEEEEeCCCCEEEEe
Q psy12376          3 LRYY--IFLLQTSQVGQ-VLAIGTARGNLTVYNHMTSKRVP--VLGKH---TNTIVG-------QVLAIGTARGNLTVYN   67 (89)
Q Consensus         3 ~~~~--i~~~~~spdg~-~la~g~~~g~v~iwd~~~~~~~~--~~~~h---~~~i~~-------~~las~s~d~~v~iwd   67 (89)
                      |.++  |..+.+-+.|- .|++|+.+|.|.+||++......  ....|   .+.+++       ..+|+|+. +.+.||+
T Consensus      1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred             cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence            4444  88999998776 59999999999999998732211  11111   222444       78999988 9999999


Q ss_pred             CCCCEEEe
Q psy12376         68 HMTSKRVP   75 (89)
Q Consensus        68 ~~~~~~~~   75 (89)
                      +. |+.+.
T Consensus      1332 ~~-G~~l~ 1338 (1387)
T KOG1517|consen 1332 LS-GEQLN 1338 (1387)
T ss_pred             cC-hhhhc
Confidence            96 34333

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.36  E-value=0.0034  Score=41.79  Aligned_cols=63  Identities=6%  Similarity=-0.020  Sum_probs=40.4

Q ss_pred             EEEEEEccCCCEEE-EEeCCCcEEEEeCCCCeEee-------EecCCcc--eeec----cEEEEEeC-CCCEEEEeCC
Q psy12376          7 IFLLQTSQVGQVLA-IGTARGNLTVYNHMTSKRVP-------VLGKHTN--TIVG----QVLAIGTA-RGNLTVYNHM   69 (89)
Q Consensus         7 i~~~~~spdg~~la-~g~~~g~v~iwd~~~~~~~~-------~~~~h~~--~i~~----~~las~s~-d~~v~iwd~~   69 (89)
                      ..+++++|+|++++ +...++.|.+||+.+...+.       .......  .+..    ++++++.. +++|.+|++.
T Consensus       128 ~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        128 CHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             ccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            46788999999885 55567899999997632221       1111111  1211    56655544 9999999996

>KOG1240|consensus

Probab=97.36  E-value=0.0015  Score=50.45  Aligned_cols=75  Identities=19%  Similarity=0.199  Sum_probs=55.6

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEec-CCcceee---c-------c-EEEEEe-CCCCEEEEeCCCC
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLG-KHTNTIV---G-------Q-VLAIGT-ARGNLTVYNHMTS   71 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~-~h~~~i~---~-------~-~las~s-~d~~v~iwd~~~~   71 (89)
                      +.|++++.+|-++++++|+..|.+.+||+|=+..+..+. ++..+|+   +       . .+++++ ..+.|.+||..+|
T Consensus      1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence            359999999999999999999999999998766665543 2223332   1       2 344444 6889999999988


Q ss_pred             EEEeeeCC
Q psy12376         72 KRVPVLGK   79 (89)
Q Consensus        72 ~~~~~l~~   79 (89)
                      .+...+-.
T Consensus      1276 ~~~~vl~~ 1283 (1431)
T KOG1240|consen 1276 LRQTVLWA 1283 (1431)
T ss_pred             cceEEEEc
Confidence            87776643

>KOG1645|consensus

Probab=97.34  E-value=0.00074  Score=46.81  Aligned_cols=66  Identities=18%  Similarity=0.198  Sum_probs=53.9

Q ss_pred             cEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCC
Q psy12376          6 YIFLLQTSQVGQ-VLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         6 ~i~~~~~spdg~-~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~   71 (89)
                      -|..++|||..+ .+..++-+.+|.|.|+++.-.+..+..|...-.|       .+|-.|-.+|.|.|||++..
T Consensus       195 ~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  195 FIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             hhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence            478899999988 6788888999999999998777777666433333       78999999999999999753

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.23  E-value=0.005  Score=42.82  Aligned_cols=70  Identities=14%  Similarity=0.118  Sum_probs=43.4

Q ss_pred             CcEEEEEEccCCCEEEE-EeCCC--cEEEEeCCCCeEeeEecCCcceee----c---cEEEEEeC-CC--CEEEEeCCCC
Q psy12376          5 YYIFLLQTSQVGQVLAI-GTARG--NLTVYNHMTSKRVPVLGKHTNTIV----G---QVLAIGTA-RG--NLTVYNHMTS   71 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~-g~~~g--~v~iwd~~~~~~~~~~~~h~~~i~----~---~~las~s~-d~--~v~iwd~~~~   71 (89)
                      ..+...+|||||+.|+. .+.+|  .|.+||..+++. ..+..+.....    .   +.|+..+. ++  .|++||+.++
T Consensus       246 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~  324 (435)
T PRK05137        246 GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS  324 (435)
T ss_pred             CcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence            34667899999998764 44455  477889887754 44544433221    1   55665553 33  6888888765


Q ss_pred             EEEe
Q psy12376         72 KRVP   75 (89)
Q Consensus        72 ~~~~   75 (89)
                      ....
T Consensus       325 ~~~~  328 (435)
T PRK05137        325 NPRR  328 (435)
T ss_pred             CeEE
Confidence            5433

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.22  E-value=0.0089  Score=34.63  Aligned_cols=57  Identities=18%  Similarity=0.293  Sum_probs=40.8

Q ss_pred             EEEccCC-CEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec------cEEEEEeCCCCEEEEeCC
Q psy12376         10 LQTSQVG-QVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus        10 ~~~spdg-~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~------~~las~s~d~~v~iwd~~   69 (89)
                      +.|.-|| +.|++|+.|..|++|+-.  +.+..+..... +.+      ..|+.+-.+|+|-+|+-.
T Consensus         8 ~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~-v~~L~~~~~~~F~Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen    8 FDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDK-VTSLCSLGGGRFAYALANGTVGVYDRS   71 (111)
T ss_pred             EecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccc-eEEEEEcCCCEEEEEecCCEEEEEeCc
Confidence            3444455 499999999999999754  45566654332 222      789999999999888753

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.19  E-value=0.007  Score=42.38  Aligned_cols=72  Identities=17%  Similarity=0.127  Sum_probs=56.8

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcc----eeec----------------------cEEEEEeC
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTN----TIVG----------------------QVLAIGTA   59 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~----~i~~----------------------~~las~s~   59 (89)
                      .+.++..+|++.+.|+...=|-|.++|..++..++-++|..+    .+..                      -+++-+-.
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            488999999999999988889999999999877666555432    1111                      35677788


Q ss_pred             CCCEEEEeCCCCEEEeee
Q psy12376         60 RGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        60 d~~v~iwd~~~~~~~~~l   77 (89)
                      -|-|.||+++.|.++..+
T Consensus       389 Rg~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  389 RGILEVWSMRQGPRVAAF  406 (415)
T ss_pred             CCeEEEEecCCCCEEEEE
Confidence            999999999999888765

>KOG4640|consensus

Probab=97.17  E-value=0.0035  Score=45.56  Aligned_cols=72  Identities=15%  Similarity=0.184  Sum_probs=59.5

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceee-c-------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV-G-------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~-~-------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      +-.+.-+.|+|.-..+|.++.+|++.+.... .+.+..+.-|+..+. +       ++||.|=.||+|++-|++.+..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            4457889999999999999999999998776 566777765666655 3       899999999999999998876655


Q ss_pred             e
Q psy12376         76 V   76 (89)
Q Consensus        76 ~   76 (89)
                      -
T Consensus        99 ~   99 (665)
T KOG4640|consen   99 S   99 (665)
T ss_pred             c
Confidence            3

>KOG4640|consensus

Probab=97.11  E-value=0.0013  Score=47.63  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=30.9

Q ss_pred             cEE-EEEEccCCCEEEEEeCCCcEEEEeCCCCeEee
Q psy12376          6 YIF-LLQTSQVGQVLAIGTARGNLTVYNHMTSKRVP   40 (89)
Q Consensus         6 ~i~-~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~   40 (89)
                      .++ +++|.|||+.||.|-.||+|.+-|+..+..+.
T Consensus        63 ~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   63 NVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            355 99999999999999999999999998876544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.10  E-value=0.0067  Score=38.18  Aligned_cols=63  Identities=21%  Similarity=0.215  Sum_probs=47.9

Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCeEeeEecCC----cceeec-cEEEEEeCCCCEEEEeCCCCEEEee
Q psy12376         14 QVGQVLAIGTARGNLTVYNHMTSKRVPVLGKH----TNTIVG-QVLAIGTARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus        14 pdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h----~~~i~~-~~las~s~d~~v~iwd~~~~~~~~~   76 (89)
                      +++..+.+++.++.+..||+.+|+.+......    ..++.. ..++.++.|+.++.+|..+|+....
T Consensus        34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~  101 (238)
T PF13360_consen   34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWS  101 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEE
T ss_pred             EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeee
Confidence            35667777789999999999999987766531    112222 6777777888999999999988776

...

>KOG4190|consensus

Probab=97.08  E-value=0.00034  Score=50.54  Aligned_cols=74  Identities=7%  Similarity=0.130  Sum_probs=50.3

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCC-Ce------EeeEecCCcceeec-----cEEEEEeCCCCEEEEeCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMT-SK------RVPVLGKHTNTIVG-----QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~-~~------~~~~~~~h~~~i~~-----~~las~s~d~~v~iwd~~   69 (89)
                      +|+..|..++--.+.+-+++++.|.+|++|.++. |.      +...++.|+.+|.+     ..-..++.|+.+.+||.-
T Consensus       733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPF  812 (1034)
T KOG4190|consen  733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPF  812 (1034)
T ss_pred             CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeeccc
Confidence            3444455444334456788999999999999864 22      34567889999887     222344678999999986


Q ss_pred             CCEEEe
Q psy12376         70 TSKRVP   75 (89)
Q Consensus        70 ~~~~~~   75 (89)
                      -+....
T Consensus       813 igr~La  818 (1034)
T KOG4190|consen  813 IGRLLA  818 (1034)
T ss_pred             ccchhH
Confidence            555443

>KOG4532|consensus

Probab=97.08  E-value=0.0079  Score=40.12  Aligned_cols=64  Identities=11%  Similarity=-0.036  Sum_probs=48.0

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeEeeE-ecC---Ccceeec-----cEEEEEeCCCCEEEEeCCC
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMT-SKRVPV-LGK---HTNTIVG-----QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~-~~~~~~-~~~---h~~~i~~-----~~las~s~d~~v~iwd~~~   70 (89)
                      ..++++|+|++++++-++...|..|.+.. ++.+.. ...   -.+.-.+     ..+|.+..||++.|||++.
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~  234 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRN  234 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecc
Confidence            56899999999999999999999999864 444322 211   1122222     7899999999999999974

>KOG1912|consensus

Probab=97.01  E-value=0.0016  Score=48.56  Aligned_cols=77  Identities=13%  Similarity=0.192  Sum_probs=60.6

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------------------cEEEEEeCCCCEEEE
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------------------QVLAIGTARGNLTVY   66 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------------------~~las~s~d~~v~iw   66 (89)
                      ...++.|+|.| .||.|+.+ .|.+-|.++.+.+..+.-|+..|..                   -+||++...|.|.+|
T Consensus        17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~   94 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV   94 (1062)
T ss_pred             cccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence            35678999998 67777654 6777899988888877777765543                   479999999999999


Q ss_pred             eCCCCEEEeeeCCCCCCC
Q psy12376         67 NHMTSKRVPVLGKHTKSK   84 (89)
Q Consensus        67 d~~~~~~~~~l~~h~~~~   84 (89)
                      |...+..+..+..|.+++
T Consensus        95 d~~~~s~~~~l~~~~~~~  112 (1062)
T KOG1912|consen   95 DFVLASVINWLSHSNDSV  112 (1062)
T ss_pred             EehhhhhhhhhcCCCcch
Confidence            999888877777666553

>PRK02889 tolB translocation protein TolB; Provisional

Probab=96.99  E-value=0.015  Score=40.47  Aligned_cols=78  Identities=15%  Similarity=0.132  Sum_probs=44.4

Q ss_pred             EEEEEccCCCEEEEEeCCC---cEEEEeCCCCeEeeEecCCc--ceeec---cEEEEEeCCC-C--EEEEeCCCCEEEee
Q psy12376          8 FLLQTSQVGQVLAIGTARG---NLTVYNHMTSKRVPVLGKHT--NTIVG---QVLAIGTARG-N--LTVYNHMTSKRVPV   76 (89)
Q Consensus         8 ~~~~~spdg~~la~g~~~g---~v~iwd~~~~~~~~~~~~h~--~~i~~---~~las~s~d~-~--v~iwd~~~~~~~~~   76 (89)
                      ...+|||||++|+..+.++   .|.+||..+++......+..  .+-.+   ++|+.++.++ .  +++-++ ++.....
T Consensus       331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~  409 (427)
T PRK02889        331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQR  409 (427)
T ss_pred             CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEE
Confidence            3578999999998877655   69999998876433222211  11112   5555554433 3  555555 4555555


Q ss_pred             eCCCCCCCcC
Q psy12376         77 LGKHTKSKPS   86 (89)
Q Consensus        77 l~~h~~~~~~   86 (89)
                      +..+...+..
T Consensus       410 l~~~~g~~~~  419 (427)
T PRK02889        410 LSVQGGDVRE  419 (427)
T ss_pred             eecCCCCCCC
Confidence            5444444433

>KOG1064|consensus

Probab=96.95  E-value=0.00046  Score=55.07  Aligned_cols=74  Identities=14%  Similarity=0.190  Sum_probs=53.2

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEec-----------------------------------------
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLG-----------------------------------------   43 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~-----------------------------------------   43 (89)
                      ..++.+.|+.+|..+.++..||.+.+|.+.. +.....+                                         
T Consensus      2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-k~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-KPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred             chhhhhhhcccCCceeeeccCCceeecccCC-cceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccce
Confidence            4577889999999999999999999998753 1111111                                         


Q ss_pred             ---CCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEeeeCC
Q psy12376         44 ---KHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPVLGK   79 (89)
Q Consensus        44 ---~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~l~~   79 (89)
                         .|.+..++       .+|++||.+|.|.+||++..+..+..++
T Consensus      2331 v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2331 VHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred             eeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh
Confidence               12222222       7899999999999999988777665543

>KOG1523|consensus

Probab=96.95  E-value=0.0039  Score=42.18  Aligned_cols=67  Identities=12%  Similarity=0.078  Sum_probs=53.7

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeEee--EecCCcceeec-------cEEEEEeCCCCEEEEeCC
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNH-MTSKRVP--VLGKHTNTIVG-------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~-~~~~~~~--~~~~h~~~i~~-------~~las~s~d~~v~iwd~~   69 (89)
                      |...++++.|+|..+.|++++.|..-++|.. ..++-..  .+-.++....|       +.||.||.-..|.||-.+
T Consensus        54 Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E  130 (361)
T KOG1523|consen   54 HDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYE  130 (361)
T ss_pred             hCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEe
Confidence            4557999999999999999999999999998 4444322  33346666666       899999999999999885

>KOG1275|consensus

Probab=96.93  E-value=0.0018  Score=48.90  Aligned_cols=63  Identities=14%  Similarity=0.220  Sum_probs=52.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----cEEEEEeC---------CCCEEEEeCCCCEEEeee
Q psy12376         15 VGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----QVLAIGTA---------RGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        15 dg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----~~las~s~---------d~~v~iwd~~~~~~~~~l   77 (89)
                      +++++.+|...|+|.+.|.++.+.++.+..|++.|.+     ++|++||.         |..|.|||++.=..+..+
T Consensus       186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI  262 (1118)
T KOG1275|consen  186 NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI  262 (1118)
T ss_pred             cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence            6689999999999999999999999999999999887     78888874         557889999865544443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=96.88  E-value=0.019  Score=40.00  Aligned_cols=73  Identities=16%  Similarity=0.098  Sum_probs=43.1

Q ss_pred             EEEEEccCCCEEEEEeCCC---cEEEEeCCCCeEeeEecCC-c--ceeec---cEEEEEeC---CCCEEEEeCCCCEEEe
Q psy12376          8 FLLQTSQVGQVLAIGTARG---NLTVYNHMTSKRVPVLGKH-T--NTIVG---QVLAIGTA---RGNLTVYNHMTSKRVP   75 (89)
Q Consensus         8 ~~~~~spdg~~la~g~~~g---~v~iwd~~~~~~~~~~~~h-~--~~i~~---~~las~s~---d~~v~iwd~~~~~~~~   75 (89)
                      ...+|||||++|+..+.++   .|.+||..+++.. .+... .  .+..+   ++++..+.   .+.|+++++..+ ...
T Consensus       339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~  416 (433)
T PRK04922        339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQ  416 (433)
T ss_pred             cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceE
Confidence            4679999999998766543   6999999877643 33321 1  11112   55555444   345888888543 344


Q ss_pred             eeCCCCC
Q psy12376         76 VLGKHTK   82 (89)
Q Consensus        76 ~l~~h~~   82 (89)
                      .+..+..
T Consensus       417 ~l~~~~g  423 (433)
T PRK04922        417 RLVSADG  423 (433)
T ss_pred             EcccCCC
Confidence            4443333

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.85  E-value=0.017  Score=39.17  Aligned_cols=63  Identities=19%  Similarity=0.303  Sum_probs=40.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcc----eeec-cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         15 VGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTN----TIVG-QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        15 dg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~----~i~~-~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      ++..++.++.+|.+..+|..+|+.+........    ++.. ..+..++.|+.|+.||.++|+.+...
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~  171 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTY  171 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEE
Confidence            455667777788888888877776655432111    1111 55666677888888888877765543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=96.84  E-value=0.024  Score=39.62  Aligned_cols=71  Identities=15%  Similarity=0.110  Sum_probs=44.7

Q ss_pred             cEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeEeeEecCCc----ceeec---cEEE-EEeC--CCCEEEEeCCCCE
Q psy12376          6 YIFLLQTSQVGQVLAIGTAR---GNLTVYNHMTSKRVPVLGKHT----NTIVG---QVLA-IGTA--RGNLTVYNHMTSK   72 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~---g~v~iwd~~~~~~~~~~~~h~----~~i~~---~~la-s~s~--d~~v~iwd~~~~~   72 (89)
                      .+....|||||+.|+....+   ..|.+||..+++.. .+....    .+..+   ++|+ ++..  +..|++||+.+++
T Consensus       328 ~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~  406 (428)
T PRK01029        328 NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK  406 (428)
T ss_pred             CccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            45678999999998876543   36999999887653 333211    12222   4444 4333  3578899998776


Q ss_pred             EEeee
Q psy12376         73 RVPVL   77 (89)
Q Consensus        73 ~~~~l   77 (89)
                      .....
T Consensus       407 ~~~Lt  411 (428)
T PRK01029        407 TRKIV  411 (428)
T ss_pred             EEEee
Confidence            65443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.79  E-value=0.0071  Score=41.20  Aligned_cols=68  Identities=13%  Similarity=0.190  Sum_probs=50.8

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCe-----EeeEecCCccee------------ec---------cEEEEE
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSK-----RVPVLGKHTNTI------------VG---------QVLAIG   57 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~-----~~~~~~~h~~~i------------~~---------~~las~   57 (89)
                      .+.|+++.|...|.+||+|...|.|.+|.....+     ....+++|.-..            ..         ..+.-.
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4569999999999999999999999999865432     345577775321            11         455555


Q ss_pred             eCCCCEEEEeCCCC
Q psy12376         58 TARGNLTVYNHMTS   71 (89)
Q Consensus        58 s~d~~v~iwd~~~~   71 (89)
                      +.|.+|.+|.+...
T Consensus       106 tNdktiKlWKiyek  119 (460)
T COG5170         106 TNDKTIKLWKIYEK  119 (460)
T ss_pred             cCCceeeeeeeecc
Confidence            79999999999643

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=96.77  E-value=0.028  Score=38.42  Aligned_cols=67  Identities=15%  Similarity=0.092  Sum_probs=43.3

Q ss_pred             EEEEEEccCCCEEEEEeCC-C--cEEEEeCCCCeEeeEecCCcc----eeec---cEEEEEeCCC---CEEEEeCCCCEE
Q psy12376          7 IFLLQTSQVGQVLAIGTAR-G--NLTVYNHMTSKRVPVLGKHTN----TIVG---QVLAIGTARG---NLTVYNHMTSKR   73 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~-g--~v~iwd~~~~~~~~~~~~h~~----~i~~---~~las~s~d~---~v~iwd~~~~~~   73 (89)
                      ....+|+|||+.|+..+.. |  .|.++|..+++..+ +..+..    +..+   ++++.++.++   .|.+||+.++..
T Consensus       280 ~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~  358 (417)
T TIGR02800       280 DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE  358 (417)
T ss_pred             CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence            3467899999988776653 3  68888887765433 322211    1222   6777777765   789999977654


Q ss_pred             E
Q psy12376         74 V   74 (89)
Q Consensus        74 ~   74 (89)
                      .
T Consensus       359 ~  359 (417)
T TIGR02800       359 R  359 (417)
T ss_pred             E
Confidence            3

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.76  E-value=0.0042  Score=41.22  Aligned_cols=39  Identities=21%  Similarity=0.190  Sum_probs=34.1

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEe
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVL   42 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~   42 (89)
                      .+.|..|..||||+.||+..-+|.|.+|++.+-+..+.+
T Consensus       229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            467999999999999999999999999999887665554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=96.75  E-value=0.041  Score=42.67  Aligned_cols=67  Identities=7%  Similarity=0.104  Sum_probs=49.5

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecC----------------Ccceeec----cEEEEEeCCCCEEEE
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGK----------------HTNTIVG----QVLAIGTARGNLTVY   66 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~----------------h~~~i~~----~~las~s~d~~v~iw   66 (89)
                      ...++++++|..+++-+.++.|++||..++........                +...|..    +++++-+.++.|++|
T Consensus       806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi  885 (1057)
T PLN02919        806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL  885 (1057)
T ss_pred             CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence            35899999999999999999999999988765433211                0011111    678888899999999


Q ss_pred             eCCCCEE
Q psy12376         67 NHMTSKR   73 (89)
Q Consensus        67 d~~~~~~   73 (89)
                      |+.++..
T Consensus       886 d~~~~~~  892 (1057)
T PLN02919        886 DLNKGEA  892 (1057)
T ss_pred             ECCCCcc
Confidence            9987754

>KOG1832|consensus

Probab=96.74  E-value=0.0027  Score=48.28  Aligned_cols=66  Identities=12%  Similarity=0.176  Sum_probs=50.3

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCC-CEEEEeCC
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARG-NLTVYNHM   69 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~-~v~iwd~~   69 (89)
                      ....+|++||.+-++|+.|+-.|.|++|++.+|........|+.+|+-        .+|-+++... -..+|+..
T Consensus      1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred             ccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence            345899999999999999999999999999999876667778777654        2333333333 56678774

>PRK00178 tolB translocation protein TolB; Provisional

Probab=96.69  E-value=0.031  Score=38.69  Aligned_cols=68  Identities=16%  Similarity=0.116  Sum_probs=41.0

Q ss_pred             EEEEEEccCCCEEEEE-eCCC--cEEEEeCCCCeEeeEecCCcc----eeec---cEEEEEe-CCC--CEEEEeCCCCEE
Q psy12376          7 IFLLQTSQVGQVLAIG-TARG--NLTVYNHMTSKRVPVLGKHTN----TIVG---QVLAIGT-ARG--NLTVYNHMTSKR   73 (89)
Q Consensus         7 i~~~~~spdg~~la~g-~~~g--~v~iwd~~~~~~~~~~~~h~~----~i~~---~~las~s-~d~--~v~iwd~~~~~~   73 (89)
                      ....+|||||+.|+.. ..+|  .|.+||..+++. ..+..+..    +...   +.|+..+ .++  .|+++|+.+++.
T Consensus       245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~  323 (430)
T PRK00178        245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA  323 (430)
T ss_pred             cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            4468999999988744 4455  688889988754 33443322    1111   4444443 333  577778876654


Q ss_pred             Ee
Q psy12376         74 VP   75 (89)
Q Consensus        74 ~~   75 (89)
                      ..
T Consensus       324 ~~  325 (430)
T PRK00178        324 ER  325 (430)
T ss_pred             EE
Confidence            43

>KOG3914|consensus

Probab=96.67  E-value=0.002  Score=44.34  Aligned_cols=40  Identities=10%  Similarity=0.190  Sum_probs=33.3

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEe
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVL   42 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~   42 (89)
                      +|++-|..++.-++. .|++|+.|+++++||.++|+.+.++
T Consensus       192 GH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  192 GHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             ccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCccccc
Confidence            677778888888774 5899999999999999999876543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.63  E-value=0.094  Score=36.11  Aligned_cols=71  Identities=18%  Similarity=0.159  Sum_probs=50.0

Q ss_pred             EEEEEEccCCCEEEEEe----------CCCcEEEEeCCCCeEeeEec-CCcc-ee--ec--c-EEEEE-eCCCCEEEEeC
Q psy12376          7 IFLLQTSQVGQVLAIGT----------ARGNLTVYNHMTSKRVPVLG-KHTN-TI--VG--Q-VLAIG-TARGNLTVYNH   68 (89)
Q Consensus         7 i~~~~~spdg~~la~g~----------~~g~v~iwd~~~~~~~~~~~-~h~~-~i--~~--~-~las~-s~d~~v~iwd~   68 (89)
                      +.-++++|+|+.+....          ..+.|.++|..+++.+..+. ++.- .|  ..  + +|... ..++.|.+.|.
T Consensus       250 ~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       250 WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence            44599999998777632          22489999999999888765 3211 12  22  4 55544 46888999999


Q ss_pred             CCCEEEeee
Q psy12376         69 MTSKRVPVL   77 (89)
Q Consensus        69 ~~~~~~~~l   77 (89)
                      .+++.+..+
T Consensus       330 ~t~k~i~~i  338 (352)
T TIGR02658       330 ETGKELSSV  338 (352)
T ss_pred             cCCeEEeee
Confidence            999888876

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1524|consensus

Probab=96.63  E-value=0.0076  Score=43.50  Aligned_cols=48  Identities=10%  Similarity=0.113  Sum_probs=38.7

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG   51 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~   51 (89)
                      |.+-|.++.|+|....+++|+.|-..++||.. |..+..-..|..+|++
T Consensus       185 HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITS  232 (737)
T KOG1524|consen  185 HDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITS  232 (737)
T ss_pred             cCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceee
Confidence            45568999999999999999999999999986 4444445567777765

>KOG1912|consensus

Probab=96.61  E-value=0.012  Score=44.22  Aligned_cols=74  Identities=11%  Similarity=0.144  Sum_probs=57.1

Q ss_pred             cCCcEEEEEEccCC------------CEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----------cEEEEEeC
Q psy12376          3 LRYYIFLLQTSQVG------------QVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----------QVLAIGTA   59 (89)
Q Consensus         3 ~~~~i~~~~~spdg------------~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----------~~las~s~   59 (89)
                      |+..|+.+.|.|-.            ..||++.-.|.|.+||...+..+..++.|.+++..           ..|+.-..
T Consensus        54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~  133 (1062)
T KOG1912|consen   54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHG  133 (1062)
T ss_pred             CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecC
Confidence            45568899997632            25678888999999999888777777777776654           46666677


Q ss_pred             CCCEEEEeCCCCEEEee
Q psy12376         60 RGNLTVYNHMTSKRVPV   76 (89)
Q Consensus        60 d~~v~iwd~~~~~~~~~   76 (89)
                      -.++.+||..+|+...+
T Consensus       134 ss~lvLwntdtG~k~Wk  150 (1062)
T KOG1912|consen  134 SSTLVLWNTDTGEKFWK  150 (1062)
T ss_pred             CcEEEEEEccCCceeec
Confidence            88999999999987654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=96.58  E-value=0.02  Score=40.00  Aligned_cols=70  Identities=16%  Similarity=0.134  Sum_probs=40.9

Q ss_pred             EEEEEEccCCCEEEEEeC-CCcEEEE--eCCC-CeEeeEecCCcc----eeec---cEEEEEeCC---CCEEEEeCCCCE
Q psy12376          7 IFLLQTSQVGQVLAIGTA-RGNLTVY--NHMT-SKRVPVLGKHTN----TIVG---QVLAIGTAR---GNLTVYNHMTSK   72 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~-~g~v~iw--d~~~-~~~~~~~~~h~~----~i~~---~~las~s~d---~~v~iwd~~~~~   72 (89)
                      ....+|||||+.|+..+. +|...+|  +... +.....+..+..    +..+   ++|+..+.+   ..|++||+.+++
T Consensus       283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~  362 (428)
T PRK01029        283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR  362 (428)
T ss_pred             cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            356799999998887664 5654555  4432 222333433222    2222   566655443   369999998876


Q ss_pred             EEee
Q psy12376         73 RVPV   76 (89)
Q Consensus        73 ~~~~   76 (89)
                      ....
T Consensus       363 ~~~L  366 (428)
T PRK01029        363 DYQL  366 (428)
T ss_pred             eEEc
Confidence            6543

>KOG2315|consensus

Probab=96.55  E-value=0.023  Score=40.88  Aligned_cols=68  Identities=9%  Similarity=0.168  Sum_probs=48.8

Q ss_pred             cEEEEEEccCCCEEEEEe---CCCcEEEEeCCCCeEeeEecCCcceeec-----cEEEEEeC------CCCEEEEeCCCC
Q psy12376          6 YIFLLQTSQVGQVLAIGT---ARGNLTVYNHMTSKRVPVLGKHTNTIVG-----QVLAIGTA------RGNLTVYNHMTS   71 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~---~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----~~las~s~------d~~v~iwd~~~~   71 (89)
                      +=..+-|+|.|++|+.++   -.|.+.+||+.+.+++..+..-...+..     .+|.+++.      |+.+.||+.. |
T Consensus       313 pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G  391 (566)
T KOG2315|consen  313 PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-G  391 (566)
T ss_pred             CccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-C
Confidence            345788999999887654   3689999999998877776654444333     67766654      6889999985 4


Q ss_pred             EEE
Q psy12376         72 KRV   74 (89)
Q Consensus        72 ~~~   74 (89)
                      ..+
T Consensus       392 ~~l  394 (566)
T KOG2315|consen  392 SLL  394 (566)
T ss_pred             cee
Confidence            443

>KOG2314|consensus

Probab=96.54  E-value=0.0089  Score=43.23  Aligned_cols=68  Identities=13%  Similarity=0.098  Sum_probs=48.6

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcc--eeec----cEEEEEeC-----------CCCEEEEeCCC
Q psy12376          8 FLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTN--TIVG----QVLAIGTA-----------RGNLTVYNHMT   70 (89)
Q Consensus         8 ~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~--~i~~----~~las~s~-----------d~~v~iwd~~~   70 (89)
                      +.+.|||-|.+|++-... .|.+|-..+...++.+. |.+  .|..    +||+|=|.           -..+.|||+++
T Consensus       214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~-Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t  291 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFY-HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT  291 (698)
T ss_pred             eeEEecCCceEEEEEecc-ceeeecCccHHHHHhcc-CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence            679999999999997765 57889877755555542 433  2222    78887653           25789999999


Q ss_pred             CEEEeee
Q psy12376         71 SKRVPVL   77 (89)
Q Consensus        71 ~~~~~~l   77 (89)
                      |.....+
T Consensus       292 G~lkrsF  298 (698)
T KOG2314|consen  292 GLLKRSF  298 (698)
T ss_pred             cchhcce
Confidence            9876654

>KOG2041|consensus

Probab=96.52  E-value=0.0093  Score=44.55  Aligned_cols=68  Identities=19%  Similarity=0.208  Sum_probs=52.9

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCe----E-----------eeEecCCcceeec-------cEEEEEeCCCC
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSK----R-----------VPVLGKHTNTIVG-------QVLAIGTARGN   62 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~----~-----------~~~~~~h~~~i~~-------~~las~s~d~~   62 (89)
                      -.+.|++|.....++|+|+.||.+++..+.+..    .           ...+.+|+..|.-       +.|-+...+|-
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            358899999999999999999999998875421    1           2346788887664       67888899999


Q ss_pred             EEEEeCCCCE
Q psy12376         63 LTVYNHMTSK   72 (89)
Q Consensus        63 v~iwd~~~~~   72 (89)
                      |.+|=+-.+.
T Consensus        95 IiVWmlykgs  104 (1189)
T KOG2041|consen   95 IIVWMLYKGS  104 (1189)
T ss_pred             EEEEeeeccc
Confidence            9998764444

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=96.45  E-value=0.062  Score=38.56  Aligned_cols=71  Identities=15%  Similarity=0.104  Sum_probs=56.0

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCC-cEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARG-NLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g-~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      +++..|....+.-+++-++.|+.|| .+-|+|.++++..+.. +.-+.|.+       ++++.+-....+.+.|++++..
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e-~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE-KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee-CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence            4566688889999999999999999 9999999998754443 33344544       7788888888999999987765

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.44  E-value=0.056  Score=37.70  Aligned_cols=71  Identities=15%  Similarity=0.231  Sum_probs=48.9

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEee-------------------------------------------Ee
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVP-------------------------------------------VL   42 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~-------------------------------------------~~   42 (89)
                      .|+.+.|+++-.-||+|..+|.|.||.-...+...                                           .+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            48999999998899999999999998743221110                                           01


Q ss_pred             cCCcceeec------cEEEEEeCCCCEEEEeCCCCEEEee
Q psy12376         43 GKHTNTIVG------QVLAIGTARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus        43 ~~h~~~i~~------~~las~s~d~~v~iwd~~~~~~~~~   76 (89)
                      ...+++|.+      .++|.|.++|.+.|-|++....+..
T Consensus        83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~  122 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYN  122 (395)
T ss_dssp             ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEee
Confidence            112234444      7999999999999999988777654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=96.41  E-value=0.0054  Score=44.08  Aligned_cols=31  Identities=19%  Similarity=0.392  Sum_probs=28.1

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTS   36 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~   36 (89)
                      ..+.++|+|+|..+++|+..|.+.+||+.-+
T Consensus       301 ~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  301 IPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            3678999999999999999999999998754

>KOG2066|consensus

Probab=96.39  E-value=0.027  Score=42.12  Aligned_cols=74  Identities=18%  Similarity=0.235  Sum_probs=53.3

Q ss_pred             CCcEEEEEEccC-----CCEEEEEeCCCcEEEEeCCC-CeEee-EecCCcceeec-----cEEEEEeCCCCEEEEeCCCC
Q psy12376          4 RYYIFLLQTSQV-----GQVLAIGTARGNLTVYNHMT-SKRVP-VLGKHTNTIVG-----QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         4 ~~~i~~~~~spd-----g~~la~g~~~g~v~iwd~~~-~~~~~-~~~~h~~~i~~-----~~las~s~d~~v~iwd~~~~   71 (89)
                      .-++-+++++||     .+++++|+..| +.++..+= |.... .+....++|.+     +++|=++++| |+|||+..+
T Consensus       112 ~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~  189 (846)
T KOG2066|consen  112 KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTR  189 (846)
T ss_pred             CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCC-cEEEecccc
Confidence            346889999999     46889999999 88876431 22222 34455677877     7888876666 999999888


Q ss_pred             EEEeeeCC
Q psy12376         72 KRVPVLGK   79 (89)
Q Consensus        72 ~~~~~l~~   79 (89)
                      +++..+..
T Consensus       190 ~~l~~i~~  197 (846)
T KOG2066|consen  190 QRLTNIPP  197 (846)
T ss_pred             ceeeccCC
Confidence            88776654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=96.38  E-value=0.089  Score=37.81  Aligned_cols=71  Identities=14%  Similarity=0.069  Sum_probs=52.0

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeC----CCCEEEEeCCCCEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTA----RGNLTVYNHMTSKR   73 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~----d~~v~iwd~~~~~~   73 (89)
                      ..|.++..+|||++++.+....++.+.|+.+|.....-+..-+.|..       ..+|.+=-    -..|+++|...++.
T Consensus       402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence            35889999999999999999999999999998753333333333433       56665533    44789999988776


Q ss_pred             Ee
Q psy12376         74 VP   75 (89)
Q Consensus        74 ~~   75 (89)
                      ..
T Consensus       482 y~  483 (668)
T COG4946         482 YD  483 (668)
T ss_pred             EE
Confidence            54

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.36  E-value=0.014  Score=38.80  Aligned_cols=31  Identities=26%  Similarity=0.262  Sum_probs=27.9

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMTSK   37 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~~~   37 (89)
                      -..++||||+..||.+...|+|.+||....+
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~   76 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE   76 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence            5789999999999999999999999987543

>KOG4497|consensus

Probab=96.34  E-value=0.031  Score=38.35  Aligned_cols=71  Identities=10%  Similarity=0.029  Sum_probs=52.9

Q ss_pred             CcEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          5 YYIFLLQTSQVGQVLAIG-TARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g-~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      +.|..+.|..|..+++++ ..++.|.+|++..-+....+.....++.+        .+|-+.+-|-.|.+|.+.+.+...
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            457789999999877655 55889999999876655555544444433        678888999999999998766544

>KOG2315|consensus

Probab=96.33  E-value=0.054  Score=39.07  Aligned_cols=73  Identities=18%  Similarity=0.188  Sum_probs=50.5

Q ss_pred             CCcEEEEEEccCCCEEE--EEeCCCcEEEEeCCCCeEeeEec-CCcceeec----cEEEEEeCC---CCEEEEeCCCCEE
Q psy12376          4 RYYIFLLQTSQVGQVLA--IGTARGNLTVYNHMTSKRVPVLG-KHTNTIVG----QVLAIGTAR---GNLTVYNHMTSKR   73 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la--~g~~~g~v~iwd~~~~~~~~~~~-~h~~~i~~----~~las~s~d---~~v~iwd~~~~~~   73 (89)
                      .++|.++.|+|+|.-|+  .|-.-..+.|||.+. +.+..+. +-...+..    ++|+.||-+   |.|.|||+.+.++
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~  348 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL  348 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh
Confidence            46899999999997554  555677999999874 5555553 22222322    677766654   6999999987666


Q ss_pred             Eeee
Q psy12376         74 VPVL   77 (89)
Q Consensus        74 ~~~l   77 (89)
                      +..+
T Consensus       349 i~~~  352 (566)
T KOG2315|consen  349 IAKF  352 (566)
T ss_pred             cccc
Confidence            6544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.33  E-value=0.079  Score=33.28  Aligned_cols=65  Identities=23%  Similarity=0.248  Sum_probs=46.8

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEeeEe-cCCcc------e--ee--ccEEEEEeCCCCEEEEeCCCCEEEeeeCC
Q psy12376         15 VGQVLAIGTARGNLTVYNHMTSKRVPVL-GKHTN------T--IV--GQVLAIGTARGNLTVYNHMTSKRVPVLGK   79 (89)
Q Consensus        15 dg~~la~g~~~g~v~iwd~~~~~~~~~~-~~h~~------~--i~--~~~las~s~d~~v~iwd~~~~~~~~~l~~   79 (89)
                      ++..++.++.++.+..+|..+|+.+... .....      .  ..  .+.++.+..++.|..+|+++|+.+.....
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred             cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence            4556677778889999999999988773 32211      0  00  16788888899999999999998766543

...

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=96.31  E-value=0.097  Score=40.71  Aligned_cols=71  Identities=8%  Similarity=0.060  Sum_probs=48.0

Q ss_pred             EEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEeeEe-------------cC-----------Ccceeec----cEEEEE
Q psy12376          7 IFLLQTSQVGQ-VLAIGTARGNLTVYNHMTSKRVPVL-------------GK-----------HTNTIVG----QVLAIG   57 (89)
Q Consensus         7 i~~~~~spdg~-~la~g~~~g~v~iwd~~~~~~~~~~-------------~~-----------h~~~i~~----~~las~   57 (89)
                      ...++|+|+|. .+++.+.++.|++||..++......             ..           |...+..    +++++-
T Consensus       742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVAD  821 (1057)
T PLN02919        742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVAD  821 (1057)
T ss_pred             ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEE
Confidence            46799999998 4556666889999999876532111             00           1111111    678888


Q ss_pred             eCCCCEEEEeCCCCEEEeee
Q psy12376         58 TARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        58 s~d~~v~iwd~~~~~~~~~l   77 (89)
                      +.++.|++||..++......
T Consensus       822 s~N~rIrviD~~tg~v~tia  841 (1057)
T PLN02919        822 SYNHKIKKLDPATKRVTTLA  841 (1057)
T ss_pred             CCCCEEEEEECCCCeEEEEe
Confidence            89999999999887766543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.24  E-value=0.041  Score=26.55  Aligned_cols=30  Identities=17%  Similarity=0.237  Sum_probs=25.4

Q ss_pred             cEEEEEEccC-C--CEEEEEeCCCcEEEEeCCC
Q psy12376          6 YIFLLQTSQV-G--QVLAIGTARGNLTVYNHMT   35 (89)
Q Consensus         6 ~i~~~~~spd-g--~~la~g~~~g~v~iwd~~~   35 (89)
                      .+.++.|||+ +  .+||..=..|.|.|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            5889999984 4  5888888899999999995

It contains a characteristic DLL sequence motif.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=96.23  E-value=0.048  Score=37.56  Aligned_cols=60  Identities=18%  Similarity=0.257  Sum_probs=44.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEeeEecCCcc----eeec---cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         18 VLAIGTARGNLTVYNHMTSKRVPVLGKHTN----TIVG---QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        18 ~la~g~~~g~v~iwd~~~~~~~~~~~~h~~----~i~~---~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      ++++-..+|.|.+.|..+.+.+..+.....    ...+   +++..++.|+.|.++|+.+++.+..+
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i   74 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI   74 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE
Confidence            446667799999999999988888764322    2222   67777889999999999998887765

...

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.20  E-value=0.1  Score=35.89  Aligned_cols=66  Identities=11%  Similarity=0.096  Sum_probs=45.9

Q ss_pred             EccCCCEEEEEeC----------CCcEEEEeCCCCeEeeEecCCcc------------eeec--cEEEEEe-C-CCCEEE
Q psy12376         12 TSQVGQVLAIGTA----------RGNLTVYNHMTSKRVPVLGKHTN------------TIVG--QVLAIGT-A-RGNLTV   65 (89)
Q Consensus        12 ~spdg~~la~g~~----------~g~v~iwd~~~~~~~~~~~~h~~------------~i~~--~~las~s-~-d~~v~i   65 (89)
                      +||||+.|.++..          +..|.+||..+++.+..+.--.+            .+..  ++|.... . +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            9999998766655          77999999999998877652111            1111  4444332 3 788888


Q ss_pred             EeCCCCEEEeee
Q psy12376         66 YNHMTSKRVPVL   77 (89)
Q Consensus        66 wd~~~~~~~~~l   77 (89)
                      .|+.+++.+..+
T Consensus       133 vD~~~~kvv~ei  144 (352)
T TIGR02658       133 VDLEGKAFVRMM  144 (352)
T ss_pred             EECCCCcEEEEE
Confidence            888888777654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.19  E-value=0.076  Score=36.46  Aligned_cols=62  Identities=13%  Similarity=0.112  Sum_probs=39.4

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEeeEecC-----Ccceeec-cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         16 GQVLAIGTARGNLTVYNHMTSKRVPVLGK-----HTNTIVG-QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        16 g~~la~g~~~g~v~iwd~~~~~~~~~~~~-----h~~~i~~-~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      +..+..++.+|.+..+|..+|+.+.....     ...++.. .++..++.||.|++.|..+|+.+...
T Consensus       294 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~  361 (394)
T PRK11138        294 GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQ  361 (394)
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence            44566666777777777777765543221     1122222 67777888888888888888766543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=96.17  E-value=0.093  Score=36.91  Aligned_cols=68  Identities=18%  Similarity=0.110  Sum_probs=40.1

Q ss_pred             EEEEEEccCCCEEEE-EeCCCc--EEEEeCCCCeEeeEecCCcc----eeec---cEEEE-EeCCC--CEEEEeCCCCEE
Q psy12376          7 IFLLQTSQVGQVLAI-GTARGN--LTVYNHMTSKRVPVLGKHTN----TIVG---QVLAI-GTARG--NLTVYNHMTSKR   73 (89)
Q Consensus         7 i~~~~~spdg~~la~-g~~~g~--v~iwd~~~~~~~~~~~~h~~----~i~~---~~las-~s~d~--~v~iwd~~~~~~   73 (89)
                      ....+|||||+.|+. .+.+|.  |.++|..+++. ..+..+..    +...   +.|+. ...++  .|+++|+.+++.
T Consensus       264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~  342 (448)
T PRK04792        264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV  342 (448)
T ss_pred             cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            346799999998875 455664  88888887754 33433322    1111   44444 43344  466667776654


Q ss_pred             Ee
Q psy12376         74 VP   75 (89)
Q Consensus        74 ~~   75 (89)
                      ..
T Consensus       343 ~~  344 (448)
T PRK04792        343 SR  344 (448)
T ss_pred             EE
Confidence            43

>KOG4497|consensus

Probab=96.10  E-value=0.0074  Score=41.30  Aligned_cols=74  Identities=11%  Similarity=0.081  Sum_probs=49.9

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEec---C--Ccce-eec-cEEEEEeCCCCEEEEeCCCCEEEeeeCCCC
Q psy12376          9 LLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLG---K--HTNT-IVG-QVLAIGTARGNLTVYNHMTSKRVPVLGKHT   81 (89)
Q Consensus         9 ~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~---~--h~~~-i~~-~~las~s~d~~v~iwd~~~~~~~~~l~~h~   81 (89)
                      .+.|||+|+++|+.+.. .+.|.|..+-+....+.   .  |-.. ... -+|.....|+.|.+|++...+-...+..-+
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~   91 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ   91 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence            57899999999998766 88888888765422211   0  1000 001 466777899999999998877777665444


Q ss_pred             CC
Q psy12376         82 KS   83 (89)
Q Consensus        82 ~~   83 (89)
                      ..
T Consensus        92 ag   93 (447)
T KOG4497|consen   92 AG   93 (447)
T ss_pred             Cc
Confidence            43

>KOG1409|consensus

Probab=95.99  E-value=0.14  Score=35.33  Aligned_cols=47  Identities=13%  Similarity=0.201  Sum_probs=37.0

Q ss_pred             eeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCC-EEEeeeCCCCCCCc
Q psy12376         39 VPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTS-KRVPVLGKHTKSKP   85 (89)
Q Consensus        39 ~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~-~~~~~l~~h~~~~~   85 (89)
                      +..+.+|.+.+.+       ..+.+|..|..+.+||+..+ .....+.+|.+++.
T Consensus       190 i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~  244 (404)
T KOG1409|consen  190 ITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ  244 (404)
T ss_pred             EEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh
Confidence            5556778888877       79999999999999999643 45567788887764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.97  E-value=0.067  Score=36.73  Aligned_cols=63  Identities=16%  Similarity=0.176  Sum_probs=47.3

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEeeEecCCc----ceeec-cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376         16 GQVLAIGTARGNLTVYNHMTSKRVPVLGKHT----NTIVG-QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus        16 g~~la~g~~~g~v~iwd~~~~~~~~~~~~h~----~~i~~-~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      +..+..++.+|.+..+|..+|+.+.......    .++.. ..+..+..++.|+.+|.++|+..-...
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~  187 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVN  187 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence            4567778889999999999999877654322    22222 667778889999999999998876553

>KOG2314|consensus

Probab=95.86  E-value=0.093  Score=38.23  Aligned_cols=63  Identities=13%  Similarity=0.145  Sum_probs=44.7

Q ss_pred             EEEEEEccCCCEEEEEeC-----------CCcEEEEeCCCCeEeeEecCCcc-----eeec-----cEEEEEeCCCCEEE
Q psy12376          7 IFLLQTSQVGQVLAIGTA-----------RGNLTVYNHMTSKRVPVLGKHTN-----TIVG-----QVLAIGTARGNLTV   65 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~-----------~g~v~iwd~~~~~~~~~~~~h~~-----~i~~-----~~las~s~d~~v~i   65 (89)
                      +..+.|||.-++|++=+.           ...++|||+++|...+.+..-..     ++.-     +|+|.-.. .+|.|
T Consensus       252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisI  330 (698)
T KOG2314|consen  252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISI  330 (698)
T ss_pred             ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEE
Confidence            789999999999987532           25899999999988776654211     2211     67776555 56889


Q ss_pred             EeCCC
Q psy12376         66 YNHMT   70 (89)
Q Consensus        66 wd~~~   70 (89)
                      |+...
T Consensus       331 yEtps  335 (698)
T KOG2314|consen  331 YETPS  335 (698)
T ss_pred             EecCc
Confidence            88744

>KOG2139|consensus

Probab=95.86  E-value=0.064  Score=37.20  Aligned_cols=29  Identities=24%  Similarity=0.202  Sum_probs=26.0

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeC
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNH   33 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~   33 (89)
                      ..++-+.|||||.+|.+++-|+..++|+-
T Consensus       239 gg~slLkwSPdgd~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  239 GGFSLLKWSPDGDVLFAATCDAVFRLWQE  267 (445)
T ss_pred             CceeeEEEcCCCCEEEEecccceeeeehh
Confidence            35789999999999999999999999954

>KOG4714|consensus

Probab=95.85  E-value=0.028  Score=37.42  Aligned_cols=33  Identities=15%  Similarity=0.102  Sum_probs=29.2

Q ss_pred             cCCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCC
Q psy12376          3 LRYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMT   35 (89)
Q Consensus         3 ~~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~   35 (89)
                      |+.+++-+-|+| +++.|.+++.||.+-.||..+
T Consensus       222 hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  222 HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            566789999999 678999999999999999874

>KOG4649|consensus

Probab=95.85  E-value=0.062  Score=35.98  Aligned_cols=63  Identities=17%  Similarity=0.142  Sum_probs=48.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEeeEecCCc---c-eeec---cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         15 VGQVLAIGTARGNLTVYNHMTSKRVPVLGKHT---N-TIVG---QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        15 dg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~---~-~i~~---~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      -|.+++.|+.+|.+++.+..+|.++..++.-.   - +..+   .++-.|+.|++++.-|.++...+-+.
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks  131 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS  131 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence            47889999999999999999997776654321   1 1222   78999999999999999877666543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.72  E-value=0.18  Score=35.22  Aligned_cols=65  Identities=22%  Similarity=0.332  Sum_probs=46.8

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEe--cC-----C-cceeec---------------cEEEEEeCC
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVL--GK-----H-TNTIVG---------------QVLAIGTAR   60 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~--~~-----h-~~~i~~---------------~~las~s~d   60 (89)
                      +++|++++.|.-| |+|+|..+|.+.|.|+|.-..+..-  ..     . ...+.+               -.+..|.+.
T Consensus        86 ~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~  164 (395)
T PF08596_consen   86 QGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS  164 (395)
T ss_dssp             S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred             CCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence            5789999998776 9999999999999999987665431  11     1 111222               578888899


Q ss_pred             CCEEEEeCC
Q psy12376         61 GNLTVYNHM   69 (89)
Q Consensus        61 ~~v~iwd~~   69 (89)
                      |.+.+|.+.
T Consensus       165 G~v~~fkIl  173 (395)
T PF08596_consen  165 GNVLTFKIL  173 (395)
T ss_dssp             SEEEEEEEE
T ss_pred             CCEEEEEEe
Confidence            999999874

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.64  E-value=0.057  Score=40.77  Aligned_cols=62  Identities=18%  Similarity=0.392  Sum_probs=44.1

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec------cEEEEEeCCCCEEEEeC
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~------~~las~s~d~~v~iwd~   68 (89)
                      .++|++-+.+| +||+|+.+|.|++||.-..+....+.+-..+|..      ..-+-|..+..|.+.+.
T Consensus       579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             CceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence            47888888888 8899999999999995433333455666677765      23333456777888886

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG0882|consensus

Probab=95.54  E-value=0.034  Score=39.48  Aligned_cols=76  Identities=24%  Similarity=0.243  Sum_probs=57.0

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecC--------------------------------Ccce----
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGK--------------------------------HTNT----   48 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~--------------------------------h~~~----   48 (89)
                      ...+++.|+|+|..++.-..|-.|++++..+|+.++.+..                                |...    
T Consensus       202 t~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~  281 (558)
T KOG0882|consen  202 TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTN  281 (558)
T ss_pred             cCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccce
Confidence            4578999999999999999999999999999987543211                                1110    


Q ss_pred             -eec---cEEEEEeCCCCEEEEeCCCCEEEeeeCCCC
Q psy12376         49 -IVG---QVLAIGTARGNLTVYNHMTSKRVPVLGKHT   81 (89)
Q Consensus        49 -i~~---~~las~s~d~~v~iwd~~~~~~~~~l~~h~   81 (89)
                       +-+   ++|..|+-=| |.+.|+.++.+...+++-.
T Consensus       282 ~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e  317 (558)
T KOG0882|consen  282 AVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDE  317 (558)
T ss_pred             eEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccch
Confidence             000   6777776665 8899999999988887644

>PRK02888 nitrous-oxide reductase; Validated

Probab=95.53  E-value=0.084  Score=38.91  Aligned_cols=66  Identities=11%  Similarity=-0.020  Sum_probs=46.7

Q ss_pred             CcEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeE------------eeEecCCcceeec------cEEEEEeCCCCEEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTA-RGNLTVYNHMTSKR------------VPVLGKHTNTIVG------QVLAIGTARGNLTV   65 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~-~g~v~iwd~~~~~~------------~~~~~~h~~~i~~------~~las~s~d~~v~i   65 (89)
                      .....+++||||++++++.. +.++.|.|....+.            +.+..--.+++..      +.+.|--.|..|..
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~k  400 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVK  400 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEE
Confidence            44678999999998876665 88999999987542            2333222333332      56777778889999


Q ss_pred             EeCCC
Q psy12376         66 YNHMT   70 (89)
Q Consensus        66 wd~~~   70 (89)
                      ||+..
T Consensus       401 wn~~~  405 (635)
T PRK02888        401 WNIEA  405 (635)
T ss_pred             EehHH
Confidence            99875

>KOG2114|consensus

Probab=95.48  E-value=0.061  Score=40.69  Aligned_cols=58  Identities=16%  Similarity=0.142  Sum_probs=44.6

Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcce-eec-------cEEEEEeCCCC-----EEEEeCC
Q psy12376         11 QTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNT-IVG-------QVLAIGTARGN-----LTVYNHM   69 (89)
Q Consensus        11 ~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~-i~~-------~~las~s~d~~-----v~iwd~~   69 (89)
                      .|++.+..+|.|+.+|.|.+.+-+ -+.++.++.+... +..       ++|++-++|..     |+|||++
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le  100 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE  100 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence            578899999999999999998753 4455777776655 332       58888877765     8999995

>KOG0309|consensus

Probab=95.37  E-value=0.045  Score=41.16  Aligned_cols=84  Identities=15%  Similarity=0.085  Sum_probs=56.9

Q ss_pred             CcCCcEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCe-EeeEec-CCcc--eee--c---cEEEEEeCCCCEEEEeCC-C
Q psy12376          2 NLRYYIFLLQTSQVG-QVLAIGTARGNLTVYNHMTSK-RVPVLG-KHTN--TIV--G---QVLAIGTARGNLTVYNHM-T   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg-~~la~g~~~g~v~iwd~~~~~-~~~~~~-~h~~--~i~--~---~~las~s~d~~v~iwd~~-~   70 (89)
                      +|...++.+.|.|.- ..+|+.+.|-.+..||+++-. .+..+. -|+.  .|.  .   ..+|+ +..+.|.+||.+ .
T Consensus       112 ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~g  190 (1081)
T KOG0309|consen  112 GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKG  190 (1081)
T ss_pred             cCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh-ccCCceEEEeccCC
Confidence            456679999999965 488999999999999998733 222211 1221  111  1   34444 677789999997 4


Q ss_pred             CEEEeeeCCCCCCCcC
Q psy12376         71 SKRVPVLGKHTKSKPS   86 (89)
Q Consensus        71 ~~~~~~l~~h~~~~~~   86 (89)
                      +.....+.+|..++++
T Consensus       191 s~pl~s~K~~vs~vn~  206 (1081)
T KOG0309|consen  191 STPLCSLKGHVSSVNS  206 (1081)
T ss_pred             CcceEEecccceeeeh
Confidence            5677778888777664

>KOG2066|consensus

Probab=95.30  E-value=0.096  Score=39.38  Aligned_cols=17  Identities=29%  Similarity=0.532  Sum_probs=8.5

Q ss_pred             CEEEEEeCCCcEEEEeC
Q psy12376         17 QVLAIGTARGNLTVYNH   33 (89)
Q Consensus        17 ~~la~g~~~g~v~iwd~   33 (89)
                      ++|+.|+-+|.|++++.
T Consensus        50 ~~~~~GtH~g~v~~~~~   66 (846)
T KOG2066|consen   50 KFFALGTHRGAVYLTTC   66 (846)
T ss_pred             ceeeeccccceEEEEec
Confidence            45555555555555544

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=95.21  E-value=0.11  Score=23.80  Aligned_cols=27  Identities=15%  Similarity=0.059  Sum_probs=17.9

Q ss_pred             CcEEEEEEccCCCEEEEEeC-C--CcEEEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTA-R--GNLTVY   31 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~-~--g~v~iw   31 (89)
                      ..-....|||||+.|+-.+. +  |...||
T Consensus         9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34678899999998876554 3  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG3617|consensus

Probab=95.13  E-value=0.016  Score=44.12  Aligned_cols=64  Identities=23%  Similarity=0.157  Sum_probs=55.3

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCC
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~   69 (89)
                      .+++++|+|..-.||.|..-|.+.+|...+.+.-.....|..+|.-       +.+.++..-|.|.+|...
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            3678999999889999999999999999887766666678877654       789999999999999986

>KOG4190|consensus

Probab=95.12  E-value=0.025  Score=41.35  Aligned_cols=67  Identities=15%  Similarity=0.218  Sum_probs=52.6

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceee---c---cEEEEEeCCCCEEE-EeCCCCE
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV---G---QVLAIGTARGNLTV-YNHMTSK   72 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~---~---~~las~s~d~~v~i-wd~~~~~   72 (89)
                      -+.+++..|.|+.+|++-.+|.+.+.|.++|+.+..+.+..--+.   +   +.++....|.++.+ |-..++.
T Consensus       878 ~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgi  951 (1034)
T KOG4190|consen  878 LTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGI  951 (1034)
T ss_pred             heeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCe
Confidence            377999999999999999999999999999998887754321110   1   67888888999999 8776554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.02  E-value=0.54  Score=30.20  Aligned_cols=64  Identities=22%  Similarity=0.164  Sum_probs=40.3

Q ss_pred             EccCCCEEEEEeCCCcEEEEeCCCCeEeeE-------ec-------CCcceee-c-----cEEEEEeCCCCEEEEeCCCC
Q psy12376         12 TSQVGQVLAIGTARGNLTVYNHMTSKRVPV-------LG-------KHTNTIV-G-----QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus        12 ~spdg~~la~g~~~g~v~iwd~~~~~~~~~-------~~-------~h~~~i~-~-----~~las~s~d~~v~iwd~~~~   71 (89)
                      +..++++|++-+.+|.+++||+.+++.+..       +.       .....|. +     ...+..-.+|..+.||..-+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~   97 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG   97 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence            446788999999999999999998876322       11       1122222 2     22222334678899988655


Q ss_pred             EEEe
Q psy12376         72 KRVP   75 (89)
Q Consensus        72 ~~~~   75 (89)
                      .-+.
T Consensus        98 ~W~~  101 (219)
T PF07569_consen   98 CWIR  101 (219)
T ss_pred             eeEE
Confidence            4444

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=95.02  E-value=0.14  Score=39.37  Aligned_cols=37  Identities=22%  Similarity=0.156  Sum_probs=30.7

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeE
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPV   41 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~   41 (89)
                      ...|.+++||||++.||..+.+|++.+.. ++.+.+.+
T Consensus       120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E  156 (928)
T PF04762_consen  120 DSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISE  156 (928)
T ss_pred             cCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEE
Confidence            34699999999999999999999999985 55665544

>PRK04043 tolB translocation protein TolB; Provisional

Probab=94.90  E-value=0.87  Score=31.98  Aligned_cols=70  Identities=14%  Similarity=0.133  Sum_probs=41.1

Q ss_pred             cEEEEEEccCCCE-EEEEeC---CCcEEEEeCCCCeEeeEec--CCcc-eeec----cEEEEEeCC--CCEEEEeCCCCE
Q psy12376          6 YIFLLQTSQVGQV-LAIGTA---RGNLTVYNHMTSKRVPVLG--KHTN-TIVG----QVLAIGTAR--GNLTVYNHMTSK   72 (89)
Q Consensus         6 ~i~~~~~spdg~~-la~g~~---~g~v~iwd~~~~~~~~~~~--~h~~-~i~~----~~las~s~d--~~v~iwd~~~~~   72 (89)
                      ....-.|||||+. ++..+.   +..|.++|..+|+......  +... +-.+    .++++.+.+  ..|+++|+.++.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            4567899999985 654433   3579999998876533222  2111 1111    344444434  567778887776


Q ss_pred             EEe
Q psy12376         73 RVP   75 (89)
Q Consensus        73 ~~~   75 (89)
                      ..+
T Consensus       269 ~~~  271 (419)
T PRK04043        269 LTQ  271 (419)
T ss_pred             EEE
Confidence            443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=94.87  E-value=0.13  Score=36.95  Aligned_cols=73  Identities=12%  Similarity=0.102  Sum_probs=48.8

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcc--eeec----cEEEEEeCCC---------------CEE
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTN--TIVG----QVLAIGTARG---------------NLT   64 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~--~i~~----~~las~s~d~---------------~v~   64 (89)
                      ++..++|||.|.+|++.... .|.+|+...+..+..+. |..  .+..    +||++=+...               .+.
T Consensus        34 p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~  111 (561)
T COG5354          34 PVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVF  111 (561)
T ss_pred             chhheeecCcchheehhhcc-ceEEccccchhheeeee-cCCceecccCcccceeeeeccCCccChhhccCCccccCcee
Confidence            57789999999999987655 68889887655444332 211  1111    5565544333               599


Q ss_pred             EEeCCCCEEEeeeCCC
Q psy12376         65 VYNHMTSKRVPVLGKH   80 (89)
Q Consensus        65 iwd~~~~~~~~~l~~h   80 (89)
                      +||+.++..+.....-
T Consensus       112 vwd~~sg~iv~sf~~~  127 (561)
T COG5354         112 VWDIASGMIVFSFNGI  127 (561)
T ss_pred             EEeccCceeEeecccc
Confidence            9999999988766543

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=94.66  E-value=0.25  Score=35.44  Aligned_cols=64  Identities=9%  Similarity=0.094  Sum_probs=40.3

Q ss_pred             cCCCEEEEEeCCCcEEEEeCCC----CeEeeEe--cCC--------------------cceee-----c------cEEEE
Q psy12376         14 QVGQVLAIGTARGNLTVYNHMT----SKRVPVL--GKH--------------------TNTIV-----G------QVLAI   56 (89)
Q Consensus        14 pdg~~la~g~~~g~v~iwd~~~----~~~~~~~--~~h--------------------~~~i~-----~------~~las   56 (89)
                      ++...|+++..||.+.......    +......  ..+                    .....     +      .++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4667899999999998888653    2221110  000                    01111     1      78999


Q ss_pred             EeCCCCEEEEeCCCCEEEeee
Q psy12376         57 GTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        57 ~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      -+.|+.+++||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999886543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=94.63  E-value=0.89  Score=30.81  Aligned_cols=71  Identities=17%  Similarity=0.194  Sum_probs=43.2

Q ss_pred             cEEEEEEccCCCEEEEEe-CCCcEEEEeCC--CCeE--eeEecCCcc---eeec----cEEE-EEeCCCCEEEEeC--CC
Q psy12376          6 YIFLLQTSQVGQVLAIGT-ARGNLTVYNHM--TSKR--VPVLGKHTN---TIVG----QVLA-IGTARGNLTVYNH--MT   70 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~-~~g~v~iwd~~--~~~~--~~~~~~h~~---~i~~----~~la-s~s~d~~v~iwd~--~~   70 (89)
                      ....+.+||||++|.++. ....|.+|++.  +|+.  +..+.....   .+..    ++|+ +.-.++.|.+|++  ++
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t  325 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT  325 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence            467899999999887665 46689999983  3432  222221111   1111    5544 5557779999977  46


Q ss_pred             CEEEee
Q psy12376         71 SKRVPV   76 (89)
Q Consensus        71 ~~~~~~   76 (89)
                      |.....
T Consensus       326 G~l~~~  331 (345)
T PF10282_consen  326 GKLTPV  331 (345)
T ss_dssp             TEEEEE
T ss_pred             CcEEEe
Confidence            665543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG3621|consensus

Probab=94.35  E-value=0.077  Score=39.32  Aligned_cols=33  Identities=18%  Similarity=0.220  Sum_probs=29.5

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMT   35 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~   35 (89)
                      |+..|++++|++|+..+.+|...|+|.+-...+
T Consensus       123 ~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  123 HKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            567899999999999999999999998877655

>KOG2444|consensus

Probab=94.29  E-value=0.17  Score=32.94  Aligned_cols=66  Identities=20%  Similarity=0.296  Sum_probs=45.8

Q ss_pred             CCEEEEEeCCCcEEEEeCCC-CeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCCCEEEeeeCCCC
Q psy12376         16 GQVLAIGTARGNLTVYNHMT-SKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMTSKRVPVLGKHT   81 (89)
Q Consensus        16 g~~la~g~~~g~v~iwd~~~-~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~~~~~~~l~~h~   81 (89)
                      +..+++|+.+|.|.+|+... |.....+..-...|.+        .+..++..|+.|+.|++.-++.+-..+.|.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~  144 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN  144 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence            35789999999999998762 1111111111122222        488888999999999999888888888887

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.16  E-value=0.81  Score=33.10  Aligned_cols=53  Identities=17%  Similarity=0.251  Sum_probs=39.2

Q ss_pred             CCcEEEEeCCCCeEeeEecC----Ccceeec--cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         25 RGNLTVYNHMTSKRVPVLGK----HTNTIVG--QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        25 ~g~v~iwd~~~~~~~~~~~~----h~~~i~~--~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      .|.+.-+|+.+|+.+...+.    ..+.+..  .+++.++.||.++.+|.++|+.+-..
T Consensus       440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~  498 (527)
T TIGR03075       440 MGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKF  498 (527)
T ss_pred             ceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence            35788899999988776542    1233332  67777888999999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.02  E-value=0.6  Score=35.13  Aligned_cols=66  Identities=17%  Similarity=0.239  Sum_probs=42.5

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCC-C--------eE---eeEec--------CCcceeec----------cEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMT-S--------KR---VPVLG--------KHTNTIVG----------QVL   54 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~-~--------~~---~~~~~--------~h~~~i~~----------~~l   54 (89)
                      ..|..+..+|+|.++|..+..|.+.+.=.+. |        +.   ++.+.        .....|..          ..|
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            3688999999999999988877655544332 1        11   11111        11112211          677


Q ss_pred             EEEeCCCCEEEEeCCC
Q psy12376         55 AIGTARGNLTVYNHMT   70 (89)
Q Consensus        55 as~s~d~~v~iwd~~~   70 (89)
                      +.=..|+++++||+..
T Consensus       165 ~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISD  180 (717)
T ss_pred             EEEecCCEEEEEecCC
Confidence            7788999999999964

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2395|consensus

Probab=93.88  E-value=0.25  Score=35.95  Aligned_cols=62  Identities=11%  Similarity=0.284  Sum_probs=43.1

Q ss_pred             EEEEEEccCCCE-------EEEEeCCCcEEEEeCCC-Ce-EeeEecCCcc----eeec------cEEEEEeCCCCEEEEe
Q psy12376          7 IFLLQTSQVGQV-------LAIGTARGNLTVYNHMT-SK-RVPVLGKHTN----TIVG------QVLAIGTARGNLTVYN   67 (89)
Q Consensus         7 i~~~~~spdg~~-------la~g~~~g~v~iwd~~~-~~-~~~~~~~h~~----~i~~------~~las~s~d~~v~iwd   67 (89)
                      |.-+.+.|+.++       -+.|-.+..|+-||+|- ++ .+...++|+.    ...|      .++|.||.+|.|++||
T Consensus       378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYd  457 (644)
T KOG2395|consen  378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYD  457 (644)
T ss_pred             cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeeh
Confidence            566677776542       25778899999999984 33 3333344432    2233      8999999999999999


Q ss_pred             C
Q psy12376         68 H   68 (89)
Q Consensus        68 ~   68 (89)
                      -
T Consensus       458 r  458 (644)
T KOG2395|consen  458 R  458 (644)
T ss_pred             h
Confidence            7

>KOG3617|consensus

Probab=93.71  E-value=0.11  Score=39.76  Aligned_cols=33  Identities=21%  Similarity=0.087  Sum_probs=30.7

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHM   34 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~   34 (89)
                      .|+.+|..+.|||+|..++++..-|.+.+|...
T Consensus        99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            578889999999999999999999999999865

>KOG2444|consensus

Probab=93.68  E-value=0.13  Score=33.43  Aligned_cols=56  Identities=20%  Similarity=0.261  Sum_probs=39.9

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcc-ee----e--c-cEEEEE--eCCCCEEEEeCCC
Q psy12376         15 VGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTN-TI----V--G-QVLAIG--TARGNLTVYNHMT   70 (89)
Q Consensus        15 dg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~-~i----~--~-~~las~--s~d~~v~iwd~~~   70 (89)
                      ++.+..++..+|.++.|++.-++.+.....|+. +.    .  + .+++++  |.|..+..||++.
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            455788999999999999988887776666662 21    1  1 566666  6777777777753

>KOG0309|consensus

Probab=93.66  E-value=0.11  Score=39.10  Aligned_cols=63  Identities=6%  Similarity=0.106  Sum_probs=46.2

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCC-eEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCC
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMTS-KRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~~-~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~   69 (89)
                      -+-+.|+.-...+.+.+....|.+||.+.| ..+..+.+|...+..        ..+-+++.|++|.+||-.
T Consensus       161 asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~  232 (1081)
T KOG0309|consen  161 ASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS  232 (1081)
T ss_pred             CceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence            356788864344444455668999999865 455667778776665        678889999999999985

>smart00564 PQQ beta-propeller repeat

Probab=93.62  E-value=0.28  Score=21.37  Aligned_cols=24  Identities=17%  Similarity=0.264  Sum_probs=18.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEeeE
Q psy12376         18 VLAIGTARGNLTVYNHMTSKRVPV   41 (89)
Q Consensus        18 ~la~g~~~g~v~iwd~~~~~~~~~   41 (89)
                      .+.+++.+|.+..+|..+|+.+..
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEE
Confidence            566777888888888888876554

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=93.49  E-value=1.8  Score=30.29  Aligned_cols=38  Identities=26%  Similarity=0.219  Sum_probs=31.3

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEe
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVL   42 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~   42 (89)
                      .++..++.||+|+++|.-+.+|.+.+.+..-.+.+..+
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~  254 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF  254 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence            46999999999999999999999999887655544444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.46  E-value=0.84  Score=30.98  Aligned_cols=40  Identities=20%  Similarity=0.392  Sum_probs=31.6

Q ss_pred             cCCcEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeEeeEe
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTA-RGNLTVYNHMTSKRVPVL   42 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~-~g~v~iwd~~~~~~~~~~   42 (89)
                      +...+-+|+++++|..+|+.+- .|.+.+||..+|+.+...
T Consensus       215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~  255 (305)
T PF07433_consen  215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV  255 (305)
T ss_pred             hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence            3456889999999988866655 569999999999876644

>KOG1916|consensus

Probab=93.35  E-value=0.26  Score=38.08  Aligned_cols=64  Identities=16%  Similarity=0.142  Sum_probs=44.8

Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCC-CCeE----eeEecCCc-ceeec----------------cEEEEE-eCCCCEEEEe
Q psy12376         11 QTSQVGQVLAIGTARGNLTVYNHM-TSKR----VPVLGKHT-NTIVG----------------QVLAIG-TARGNLTVYN   67 (89)
Q Consensus        11 ~~spdg~~la~g~~~g~v~iwd~~-~~~~----~~~~~~h~-~~i~~----------------~~las~-s~d~~v~iwd   67 (89)
                      ..||||+.||....||.+..|.++ +|+.    +..+..|. .+..|                .+++++ .-+..+.+|.
T Consensus       242 ~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~  321 (1283)
T KOG1916|consen  242 SLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWA  321 (1283)
T ss_pred             eeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEee
Confidence            489999999999999999999876 4543    34556676 33333                344444 4566899999


Q ss_pred             CCCCEEE
Q psy12376         68 HMTSKRV   74 (89)
Q Consensus        68 ~~~~~~~   74 (89)
                      ....++.
T Consensus       322 ~a~w~Cl  328 (1283)
T KOG1916|consen  322 EAPWQCL  328 (1283)
T ss_pred             ccchhhh
Confidence            8765554

>KOG1275|consensus

Probab=92.94  E-value=0.63  Score=35.98  Aligned_cols=69  Identities=19%  Similarity=0.224  Sum_probs=51.1

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEeeEec--CCcceeec---cEEEEEeCCCCEEEEeCCCCEEEeeeCCCCCCCc
Q psy12376         17 QVLAIGTARGNLTVYNHMTSKRVPVLG--KHTNTIVG---QVLAIGTARGNLTVYNHMTSKRVPVLGKHTKSKP   85 (89)
Q Consensus        17 ~~la~g~~~g~v~iwd~~~~~~~~~~~--~h~~~i~~---~~las~s~d~~v~iwd~~~~~~~~~l~~h~~~~~   85 (89)
                      ..+.-|+-...+..+|.++.+..+...  ...-.|.+   +++.+|...|+|.+-|.++.+.++++.+|++.++
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS  221 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS  221 (1118)
T ss_pred             cceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence            445555555677777888776544432  22233444   7899999999999999999999999999998865

>PRK04043 tolB translocation protein TolB; Provisional

Probab=92.75  E-value=2.4  Score=29.78  Aligned_cols=33  Identities=12%  Similarity=-0.005  Sum_probs=23.8

Q ss_pred             EEEccCCCEEEEEeCC---------CcEEEEeCCCCeEeeEec
Q psy12376         10 LQTSQVGQVLAIGTAR---------GNLTVYNHMTSKRVPVLG   43 (89)
Q Consensus        10 ~~~spdg~~la~g~~~---------g~v~iwd~~~~~~~~~~~   43 (89)
                      ..|||||++||.....         ..|.+.|..+++. +.+.
T Consensus       324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT  365 (419)
T PRK04043        324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLT  365 (419)
T ss_pred             ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECC
Confidence            4899999988877654         2688888877754 3443

>KOG3621|consensus

Probab=92.67  E-value=0.31  Score=36.33  Aligned_cols=65  Identities=26%  Similarity=0.339  Sum_probs=44.2

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEec---CCcceeec------cEEEEEeCCCCEEEEeCCC
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLG---KHTNTIVG------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~---~h~~~i~~------~~las~s~d~~v~iwd~~~   70 (89)
                      ..+..-+++..+++++.|+..|.+++|+...|+. +.+.   ++...+.+      .++|.|+..|-|.++-+..
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~  107 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK  107 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence            3455566778889999999999999999877653 3222   22222111      6777778888888877753

>PF01011 PQQ: PQQ enzyme repeat family

Probab=92.65  E-value=0.41  Score=21.95  Aligned_cols=25  Identities=24%  Similarity=0.260  Sum_probs=18.7

Q ss_pred             EEEEeCCCcEEEEeCCCCeEeeEec
Q psy12376         19 LAIGTARGNLTVYNHMTSKRVPVLG   43 (89)
Q Consensus        19 la~g~~~g~v~iwd~~~~~~~~~~~   43 (89)
                      +.+++.+|.+.-.|.++|+.+..++
T Consensus         3 v~~~~~~g~l~AlD~~TG~~~W~~~   27 (38)
T PF01011_consen    3 VYVGTPDGYLYALDAKTGKVLWKFQ   27 (38)
T ss_dssp             EEEETTTSEEEEEETTTTSEEEEEE
T ss_pred             EEEeCCCCEEEEEECCCCCEEEeee
Confidence            4455778888888888888877664

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=92.65  E-value=2.2  Score=31.04  Aligned_cols=71  Identities=13%  Similarity=0.191  Sum_probs=47.3

Q ss_pred             cCCcEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCeEeeEec-CCcceee-c---cEEEEEeCC---CCEEEEeCCCCE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGT--ARGNLTVYNHMTSKRVPVLG-KHTNTIV-G---QVLAIGTAR---GNLTVYNHMTSK   72 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~--~~g~v~iwd~~~~~~~~~~~-~h~~~i~-~---~~las~s~d---~~v~iwd~~~~~   72 (89)
                      ..++|-..+|+|++..+++.+  ..-.+.++|.+.+ ....+. .-...+. .   +++..++-|   |.+.|||..+..
T Consensus       273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf  351 (561)
T COG5354         273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF  351 (561)
T ss_pred             ccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCce
Confidence            467899999999988776544  5779999999876 333222 2222232 1   677776665   488999987654


Q ss_pred             EE
Q psy12376         73 RV   74 (89)
Q Consensus        73 ~~   74 (89)
                      ..
T Consensus       352 ~~  353 (561)
T COG5354         352 KV  353 (561)
T ss_pred             EE
Confidence            43

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=92.44  E-value=1.7  Score=33.02  Aligned_cols=62  Identities=18%  Similarity=0.252  Sum_probs=44.9

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEeeEecCC--------------------cceeec-cEEEEEeC----------CCCEE
Q psy12376         16 GQVLAIGTARGNLTVYNHMTSKRVPVLGKH--------------------TNTIVG-QVLAIGTA----------RGNLT   64 (89)
Q Consensus        16 g~~la~g~~~g~v~iwd~~~~~~~~~~~~h--------------------~~~i~~-~~las~s~----------d~~v~   64 (89)
                      +..+..++.|+.+.-.|.++|+.+..+...                    ..++.. ..++.|+.          +|.|+
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~  339 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR  339 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence            457888999999999999999988765321                    112222 56666643          68899


Q ss_pred             EEeCCCCEEEeee
Q psy12376         65 VYNHMTSKRVPVL   77 (89)
Q Consensus        65 iwd~~~~~~~~~l   77 (89)
                      -+|.++|+..-..
T Consensus       340 A~Da~TGkl~W~~  352 (764)
T TIGR03074       340 AFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCcEeeEE
Confidence            9999999988654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=92.38  E-value=0.43  Score=32.85  Aligned_cols=63  Identities=13%  Similarity=0.155  Sum_probs=43.0

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeEeeEecCCc------------cee------ec----cEEEEEeCCC
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMT-SKRVPVLGKHT------------NTI------VG----QVLAIGTARG   61 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~-~~~~~~~~~h~------------~~i------~~----~~las~s~d~   61 (89)
                      ..|+.+.|+++|+++++-+. -+|.+||.+. ..++....-|.            ..|      .+    +.+.+||..+
T Consensus       281 sSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~N  359 (460)
T COG5170         281 SSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSN  359 (460)
T ss_pred             hhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccccc
Confidence            35888999999999998764 4999999875 33444443331            222      22    5677777777


Q ss_pred             CEEEEeC
Q psy12376         62 NLTVYNH   68 (89)
Q Consensus        62 ~v~iwd~   68 (89)
                      ...||-.
T Consensus       360 Nfgiyp~  366 (460)
T COG5170         360 NFGIYPT  366 (460)
T ss_pred             ceeeecc
Confidence            7888774

>KOG4460|consensus

Probab=92.31  E-value=1.7  Score=31.98  Aligned_cols=69  Identities=14%  Similarity=0.221  Sum_probs=44.4

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCC---------CeE---eeEec-------C-----------CcceeeccEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMT---------SKR---VPVLG-------K-----------HTNTIVGQVL   54 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~---------~~~---~~~~~-------~-----------h~~~i~~~~l   54 (89)
                      .+|..+..|+.|..+|..+-+|.+.++=.+.         |+.   ++.+.       .           |...|.+..|
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            3578889999999999999999777754221         221   11110       0           2222222677


Q ss_pred             EEEeCCCCEEEEeCCCCEE
Q psy12376         55 AIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus        55 as~s~d~~v~iwd~~~~~~   73 (89)
                      ..-+.|+.++|||+....-
T Consensus       184 ~iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             EEEecCcEEEEEecCCcch
Confidence            7778999999999965443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=92.21  E-value=1.5  Score=31.26  Aligned_cols=61  Identities=30%  Similarity=0.452  Sum_probs=43.6

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEeeEecCCcc-----eeec------cEEEEEe---------CCCCEEEEeCCCCEEEee
Q psy12376         17 QVLAIGTARGNLTVYNHMTSKRVPVLGKHTN-----TIVG------QVLAIGT---------ARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus        17 ~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~-----~i~~------~~las~s---------~d~~v~iwd~~~~~~~~~   76 (89)
                      ..+..++.+|.|+-+|.++|+.+........     .+.+      .+++.++         .++.|+..|..+|+..-.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            5777888899999999999998876653221     1222      4455554         367899999999987765


Q ss_pred             e
Q psy12376         77 L   77 (89)
Q Consensus        77 l   77 (89)
                      .
T Consensus       191 ~  191 (488)
T cd00216         191 F  191 (488)
T ss_pred             e
Confidence            4

The alignment model contains an 8-bladed beta-propeller.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=92.14  E-value=2  Score=27.37  Aligned_cols=70  Identities=10%  Similarity=0.079  Sum_probs=44.5

Q ss_pred             EEEEEEccCCCEEE-EEeCCCcEEEEeCCC-Ce-E-----eeEecCCc---ceee--c--cEEEEEeCCCCEEEEeCCCC
Q psy12376          7 IFLLQTSQVGQVLA-IGTARGNLTVYNHMT-SK-R-----VPVLGKHT---NTIV--G--QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         7 i~~~~~spdg~~la-~g~~~g~v~iwd~~~-~~-~-----~~~~~~h~---~~i~--~--~~las~s~d~~v~iwd~~~~   71 (89)
                      ...++|+||++.|. +-+..+.|..++... +. .     +..+....   ..+.  .  ++.++....+.|.++|.+ |
T Consensus       136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G  214 (246)
T PF08450_consen  136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G  214 (246)
T ss_dssp             EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S
T ss_pred             ccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c
Confidence            56899999998765 667788999999852 22 1     11222221   1121  1  677777788899999987 6


Q ss_pred             EEEeee
Q psy12376         72 KRVPVL   77 (89)
Q Consensus        72 ~~~~~l   77 (89)
                      +.+..+
T Consensus       215 ~~~~~i  220 (246)
T PF08450_consen  215 KLLREI  220 (246)
T ss_dssp             CEEEEE
T ss_pred             cEEEEE
Confidence            655543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=92.11  E-value=1.9  Score=30.80  Aligned_cols=63  Identities=19%  Similarity=0.147  Sum_probs=46.1

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEeeEecCCcc------e-------eec-cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376         16 GQVLAIGTARGNLTVYNHMTSKRVPVLGKHTN------T-------IVG-QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus        16 g~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~------~-------i~~-~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      +..+..++.++.+.-.|..+|+.+..+.....      .       +.. ..+..++.|+.|+.+|.++|+.+-...
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~  137 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFG  137 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence            34566778889999999999988766542211      1       112 577778899999999999998876543

The alignment model contains an 8-bladed beta-propeller.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.09  E-value=0.61  Score=21.27  Aligned_cols=30  Identities=17%  Similarity=0.265  Sum_probs=20.4

Q ss_pred             cCCCEEEEEe-CCCcEEEEeCCCCeEeeEec
Q psy12376         14 QVGQVLAIGT-ARGNLTVYNHMTSKRVPVLG   43 (89)
Q Consensus        14 pdg~~la~g~-~~g~v~iwd~~~~~~~~~~~   43 (89)
                      |++++|.++. .++.|.++|..+++.+..+.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~   31 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP   31 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            5677665544 47788888888777665543

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.85  E-value=0.82  Score=32.85  Aligned_cols=34  Identities=15%  Similarity=0.071  Sum_probs=27.0

Q ss_pred             EEEEEEcc----CCCEEEEEeCCCcEEEEeCCCCeEee
Q psy12376          7 IFLLQTSQ----VGQVLAIGTARGNLTVYNHMTSKRVP   40 (89)
Q Consensus         7 i~~~~~sp----dg~~la~g~~~g~v~iwd~~~~~~~~   40 (89)
                      ...++.++    +..+|++-+.|+++++||..+++++.
T Consensus       217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~  254 (547)
T PF11715_consen  217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLA  254 (547)
T ss_dssp             EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEE
T ss_pred             cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence            55666766    66799999999999999999998844

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2079|consensus

Probab=91.55  E-value=0.27  Score=38.34  Aligned_cols=63  Identities=21%  Similarity=0.336  Sum_probs=46.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEeeEecC--Ccceeec-------cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376         15 VGQVLAIGTARGNLTVYNHMTSKRVPVLGK--HTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus        15 dg~~la~g~~~g~v~iwd~~~~~~~~~~~~--h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      .+-.+|+|+..|.+...|..+. ..+..++  -++++.+       .+++.|-.+|.|.+||+..++..+.+-
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~  169 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT  169 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence            4457899999999999998753 2111121  2345555       788899999999999999888777664

>PF01011 PQQ: PQQ enzyme repeat family

Probab=91.42  E-value=0.48  Score=21.73  Aligned_cols=27  Identities=22%  Similarity=0.218  Sum_probs=21.9

Q ss_pred             EEEEEeCCCCEEEEeCCCCEEEeeeCC
Q psy12376         53 VLAIGTARGNLTVYNHMTSKRVPVLGK   79 (89)
Q Consensus        53 ~las~s~d~~v~iwd~~~~~~~~~l~~   79 (89)
                      .+..++.||.|+-.|.++|+..-...-
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            456669999999999999998876543

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=90.88  E-value=2  Score=24.91  Aligned_cols=59  Identities=19%  Similarity=0.217  Sum_probs=37.9

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----------cEEEEEeCCCCEEE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----------QVLAIGTARGNLTV   65 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----------~~las~s~d~~v~i   65 (89)
                      -.+.++++.-... ..|+.+..+|+|-+|+... +.-+.-..|+  +.+           .-|++|-.+|.|.+
T Consensus        41 e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~-RlWRiKSK~~--~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   41 ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ-RLWRIKSKNQ--VTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc-eeeeeccCCC--eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            3456777777766 5789999999999998643 2222222232  222           46888888877643

>KOG1645|consensus

Probab=90.86  E-value=0.53  Score=33.18  Aligned_cols=32  Identities=19%  Similarity=0.166  Sum_probs=27.6

Q ss_pred             CcEEEEEEccCC-CEEEEEeCCCcEEEEeCCCC
Q psy12376          5 YYIFLLQTSQVG-QVLAIGTARGNLTVYNHMTS   36 (89)
Q Consensus         5 ~~i~~~~~spdg-~~la~g~~~g~v~iwd~~~~   36 (89)
                      ..+++++|.-|. .+|.+|..+|.|++||++.-
T Consensus       236 ~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  236 NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence            468999999865 58899999999999999863

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=90.71  E-value=2.5  Score=28.44  Aligned_cols=62  Identities=16%  Similarity=0.232  Sum_probs=47.3

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCC-cc------eeec-----cEEEEEeCCCCEEEEeC
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKH-TN------TIVG-----QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h-~~------~i~~-----~~las~s~d~~v~iwd~   68 (89)
                      +.++...++|.+|++.=.-..|.+.|.++|+.+..+.+. .+      ...+     .++-.+..++.|.|+|=
T Consensus       146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN  219 (299)
T PF14269_consen  146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN  219 (299)
T ss_pred             eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence            778888999999999888889999999999999888654 11      1111     45555567788888876

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=90.41  E-value=3.3  Score=30.04  Aligned_cols=61  Identities=25%  Similarity=0.188  Sum_probs=42.8

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEeeEecC--Cc-------ceeec-cEEEEEe------CCCCEEEEeCCCCEEEeee
Q psy12376         17 QVLAIGTARGNLTVYNHMTSKRVPVLGK--HT-------NTIVG-QVLAIGT------ARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        17 ~~la~g~~~g~v~iwd~~~~~~~~~~~~--h~-------~~i~~-~~las~s------~d~~v~iwd~~~~~~~~~l   77 (89)
                      ..+..++.++.+.-.|.++|+.+.....  +.       .++.. ..++.+.      .++.|..+|.++|+.+-..
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence            4677788899999999999998776542  11       12222 4444443      2689999999999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.25  E-value=4.1  Score=27.77  Aligned_cols=68  Identities=12%  Similarity=0.026  Sum_probs=49.6

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEec--CCcc--eeec----cEEEEEeCCCCEEEEeCCCC
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLG--KHTN--TIVG----QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~--~h~~--~i~~----~~las~s~d~~v~iwd~~~~   71 (89)
                      ...+++++|+|+.+.|.+-.+.+.-.|+=...|+.++.+.  +-.+  .|.-    .+.++-..++.+++..+..+
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            4458999999999999988888888888777898887754  2111  2222    56666677888888877543

>KOG0882|consensus

Probab=90.20  E-value=0.66  Score=33.24  Aligned_cols=75  Identities=11%  Similarity=-0.002  Sum_probs=54.7

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCC------CeEeeEec---------CCcceeec-------cEEEEEeCC
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMT------SKRVPVLG---------KHTNTIVG-------QVLAIGTAR   60 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~------~~~~~~~~---------~h~~~i~~-------~~las~s~d   60 (89)
                      |..+|.++.+.|.+..+++....|.|.-|....      ++....+.         ..+....+       ..+++-+.|
T Consensus       143 H~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D  222 (558)
T KOG0882|consen  143 HFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD  222 (558)
T ss_pred             ccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcc
Confidence            456799999999999999999999999999863      11111111         11111111       788888999


Q ss_pred             CCEEEEeCCCCEEEeee
Q psy12376         61 GNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        61 ~~v~iwd~~~~~~~~~l   77 (89)
                      ..|++++.++++.++.+
T Consensus       223 rkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  223 RKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             cEEEEEEeccchhhhhh
Confidence            99999999999887765

>KOG2041|consensus

Probab=90.13  E-value=1  Score=34.31  Aligned_cols=68  Identities=12%  Similarity=0.114  Sum_probs=47.5

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecC--Ccceeec-------cEEEEEeCCCCEEEEeCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGK--HTNTIVG-------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~--h~~~i~~-------~~las~s~d~~v~iwd~~   69 (89)
                      +|...|.-+.|.-..+.|-++..+|.|.+|-+..|..+..+..  .++.|.+       ..++..-.||.|.+=.++
T Consensus        69 GH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd  145 (1189)
T KOG2041|consen   69 GHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD  145 (1189)
T ss_pred             cCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec
Confidence            5778899999999999999999999999999887754332221  1223332       566666667666554443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=89.95  E-value=1.8  Score=29.88  Aligned_cols=52  Identities=31%  Similarity=0.438  Sum_probs=32.4

Q ss_pred             cEEEEeCCCCeEeeEec-CCcc-ee--ec---cEEE-EEeCCCCEEEEeCCCCEEEeeeC
Q psy12376         27 NLTVYNHMTSKRVPVLG-KHTN-TI--VG---QVLA-IGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus        27 ~v~iwd~~~~~~~~~~~-~h~~-~i--~~---~~la-s~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      +|-++|..+++.++.+. .+.. .|  ..   .+|. ....++.+.+||..+|+.+..+.
T Consensus       270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            46666778888877665 2221 12  11   4554 44568999999999999988775

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=89.88  E-value=4.2  Score=27.02  Aligned_cols=27  Identities=19%  Similarity=0.308  Sum_probs=22.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEeeEec
Q psy12376         17 QVLAIGTARGNLTVYNHMTSKRVPVLG   43 (89)
Q Consensus        17 ~~la~g~~~g~v~iwd~~~~~~~~~~~   43 (89)
                      ..|+.|+.+|.|+|.|......+.+++
T Consensus       196 scLViGTE~~~i~iLd~~af~il~~~~  222 (257)
T PF14779_consen  196 SCLVIGTESGEIYILDPQAFTILKQVQ  222 (257)
T ss_pred             ceEEEEecCCeEEEECchhheeEEEEe
Confidence            489999999999999998766655543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=89.78  E-value=1.7  Score=33.26  Aligned_cols=51  Identities=18%  Similarity=0.326  Sum_probs=34.9

Q ss_pred             EEEEEeCCCcEEEEeCCC-C-eEeeEecCC----cceeec------cEEEEEeCCCCEEEEeCC
Q psy12376         18 VLAIGTARGNLTVYNHMT-S-KRVPVLGKH----TNTIVG------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus        18 ~la~g~~~g~v~iwd~~~-~-~~~~~~~~h----~~~i~~------~~las~s~d~~v~iwd~~   69 (89)
                      .-..|-.+..+..||+|- + +.+. -+.|    +....|      .+||.||.+|.|++||-.
T Consensus       544 ~tflGls~n~lfriDpR~~~~k~v~-~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~  606 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSGNKLVD-SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL  606 (794)
T ss_pred             ceEEEECCCceEEeccCCCCCceee-ccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc
Confidence            446677788999999985 3 2221 1122    223333      899999999999999953

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=89.61  E-value=4.3  Score=26.71  Aligned_cols=65  Identities=9%  Similarity=0.010  Sum_probs=41.3

Q ss_pred             CCcEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEeeEec--CCcc--eeec----cEEEEEeCCCCEEEEeCC
Q psy12376          4 RYYIFLLQTSQVGQ-VLAIGTARGNLTVYNHMTSKRVPVLG--KHTN--TIVG----QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         4 ~~~i~~~~~spdg~-~la~g~~~g~v~iwd~~~~~~~~~~~--~h~~--~i~~----~~las~s~d~~v~iwd~~   69 (89)
                      .+.++.++|.|+.. .+|+....+.|.-++. +|+.++.+.  +..+  .|.-    .++++-..++.+.+.++.
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            45699999999755 6677777888888886 577777653  3222  2322    455555568889988883

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2247|consensus

Probab=89.51  E-value=0.13  Score=37.04  Aligned_cols=60  Identities=33%  Similarity=0.483  Sum_probs=49.5

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec------cEEEEEeCCCCEEEEeC
Q psy12376          9 LLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         9 ~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~------~~las~s~d~~v~iwd~   68 (89)
                      .+.|++.+..++.|...|.+.|++..+.+.+.....|..++.+      .+.+.++.|..+.+-..
T Consensus       122 ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~~q  187 (615)
T KOG2247|consen  122 LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVTTQ  187 (615)
T ss_pred             HHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHhhh
Confidence            4789999999999999999999999888877777778887766      78888888876655443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=89.37  E-value=5.1  Score=27.19  Aligned_cols=69  Identities=14%  Similarity=0.104  Sum_probs=38.7

Q ss_pred             EEEEEccCCCEEEEE-eCCCcEEEEeCCC--CeE----eeE-ec---CCcce--eec--cEEEEEeCCC-CEEEEeCCCC
Q psy12376          8 FLLQTSQVGQVLAIG-TARGNLTVYNHMT--SKR----VPV-LG---KHTNT--IVG--QVLAIGTARG-NLTVYNHMTS   71 (89)
Q Consensus         8 ~~~~~spdg~~la~g-~~~g~v~iwd~~~--~~~----~~~-~~---~h~~~--i~~--~~las~s~d~-~v~iwd~~~~   71 (89)
                      ..|+||||++.|... +..+.|..|+...  +..    ... +.   +.-+.  +-+  ++-+++-.+| .|.+|+.+ +
T Consensus       166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G  244 (307)
T COG3386         166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G  244 (307)
T ss_pred             CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C
Confidence            479999999766544 4457888887642  211    111 11   11111  112  5554554544 89999997 6


Q ss_pred             EEEeee
Q psy12376         72 KRVPVL   77 (89)
Q Consensus        72 ~~~~~l   77 (89)
                      +++...
T Consensus       245 ~l~~~i  250 (307)
T COG3386         245 KLLGEI  250 (307)
T ss_pred             cEEEEE
Confidence            655543

>KOG4649|consensus

Probab=89.18  E-value=5.2  Score=27.11  Aligned_cols=63  Identities=13%  Similarity=0.101  Sum_probs=47.2

Q ss_pred             cCC-CEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec------cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         14 QVG-QVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG------QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        14 pdg-~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~------~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      +|. .++++|+-.+.+.--|.++|+.+.+-. -..+|.+      ++++.|-..+.+++-++.+|.+...+
T Consensus        20 ~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f   89 (354)
T KOG4649|consen   20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNF   89 (354)
T ss_pred             cCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeee
Confidence            443 477899999999999999998755321 1234444      89999999999999999998665543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=89.10  E-value=1.9  Score=29.66  Aligned_cols=34  Identities=29%  Similarity=0.363  Sum_probs=26.6

Q ss_pred             EEEEEEccCCCEEEEE-eCCC----cEEEEeCCCCeEee
Q psy12376          7 IFLLQTSQVGQVLAIG-TARG----NLTVYNHMTSKRVP   40 (89)
Q Consensus         7 i~~~~~spdg~~la~g-~~~g----~v~iwd~~~~~~~~   40 (89)
                      +....+||||+++|.+ +..|    .++++|+.+|+.+.
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~  164 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP  164 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC
Confidence            3467999999999876 3344    59999999998754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=89.02  E-value=0.72  Score=31.76  Aligned_cols=40  Identities=28%  Similarity=0.316  Sum_probs=28.2

Q ss_pred             CcEEEEEEccCCC-EEE-EEeCCCcEEEEeCCCCeEeeEecC
Q psy12376          5 YYIFLLQTSQVGQ-VLA-IGTARGNLTVYNHMTSKRVPVLGK   44 (89)
Q Consensus         5 ~~i~~~~~spdg~-~la-~g~~~g~v~iwd~~~~~~~~~~~~   44 (89)
                      .++.+++.+.|.+ .|. +...++.+.+||..+|+.++.+..
T Consensus       289 ~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  289 HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            4567899999876 553 345688999999999999887753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2114|consensus

Probab=88.55  E-value=5.2  Score=30.95  Aligned_cols=76  Identities=11%  Similarity=0.067  Sum_probs=48.6

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE--eeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR--VPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~--~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      .++|+.+++--|++-++-......|.+|.+. |+.  ...+..|...+.|       ..|++| .+..|.+|+....+.-
T Consensus       171 ~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~~e~l~fY~sd~~~~c  248 (933)
T KOG2114|consen  171 KEPITGLALRSDGKSVLFVATTEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQFICA-GSEFLYFYDSDGRGPC  248 (933)
T ss_pred             CCCceeeEEecCCceeEEEEecceeEEEEec-CCCcceeeeccCCccceeeecCCCCccEEEe-cCceEEEEcCCCccee
Confidence            4689999999999862222334578999887 444  3345567777877       325554 4456999998654433


Q ss_pred             eeeC-CCC
Q psy12376         75 PVLG-KHT   81 (89)
Q Consensus        75 ~~l~-~h~   81 (89)
                      ..+. +|.
T Consensus       249 faf~~g~k  256 (933)
T KOG2114|consen  249 FAFEVGEK  256 (933)
T ss_pred             eeecCCCe
Confidence            3444 443

>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein

Probab=88.48  E-value=3.8  Score=24.62  Aligned_cols=60  Identities=13%  Similarity=0.130  Sum_probs=47.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEeeEecC-Ccceeec------------------cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         18 VLAIGTARGNLTVYNHMTSKRVPVLGK-HTNTIVG------------------QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        18 ~la~g~~~g~v~iwd~~~~~~~~~~~~-h~~~i~~------------------~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      ..+.+..||.+.+++..+|+.+..+.. ..+.|+.                  .+-..--+||.+.+-|..++..+...
T Consensus        43 l~f~d~~~G~v~V~~~~~G~~va~~~~g~~GFvrgvlR~l~R~R~~~gv~~~~Pf~L~r~~dGrltL~Dp~Tg~~i~L~  121 (135)
T TIGR03054        43 LVFEDRPDGAVAVVETPDGRLVAILEPGQNGFVRVMLRGLARARARAGVAAEPPFRLTRYDNGRLTLTDPATGWSIELN  121 (135)
T ss_pred             EEEecCCCCeEEEEECCCCCEEEEecCCCCchhhHhHHHHHHHHHHcCCCCCCCEEEEEEeCCcEEEEcCCCCcEEEEe
Confidence            445667899999999999999988854 4444442                  68888899999999999999887643

In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=88.44  E-value=1.2  Score=18.97  Aligned_cols=25  Identities=8%  Similarity=0.183  Sum_probs=16.6

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEE
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVY   31 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iw   31 (89)
                      ...++.+++|+.+++-+.+..|.+|
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEEC
Confidence            4567777777777776666666553

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG4499|consensus

Probab=88.24  E-value=4.6  Score=26.95  Aligned_cols=77  Identities=14%  Similarity=0.025  Sum_probs=48.7

Q ss_pred             EEEEEccCCCE-EEEEeCCCcEEEEe--CCCCeE-----eeEec---CCcc------eeec--cEEEEEeCCCCEEEEeC
Q psy12376          8 FLLQTSQVGQV-LAIGTARGNLTVYN--HMTSKR-----VPVLG---KHTN------TIVG--QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         8 ~~~~~spdg~~-la~g~~~g~v~iwd--~~~~~~-----~~~~~---~h~~------~i~~--~~las~s~d~~v~iwd~   68 (89)
                      ..++|+.|.+. ..+-+.+-+|.-||  ..+|..     +..+.   ....      .|..  ++.+++-.-++|.-.|.
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            36799988764 45666677887888  445532     22222   1111      2222  77888888899999999


Q ss_pred             CCCEEEeeeCCCCCCC
Q psy12376         69 MTSKRVPVLGKHTKSK   84 (89)
Q Consensus        69 ~~~~~~~~l~~h~~~~   84 (89)
                      .+|+.+..+.--+.++
T Consensus       241 ~tGK~L~eiklPt~qi  256 (310)
T KOG4499|consen  241 TTGKILLEIKLPTPQI  256 (310)
T ss_pred             CCCcEEEEEEcCCCce
Confidence            9998887654334333

>KOG2103|consensus

Probab=87.74  E-value=7.9  Score=29.90  Aligned_cols=77  Identities=13%  Similarity=0.030  Sum_probs=52.7

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeE-ecCCcceeec-cEEEEEe-CCCCEEEEeCCCCEEEeeeCCCCC
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPV-LGKHTNTIVG-QVLAIGT-ARGNLTVYNHMTSKRVPVLGKHTK   82 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~-~~~h~~~i~~-~~las~s-~d~~v~iwd~~~~~~~~~l~~h~~   82 (89)
                      .+..+.+++-.+.|...+..|.+.-.+.++|+.+.. .-+.+..... .+.-+-| +...+++||...|.....+.-|.+
T Consensus        37 k~~~~~~~t~~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~~~~~~~~~~iS~dg~~lr~wn~~~g~l~~~i~l~~g  116 (910)
T KOG2103|consen   37 KVNFLVYDTKSKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTSGLGVPLTNTISVDGRYLRSWNTNNGILDWEIELADG  116 (910)
T ss_pred             eEEEEeecCCCceEEEEeccchhheecccCCcEEEEEeccCCCcccCcceeEEEccCCcEEEeecCCCceeeeecccccc
Confidence            578899999999999999999999999999987643 2121111112 2222233 344799999998877766654443

>PHA02713 hypothetical protein; Provisional

Probab=87.51  E-value=1.4  Score=32.11  Aligned_cols=69  Identities=10%  Similarity=0.131  Sum_probs=43.5

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCC-CeE--eeEecC----Ccceeec-cEEEEEeCCC--CEEEEeCCCCEEEeeeC
Q psy12376         15 VGQVLAIGTAR------GNLTVYNHMT-SKR--VPVLGK----HTNTIVG-QVLAIGTARG--NLTVYNHMTSKRVPVLG   78 (89)
Q Consensus        15 dg~~la~g~~~------g~v~iwd~~~-~~~--~~~~~~----h~~~i~~-~~las~s~d~--~v~iwd~~~~~~~~~l~   78 (89)
                      +|+..+.|+.+      ..+..||..+ .+-  +..+..    +...+.. ++.+.|+.|+  ++..||+.+++....-.
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~  542 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICH  542 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCcccccccchhh
Confidence            45656666543      2467888876 332  222221    1111111 7899999898  89999999988877777


Q ss_pred             CCCCC
Q psy12376         79 KHTKS   83 (89)
Q Consensus        79 ~h~~~   83 (89)
                      .|+++
T Consensus       543 ~~~~~  547 (557)
T PHA02713        543 QHSNS  547 (557)
T ss_pred             hcCCc
Confidence            77765

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.25  E-value=5.4  Score=28.48  Aligned_cols=28  Identities=14%  Similarity=0.336  Sum_probs=20.9

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMT   35 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~   35 (89)
                      ...+.++|+|+++++ +.+|...|+....
T Consensus        35 p~~ls~npngr~v~V-~g~geY~iyt~~~   62 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLV-CGDGEYEIYTALA   62 (443)
T ss_dssp             -SEEEE-TTSSEEEE-EETTEEEEEETTT
T ss_pred             CeeEEECCCCCEEEE-EcCCEEEEEEccC
Confidence            578899999998888 6688888887544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2395|consensus

Probab=86.90  E-value=2.3  Score=31.20  Aligned_cols=60  Identities=17%  Similarity=0.356  Sum_probs=38.4

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE-eeEecCCcceeec------cEEEEEeCCCCEEEEeC
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR-VPVLGKHTNTIVG------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~-~~~~~~h~~~i~~------~~las~s~d~~v~iwd~   68 (89)
                      ..|.+-.-+| ++|+|+.+|.|++||. .++. ...+++-..+|.-      ...+.|..+..+.+-++
T Consensus       433 Fsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t  499 (644)
T KOG2395|consen  433 FSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT  499 (644)
T ss_pred             cceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence            5566666666 8899999999999997 4443 2345554455433      33333456666666665

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=86.72  E-value=8.5  Score=26.71  Aligned_cols=38  Identities=8%  Similarity=-0.043  Sum_probs=28.9

Q ss_pred             cEEEEEEccCCCEEEEEeC-CCcEEEEeCCCC-eEeeEec
Q psy12376          6 YIFLLQTSQVGQVLAIGTA-RGNLTVYNHMTS-KRVPVLG   43 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~-~g~v~iwd~~~~-~~~~~~~   43 (89)
                      ....|.|+|+|++..+.+. +++|.+|..... ..+..++
T Consensus       192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ  231 (346)
T COG2706         192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ  231 (346)
T ss_pred             CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence            3578999999998877777 889999998762 3344444

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=86.66  E-value=4.1  Score=26.29  Aligned_cols=54  Identities=31%  Similarity=0.443  Sum_probs=32.9

Q ss_pred             cCCCEEEEEeCCCcEEEEeCCC-CeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCC
Q psy12376         14 QVGQVLAIGTARGNLTVYNHMT-SKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus        14 pdg~~la~g~~~g~v~iwd~~~-~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~   71 (89)
                      ..++.|+.|+.+| +.+++... .+.......  ..|.-       +.++.- .|+.++++++..-
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~--~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l   66 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL--SSITQLSVLPELNLLLVL-SDGQLYVYDLDSL   66 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeec--ceEEEEEEecccCEEEEE-cCCccEEEEchhh
Confidence            3578999999998 89999832 222222211  11222       444444 3599999998653

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=86.58  E-value=1.8  Score=19.81  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=14.8

Q ss_pred             CCCEEEEEeCCCcEEEEeCCC
Q psy12376         15 VGQVLAIGTARGNLTVYNHMT   35 (89)
Q Consensus        15 dg~~la~g~~~g~v~iwd~~~   35 (89)
                      .+..+..++.+|.++.+|+++
T Consensus        20 ~~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen   20 AGGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             CTSEEEEE-TTSEEEEEETT-
T ss_pred             ECCEEEEEcCCCEEEEEeCCC
Confidence            455788888888888888753

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.46  E-value=1.8  Score=26.60  Aligned_cols=30  Identities=27%  Similarity=0.316  Sum_probs=25.4

Q ss_pred             cEEEEEEccCC------CEEEEEeCCCcEEEEeCCC
Q psy12376          6 YIFLLQTSQVG------QVLAIGTARGNLTVYNHMT   35 (89)
Q Consensus         6 ~i~~~~~spdg------~~la~g~~~g~v~iwd~~~   35 (89)
                      .+..++|||.|      ..||+-+.+|.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            58899999965      4788999999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=86.04  E-value=5.6  Score=28.23  Aligned_cols=65  Identities=17%  Similarity=0.271  Sum_probs=41.0

Q ss_pred             EEEEccCCCEEEEEeCCCcEEE---EeCC-----CCeEeeEecC---Cc--ceeec------------------cEEEEE
Q psy12376          9 LLQTSQVGQVLAIGTARGNLTV---YNHM-----TSKRVPVLGK---HT--NTIVG------------------QVLAIG   57 (89)
Q Consensus         9 ~~~~spdg~~la~g~~~g~v~i---wd~~-----~~~~~~~~~~---h~--~~i~~------------------~~las~   57 (89)
                      .++.+|+|+.||.+..+.-+.+   |+..     .+.....+.+   +.  ..|++                  ..++.|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            5788999999999987776665   5331     1112111111   11  23333                  579999


Q ss_pred             eCCCCEEEEeCCCCEEE
Q psy12376         58 TARGNLTVYNHMTSKRV   74 (89)
Q Consensus        58 s~d~~v~iwd~~~~~~~   74 (89)
                      ..+|.|++|... |..+
T Consensus        86 ~ssG~vrfyte~-G~LL  101 (415)
T PF14655_consen   86 TSSGYVRFYTEN-GVLL  101 (415)
T ss_pred             ecccEEEEEecc-chHH
Confidence            999999999973 4443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=85.86  E-value=12  Score=28.71  Aligned_cols=62  Identities=15%  Similarity=0.120  Sum_probs=46.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEeeEecCCcc------------------------------eeec-cEEEEEeCCCCEE
Q psy12376         16 GQVLAIGTARGNLTVYNHMTSKRVPVLGKHTN------------------------------TIVG-QVLAIGTARGNLT   64 (89)
Q Consensus        16 g~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~------------------------------~i~~-~~las~s~d~~v~   64 (89)
                      +..+..++.++.|.-.|.++|+.+..+.....                              +..| ..++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            55777778889999999999998776643211                              0112 4788888999999


Q ss_pred             EEeCCCCEEEeee
Q psy12376         65 VYNHMTSKRVPVL   77 (89)
Q Consensus        65 iwd~~~~~~~~~l   77 (89)
                      -.|.++|+....+
T Consensus       274 ALDA~TGk~~W~f  286 (764)
T TIGR03074       274 ALDADTGKLCEDF  286 (764)
T ss_pred             EEECCCCCEEEEe
Confidence            9999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=85.73  E-value=5.8  Score=23.88  Aligned_cols=63  Identities=21%  Similarity=0.277  Sum_probs=38.9

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCCe--------EeeEecCCcceeec------------cEEEEEeCCCCEEEEeC
Q psy12376          9 LLQTSQVGQVLAIGTARGNLTVYNHMTSK--------RVPVLGKHTNTIVG------------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         9 ~~~~spdg~~la~g~~~g~v~iwd~~~~~--------~~~~~~~h~~~i~~------------~~las~s~d~~v~iwd~   68 (89)
                      .-.|......|++++..|+|.|++.....        .++.+. -+..|.|            ..|..| ...++..||+
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliG-t~t~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDV   80 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEc
Confidence            34566666799999999999999875422        112221 1122222            456665 4556999999


Q ss_pred             CCCEE
Q psy12376         69 MTSKR   73 (89)
Q Consensus        69 ~~~~~   73 (89)
                      ..+.-
T Consensus        81 ~~N~d   85 (136)
T PF14781_consen   81 ENNSD   85 (136)
T ss_pred             ccCch
Confidence            76543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=85.42  E-value=1.5  Score=28.16  Aligned_cols=24  Identities=33%  Similarity=0.250  Sum_probs=20.7

Q ss_pred             cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376         52 QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus        52 ~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      +++.+-+.+|.+++||+..++...
T Consensus        23 ~~Ll~iT~~G~l~vWnl~~~k~~~   46 (219)
T PF07569_consen   23 SYLLAITSSGLLYVWNLKKGKAVL   46 (219)
T ss_pred             CEEEEEeCCCeEEEEECCCCeecc
Confidence            788889999999999998876643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=85.07  E-value=7.7  Score=24.70  Aligned_cols=69  Identities=12%  Similarity=-0.016  Sum_probs=43.5

Q ss_pred             EEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEee-EecCCcc-eee-c-cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376          8 FLLQTSQ-VGQVLAIGTARGNLTVYNHMTSKRVP-VLGKHTN-TIV-G-QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus         8 ~~~~~sp-dg~~la~g~~~g~v~iwd~~~~~~~~-~~~~h~~-~i~-~-~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      .+..|.+ +|.++.+....+.|+.|+..+++... .+....+ .+. . ..|..+..+ .+.++|..+++.....
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEe
Confidence            4688998 77777887789999999998876532 2222111 122 1 445555444 4666699888665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4499|consensus

Probab=84.92  E-value=7.5  Score=26.00  Aligned_cols=42  Identities=14%  Similarity=0.137  Sum_probs=32.1

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec
Q psy12376         10 LQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG   51 (89)
Q Consensus        10 ~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~   51 (89)
                      ++...+|+..++....|+|...|..+|+.+.++.-....|.|
T Consensus       217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qits  258 (310)
T KOG4499|consen  217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITS  258 (310)
T ss_pred             ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence            344567888888888899999999999988776544555554

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=84.88  E-value=3.7  Score=27.89  Aligned_cols=62  Identities=16%  Similarity=0.239  Sum_probs=38.0

Q ss_pred             ccCCCEEEEE---------eCCCcEEEEeCCCCeEeeEecC---Ccceeec---cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376         13 SQVGQVLAIG---------TARGNLTVYNHMTSKRVPVLGK---HTNTIVG---QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus        13 spdg~~la~g---------~~~g~v~iwd~~~~~~~~~~~~---h~~~i~~---~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      |||+++++..         +..+.+.++|+.+++.......   -..+..+   +.+|.. .++.|++++..++...+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~   77 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQ   77 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEE-ecCceEEEECCCCCeEE
Confidence            6888888773         2346899999998765433222   1112222   666665 46789999987775443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=84.66  E-value=3.5  Score=29.23  Aligned_cols=62  Identities=18%  Similarity=0.231  Sum_probs=33.5

Q ss_pred             EEEEccCCCEEEE-EeCCC--cEEEEeCCCCeEeeEecCCcceeec---------cEEEEEeCCC--CEEEEeCCCCE
Q psy12376          9 LLQTSQVGQVLAI-GTARG--NLTVYNHMTSKRVPVLGKHTNTIVG---------QVLAIGTARG--NLTVYNHMTSK   72 (89)
Q Consensus         9 ~~~~spdg~~la~-g~~~g--~v~iwd~~~~~~~~~~~~h~~~i~~---------~~las~s~d~--~v~iwd~~~~~   72 (89)
                      .-+|||||+.||- ...||  .|+++|..++. .+.+.. ...+.+         .++++.+..|  .|.++|.+.+.
T Consensus       242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~  317 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ  317 (425)
T ss_pred             CccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceeccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence            4589999997764 44466  55556665544 343432 111111         4455555555  45555665443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=84.06  E-value=9  Score=24.70  Aligned_cols=28  Identities=14%  Similarity=0.051  Sum_probs=21.4

Q ss_pred             cEEEEEeCCCCEEEEeCCCCEEEeeeCCC
Q psy12376         52 QVLAIGTARGNLTVYNHMTSKRVPVLGKH   80 (89)
Q Consensus        52 ~~las~s~d~~v~iwd~~~~~~~~~l~~h   80 (89)
                      .||+..+.+ .|.||++.+++.++.+...
T Consensus       239 pyli~~~~~-~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  239 PYLIAFSSN-SIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             CEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence            677776654 4999999999888877643

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=83.73  E-value=11  Score=25.51  Aligned_cols=69  Identities=13%  Similarity=0.117  Sum_probs=42.9

Q ss_pred             EEEEEEccCCCEEEEEeC----CCcEEEEeCCC--CeE--eeEec-CCccee--ec----cEEEEE-eCCCCEEEEeCCC
Q psy12376          7 IFLLQTSQVGQVLAIGTA----RGNLTVYNHMT--SKR--VPVLG-KHTNTI--VG----QVLAIG-TARGNLTVYNHMT   70 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~----~g~v~iwd~~~--~~~--~~~~~-~h~~~i--~~----~~las~-s~d~~v~iwd~~~   70 (89)
                      .+.++++|++++|.+...    +|.|..|++..  ++.  +.... .-..+.  ..    ++|+.+ -.+++|.++++..
T Consensus        39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~  118 (345)
T PF10282_consen   39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD  118 (345)
T ss_dssp             ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence            567899999999988877    56898888764  443  22222 111221  11    455544 5799999999975


Q ss_pred             -CEEEe
Q psy12376         71 -SKRVP   75 (89)
Q Consensus        71 -~~~~~   75 (89)
                       +....
T Consensus       119 ~g~l~~  124 (345)
T PF10282_consen  119 DGSLGE  124 (345)
T ss_dssp             TSEEEE
T ss_pred             Ccccce
Confidence             44433

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=83.62  E-value=6.7  Score=29.82  Aligned_cols=65  Identities=9%  Similarity=0.134  Sum_probs=44.5

Q ss_pred             CCcEEEEEEc--cCCCEEEEEeCCCcEEEEeCCC--CeEee--Ee-cCCcce-e---ec----c---EEEEEeCCCCEEE
Q psy12376          4 RYYIFLLQTS--QVGQVLAIGTARGNLTVYNHMT--SKRVP--VL-GKHTNT-I---VG----Q---VLAIGTARGNLTV   65 (89)
Q Consensus         4 ~~~i~~~~~s--pdg~~la~g~~~g~v~iwd~~~--~~~~~--~~-~~h~~~-i---~~----~---~las~s~d~~v~i   65 (89)
                      ....++++++  ....+||+++....|.||-...  .+...  .. ..|+-+ |   .+    .   .+++++-.|.+.+
T Consensus       163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~  242 (717)
T PF08728_consen  163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT  242 (717)
T ss_pred             CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence            4568999998  7788999999999888887543  22111  11 123222 1   11    2   7899999999999


Q ss_pred             EeC
Q psy12376         66 YNH   68 (89)
Q Consensus        66 wd~   68 (89)
                      |++
T Consensus       243 ~~I  245 (717)
T PF08728_consen  243 FKI  245 (717)
T ss_pred             EEE
Confidence            888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2727|consensus

Probab=83.54  E-value=1.1  Score=34.78  Aligned_cols=71  Identities=18%  Similarity=0.190  Sum_probs=53.9

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcce----ee------------c----cEEEEEeCCCCEEEE
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNT----IV------------G----QVLAIGTARGNLTVY   66 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~----i~------------~----~~las~s~d~~v~iw   66 (89)
                      -..++.||+|.+.|+...=|.|.+.|+..+..++.+.|+.+.    |.            .    -+.+.+=+.|-+.||
T Consensus       324 ge~lslSP~gtlAAVTD~lgRVlLlDta~~ivvr~wKGYRDAsc~fv~vkek~~~s~~~~sRvAlFLvIyAPRrgiLEVW  403 (1244)
T KOG2727|consen  324 GEKLSLSPSGTLAAVTDSLGRVLLLDTAALIVVRLWKGYRDASCVFVEVKEKKGKSEPVKSRVALFLVIYAPRRGILEVW  403 (1244)
T ss_pred             cceeeeCCCccEEEEecccCcEEEEehhhhhHHHHhcccccceeEEEEcccccCCCccCcCceeEEEEEecccccHHHHH
Confidence            467899999999999888899999999887776666665331    21            0    245567788899999


Q ss_pred             eCCCCEEEeee
Q psy12376         67 NHMTSKRVPVL   77 (89)
Q Consensus        67 d~~~~~~~~~l   77 (89)
                      .+.+|.++..+
T Consensus       404 ~~q~gpRV~Af  414 (1244)
T KOG2727|consen  404 QMQTGPRVLAF  414 (1244)
T ss_pred             HhccCCeEEEE
Confidence            99988877654

>KOG2247|consensus

Probab=82.78  E-value=0.13  Score=37.08  Aligned_cols=81  Identities=25%  Similarity=0.437  Sum_probs=55.9

Q ss_pred             CCcEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCeEee-Eec-CCcceeec-----cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          4 RYYIFLLQTSQVGQVL-AIGTARGNLTVYNHMTSKRVP-VLG-KHTNTIVG-----QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         4 ~~~i~~~~~spdg~~l-a~g~~~g~v~iwd~~~~~~~~-~~~-~h~~~i~~-----~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      +.....++|..+|..+ +.+-..+.+.+||+.+...-. .+. .|...+..     ..++.+...+.+.|++-.+.....
T Consensus        74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii  153 (615)
T KOG2247|consen   74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII  153 (615)
T ss_pred             chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhh
Confidence            3445678899988755 455668899999987632111 111 13222222     567778899999999999888888


Q ss_pred             eeCCCCCCC
Q psy12376         76 VLGKHTKSK   84 (89)
Q Consensus        76 ~l~~h~~~~   84 (89)
                      .+++|.++.
T Consensus       154 v~Gkh~RRg  162 (615)
T KOG2247|consen  154 VMGKHQRRG  162 (615)
T ss_pred             hhcccccce
Confidence            899998874

>PRK10115 protease 2; Provisional

Probab=82.09  E-value=19  Score=27.09  Aligned_cols=32  Identities=9%  Similarity=0.012  Sum_probs=24.9

Q ss_pred             EEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCeE
Q psy12376          7 IFLLQTSQVGQVLAIGTARG-----NLTVYNHMTSKR   38 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g-----~v~iwd~~~~~~   38 (89)
                      +..+.|||||++||.+.+.+     .+++.|..+|+.
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~  165 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW  165 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC
Confidence            67789999999998765532     588888888764

>PHA03098 kelch-like protein; Provisional

Probab=81.97  E-value=12  Score=26.74  Aligned_cols=74  Identities=23%  Similarity=0.340  Sum_probs=39.7

Q ss_pred             cCCCEEEEEeCCC--------cEEEEeCCCCeEeeE--ec----CCcceeec-cEEEEEeCC-----CCEEEEeCCCCEE
Q psy12376         14 QVGQVLAIGTARG--------NLTVYNHMTSKRVPV--LG----KHTNTIVG-QVLAIGTAR-----GNLTVYNHMTSKR   73 (89)
Q Consensus        14 pdg~~la~g~~~g--------~v~iwd~~~~~~~~~--~~----~h~~~i~~-~~las~s~d-----~~v~iwd~~~~~~   73 (89)
                      .+++.++.|+.+.        .+.+||..+++-...  +.    .|...+.. ++++.|+.+     +.+.+||..+++.
T Consensus       436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        436 HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence            3556666665432        388888877543211  11    01111111 667777664     5799999987766


Q ss_pred             EeeeCCCCCCCcCCC
Q psy12376         74 VPVLGKHTKSKPSTE   88 (89)
Q Consensus        74 ~~~l~~h~~~~~~~~   88 (89)
                      .. +...++.+.+.|
T Consensus       516 ~~-~~~~p~~~~~~~  529 (534)
T PHA03098        516 TL-FCKFPKVIGSLE  529 (534)
T ss_pred             Ee-cCCCccccccee
Confidence            43 334444444443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=81.41  E-value=3.7  Score=27.93  Aligned_cols=32  Identities=19%  Similarity=0.107  Sum_probs=25.6

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR   38 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~   38 (89)
                      .+....|||+|+.+|... ++.|.+++..+++.
T Consensus        44 ~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen   44 KLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             TBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred             ccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence            467899999999999876 57999999877744

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=81.26  E-value=15  Score=25.12  Aligned_cols=61  Identities=23%  Similarity=0.229  Sum_probs=41.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEeeEecCCc-c-----eeec-cEEEEEeCCCCEEEEeCCCCEEEee
Q psy12376         15 VGQVLAIGTARGNLTVYNHMTSKRVPVLGKHT-N-----TIVG-QVLAIGTARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus        15 dg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~-~-----~i~~-~~las~s~d~~v~iwd~~~~~~~~~   76 (89)
                      +|+ +.+++.+|.++.+|.++|+.+....... .     ++.. ..+..++.|+.+..-|..++...-.
T Consensus       111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~  178 (370)
T COG1520         111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWT  178 (370)
T ss_pred             CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEE
Confidence            665 7788889999999998888877665443 1     1111 3344444788888888887777544

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=80.52  E-value=5.6  Score=21.92  Aligned_cols=27  Identities=15%  Similarity=0.141  Sum_probs=16.1

Q ss_pred             EEEEEccCCCEEEEEe-CCCcEEEEeCC
Q psy12376          8 FLLQTSQVGQVLAIGT-ARGNLTVYNHM   34 (89)
Q Consensus         8 ~~~~~spdg~~la~g~-~~g~v~iwd~~   34 (89)
                      ..+..+|++++|..++ ..+.|.+|+..
T Consensus        57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   57 NGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             ceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            4567777776654443 35567666643

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=80.48  E-value=4.2  Score=30.26  Aligned_cols=35  Identities=11%  Similarity=0.073  Sum_probs=25.9

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCC-CcEEEEeCCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTAR-GNLTVYNHMTS   36 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~-g~v~iwd~~~~   36 (89)
                      +..+-|-|.+|.+||+.|+.+-.+ =.-++||-...
T Consensus       153 ~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  153 KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            345568999999999977665444 38899997543

>KOG3616|consensus

Probab=80.28  E-value=6  Score=30.77  Aligned_cols=62  Identities=13%  Similarity=0.265  Sum_probs=41.3

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCe--EeeEecCCccee-ec-cEEEEEeCCCCEEEEeC
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMTSK--RVPVLGKHTNTI-VG-QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~~~--~~~~~~~h~~~i-~~-~~las~s~d~~v~iwd~   68 (89)
                      +++++-+|-|+-++++..||++++|+-...+  .+.........+ .. .=|+++..|.-+.-|.-
T Consensus        17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~tsdrr~la~~~   82 (1636)
T KOG3616|consen   17 TTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTATSDRRALAWKE   82 (1636)
T ss_pred             eeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccceEEEeccchhheeec
Confidence            6788999999999999999999999953322  233322222211 11 23666777777778874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	89
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.8
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.77
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.77
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.76
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.76
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.75
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.74
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.74
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.74
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.74
2pm7_B	297	Protein transport protein SEC13, protein transport	99.73
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.73
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.73
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.72
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.72
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.72
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.71
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.7
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.7
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.7
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.7
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.69
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.69
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.68
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.68
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.68
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.68
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.68
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.67
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.67
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.67
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.67
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.67
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.66
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.66
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.66
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.65
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.65
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.65
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.65
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.65
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.65
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.64
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.64
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.64
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.64
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.63
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.63
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.63
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.62
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.62
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.62
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.62
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.62
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.61
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.61
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.6
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.59
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.59
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.59
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.59
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.59
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.58
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.58
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.58
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.57
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.57
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.57
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.57
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.57
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.57
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.56
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.56
3jro_A	753	Fusion protein of protein transport protein SEC13	99.56
2pm7_B	297	Protein transport protein SEC13, protein transport	99.56
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.56
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.56
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.55
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.55
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.55
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.55
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.55
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.55
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.54
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.54
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.54
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.54
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.53
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.53
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.52
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.52
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.52
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.52
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.52
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.52
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.51
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.51
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.51
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.51
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.51
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.51
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.51
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.51
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.5
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.5
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.49
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.49
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.49
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.48
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.48
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.48
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.48
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.47
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.46
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.45
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.45
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.45
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.44
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.44
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.43
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.43
3jro_A	753	Fusion protein of protein transport protein SEC13	99.41
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.35
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.31
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.25
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.19
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.18
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.18
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.11
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.97
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.83
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.78
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.77
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.77
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.74
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.74
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.67
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.63
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.62
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.61
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.61
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.6
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.6
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.59
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.57
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.54
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.52
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.51
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.48
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.48
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.46
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.45
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.45
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.42
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.4
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.39
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.34
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.33
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.31
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.3
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.27
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.25
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.2
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.19
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.19
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.17
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.14
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.14
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.13
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.09
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.08
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.08
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.01
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.96
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.95
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.95
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.93
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.9
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.87
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.85
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.83
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.82
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.81
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.78
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.74
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.74
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.65
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.64
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.63
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.6
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.55
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.5
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.5
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.47
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.43
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.4
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.4
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.36
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.3
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.29
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.25
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	97.23
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.22
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.2
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.18
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.17
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.15
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.14
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.13
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.12
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.04
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.01
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	96.97
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.94
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.92
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.88
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	96.88
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	96.77
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	96.75
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.68
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	96.62
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.6
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.59
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.59
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	96.57
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.56
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.55
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.48
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.39
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	96.36
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.34
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.25
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.06
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.04
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	95.92
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.65
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	95.65
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	95.61
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.59
2ece_A	462	462AA long hypothetical selenium-binding protein;	95.46
2qe8_A	343	Uncharacterized protein; structural genomics, join	95.46
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	95.19
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	95.15
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	95.08
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	95.01
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	94.98
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	94.87
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	94.86
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	94.83
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	94.67
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	94.64
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	94.58
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	94.25
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	93.54
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.41
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	93.11
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	91.84
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	91.58
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.06
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.95
2p4o_A	306	Hypothetical protein; putative lactonase, structur	89.75
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	89.64
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	89.4
4a2l_A	795	BT_4663, two-component system sensor histidine kin	89.38
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	89.35
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	88.98
2p4o_A	306	Hypothetical protein; putative lactonase, structur	88.96
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	87.51
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	87.37
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	85.31
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	85.19
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	84.67
2ece_A	462	462AA long hypothetical selenium-binding protein;	84.61
4a2l_A	795	BT_4663, two-component system sensor histidine kin	83.83
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	83.81
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	83.31
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	83.3
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	81.39
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	80.51
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	80.36

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.80  E-value=8.9e-19  Score=113.05  Aligned_cols=85  Identities=14%  Similarity=0.121  Sum_probs=78.1

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|.+.|++++|+|+|++||+++.||.|++||..+++.+..+..|..++.+       ++|++|+.|++|++||+.+++..
T Consensus        11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~   90 (304)
T 2ynn_A           11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV   90 (304)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEE
Confidence            46788999999999999999999999999999999999999999888876       79999999999999999999999


Q ss_pred             eeeCCCCCCCcC
Q psy12376         75 PVLGKHTKSKPS   86 (89)
Q Consensus        75 ~~l~~h~~~~~~   86 (89)
                      ..+.+|+..+.+
T Consensus        91 ~~~~~h~~~v~~  102 (304)
T 2ynn_A           91 VDFEAHPDYIRS  102 (304)
T ss_dssp             EEEECCSSCEEE
T ss_pred             EEEeCCCCcEEE
Confidence            999999887643

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.77  E-value=3.9e-18  Score=114.16  Aligned_cols=85  Identities=15%  Similarity=0.173  Sum_probs=78.6

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|+++|++++|+|++.+||+|+.||.|++||..+++....+.+|...|.+       ++|++|+.|++|+|||+.+++.+
T Consensus       106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~  185 (410)
T 1vyh_C          106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI  185 (410)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE
T ss_pred             ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence            57889999999999999999999999999999999999999999998887       79999999999999999999999


Q ss_pred             eeeCCCCCCCcC
Q psy12376         75 PVLGKHTKSKPS   86 (89)
Q Consensus        75 ~~l~~h~~~~~~   86 (89)
                      ..+.+|...+.+
T Consensus       186 ~~~~~h~~~V~~  197 (410)
T 1vyh_C          186 RTMHGHDHNVSS  197 (410)
T ss_dssp             ECCCCCSSCEEE
T ss_pred             EEEcCCCCCEEE
Confidence            999999877653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.77  E-value=5.1e-18  Score=116.08  Aligned_cols=82  Identities=17%  Similarity=0.262  Sum_probs=74.0

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|.++|++++|||||++||+|+.|+.|+|||. +++.+..+.+|...|.+       ++||+++.|++|+|||. +++.+
T Consensus        14 GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~   91 (577)
T 2ymu_A           14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLL   91 (577)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEE
Confidence            58899999999999999999999999999995 67888999999999987       79999999999999996 56777


Q ss_pred             eeeCCCCCCCc
Q psy12376         75 PVLGKHTKSKP   85 (89)
Q Consensus        75 ~~l~~h~~~~~   85 (89)
                      ..+.+|...+.
T Consensus        92 ~~~~~~~~~v~  102 (577)
T 2ymu_A           92 QTLTGHSSSVR  102 (577)
T ss_dssp             EEECCCSSCEE
T ss_pred             EEEECCCCCEE
Confidence            88889987654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.76  E-value=9.1e-18  Score=110.85  Aligned_cols=77  Identities=9%  Similarity=0.136  Sum_probs=70.5

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      +|.+.|++++|+|||++||+|+.||.|++||+++++.+..+.+|...|.+        .+|++|+.|++|+|||+++++.
T Consensus       125 ~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~  204 (344)
T 4gqb_B          125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP  204 (344)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce
Confidence            57788999999999999999999999999999999999999999998877        5799999999999999998877


Q ss_pred             EeeeC
Q psy12376         74 VPVLG   78 (89)
Q Consensus        74 ~~~l~   78 (89)
                      ...+.
T Consensus       205 ~~~~~  209 (344)
T 4gqb_B          205 ASQIG  209 (344)
T ss_dssp             EEECC
T ss_pred             eeeee
Confidence            66654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.76  E-value=1.3e-17  Score=108.75  Aligned_cols=84  Identities=15%  Similarity=0.158  Sum_probs=77.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|..+|++++|+|++++|++|+.||.|++||.++++....+.+|...|.+       ++|++|+.|++|+|||+++++.+
T Consensus       204 ~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~  283 (321)
T 3ow8_A          204 GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV  283 (321)
T ss_dssp             CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE
Confidence            36678999999999999999999999999999999999999999998876       79999999999999999999999


Q ss_pred             eeeCCCCCCCc
Q psy12376         75 PVLGKHTKSKP   85 (89)
Q Consensus        75 ~~l~~h~~~~~   85 (89)
                      ..+.+|...+.
T Consensus       284 ~~~~~h~~~v~  294 (321)
T 3ow8_A          284 HTFFDHQDQVW  294 (321)
T ss_dssp             EEECCCSSCEE
T ss_pred             EEEcCCCCcEE
Confidence            99999987754

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.75  E-value=1.3e-17  Score=110.47  Aligned_cols=68  Identities=10%  Similarity=0.099  Sum_probs=62.5

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEe-cCCcceeec-------cEEEEEeCCCCEEEEeCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVL-GKHTNTIVG-------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~-~~h~~~i~~-------~~las~s~d~~v~iwd~~   69 (89)
                      +|...|++++|||||++||+|+.|+.|+|||+++++.+..+ .+|..+|.+       ++|||||.|++|+|||+.
T Consensus       267 ~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          267 NRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             SSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             CCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            35667999999999999999999999999999999988875 789999987       899999999999999995

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.74  E-value=1.6e-17  Score=107.79  Aligned_cols=85  Identities=14%  Similarity=0.153  Sum_probs=70.9

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCe--EeeEecCCcceeec---------cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSK--RVPVLGKHTNTIVG---------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~--~~~~~~~h~~~i~~---------~~las~s~d~~v~iwd~~~   70 (89)
                      +|.+.|++++|+|+|++||+|+.|++|++||+++++  .+..+.+|...|.+         ++|++|+.|++|+|||+++
T Consensus        11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~   90 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN   90 (316)
T ss_dssp             ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred             cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence            578899999999999999999999999999998765  45678899998876         5899999999999999987


Q ss_pred             C--EEEeeeCCCCCCCcC
Q psy12376         71 S--KRVPVLGKHTKSKPS   86 (89)
Q Consensus        71 ~--~~~~~l~~h~~~~~~   86 (89)
                      +  .....+.+|...+.+
T Consensus        91 ~~~~~~~~~~~h~~~V~~  108 (316)
T 3bg1_A           91 GTWEKSHEHAGHDSSVNS  108 (316)
T ss_dssp             SCCCEEEEECCCSSCCCE
T ss_pred             CcceEEEEccCCCCceEE
Confidence            6  355677888877653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.74  E-value=5e-17  Score=105.95  Aligned_cols=83  Identities=22%  Similarity=0.313  Sum_probs=75.7

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      +...+.+++|+|+|++||+|+.||.|++||+++++.+..+.+|..+|.+       ++|++|+.|++|+|||++++....
T Consensus       163 ~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~  242 (321)
T 3ow8_A          163 RGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG  242 (321)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE
Confidence            3456899999999999999999999999999999999999999988876       799999999999999999998888


Q ss_pred             eeCCCCCCCc
Q psy12376         76 VLGKHTKSKP   85 (89)
Q Consensus        76 ~l~~h~~~~~   85 (89)
                      .+.+|...+.
T Consensus       243 ~~~~h~~~v~  252 (321)
T 3ow8_A          243 TLSGHASWVL  252 (321)
T ss_dssp             EECCCSSCEE
T ss_pred             EEcCCCCceE
Confidence            9999987754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.74  E-value=5e-17  Score=104.37  Aligned_cols=84  Identities=15%  Similarity=0.162  Sum_probs=77.1

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|.+.|++++|+|+|++||+++.||.|++|+..+++....+.+|...|.+       ++|++|+.|+.|++||+++++.+
T Consensus        21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  100 (312)
T 4ery_A           21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL  100 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEE
Confidence            57788999999999999999999999999999999988899999988876       79999999999999999999988


Q ss_pred             eeeCCCCCCCc
Q psy12376         75 PVLGKHTKSKP   85 (89)
Q Consensus        75 ~~l~~h~~~~~   85 (89)
                      ..+.+|...+.
T Consensus       101 ~~~~~~~~~v~  111 (312)
T 4ery_A          101 KTLKGHSNYVF  111 (312)
T ss_dssp             EEEECCSSCEE
T ss_pred             EEEcCCCCCEE
Confidence            88888887653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.74  E-value=6.2e-17  Score=105.10  Aligned_cols=83  Identities=10%  Similarity=0.099  Sum_probs=74.0

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|...|.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|...|.+       ++|++|+.|++|++||++ +...
T Consensus        63 ~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~  141 (319)
T 3frx_A           63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCL  141 (319)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEE
T ss_pred             CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeE
Confidence            47788999999999999999999999999999999999999999998887       799999999999999997 4566


Q ss_pred             eeeCCCCCCCc
Q psy12376         75 PVLGKHTKSKP   85 (89)
Q Consensus        75 ~~l~~h~~~~~   85 (89)
                      ..+.+|...+.
T Consensus       142 ~~~~~h~~~v~  152 (319)
T 3frx_A          142 ATLLGHNDWVS  152 (319)
T ss_dssp             EEECCCSSCEE
T ss_pred             EEEeccCCcEE
Confidence            77778876543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.73  E-value=2.6e-17  Score=105.86  Aligned_cols=84  Identities=14%  Similarity=0.212  Sum_probs=71.4

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCC--CeEeeEecCCcceeec---------cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMT--SKRVPVLGKHTNTIVG---------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~--~~~~~~~~~h~~~i~~---------~~las~s~d~~v~iwd~~~   70 (89)
                      +|.+.|++++|+|+|++||+|+.|+.|+|||..+  ++.+..+.+|..+|.+         ++|++|+.|++|+|||+++
T Consensus         7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~   86 (297)
T 2pm7_B            7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN   86 (297)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred             CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence            5788999999999999999999999999999864  3567889999998876         5899999999999999987


Q ss_pred             CE--EEeeeCCCCCCCc
Q psy12376         71 SK--RVPVLGKHTKSKP   85 (89)
Q Consensus        71 ~~--~~~~l~~h~~~~~   85 (89)
                      +.  ....+.+|...+.
T Consensus        87 ~~~~~~~~~~~h~~~v~  103 (297)
T 2pm7_B           87 GRWSQIAVHAVHSASVN  103 (297)
T ss_dssp             SCBCCCEEECCCSSCEE
T ss_pred             CceEEEEEeecCCCcee
Confidence            63  4455677876654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.73  E-value=4.8e-17  Score=104.92  Aligned_cols=84  Identities=12%  Similarity=0.083  Sum_probs=75.1

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCC-EEE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTS-KRV   74 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~-~~~   74 (89)
                      |..++.+++|+|++++|++|+.|+.|++||..+++.+..+.+|...|.+       ++|++|+.|++|++||++++ ...
T Consensus        54 ~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~  133 (304)
T 2ynn_A           54 TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE  133 (304)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEE
T ss_pred             cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchh
Confidence            5667999999999999999999999999999999999999999998887       79999999999999999866 566


Q ss_pred             eeeCCCCCCCcC
Q psy12376         75 PVLGKHTKSKPS   86 (89)
Q Consensus        75 ~~l~~h~~~~~~   86 (89)
                      ..+.+|...+.+
T Consensus       134 ~~~~~h~~~v~~  145 (304)
T 2ynn_A          134 QTFEGHEHFVMC  145 (304)
T ss_dssp             EEECCCCSCEEE
T ss_pred             hhhcccCCcEEE
Confidence            778889876543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.73  E-value=1.1e-16  Score=102.84  Aligned_cols=84  Identities=15%  Similarity=0.222  Sum_probs=76.8

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|...|.+++|+|++++|++++.||.|++||.++++.+..+.+|...|.+       ++|++|+.|+.|++||+++++..
T Consensus        63 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  142 (312)
T 4ery_A           63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL  142 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEE
Confidence            46678999999999999999999999999999999999999999998876       79999999999999999999988


Q ss_pred             eeeCCCCCCCc
Q psy12376         75 PVLGKHTKSKP   85 (89)
Q Consensus        75 ~~l~~h~~~~~   85 (89)
                      ..+..|...+.
T Consensus       143 ~~~~~~~~~v~  153 (312)
T 4ery_A          143 KTLPAHSDPVS  153 (312)
T ss_dssp             EEECCCSSCEE
T ss_pred             EEecCCCCcEE
Confidence            88888887654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.72  E-value=4.5e-17  Score=109.04  Aligned_cols=84  Identities=10%  Similarity=0.128  Sum_probs=77.0

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|.+.|++++|+|+|++||+|+.||.|++||..+++.+..+.+|...|.+       ++|++|+.|++|++||++++...
T Consensus       148 ~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~  227 (410)
T 1vyh_C          148 GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV  227 (410)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            47788999999999999999999999999999999999999999998887       78999999999999999999998


Q ss_pred             eeeCCCCCCCc
Q psy12376         75 PVLGKHTKSKP   85 (89)
Q Consensus        75 ~~l~~h~~~~~   85 (89)
                      ..+.+|...+.
T Consensus       228 ~~~~~h~~~v~  238 (410)
T 1vyh_C          228 KTFTGHREWVR  238 (410)
T ss_dssp             EEEECCSSCEE
T ss_pred             EEEeCCCccEE
Confidence            88888887643

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.72  E-value=1.7e-16  Score=104.55  Aligned_cols=84  Identities=10%  Similarity=0.176  Sum_probs=76.7

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec---------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG---------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~---------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      |.+.|.+++|+|++..|++++.||.|++||+++++.+..+.+|...|.+         ++|++|+.|++|++||+++++.
T Consensus       153 h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~  232 (354)
T 2pbi_B          153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC  232 (354)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE
T ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            6677999999999999999999999999999999999999999987765         5899999999999999999999


Q ss_pred             EeeeCCCCCCCcC
Q psy12376         74 VPVLGKHTKSKPS   86 (89)
Q Consensus        74 ~~~l~~h~~~~~~   86 (89)
                      ...+.+|...+.+
T Consensus       233 ~~~~~~h~~~v~~  245 (354)
T 2pbi_B          233 VQAFETHESDVNS  245 (354)
T ss_dssp             EEEECCCSSCEEE
T ss_pred             EEEecCCCCCeEE
Confidence            9999999887653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.5e-16  Score=103.69  Aligned_cols=84  Identities=15%  Similarity=0.166  Sum_probs=69.5

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCC----CeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMT----SKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~----~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~   70 (89)
                      +|.+.|++++|+|+|++||+|+.|+.|++||.+.    .+.+..+.+|...|.+       ++|++|+.|++|+|||+.+
T Consensus       105 ~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~  184 (330)
T 2hes_X          105 GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD  184 (330)
T ss_dssp             ----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEET
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            4677899999999999999999999999999943    2456778899988876       7999999999999999976


Q ss_pred             C--EEEeeeCCCCCCCc
Q psy12376         71 S--KRVPVLGKHTKSKP   85 (89)
Q Consensus        71 ~--~~~~~l~~h~~~~~   85 (89)
                      +  +.+..+.+|...+.
T Consensus       185 ~~~~~~~~~~~h~~~v~  201 (330)
T 2hes_X          185 DDWECVAVLNGHEGTVW  201 (330)
T ss_dssp             TEEEEEEEECCCSSCEE
T ss_pred             CCeeEEEEccCCCCcEE
Confidence            6  56778889987754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.71  E-value=1.1e-16  Score=103.97  Aligned_cols=85  Identities=13%  Similarity=0.090  Sum_probs=74.5

Q ss_pred             CcCCcEEEEEEccCC-CEEEEEeCCCcEEEEeCCC-----CeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeC
Q psy12376          2 NLRYYIFLLQTSQVG-QVLAIGTARGNLTVYNHMT-----SKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         2 ~~~~~i~~~~~spdg-~~la~g~~~g~v~iwd~~~-----~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~   68 (89)
                      +|.++|++++|+|++ ++|++|+.|++|++|+...     +..+..+.+|...|.+       ++|++|+.|++|+|||+
T Consensus        15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~   94 (319)
T 3frx_A           15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV   94 (319)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            588899999999965 8999999999999999753     3346778899998876       79999999999999999


Q ss_pred             CCCEEEeeeCCCCCCCcC
Q psy12376         69 MTSKRVPVLGKHTKSKPS   86 (89)
Q Consensus        69 ~~~~~~~~l~~h~~~~~~   86 (89)
                      ++++....+.+|...+.+
T Consensus        95 ~~~~~~~~~~~h~~~v~~  112 (319)
T 3frx_A           95 ATGETYQRFVGHKSDVMS  112 (319)
T ss_dssp             TTTEEEEEEECCSSCEEE
T ss_pred             CCCCeeEEEccCCCcEEE
Confidence            999999999999887654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.70  E-value=3.8e-16  Score=99.47  Aligned_cols=84  Identities=11%  Similarity=0.140  Sum_probs=72.5

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCC----eEeeEecCCcceeec---------cEEEEEeCCCCEEEEeC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTS----KRVPVLGKHTNTIVG---------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~----~~~~~~~~h~~~i~~---------~~las~s~d~~v~iwd~   68 (89)
                      +|.+.|++++|+|+|++||+|+.||.|++||..++    +....+.+|...|.+         ++|++|+.|+.|++||+
T Consensus         9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~   88 (351)
T 3f3f_A            9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE   88 (351)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred             ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence            58889999999999999999999999999999875    456677889988876         58999999999999999


Q ss_pred             CCC---------EEEeeeCCCCCCCc
Q psy12376         69 MTS---------KRVPVLGKHTKSKP   85 (89)
Q Consensus        69 ~~~---------~~~~~l~~h~~~~~   85 (89)
                      +++         +....+..|...+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~v~  114 (351)
T 3f3f_A           89 DPDQEECSGRRWNKLCTLNDSKGSLY  114 (351)
T ss_dssp             CTTSCTTSSCSEEEEEEECCCSSCEE
T ss_pred             CCCcccccccCcceeeeecccCCcee
Confidence            876         56677788877654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.70  E-value=3.6e-16  Score=100.85  Aligned_cols=81  Identities=15%  Similarity=0.208  Sum_probs=72.7

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|.+.|++++|+|+|++|++++.||.|++||..+++.+..+.+|...|.+       ++|++++.|+.|++||+.+++..
T Consensus        30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  109 (369)
T 3zwl_B           30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV  109 (369)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            57889999999999999999999999999999999999999999998877       79999999999999999988877


Q ss_pred             eeeCCCCCC
Q psy12376         75 PVLGKHTKS   83 (89)
Q Consensus        75 ~~l~~h~~~   83 (89)
                      ..+. |...
T Consensus       110 ~~~~-~~~~  117 (369)
T 3zwl_B          110 ATWK-SPVP  117 (369)
T ss_dssp             EEEE-CSSC
T ss_pred             EEee-cCCC
Confidence            7665 4433

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.70  E-value=4.5e-16  Score=101.94  Aligned_cols=84  Identities=19%  Similarity=0.216  Sum_probs=71.8

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCC--eEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCC-
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTS--KRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTS-   71 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~--~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~-   71 (89)
                      +|.+.|++++|+|+|++||+|+.|+.+++||...+  +.+..+.+|...|.+       ++|++|+.|++|++||++++ 
T Consensus        59 ~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~  138 (345)
T 3fm0_A           59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED  138 (345)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS
T ss_pred             ccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC
Confidence            47788999999999999999999999999998765  456788899998887       79999999999999999765 


Q ss_pred             --EEEeeeCCCCCCCc
Q psy12376         72 --KRVPVLGKHTKSKP   85 (89)
Q Consensus        72 --~~~~~l~~h~~~~~   85 (89)
                        .....+.+|...+.
T Consensus       139 ~~~~~~~~~~h~~~v~  154 (345)
T 3fm0_A          139 EYECVSVLNSHTQDVK  154 (345)
T ss_dssp             CEEEEEEECCCCSCEE
T ss_pred             CeEEEEEecCcCCCeE
Confidence              34566788877653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.70  E-value=2.7e-16  Score=102.74  Aligned_cols=85  Identities=11%  Similarity=0.085  Sum_probs=74.4

Q ss_pred             CcCCcEEEEEE-----cc-CCCEEEEEeCCCcEEEEeCCCC-------eEeeEecCCcceeec-------cEEEEEeCCC
Q psy12376          2 NLRYYIFLLQT-----SQ-VGQVLAIGTARGNLTVYNHMTS-------KRVPVLGKHTNTIVG-------QVLAIGTARG   61 (89)
Q Consensus         2 ~~~~~i~~~~~-----sp-dg~~la~g~~~g~v~iwd~~~~-------~~~~~~~~h~~~i~~-------~~las~s~d~   61 (89)
                      +|.++|++++|     +| |+++||+|+.|++|++||...+       .....+.+|...|.+       .++++|+.|+
T Consensus        19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~   98 (343)
T 2xzm_R           19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK   98 (343)
T ss_dssp             CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTS
T ss_pred             cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCC
Confidence            58889999999     77 9999999999999999998643       345678899998877       7899999999


Q ss_pred             CEEEEeCCCCEEEeeeCCCCCCCcC
Q psy12376         62 NLTVYNHMTSKRVPVLGKHTKSKPS   86 (89)
Q Consensus        62 ~v~iwd~~~~~~~~~l~~h~~~~~~   86 (89)
                      +|++||+++++....+.+|...+.+
T Consensus        99 ~v~lwd~~~~~~~~~~~~h~~~v~~  123 (343)
T 2xzm_R           99 TLRLWDLRTGTTYKRFVGHQSEVYS  123 (343)
T ss_dssp             EEEEEETTSSCEEEEEECCCSCEEE
T ss_pred             cEEEEECCCCcEEEEEcCCCCcEEE
Confidence            9999999999988889999887643

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.69  E-value=1.9e-16  Score=104.51  Aligned_cols=82  Identities=9%  Similarity=0.065  Sum_probs=71.1

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeE----ecCCcceeec-------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPV----LGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~----~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~   72 (89)
                      ...|++++|+||+ .|++|+.||.|+|||+.+++.+..    +.+|...|.+       ++|++|+.|++|+|||+++++
T Consensus        82 ~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~  160 (344)
T 4gqb_B           82 EAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV  160 (344)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence            4569999999995 788999999999999998865433    4489998887       799999999999999999999


Q ss_pred             EEeeeCCCCCCCcC
Q psy12376         73 RVPVLGKHTKSKPS   86 (89)
Q Consensus        73 ~~~~l~~h~~~~~~   86 (89)
                      .+..+.+|...+.+
T Consensus       161 ~~~~~~~h~~~V~~  174 (344)
T 4gqb_B          161 VLSSYRAHAAQVTC  174 (344)
T ss_dssp             EEEEECCCSSCEEE
T ss_pred             EEEEEcCcCCceEE
Confidence            99999999987643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1.1e-15  Score=99.64  Aligned_cols=83  Identities=14%  Similarity=0.214  Sum_probs=66.1

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCC-------CeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeC
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMT-------SKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~-------~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~   68 (89)
                      |...|.+++|+|++++||+|+.|+.|++||...       .+.+..+.+|...|.+       ++||+|+.|++|+|||+
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~  136 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET  136 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence            778899999999999999999999999999843       3456778899998887       79999999999999999


Q ss_pred             CC----CEEEeeeCCCCCCCc
Q psy12376         69 MT----SKRVPVLGKHTKSKP   85 (89)
Q Consensus        69 ~~----~~~~~~l~~h~~~~~   85 (89)
                      +.    .+.+..+.+|...+.
T Consensus       137 ~~~~~~~~~~~~~~~h~~~v~  157 (330)
T 2hes_X          137 DESGEEYECISVLQEHSQDVK  157 (330)
T ss_dssp             CTTCCCCEEEEEECCCSSCEE
T ss_pred             cCCCCCeEEEEEeccCCCceE
Confidence            42    256677888987654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.68  E-value=3.2e-16  Score=101.55  Aligned_cols=84  Identities=17%  Similarity=0.226  Sum_probs=73.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCC--CCeEeeEecCCcceeec---------cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHM--TSKRVPVLGKHTNTIVG---------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~--~~~~~~~~~~h~~~i~~---------~~las~s~d~~v~iwd~~~   70 (89)
                      +|.+.|++++|+|+|++||+|+.||.|++||..  +++.+..+.+|...|.+         ++|++|+.|+.|++||+++
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~   88 (379)
T 3jrp_A            9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN   88 (379)
T ss_dssp             ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred             CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence            478899999999999999999999999999997  56677788899988876         6899999999999999998


Q ss_pred             CE--EEeeeCCCCCCCc
Q psy12376         71 SK--RVPVLGKHTKSKP   85 (89)
Q Consensus        71 ~~--~~~~l~~h~~~~~   85 (89)
                      ++  ....+..|...+.
T Consensus        89 ~~~~~~~~~~~~~~~v~  105 (379)
T 3jrp_A           89 GRWSQIAVHAVHSASVN  105 (379)
T ss_dssp             TEEEEEEEECCCSSCEE
T ss_pred             CceeEeeeecCCCcceE
Confidence            86  6667777876654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.68  E-value=1e-15  Score=101.11  Aligned_cols=80  Identities=13%  Similarity=0.151  Sum_probs=73.3

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      .|...|++++|+|++++|++++.||.|++||+++++.+..+.+|...|.+       ++|++++.|+.|++||+++++..
T Consensus       137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~  216 (420)
T 3vl1_A          137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI  216 (420)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence            47788999999999999999999999999999999988999999998887       78999999999999999999988


Q ss_pred             eeeCCCC
Q psy12376         75 PVLGKHT   81 (89)
Q Consensus        75 ~~l~~h~   81 (89)
                      ..+..|.
T Consensus       217 ~~~~~~~  223 (420)
T 3vl1_A          217 HTFNRKE  223 (420)
T ss_dssp             EEECBTT
T ss_pred             EEeecCC
Confidence            8887544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.68  E-value=1.8e-15  Score=98.84  Aligned_cols=77  Identities=8%  Similarity=0.144  Sum_probs=70.0

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|...|.+       ++|++|+.|++|++||+++++..
T Consensus       182 ~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~  261 (340)
T 1got_B          182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL  261 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Confidence            46778999999999999999999999999999999999999999998876       79999999999999999988776


Q ss_pred             eeeC
Q psy12376         75 PVLG   78 (89)
Q Consensus        75 ~~l~   78 (89)
                      ..+.
T Consensus       262 ~~~~  265 (340)
T 1got_B          262 MTYS  265 (340)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            6554

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.68  E-value=1.1e-15  Score=99.83  Aligned_cols=84  Identities=17%  Similarity=0.232  Sum_probs=73.4

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCC---
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTS---   71 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~---   71 (89)
                      +|.++|++++|+|||++|++|+.||.|++||..+++.+..+..|...|.+       ++|++|+.|+.+++||+.++   
T Consensus        53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~  132 (340)
T 1got_B           53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN  132 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc
Confidence            57889999999999999999999999999999999988888889888776       79999999999999999764   


Q ss_pred             -EEEeeeCCCCCCCc
Q psy12376         72 -KRVPVLGKHTKSKP   85 (89)
Q Consensus        72 -~~~~~l~~h~~~~~   85 (89)
                       .....+.+|...+.
T Consensus       133 ~~~~~~~~~h~~~v~  147 (340)
T 1got_B          133 VRVSRELAGHTGYLS  147 (340)
T ss_dssp             CEEEEEEECCSSCEE
T ss_pred             ceeEEEecCCCccEE
Confidence             34556778876654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.68  E-value=7e-16  Score=102.54  Aligned_cols=85  Identities=12%  Similarity=0.201  Sum_probs=71.4

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCC------------eEeeEecCCcceeec-------cEEEEEeCCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTS------------KRVPVLGKHTNTIVG-------QVLAIGTARGN   62 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~------------~~~~~~~~h~~~i~~-------~~las~s~d~~   62 (89)
                      +|.+.|++++|+|+|++|++|+.||.|++||+++.            .....+.+|...|.+       .+|++|+.|+.
T Consensus       254 ~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~  333 (393)
T 1erj_A          254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG  333 (393)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe
Confidence            46778999999999999999999999999998753            234566788887765       79999999999


Q ss_pred             EEEEeCCCCEEEeeeCCCCCCCcC
Q psy12376         63 LTVYNHMTSKRVPVLGKHTKSKPS   86 (89)
Q Consensus        63 v~iwd~~~~~~~~~l~~h~~~~~~   86 (89)
                      |++||+++++.+..+.+|...+.+
T Consensus       334 v~iwd~~~~~~~~~l~~h~~~v~~  357 (393)
T 1erj_A          334 VLFWDKKSGNPLLMLQGHRNSVIS  357 (393)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEE
T ss_pred             EEEEECCCCeEEEEECCCCCCEEE
Confidence            999999999998999999887643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.67  E-value=1.2e-15  Score=101.11  Aligned_cols=84  Identities=18%  Similarity=0.140  Sum_probs=74.6

Q ss_pred             CcCCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC-------eEeeEecCCcceeec--------cEEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMTS-------KRVPVLGKHTNTIVG--------QVLAIGTARGNLTV   65 (89)
Q Consensus         2 ~~~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~~-------~~~~~~~~h~~~i~~--------~~las~s~d~~v~i   65 (89)
                      +|.+.|++++|+| ++++||+|+.||.|++||+.++       +.+..+.+|...|.+        ++|++++.|+.|+|
T Consensus        79 ~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~i  158 (402)
T 2aq5_A           79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILV  158 (402)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEE
T ss_pred             cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEE
Confidence            4778899999999 9999999999999999999887       556788899998877        48999999999999


Q ss_pred             EeCCCCEEEeee--CCCCCCCc
Q psy12376         66 YNHMTSKRVPVL--GKHTKSKP   85 (89)
Q Consensus        66 wd~~~~~~~~~l--~~h~~~~~   85 (89)
                      ||+++++....+  ..|...+.
T Consensus       159 wd~~~~~~~~~~~~~~~~~~v~  180 (402)
T 2aq5_A          159 WDVGTGAAVLTLGPDVHPDTIY  180 (402)
T ss_dssp             EETTTTEEEEEECTTTCCSCEE
T ss_pred             EECCCCCccEEEecCCCCCceE
Confidence            999999998888  78887654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.67  E-value=8.7e-16  Score=100.59  Aligned_cols=85  Identities=14%  Similarity=0.162  Sum_probs=71.0

Q ss_pred             CcCC-cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEee---EecCCcceeec-------cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRY-YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVP---VLGKHTNTIVG-------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~-~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~---~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~   70 (89)
                      +|++ .+++++|+|+|++||+|+.||.|+|||..+++...   ...+|...|.+       ++|++|+.|++++|||+..
T Consensus        13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~   92 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ   92 (345)
T ss_dssp             CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred             CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence            4666 79999999999999999999999999998876432   23689988887       7999999999999999976


Q ss_pred             C--EEEeeeCCCCCCCcC
Q psy12376         71 S--KRVPVLGKHTKSKPS   86 (89)
Q Consensus        71 ~--~~~~~l~~h~~~~~~   86 (89)
                      +  +....+.+|...+.+
T Consensus        93 ~~~~~~~~~~~h~~~v~~  110 (345)
T 3fm0_A           93 DDFECVTTLEGHENEVKS  110 (345)
T ss_dssp             C-EEEEEEECCCSSCEEE
T ss_pred             CCeEEEEEccCCCCCceE
Confidence            5  456778899887643

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.67  E-value=3.4e-16  Score=103.65  Aligned_cols=85  Identities=19%  Similarity=0.238  Sum_probs=72.5

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCE--
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSK--   72 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~--   72 (89)
                      +|.++|++++|+|+|++||+|+.||+|++||..+++....+..|...|.+       ++|++|+.|+.++|||+.+..  
T Consensus        64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~  143 (380)
T 3iz6_a           64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR  143 (380)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC
T ss_pred             ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc
Confidence            57889999999999999999999999999999999999999999887765       899999999999999996432  


Q ss_pred             -----EEeeeCCCCCCCcC
Q psy12376         73 -----RVPVLGKHTKSKPS   86 (89)
Q Consensus        73 -----~~~~l~~h~~~~~~   86 (89)
                           ....+.+|...+.+
T Consensus       144 ~~~~~~~~~~~gh~~~v~~  162 (380)
T 3iz6_a          144 DGNMPVSRVLTGHKGYASS  162 (380)
T ss_dssp             CCSSTTCCBCCCCSSCCCC
T ss_pred             cCCccceeeccCCCcceEE
Confidence                 22346677766543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.67  E-value=9e-16  Score=101.07  Aligned_cols=70  Identities=14%  Similarity=0.209  Sum_probs=64.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCc-EEEEeCCCCeEeeEec-C-Ccceeec-------cEEEEEeCCCCEEEEeCCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGN-LTVYNHMTSKRVPVLG-K-HTNTIVG-------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~-v~iwd~~~~~~~~~~~-~-h~~~i~~-------~~las~s~d~~v~iwd~~~~   71 (89)
                      +|.++|++++|+|||++||+|+.||+ |++||.++++.+..+. + |...|.+       ++|++++.|++|+|||++.+
T Consensus       193 ~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          193 AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            47788999999999999999999998 9999999999998887 5 8888877       79999999999999999754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.67  E-value=1.6e-15  Score=99.09  Aligned_cols=72  Identities=11%  Similarity=0.111  Sum_probs=65.7

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      +|...|++++|+|++.+|++|+.||.|++||.++++.+..+.+|...|.+       ++|++++.|++|++||+.....
T Consensus        74 ~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~  152 (343)
T 2xzm_R           74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK  152 (343)
T ss_dssp             CCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce
Confidence            47788999999999999999999999999999999999999999998887       7999999999999999974433

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.66  E-value=7.9e-16  Score=101.51  Aligned_cols=76  Identities=9%  Similarity=0.114  Sum_probs=68.7

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      +|.+.|++++|+|+|++|++|+.||.|++||.++++.+..+.+|...|.+        .++++++.|+.|+|||+++++.
T Consensus       137 ~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~  216 (357)
T 4g56_B          137 EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP  216 (357)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce
Confidence            46788999999999999999999999999999999999999999998876        5899999999999999988776


Q ss_pred             Eeee
Q psy12376         74 VPVL   77 (89)
Q Consensus        74 ~~~l   77 (89)
                      ...+
T Consensus       217 ~~~~  220 (357)
T 4g56_B          217 ATRI  220 (357)
T ss_dssp             BCBC
T ss_pred             eeee
Confidence            5544

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.66  E-value=2.6e-15  Score=99.83  Aligned_cols=73  Identities=22%  Similarity=0.296  Sum_probs=67.3

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      .|++++|+|||++||+|+.||.|++||+.+++.+..+.+|...|.+       ++|++|+.|++|++||+++++....+.
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  204 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS  204 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence            4899999999999999999999999999999999999999998877       799999999999999999988776654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.66  E-value=1.1e-15  Score=107.97  Aligned_cols=85  Identities=14%  Similarity=0.126  Sum_probs=77.9

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|.+.|++++|||+|++||+++.+|.|.+||..+++.+..+.+|..+|.+       ++|++++.|+.|++||+.+++..
T Consensus        11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~   90 (814)
T 3mkq_A           11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV   90 (814)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE
T ss_pred             cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            46788999999999999999999999999999999999999999998887       79999999999999999999998


Q ss_pred             eeeCCCCCCCcC
Q psy12376         75 PVLGKHTKSKPS   86 (89)
Q Consensus        75 ~~l~~h~~~~~~   86 (89)
                      ..+.+|...+.+
T Consensus        91 ~~~~~~~~~v~~  102 (814)
T 3mkq_A           91 VDFEAHPDYIRS  102 (814)
T ss_dssp             EEEECCSSCEEE
T ss_pred             EEEecCCCCEEE
Confidence            989889877543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.65  E-value=1.4e-15  Score=100.29  Aligned_cols=83  Identities=17%  Similarity=0.127  Sum_probs=71.7

Q ss_pred             cCCcEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          3 LRYYIFLLQTSQVG-QVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         3 ~~~~i~~~~~spdg-~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      +...+++++|+|++ .+||+|+.|+.|++||+++++.+..+.+|...|.+        ++||+|+.|++|+|||+++++.
T Consensus       225 ~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~  304 (357)
T 4g56_B          225 SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV  304 (357)
T ss_dssp             CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred             ccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence            34568999999974 68999999999999999999999999999988876        5899999999999999999888


Q ss_pred             EeeeCCCCCCCcC
Q psy12376         74 VPVLGKHTKSKPS   86 (89)
Q Consensus        74 ~~~l~~h~~~~~~   86 (89)
                      ...+ +|...+.+
T Consensus       305 ~~~~-~H~~~V~~  316 (357)
T 4g56_B          305 FRDL-SHRDFVTG  316 (357)
T ss_dssp             EEEC-CCSSCEEE
T ss_pred             eEEC-CCCCCEEE
Confidence            7655 68877543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.65  E-value=1.9e-15  Score=101.51  Aligned_cols=79  Identities=11%  Similarity=0.086  Sum_probs=63.8

Q ss_pred             cCCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeE--eeEecCCcceeec--------cEEEEEeCCCCEEEEeCCCC
Q psy12376          3 LRYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMTSKR--VPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         3 ~~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~~~~--~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~~   71 (89)
                      |...|++|+|+| ++.+||+|+.||.|+|||..+++.  ...+.+|.+.|.+        ++|++|+.|++|+|||++++
T Consensus       118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~  197 (435)
T 4e54_B          118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN  197 (435)
T ss_dssp             CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred             CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence            456799999999 567999999999999999987654  3345689988876        69999999999999999876


Q ss_pred             EEEeeeCCCC
Q psy12376         72 KRVPVLGKHT   81 (89)
Q Consensus        72 ~~~~~l~~h~   81 (89)
                      ........|.
T Consensus       198 ~~~~~~~~~~  207 (435)
T 4e54_B          198 ILRVFASSDT  207 (435)
T ss_dssp             EEEEEECCSS
T ss_pred             ceeEEeccCC
Confidence            6555444443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.65  E-value=1.7e-15  Score=111.41  Aligned_cols=84  Identities=19%  Similarity=0.236  Sum_probs=78.0

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|.+.|++++|||||++||+|+.||.|++||..+++.+..+.+|...|.+       ++|++++.|++|+|||+.+++..
T Consensus       613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~  692 (1249)
T 3sfz_A          613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV  692 (1249)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceE
Confidence            47788999999999999999999999999999999999999999999887       79999999999999999999999


Q ss_pred             eeeCCCCCCCc
Q psy12376         75 PVLGKHTKSKP   85 (89)
Q Consensus        75 ~~l~~h~~~~~   85 (89)
                      ..+.+|...+.
T Consensus       693 ~~~~~~~~~v~  703 (1249)
T 3sfz_A          693 HTYDEHSEQVN  703 (1249)
T ss_dssp             EEEECCSSCEE
T ss_pred             EEEcCCCCcEE
Confidence            98888887654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.65  E-value=2.8e-15  Score=104.59  Aligned_cols=78  Identities=17%  Similarity=0.320  Sum_probs=69.7

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEec-------CCcceeec-------cEEEEEeCCCCEEEEe
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLG-------KHTNTIVG-------QVLAIGTARGNLTVYN   67 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~-------~h~~~i~~-------~~las~s~d~~v~iwd   67 (89)
                      +|.+.|++++|+|||++||+++.||.|++||..+++.+..+.       +|.+.|.+       ++|++++.|++|+|||
T Consensus       188 ~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd  267 (611)
T 1nr0_A          188 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN  267 (611)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            477889999999999999999999999999999998887774       79888876       7999999999999999


Q ss_pred             CCCCEEEeeeCC
Q psy12376         68 HMTSKRVPVLGK   79 (89)
Q Consensus        68 ~~~~~~~~~l~~   79 (89)
                      +++++....+..
T Consensus       268 ~~~~~~~~~~~~  279 (611)
T 1nr0_A          268 VATLKVEKTIPV  279 (611)
T ss_dssp             TTTTEEEEEEEC
T ss_pred             CCCCceeeeecC
Confidence            999888776643

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.65  E-value=2.3e-15  Score=105.03  Aligned_cols=84  Identities=14%  Similarity=0.214  Sum_probs=74.7

Q ss_pred             CcCCcEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          2 NLRYYIFLLQTSQVGQ-VLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~-~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      +|.+.|++++|+|++. .|++|+.|+.|++||..+++....+.+|...|.+       ++||+|+.|++|+|||+.+++.
T Consensus       145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~  224 (611)
T 1nr0_A          145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK  224 (611)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE
Confidence            4677899999999987 6999999999999999999988999999998887       7999999999999999998888


Q ss_pred             EeeeC-------CCCCCCc
Q psy12376         74 VPVLG-------KHTKSKP   85 (89)
Q Consensus        74 ~~~l~-------~h~~~~~   85 (89)
                      ...+.       +|...+.
T Consensus       225 ~~~~~~~~~~~~~h~~~V~  243 (611)
T 1nr0_A          225 TGVFEDDSLKNVAHSGSVF  243 (611)
T ss_dssp             EEECBCTTSSSCSSSSCEE
T ss_pred             eeeeccccccccccCCCEE
Confidence            77773       6877654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.65  E-value=1.6e-15  Score=103.70  Aligned_cols=82  Identities=17%  Similarity=0.250  Sum_probs=73.4

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|...|++++|+|||++||+++.|+.|++||. +++.+..+.+|...|.+       ++||+++.|+.|+|||. +++.+
T Consensus       465 ~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~  542 (577)
T 2ymu_A          465 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLL  542 (577)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEE
T ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEE
Confidence            46778999999999999999999999999995 67888899999998876       79999999999999996 67888


Q ss_pred             eeeCCCCCCCc
Q psy12376         75 PVLGKHTKSKP   85 (89)
Q Consensus        75 ~~l~~h~~~~~   85 (89)
                      ..+.+|+..+.
T Consensus       543 ~~~~~h~~~v~  553 (577)
T 2ymu_A          543 QTLTGHSSSVW  553 (577)
T ss_dssp             EEEECCSSCEE
T ss_pred             EEEcCCCCCEE
Confidence            88999988764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.64  E-value=3.1e-15  Score=99.07  Aligned_cols=85  Identities=16%  Similarity=0.263  Sum_probs=70.7

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcc-------eeec-------cEEEEEeCCCCEEEEe
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTN-------TIVG-------QVLAIGTARGNLTVYN   67 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~-------~i~~-------~~las~s~d~~v~iwd   67 (89)
                      +|...|++++|+|+|++|++|+.||.|++||+++++.+..+..+..       .+.+       ++|++|+.|+.|++||
T Consensus       247 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd  326 (380)
T 3iz6_a          247 GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD  326 (380)
T ss_dssp             CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEE
Confidence            4677899999999999999999999999999999988877765422       2332       8999999999999999


Q ss_pred             CCCCEEEeee----CCCCCCCcC
Q psy12376         68 HMTSKRVPVL----GKHTKSKPS   86 (89)
Q Consensus        68 ~~~~~~~~~l----~~h~~~~~~   86 (89)
                      +..++....+    .+|...+.+
T Consensus       327 ~~~~~~~~~~~~~~~~h~~~v~~  349 (380)
T 3iz6_a          327 TLLAEMVLNLGTLQNSHEGRISC  349 (380)
T ss_dssp             TTTCCEEEEECCSCSSCCCCCCE
T ss_pred             CCCCceEEEEecccCCCCCceEE
Confidence            9888877666    578877654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.64  E-value=5e-15  Score=98.93  Aligned_cols=82  Identities=20%  Similarity=0.323  Sum_probs=72.7

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----cEEEEEeCCCCEEEEeCCC-CEEEee
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----QVLAIGTARGNLTVYNHMT-SKRVPV   76 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----~~las~s~d~~v~iwd~~~-~~~~~~   76 (89)
                      |.+.|++|+|+|||++||+|+.||.|++||..+++.+..+.+|...+.+     .+|++|+.|+.+.+||... ......
T Consensus       146 ~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~  225 (420)
T 4gga_A          146 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVAT  225 (420)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEE
Confidence            5567999999999999999999999999999999999999999998887     8999999999999999975 455566


Q ss_pred             eCCCCCCC
Q psy12376         77 LGKHTKSK   84 (89)
Q Consensus        77 l~~h~~~~   84 (89)
                      +.+|...+
T Consensus       226 ~~~h~~~~  233 (420)
T 4gga_A          226 LSGHSQEV  233 (420)
T ss_dssp             EECCSSCE
T ss_pred             ecccccce
Confidence            77777654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.64  E-value=4.3e-15  Score=98.93  Aligned_cols=83  Identities=13%  Similarity=0.157  Sum_probs=73.1

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEec-CCcceeec-----------cEEEEEeCCCCEEEEeCCC
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLG-KHTNTIVG-----------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~-~h~~~i~~-----------~~las~s~d~~v~iwd~~~   70 (89)
                      |...|++++|+|++++|++|+.||.|++||+++++.+..+. +|..+|.+           .+|++|+.|+.|+|||+++
T Consensus       213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~  292 (437)
T 3gre_A          213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK  292 (437)
T ss_dssp             GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence            56789999999999999999999999999999999888876 67777665           4999999999999999999


Q ss_pred             CEEEeeeCCCCCCCc
Q psy12376         71 SKRVPVLGKHTKSKP   85 (89)
Q Consensus        71 ~~~~~~l~~h~~~~~   85 (89)
                      ++....+.+|...+.
T Consensus       293 ~~~~~~~~~~~~~~~  307 (437)
T 3gre_A          293 GHCQYAFINSDEQPS  307 (437)
T ss_dssp             TEEEEEEESSSSCCC
T ss_pred             CcEEEEEEcCCCCCc
Confidence            999888888765543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.64  E-value=5.8e-15  Score=94.70  Aligned_cols=81  Identities=14%  Similarity=0.199  Sum_probs=68.8

Q ss_pred             CcCCcEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCe-----EeeEecCCcceeec-------cEEEEEeCCCCEEEEeC
Q psy12376          2 NLRYYIFLLQTSQV-GQVLAIGTARGNLTVYNHMTSK-----RVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         2 ~~~~~i~~~~~spd-g~~la~g~~~g~v~iwd~~~~~-----~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~   68 (89)
                      +|.+.|++|+|+|+ +++||+|+.||+|+|||+.+++     ....+.+|...|.+       ++|++++.|+.|++|+.
T Consensus        36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~  115 (340)
T 4aow_A           36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL  115 (340)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEee
Confidence            58899999999998 6899999999999999987543     45678899998887       79999999999999999


Q ss_pred             CCCEEEeeeCCCCC
Q psy12376         69 MTSKRVPVLGKHTK   82 (89)
Q Consensus        69 ~~~~~~~~l~~h~~   82 (89)
                      ...........+..
T Consensus       116 ~~~~~~~~~~~~~~  129 (340)
T 4aow_A          116 TTGTTTRRFVGHTK  129 (340)
T ss_dssp             TTTEEEEEEECCSS
T ss_pred             cccceeeeecCCCC
Confidence            88877766655443

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.63  E-value=9.7e-15  Score=96.09  Aligned_cols=85  Identities=15%  Similarity=0.244  Sum_probs=72.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCc--ceeec-------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHT--NTIVG-------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~--~~i~~-------~~las~s~d~~v~iwd~~~~~   72 (89)
                      .|...|.+++|+|+|.+||+|+.|+.|++||++.++.+..+..+.  ..+.+       .+|++|+.|++|+|||+.++.
T Consensus       238 ~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~  317 (354)
T 2pbi_B          238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS  317 (354)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred             CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence            467789999999999999999999999999999988777665432  23333       799999999999999999898


Q ss_pred             EEeeeCCCCCCCcC
Q psy12376         73 RVPVLGKHTKSKPS   86 (89)
Q Consensus        73 ~~~~l~~h~~~~~~   86 (89)
                      .+..+.+|...+.+
T Consensus       318 ~~~~l~~h~~~v~~  331 (354)
T 2pbi_B          318 RVSILFGHENRVST  331 (354)
T ss_dssp             EEEEECCCSSCEEE
T ss_pred             eEEEEECCCCcEEE
Confidence            88899999987653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.63  E-value=1.1e-15  Score=101.81  Aligned_cols=76  Identities=11%  Similarity=0.134  Sum_probs=63.4

Q ss_pred             CcCCcEEEEEEcc--------CCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQ--------VGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTV   65 (89)
Q Consensus         2 ~~~~~i~~~~~sp--------dg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~i   65 (89)
                      +|.+.|.+++|+|        ||++||+++.|++|+|||++++..+..+.+|..++.+        .+|++|+.|++|++
T Consensus       134 gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~  213 (393)
T 4gq1_A          134 GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRI  213 (393)
T ss_dssp             SCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred             CCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEE
Confidence            5788999999998        8999999999999999999888777777777777766        58999999999999


Q ss_pred             EeCCCCEEEeee
Q psy12376         66 YNHMTSKRVPVL   77 (89)
Q Consensus        66 wd~~~~~~~~~l   77 (89)
                      ||+++++.....
T Consensus       214 wd~~t~~~~~~~  225 (393)
T 4gq1_A          214 FDWTLNLSAEEN  225 (393)
T ss_dssp             EETTCCC-----
T ss_pred             EECCCCcccccc
Confidence            999887665444

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.63  E-value=7.1e-15  Score=94.81  Aligned_cols=83  Identities=18%  Similarity=0.189  Sum_probs=73.6

Q ss_pred             cCCcEEEEEEccC----CCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCC
Q psy12376          3 LRYYIFLLQTSQV----GQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         3 ~~~~i~~~~~spd----g~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~   70 (89)
                      +...|++++|+|+    |++|++|+.||.|++||..+++.+..+.+|...|.+        ++|++|+.|+.|++||+++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            4467999999999    679999999999999999999999999999998877        6899999999999999999


Q ss_pred             CEEEeee---CCCCCCCc
Q psy12376         71 SKRVPVL---GKHTKSKP   85 (89)
Q Consensus        71 ~~~~~~l---~~h~~~~~   85 (89)
                      ++....+   .+|...+.
T Consensus       148 ~~~~~~~~~~~~~~~~v~  165 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVL  165 (366)
T ss_dssp             TEEEEEECSTTSCSSCEE
T ss_pred             CeEEEEecccccccCcee
Confidence            9888877   57776654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.62  E-value=3.5e-15  Score=96.16  Aligned_cols=83  Identities=11%  Similarity=0.181  Sum_probs=70.3

Q ss_pred             CcCCcEEEEEEccC---CCEEEEEeCCCcEEEEeCCC-CeEe-eEecCCcceeec-------cEEEEEeCCCCEEEEeCC
Q psy12376          2 NLRYYIFLLQTSQV---GQVLAIGTARGNLTVYNHMT-SKRV-PVLGKHTNTIVG-------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         2 ~~~~~i~~~~~spd---g~~la~g~~~g~v~iwd~~~-~~~~-~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~   69 (89)
                      +|.+.|++++|+|+   |++|++|+.||.|++||..+ ++.+ ..+.+|...|.+       ++|++++.|+.|++||++
T Consensus        37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~  116 (368)
T 3mmy_A           37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS  116 (368)
T ss_dssp             CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC
Confidence            47788999999999   69999999999999999986 5554 677889998887       799999999999999999


Q ss_pred             CCEEEeeeCCCCCCCc
Q psy12376         70 TSKRVPVLGKHTKSKP   85 (89)
Q Consensus        70 ~~~~~~~l~~h~~~~~   85 (89)
                      +++... +..|...+.
T Consensus       117 ~~~~~~-~~~~~~~v~  131 (368)
T 3mmy_A          117 SNQAIQ-IAQHDAPVK  131 (368)
T ss_dssp             TTEEEE-EEECSSCEE
T ss_pred             CCCcee-eccccCceE
Confidence            888766 445666543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.62  E-value=3.5e-15  Score=94.99  Aligned_cols=76  Identities=18%  Similarity=0.305  Sum_probs=65.5

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEec--CCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLG--KHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~--~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      +.+|+||+++ .||+|. |++|+|||+.+|+.+..+.  +|...|.+       ++|++|+.|++|+|||+++++.+..+
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            4679999986 788775 8999999999999877664  57777776       89999999999999999999999999


Q ss_pred             CCCCCCC
Q psy12376         78 GKHTKSK   84 (89)
Q Consensus        78 ~~h~~~~   84 (89)
                      .+|...+
T Consensus       106 ~~h~~~~  112 (318)
T 4ggc_A          106 TSHSARV  112 (318)
T ss_dssp             ECCSSCE
T ss_pred             cCccceE
Confidence            8988764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.62  E-value=1.4e-14  Score=95.99  Aligned_cols=82  Identities=15%  Similarity=0.121  Sum_probs=73.7

Q ss_pred             CcCCcEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEeeEe--cCCcceeec-------cEEEEEeCCCCEEEEeCCCC
Q psy12376          2 NLRYYIFLLQTSQVG-QVLAIGTARGNLTVYNHMTSKRVPVL--GKHTNTIVG-------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         2 ~~~~~i~~~~~spdg-~~la~g~~~g~v~iwd~~~~~~~~~~--~~h~~~i~~-------~~las~s~d~~v~iwd~~~~   71 (89)
                      +|...|++++|+|++ .+|++++.||.|++||+++++.+..+  .+|...|.+       ++|++++.|+.|++||++++
T Consensus       129 ~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  208 (402)
T 2aq5_A          129 GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG  208 (402)
T ss_dssp             CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT
T ss_pred             CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC
Confidence            467789999999998 69999999999999999999998888  789888877       78999999999999999999


Q ss_pred             EEEeee-CCCCCC
Q psy12376         72 KRVPVL-GKHTKS   83 (89)
Q Consensus        72 ~~~~~l-~~h~~~   83 (89)
                      +....+ ..|...
T Consensus       209 ~~~~~~~~~~~~~  221 (402)
T 2aq5_A          209 TVVAEKDRPHEGT  221 (402)
T ss_dssp             EEEEEEECSSCSS
T ss_pred             ceeeeeccCCCCC
Confidence            988887 677754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.62  E-value=8.5e-15  Score=103.15  Aligned_cols=83  Identities=12%  Similarity=0.181  Sum_probs=71.1

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|...|.+++|+|+|++|++|+.||.|++||..+++.+..+.+|...|.+       ++|++|+.|++|+|||+......
T Consensus       428 ~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~  507 (694)
T 3dm0_A          428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY  507 (694)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce
Confidence            47788999999999999999999999999999999999999999998887       78999999999999999765444


Q ss_pred             eee---CCCCCCC
Q psy12376         75 PVL---GKHTKSK   84 (89)
Q Consensus        75 ~~l---~~h~~~~   84 (89)
                      ...   .+|...+
T Consensus       508 ~~~~~~~~h~~~v  520 (694)
T 3dm0_A          508 TISEGGEGHRDWV  520 (694)
T ss_dssp             EECSSTTSCSSCE
T ss_pred             eeccCCCCCCCcE
Confidence            332   3565544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.62  E-value=7.4e-15  Score=103.44  Aligned_cols=85  Identities=13%  Similarity=0.139  Sum_probs=74.4

Q ss_pred             CcCCcEEEEEEccCC-CEEEEEeCCCcEEEEeCCC-----CeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeC
Q psy12376          2 NLRYYIFLLQTSQVG-QVLAIGTARGNLTVYNHMT-----SKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         2 ~~~~~i~~~~~spdg-~~la~g~~~g~v~iwd~~~-----~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~   68 (89)
                      +|.+.|++++|+|++ ++|++|+.||.|++||...     +.....+.+|...|.+       ++|++|+.|++|+|||+
T Consensus       380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~  459 (694)
T 3dm0_A          380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL  459 (694)
T ss_dssp             CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            588999999999975 7999999999999999865     3345678899998887       79999999999999999


Q ss_pred             CCCEEEeeeCCCCCCCcC
Q psy12376         69 MTSKRVPVLGKHTKSKPS   86 (89)
Q Consensus        69 ~~~~~~~~l~~h~~~~~~   86 (89)
                      .++.....+.+|...+.+
T Consensus       460 ~~~~~~~~~~~h~~~v~~  477 (694)
T 3dm0_A          460 AAGVSTRRFVGHTKDVLS  477 (694)
T ss_dssp             TTTEEEEEEECCSSCEEE
T ss_pred             CCCcceeEEeCCCCCEEE
Confidence            999999999999987653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.61  E-value=5.5e-15  Score=96.37  Aligned_cols=85  Identities=13%  Similarity=0.110  Sum_probs=69.1

Q ss_pred             CcCCcEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCeEeeEecC-Ccceeec-------cEEEEEeCCCCEEEEeCCCC
Q psy12376          2 NLRYYIFLLQTSQ--VGQVLAIGTARGNLTVYNHMTSKRVPVLGK-HTNTIVG-------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         2 ~~~~~i~~~~~sp--dg~~la~g~~~g~v~iwd~~~~~~~~~~~~-h~~~i~~-------~~las~s~d~~v~iwd~~~~   71 (89)
                      +|.++|.+++|+|  ++++|++++.||.|++||+++++.+..... |...+.+       .+|++|+.|+.|+|||++++
T Consensus       123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~  202 (343)
T 3lrv_A          123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP  202 (343)
T ss_dssp             CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT
T ss_pred             CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence            3557899999999  999999999999999999999888666643 4445655       79999999999999999988


Q ss_pred             EEE-eeeCC-CCCCCcC
Q psy12376         72 KRV-PVLGK-HTKSKPS   86 (89)
Q Consensus        72 ~~~-~~l~~-h~~~~~~   86 (89)
                      +.. ..+.. |...+.+
T Consensus       203 ~~~~~~~~~~h~~~v~~  219 (343)
T 3lrv_A          203 DQASSRFPVDEEAKIKE  219 (343)
T ss_dssp             TSCCEECCCCTTSCEEE
T ss_pred             CCCccEEeccCCCCEEE
Confidence            766 56666 8876543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.61  E-value=1.4e-14  Score=96.20  Aligned_cols=83  Identities=17%  Similarity=0.310  Sum_probs=74.7

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----cEEEEEeCCCCEEEEeCC-CCEEEee
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----QVLAIGTARGNLTVYNHM-TSKRVPV   76 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----~~las~s~d~~v~iwd~~-~~~~~~~   76 (89)
                      +...|++++|+|+|++|++|+.||.|++||..+++.+..+.+|...|.+     ++|++++.|+.|++||++ .+.....
T Consensus       133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  212 (401)
T 4aez_A          133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGT  212 (401)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeE
Confidence            5678999999999999999999999999999999999999999998887     899999999999999998 5667777


Q ss_pred             eCCCCCCCc
Q psy12376         77 LGKHTKSKP   85 (89)
Q Consensus        77 l~~h~~~~~   85 (89)
                      +.+|...+.
T Consensus       213 ~~~~~~~v~  221 (401)
T 4aez_A          213 LQGHSSEVC  221 (401)
T ss_dssp             EECCSSCEE
T ss_pred             EcCCCCCee
Confidence            888887654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.60  E-value=1.3e-14  Score=106.68  Aligned_cols=84  Identities=17%  Similarity=0.149  Sum_probs=77.4

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec---------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG---------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~---------~~las~s~d~~v~iwd~~~~~   72 (89)
                      +|.+.|++++|+|+|++||+++.||.|++||..+++.+..+.+|...|.+         .++++|+.|+.|++||++++.
T Consensus       655 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~  734 (1249)
T 3sfz_A          655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE  734 (1249)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS
T ss_pred             cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc
Confidence            46788999999999999999999999999999999999999999998876         489999999999999999999


Q ss_pred             EEeeeCCCCCCCc
Q psy12376         73 RVPVLGKHTKSKP   85 (89)
Q Consensus        73 ~~~~l~~h~~~~~   85 (89)
                      ....+.+|...+.
T Consensus       735 ~~~~~~~h~~~v~  747 (1249)
T 3sfz_A          735 CRNTMFGHTNSVN  747 (1249)
T ss_dssp             EEEEECCCSSCEE
T ss_pred             hhheecCCCCCEE
Confidence            9999999988764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.59  E-value=4.7e-16  Score=101.60  Aligned_cols=82  Identities=12%  Similarity=0.139  Sum_probs=66.4

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCC--eEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCE--
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTS--KRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSK--   72 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~--~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~--   72 (89)
                      .++|++++|+|+|++||+|+.||.|++||..++  +.+..+.+|...|.+       ++|++++.|++|++||+.++.  
T Consensus        11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~   90 (377)
T 3dwl_C           11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW   90 (377)
T ss_dssp             SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CC
T ss_pred             CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce
Confidence            467999999999999999999999999999988  677888899998887       799999999999999998776  


Q ss_pred             -EEeeeCCCCCCCc
Q psy12376         73 -RVPVLGKHTKSKP   85 (89)
Q Consensus        73 -~~~~l~~h~~~~~   85 (89)
                       ....+.+|...+.
T Consensus        91 ~~~~~~~~~~~~v~  104 (377)
T 3dwl_C           91 KQTLVLLRLNRAAT  104 (377)
T ss_dssp             CCEEECCCCSSCEE
T ss_pred             eeeeEecccCCceE
Confidence             4556677876654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.59  E-value=4.6e-14  Score=90.13  Aligned_cols=84  Identities=18%  Similarity=0.209  Sum_probs=72.7

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCe--EeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSK--RVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~--~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~   72 (89)
                      .+...+.+++|+|++++|++++.||.|++||..+++  ....+..|...+.+       ++|++++.|+.|++||+++++
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~  174 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT  174 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence            456789999999999999999999999999998876  55667788887766       799999999999999999999


Q ss_pred             EEeeeCCCCCCCc
Q psy12376         73 RVPVLGKHTKSKP   85 (89)
Q Consensus        73 ~~~~l~~h~~~~~   85 (89)
                      ....+..|...+.
T Consensus       175 ~~~~~~~~~~~i~  187 (337)
T 1gxr_A          175 LVRQFQGHTDGAS  187 (337)
T ss_dssp             EEEEECCCSSCEE
T ss_pred             eeeeeecccCceE
Confidence            8888888887654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.59  E-value=1.4e-14  Score=92.22  Aligned_cols=73  Identities=12%  Similarity=0.230  Sum_probs=63.4

Q ss_pred             CcCCcEEEEEEccCC----CEEEEEeCCCcEEEEeCCCC-----------------------------------------
Q psy12376          2 NLRYYIFLLQTSQVG----QVLAIGTARGNLTVYNHMTS-----------------------------------------   36 (89)
Q Consensus         2 ~~~~~i~~~~~spdg----~~la~g~~~g~v~iwd~~~~-----------------------------------------   36 (89)
                      +|...|++++|+|++    ++|++++.||.|++||.+.+                                         
T Consensus       212 ~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (351)
T 3f3f_A          212 GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ  291 (351)
T ss_dssp             CCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------C
T ss_pred             CCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence            467789999999998    89999999999999999764                                         


Q ss_pred             -----eEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376         37 -----KRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus        37 -----~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                           +.+..+.+|...|.+       ++|++|+.|+.|+|||+.+++..
T Consensus       292 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          292 SNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             CSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred             ccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence                 556677889888877       79999999999999999876433

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.59  E-value=1e-14  Score=94.60  Aligned_cols=83  Identities=16%  Similarity=0.162  Sum_probs=71.0

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCe--EeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSK--RVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~--~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      |.++|++++|+|+|++||+++.||.|++||..+++  .+..+.+|...|.+       ++|++++.|+.|++||+++++.
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~   86 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   86 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence            56789999999999999999999999999999887  77888899988877       7999999999999999988765


Q ss_pred             Eee--eCCCCCCCc
Q psy12376         74 VPV--LGKHTKSKP   85 (89)
Q Consensus        74 ~~~--l~~h~~~~~   85 (89)
                      ...  +..|...+.
T Consensus        87 ~~~~~~~~~~~~v~  100 (372)
T 1k8k_C           87 KPTLVILRINRAAR  100 (372)
T ss_dssp             EEEEECCCCSSCEE
T ss_pred             eeeEEeecCCCcee
Confidence            443  356665543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.59  E-value=1.9e-14  Score=98.47  Aligned_cols=84  Identities=19%  Similarity=0.244  Sum_probs=74.0

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecC-Ccceeec-----------------cEEEEEeCCCCE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGK-HTNTIVG-----------------QVLAIGTARGNL   63 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~-h~~~i~~-----------------~~las~s~d~~v   63 (89)
                      .|...|++++|+|+|++|++++.||.|++||..+++.+..+.+ |...|.+                 ++||+|+.|+.|
T Consensus       486 ~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i  565 (615)
T 1pgu_A          486 PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNI  565 (615)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCE
T ss_pred             CccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcE
Confidence            3567899999999999999999999999999999999888877 8877654                 489999999999


Q ss_pred             EEEeCCCC-EEEeeeCCCCCCCc
Q psy12376         64 TVYNHMTS-KRVPVLGKHTKSKP   85 (89)
Q Consensus        64 ~iwd~~~~-~~~~~l~~h~~~~~   85 (89)
                      ++||+.++ +....+.+|...+.
T Consensus       566 ~iw~~~~~~~~~~~~~~h~~~v~  588 (615)
T 1pgu_A          566 FIYSVKRPMKIIKALNAHKDGVN  588 (615)
T ss_dssp             EEEESSCTTCCEEETTSSTTCEE
T ss_pred             EEEECCCCceechhhhcCccceE
Confidence            99999887 77788888987654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.58  E-value=1.7e-14  Score=94.46  Aligned_cols=75  Identities=24%  Similarity=0.363  Sum_probs=69.8

Q ss_pred             CCcEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeEeeEecC-------------Ccceeec-------cEEEEEeCC
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTAR---GNLTVYNHMTSKRVPVLGK-------------HTNTIVG-------QVLAIGTAR   60 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~---g~v~iwd~~~~~~~~~~~~-------------h~~~i~~-------~~las~s~d   60 (89)
                      ...+.+++|+|++++|++++.|   |.|++||.++++.+..+.+             |...|.+       ++|++++.|
T Consensus       233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  312 (397)
T 1sq9_A          233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD  312 (397)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred             CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC
Confidence            6789999999999999999999   9999999999999888888             8888876       799999999


Q ss_pred             CCEEEEeCCCCEEEeeeC
Q psy12376         61 GNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus        61 ~~v~iwd~~~~~~~~~l~   78 (89)
                      +.|+|||+++++.+..+.
T Consensus       313 g~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          313 GKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             SEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEEcCCCceeEEEe
Confidence            999999999999888887

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.58  E-value=4.4e-15  Score=97.02  Aligned_cols=84  Identities=11%  Similarity=0.070  Sum_probs=62.7

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCe---EeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSK---RVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~---~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~   71 (89)
                      +|...|++++|+|+|++|++++.||.|++||..+++   ....+.+|...|.+       ++|++++.|+.|++||++++
T Consensus        53 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  132 (377)
T 3dwl_C           53 DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE  132 (377)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---
T ss_pred             cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCc
Confidence            467789999999999999999999999999998876   56667789888877       78999999999999999877


Q ss_pred             EE---EeeeCC-CCCCCc
Q psy12376         72 KR---VPVLGK-HTKSKP   85 (89)
Q Consensus        72 ~~---~~~l~~-h~~~~~   85 (89)
                      +.   ...+.+ |...+.
T Consensus       133 ~~~~~~~~~~~~h~~~v~  150 (377)
T 3dwl_C          133 NDWWVSKHLKRPLRSTIL  150 (377)
T ss_dssp             --CCCCEEECSSCCSCEE
T ss_pred             ccceeeeEeecccCCCeE
Confidence            63   455555 876654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.58  E-value=8.5e-14  Score=91.13  Aligned_cols=80  Identities=18%  Similarity=0.214  Sum_probs=69.2

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      |.+.|++++|+|+|++|++++.||.|++|| .+++.+..+.+|...|.+       ++|++++.|+.|++||+.+++...
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  185 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ  185 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence            456899999999999999999999999999 567788889999988877       789999999999999999999888


Q ss_pred             eeCCCCCC
Q psy12376         76 VLGKHTKS   83 (89)
Q Consensus        76 ~l~~h~~~   83 (89)
                      .+..|...
T Consensus       186 ~~~~~~~~  193 (425)
T 1r5m_A          186 HFELKETG  193 (425)
T ss_dssp             EECCC---
T ss_pred             EeeccccC
Confidence            87766554

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.57  E-value=1.5e-14  Score=105.51  Aligned_cols=85  Identities=8%  Similarity=0.117  Sum_probs=70.6

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCe--------------------------------------------
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSK--------------------------------------------   37 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~--------------------------------------------   37 (89)
                      +|...|++++|||||++||+|+.||+|+|||..+++                                            
T Consensus       486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  565 (902)
T 2oaj_A          486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF  565 (902)
T ss_dssp             SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred             CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence            466789999999999999999999999999987652                                            


Q ss_pred             -EeeEecCCcceeec------cEEEEEeCCCCEEEEeCCCCEEEe-----eeC-CCCCCCcC
Q psy12376         38 -RVPVLGKHTNTIVG------QVLAIGTARGNLTVYNHMTSKRVP-----VLG-KHTKSKPS   86 (89)
Q Consensus        38 -~~~~~~~h~~~i~~------~~las~s~d~~v~iwd~~~~~~~~-----~l~-~h~~~~~~   86 (89)
                       .+..+.+|.+.|.+      .+||+|+.|++|+|||++++..+.     .+. +|+..+.+
T Consensus       566 ~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~s  627 (902)
T 2oaj_A          566 MPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTC  627 (902)
T ss_dssp             EEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEE
T ss_pred             ceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEE
Confidence             35677889998887      699999999999999998877653     233 78776654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.57  E-value=4.8e-14  Score=94.42  Aligned_cols=81  Identities=17%  Similarity=0.268  Sum_probs=72.6

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      +...|++++|  ++++|++|+.||.|++||..+++.+..+.+|...|.+     ++|++|+.|++|++||+.+++....+
T Consensus       132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  209 (435)
T 1p22_A          132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTL  209 (435)
T ss_dssp             SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEE
T ss_pred             CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence            3455788776  8899999999999999999999999999999999887     89999999999999999999999999


Q ss_pred             CCCCCCCc
Q psy12376         78 GKHTKSKP   85 (89)
Q Consensus        78 ~~h~~~~~   85 (89)
                      .+|...+.
T Consensus       210 ~~h~~~v~  217 (435)
T 1p22_A          210 IHHCEAVL  217 (435)
T ss_dssp             CCCCSCEE
T ss_pred             cCCCCcEE
Confidence            88887654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.57  E-value=5.8e-14  Score=94.09  Aligned_cols=76  Identities=11%  Similarity=0.066  Sum_probs=68.8

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----cEEEEEeCCCCEEEEeCCCCEEEee
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----QVLAIGTARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----~~las~s~d~~v~iwd~~~~~~~~~   76 (89)
                      +|...|++++|+|++++|++|+.||.|++||.++++.+..+.+|...|.+     ++|++++.|+.|++||++++.....
T Consensus       308 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~  387 (464)
T 3v7d_B          308 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFS  387 (464)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeee
Confidence            46778999999999999999999999999999999999999999998887     8999999999999999987765544


Q ss_pred             e
Q psy12376         77 L   77 (89)
Q Consensus        77 l   77 (89)
                      .
T Consensus       388 ~  388 (464)
T 3v7d_B          388 Y  388 (464)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.57  E-value=2e-14  Score=101.57  Aligned_cols=85  Identities=12%  Similarity=0.074  Sum_probs=75.7

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCC-EE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTS-KR   73 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~-~~   73 (89)
                      .|..+|++++|+|+|++||+|+.||.|++||..+++.+..+.+|...|.+       ++|++++.|+.|++||+.++ ..
T Consensus        53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~  132 (814)
T 3mkq_A           53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL  132 (814)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE
T ss_pred             cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE
Confidence            36778999999999999999999999999999999999999999998887       68999999999999999876 77


Q ss_pred             EeeeCCCCCCCcC
Q psy12376         74 VPVLGKHTKSKPS   86 (89)
Q Consensus        74 ~~~l~~h~~~~~~   86 (89)
                      ...+.+|...+.+
T Consensus       133 ~~~~~~~~~~v~~  145 (814)
T 3mkq_A          133 EQTFEGHEHFVMC  145 (814)
T ss_dssp             EEEEECCSSCEEE
T ss_pred             EEEEcCCCCcEEE
Confidence            7778888876543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.57  E-value=2.9e-14  Score=90.39  Aligned_cols=81  Identities=9%  Similarity=0.044  Sum_probs=73.3

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec------cEEEEEeCCCCEEEEeCCCCEEEee
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG------QVLAIGTARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~------~~las~s~d~~v~iwd~~~~~~~~~   76 (89)
                      +...+.+++|+|++. +++++.||.|++||.++++.+..+.+|...|.+      .+|++++.|+.|++||+++++....
T Consensus       183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  261 (313)
T 3odt_A          183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQV  261 (313)
T ss_dssp             CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEE
T ss_pred             CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEE
Confidence            567899999999998 999999999999999999999999999998887      5799999999999999999998888


Q ss_pred             eCCCCCCC
Q psy12376         77 LGKHTKSK   84 (89)
Q Consensus        77 l~~h~~~~   84 (89)
                      +..|...+
T Consensus       262 ~~~~~~~i  269 (313)
T 3odt_A          262 ITLPAISI  269 (313)
T ss_dssp             EECSSSCE
T ss_pred             EeccCceE
Confidence            88887654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.57  E-value=9.5e-15  Score=94.22  Aligned_cols=74  Identities=12%  Similarity=0.119  Sum_probs=65.8

Q ss_pred             CcCCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEeeEe---cCCcceeec-------cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMTSKRVPVL---GKHTNTIVG-------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~~~~~~~~---~~h~~~i~~-------~~las~s~d~~v~iwd~~~   70 (89)
                      +|...|++++|+| ++++|++++.||.|++||+++++.+..+   .+|...|.+       ++|++++.|+.|++||+++
T Consensus       113 ~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  192 (366)
T 3k26_A          113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS  192 (366)
T ss_dssp             SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred             CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence            3677899999999 9999999999999999999999988887   678888877       7999999999999999987


Q ss_pred             CEEEe
Q psy12376         71 SKRVP   75 (89)
Q Consensus        71 ~~~~~   75 (89)
                      ++...
T Consensus       193 ~~~~~  197 (366)
T 3k26_A          193 KRMMN  197 (366)
T ss_dssp             HHHHH
T ss_pred             Ccccc
Confidence            65443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.56  E-value=2.5e-14  Score=94.92  Aligned_cols=72  Identities=13%  Similarity=0.245  Sum_probs=60.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCe-----------EeeEecCCc------------ceeec-------
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSK-----------RVPVLGKHT------------NTIVG-------   51 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~-----------~~~~~~~h~------------~~i~~-------   51 (89)
                      .+.+.|++++|+|+|++||+|+.||.|++||..+++           ....+.+|.            ..|.+       
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            346789999999999999999999999999998776           467788897            66665       


Q ss_pred             --cEEEEEeCCCCEEEEeCCCCEE
Q psy12376         52 --QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus        52 --~~las~s~d~~v~iwd~~~~~~   73 (89)
                        .+|++++.|++|++||+.++..
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~  129 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDK  129 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccC
Confidence              3799999999999999976443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.56  E-value=4.2e-14  Score=91.66  Aligned_cols=83  Identities=12%  Similarity=0.077  Sum_probs=72.7

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCC------------------CCeEeeEecCCcceeec-------cEEEEE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHM------------------TSKRVPVLGKHTNTIVG-------QVLAIG   57 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~------------------~~~~~~~~~~h~~~i~~-------~~las~   57 (89)
                      |...|++++|+|++++|++++.||.|++||++                  .++.+..+.+|...|.+       ++|+++
T Consensus       141 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  220 (372)
T 1k8k_C          141 IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV  220 (372)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred             cCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEE
Confidence            56789999999999999999999999999953                  67788888889888876       699999


Q ss_pred             eCCCCEEEEeCCCCEEEeeeCCCCCCCc
Q psy12376         58 TARGNLTVYNHMTSKRVPVLGKHTKSKP   85 (89)
Q Consensus        58 s~d~~v~iwd~~~~~~~~~l~~h~~~~~   85 (89)
                      +.|+.|++||+++++.+..+..|...+.
T Consensus       221 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~  248 (372)
T 1k8k_C          221 SHDSTVCLADADKKMAVATLASETLPLL  248 (372)
T ss_dssp             ETTTEEEEEEGGGTTEEEEEECSSCCEE
T ss_pred             eCCCEEEEEECCCCceeEEEccCCCCeE
Confidence            9999999999998888888888876543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.56  E-value=1.1e-14  Score=104.00  Aligned_cols=85  Identities=18%  Similarity=0.232  Sum_probs=73.3

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCC--CCeEeeEecCCcceeec---------cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHM--TSKRVPVLGKHTNTIVG---------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~--~~~~~~~~~~h~~~i~~---------~~las~s~d~~v~iwd~~~   70 (89)
                      +|.++|++++|+|+|++|++|+.||.|++||..  +++.+..+.+|..+|.+         ++|++|+.||.|++||+.+
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~   86 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN   86 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred             cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence            578899999999999999999999999999987  45667788899998876         5899999999999999988


Q ss_pred             CE--EEeeeCCCCCCCcC
Q psy12376         71 SK--RVPVLGKHTKSKPS   86 (89)
Q Consensus        71 ~~--~~~~l~~h~~~~~~   86 (89)
                      +.  ....+.+|...+.+
T Consensus        87 ~~~~~~~~~~~h~~~V~~  104 (753)
T 3jro_A           87 GRWSQIAVHAVHSASVNS  104 (753)
T ss_dssp             TEEEEEEEECCCSSCEEE
T ss_pred             CcccccccccCCCCCeEE
Confidence            86  66677788876543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.56  E-value=3.4e-14  Score=91.28  Aligned_cols=84  Identities=12%  Similarity=0.160  Sum_probs=68.2

Q ss_pred             cCCcEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCeE--eeEecCCcceeec--------------------cEEEEEe
Q psy12376          3 LRYYIFLLQTSQV--GQVLAIGTARGNLTVYNHMTSKR--VPVLGKHTNTIVG--------------------QVLAIGT   58 (89)
Q Consensus         3 ~~~~i~~~~~spd--g~~la~g~~~g~v~iwd~~~~~~--~~~~~~h~~~i~~--------------------~~las~s   58 (89)
                      |...|.+++|+|+  |.+||+++.||.|++||.+++..  ...+.+|...|.+                    ++|++|+
T Consensus        98 h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs  177 (297)
T 2pm7_B           98 HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG  177 (297)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEE
T ss_pred             CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEc
Confidence            6678999999998  89999999999999999987532  3456678777664                    2799999


Q ss_pred             CCCCEEEEeCCCCE----EEeeeCCCCCCCcC
Q psy12376         59 ARGNLTVYNHMTSK----RVPVLGKHTKSKPS   86 (89)
Q Consensus        59 ~d~~v~iwd~~~~~----~~~~l~~h~~~~~~   86 (89)
                      .|++|+|||++++.    ....+.+|...+.+
T Consensus       178 ~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~  209 (297)
T 2pm7_B          178 ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD  209 (297)
T ss_dssp             TTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred             CCCcEEEEEEcCCCceEEEEEEecCCCCceEE
Confidence            99999999997654    55678899877543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.56  E-value=6.7e-14  Score=93.77  Aligned_cols=83  Identities=17%  Similarity=0.200  Sum_probs=72.5

Q ss_pred             CcCCc-EEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYY-IFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~-i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|.+. ++++.+  ++++|++|+.||.|++||..+++.+..+.+|...|.+      .+|++|+.|++|++||+++++..
T Consensus       119 ~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~  196 (464)
T 3v7d_B          119 GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCT  196 (464)
T ss_dssp             CCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEE
Confidence            35555 566666  5679999999999999999999999999999999987      69999999999999999999999


Q ss_pred             eeeCCCCCCCcC
Q psy12376         75 PVLGKHTKSKPS   86 (89)
Q Consensus        75 ~~l~~h~~~~~~   86 (89)
                      ..+.+|...+.+
T Consensus       197 ~~~~~h~~~v~~  208 (464)
T 3v7d_B          197 HVFEGHNSTVRC  208 (464)
T ss_dssp             EEECCCSSCEEE
T ss_pred             EEECCCCCccEE
Confidence            999999877643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.56  E-value=6e-14  Score=93.95  Aligned_cols=83  Identities=22%  Similarity=0.266  Sum_probs=72.2

Q ss_pred             CcCCc-EEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          2 NLRYY-IFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         2 ~~~~~-i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      +|.+. +++  ++++|++|++|+.||.|++||..+++.+..+.+|...|.+     +++++|+.|++|++||+.+++...
T Consensus       116 ~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  193 (445)
T 2ovr_B          116 GHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIH  193 (445)
T ss_dssp             CSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEE
Confidence            35554 455  5557899999999999999999999999999999999887     899999999999999999999999


Q ss_pred             eeCCCCCCCcC
Q psy12376         76 VLGKHTKSKPS   86 (89)
Q Consensus        76 ~l~~h~~~~~~   86 (89)
                      .+.+|...+.+
T Consensus       194 ~~~~h~~~v~~  204 (445)
T 2ovr_B          194 TLYGHTSTVRC  204 (445)
T ss_dssp             EECCCSSCEEE
T ss_pred             EECCCCCcEEE
Confidence            99999877643

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.55  E-value=1e-13  Score=88.16  Aligned_cols=82  Identities=20%  Similarity=0.327  Sum_probs=72.1

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----cEEEEEeCCCCEEEEeCCCC-EEEee
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----QVLAIGTARGNLTVYNHMTS-KRVPV   76 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----~~las~s~d~~v~iwd~~~~-~~~~~   76 (89)
                      |...|++++|+|+|++||+|+.||.|++||.++++.+..+.+|...+.+     .++++++.++.+.+|+...+ .....
T Consensus        66 ~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~  145 (318)
T 4ggc_A           66 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVAT  145 (318)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             CCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEE
Confidence            5567999999999999999999999999999999999999999988777     89999999999999999754 55566


Q ss_pred             eCCCCCCC
Q psy12376         77 LGKHTKSK   84 (89)
Q Consensus        77 l~~h~~~~   84 (89)
                      +.+|...+
T Consensus       146 ~~~~~~~~  153 (318)
T 4ggc_A          146 LSGHSQEV  153 (318)
T ss_dssp             EECCSSCE
T ss_pred             EcCccCce
Confidence            77777654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.55  E-value=4e-14  Score=91.72  Aligned_cols=83  Identities=12%  Similarity=0.185  Sum_probs=67.4

Q ss_pred             CcCCcEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCe--EeeEecCCcceeec---------cEEEEEeCCCCEEEEeC
Q psy12376          2 NLRYYIFLLQTSQ--VGQVLAIGTARGNLTVYNHMTSK--RVPVLGKHTNTIVG---------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         2 ~~~~~i~~~~~sp--dg~~la~g~~~g~v~iwd~~~~~--~~~~~~~h~~~i~~---------~~las~s~d~~v~iwd~   68 (89)
                      +|.++|++++|+|  ++++||+|+.|++|++||.++++  ....+.+|...|.+         .+|++|+.|++|++||+
T Consensus        55 gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~  134 (316)
T 3bg1_A           55 GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY  134 (316)
T ss_dssp             CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEE
T ss_pred             CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEec
Confidence            4788999999986  48999999999999999998863  55677889888776         48999999999999999


Q ss_pred             CCCE---EEeeeCCCCCCC
Q psy12376         69 MTSK---RVPVLGKHTKSK   84 (89)
Q Consensus        69 ~~~~---~~~~l~~h~~~~   84 (89)
                      +.+.   ....+.+|...+
T Consensus       135 ~~~~~~~~~~~~~~h~~~v  153 (316)
T 3bg1_A          135 TGEGQWEVKKINNAHTIGC  153 (316)
T ss_dssp             CSSSCEEECCBTTSSSSCB
T ss_pred             CCCCCcceeeeeccccCCc
Confidence            7652   234556776554

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.55  E-value=5.2e-14  Score=92.91  Aligned_cols=81  Identities=14%  Similarity=0.172  Sum_probs=72.0

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      .+....|+|++++||+|+.||.|++||..+++....+.+|...|.+       ++|++|+.|+.|++||+++++....+.
T Consensus        99 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  178 (420)
T 3vl1_A           99 YTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI  178 (420)
T ss_dssp             EEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE
T ss_pred             ceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc
Confidence            3556689999999999999999999999999888888899998887       799999999999999999888888888


Q ss_pred             CCCCCCcC
Q psy12376         79 KHTKSKPS   86 (89)
Q Consensus        79 ~h~~~~~~   86 (89)
                      +|...+.+
T Consensus       179 ~h~~~v~~  186 (420)
T 3vl1_A          179 GHRATVTD  186 (420)
T ss_dssp             CCSSCEEE
T ss_pred             CCCCcEEE
Confidence            89877643

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.55  E-value=1.7e-14  Score=94.10  Aligned_cols=75  Identities=11%  Similarity=0.059  Sum_probs=63.5

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEe-eEecC-Ccceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRV-PVLGK-HTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~-~~~~~-h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      ...+++++|+|+|.+||+|+.||.|++||+++++.+ ..+.. |..+|.+       .+|+++++| .|++||++.++..
T Consensus       170 ~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~  248 (343)
T 3lrv_A          170 DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGT  248 (343)
T ss_dssp             SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTC
T ss_pred             CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcc
Confidence            446899999999999999999999999999998877 67777 9998887       789999955 9999999877655


Q ss_pred             eeeCC
Q psy12376         75 PVLGK   79 (89)
Q Consensus        75 ~~l~~   79 (89)
                      ..+..
T Consensus       249 ~~~~~  253 (343)
T 3lrv_A          249 LAYPT  253 (343)
T ss_dssp             BSSCC
T ss_pred             eeecc
Confidence            44443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.55  E-value=1e-13  Score=92.82  Aligned_cols=83  Identities=14%  Similarity=0.218  Sum_probs=75.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----cEEEEEeCCCCEEEEeCCCCEEEee
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----QVLAIGTARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----~~las~s~d~~v~iwd~~~~~~~~~   76 (89)
                      +|...|.+++|  ++++|++|+.||.|++||.++++.+..+.+|...|.+     +++++|+.|+.|++||+++++....
T Consensus       254 ~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~  331 (435)
T 1p22_A          254 GHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRV  331 (435)
T ss_dssp             CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence            46678999999  7899999999999999999999999999999998887     8999999999999999999999999


Q ss_pred             eCCCCCCCcC
Q psy12376         77 LGKHTKSKPS   86 (89)
Q Consensus        77 l~~h~~~~~~   86 (89)
                      +.+|...+.+
T Consensus       332 ~~~h~~~v~~  341 (435)
T 1p22_A          332 LEGHEELVRC  341 (435)
T ss_dssp             ECCCSSCEEE
T ss_pred             EeCCcCcEEE
Confidence            9999877543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.55  E-value=3.7e-14  Score=91.37  Aligned_cols=79  Identities=10%  Similarity=0.132  Sum_probs=66.8

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec---------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG---------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~---------~~las~s~d~~v~iwd~~~~~   72 (89)
                      .|...|++++|+|++++|++++.||.|++||..+++.+. +..|...|.+         ++|++++.|+.|++||+++++
T Consensus        84 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  162 (368)
T 3mmy_A           84 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN  162 (368)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred             cccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence            367789999999999999999999999999999988665 4457777665         679999999999999999887


Q ss_pred             EEeeeCCCC
Q psy12376         73 RVPVLGKHT   81 (89)
Q Consensus        73 ~~~~l~~h~   81 (89)
                      ....+..|.
T Consensus       163 ~~~~~~~~~  171 (368)
T 3mmy_A          163 PMMVLQLPE  171 (368)
T ss_dssp             CSEEEECSS
T ss_pred             EEEEEecCC
Confidence            766665544

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.54  E-value=3.8e-14  Score=91.08  Aligned_cols=83  Identities=16%  Similarity=0.151  Sum_probs=69.0

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCe---EeeEecCCcceeec-------c-EEEEEeCCCCEEEEeC-C
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSK---RVPVLGKHTNTIVG-------Q-VLAIGTARGNLTVYNH-M   69 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~---~~~~~~~h~~~i~~-------~-~las~s~d~~v~iwd~-~   69 (89)
                      .|.+.|++++|+|++++|++++.||.|++||..+++   ....+.+|...|.+       + +|++|+.|+.|++||+ .
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~   88 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence            477889999999999999999999999999998766   24445578888876       6 8999999999999999 8


Q ss_pred             CCEEEeeeCC--CCCCCc
Q psy12376         70 TSKRVPVLGK--HTKSKP   85 (89)
Q Consensus        70 ~~~~~~~l~~--h~~~~~   85 (89)
                      +++. ..+.+  |...+.
T Consensus        89 ~~~~-~~~~~~~~~~~v~  105 (342)
T 1yfq_A           89 SPSF-QALTNNEANLGIC  105 (342)
T ss_dssp             SSSE-EECBSCCCCSCEE
T ss_pred             CCce-EeccccCCCCceE
Confidence            7765 55666  777654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.54  E-value=6.6e-14  Score=88.72  Aligned_cols=83  Identities=8%  Similarity=-0.021  Sum_probs=71.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCC---
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTS---   71 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~---   71 (89)
                      +|.+.|++++| |++++|++++.||.|++||..+++....+..|...|.+       ++|++++.|+.|++|++...   
T Consensus        16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~   94 (313)
T 3odt_A           16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGE   94 (313)
T ss_dssp             CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTS
T ss_pred             CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCC
Confidence            57889999999 99999999999999999999999888888888888877       79999999999999999643   


Q ss_pred             EEEeeeCCCCCCCc
Q psy12376         72 KRVPVLGKHTKSKP   85 (89)
Q Consensus        72 ~~~~~l~~h~~~~~   85 (89)
                      +....+.+|...+.
T Consensus        95 ~~~~~~~~~~~~i~  108 (313)
T 3odt_A           95 DPLYTLIGHQGNVC  108 (313)
T ss_dssp             CC-CEECCCSSCEE
T ss_pred             CcccchhhcccCEE
Confidence            45566777776654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.54  E-value=8.1e-14  Score=89.54  Aligned_cols=83  Identities=17%  Similarity=0.155  Sum_probs=71.3

Q ss_pred             cCCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC------eEeeEecCCcc---------eeec-------cEEEEEeC
Q psy12376          3 LRYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMTS------KRVPVLGKHTN---------TIVG-------QVLAIGTA   59 (89)
Q Consensus         3 ~~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~~------~~~~~~~~h~~---------~i~~-------~~las~s~   59 (89)
                      +...+.+++|+| ++++|++++.+|.+.+|+.+..      +....+..|..         .|.+       ++|++++.
T Consensus       192 ~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  271 (342)
T 1yfq_A          192 LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS  271 (342)
T ss_dssp             CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET
T ss_pred             CCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC
Confidence            456799999999 9999999999999999999776      66667777754         6666       78999999


Q ss_pred             CCCEEEEeCCCCEEEeeeCCC-CCCCc
Q psy12376         60 RGNLTVYNHMTSKRVPVLGKH-TKSKP   85 (89)
Q Consensus        60 d~~v~iwd~~~~~~~~~l~~h-~~~~~   85 (89)
                      |+.|++||+.+++.+..+.+| ...+.
T Consensus       272 dg~i~vwd~~~~~~~~~~~~~h~~~v~  298 (342)
T 1yfq_A          272 DGIISCWNLQTRKKIKNFAKFNEDSVV  298 (342)
T ss_dssp             TSCEEEEETTTTEEEEECCCCSSSEEE
T ss_pred             CceEEEEcCccHhHhhhhhcccCCCce
Confidence            999999999999999989888 76654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.54  E-value=3.6e-14  Score=94.75  Aligned_cols=77  Identities=17%  Similarity=0.185  Sum_probs=62.5

Q ss_pred             CCcEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          4 RYYIFLLQTSQVGQVLAIGT--ARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~--~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      ...+.++.|+|++..+++++  .||.|+|||..+++.+..+.+|.++|.+       ++||||+.|++|+|||+.+....
T Consensus       320 ~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~  399 (420)
T 4gga_A          320 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA  399 (420)
T ss_dssp             SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred             ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence            34688999999999888765  6899999999999999999999999987       79999999999999999754433


Q ss_pred             eeeCCC
Q psy12376         75 PVLGKH   80 (89)
Q Consensus        75 ~~l~~h   80 (89)
                      .....+
T Consensus       400 ~~~~~~  405 (420)
T 4gga_A          400 RRRERE  405 (420)
T ss_dssp             ------
T ss_pred             chhhhc
Confidence            333333

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.53  E-value=3.5e-13  Score=86.01  Aligned_cols=75  Identities=15%  Similarity=0.134  Sum_probs=68.2

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      +...+++++|+|++++|++++.||.|++||.++++.+..+..|...+.+       ++|++++.|+.|++||+++++...
T Consensus       140 ~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  219 (337)
T 1gxr_A          140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ  219 (337)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEe
Confidence            4567999999999999999999999999999999999999999888876       699999999999999999888776


Q ss_pred             ee
Q psy12376         76 VL   77 (89)
Q Consensus        76 ~l   77 (89)
                      .+
T Consensus       220 ~~  221 (337)
T 1gxr_A          220 QH  221 (337)
T ss_dssp             EE
T ss_pred             ee
Confidence            55

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.53  E-value=1.3e-13  Score=90.22  Aligned_cols=84  Identities=11%  Similarity=0.122  Sum_probs=74.9

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      .|...|.+++|+|++++|++++.||.|++||.++++.+..+.+|...|.+      .++++++.|+.|++||+++++...
T Consensus       245 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  324 (425)
T 1r5m_A          245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLA  324 (425)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeE
Confidence            35678999999999999999999999999999998888888889888876      599999999999999999999888


Q ss_pred             eeCCCCCCCc
Q psy12376         76 VLGKHTKSKP   85 (89)
Q Consensus        76 ~l~~h~~~~~   85 (89)
                      .+..|...+.
T Consensus       325 ~~~~~~~~i~  334 (425)
T 1r5m_A          325 LSIVDGVPIF  334 (425)
T ss_dssp             EEECTTCCEE
T ss_pred             ecccCCccEE
Confidence            8888776543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.52  E-value=2.5e-13  Score=87.05  Aligned_cols=76  Identities=14%  Similarity=0.149  Sum_probs=64.6

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      +|.++|++++|+|+|++|++|+.||.|++||.++++.+..+..+. .+.+      .++++++.|+.|+|||++++....
T Consensus       213 ~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~  291 (340)
T 4aow_A          213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-IINALCFSPNRYWLCAATGPSIKIWDLEGKIIVD  291 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS-CEEEEEECSSSSEEEEEETTEEEEEETTTTEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc-eEEeeecCCCCceeeccCCCEEEEEECCCCeEEE
Confidence            467789999999999999999999999999999999888887653 4443      678888899999999999887766


Q ss_pred             eeC
Q psy12376         76 VLG   78 (89)
Q Consensus        76 ~l~   78 (89)
                      .+.
T Consensus       292 ~~~  294 (340)
T 4aow_A          292 ELK  294 (340)
T ss_dssp             EEC
T ss_pred             ecc
Confidence            554

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.52  E-value=1.1e-13  Score=90.82  Aligned_cols=80  Identities=15%  Similarity=0.272  Sum_probs=68.0

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------c-EEEEEeCCCCEEEEeCCC----C
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------Q-VLAIGTARGNLTVYNHMT----S   71 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~-~las~s~d~~v~iwd~~~----~   71 (89)
                      ...+.+++|+|++++|++|+.||.|++||+ +++.+..+.+|...|.+       + +|++|+.|+.|++||+++    +
T Consensus       163 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  241 (383)
T 3ei3_B          163 DYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN  241 (383)
T ss_dssp             SCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT
T ss_pred             CCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc
Confidence            467999999999999999999999999999 46778888899998887       4 899999999999999986    5


Q ss_pred             EEEeeeCCCCCCCc
Q psy12376         72 KRVPVLGKHTKSKP   85 (89)
Q Consensus        72 ~~~~~l~~h~~~~~   85 (89)
                      .....+ +|...+.
T Consensus       242 ~~~~~~-~~~~~v~  254 (383)
T 3ei3_B          242 SYIAEM-PHEKPVN  254 (383)
T ss_dssp             CEEEEE-ECSSCEE
T ss_pred             ceEEEe-cCCCceE
Confidence            566655 5665543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.52  E-value=5e-14  Score=92.59  Aligned_cols=71  Identities=17%  Similarity=0.281  Sum_probs=63.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCC----CeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMT----SKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~----~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~   69 (89)
                      .|...|++++|+|++++||+++.||.|++||..+    .+.+..+.+|...|.+        ++|++++.|+.|++||+.
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  144 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN  144 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence            4667899999999999999999999999999987    3577888899988776        689999999999999998


Q ss_pred             CCE
Q psy12376         70 TSK   72 (89)
Q Consensus        70 ~~~   72 (89)
                      +++
T Consensus       145 ~~~  147 (416)
T 2pm9_A          145 KCT  147 (416)
T ss_dssp             TTS
T ss_pred             CCc
Confidence            765

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.52  E-value=1.7e-13  Score=93.01  Aligned_cols=77  Identities=16%  Similarity=0.173  Sum_probs=65.0

Q ss_pred             cCCcEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          3 LRYYIFLLQTSQV-GQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         3 ~~~~i~~~~~spd-g~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      |.+.|.+++|+|+ +.+||+++.||.|++||++++..+....+|...+.+       ++|++|+.|++|++||++ ++..
T Consensus       148 h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~  226 (434)
T 2oit_A          148 AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK  226 (434)
T ss_dssp             GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE
T ss_pred             CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc
Confidence            6778999999998 889999999999999999988766666678888776       799999999999999998 5544


Q ss_pred             eeeCCC
Q psy12376         75 PVLGKH   80 (89)
Q Consensus        75 ~~l~~h   80 (89)
                      ..+..|
T Consensus       227 ~~~~~~  232 (434)
T 2oit_A          227 KVIPCP  232 (434)
T ss_dssp             EEECCC
T ss_pred             ccccCC
Confidence            545444

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.52  E-value=1e-13  Score=91.71  Aligned_cols=84  Identities=7%  Similarity=0.054  Sum_probs=70.1

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCC----cEEEEeCCCCeE----eeEecCCcceeec-------cEEEEEeCCCCEEEEe
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARG----NLTVYNHMTSKR----VPVLGKHTNTIVG-------QVLAIGTARGNLTVYN   67 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g----~v~iwd~~~~~~----~~~~~~h~~~i~~-------~~las~s~d~~v~iwd   67 (89)
                      |...+.+++|+|||+++++++.++    .+.+|+...+..    ...+.+|...|.+       ++||+|+.|++|+|||
T Consensus       218 ~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd  297 (365)
T 4h5i_A          218 KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVK  297 (365)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEE
Confidence            556799999999999999998887    688899876543    3456788888876       8999999999999999


Q ss_pred             CCCCEEEee-eCCCCCCCcC
Q psy12376         68 HMTSKRVPV-LGKHTKSKPS   86 (89)
Q Consensus        68 ~~~~~~~~~-l~~h~~~~~~   86 (89)
                      +++++.+.. +.+|...+.+
T Consensus       298 ~~~~~~~~~~~~gH~~~V~~  317 (365)
T 4h5i_A          298 LKDLSMSKIFKQAHSFAITE  317 (365)
T ss_dssp             TTTTEEEEEETTSSSSCEEE
T ss_pred             CCCCcEEEEecCcccCCEEE
Confidence            999998876 5789987654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.52  E-value=1.2e-13  Score=100.75  Aligned_cols=80  Identities=16%  Similarity=0.160  Sum_probs=67.1

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      +|++.|++++|+|+|++||+|+.||.|++|+..+++....+ .|...|.+      ++|++++.|++|+|||+++++.+.
T Consensus        15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~   93 (902)
T 2oaj_A           15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLT   93 (902)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEE
T ss_pred             CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEE
Confidence            57788999999999999999999999999999887765544 46777766      679999999999999999888777


Q ss_pred             eeCCCCCC
Q psy12376         76 VLGKHTKS   83 (89)
Q Consensus        76 ~l~~h~~~   83 (89)
                      .+. |...
T Consensus        94 ~~~-~~~~  100 (902)
T 2oaj_A           94 TVF-VPGK  100 (902)
T ss_dssp             EEE-CSSC
T ss_pred             EEc-CCCC
Confidence            664 4433

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.51  E-value=1.7e-13  Score=89.50  Aligned_cols=77  Identities=17%  Similarity=0.195  Sum_probs=65.3

Q ss_pred             CcCCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEeeEe-------------cCCcceeec--------cEEEEEeC
Q psy12376          2 NLRYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMTSKRVPVL-------------GKHTNTIVG--------QVLAIGTA   59 (89)
Q Consensus         2 ~~~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~~~~~~~~-------------~~h~~~i~~--------~~las~s~   59 (89)
                      .|.+.|++++|+| ++++||+|+.||.|++||..+++....+             .+|...|.+        .+|++++.
T Consensus        41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  120 (408)
T 4a11_B           41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF  120 (408)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred             ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence            4778999999999 9999999999999999999887654433             258887776        58999999


Q ss_pred             CCCEEEEeCCCCEEEeeeC
Q psy12376         60 RGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus        60 d~~v~iwd~~~~~~~~~l~   78 (89)
                      |+.|++||+.+++....+.
T Consensus       121 d~~i~iwd~~~~~~~~~~~  139 (408)
T 4a11_B          121 DKTLKVWDTNTLQTADVFN  139 (408)
T ss_dssp             TSEEEEEETTTTEEEEEEE
T ss_pred             CCeEEEeeCCCCccceecc
Confidence            9999999999888776654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.51  E-value=7.7e-14  Score=93.63  Aligned_cols=81  Identities=10%  Similarity=0.069  Sum_probs=67.2

Q ss_pred             CcCCcEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEeeE---ecCCcceeec-------cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQVGQ-VLAIGTARGNLTVYNHMTSKRVPV---LGKHTNTIVG-------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~-~la~g~~~g~v~iwd~~~~~~~~~---~~~h~~~i~~-------~~las~s~d~~v~iwd~~~   70 (89)
                      .|.+.|++++|+|+++ +|++|+.||.|++||+++++....   ..+|...|.+       ++|++++.|+.|+|||+.+
T Consensus       248 ~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~  327 (435)
T 4e54_B          248 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ  327 (435)
T ss_dssp             CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS
T ss_pred             cccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC
Confidence            4677899999999986 788999999999999988664433   3568888876       7999999999999999998


Q ss_pred             CEEEeeeCCCCC
Q psy12376         71 SKRVPVLGKHTK   82 (89)
Q Consensus        71 ~~~~~~l~~h~~   82 (89)
                      +.....+..|..
T Consensus       328 ~~~~~~~~~~~~  339 (435)
T 4e54_B          328 WDCPLGLIPHPH  339 (435)
T ss_dssp             SSSEEEECCCCC
T ss_pred             CccceEEecccc
Confidence            877776666653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.51  E-value=4e-13  Score=88.10  Aligned_cols=78  Identities=17%  Similarity=0.275  Sum_probs=65.2

Q ss_pred             CcCCcEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEeeEec--CCcceeec--------cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQVG-QVLAIGTARGNLTVYNHMTSKRVPVLG--KHTNTIVG--------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg-~~la~g~~~g~v~iwd~~~~~~~~~~~--~h~~~i~~--------~~las~s~d~~v~iwd~~~   70 (89)
                      +|.+.|++++|+|+| ++||+|+.||.|++||..+++....+.  +|...|.+        ++|++++.|+.|++||+++
T Consensus        71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (383)
T 3ei3_B           71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG  150 (383)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS
T ss_pred             CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC
Confidence            467889999999999 899999999999999999877766665  68888876        6899999999999999986


Q ss_pred             CEEEeeeCCC
Q psy12376         71 SKRVPVLGKH   80 (89)
Q Consensus        71 ~~~~~~l~~h   80 (89)
                      ... ..+..|
T Consensus       151 ~~~-~~~~~~  159 (383)
T 3ei3_B          151 SVI-QVFAKT  159 (383)
T ss_dssp             CEE-EEEECC
T ss_pred             Cce-EEEecc
Confidence            443 444333

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.51  E-value=3.2e-13  Score=90.39  Aligned_cols=82  Identities=21%  Similarity=0.246  Sum_probs=69.9

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----cEEEEEeCCCCEEEEeCCCCEEEee
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----QVLAIGTARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----~~las~s~d~~v~iwd~~~~~~~~~   76 (89)
                      +|...|++++|+  +.+|++|+.||.|++||..+++.+..+.+|...|.+     +++++|+.|++|++||+.+++....
T Consensus       157 ~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~  234 (445)
T 2ovr_B          157 GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV  234 (445)
T ss_dssp             CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEE
T ss_pred             CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEE
Confidence            466788999997  568999999999999999999888888889888877     7899999999999999988888888


Q ss_pred             eCCCCCCCc
Q psy12376         77 LGKHTKSKP   85 (89)
Q Consensus        77 l~~h~~~~~   85 (89)
                      +.+|...+.
T Consensus       235 ~~~~~~~v~  243 (445)
T 2ovr_B          235 LMGHVAAVR  243 (445)
T ss_dssp             EECCSSCEE
T ss_pred             EcCCcccEE
Confidence            888876654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.51  E-value=1.2e-13  Score=92.98  Aligned_cols=76  Identities=9%  Similarity=0.047  Sum_probs=67.4

Q ss_pred             cCCcEEEEEEccC---CCEEEEEeCCCcEEEEeCCCCeEeeE-ecCCcceeec------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          3 LRYYIFLLQTSQV---GQVLAIGTARGNLTVYNHMTSKRVPV-LGKHTNTIVG------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         3 ~~~~i~~~~~spd---g~~la~g~~~g~v~iwd~~~~~~~~~-~~~h~~~i~~------~~las~s~d~~v~iwd~~~~~   72 (89)
                      |...|++++|+|+   +++|++|+.|+.|++||+++++.+.. +.+|...|.+      ++|++++.|+.|+|||+++++
T Consensus       194 h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~  273 (450)
T 2vdu_B          194 HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGK  273 (450)
T ss_dssp             CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCC
T ss_pred             ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCc
Confidence            5678999999999   99999999999999999998887776 5689887776      699999999999999999988


Q ss_pred             EEeeeC
Q psy12376         73 RVPVLG   78 (89)
Q Consensus        73 ~~~~l~   78 (89)
                      .+..+.
T Consensus       274 ~~~~~~  279 (450)
T 2vdu_B          274 NLSTFD  279 (450)
T ss_dssp             EEEEEE
T ss_pred             Eeeeec
Confidence            777664

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.51  E-value=1.4e-13  Score=96.93  Aligned_cols=81  Identities=12%  Similarity=0.195  Sum_probs=64.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcce-----eec-------cEEEEEeCCCCEEEEeCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNT-----IVG-------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~-----i~~-------~~las~s~d~~v~iwd~~   69 (89)
                      .+.+.|++++|||||+.||+++.||.|++||..+  .+..+. |...     +.+       ++||+|+.||+|+|||+.
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            3456799999999999999999999999999544  556666 6653     555       899999999999999998


Q ss_pred             CCE-------EEeee----CCCCCCCc
Q psy12376         70 TSK-------RVPVL----GKHTKSKP   85 (89)
Q Consensus        70 ~~~-------~~~~l----~~h~~~~~   85 (89)
                      ++.       .+..+    .+|...+.
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~  186 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVT  186 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEE
T ss_pred             CCccccccceeeeeeecccccccccEE
Confidence            774       34554    56766554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.51  E-value=2.2e-13  Score=95.96  Aligned_cols=80  Identities=6%  Similarity=0.122  Sum_probs=65.5

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCe-------EeeEe----cCCcceeec------cEEEEEeCCCCEEEEeC
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSK-------RVPVL----GKHTNTIVG------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~-------~~~~~----~~h~~~i~~------~~las~s~d~~v~iwd~   68 (89)
                      .+.+++|||||++||+|+.||+|++||+.+++       .+..+    .+|...|.+      . +++++.|++|++||+
T Consensus       131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~  209 (588)
T 2j04_A          131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTV  209 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECC
T ss_pred             cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEEC
Confidence            49999999999999999999999999998875       25565    677788887      7 999999999999999


Q ss_pred             CCCEE---Eeee-CCCCCCCcC
Q psy12376         69 MTSKR---VPVL-GKHTKSKPS   86 (89)
Q Consensus        69 ~~~~~---~~~l-~~h~~~~~~   86 (89)
                      .++..   ...+ .+|...+.+
T Consensus       210 ~~~~~~~~~~tL~~~h~~~V~s  231 (588)
T 2j04_A          210 SASSHQPVSRMIQNASRRKITD  231 (588)
T ss_dssp             CSSSSCCCEEEEECCCSSCCCC
T ss_pred             CCCccccceeeecccccCcEEE
Confidence            87663   2345 477766654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.51  E-value=3.5e-13  Score=89.39  Aligned_cols=77  Identities=18%  Similarity=0.190  Sum_probs=68.1

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEe--CCCCEEEEeCCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGT--ARGNLTVYNHMTS   71 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s--~d~~v~iwd~~~~   71 (89)
                      +|...|.+++|+|++++|++|+.||.|++||.++++.+..+..|...|.+        .++++++  .|+.|++||+.++
T Consensus       215 ~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~  294 (401)
T 4aez_A          215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG  294 (401)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred             CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence            46778999999999999999999999999999999888888889888766        6788876  8999999999988


Q ss_pred             EEEeeeC
Q psy12376         72 KRVPVLG   78 (89)
Q Consensus        72 ~~~~~l~   78 (89)
                      +....+.
T Consensus       295 ~~~~~~~  301 (401)
T 4aez_A          295 ARVNTVD  301 (401)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEe
Confidence            8877664

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.50  E-value=2.8e-13  Score=87.65  Aligned_cols=84  Identities=12%  Similarity=0.264  Sum_probs=69.2

Q ss_pred             CcCCcEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCe--EeeEecCCcceeec---------cEEEEEeCCCCEEEEeC
Q psy12376          2 NLRYYIFLLQTSQV--GQVLAIGTARGNLTVYNHMTSK--RVPVLGKHTNTIVG---------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         2 ~~~~~i~~~~~spd--g~~la~g~~~g~v~iwd~~~~~--~~~~~~~h~~~i~~---------~~las~s~d~~v~iwd~   68 (89)
                      .|...|++++|+|+  +++|++++.||.|++||..+++  .+..+..|...|.+         .+|++++.|+.|++||+
T Consensus        53 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~  132 (379)
T 3jrp_A           53 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF  132 (379)
T ss_dssp             CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred             CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEec
Confidence            46788999999987  9999999999999999999887  66777888888876         47999999999999999


Q ss_pred             CCCE--EEeeeCCCCCCCc
Q psy12376         69 MTSK--RVPVLGKHTKSKP   85 (89)
Q Consensus        69 ~~~~--~~~~l~~h~~~~~   85 (89)
                      +.+.  ....+..|...+.
T Consensus       133 ~~~~~~~~~~~~~~~~~v~  151 (379)
T 3jrp_A          133 KENGTTSPIIIDAHAIGVN  151 (379)
T ss_dssp             CTTSCCCEEEEECCTTCEE
T ss_pred             CCCCceeeEEecCCCCceE
Confidence            8762  3334556665543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.50  E-value=1.5e-13  Score=90.27  Aligned_cols=84  Identities=8%  Similarity=0.160  Sum_probs=72.6

Q ss_pred             cCCcEEEEEEccCC-CEEEEEeCCC---cEEEEeCCCC-eEeeEec-CCcceeec--------cEEEEEeCCCCEEEEeC
Q psy12376          3 LRYYIFLLQTSQVG-QVLAIGTARG---NLTVYNHMTS-KRVPVLG-KHTNTIVG--------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         3 ~~~~i~~~~~spdg-~~la~g~~~g---~v~iwd~~~~-~~~~~~~-~h~~~i~~--------~~las~s~d~~v~iwd~   68 (89)
                      |...+.+++|+|++ .+|++++.++   .|++||.+++ +.+..+. +|...|.+        ++|++++.|+.|++||+
T Consensus       213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~  292 (416)
T 2pm9_A          213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP  292 (416)
T ss_dssp             CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred             cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence            36779999999997 6999999999   9999999986 5667777 88887766        68999999999999999


Q ss_pred             CCCEEEeeeCCCCCCCcC
Q psy12376         69 MTSKRVPVLGKHTKSKPS   86 (89)
Q Consensus        69 ~~~~~~~~l~~h~~~~~~   86 (89)
                      ++++.+..+..|...+.+
T Consensus       293 ~~~~~~~~~~~~~~~v~~  310 (416)
T 2pm9_A          293 ESAEQLSQFPARGNWCFK  310 (416)
T ss_dssp             SSCCEEEEEECSSSCCCC
T ss_pred             CCCccceeecCCCCceEE
Confidence            999998888888876643

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.49  E-value=1.6e-13  Score=95.34  Aligned_cols=83  Identities=11%  Similarity=0.042  Sum_probs=67.4

Q ss_pred             CCcEEEEEEccC------CCEEEEEeCCCcEEEEeCCCCeE-----------eeEecCCcceeec------cEEEEEeCC
Q psy12376          4 RYYIFLLQTSQV------GQVLAIGTARGNLTVYNHMTSKR-----------VPVLGKHTNTIVG------QVLAIGTAR   60 (89)
Q Consensus         4 ~~~i~~~~~spd------g~~la~g~~~g~v~iwd~~~~~~-----------~~~~~~h~~~i~~------~~las~s~d   60 (89)
                      .+.|..++|+|+      +.+||+++.||+|++||+.+++.           ...+.+|...|.+      .+|++|+.|
T Consensus       207 ~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~D  286 (524)
T 2j04_B          207 FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKN  286 (524)
T ss_dssp             CCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETT
T ss_pred             CCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCC
Confidence            467999999997      57999999999999999986642           2356788888877      689999999


Q ss_pred             CCEEEEeCCCCE-EEeeeCCCCCCCcC
Q psy12376         61 GNLTVYNHMTSK-RVPVLGKHTKSKPS   86 (89)
Q Consensus        61 ~~v~iwd~~~~~-~~~~l~~h~~~~~~   86 (89)
                      |+|++||++++. ....+.+|...+.+
T Consensus       287 gtV~lWD~~~~~~~~~~~~~H~~~V~s  313 (524)
T 2j04_B          287 GFVAEFDLTDPEVPSFYDQVHDSYILS  313 (524)
T ss_dssp             SEEEEEETTBCSSCSEEEECSSSCEEE
T ss_pred             CEEEEEECCCCCCceEEeecccccEEE
Confidence            999999998653 34457788887654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.49  E-value=7.1e-13  Score=90.68  Aligned_cols=84  Identities=7%  Similarity=-0.020  Sum_probs=74.4

Q ss_pred             CcCCcEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEeeEecCCcc---eeec--------cEEEEEeCCCCEEEEeCC
Q psy12376          2 NLRYYIFLLQTSQVGQ-VLAIGTARGNLTVYNHMTSKRVPVLGKHTN---TIVG--------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~-~la~g~~~g~v~iwd~~~~~~~~~~~~h~~---~i~~--------~~las~s~d~~v~iwd~~   69 (89)
                      +|.+.|++++|+|+++ .|++++.||.|++||..+++.+..+.+|..   .|.+        ++|++++.|+.|++||++
T Consensus       158 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~  237 (615)
T 1pgu_A          158 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK  237 (615)
T ss_dssp             SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred             cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence            4667899999999998 899999999999999999999999999988   7876        489999999999999999


Q ss_pred             CCEEEeee-C---CCCCCCc
Q psy12376         70 TSKRVPVL-G---KHTKSKP   85 (89)
Q Consensus        70 ~~~~~~~l-~---~h~~~~~   85 (89)
                      +++....+ .   .|...+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~v~  257 (615)
T 1pgu_A          238 SGEFLKYIEDDQEPVQGGIF  257 (615)
T ss_dssp             TCCEEEECCBTTBCCCSCEE
T ss_pred             CCCEeEEecccccccCCceE
Confidence            99888877 5   7776654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.49  E-value=4.7e-13  Score=89.05  Aligned_cols=81  Identities=14%  Similarity=0.246  Sum_probs=68.7

Q ss_pred             CCcEEEEE--EccCCCEEEEEeCCCcEEEEeCCCCeEeeEecC--Ccceeec-------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          4 RYYIFLLQ--TSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGK--HTNTIVG-------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         4 ~~~i~~~~--~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~--h~~~i~~-------~~las~s~d~~v~iwd~~~~~   72 (89)
                      ...+.++.  ++|++.+|++|+.||.|++||+++++.+..+.+  |...|.+       ++|++|+.|+.|++||+++++
T Consensus       168 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  247 (437)
T 3gre_A          168 NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV  247 (437)
T ss_dssp             CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred             ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc
Confidence            34566666  678999999999999999999999999988887  7888877       789999999999999999998


Q ss_pred             EEeeeC-CCCCCC
Q psy12376         73 RVPVLG-KHTKSK   84 (89)
Q Consensus        73 ~~~~l~-~h~~~~   84 (89)
                      .+..+. .|...+
T Consensus       248 ~~~~~~~~~~~~v  260 (437)
T 3gre_A          248 LIRSWSFGDHAPI  260 (437)
T ss_dssp             EEEEEBCTTCEEE
T ss_pred             EEEEEecCCCCce
Confidence            888764 555443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.48  E-value=1.8e-13  Score=88.08  Aligned_cols=81  Identities=19%  Similarity=0.196  Sum_probs=68.8

Q ss_pred             CcCCcEEEEEEccC---CCEEEEEeCCCcEEEEeCCCCe-EeeEecCCcceeec-------------cEEEEEeCCCCEE
Q psy12376          2 NLRYYIFLLQTSQV---GQVLAIGTARGNLTVYNHMTSK-RVPVLGKHTNTIVG-------------QVLAIGTARGNLT   64 (89)
Q Consensus         2 ~~~~~i~~~~~spd---g~~la~g~~~g~v~iwd~~~~~-~~~~~~~h~~~i~~-------------~~las~s~d~~v~   64 (89)
                      +|..+|++++|+|+   |++|++|+.||.|++||..+++ .+..+.+|...|.+             ++|++++.|+.|+
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~  142 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK  142 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence            35678999999999   7999999999999999999887 77888899887765             4999999999999


Q ss_pred             EEeCCCCE-EEeeeCCCCC
Q psy12376         65 VYNHMTSK-RVPVLGKHTK   82 (89)
Q Consensus        65 iwd~~~~~-~~~~l~~h~~   82 (89)
                      +||++++. ....+..|..
T Consensus       143 vwd~~~~~~~~~~~~~~~~  161 (357)
T 3i2n_A          143 VWDPRQKDDPVANMEPVQG  161 (357)
T ss_dssp             EECTTSCSSCSEEECCCTT
T ss_pred             EEeCCCCCCcceeccccCC
Confidence            99998765 5566655544

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.48  E-value=2.9e-14  Score=96.74  Aligned_cols=82  Identities=15%  Similarity=0.152  Sum_probs=65.4

Q ss_pred             cCCcEEEEEEccCCCEEE----EEeCCCcEEEEeCCCC--------e---EeeEecCCcceeec--------cEEEEEeC
Q psy12376          3 LRYYIFLLQTSQVGQVLA----IGTARGNLTVYNHMTS--------K---RVPVLGKHTNTIVG--------QVLAIGTA   59 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la----~g~~~g~v~iwd~~~~--------~---~~~~~~~h~~~i~~--------~~las~s~   59 (89)
                      +...|++++|+|+|++||    +|+.|+.|++||+.++        +   .+..+.+|...|.+        ++|++++.
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~  170 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA  170 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence            345699999999999999    7888999999998654        1   24556678888876        68999999


Q ss_pred             CCCEEEEeCCCCEEEeeeCCCCCCC
Q psy12376         60 RGNLTVYNHMTSKRVPVLGKHTKSK   84 (89)
Q Consensus        60 d~~v~iwd~~~~~~~~~l~~h~~~~   84 (89)
                      |++|++||++++.......+|...+
T Consensus       171 Dg~v~iwD~~~~~~~~~~~~~~~~v  195 (434)
T 2oit_A          171 DGSIAVLQVTETVKVCATLPSTVAV  195 (434)
T ss_dssp             TSCEEEEEESSSEEEEEEECGGGCE
T ss_pred             CCeEEEEEcCCCcceeeccCCCCce
Confidence            9999999999887665555565544

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.48  E-value=3.8e-13  Score=90.10  Aligned_cols=79  Identities=14%  Similarity=0.193  Sum_probs=61.2

Q ss_pred             cEEEEEEccCCCEE------------EEEeCCCcEEEEeCCCCeEeeEe-----cCCcceeec-----cEEEEEeCCCCE
Q psy12376          6 YIFLLQTSQVGQVL------------AIGTARGNLTVYNHMTSKRVPVL-----GKHTNTIVG-----QVLAIGTARGNL   63 (89)
Q Consensus         6 ~i~~~~~spdg~~l------------a~g~~~g~v~iwd~~~~~~~~~~-----~~h~~~i~~-----~~las~s~d~~v   63 (89)
                      .+.+++|||||+++            ++|+.|++|++||..+++.+..+     .+|...+.+     .++|+++.|++|
T Consensus       228 ~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTI  307 (356)
T 2w18_A          228 SVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTI  307 (356)
T ss_dssp             CCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCE
T ss_pred             eeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcE
Confidence            46788999999986            66888999999999999877654     366655443     479999999999


Q ss_pred             EEEeCCCCEEEeeeCCCCCCC
Q psy12376         64 TVYNHMTSKRVPVLGKHTKSK   84 (89)
Q Consensus        64 ~iwd~~~~~~~~~l~~h~~~~   84 (89)
                      +|||+.+++..+.+.+|...+
T Consensus       308 kIWDl~tGk~l~tL~gH~~~v  328 (356)
T 2w18_A          308 AIWDLLLGQCTALLPPVSDQH  328 (356)
T ss_dssp             EEEETTTCSEEEEECCC--CC
T ss_pred             EEEECCCCcEEEEecCCCCCe
Confidence            999999999999999887653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.48  E-value=2.1e-13  Score=89.26  Aligned_cols=76  Identities=21%  Similarity=0.311  Sum_probs=68.1

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecC---C---cceeec-------cEEEEEeCC---CCEEEE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGK---H---TNTIVG-------QVLAIGTAR---GNLTVY   66 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~---h---~~~i~~-------~~las~s~d---~~v~iw   66 (89)
                      +...+++++|+|++ +|++++.||.|++||+++++.+..+..   |   ...|.+       ++|++++.|   +.|++|
T Consensus       185 ~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~  263 (397)
T 1sq9_A          185 PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY  263 (397)
T ss_dssp             SCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred             CCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEE
Confidence            45679999999999 999999999999999999999888888   8   888776       799999999   999999


Q ss_pred             eCCCCEEEeeeCC
Q psy12376         67 NHMTSKRVPVLGK   79 (89)
Q Consensus        67 d~~~~~~~~~l~~   79 (89)
                      |+++++....+..
T Consensus       264 d~~~~~~~~~~~~  276 (397)
T 1sq9_A          264 ETEFGERIGSLSV  276 (397)
T ss_dssp             ETTTCCEEEEECB
T ss_pred             ECCCCcccceecc
Confidence            9998888888877

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.47  E-value=4e-13  Score=90.11  Aligned_cols=84  Identities=11%  Similarity=0.120  Sum_probs=70.2

Q ss_pred             CcCCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC---eEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCC
Q psy12376          2 NLRYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMTS---KRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         2 ~~~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~~---~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~   69 (89)
                      .|...|.+++|+| ++.+|++++.||.|++||++++   +.+..+..|...|.+        .+|++|+.|+.|++||++
T Consensus       229 ~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~  308 (430)
T 2xyi_A          229 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR  308 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCC
Confidence            4667899999999 6789999999999999999976   456677789888877        379999999999999998


Q ss_pred             C-CEEEeeeCCCCCCCc
Q psy12376         70 T-SKRVPVLGKHTKSKP   85 (89)
Q Consensus        70 ~-~~~~~~l~~h~~~~~   85 (89)
                      . +..+..+..|...+.
T Consensus       309 ~~~~~~~~~~~h~~~v~  325 (430)
T 2xyi_A          309 NLKLKLHSFESHKDEIF  325 (430)
T ss_dssp             CTTSCSEEEECCSSCEE
T ss_pred             CCCCCeEEeecCCCCEE
Confidence            6 556677777876654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.46  E-value=3.2e-13  Score=89.62  Aligned_cols=80  Identities=10%  Similarity=0.139  Sum_probs=67.0

Q ss_pred             CcCCcEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeE----eeEecCCcc------------eeec-------cEEEEE
Q psy12376          2 NLRYYIFLLQTSQVG-QVLAIGTARGNLTVYNHMTSKR----VPVLGKHTN------------TIVG-------QVLAIG   57 (89)
Q Consensus         2 ~~~~~i~~~~~spdg-~~la~g~~~g~v~iwd~~~~~~----~~~~~~h~~------------~i~~-------~~las~   57 (89)
                      .|...|++++|+|++ ++|++|+.||.|++||+++++.    +..+..|..            .|.+       ++|+++
T Consensus       224 ~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  303 (447)
T 3dw8_B          224 ELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTR  303 (447)
T ss_dssp             GCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEE
T ss_pred             ccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEe
Confidence            356779999999999 9999999999999999998876    677888775            6665       789999


Q ss_pred             eCCCCEEEEeCCC-CEEEeeeCCCCC
Q psy12376         58 TARGNLTVYNHMT-SKRVPVLGKHTK   82 (89)
Q Consensus        58 s~d~~v~iwd~~~-~~~~~~l~~h~~   82 (89)
                      +. +.|+|||++. ++.+..+..|..
T Consensus       304 ~~-~~v~iwd~~~~~~~~~~~~~~~~  328 (447)
T 3dw8_B          304 DY-LSVKVWDLNMENRPVETYQVHEY  328 (447)
T ss_dssp             ES-SEEEEEETTCCSSCSCCEESCGG
T ss_pred             eC-CeEEEEeCCCCccccceeecccc
Confidence            98 9999999986 777777777754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.45  E-value=1.3e-12  Score=84.05  Aligned_cols=73  Identities=14%  Similarity=0.142  Sum_probs=66.2

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMT-SKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~-~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      .+.+++|+|++++|++++.||.|.+||.++ ++.+..+..|...|.+       ++|++++.|+.|++||+++++....+
T Consensus       177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  256 (369)
T 3zwl_B          177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY  256 (369)
T ss_dssp             CEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee
Confidence            799999999999999999999999999998 7888888889888876       78999999999999999988777665


Q ss_pred             C
Q psy12376         78 G   78 (89)
Q Consensus        78 ~   78 (89)
                      .
T Consensus       257 ~  257 (369)
T 3zwl_B          257 E  257 (369)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.45  E-value=3.6e-13  Score=90.61  Aligned_cols=84  Identities=8%  Similarity=0.013  Sum_probs=70.1

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEee----EecCCcceeec-----c-----EEEEEeCCCCEEEEeC
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVP----VLGKHTNTIVG-----Q-----VLAIGTARGNLTVYNH   68 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~----~~~~h~~~i~~-----~-----~las~s~d~~v~iwd~   68 (89)
                      +...+++++|+|+|++|++|+.+|.+.+|++.+++...    .+.+|...|.+     .     +|++|+.|+.|++||+
T Consensus       148 ~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~  227 (450)
T 2vdu_B          148 FSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY  227 (450)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE
T ss_pred             CCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC
Confidence            45679999999999999999999999999998876543    56678887776     4     8999999999999999


Q ss_pred             CCCEEEee-eCCCCCCCcC
Q psy12376         69 MTSKRVPV-LGKHTKSKPS   86 (89)
Q Consensus        69 ~~~~~~~~-l~~h~~~~~~   86 (89)
                      .++..... +.+|...+.+
T Consensus       228 ~~~~~~~~~~~~h~~~v~~  246 (450)
T 2vdu_B          228 PQCFIVDKWLFGHKHFVSS  246 (450)
T ss_dssp             SCTTCEEEECCCCSSCEEE
T ss_pred             CCCceeeeeecCCCCceEE
Confidence            88776665 6688876543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.45  E-value=7.1e-13  Score=88.90  Aligned_cols=84  Identities=17%  Similarity=0.245  Sum_probs=69.3

Q ss_pred             CcCCcEEEEEEccCCC-EEEEEeCCCcEEEEeCCC-CeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeCCC-
Q psy12376          2 NLRYYIFLLQTSQVGQ-VLAIGTARGNLTVYNHMT-SKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMT-   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~-~la~g~~~g~v~iwd~~~-~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~-   70 (89)
                      .|...|++++|+|+++ +||+|+.||.|++||.++ ++.+..+..|...|.+        .+|++++.|+.|+|||+.. 
T Consensus       275 ~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~  354 (430)
T 2xyi_A          275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  354 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred             cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence            3567799999999997 789999999999999987 5567788889888876        4799999999999999975 


Q ss_pred             -------------CEEEeeeCCCCCCCc
Q psy12376         71 -------------SKRVPVLGKHTKSKP   85 (89)
Q Consensus        71 -------------~~~~~~l~~h~~~~~   85 (89)
                                   .+....+.+|...+.
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~  382 (430)
T 2xyi_A          355 GEEQSTEDAEDGPPELLFIHGGHTAKIS  382 (430)
T ss_dssp             TCCCCHHHHHHCCTTEEEECCCCSSCEE
T ss_pred             ccccCccccccCCcceEEEcCCCCCCce
Confidence                         255566677776543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.44  E-value=2.7e-13  Score=87.23  Aligned_cols=83  Identities=12%  Similarity=0.173  Sum_probs=67.5

Q ss_pred             cCCcEEEEEEcc---CCCEEEEEeCCCcEEEEeCCCCeEeeEec-----CCcceeec-------c-EEEEEeCCCCEEEE
Q psy12376          3 LRYYIFLLQTSQ---VGQVLAIGTARGNLTVYNHMTSKRVPVLG-----KHTNTIVG-------Q-VLAIGTARGNLTVY   66 (89)
Q Consensus         3 ~~~~i~~~~~sp---dg~~la~g~~~g~v~iwd~~~~~~~~~~~-----~h~~~i~~-------~-~las~s~d~~v~iw   66 (89)
                      +...+.+++|+|   ++.+|++++.||.|++||.++++....+.     +|...|.+       + +|++++.|+.|++|
T Consensus       208 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw  287 (357)
T 3i2n_A          208 IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW  287 (357)
T ss_dssp             CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred             CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEe
Confidence            567899999999   99999999999999999998876554443     88888876       4 89999999999999


Q ss_pred             eCCCC-------------------EEEeeeCCCCCCCc
Q psy12376         67 NHMTS-------------------KRVPVLGKHTKSKP   85 (89)
Q Consensus        67 d~~~~-------------------~~~~~l~~h~~~~~   85 (89)
                      |++.+                   +.+..+.+|...+.
T Consensus       288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~  325 (357)
T 3i2n_A          288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS  325 (357)
T ss_dssp             EEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE
T ss_pred             ecCCCcccccccCCCCccccccccceeeccccCCCCee
Confidence            99753                   34556677776543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.44  E-value=1.6e-12  Score=84.75  Aligned_cols=82  Identities=16%  Similarity=0.191  Sum_probs=69.4

Q ss_pred             cCCcEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec----------cEEEEEeCCCCEEEEeCCCC
Q psy12376          3 LRYYIFLLQTSQ-VGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG----------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         3 ~~~~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~----------~~las~s~d~~v~iwd~~~~   71 (89)
                      |...|++++|+| ++.+|++++.||.|++||..+++....+. +...+.+          .++++++.|+.|++||++++
T Consensus        98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  176 (408)
T 4a11_B           98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG  176 (408)
T ss_dssp             CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS
T ss_pred             CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc
Confidence            677899999999 77899999999999999999998877665 3343333          48999999999999999988


Q ss_pred             EEEeeeCCCCCCCc
Q psy12376         72 KRVPVLGKHTKSKP   85 (89)
Q Consensus        72 ~~~~~l~~h~~~~~   85 (89)
                      +....+..|...+.
T Consensus       177 ~~~~~~~~~~~~v~  190 (408)
T 4a11_B          177 SCSHILQGHRQEIL  190 (408)
T ss_dssp             CCCEEECCCCSCEE
T ss_pred             ceeeeecCCCCcEE
Confidence            88888888887654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.43  E-value=6.2e-14  Score=97.42  Aligned_cols=85  Identities=12%  Similarity=0.077  Sum_probs=68.9

Q ss_pred             CcCCcEEEE--EEccCC-CEEEEEeCCCcEEEEeCCCCeEeeEecCCcc--eeec-------cEEEEEeCCCCEEEEeCC
Q psy12376          2 NLRYYIFLL--QTSQVG-QVLAIGTARGNLTVYNHMTSKRVPVLGKHTN--TIVG-------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         2 ~~~~~i~~~--~~spdg-~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~--~i~~-------~~las~s~d~~v~iwd~~   69 (89)
                      .|.+.|+++  .|+|+| .+||+++.||+|+|||+++++....+.+|..  .+.+       +.|++++.|++|++||++
T Consensus       306 ~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~  385 (524)
T 2j04_B          306 VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSR  385 (524)
T ss_dssp             CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETT
T ss_pred             cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECc
Confidence            467789999  678998 8999999999999999998776666655542  2332       689999999999999999


Q ss_pred             CCEEEeeeCCCCCCCcC
Q psy12376         70 TSKRVPVLGKHTKSKPS   86 (89)
Q Consensus        70 ~~~~~~~l~~h~~~~~~   86 (89)
                      ++.....+.+|...+.+
T Consensus       386 ~~~~~~~l~gH~~~V~s  402 (524)
T 2j04_B          386 AAFAVHPLVSRETTITA  402 (524)
T ss_dssp             CTTCCEEEEECSSCEEE
T ss_pred             ccccceeeecCCCceEE
Confidence            88877777789887654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.43  E-value=1.7e-13  Score=91.24  Aligned_cols=77  Identities=12%  Similarity=-0.007  Sum_probs=60.3

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCCeEe-----eEecCCcceeec---------------cEEEEEeCCCCEEEEeCC
Q psy12376         10 LQTSQVGQVLAIGTARGNLTVYNHMTSKRV-----PVLGKHTNTIVG---------------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus        10 ~~~spdg~~la~g~~~g~v~iwd~~~~~~~-----~~~~~h~~~i~~---------------~~las~s~d~~v~iwd~~   69 (89)
                      ..+++++.+||+++.|++|++||.++++..     ..+.+|.+.|.+               ++|||||.|++|+|||++
T Consensus        95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~  174 (393)
T 4gq1_A           95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT  174 (393)
T ss_dssp             --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred             eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence            344556778999999999999999887653     235789998876               489999999999999998


Q ss_pred             CCEEEeeeCCCCCCCcC
Q psy12376         70 TSKRVPVLGKHTKSKPS   86 (89)
Q Consensus        70 ~~~~~~~l~~h~~~~~~   86 (89)
                      ++.....+.+|...+.+
T Consensus       175 ~~~~~~~~~~~~~~v~~  191 (393)
T 4gq1_A          175 DEGPILAGYPLSSPGIS  191 (393)
T ss_dssp             TTEEEEEEEECSSCEEE
T ss_pred             CCceeeeecCCCCCcEE
Confidence            87777767677665543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.41  E-value=1.9e-12  Score=92.49  Aligned_cols=83  Identities=12%  Similarity=0.271  Sum_probs=69.2

Q ss_pred             CcCCcEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCe--EeeEecCCcceeec---------cEEEEEeCCCCEEEEeC
Q psy12376          2 NLRYYIFLLQTSQV--GQVLAIGTARGNLTVYNHMTSK--RVPVLGKHTNTIVG---------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         2 ~~~~~i~~~~~spd--g~~la~g~~~g~v~iwd~~~~~--~~~~~~~h~~~i~~---------~~las~s~d~~v~iwd~   68 (89)
                      +|.++|++++|+|+  +++|++|+.||.|++||..+++  .+..+.+|...|.+         +++++|+.|+.|++||+
T Consensus        51 ~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl  130 (753)
T 3jro_A           51 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF  130 (753)
T ss_dssp             CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred             CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEe
Confidence            47788999999998  9999999999999999999886  66777889888877         48999999999999999


Q ss_pred             CCCE--EEeeeCCCCCCC
Q psy12376         69 MTSK--RVPVLGKHTKSK   84 (89)
Q Consensus        69 ~~~~--~~~~l~~h~~~~   84 (89)
                      +++.  ....+.+|...+
T Consensus       131 ~~~~~~~~~~~~~~~~~v  148 (753)
T 3jro_A          131 KENGTTSPIIIDAHAIGV  148 (753)
T ss_dssp             CSSSCCCCEEEECCSSCE
T ss_pred             ecCCCcceeEeecCCCce
Confidence            8662  333455666554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.35  E-value=5.7e-12  Score=84.43  Aligned_cols=74  Identities=16%  Similarity=0.130  Sum_probs=53.2

Q ss_pred             CCcEEEEEEcc---CCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcc---eeec-------cE------------EEEEe
Q psy12376          4 RYYIFLLQTSQ---VGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTN---TIVG-------QV------------LAIGT   58 (89)
Q Consensus         4 ~~~i~~~~~sp---dg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~---~i~~-------~~------------las~s   58 (89)
                      ...++.++|+|   +++.||+|+.|++|+|||.++|+.++.+.+|..   .+.+       ++            +++|+
T Consensus       178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs  257 (356)
T 2w18_A          178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS  257 (356)
T ss_dssp             CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred             CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence            34456677777   567899999999999999999999998876543   2221       22            58899


Q ss_pred             CCCCEEEEeCCCCEEEeee
Q psy12376         59 ARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        59 ~d~~v~iwd~~~~~~~~~l   77 (89)
                      .|++|++||..+++.+..+
T Consensus       258 ~D~tIklWd~~tgk~l~v~  276 (356)
T 2w18_A          258 PVFQLIVINPKTTLSVGVM  276 (356)
T ss_dssp             CCEEEEEEETTTTEEEEEE
T ss_pred             CCcEEEEEECCCCEEEEEE
Confidence            9999999999999877654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.31  E-value=2.1e-11  Score=80.21  Aligned_cols=75  Identities=16%  Similarity=0.176  Sum_probs=58.9

Q ss_pred             EEEccCCCEEEE--EeCCCcEEEEeCCCCe----------------EeeEecCCcceeec-------cEEEEEeCCCC-E
Q psy12376         10 LQTSQVGQVLAI--GTARGNLTVYNHMTSK----------------RVPVLGKHTNTIVG-------QVLAIGTARGN-L   63 (89)
Q Consensus        10 ~~~spdg~~la~--g~~~g~v~iwd~~~~~----------------~~~~~~~h~~~i~~-------~~las~s~d~~-v   63 (89)
                      ++++|  .++|+  |+.+|.|++||.++++                .+..+.+|...|.+       ++||+|+.|++ |
T Consensus       143 ~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v  220 (355)
T 3vu4_A          143 CEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTII  220 (355)
T ss_dssp             EEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEE
T ss_pred             EEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEE
Confidence            34444  45655  5889999999998765                26778899999887       79999999999 9


Q ss_pred             EEEeCCCCEEEeeeC-C-CCCCCcC
Q psy12376         64 TVYNHMTSKRVPVLG-K-HTKSKPS   86 (89)
Q Consensus        64 ~iwd~~~~~~~~~l~-~-h~~~~~~   86 (89)
                      +|||+++++.+..+. + |...+.+
T Consensus       221 ~iwd~~~~~~~~~~~~g~h~~~v~~  245 (355)
T 3vu4_A          221 RVFKTEDGVLVREFRRGLDRADVVD  245 (355)
T ss_dssp             EEEETTTCCEEEEEECTTCCSCEEE
T ss_pred             EEEECCCCcEEEEEEcCCCCCcEEE
Confidence            999999998888876 4 8876543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.25  E-value=7.2e-11  Score=78.18  Aligned_cols=78  Identities=6%  Similarity=0.002  Sum_probs=65.8

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEE-EEEeCCCCEEEEeCCCCEEE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVL-AIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~l-as~s~d~~v~iwd~~~~~~~   74 (89)
                      |...+.+++|+|+|.++++++.|+.|++||.++++.+..+..|...+.+       +++ ++++.|+.|++||+++++..
T Consensus       168 ~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~  247 (433)
T 3bws_A          168 KLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI  247 (433)
T ss_dssp             TCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE
Confidence            4567999999999999999999999999999999888888888776655       444 67778999999999988887


Q ss_pred             eeeCCC
Q psy12376         75 PVLGKH   80 (89)
Q Consensus        75 ~~l~~h   80 (89)
                      ..+..+
T Consensus       248 ~~~~~~  253 (433)
T 3bws_A          248 RKTDKI  253 (433)
T ss_dssp             EECCCC
T ss_pred             EEecCC
Confidence            766554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.19  E-value=4.5e-10  Score=73.49  Aligned_cols=80  Identities=6%  Similarity=-0.037  Sum_probs=64.5

Q ss_pred             CCcEEEEEEccCCCEEEEEe---CCCcEEEEeCCCCeEeeEecCCcceeec------cEE-EEEeCCCCEEEEeCCCCEE
Q psy12376          4 RYYIFLLQTSQVGQVLAIGT---ARGNLTVYNHMTSKRVPVLGKHTNTIVG------QVL-AIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~---~~g~v~iwd~~~~~~~~~~~~h~~~i~~------~~l-as~s~d~~v~iwd~~~~~~   73 (89)
                      ...+.+++|+|+|++|++++   .++.|.+||..+++.+..+..|..+...      +++ ++++.|+.|++||+.+++.
T Consensus       199 ~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~  278 (391)
T 1l0q_A          199 EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI  278 (391)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence            45688999999999998888   6899999999999888888776553221      445 7889999999999999998


Q ss_pred             EeeeCCCCCC
Q psy12376         74 VPVLGKHTKS   83 (89)
Q Consensus        74 ~~~l~~h~~~   83 (89)
                      ...+..|..+
T Consensus       279 ~~~~~~~~~~  288 (391)
T 1l0q_A          279 TATMAVGKNP  288 (391)
T ss_dssp             EEEEECSSSE
T ss_pred             EEEEECCcCC
Confidence            8877665443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.18  E-value=3.3e-10  Score=74.14  Aligned_cols=76  Identities=9%  Similarity=0.101  Sum_probs=60.6

Q ss_pred             CcEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cE-EEEEeCCCCEEEEeCCCCEEEe
Q psy12376          5 YYIFLLQTSQVGQVL-AIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QV-LAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         5 ~~i~~~~~spdg~~l-a~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~-las~s~d~~v~iwd~~~~~~~~   75 (89)
                      ..+.+++|+|+|+++ ++++.++.|++||..+++.+..+..+. .+.+       ++ +++++.|+.|++||+.+++...
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~  110 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence            458999999999977 677789999999999999888877655 4443       44 4666788999999999998877


Q ss_pred             eeCCCC
Q psy12376         76 VLGKHT   81 (89)
Q Consensus        76 ~l~~h~   81 (89)
                      .+..|.
T Consensus       111 ~~~~~~  116 (391)
T 1l0q_A          111 TVKTGK  116 (391)
T ss_dssp             EEECSS
T ss_pred             EEeCCC
Confidence            765543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.18  E-value=3.1e-11  Score=79.94  Aligned_cols=80  Identities=8%  Similarity=-0.017  Sum_probs=65.2

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEee-----EecCCcceeec-------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVP-----VLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~-----~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~   72 (89)
                      ..+.+++|+|++.++++++.++.|.+||..+++...     .+.+|...+.+       .++++++.|+.|++||+++++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence            345689999987888888889999999999988776     34467777665       789999999999999999888


Q ss_pred             EEeeeCCCCCCC
Q psy12376         73 RVPVLGKHTKSK   84 (89)
Q Consensus        73 ~~~~l~~h~~~~   84 (89)
                      ....+..|...+
T Consensus       203 ~~~~~~~~~~~~  214 (433)
T 3bws_A          203 YKATVDLTGKWS  214 (433)
T ss_dssp             EEEEEECSSSSE
T ss_pred             EEEEEcCCCCCe
Confidence            877777666543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.11  E-value=1.4e-09  Score=73.06  Aligned_cols=79  Identities=14%  Similarity=0.016  Sum_probs=60.0

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCC---cEEEEeCCCCeEeeEecCCcceeec-------cEEE-EEeCCCC--EEEEeCC
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARG---NLTVYNHMTSKRVPVLGKHTNTIVG-------QVLA-IGTARGN--LTVYNHM   69 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g---~v~iwd~~~~~~~~~~~~h~~~i~~-------~~la-s~s~d~~--v~iwd~~   69 (89)
                      +...+.+++|||||++||.++.++   .|++||+.+++.. .+..|...+.+       ++|+ +++.|+.  |++||+.
T Consensus       177 ~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~  255 (415)
T 2hqs_A          177 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  255 (415)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECC
Confidence            456799999999999999999875   9999999988764 45566665544       5566 7777665  9999998


Q ss_pred             CCEEEeeeCCCCCC
Q psy12376         70 TSKRVPVLGKHTKS   83 (89)
Q Consensus        70 ~~~~~~~l~~h~~~   83 (89)
                      +++. ..+..|...
T Consensus       256 ~~~~-~~l~~~~~~  268 (415)
T 2hqs_A          256 SGQI-RQVTDGRSN  268 (415)
T ss_dssp             TCCE-EECCCCSSC
T ss_pred             CCCE-EeCcCCCCc
Confidence            8776 445556543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.97  E-value=5.1e-09  Score=76.99  Aligned_cols=79  Identities=14%  Similarity=0.158  Sum_probs=62.6

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCC----------CEEE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARG----------NLTV   65 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~----------~v~i   65 (89)
                      +...+..++|||||++||+++.++.|++||..+++......+|...+.+       ++|++++.++          .|++
T Consensus       377 ~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l  456 (1045)
T 1k32_A          377 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV  456 (1045)
T ss_dssp             CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence            3456899999999999999999999999999999877777677665543       6788776654          8999


Q ss_pred             EeCCCCEEEeeeCCCCC
Q psy12376         66 YNHMTSKRVPVLGKHTK   82 (89)
Q Consensus        66 wd~~~~~~~~~l~~h~~   82 (89)
                      ||+.+++ ...+..|..
T Consensus       457 ~d~~~g~-~~~l~~~~~  472 (1045)
T 1k32_A          457 YDMEGRK-IFAATTENS  472 (1045)
T ss_dssp             EETTTTE-EEECSCSSS
T ss_pred             EECCCCc-EEEeeCCCc
Confidence            9998887 455555543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.94  E-value=1.8e-08  Score=64.12  Aligned_cols=71  Identities=11%  Similarity=0.114  Sum_probs=55.9

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcce--eec----cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNT--IVG----QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~--i~~----~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      .+.+++|+|||++++++  ++.|.+||..+++.+..+..+..+  +..    ++|++++.++.|.+||+.+++.+..+.
T Consensus       242 ~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          242 FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence            46789999999999888  799999999999887766533222  111    678888899999999999888777654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.83  E-value=2.1e-08  Score=62.35  Aligned_cols=82  Identities=6%  Similarity=-0.131  Sum_probs=58.2

Q ss_pred             cCCcEEEEEEccCCCEEEEEe-CCCcEEEEeCC-CCeEeeEecCCcceeec-------cEEEEEeCC-----------CC
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGT-ARGNLTVYNHM-TSKRVPVLGKHTNTIVG-------QVLAIGTAR-----------GN   62 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~-~~g~v~iwd~~-~~~~~~~~~~h~~~i~~-------~~las~s~d-----------~~   62 (89)
                      +...+.+++|+|+|++|+.++ .++.+.+|+.. .+..+..+..|...+.+       ++|++++.+           +.
T Consensus       171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~  250 (297)
T 2ojh_A          171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR  250 (297)
T ss_dssp             SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred             CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence            345689999999999888766 48899999875 45556677777665543       677777765           56


Q ss_pred             EEEEeCCCCEEE--eeeCCCCCCC
Q psy12376         63 LTVYNHMTSKRV--PVLGKHTKSK   84 (89)
Q Consensus        63 v~iwd~~~~~~~--~~l~~h~~~~   84 (89)
                      |++||+.+++..  ..+.+|...+
T Consensus       251 l~~~d~~~~~~~~~~~~~~~~~~~  274 (297)
T 2ojh_A          251 VQLMDMDGGNVETLFDLFGGQGTM  274 (297)
T ss_dssp             EEEEETTSCSCEEEEEEEESTTTS
T ss_pred             EEEEecCCCCceeeeccCCCCccc
Confidence            999999876543  3333555443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.78  E-value=2.8e-08  Score=69.99  Aligned_cols=78  Identities=15%  Similarity=0.130  Sum_probs=57.0

Q ss_pred             CcEEEEEEccCCCEEEEEeC-CC-----cEEEEeCCCCeEeeEecCCcc------------------------eeec---
Q psy12376          5 YYIFLLQTSQVGQVLAIGTA-RG-----NLTVYNHMTSKRVPVLGKHTN------------------------TIVG---   51 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~-~g-----~v~iwd~~~~~~~~~~~~h~~------------------------~i~~---   51 (89)
                      ..+.+++|||||++||+++. +|     .|.+||..+++....+..+..                        .+.+   
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW  116 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence            35899999999999999998 88     899999999887665543321                        1332   


Q ss_pred             ----cEEEEEeCCCCEEEEeCCCCE--EEeeeCCCCCC
Q psy12376         52 ----QVLAIGTARGNLTVYNHMTSK--RVPVLGKHTKS   83 (89)
Q Consensus        52 ----~~las~s~d~~v~iwd~~~~~--~~~~l~~h~~~   83 (89)
                          ++|++++. +.|++||+.++.  ....+..|...
T Consensus       117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~  153 (741)
T 2ecf_A          117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGF  153 (741)
T ss_dssp             CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSC
T ss_pred             CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcc
Confidence                78888876 999999998772  22334445433

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.77  E-value=1.9e-07  Score=59.72  Aligned_cols=72  Identities=17%  Similarity=0.096  Sum_probs=55.9

Q ss_pred             cEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcce--eec----cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376          6 YIFLLQTSQ-VGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNT--IVG----QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus         6 ~i~~~~~sp-dg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~--i~~----~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      .+..++|+| ||++++++  ++.|.+||..+++.+..+.....+  +..    ++|++++.++.|.+||+++++.+..+.
T Consensus       256 ~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          256 LYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             CEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             cceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence            467899999 99999888  889999999999877666432221  211    567778889999999999988877664


Q ss_pred             C
Q psy12376         79 K   79 (89)
Q Consensus        79 ~   79 (89)
                      -
T Consensus       334 ~  334 (349)
T 1jmx_B          334 L  334 (349)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.77  E-value=3.6e-08  Score=66.17  Aligned_cols=81  Identities=10%  Similarity=0.000  Sum_probs=59.6

Q ss_pred             CCcEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCC---CEEEEeCCC
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTAR---GNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARG---NLTVYNHMT   70 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~---g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~---~v~iwd~~~   70 (89)
                      ...+..++|||||++|+.++.+   ..|.+||..+++. ..+..+. .+.+       ++|++++.|+   .|++||+..
T Consensus       310 ~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g  387 (415)
T 2hqs_A          310 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG  387 (415)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC
Confidence            3468899999999999888764   5899999998875 4455543 3332       6788888777   799999974


Q ss_pred             CEEEeeeCCCCCCCcCC
Q psy12376         71 SKRVPVLGKHTKSKPST   87 (89)
Q Consensus        71 ~~~~~~l~~h~~~~~~~   87 (89)
                       .....+..|...+.++
T Consensus       388 -~~~~~l~~~~~~v~~~  403 (415)
T 2hqs_A          388 -RFKARLPATDGQVKFP  403 (415)
T ss_dssp             -CCEEECCCSSSEEEEE
T ss_pred             -CcEEEeeCCCCCCcCC
Confidence             4456677787766543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.74  E-value=2.1e-08  Score=69.27  Aligned_cols=74  Identities=15%  Similarity=0.002  Sum_probs=59.1

Q ss_pred             EEEEEccCCCEEEEEeCC----CcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCC--CEEEEeCCCCEEE
Q psy12376          8 FLLQTSQVGQVLAIGTAR----GNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARG--NLTVYNHMTSKRV   74 (89)
Q Consensus         8 ~~~~~spdg~~la~g~~~----g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~--~v~iwd~~~~~~~   74 (89)
                      .+++|||||++||.++.+    +.|++||..+++. ..+..|...+..       ++|++++.++  .|++||+.+++..
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            578999999999988777    7899999988764 466777665544       7888888888  8999999988876


Q ss_pred             eeeCCCCCC
Q psy12376         75 PVLGKHTKS   83 (89)
Q Consensus        75 ~~l~~h~~~   83 (89)
                       .+..|...
T Consensus       232 -~~~~~~~~  239 (582)
T 3o4h_A          232 -DLELPSKD  239 (582)
T ss_dssp             -ECCCSCSH
T ss_pred             -EccCCCcC
Confidence             66666544

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.74  E-value=6.3e-08  Score=67.42  Aligned_cols=78  Identities=10%  Similarity=0.130  Sum_probs=58.8

Q ss_pred             cEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCeEeeEecC----Ccce-e--ec----cEEEEEe-CCCCEEEEeCCC--
Q psy12376          6 YIFLLQTSQVGQVLAIG-TARGNLTVYNHMTSKRVPVLGK----HTNT-I--VG----QVLAIGT-ARGNLTVYNHMT--   70 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g-~~~g~v~iwd~~~~~~~~~~~~----h~~~-i--~~----~~las~s-~d~~v~iwd~~~--   70 (89)
                      .+..++|+|||++|+++ ..+++|.+||..+++.+..+..    |.+. +  ..    ..++++. .|++|.+||..+  
T Consensus       325 ~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~  404 (543)
T 1nir_A          325 FLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN  404 (543)
T ss_dssp             SCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred             CccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCC
Confidence            35578999999976554 5688999999999998877653    5422 1  11    5677775 689999999988  


Q ss_pred             -----CEEEeeeCCCCCC
Q psy12376         71 -----SKRVPVLGKHTKS   83 (89)
Q Consensus        71 -----~~~~~~l~~h~~~   83 (89)
                           .++++.+..|...
T Consensus       405 ~~~~~~~~v~~l~~~g~~  422 (543)
T 1nir_A          405 HPQYAWKKVAELQGQGGG  422 (543)
T ss_dssp             CTTTBTSEEEEEECSCSC
T ss_pred             CchhcCeEEEEEEcCCCC
Confidence                 7888888777654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.67  E-value=5.1e-07  Score=57.87  Aligned_cols=72  Identities=14%  Similarity=0.059  Sum_probs=56.9

Q ss_pred             EEEEEEccCCCEEEEEe--CCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376          7 IFLLQTSQVGQVLAIGT--ARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus         7 i~~~~~spdg~~la~g~--~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      +.+++|+|+|++++++.  .++.|.+||..+++.+..+..+...+.+       ++++.++.++.|.+||..+++....+
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~  222 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK  222 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE
Confidence            68899999999887776  4789999999999888777633322222       77888889999999999998877655


Q ss_pred             C
Q psy12376         78 G   78 (89)
Q Consensus        78 ~   78 (89)
                      .
T Consensus       223 ~  223 (353)
T 3vgz_A          223 K  223 (353)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.63  E-value=3.6e-07  Score=56.70  Aligned_cols=69  Identities=14%  Similarity=0.027  Sum_probs=49.5

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeEeeEecCCc-ceeec-------cEEEEEe--CCCCEEEEe--CC
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMT-SKRVPVLGKHT-NTIVG-------QVLAIGT--ARGNLTVYN--HM   69 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~-~~~~~~~~~h~-~~i~~-------~~las~s--~d~~v~iwd--~~   69 (89)
                      +...+.+++|+|||++|+++. ++.|.+||..+ ++.......+. ..+.+       ++|++++  .++...||.  +.
T Consensus        40 ~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~  118 (297)
T 2ojh_A           40 TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPST  118 (297)
T ss_dssp             ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETT
T ss_pred             CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECC
Confidence            456789999999999999987 78999999998 77666555553 33433       7888888  334555554  44


Q ss_pred             CCE
Q psy12376         70 TSK   72 (89)
Q Consensus        70 ~~~   72 (89)
                      ++.
T Consensus       119 ~~~  121 (297)
T 2ojh_A          119 GGT  121 (297)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            444

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.62  E-value=5.5e-07  Score=62.67  Aligned_cols=73  Identities=8%  Similarity=0.110  Sum_probs=57.7

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeC--CCCeEeeEecCCcce----ee-----c-cEEEEEe-CCCCEEEEeCCCCEE
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNH--MTSKRVPVLGKHTNT----IV-----G-QVLAIGT-ARGNLTVYNHMTSKR   73 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~--~~~~~~~~~~~h~~~----i~-----~-~~las~s-~d~~v~iwd~~~~~~   73 (89)
                      +.+++|||||++|++++.++.|.+||.  .+++.+..+..+..+    +.     . +++++++ .+++|.|||..+++.
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~  260 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP  260 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc
Confidence            778999999999999999999999999  788887777643322    11     2 4676666 589999999998887


Q ss_pred             EeeeCC
Q psy12376         74 VPVLGK   79 (89)
Q Consensus        74 ~~~l~~   79 (89)
                      +..+..
T Consensus       261 ~~~i~~  266 (543)
T 1nir_A          261 KQIVST  266 (543)
T ss_dssp             EEEEEC
T ss_pred             ceeecc
Confidence            776643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.61  E-value=3.3e-07  Score=59.73  Aligned_cols=69  Identities=17%  Similarity=0.106  Sum_probs=53.0

Q ss_pred             EEEccCCCEEEEEeC-CC--cEEEEeCCCCeEeeEecCCccee----ec---cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376         10 LQTSQVGQVLAIGTA-RG--NLTVYNHMTSKRVPVLGKHTNTI----VG---QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus        10 ~~~spdg~~la~g~~-~g--~v~iwd~~~~~~~~~~~~h~~~i----~~---~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      .+|||||++||..+. +|  .|.+||..+++......++...+    .+   ++|+.++.++.|++||+.+++......
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~  119 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ  119 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence            789999999998887 66  48888998887665555554333    22   789999999999999999887655443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.61  E-value=1.5e-07  Score=66.27  Aligned_cols=72  Identities=18%  Similarity=0.135  Sum_probs=55.7

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCe--EeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMTSK--RVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~~~--~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      +.+++|||||++|+.++. +.|.+||..+++  .+..+..|...+.+       ++|++++ ++.|++||+.+++.....
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence            678999999999999886 999999998872  34556666555544       7788877 458999999988776654


Q ss_pred             CCC
Q psy12376         78 GKH   80 (89)
Q Consensus        78 ~~h   80 (89)
                      ..+
T Consensus       189 ~~~  191 (741)
T 2ecf_A          189 ADG  191 (741)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            433

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.60  E-value=1.4e-06  Score=55.83  Aligned_cols=74  Identities=9%  Similarity=0.148  Sum_probs=54.7

Q ss_pred             CcEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeEeeEecCCcc-eee-c---c-EEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376          5 YYIFLLQTSQVGQVLAIGTA-RGNLTVYNHMTSKRVPVLGKHTN-TIV-G---Q-VLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~-~g~v~iwd~~~~~~~~~~~~h~~-~i~-~---~-~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      ..+..++|+|+|++++++.. ++.|.+||..+++.+..+..... .+. .   + ++++...++.|.+||..+++....+
T Consensus       231 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~  310 (353)
T 3vgz_A          231 HFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF  310 (353)
T ss_dssp             CCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence            34778999999997766665 58999999999887766653222 221 1   4 5666668999999999988877655


Q ss_pred             C
Q psy12376         78 G   78 (89)
Q Consensus        78 ~   78 (89)
                      .
T Consensus       311 ~  311 (353)
T 3vgz_A          311 D  311 (353)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.60  E-value=3.7e-07  Score=63.03  Aligned_cols=70  Identities=13%  Similarity=-0.016  Sum_probs=56.3

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCC--cEEEEeCCCCeEeeEecCCccee------------ec---cEEEEEeCCCCEEE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARG--NLTVYNHMTSKRVPVLGKHTNTI------------VG---QVLAIGTARGNLTV   65 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g--~v~iwd~~~~~~~~~~~~h~~~i------------~~---~~las~s~d~~v~i   65 (89)
                      +...+..++|||||++|+++..+|  .|.+||..+++.. .+.+|...+            .+   .++++++.|+.++|
T Consensus       193 ~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l  271 (582)
T 3o4h_A          193 GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAV  271 (582)
T ss_dssp             SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred             CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEE
Confidence            445689999999999999888888  8999999988776 666665422            22   68999999999999


Q ss_pred             EeCCCCEEEe
Q psy12376         66 YNHMTSKRVP   75 (89)
Q Consensus        66 wd~~~~~~~~   75 (89)
                      |++  ++...
T Consensus       272 ~~~--g~~~~  279 (582)
T 3o4h_A          272 FID--GERVE  279 (582)
T ss_dssp             EET--TEEEC
T ss_pred             EEE--CCeec
Confidence            999  66543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.59  E-value=2e-08  Score=70.51  Aligned_cols=67  Identities=6%  Similarity=-0.022  Sum_probs=52.9

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcc---eeec-------cEEEEEeCC---------CCEEEE
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTN---TIVG-------QVLAIGTAR---------GNLTVY   66 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~---~i~~-------~~las~s~d---------~~v~iw   66 (89)
                      ...+++|||||+++++ +.||.|.+||..+++....+..|..   .+.+       ++|++++.+         +.+++|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            3678899999997776 7899999999999887777766653   1332       788888775         678899


Q ss_pred             eCCCCEE
Q psy12376         67 NHMTSKR   73 (89)
Q Consensus        67 d~~~~~~   73 (89)
                      |+.+++.
T Consensus        97 d~~~~~~  103 (723)
T 1xfd_A           97 KIPHGDP  103 (723)
T ss_dssp             ESSSCCC
T ss_pred             ECCCCce
Confidence            9988765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.57  E-value=1.7e-07  Score=65.74  Aligned_cols=73  Identities=11%  Similarity=0.031  Sum_probs=54.1

Q ss_pred             cEEEEEEccCCCEEEEEeCC---------CcEEEEeCCCCeEeeEec---CCcceeec-------cEEEEEeCCCCEEEE
Q psy12376          6 YIFLLQTSQVGQVLAIGTAR---------GNLTVYNHMTSKRVPVLG---KHTNTIVG-------QVLAIGTARGNLTVY   66 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~---------g~v~iwd~~~~~~~~~~~---~h~~~i~~-------~~las~s~d~~v~iw   66 (89)
                      .+.+++|||||++||+++.+         +.+.+||+.+++. ..+.   +|...+.+       ++||+++. +.|++|
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~  139 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC  139 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEE
Confidence            37899999999999999874         7888999998865 3333   34333332       68888876 789999


Q ss_pred             eCCCCEEEeeeCCC
Q psy12376         67 NHMTSKRVPVLGKH   80 (89)
Q Consensus        67 d~~~~~~~~~l~~h   80 (89)
                      |+.+++.......+
T Consensus       140 ~~~~g~~~~~~~~~  153 (723)
T 1xfd_A          140 AHVGKQAIRVVSTG  153 (723)
T ss_dssp             SSSSSCCEEEECCC
T ss_pred             ECCCCceEEEecCC
Confidence            99887766555443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.54  E-value=1.3e-06  Score=55.84  Aligned_cols=71  Identities=10%  Similarity=0.065  Sum_probs=52.3

Q ss_pred             EEEEccCCCEEEEEeC-CCcEEEEeCCCCeE-eeEecCCcceee---c----cEEEEEeCCC---CEEEEeCCCCEEEee
Q psy12376          9 LLQTSQVGQVLAIGTA-RGNLTVYNHMTSKR-VPVLGKHTNTIV---G----QVLAIGTARG---NLTVYNHMTSKRVPV   76 (89)
Q Consensus         9 ~~~~spdg~~la~g~~-~g~v~iwd~~~~~~-~~~~~~h~~~i~---~----~~las~s~d~---~v~iwd~~~~~~~~~   76 (89)
                      +++|+|||+++++++. ++.|.+||..+++. ...+..+..+..   .    ++++++..++   .|.+||+.+++....
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~  123 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST  123 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE
Confidence            8999999997666655 88999999998876 555555444433   1    6777554443   899999998887776


Q ss_pred             eCC
Q psy12376         77 LGK   79 (89)
Q Consensus        77 l~~   79 (89)
                      +..
T Consensus       124 ~~~  126 (331)
T 3u4y_A          124 IPI  126 (331)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.52  E-value=8.5e-07  Score=56.31  Aligned_cols=72  Identities=18%  Similarity=0.096  Sum_probs=53.5

Q ss_pred             cEEEEEEccCCCEEEEEe------------CCCcEEEEeCCCCeEeeEecCCcc--eee-c---cEEEEEeCCCCEEEEe
Q psy12376          6 YIFLLQTSQVGQVLAIGT------------ARGNLTVYNHMTSKRVPVLGKHTN--TIV-G---QVLAIGTARGNLTVYN   67 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~------------~~g~v~iwd~~~~~~~~~~~~h~~--~i~-~---~~las~s~d~~v~iwd   67 (89)
                      .+..++|+|||++|+++.            .++.|.+||..+++.+..+.....  .+. .   ++|+++  ++.|.+||
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d  160 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMD  160 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEE
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEE
Confidence            456799999999998886            579999999999887766643221  111 1   566666  68899999


Q ss_pred             CCCCEEEeeeCC
Q psy12376         68 HMTSKRVPVLGK   79 (89)
Q Consensus        68 ~~~~~~~~~l~~   79 (89)
                      +.+++....+..
T Consensus       161 ~~~~~~~~~~~~  172 (337)
T 1pby_B          161 PEAGTLVEDKPI  172 (337)
T ss_dssp             TTTTEEEEEECS
T ss_pred             CCCCcEeeeeec
Confidence            999887766543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.51  E-value=4.1e-07  Score=57.89  Aligned_cols=66  Identities=14%  Similarity=0.015  Sum_probs=45.4

Q ss_pred             CCcEEEEEEccCCCEEEEEeCC-CcEEEEeCC--CCe--EeeEecCCcce--eec----cEE-EEEeCCCCEEEEeCC
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTAR-GNLTVYNHM--TSK--RVPVLGKHTNT--IVG----QVL-AIGTARGNLTVYNHM   69 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~-g~v~iwd~~--~~~--~~~~~~~h~~~--i~~----~~l-as~s~d~~v~iwd~~   69 (89)
                      ...+.+++|+|+|++|++++.+ +.|.+|++.  +++  .+..+..+..+  +..    ++| +++..++.|.+||+.
T Consensus        37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~  114 (343)
T 1ri6_A           37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  114 (343)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence            3457789999999988888876 899999987  554  23344333221  111    555 444558899999994

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.48  E-value=7.1e-07  Score=60.38  Aligned_cols=69  Identities=10%  Similarity=0.137  Sum_probs=51.9

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      ++. |+.++|  |+.+|+++ .+|.|++||+++.........|...+.+     ..+|.++.||.|.+||+.++....
T Consensus        87 lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~  160 (388)
T 1xip_A           87 IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ  160 (388)
T ss_dssp             CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc
Confidence            455 899999  99999998 7899999998765443344445454444     458888999999999998766543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.48  E-value=3.3e-07  Score=65.29  Aligned_cols=75  Identities=13%  Similarity=0.143  Sum_probs=56.3

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcce-----e---e-c---cEEEEEeCC---------CCEE
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNT-----I---V-G---QVLAIGTAR---------GNLT   64 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~-----i---~-~---~~las~s~d---------~~v~   64 (89)
                      ...+++|+|||++++++  ||.|.+||..+++....+.+|...     .   . +   ++|+.++.+         +.++
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            45689999999999886  899999999999877777766532     1   1 2   788888876         5667


Q ss_pred             EEeCCCCEEEeeeCCCCCC
Q psy12376         65 VYNHMTSKRVPVLGKHTKS   83 (89)
Q Consensus        65 iwd~~~~~~~~~l~~h~~~   83 (89)
                      +||+.+++... +..|...
T Consensus        96 ~~d~~~~~~~~-l~~~~~~  113 (740)
T 4a5s_A           96 IYDLNKRQLIT-EERIPNN  113 (740)
T ss_dssp             EEETTTTEECC-SSCCCTT
T ss_pred             EEECCCCcEEE-cccCCCc
Confidence            99999888654 4444443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.46  E-value=2.2e-06  Score=55.25  Aligned_cols=70  Identities=13%  Similarity=0.143  Sum_probs=47.1

Q ss_pred             cEEEEEEccCCCEE-EEEeCCCcEEEEeCCC-C--eEeeEecCCcceeec-------cEEEEEeC-CCCEEEE--eCCCC
Q psy12376          6 YIFLLQTSQVGQVL-AIGTARGNLTVYNHMT-S--KRVPVLGKHTNTIVG-------QVLAIGTA-RGNLTVY--NHMTS   71 (89)
Q Consensus         6 ~i~~~~~spdg~~l-a~g~~~g~v~iwd~~~-~--~~~~~~~~h~~~i~~-------~~las~s~-d~~v~iw--d~~~~   71 (89)
                      .+..++|+|||++| ++...++.|.+|++.. +  +.+..+..+...+..       ++|++++. ++.|.+|  |.+++
T Consensus       241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg  320 (347)
T 3hfq_A          241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSG  320 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCC
Confidence            47889999999987 5566789999999862 2  344444444332222       66666654 5899999  55566


Q ss_pred             EEEe
Q psy12376         72 KRVP   75 (89)
Q Consensus        72 ~~~~   75 (89)
                      +...
T Consensus       321 ~l~~  324 (347)
T 3hfq_A          321 KLSL  324 (347)
T ss_dssp             CEEE
T ss_pred             eEEe
Confidence            6543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.45  E-value=1e-06  Score=56.26  Aligned_cols=71  Identities=8%  Similarity=-0.046  Sum_probs=53.9

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCc--ce--eec----c-EEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376          8 FLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHT--NT--IVG----Q-VLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus         8 ~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~--~~--i~~----~-~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      +.+++++++.++++++.++.|.+||..+++.+..+..+.  .+  +..    + ++++.+.++.|.+||+.+++....+.
T Consensus         3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            3 TGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             -CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            356788999999999999999999999998877765433  21  111    4 55677789999999999888776553

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.45  E-value=9.8e-07  Score=64.99  Aligned_cols=77  Identities=12%  Similarity=0.123  Sum_probs=61.7

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEE-EEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLT-VYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~-iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      .+..++|+ ||+.|+.++.++.+. +||..+++.. .+.+|...+.+       ++|++++.++.|++||+.+++....+
T Consensus       339 ~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~  416 (1045)
T 1k32_A          339 RYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE  416 (1045)
T ss_dssp             EEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             eEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec
Confidence            68899999 999999999888888 9999877643 34466555443       78999999999999999998887777


Q ss_pred             CCCCCCC
Q psy12376         78 GKHTKSK   84 (89)
Q Consensus        78 ~~h~~~~   84 (89)
                      ..|...+
T Consensus       417 ~~~~~~v  423 (1045)
T 1k32_A          417 RSREAMI  423 (1045)
T ss_dssp             ECSSSCC
T ss_pred             cCCCCCc
Confidence            6666553

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.42  E-value=4.1e-07  Score=64.06  Aligned_cols=68  Identities=12%  Similarity=0.014  Sum_probs=49.9

Q ss_pred             EEEEEEccCCCEEEEEeC---------CCcEEEEeCCCCeEe--eEecCCc-ceeec---cEEEEEeCCCCEEEEeCCCC
Q psy12376          7 IFLLQTSQVGQVLAIGTA---------RGNLTVYNHMTSKRV--PVLGKHT-NTIVG---QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~---------~g~v~iwd~~~~~~~--~~~~~h~-~~i~~---~~las~s~d~~v~iwd~~~~   71 (89)
                      +.+++|||||++||.++.         ++.|.+||+.+++.+  ..+.... ....+   ++||+++ |+.|++||+.++
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g  140 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGD  140 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCC
Confidence            778999999999998876         789999999998762  2232111 11112   6788875 789999999877


Q ss_pred             EEEe
Q psy12376         72 KRVP   75 (89)
Q Consensus        72 ~~~~   75 (89)
                      +...
T Consensus       141 ~~~~  144 (719)
T 1z68_A          141 PPFQ  144 (719)
T ss_dssp             CCEE
T ss_pred             CcEE
Confidence            6544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.40  E-value=4.8e-06  Score=52.92  Aligned_cols=67  Identities=15%  Similarity=0.127  Sum_probs=45.3

Q ss_pred             cEEEEEEccCCCEEEEE-eCCCcEEEEeCC--CC--eEeeEecCCcceeec-------cEEEEEe-CCCCEEEEeC--CC
Q psy12376          6 YIFLLQTSQVGQVLAIG-TARGNLTVYNHM--TS--KRVPVLGKHTNTIVG-------QVLAIGT-ARGNLTVYNH--MT   70 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g-~~~g~v~iwd~~--~~--~~~~~~~~h~~~i~~-------~~las~s-~d~~v~iwd~--~~   70 (89)
                      .+..++|+|||++|+++ ..++.|.+||..  ++  +.+..+..+.. +.+       ++|++++ .|+.|.+|++  ++
T Consensus       232 ~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~  310 (343)
T 1ri6_A          232 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ  310 (343)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred             CccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence            46689999999988754 478999999997  33  33444443333 222       5666665 6899999954  46


Q ss_pred             CEE
Q psy12376         71 SKR   73 (89)
Q Consensus        71 ~~~   73 (89)
                      ++.
T Consensus       311 g~~  313 (343)
T 1ri6_A          311 GLL  313 (343)
T ss_dssp             TEE
T ss_pred             cee
Confidence            643

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.39  E-value=1.7e-06  Score=60.78  Aligned_cols=65  Identities=17%  Similarity=0.148  Sum_probs=50.4

Q ss_pred             EEEEEEccCCCEEEEEe---------------------------------CCCcEEEEeCCCCeEeeEec--CCcceeec
Q psy12376          7 IFLLQTSQVGQVLAIGT---------------------------------ARGNLTVYNHMTSKRVPVLG--KHTNTIVG   51 (89)
Q Consensus         7 i~~~~~spdg~~la~g~---------------------------------~~g~v~iwd~~~~~~~~~~~--~h~~~i~~   51 (89)
                      +.+++|||||++||.++                                 .+..|.+||+.+++......  .|...+.+
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  262 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN  262 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence            47899999999999987                                 45689999999887654432  35444443


Q ss_pred             -------cEEEEEeCCC-----CEEEEeCCCC
Q psy12376         52 -------QVLAIGTARG-----NLTVYNHMTS   71 (89)
Q Consensus        52 -------~~las~s~d~-----~v~iwd~~~~   71 (89)
                             ++|++++.|+     .|++||+.++
T Consensus       263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g  294 (706)
T 2z3z_A          263 LSWSPDENILYVAEVNRAQNECKVNAYDAETG  294 (706)
T ss_dssp             EEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred             EEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence                   6788877775     8999999988

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.34  E-value=4.4e-06  Score=53.29  Aligned_cols=69  Identities=9%  Similarity=0.163  Sum_probs=49.8

Q ss_pred             CcEEEEEEccCCCEEEE-EeCCCcEEEEeCCCCeE---eeEecCCcce--eec----cE-EEEEeCCCCEEEEeCCCCEE
Q psy12376          5 YYIFLLQTSQVGQVLAI-GTARGNLTVYNHMTSKR---VPVLGKHTNT--IVG----QV-LAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~-g~~~g~v~iwd~~~~~~---~~~~~~h~~~--i~~----~~-las~s~d~~v~iwd~~~~~~   73 (89)
                      .....++|+|||+++++ +..++.|.+||..+++.   +..+..+..+  +..    ++ +++...++.|.+||+.+++.
T Consensus       176 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          176 TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            34789999999996654 45688999999998887   6666543222  111    54 45555688899999998877

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.33  E-value=8.5e-06  Score=53.79  Aligned_cols=67  Identities=13%  Similarity=0.180  Sum_probs=51.7

Q ss_pred             EEEccCCCEEEEEeC-----------CCcEEEEeCCCCeEeeEecCCcceeec------cEEEEEeCCCCEEEEeCCCC-
Q psy12376         10 LQTSQVGQVLAIGTA-----------RGNLTVYNHMTSKRVPVLGKHTNTIVG------QVLAIGTARGNLTVYNHMTS-   71 (89)
Q Consensus        10 ~~~spdg~~la~g~~-----------~g~v~iwd~~~~~~~~~~~~h~~~i~~------~~las~s~d~~v~iwd~~~~-   71 (89)
                      ++|+||+..+.+...           ++.|.+||..+++.+..+..+. +...      ++|+++.. ++|.+||..++ 
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~  336 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE  336 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSS
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCc
Confidence            789999887766543           3489999999999988887655 2111      67777766 99999999999 


Q ss_pred             -EEEeeeC
Q psy12376         72 -KRVPVLG   78 (89)
Q Consensus        72 -~~~~~l~   78 (89)
                       +.+..+.
T Consensus       337 l~~~~~i~  344 (361)
T 2oiz_A          337 PKLLRTIE  344 (361)
T ss_dssp             CEEEEEET
T ss_pred             ceeeEEec
Confidence             8887753

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.31  E-value=4.5e-06  Score=58.59  Aligned_cols=79  Identities=16%  Similarity=0.129  Sum_probs=55.3

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCeEeeEec--CCcc--------ee-e--c-cEEEEEeCCCCEE
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARG-----NLTVYNHMTSKRVPVLG--KHTN--------TI-V--G-QVLAIGTARGNLT   64 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g-----~v~iwd~~~~~~~~~~~--~h~~--------~i-~--~-~~las~s~d~~v~   64 (89)
                      ...+..++|||||++|++++.+.     .|.+||..+++....+.  .+..        .. .  . +++++++.|+.++
T Consensus       257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~  336 (706)
T 2z3z_A          257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH  336 (706)
T ss_dssp             TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred             ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccE
Confidence            34588999999999999887765     99999999983333221  1111        11 1  2 6889999999999


Q ss_pred             EEeCC-CCEEEeeeCCCCC
Q psy12376         65 VYNHM-TSKRVPVLGKHTK   82 (89)
Q Consensus        65 iwd~~-~~~~~~~l~~h~~   82 (89)
                      ||++. ++.....+..|..
T Consensus       337 l~~~~~~~~~~~~l~~~~~  355 (706)
T 2z3z_A          337 LYLYDTTGRLIRQVTKGEW  355 (706)
T ss_dssp             EEEEETTSCEEEECCCSSS
T ss_pred             EEEEECCCCEEEecCCCCe
Confidence            99885 5665566655543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.30  E-value=1.7e-06  Score=60.29  Aligned_cols=77  Identities=9%  Similarity=-0.129  Sum_probs=53.7

Q ss_pred             CCcEEEEEEccCCCEEEEEeCC----------CcEEEEeCCC------CeEeeEec-CCcceeec-------cEEEEEeC
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTAR----------GNLTVYNHMT------SKRVPVLG-KHTNTIVG-------QVLAIGTA   59 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~----------g~v~iwd~~~------~~~~~~~~-~h~~~i~~-------~~las~s~   59 (89)
                      ...+..++|||||+.|+.++.+          ..|.+||..+      ++. ..+. .+...+..       ++|+.++.
T Consensus       129 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~  207 (662)
T 3azo_A          129 GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAW  207 (662)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEE
T ss_pred             CccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEEC
Confidence            3457899999999999988876          5899999987      543 4444 44343332       77887775


Q ss_pred             C--------CCEEEEeCC-CC---EEEeeeCCCC
Q psy12376         60 R--------GNLTVYNHM-TS---KRVPVLGKHT   81 (89)
Q Consensus        60 d--------~~v~iwd~~-~~---~~~~~l~~h~   81 (89)
                      +        ..|++||+. ++   +.......|.
T Consensus       208 ~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~  241 (662)
T 3azo_A          208 DHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE  241 (662)
T ss_dssp             CTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred             CCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence            5        379999998 56   4444444443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.27  E-value=4.6e-06  Score=58.14  Aligned_cols=75  Identities=13%  Similarity=0.104  Sum_probs=51.1

Q ss_pred             CcEEEEEEccCCCEEEEEeCC--------CcEEEEeCC-CC---eEeeEecCCcceeec-------cEEEEEeCCC--CE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTAR--------GNLTVYNHM-TS---KRVPVLGKHTNTIVG-------QVLAIGTARG--NL   63 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~--------g~v~iwd~~-~~---~~~~~~~~h~~~i~~-------~~las~s~d~--~v   63 (89)
                      +.+..++|||||++||..+.+        ..|.+||+. +|   +......+|...+..       +++++++.|+  .|
T Consensus       188 ~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l  267 (662)
T 3azo_A          188 RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNL  267 (662)
T ss_dssp             SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEE
T ss_pred             CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEE
Confidence            456788999999999987754        379999998 56   433333334343332       6788888888  67


Q ss_pred             EEEeCCCCEEEeeeCC
Q psy12376         64 TVYNHMTSKRVPVLGK   79 (89)
Q Consensus        64 ~iwd~~~~~~~~~l~~   79 (89)
                      ++||+.+++.......
T Consensus       268 ~~~~~~~~~~~~l~~~  283 (662)
T 3azo_A          268 HRVDPATGAATQLCRR  283 (662)
T ss_dssp             EEECTTTCCEEESSCC
T ss_pred             EEEECCCCceeecccc
Confidence            7777767766554443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.25  E-value=1e-06  Score=62.00  Aligned_cols=64  Identities=16%  Similarity=0.197  Sum_probs=49.0

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcc---eeec-------cEEEEEeC---------CCCEEEEeCC
Q psy12376          9 LLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTN---TIVG-------QVLAIGTA---------RGNLTVYNHM   69 (89)
Q Consensus         9 ~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~---~i~~-------~~las~s~---------d~~v~iwd~~   69 (89)
                      .++|+|||+++++ +.|+.|.+||..+++....+..|..   .+.+       ++|++++.         |+.|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            6899999965554 5699999999999887666654432   1222       78888876         7899999999


Q ss_pred             CCEE
Q psy12376         70 TSKR   73 (89)
Q Consensus        70 ~~~~   73 (89)
                      +++.
T Consensus        99 ~g~~  102 (719)
T 1z68_A           99 NGEF  102 (719)
T ss_dssp             TTEE
T ss_pred             CCcc
Confidence            8877

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.20  E-value=7.3e-06  Score=58.02  Aligned_cols=67  Identities=10%  Similarity=-0.046  Sum_probs=48.7

Q ss_pred             cEEEEEEccCCCEEEE-----EeCCCcEEEEeCCCCeEe-e-EecCC--cceeec---cEEEEEeCCCC-----------
Q psy12376          6 YIFLLQTSQVGQVLAI-----GTARGNLTVYNHMTSKRV-P-VLGKH--TNTIVG---QVLAIGTARGN-----------   62 (89)
Q Consensus         6 ~i~~~~~spdg~~la~-----g~~~g~v~iwd~~~~~~~-~-~~~~h--~~~i~~---~~las~s~d~~-----------   62 (89)
                      .+..++|||||++||.     |+.+..|++||+.+|+.+ . .+...  .....+   +.|+.++.|..           
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~  201 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGY  201 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGG
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCC
Confidence            5889999999999983     444568999999998765 2 12222  122222   78888888876           


Q ss_pred             --EEEEeCCCCE
Q psy12376         63 --LTVYNHMTSK   72 (89)
Q Consensus        63 --v~iwd~~~~~   72 (89)
                        |++|++.+++
T Consensus       202 ~~v~~~~l~t~~  213 (695)
T 2bkl_A          202 TTIRYHTLGTEP  213 (695)
T ss_dssp             CEEEEEETTSCG
T ss_pred             CEEEEEECCCCc
Confidence              9999998765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.19  E-value=4.5e-06  Score=54.22  Aligned_cols=72  Identities=14%  Similarity=0.071  Sum_probs=50.9

Q ss_pred             EEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeEeeEecCCcc----eeec---cEEEEEeCCCCEEEEeCCCCEEEee
Q psy12376          7 IFLLQTSQVGQVLAIGTAR---GNLTVYNHMTSKRVPVLGKHTN----TIVG---QVLAIGTARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~---g~v~iwd~~~~~~~~~~~~h~~----~i~~---~~las~s~d~~v~iwd~~~~~~~~~   76 (89)
                      +..++|||||++||.....   ..|.+||..+++......++..    ...+   ++|+.++.++.|++||+.+++....
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            5667899999998877553   3788889988875443332222    1122   7898999999999999988765554


Q ss_pred             eC
Q psy12376         77 LG   78 (89)
Q Consensus        77 l~   78 (89)
                      ..
T Consensus       118 ~~  119 (396)
T 3c5m_A          118 YT  119 (396)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.19  E-value=2.8e-05  Score=49.78  Aligned_cols=70  Identities=13%  Similarity=0.088  Sum_probs=51.5

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCC----CCEEEEeCCCCEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTAR----GNLTVYNHMTSKR   73 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d----~~v~iwd~~~~~~   73 (89)
                      ..+.+++|+|+|+.++++..++.|.+||..+++.......+...+.+       +++++...+    +.|.+||.+++..
T Consensus        45 ~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~  124 (333)
T 2dg1_A           45 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  124 (333)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             ccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE
Confidence            34689999999998888888999999999887755443233333433       566766666    6899999987655


Q ss_pred             E
Q psy12376         74 V   74 (89)
Q Consensus        74 ~   74 (89)
                      .
T Consensus       125 ~  125 (333)
T 2dg1_A          125 Q  125 (333)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.17  E-value=2.8e-05  Score=50.41  Aligned_cols=64  Identities=8%  Similarity=0.048  Sum_probs=43.6

Q ss_pred             cEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeE--eeEecC---Ccc---eeec----cEEEEEeC--CCCEEEEeCC
Q psy12376          6 YIFLLQTSQVGQVLAIGT-ARGNLTVYNHMTSKR--VPVLGK---HTN---TIVG----QVLAIGTA--RGNLTVYNHM   69 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~-~~g~v~iwd~~~~~~--~~~~~~---h~~---~i~~----~~las~s~--d~~v~iwd~~   69 (89)
                      .+..++|+|||++++++. .++.|.+|+..+++.  +..+..   +..   .+..    ++|+.+..  ++.|.+|++.
T Consensus       212 ~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          212 GPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             CCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            467899999999887777 689999999987754  222222   111   1211    66655444  5899999995

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.14  E-value=3.5e-05  Score=49.92  Aligned_cols=70  Identities=9%  Similarity=0.037  Sum_probs=45.5

Q ss_pred             cEEEEEEccCCCEEEEEeCC--CcEEEEeCC--CCe--EeeEecCCcceeec-------cEEEEEe-CCCCEEEEe--CC
Q psy12376          6 YIFLLQTSQVGQVLAIGTAR--GNLTVYNHM--TSK--RVPVLGKHTNTIVG-------QVLAIGT-ARGNLTVYN--HM   69 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~--g~v~iwd~~--~~~--~~~~~~~h~~~i~~-------~~las~s-~d~~v~iwd--~~   69 (89)
                      ....++|||||++|+++..+  +.|.+|++.  +++  .+..+.. ...+.+       ++|++++ .++.|.+|+  .+
T Consensus       260 ~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~  338 (361)
T 3scy_A          260 GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQA  338 (361)
T ss_dssp             CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTT
T ss_pred             CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECC
Confidence            35799999999988766654  899999985  454  3333332 111211       6666665 778999964  45


Q ss_pred             CCEEEee
Q psy12376         70 TSKRVPV   76 (89)
Q Consensus        70 ~~~~~~~   76 (89)
                      +++....
T Consensus       339 ~g~~~~~  345 (361)
T 3scy_A          339 TGLLTDI  345 (361)
T ss_dssp             TCCEEEC
T ss_pred             CCcEeec
Confidence            6666543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.14  E-value=1.8e-05  Score=51.01  Aligned_cols=69  Identities=12%  Similarity=0.095  Sum_probs=47.1

Q ss_pred             CcEEEEEEccCCCEEEEEe-CCCcEEEEeCC-CCe--EeeEecCC-cc--------eeec-------cEEEEEeCCCCEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGT-ARGNLTVYNHM-TSK--RVPVLGKH-TN--------TIVG-------QVLAIGTARGNLT   64 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~-~~g~v~iwd~~-~~~--~~~~~~~h-~~--------~i~~-------~~las~s~d~~v~   64 (89)
                      ..+..++|+|||++|++++ .++.+.+|++. +++  .+..+... ..        .+.+       +++++...++.|.
T Consensus        86 ~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~  165 (347)
T 3hfq_A           86 TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVY  165 (347)
T ss_dssp             CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEE
Confidence            3567899999999888887 68899999985 333  22222211 01        1221       6777777889999


Q ss_pred             EEeCC-CCEE
Q psy12376         65 VYNHM-TSKR   73 (89)
Q Consensus        65 iwd~~-~~~~   73 (89)
                      +||+. +++.
T Consensus       166 ~~~~~~~g~~  175 (347)
T 3hfq_A          166 VYNVSDAGQL  175 (347)
T ss_dssp             EEEECTTSCE
T ss_pred             EEEECCCCcE
Confidence            99997 5543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.13  E-value=4.6e-06  Score=59.43  Aligned_cols=66  Identities=12%  Similarity=0.016  Sum_probs=49.8

Q ss_pred             EEEEEccCCCEEEEEeCC---------CcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCC
Q psy12376          8 FLLQTSQVGQVLAIGTAR---------GNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         8 ~~~~~spdg~~la~g~~~---------g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~   71 (89)
                      ..++|||||++||.++.+         +.+.+||+.+++.. .+..|...+..       +.||.+ .|+.|++||+.++
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~  142 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNL  142 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTS
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCC
Confidence            348999999999999876         66789999998754 45555554443       778887 4689999999876


Q ss_pred             EEEe
Q psy12376         72 KRVP   75 (89)
Q Consensus        72 ~~~~   75 (89)
                      ....
T Consensus       143 ~~~~  146 (740)
T 4a5s_A          143 PSYR  146 (740)
T ss_dssp             CCEE
T ss_pred             ceEE
Confidence            6443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.09  E-value=3.2e-05  Score=48.97  Aligned_cols=69  Identities=6%  Similarity=-0.043  Sum_probs=52.2

Q ss_pred             cEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEee
Q psy12376          6 YIFLLQTSQVGQ-VLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus         6 ~i~~~~~spdg~-~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~   76 (89)
                      ...+++|+|+|+ .++++..++.|.+||..++  ...+..+...+.+       +++++...++.|.+||..+++....
T Consensus        29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~  105 (296)
T 3e5z_A           29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESI  105 (296)
T ss_dssp             SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEE
T ss_pred             cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEE
Confidence            367899999998 7888888999999999877  4455444443333       6777777778999999977765544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.08  E-value=1.7e-05  Score=56.27  Aligned_cols=67  Identities=12%  Similarity=0.017  Sum_probs=49.4

Q ss_pred             cEEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCeEeeEecCC---cceeec---cEEEEEeCCCC------------
Q psy12376          6 YIFLLQTSQVGQVLAIGTARG-----NLTVYNHMTSKRVPVLGKH---TNTIVG---QVLAIGTARGN------------   62 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g-----~v~iwd~~~~~~~~~~~~h---~~~i~~---~~las~s~d~~------------   62 (89)
                      .+..++|||||++||.+..++     .|++||+.+|+.......+   .....+   +.|+.++.++.            
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~  205 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccC
Confidence            478899999999999776644     8999999999876532211   122222   67888888776            


Q ss_pred             ----EEEEeCCCCE
Q psy12376         63 ----LTVYNHMTSK   72 (89)
Q Consensus        63 ----v~iwd~~~~~   72 (89)
                          |++|++.+++
T Consensus       206 ~~~~v~~~~l~t~~  219 (710)
T 2xdw_A          206 LHQKLYYHVLGTDQ  219 (710)
T ss_dssp             CCCEEEEEETTSCG
T ss_pred             CCCEEEEEECCCCc
Confidence                9999998765

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.08  E-value=2.9e-05  Score=49.85  Aligned_cols=65  Identities=15%  Similarity=0.128  Sum_probs=45.3

Q ss_pred             EEEEEEccCCCEEEEEeCC---C--cEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeC---------------
Q psy12376          7 IFLLQTSQVGQVLAIGTAR---G--NLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTA---------------   59 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~---g--~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~---------------   59 (89)
                      +..++|||||++||..+.+   +  .|.+||..+++.......+.  +..       +.|+.++.               
T Consensus        61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~  138 (347)
T 2gop_A           61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP  138 (347)
T ss_dssp             CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred             CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence            5679999999999887654   3  48888888877544433222  332       56666653               


Q ss_pred             ------------CCCEEEEeCCCCEE
Q psy12376         60 ------------RGNLTVYNHMTSKR   73 (89)
Q Consensus        60 ------------d~~v~iwd~~~~~~   73 (89)
                                  ...|++||+.+++.
T Consensus       139 ~~~~g~~~~~~~~~~l~~~d~~~~~~  164 (347)
T 2gop_A          139 AWFDDLGFFDGEKTTFWIFDTESEEV  164 (347)
T ss_dssp             CC---------CEEEEEEEETTTTEE
T ss_pred             eeecCcccccCccceEEEEECCCCeE
Confidence                        25799999988876

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.01  E-value=4.6e-05  Score=49.52  Aligned_cols=69  Identities=14%  Similarity=-0.059  Sum_probs=49.2

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceee------c---cEEEE----------------------
Q psy12376          8 FLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV------G---QVLAI----------------------   56 (89)
Q Consensus         8 ~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~------~---~~las----------------------   56 (89)
                      ..+.|||||+.|+.+..++.+.+||+.+++....+..+...+.      .   .+++.                      
T Consensus        84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  163 (388)
T 3pe7_A           84 FGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYF  163 (388)
T ss_dssp             SSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGG
T ss_pred             cceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhc
Confidence            3568999999999999999999999999876555544433221      1   34442                      


Q ss_pred             EeCCCCEEEEeCCCCEEEee
Q psy12376         57 GTARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus        57 ~s~d~~v~iwd~~~~~~~~~   76 (89)
                      .+.+..|++||+.+++....
T Consensus       164 ~~~~~~l~~~d~~~g~~~~l  183 (388)
T 3pe7_A          164 TKPCCRLMRVDLKTGESTVI  183 (388)
T ss_dssp             GCCCEEEEEEETTTCCEEEE
T ss_pred             cCCcceEEEEECCCCceEEe
Confidence            22457899999988765544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.96  E-value=1.6e-05  Score=52.65  Aligned_cols=61  Identities=15%  Similarity=0.174  Sum_probs=44.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         15 VGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        15 dg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      ++..+++++.||.|+.||..+|+.+..+..  +.+.+       ..+++++.|+.|+.||.++|+.....
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~   75 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL   75 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEEC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee
Confidence            578999999999999999999998877765  33322       47777789999999999887765444

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.95  E-value=0.00014  Score=47.05  Aligned_cols=67  Identities=7%  Similarity=-0.008  Sum_probs=51.6

Q ss_pred             CcEEEEEEccCCCEEEEEeCC------------------------CcEEEEeCCCCeEeeEecC-Ccceeec-------c
Q psy12376          5 YYIFLLQTSQVGQVLAIGTAR------------------------GNLTVYNHMTSKRVPVLGK-HTNTIVG-------Q   52 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~------------------------g~v~iwd~~~~~~~~~~~~-h~~~i~~-------~   52 (89)
                      ..+.+++++|+|+.+++...+                        +.|.+||..+++.+..+.. +-.....       +
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~  103 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN  103 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence            458999999999999988877                        5799999988887766642 2122211       7


Q ss_pred             EEEEEeCCCCEEEEeCCCC
Q psy12376         53 VLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus        53 ~las~s~d~~v~iwd~~~~   71 (89)
                      ++++.+.++.|++||....
T Consensus       104 l~v~d~~~~~v~~~~~~g~  122 (329)
T 3fvz_A          104 YWVTDVALHQVFKLDPHSK  122 (329)
T ss_dssp             EEEEETTTTEEEEECTTCS
T ss_pred             EEEEECCCCEEEEEeCCCC
Confidence            8888888999999998644

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.95  E-value=5.6e-05  Score=49.83  Aligned_cols=68  Identities=10%  Similarity=0.063  Sum_probs=49.9

Q ss_pred             EEEEccCCCEEEEEeC----------CCcEEEEeCCCCeEeeEecCC---------cceeec----cEEEEEeC--CCCE
Q psy12376          9 LLQTSQVGQVLAIGTA----------RGNLTVYNHMTSKRVPVLGKH---------TNTIVG----QVLAIGTA--RGNL   63 (89)
Q Consensus         9 ~~~~spdg~~la~g~~----------~g~v~iwd~~~~~~~~~~~~h---------~~~i~~----~~las~s~--d~~v   63 (89)
                      .++|||||++++++..          ++.|.+||..+++.+..+...         ...+..    ++|..+..  +++|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            7999999999988762          567999999988877665421         111111    66666643  6899


Q ss_pred             EEEeCCCCEEEee
Q psy12376         64 TVYNHMTSKRVPV   76 (89)
Q Consensus        64 ~iwd~~~~~~~~~   76 (89)
                      .+||+.+++.+..
T Consensus       134 ~v~d~~~~~~~~~  146 (361)
T 2oiz_A          134 GIVDVAKGDYVED  146 (361)
T ss_dssp             EEEETTTTEEEEE
T ss_pred             EEEECCCCcEEEE
Confidence            9999999888766

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.93  E-value=6.6e-05  Score=48.01  Aligned_cols=71  Identities=8%  Similarity=0.013  Sum_probs=55.9

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCccee----ec--cEEEEEeCCCCEEEEeCCCCEEEeeeCC
Q psy12376          8 FLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTI----VG--QVLAIGTARGNLTVYNHMTSKRVPVLGK   79 (89)
Q Consensus         8 ~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i----~~--~~las~s~d~~v~iwd~~~~~~~~~l~~   79 (89)
                      ..+++.++|+++++...++.|..||.. |+.+..+.....+.    ..  +++++++.++.|..+|..+|+.+..+..
T Consensus       128 ~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~  204 (276)
T 3no2_A          128 RQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA  204 (276)
T ss_dssp             SCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred             cCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence            345788999999999999999999998 89888876532221    11  7888888888899999998888777653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.90  E-value=6.9e-05  Score=48.54  Aligned_cols=68  Identities=10%  Similarity=-0.143  Sum_probs=47.8

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-cEEEEE------------------------------e
Q psy12376         10 LQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-QVLAIG------------------------------T   58 (89)
Q Consensus        10 ~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-~~las~------------------------------s   58 (89)
                      +.|||||++|+..+.++.|.+||..+++.......+...... +.|+..                              .
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~  165 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTN  165 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTC
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCC
Confidence            789999999999999999999999888765554434333222 333321                              3


Q ss_pred             CCCCEEEEeCCCCEEEeee
Q psy12376         59 ARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        59 ~d~~v~iwd~~~~~~~~~l   77 (89)
                      .+..|++||+.+++.....
T Consensus       166 ~~~~l~~~d~~~g~~~~~~  184 (396)
T 3c5m_A          166 PTCRLIKVDIETGELEVIH  184 (396)
T ss_dssp             CCEEEEEEETTTCCEEEEE
T ss_pred             CcceEEEEECCCCcEEeec
Confidence            5568999999877655443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.87  E-value=8.1e-05  Score=48.66  Aligned_cols=67  Identities=12%  Similarity=0.111  Sum_probs=45.1

Q ss_pred             cEEEEE-EccCCCEEEEEeCCC------cEEEEeCC-CCeEee---EecCCcc-----ee-e---c-cEEEEEeC-CCCE
Q psy12376          6 YIFLLQ-TSQVGQVLAIGTARG------NLTVYNHM-TSKRVP---VLGKHTN-----TI-V---G-QVLAIGTA-RGNL   63 (89)
Q Consensus         6 ~i~~~~-~spdg~~la~g~~~g------~v~iwd~~-~~~~~~---~~~~h~~-----~i-~---~-~~las~s~-d~~v   63 (89)
                      .+..++ |||||++|+++..+.      .|.+|++. +|+...   ....+..     .+ .   . ++|++++. ++.|
T Consensus       255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v  334 (365)
T 1jof_A          255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWL  334 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEE
T ss_pred             ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeE
Confidence            478899 999999887765432      89999985 566432   1222211     11 2   3 67888776 4899


Q ss_pred             EEEeCCCCE
Q psy12376         64 TVYNHMTSK   72 (89)
Q Consensus        64 ~iwd~~~~~   72 (89)
                      .+|+++...
T Consensus       335 ~v~~~~~~~  343 (365)
T 1jof_A          335 EIYRWKDEF  343 (365)
T ss_dssp             EEEEEETTE
T ss_pred             EEEEEchhh
Confidence            999997653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.85  E-value=0.00017  Score=45.17  Aligned_cols=64  Identities=16%  Similarity=0.284  Sum_probs=46.2

Q ss_pred             CcEEEEEEccCCCEEEEEeCCC-cEEEEeCCCCeEeeEecCCcc--eeec-------cEEEEEeCCCCEEEEeCCC
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARG-NLTVYNHMTSKRVPVLGKHTN--TIVG-------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g-~v~iwd~~~~~~~~~~~~h~~--~i~~-------~~las~s~d~~v~iwd~~~   70 (89)
                      ..+..++++|+|+.+++...++ .|.+||. +++.+..+..+..  .+.+       +++++ +.|+.|++|+...
T Consensus       207 ~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          207 NYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             CSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             CCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            3578999999999888888776 9999996 4566666544322  1111       55555 6799999999854

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.83  E-value=0.00028  Score=49.67  Aligned_cols=72  Identities=10%  Similarity=0.072  Sum_probs=54.3

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCC--CCeEeeEecCCcc----eee-----c-c-EEEEEeCCCCEEEEeCCCCE
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHM--TSKRVPVLGKHTN----TIV-----G-Q-VLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~--~~~~~~~~~~h~~----~i~-----~-~-~las~s~d~~v~iwd~~~~~   72 (89)
                      .+..+.|||||+++++++.++.|.+||..  +++.+..+.....    .+.     . + .+++...+++|.|+|..+.+
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~  277 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE  277 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc
Confidence            46689999999999999999999999995  7777666643222    233     3 3 45556677999999998887


Q ss_pred             EEeee
Q psy12376         73 RVPVL   77 (89)
Q Consensus        73 ~~~~l   77 (89)
                      .+..+
T Consensus       278 ~~~~i  282 (567)
T 1qks_A          278 PKKIQ  282 (567)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.82  E-value=0.0004  Score=43.83  Aligned_cols=72  Identities=10%  Similarity=-0.053  Sum_probs=47.8

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeE---eeEecCCcc---eeec----cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHM-TSKR---VPVLGKHTN---TIVG----QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~-~~~~---~~~~~~h~~---~i~~----~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      ....++|+|||+.|++.+.++.|.+|+.. +|+.   ...+..+..   .+..    +++++.  ++.|.+||.. ++..
T Consensus       173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~  249 (296)
T 3e5z_A          173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDEL  249 (296)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEE
T ss_pred             CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEE
Confidence            46789999999988888888999999986 4544   233322222   1211    555554  7889999986 5555


Q ss_pred             eeeCCC
Q psy12376         75 PVLGKH   80 (89)
Q Consensus        75 ~~l~~h   80 (89)
                      ..+..+
T Consensus       250 ~~~~~~  255 (296)
T 3e5z_A          250 GRVLTP  255 (296)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            555443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.81  E-value=7.7e-05  Score=48.77  Aligned_cols=68  Identities=10%  Similarity=-0.000  Sum_probs=46.6

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeEeeEec--CCcce--eec----c--EEEEEe-------------CCC
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHM-TSKRVPVLG--KHTNT--IVG----Q--VLAIGT-------------ARG   61 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~-~~~~~~~~~--~h~~~--i~~----~--~las~s-------------~d~   61 (89)
                      .+..++|+|||++|++++.+ .|.+|++. +|+......  .+..+  +..    +  ++++++             .++
T Consensus        41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g  119 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG  119 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred             CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence            46789999999999888887 99999987 777543322  11111  111    4  355553             689


Q ss_pred             CEEEEeCC-CCEEE
Q psy12376         62 NLTVYNHM-TSKRV   74 (89)
Q Consensus        62 ~v~iwd~~-~~~~~   74 (89)
                      ++.+|++. +++..
T Consensus       120 ~v~v~~~~~~g~~~  133 (365)
T 1jof_A          120 YGNVFSVSETGKLE  133 (365)
T ss_dssp             EEEEEEECTTCCEE
T ss_pred             eEEEEccCCCCcCc
Confidence            99999996 45543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.78  E-value=0.001  Score=42.92  Aligned_cols=72  Identities=11%  Similarity=0.058  Sum_probs=52.9

Q ss_pred             EEEEEEccC-CCEEEEEeCCCcEEEEeCCCCeEeeEecC--Ccceeec-------------cEEEEEeCCCCEEEEeCCC
Q psy12376          7 IFLLQTSQV-GQVLAIGTARGNLTVYNHMTSKRVPVLGK--HTNTIVG-------------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         7 i~~~~~spd-g~~la~g~~~g~v~iwd~~~~~~~~~~~~--h~~~i~~-------------~~las~s~d~~v~iwd~~~   70 (89)
                      ...++++|+ |..+++...++.|.+||..+|+.+..+..  +...+.+             +.+++.+.+..|++||..+
T Consensus       198 p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~  277 (329)
T 3fvz_A          198 PHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS  277 (329)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred             CcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCC
Confidence            789999999 77888888899999999988888777642  3222221             2233334455899999998


Q ss_pred             CEEEeeeC
Q psy12376         71 SKRVPVLG   78 (89)
Q Consensus        71 ~~~~~~l~   78 (89)
                      ++.+..++
T Consensus       278 g~~~~~~~  285 (329)
T 3fvz_A          278 GEIIDVFK  285 (329)
T ss_dssp             CCEEEEEC
T ss_pred             CeEEEEEc
Confidence            88888764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.74  E-value=0.00016  Score=51.77  Aligned_cols=54  Identities=17%  Similarity=0.212  Sum_probs=42.5

Q ss_pred             CCcEEEEeCCCCeEeeEecCCc----ceeec--cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376         25 RGNLTVYNHMTSKRVPVLGKHT----NTIVG--QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus        25 ~g~v~iwd~~~~~~~~~~~~h~----~~i~~--~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      +|.|..||..+|+.+..+..+.    +.+..  .+++.|+.|+.|+.||.++|+.+..+.
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~  513 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP  513 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence            3789999999999887765332    22222  789999999999999999999886654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.74  E-value=0.00046  Score=43.22  Aligned_cols=71  Identities=14%  Similarity=0.247  Sum_probs=50.5

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCc--ceeec-------cEEEEEeCCC-CEEEEeCCCCEEEe
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHT--NTIVG-------QVLAIGTARG-NLTVYNHMTSKRVP   75 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~--~~i~~-------~~las~s~d~-~v~iwd~~~~~~~~   75 (89)
                      .+..++++|+|+.+++...++.|.+||.. ++.+..+..+.  ..+..       +++++...++ .|.+||.. ++.+.
T Consensus       165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~  242 (286)
T 1q7f_A          165 FPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLIS  242 (286)
T ss_dssp             SEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEE
T ss_pred             CcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEE
Confidence            47899999999988888889999999974 55666664331  22221       6777777775 99999975 44444


Q ss_pred             eeC
Q psy12376         76 VLG   78 (89)
Q Consensus        76 ~l~   78 (89)
                      .+.
T Consensus       243 ~~~  245 (286)
T 1q7f_A          243 ALE  245 (286)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.65  E-value=0.00099  Score=43.13  Aligned_cols=73  Identities=11%  Similarity=-0.080  Sum_probs=51.2

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCc------c--eee-c--cEEEEEe-CCCCEEEEeCCCCE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHT------N--TIV-G--QVLAIGT-ARGNLTVYNHMTSK   72 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~------~--~i~-~--~~las~s-~d~~v~iwd~~~~~   72 (89)
                      .....++++|+|+.+++...++.|.+||..+++....+....      .  .+. .  .++++.. .++.|.++|..+++
T Consensus        84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~  163 (328)
T 3dsm_A           84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDK  163 (328)
T ss_dssp             SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTE
T ss_pred             CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCe
Confidence            347889999999554554489999999999998776554222      1  121 2  4455544 48899999999888


Q ss_pred             EEeee
Q psy12376         73 RVPVL   77 (89)
Q Consensus        73 ~~~~l   77 (89)
                      ....+
T Consensus       164 ~~~~i  168 (328)
T 3dsm_A          164 VVDEL  168 (328)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77655

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.64  E-value=0.00017  Score=51.15  Aligned_cols=64  Identities=8%  Similarity=-0.018  Sum_probs=44.3

Q ss_pred             EEEEEEccCCCEEEEEeCCCc----------------EEEEeCCCCeE--eeEec--CCcceeec-------cEEEEEeC
Q psy12376          7 IFLLQTSQVGQVLAIGTARGN----------------LTVYNHMTSKR--VPVLG--KHTNTIVG-------QVLAIGTA   59 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~----------------v~iwd~~~~~~--~~~~~--~h~~~i~~-------~~las~s~   59 (89)
                      +..++|||||+.|+.++.++.                |.+|++.+++.  ...+.  .|...+..       ++|+.++.
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~  252 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence            456899999999999988766                99999987652  12222  23332221       66666654


Q ss_pred             -----CCCEEEEeCCC
Q psy12376         60 -----RGNLTVYNHMT   70 (89)
Q Consensus        60 -----d~~v~iwd~~~   70 (89)
                           +..|++||+.+
T Consensus       253 ~~~~~~~~l~~~d~~~  268 (710)
T 2xdw_A          253 EGCDPVNRLWYCDLQQ  268 (710)
T ss_dssp             CSSSSCCEEEEEEGGG
T ss_pred             ccCCCccEEEEEECcc
Confidence                 67899999975

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.63  E-value=0.00051  Score=43.84  Aligned_cols=72  Identities=8%  Similarity=-0.074  Sum_probs=54.4

Q ss_pred             cEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeEeeEecC------Ccce---e--ec--cEEEEEeCCCCEEEEeCCCC
Q psy12376          6 YIFLLQTSQVGQVLAIGTA-RGNLTVYNHMTSKRVPVLGK------HTNT---I--VG--QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~-~g~v~iwd~~~~~~~~~~~~------h~~~---i--~~--~~las~s~d~~v~iwd~~~~   71 (89)
                      .+.++++.|||+++++.+. ++.+..+|. +|+.+..+..      +...   +  ..  +++++.+.++.|.+||.+ |
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G  155 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G  155 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence            5788999999999999887 888888886 6777665531      1111   1  11  899999999999999998 8


Q ss_pred             EEEeeeCC
Q psy12376         72 KRVPVLGK   79 (89)
Q Consensus        72 ~~~~~l~~   79 (89)
                      +.+..+..
T Consensus       156 ~~~w~~~~  163 (276)
T 3no2_A          156 QLLNSVKL  163 (276)
T ss_dssp             CEEEEEEC
T ss_pred             CEEEEEEC
Confidence            87776654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.60  E-value=0.0011  Score=47.27  Aligned_cols=76  Identities=14%  Similarity=0.057  Sum_probs=49.0

Q ss_pred             cEEEEEEccCCCEEEEEeCCC-----cEEEEeCCCC--eEeeEecCCcceee----c--cEEEEEeCC----CCEEEEeC
Q psy12376          6 YIFLLQTSQVGQVLAIGTARG-----NLTVYNHMTS--KRVPVLGKHTNTIV----G--QVLAIGTAR----GNLTVYNH   68 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g-----~v~iwd~~~~--~~~~~~~~h~~~i~----~--~~las~s~d----~~v~iwd~   68 (89)
                      .+..+.|||||++|+..+.++     .|.+||..++  +....+..+.....    .  +.|+..+.+    +.|.+||+
T Consensus       269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~  348 (741)
T 1yr2_A          269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDL  348 (741)
T ss_dssp             CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEEC
T ss_pred             EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeC
Confidence            478999999999998887554     8999998776  31344444332211    1  556666554    34999999


Q ss_pred             CCC--EEEeeeCCCC
Q psy12376         69 MTS--KRVPVLGKHT   81 (89)
Q Consensus        69 ~~~--~~~~~l~~h~   81 (89)
                      .++  .....+..+.
T Consensus       349 ~~~~~~~~~l~~~~~  363 (741)
T 1yr2_A          349 SGSTPRFDTVVPESK  363 (741)
T ss_dssp             SSSSCEEEEEECCCS
T ss_pred             CCCccccEEEecCCC
Confidence            774  4444444443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.55  E-value=0.00033  Score=49.61  Aligned_cols=66  Identities=9%  Similarity=-0.099  Sum_probs=45.1

Q ss_pred             EEEEEccCCCEEEEEeCCCc-------------EEEEeCCCCe----EeeEecCCcceeec-------cEEEEEeCCC--
Q psy12376          8 FLLQTSQVGQVLAIGTARGN-------------LTVYNHMTSK----RVPVLGKHTNTIVG-------QVLAIGTARG--   61 (89)
Q Consensus         8 ~~~~~spdg~~la~g~~~g~-------------v~iwd~~~~~----~~~~~~~h~~~i~~-------~~las~s~d~--   61 (89)
                      ..++|+|||+.|+.++.+..             |++|++.++.    .+.....|...+..       ++|+.++.++  
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~  250 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS  250 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence            67899999999999988776             9999998765    23233334333322       6676666555  


Q ss_pred             --CEEEEeCCCCEE
Q psy12376         62 --NLTVYNHMTSKR   73 (89)
Q Consensus        62 --~v~iwd~~~~~~   73 (89)
                        .|++||..+++.
T Consensus       251 ~~~l~~~~~~~~~~  264 (695)
T 2bkl_A          251 ENDVYWKRPGEKDF  264 (695)
T ss_dssp             EEEEEEECTTCSSC
T ss_pred             ceEEEEEcCCCCce
Confidence              777887655543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.50  E-value=0.00057  Score=48.85  Aligned_cols=53  Identities=23%  Similarity=0.300  Sum_probs=41.6

Q ss_pred             CcEEEEeCCCCeEeeEecCC----cceeec--cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376         26 GNLTVYNHMTSKRVPVLGKH----TNTIVG--QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus        26 g~v~iwd~~~~~~~~~~~~h----~~~i~~--~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      |.|..||..+|+.+..+...    ...+..  .+++.++.|+.+++||.++++.+..+.
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence            78999999999987766422    223332  788889999999999999999887664

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.50  E-value=0.00058  Score=46.19  Aligned_cols=69  Identities=10%  Similarity=-0.002  Sum_probs=49.2

Q ss_pred             EEEEccCCCEEEEEe----------CCCcEEEEeCCCCeEeeEecC----------Ccceee--c--cEEEEEe--CCCC
Q psy12376          9 LLQTSQVGQVLAIGT----------ARGNLTVYNHMTSKRVPVLGK----------HTNTIV--G--QVLAIGT--ARGN   62 (89)
Q Consensus         9 ~~~~spdg~~la~g~----------~~g~v~iwd~~~~~~~~~~~~----------h~~~i~--~--~~las~s--~d~~   62 (89)
                      .+++||||+++..+.          .++.|.+||..+++.+..+.-          +...+.  .  +++..+.  .++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            499999999886665          367899999999988776531          111122  1  5555443  3789


Q ss_pred             EEEEeCCCCEEEeee
Q psy12376         63 LTVYNHMTSKRVPVL   77 (89)
Q Consensus        63 v~iwd~~~~~~~~~l   77 (89)
                      |.++|+.+++.+..+
T Consensus       162 VsVID~~t~~vv~tI  176 (386)
T 3sjl_D          162 VGVVDLEGKAFKRML  176 (386)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEEECCCCcEEEEE
Confidence            999999999887765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.47  E-value=0.0028  Score=41.21  Aligned_cols=77  Identities=13%  Similarity=0.095  Sum_probs=53.7

Q ss_pred             CcEEEEEEccCCCEEEEEeC-----CCcEEEEeCCCCeEeeEecCC------c---c--eeec---cEEEEEe---CCCC
Q psy12376          5 YYIFLLQTSQVGQVLAIGTA-----RGNLTVYNHMTSKRVPVLGKH------T---N--TIVG---QVLAIGT---ARGN   62 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~-----~g~v~iwd~~~~~~~~~~~~h------~---~--~i~~---~~las~s---~d~~   62 (89)
                      ..+..++++|+|+.+++...     ++.|.+||..+++.+..+.-.      .   .  .+..   ..+++-+   .++.
T Consensus        67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~  146 (343)
T 2qe8_A           67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA  146 (343)
T ss_dssp             SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE
T ss_pred             eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe
Confidence            45889999999987776554     579999999998866655321      1   1  1111   3445555   6889


Q ss_pred             EEEEeCCCCEEEeeeCCCC
Q psy12376         63 LTVYNHMTSKRVPVLGKHT   81 (89)
Q Consensus        63 v~iwd~~~~~~~~~l~~h~   81 (89)
                      |.+||+.+++....+.+|.
T Consensus       147 i~v~d~~~g~~~r~~~~~~  165 (343)
T 2qe8_A          147 LIRVDLQTGLAARVLQGYP  165 (343)
T ss_dssp             EEEEETTTCCEEEECTTCT
T ss_pred             EEEEECCCCCEEEEecCCC
Confidence            9999998888777776653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.43  E-value=0.0033  Score=41.82  Aligned_cols=70  Identities=9%  Similarity=0.004  Sum_probs=50.4

Q ss_pred             EEEEEEccCCCEEEEEeC----------CCcEEEEeCCCCeEeeEecCCc--ceeec----c-EEEEEe-CCCCEEEEeC
Q psy12376          7 IFLLQTSQVGQVLAIGTA----------RGNLTVYNHMTSKRVPVLGKHT--NTIVG----Q-VLAIGT-ARGNLTVYNH   68 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~----------~g~v~iwd~~~~~~~~~~~~h~--~~i~~----~-~las~s-~d~~v~iwd~   68 (89)
                      ...++++||++.+.+...          ++.|.++|..+++.+..+....  ..+.-    + +++++. .++.|.++|.
T Consensus       269 ~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~  348 (373)
T 2mad_H          269 WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             eEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence            344788999887766543          3589999999999877764321  12211    5 666666 5899999999


Q ss_pred             CCCEEEee
Q psy12376         69 MTSKRVPV   76 (89)
Q Consensus        69 ~~~~~~~~   76 (89)
                      .+++.+..
T Consensus       349 ~t~~vv~~  356 (373)
T 2mad_H          349 GAGDQDQS  356 (373)
T ss_pred             CCCCEEee
Confidence            99888876

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.40  E-value=0.00078  Score=48.07  Aligned_cols=67  Identities=10%  Similarity=-0.065  Sum_probs=46.4

Q ss_pred             cEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCeEeeEec-CC--cceeec--cEEEEEeCCCC-------------
Q psy12376          6 YIFLLQTSQVGQVLAIGTAR-----GNLTVYNHMTSKRVPVLG-KH--TNTIVG--QVLAIGTARGN-------------   62 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~-----g~v~iwd~~~~~~~~~~~-~h--~~~i~~--~~las~s~d~~-------------   62 (89)
                      .+..++|||||++||.+..+     ..|++||+.+|+.+.... ..  .....+  +.|+.++.|..             
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~  243 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQ  243 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCCCC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCC
Confidence            47789999999999887654     359999999988654311 11  122222  56777776654             


Q ss_pred             -EEEEeCCCCE
Q psy12376         63 -LTVYNHMTSK   72 (89)
Q Consensus        63 -v~iwd~~~~~   72 (89)
                       |++|++.++.
T Consensus       244 ~v~~~~lgt~~  254 (741)
T 1yr2_A          244 TVWLHRLGTPQ  254 (741)
T ss_dssp             EEEEEETTSCG
T ss_pred             EEEEEECCCCc
Confidence             8999997654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.40  E-value=0.0018  Score=40.71  Aligned_cols=66  Identities=3%  Similarity=-0.053  Sum_probs=47.9

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------c-EEEEEeCCCCEEEEeCCC
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------Q-VLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~-~las~s~d~~v~iwd~~~   70 (89)
                      ..+..++++++|..+++...++.|.+||..+++.+..+..+...+.+       + ++++...++.|..|++..
T Consensus       226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            34678999999998888888899999999877665555544333332       4 555666677888888864

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.36  E-value=0.0024  Score=40.57  Aligned_cols=74  Identities=15%  Similarity=0.095  Sum_probs=49.0

Q ss_pred             EEEEEEccCCCEE-EEEeCCCcEEEEeC--CCCeE-----eeEecCCcce---eec----cEEEEEeCCCCEEEEeCCCC
Q psy12376          7 IFLLQTSQVGQVL-AIGTARGNLTVYNH--MTSKR-----VPVLGKHTNT---IVG----QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         7 i~~~~~spdg~~l-a~g~~~g~v~iwd~--~~~~~-----~~~~~~h~~~---i~~----~~las~s~d~~v~iwd~~~~   71 (89)
                      ...++|+|||+.| ++.+.++.|.+|+.  .+|+.     +..+..+...   +..    ++.++...++.|..||.+++
T Consensus       151 pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG  230 (297)
T 3g4e_A          151 SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG  230 (297)
T ss_dssp             EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred             ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence            5689999999866 55666889999986  45543     1222222121   111    67777777888999999878


Q ss_pred             EEEeeeCCC
Q psy12376         72 KRVPVLGKH   80 (89)
Q Consensus        72 ~~~~~l~~h   80 (89)
                      +....+..+
T Consensus       231 ~~~~~i~~p  239 (297)
T 3g4e_A          231 KRLQTVKLP  239 (297)
T ss_dssp             CEEEEEECS
T ss_pred             eEEEEEECC
Confidence            777665443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.30  E-value=0.0034  Score=41.75  Aligned_cols=66  Identities=12%  Similarity=0.023  Sum_probs=47.8

Q ss_pred             EEEEEEccCCCEEEEEeC--CCcEEEEeCCCCeEeeE-ecCCcce-eec---cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          7 IFLLQTSQVGQVLAIGTA--RGNLTVYNHMTSKRVPV-LGKHTNT-IVG---QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~--~g~v~iwd~~~~~~~~~-~~~h~~~-i~~---~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      ...++|||||++|+.+..  ++.|.++| .+++.+.. +...... +..   ..+++.+.|+.+.++|. +++..
T Consensus       127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~  199 (373)
T 2mad_H          127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA  199 (373)
T ss_pred             ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEE
Confidence            457899999999988764  57899999 99988777 5422111 111   45666778999999999 66554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.29  E-value=0.0023  Score=42.86  Aligned_cols=69  Identities=9%  Similarity=0.076  Sum_probs=50.1

Q ss_pred             EEEccCCCEEEEEeC---------CCcEEEEeCCCCeEeeEecCCcc--eee--c---cEEEEEe-CCCCEEEEeCCCCE
Q psy12376         10 LQTSQVGQVLAIGTA---------RGNLTVYNHMTSKRVPVLGKHTN--TIV--G---QVLAIGT-ARGNLTVYNHMTSK   72 (89)
Q Consensus        10 ~~~spdg~~la~g~~---------~g~v~iwd~~~~~~~~~~~~h~~--~i~--~---~~las~s-~d~~v~iwd~~~~~   72 (89)
                      ++++|||+.+..+..         ++.+.++|..+++.+..+.....  .|.  .   .++++.. .+++|.++|+.+++
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence            789999987776543         23566999999988776643221  121  1   3677777 69999999999999


Q ss_pred             EEeeeC
Q psy12376         73 RVPVLG   78 (89)
Q Consensus        73 ~~~~l~   78 (89)
                      .+..+.
T Consensus       349 vv~~I~  354 (368)
T 1mda_H          349 DQSSVE  354 (368)
T ss_dssp             EEEECC
T ss_pred             EEEEEE
Confidence            988774

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.25  E-value=0.0011  Score=40.84  Aligned_cols=67  Identities=7%  Similarity=0.026  Sum_probs=45.4

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCC
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~   71 (89)
                      ..+.+++++++|..+++...++.|.+|+..+.........+...+.+       +++++...++.|++++....
T Consensus       192 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          192 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            34789999999988888778899999998764432221122122221       67777778888888887543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=97.23  E-value=0.0041  Score=42.05  Aligned_cols=63  Identities=13%  Similarity=0.141  Sum_probs=47.4

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----~~las~s~d~~v~iwd~~~~~~   73 (89)
                      ..+..+.+.+.  .+|+.+.||.+.+||..++....    +...|.|     +-++.|..||++++|+...++.
T Consensus       127 ~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~~  194 (388)
T 1xip_A          127 KPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEM  194 (388)
T ss_dssp             SCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSEEEEEETTSCEEEEEEETTEE
T ss_pred             cceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCceEEEEcCCcEEEEcCCCccc
Confidence            34667776654  38888999999999998776543    2344555     4478899999999999987774

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.22  E-value=0.0073  Score=38.39  Aligned_cols=69  Identities=6%  Similarity=-0.038  Sum_probs=44.4

Q ss_pred             CcEEEEEEccCCCEEEEEeCC----CcEEEEeCCCCeEeeEec--CCcceeec-------cEEEEEeC------CCCEEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTAR----GNLTVYNHMTSKRVPVLG--KHTNTIVG-------QVLAIGTA------RGNLTV   65 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~----g~v~iwd~~~~~~~~~~~--~h~~~i~~-------~~las~s~------d~~v~i   65 (89)
                      ..+.+++|+|+|+.+++...+    +.|.+||..+++....+.  .+...+.+       +++++...      ++.|..
T Consensus        87 ~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~  166 (333)
T 2dg1_A           87 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYY  166 (333)
T ss_dssp             SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEE
T ss_pred             CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEE
Confidence            458999999999988887766    689999988776443332  12223322       45555543      355666


Q ss_pred             EeCCCCEE
Q psy12376         66 YNHMTSKR   73 (89)
Q Consensus        66 wd~~~~~~   73 (89)
                      +|..+++.
T Consensus       167 ~~~~~~~~  174 (333)
T 2dg1_A          167 VSPDFRTV  174 (333)
T ss_dssp             ECTTSCCE
T ss_pred             EeCCCCEE
Confidence            77655443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.20  E-value=0.00018  Score=47.64  Aligned_cols=68  Identities=10%  Similarity=0.046  Sum_probs=43.3

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecC--Ccceeec------cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         10 LQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGK--HTNTIVG------QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        10 ~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~--h~~~i~~------~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      ..++|++..+++++.++.|..||.++|+.+..+..  ...++.+      ..++.++.|+.|+.||.++|+.....
T Consensus       124 ~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~  199 (369)
T 2hz6_A          124 DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ  199 (369)
T ss_dssp             ---------EEEEEEEEEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred             ccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence            34567888889999999999999999887655431  1122211      45777889999999999988876544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.18  E-value=0.0092  Score=38.41  Aligned_cols=71  Identities=8%  Similarity=-0.020  Sum_probs=51.7

Q ss_pred             EEEEEEccCCCEEEEEeC--CCcEEEEeCCCCeEeeEec--CCcc--eeec---cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376          7 IFLLQTSQVGQVLAIGTA--RGNLTVYNHMTSKRVPVLG--KHTN--TIVG---QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~--~g~v~iwd~~~~~~~~~~~--~h~~--~i~~---~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      ...++|+|||..+++.+.  ++.|.++|..+++.+..+.  .+..  .+.-   .+.++...++.+.++|..+.+.+..+
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i  102 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNF  102 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEE
Confidence            578999999754444332  5799999999999887754  2211  1211   66777788999999999998887766

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.17  E-value=0.0091  Score=38.56  Aligned_cols=71  Identities=11%  Similarity=-0.044  Sum_probs=49.3

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcce--ee--c--cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNT--IV--G--QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~--i~--~--~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      ....+.+. +++.+++...++.|.+||..+++.+..+.....+  +.  .  +++++...++.|.+||..+++....+
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i  121 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI  121 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence            45677774 3455566666899999999999987777532222  11  1  45555558999999999998876544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.15  E-value=0.0035  Score=44.00  Aligned_cols=54  Identities=15%  Similarity=0.121  Sum_probs=41.0

Q ss_pred             CCcEEEEeCCCCeEeeEecC----Ccceee-c-cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376         25 RGNLTVYNHMTSKRVPVLGK----HTNTIV-G-QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus        25 ~g~v~iwd~~~~~~~~~~~~----h~~~i~-~-~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      +|.|..||..+|+.+..+..    ...++. . .+++.++.|+.|+.+|.++++.+..+.
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence            57999999999998776542    122322 2 677779999999999999999887653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.14  E-value=0.0065  Score=39.54  Aligned_cols=63  Identities=13%  Similarity=0.074  Sum_probs=42.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEeeEecCC-----cceeec-cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         15 VGQVLAIGTARGNLTVYNHMTSKRVPVLGKH-----TNTIVG-QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        15 dg~~la~g~~~g~v~iwd~~~~~~~~~~~~h-----~~~i~~-~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      ++..+.+++.+|.+..+|..+|+.+......     ..++.. ..|..++.++.|+++|.++++.....
T Consensus       276 ~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~  344 (376)
T 3q7m_A          276 DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQ  344 (376)
T ss_dssp             ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            3556777777888888888888776655421     112222 67777888888888888887766544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.13  E-value=0.0073  Score=40.85  Aligned_cols=66  Identities=12%  Similarity=0.058  Sum_probs=49.5

Q ss_pred             EEEEEccCCCEEEEEeC--CCcEEEEeCCCCeEeeEecCCc-ceeec---cEEEEEeCCCCEEEEeCCC-CEE
Q psy12376          8 FLLQTSQVGQVLAIGTA--RGNLTVYNHMTSKRVPVLGKHT-NTIVG---QVLAIGTARGNLTVYNHMT-SKR   73 (89)
Q Consensus         8 ~~~~~spdg~~la~g~~--~g~v~iwd~~~~~~~~~~~~h~-~~i~~---~~las~s~d~~v~iwd~~~-~~~   73 (89)
                      ..++|+|||+++.++..  ++.|.++|..+++.+..+.... ..+..   ..+++.+.||.+.+.++.+ ++.
T Consensus       140 ~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          140 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred             ceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence            45899999999887763  6899999999999888774321 11111   5667788899999999975 554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.12  E-value=0.0016  Score=46.25  Aligned_cols=67  Identities=12%  Similarity=0.075  Sum_probs=45.4

Q ss_pred             cEEEEEEccCCCEEEEEe-----CCCcEEEEeCCCCeEeeE-ecCC--cceee-c-cEEEEEeCCCC-------------
Q psy12376          6 YIFLLQTSQVGQVLAIGT-----ARGNLTVYNHMTSKRVPV-LGKH--TNTIV-G-QVLAIGTARGN-------------   62 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~-----~~g~v~iwd~~~~~~~~~-~~~h--~~~i~-~-~~las~s~d~~-------------   62 (89)
                      .+..++|||||++||.+.     ....|++||+.+|+.+.. +...  ..... . +.|+.++.|..             
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~  209 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTDQHK  209 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEETTTEEEEEESSCCC-------CCCCE
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEeCCCEEEEEEecCcccccccccCCCcE
Confidence            578899999999998543     335799999999886542 2111  11111 3 66777777743             


Q ss_pred             EEEEeCCCCE
Q psy12376         63 LTVYNHMTSK   72 (89)
Q Consensus        63 v~iwd~~~~~   72 (89)
                      |++|++.++.
T Consensus       210 v~~~~lgt~~  219 (693)
T 3iuj_A          210 VYFHRLGTAQ  219 (693)
T ss_dssp             EEEEETTSCG
T ss_pred             EEEEECCCCc
Confidence            9999997654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.04  E-value=0.0041  Score=38.27  Aligned_cols=68  Identities=9%  Similarity=0.004  Sum_probs=46.9

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      .+.+++++|+|+.+++...++.|.+||..++........+...+.+       .++++...++.|.+||......
T Consensus       151 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          151 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             SCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred             CceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence            4678999999998888777889999998776543322222121211       5667777788999999865443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.01  E-value=0.016  Score=37.32  Aligned_cols=70  Identities=11%  Similarity=-0.024  Sum_probs=44.0

Q ss_pred             EEEEEEccCCCEEEEE-eCCCcEEEEeCC--CC-e-----EeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCC
Q psy12376          7 IFLLQTSQVGQVLAIG-TARGNLTVYNHM--TS-K-----RVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         7 i~~~~~spdg~~la~g-~~~g~v~iwd~~--~~-~-----~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~   70 (89)
                      ...++|+|||+.|+.+ +.++.|.+|+..  +| +     .+..+.........       ++.++...++.|.+||. +
T Consensus       181 ~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~  259 (326)
T 2ghs_A          181 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-D  259 (326)
T ss_dssp             EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-T
T ss_pred             cCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-C
Confidence            5689999999876544 557899999975  55 3     12222222222211       56666666788999998 4


Q ss_pred             CEEEeee
Q psy12376         71 SKRVPVL   77 (89)
Q Consensus        71 ~~~~~~l   77 (89)
                      ++....+
T Consensus       260 g~~~~~i  266 (326)
T 2ghs_A          260 GNHIARY  266 (326)
T ss_dssp             CCEEEEE
T ss_pred             CCEEEEE
Confidence            5554444

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=96.97  E-value=0.0056  Score=41.85  Aligned_cols=69  Identities=12%  Similarity=0.066  Sum_probs=49.7

Q ss_pred             EEEEccCCCEEEEEe----------CCCcEEEEeCCCCeEeeEec-C-----------Ccceeec--cEEEEEeC--CCC
Q psy12376          9 LLQTSQVGQVLAIGT----------ARGNLTVYNHMTSKRVPVLG-K-----------HTNTIVG--QVLAIGTA--RGN   62 (89)
Q Consensus         9 ~~~~spdg~~la~g~----------~~g~v~iwd~~~~~~~~~~~-~-----------h~~~i~~--~~las~s~--d~~   62 (89)
                      .+++||||++|.++.          .++.|.++|..+++.+..+. +           |.-.+..  +++..+..  +++
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            799999999887765          46789999999998876653 1           1112222  55555543  678


Q ss_pred             EEEEeCCCCEEEeee
Q psy12376         63 LTVYNHMTSKRVPVL   77 (89)
Q Consensus        63 v~iwd~~~~~~~~~l   77 (89)
                      |.+.|+.+++.+..+
T Consensus       202 VsVID~~t~kvv~~I  216 (426)
T 3c75_H          202 VGVVDLEGKTFDRML  216 (426)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEEECCCCeEEEEE
Confidence            999999998877654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.94  E-value=0.0044  Score=43.64  Aligned_cols=54  Identities=17%  Similarity=0.279  Sum_probs=41.5

Q ss_pred             CCcEEEEeCCCCeEeeEecCC----cceee-c-cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376         25 RGNLTVYNHMTSKRVPVLGKH----TNTIV-G-QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus        25 ~g~v~iwd~~~~~~~~~~~~h----~~~i~-~-~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      +|.|..||..+|+.+......    ...+. . .+++.++.|+.++.||.++|+.+..+.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~  524 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence            688999999999987665321    22322 2 788889999999999999999887653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.92  E-value=0.013  Score=37.76  Aligned_cols=71  Identities=11%  Similarity=0.065  Sum_probs=51.4

Q ss_pred             EEEEEEccCCCEEEEEeCCC--cEEEEeCCCCeEeeEecCCcc----eeec---cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376          7 IFLLQTSQVGQVLAIGTARG--NLTVYNHMTSKRVPVLGKHTN----TIVG---QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g--~v~iwd~~~~~~~~~~~~h~~----~i~~---~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      ...+.|+ ++..+.+.+.+|  .|+++|..+|+.+..+.-...    .+..   .+.+....++.+.+||.++.+.+..+
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti  123 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF  123 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence            4689998 666666666665  999999999998776643221    1222   66666778999999999988877665


Q ss_pred             C
Q psy12376         78 G   78 (89)
Q Consensus        78 ~   78 (89)
                      .
T Consensus       124 ~  124 (262)
T 3nol_A          124 N  124 (262)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.88  E-value=0.016  Score=37.61  Aligned_cols=63  Identities=13%  Similarity=0.112  Sum_probs=45.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEeeEecCC---------cceeec------cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         15 VGQVLAIGTARGNLTVYNHMTSKRVPVLGKH---------TNTIVG------QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        15 dg~~la~g~~~g~v~iwd~~~~~~~~~~~~h---------~~~i~~------~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      ++..+.+++.++.|..+|..+|+.+......         ...+.+      ..+..++.++.|..+|.++|+.....
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~  129 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQT  129 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence            3567778888899999999999887655431         122222      67777888999999999888776543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=96.88  E-value=0.011  Score=37.63  Aligned_cols=73  Identities=14%  Similarity=0.107  Sum_probs=48.1

Q ss_pred             CCcEEE-EEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----cEEEEEeCCCCE-EEEeCCCCEEEee
Q psy12376          4 RYYIFL-LQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----QVLAIGTARGNL-TVYNHMTSKRVPV   76 (89)
Q Consensus         4 ~~~i~~-~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----~~las~s~d~~v-~iwd~~~~~~~~~   76 (89)
                      ...+.. +.|+ || .+++++.++.+.|| ..+++..... .+...+.+     .++++++.++.. .||.+. ++. ..
T Consensus       262 ~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~-g~~-~~  335 (347)
T 2gop_A          262 DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDEIVVYLKETATRLRELFTWD-GEE-KQ  335 (347)
T ss_dssp             CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEEEEESSSEEEEEECSSSCCEEEEES-SSE-EE
T ss_pred             CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEeeeeeCcEEEEEcCCCChHHheEeC-CcE-EE
Confidence            345775 9999 99 88999999999999 7766543333 34444443     467777777665 777776 543 33


Q ss_pred             eCCCCC
Q psy12376         77 LGKHTK   82 (89)
Q Consensus        77 l~~h~~   82 (89)
                      +-.|..
T Consensus       336 lt~~n~  341 (347)
T 2gop_A          336 LTDYND  341 (347)
T ss_dssp             CCCTTS
T ss_pred             eccccH
Confidence            445444

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=96.77  E-value=0.0095  Score=41.92  Aligned_cols=64  Identities=11%  Similarity=0.080  Sum_probs=46.9

Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcc---eeec---cEEEEEeCCCCEEEEeCC--CCEEEeee
Q psy12376         14 QVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTN---TIVG---QVLAIGTARGNLTVYNHM--TSKRVPVL   77 (89)
Q Consensus        14 pdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~---~i~~---~~las~s~d~~v~iwd~~--~~~~~~~l   77 (89)
                      |.+.++++...++.|.++|..+++.+..+.....   ...+   +++.+++.|+.|.+||+.  +++.+..+
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i  236 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI  236 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE
Confidence            4445777888899999999999988877653222   1112   788888999999999995  66665544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.75  E-value=0.012  Score=39.49  Aligned_cols=67  Identities=15%  Similarity=0.073  Sum_probs=47.4

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcce-ee-c---cEEEEEeCCC--CEEEEeCCCCE
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNT-IV-G---QVLAIGTARG--NLTVYNHMTSK   72 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~-i~-~---~~las~s~d~--~v~iwd~~~~~   72 (89)
                      ....++|+|+|+.+++...++.|++||..+++..........+ +. .   +.|+.+..++  .|.+|+...+.
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence            4789999999998888888899999999887765444332111 11 1   5677777665  78888876543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.68  E-value=0.01  Score=42.31  Aligned_cols=54  Identities=17%  Similarity=0.227  Sum_probs=41.5

Q ss_pred             CCcEEEEeCCCCeEeeEecCC----cceee-c-cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376         25 RGNLTVYNHMTSKRVPVLGKH----TNTIV-G-QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus        25 ~g~v~iwd~~~~~~~~~~~~h----~~~i~-~-~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      +|.|..||..+|+.+.....+    ...+. . .+++.++.|+.|++||.++++.+..+.
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~  496 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence            488999999999987665422    12222 2 788999999999999999998876653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=96.62  E-value=0.0074  Score=41.24  Aligned_cols=68  Identities=13%  Similarity=0.159  Sum_probs=49.4

Q ss_pred             EEEccCCCEEEEEeC----------CCcEEEEeCCCCeEeeEecCC--ccee--ec--c-EEEEEe-CCCCEEEEeCCCC
Q psy12376         10 LQTSQVGQVLAIGTA----------RGNLTVYNHMTSKRVPVLGKH--TNTI--VG--Q-VLAIGT-ARGNLTVYNHMTS   71 (89)
Q Consensus        10 ~~~spdg~~la~g~~----------~g~v~iwd~~~~~~~~~~~~h--~~~i--~~--~-~las~s-~d~~v~iwd~~~~   71 (89)
                      ++++|||+.+.+...          ++.|.++|..+++.+..+...  ...|  ..  + +++++. .++.|.++|..++
T Consensus       324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~  403 (426)
T 3c75_H          324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG  403 (426)
T ss_dssp             EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence            789999887666532          357999999999988776421  1122  21  5 666665 6999999999999


Q ss_pred             EEEeee
Q psy12376         72 KRVPVL   77 (89)
Q Consensus        72 ~~~~~l   77 (89)
                      +.+..+
T Consensus       404 kvv~tI  409 (426)
T 3c75_H          404 EELRSV  409 (426)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            988775

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.60  E-value=0.011  Score=42.24  Aligned_cols=67  Identities=19%  Similarity=0.195  Sum_probs=52.9

Q ss_pred             EEEEccCCCEEEEEeCCCc-------------------EEEEeCCCCeEeeEecC--Cc-------c-eeec--------
Q psy12376          9 LLQTSQVGQVLAIGTARGN-------------------LTVYNHMTSKRVPVLGK--HT-------N-TIVG--------   51 (89)
Q Consensus         9 ~~~~spdg~~la~g~~~g~-------------------v~iwd~~~~~~~~~~~~--h~-------~-~i~~--------   51 (89)
                      .++++|++..+..++.++.                   |..+|.++|+.+..++.  |.       . .+..        
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            5788998899999988864                   99999999999887653  32       1 1221        


Q ss_pred             -cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376         52 -QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus        52 -~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                       +.++.++.+|.++++|.++|+.+.
T Consensus       319 ~~~v~~~~~~G~l~~lD~~tG~~l~  343 (689)
T 1yiq_A          319 RKVLMQAPKNGFFYVIDRATGELLS  343 (689)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             EEEEEEECCCCeEEEEECCCCCEec
Confidence             378899999999999999998763

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.59  E-value=0.019  Score=40.78  Aligned_cols=67  Identities=9%  Similarity=0.065  Sum_probs=42.9

Q ss_pred             cEEEEEEccCCCEEEEEeC----CCcEEEEeCCCCe-EeeEecCCcce----eec---cEEEEEeCC---CCEEEEeCCC
Q psy12376          6 YIFLLQTSQVGQVLAIGTA----RGNLTVYNHMTSK-RVPVLGKHTNT----IVG---QVLAIGTAR---GNLTVYNHMT   70 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~----~g~v~iwd~~~~~-~~~~~~~h~~~----i~~---~~las~s~d---~~v~iwd~~~   70 (89)
                      ....+.|||||++|+....    +..|.++|..++. ....+..+...    +..   .+++....|   +.|..+|+.+
T Consensus       235 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~  314 (693)
T 3iuj_A          235 RYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAAN  314 (693)
T ss_dssp             SEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTS
T ss_pred             EEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            4678999999998876543    2489999987653 23444443332    221   455555444   5799999976


Q ss_pred             CE
Q psy12376         71 SK   72 (89)
Q Consensus        71 ~~   72 (89)
                      +.
T Consensus       315 ~~  316 (693)
T 3iuj_A          315 PG  316 (693)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.59  E-value=0.052  Score=33.45  Aligned_cols=68  Identities=12%  Similarity=0.047  Sum_probs=45.4

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEee-EecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVP-VLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~-~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      ..+.+++++++|..+++...++.|..||.. ++... .+......+.+       .++++...++.|..||. +++..
T Consensus        57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~  132 (299)
T 2z2n_A           57 AKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR  132 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             CceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence            358899999999988887778899999986 43321 11112222222       56666667888999998 55443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=96.57  E-value=0.013  Score=36.74  Aligned_cols=71  Identities=11%  Similarity=0.029  Sum_probs=45.8

Q ss_pred             EEEEEEc----cCCCEEEEE-eCCCcEEEEeCC-CCeE-----eeEecCCc-ceeec-------cEEEEEeCCCCEEEEe
Q psy12376          7 IFLLQTS----QVGQVLAIG-TARGNLTVYNHM-TSKR-----VPVLGKHT-NTIVG-------QVLAIGTARGNLTVYN   67 (89)
Q Consensus         7 i~~~~~s----pdg~~la~g-~~~g~v~iwd~~-~~~~-----~~~~~~h~-~~i~~-------~~las~s~d~~v~iwd   67 (89)
                      ...++|+    |+|+.|..+ ..++.|.+||.. +++.     ...+..+. .....       +++++...++.|.+||
T Consensus       174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d  253 (314)
T 1pjx_A          174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG  253 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEc
Confidence            5688999    999765444 567899999975 4542     22333332 22221       6777777888999999


Q ss_pred             CCCCEEEeee
Q psy12376         68 HMTSKRVPVL   77 (89)
Q Consensus        68 ~~~~~~~~~l   77 (89)
                      .++++....+
T Consensus       254 ~~~g~~~~~~  263 (314)
T 1pjx_A          254 PDGGQPKMRI  263 (314)
T ss_dssp             TTCBSCSEEE
T ss_pred             CCCCcEeEEE
Confidence            9755544433

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.56  E-value=0.056  Score=34.39  Aligned_cols=71  Identities=11%  Similarity=0.013  Sum_probs=50.3

Q ss_pred             EEEEEEccCCCEEEEEeCC--CcEEEEeCCCCeEeeEecCCcc----eeec---cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376          7 IFLLQTSQVGQVLAIGTAR--GNLTVYNHMTSKRVPVLGKHTN----TIVG---QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~--g~v~iwd~~~~~~~~~~~~h~~----~i~~---~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      ...+.|++ +..+.+.+.+  ..|..+|..+|+.+....-...    .+..   .+.+....++.+.+||.++.+.+..+
T Consensus        23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti  101 (243)
T 3mbr_X           23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARF  101 (243)
T ss_dssp             EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred             cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEE
Confidence            56899987 4455555554  4899999999998876642211    1222   66677788999999999988887765


Q ss_pred             C
Q psy12376         78 G   78 (89)
Q Consensus        78 ~   78 (89)
                      .
T Consensus       102 ~  102 (243)
T 3mbr_X          102 R  102 (243)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.55  E-value=0.031  Score=39.63  Aligned_cols=54  Identities=19%  Similarity=0.161  Sum_probs=41.4

Q ss_pred             CCCcEEEEeCCCCeEeeEec----CCcceee-c-cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         24 ARGNLTVYNHMTSKRVPVLG----KHTNTIV-G-QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        24 ~~g~v~iwd~~~~~~~~~~~----~h~~~i~-~-~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      ..|.+..||..+|+.+....    ...+++. + .+++.++.|+.|+.||.++|+.+...
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~  510 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKF  510 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence            35789999999999876653    1223333 3 78888999999999999999988755

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.48  E-value=0.064  Score=33.05  Aligned_cols=68  Identities=4%  Similarity=-0.050  Sum_probs=46.5

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeE-ecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPV-LGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~-~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      .+..++++|+|..+++...++.|.+||. +++.... .......+.+       +++++...++.|..||. +++...
T Consensus       100 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~  175 (299)
T 2z2n_A          100 APYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE  175 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE
T ss_pred             CceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE
Confidence            5789999999998888777889999998 5554332 2222222222       56666666788999998 565543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.39  E-value=0.021  Score=36.96  Aligned_cols=71  Identities=14%  Similarity=0.115  Sum_probs=51.3

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEe-cCCc--ceeec---cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVL-GKHT--NTIVG---QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~-~~h~--~~i~~---~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      ...+.|+. +..+.+.+.+|.|+++|..+|+.+..+ .+.-  ..+..   .+.+....++.+.+||.++.+.+..+.
T Consensus        57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~  133 (268)
T 3nok_A           57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR  133 (268)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred             cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence            46888874 556677777889999999999877665 2211  11222   667777889999999999988877653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=96.36  E-value=0.036  Score=35.15  Aligned_cols=65  Identities=9%  Similarity=-0.019  Sum_probs=42.8

Q ss_pred             cEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          6 YIFLLQTSQVGQ-VLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         6 ~i~~~~~spdg~-~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      ......|+|+|+ .++++..++.|..|+. +++. ..+..+...+..       +++++...++.|.+||.. ++.
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~  118 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA  118 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE
Confidence            357899999998 5677777899999998 4542 333222222222       556655566789999986 544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.34  E-value=0.03  Score=40.03  Aligned_cols=69  Identities=14%  Similarity=0.150  Sum_probs=53.5

Q ss_pred             EEEEccCCCEEEEEeCCC-------------------cEEEEeCCCCeEeeEecC--Cc--------ceeec--------
Q psy12376          9 LLQTSQVGQVLAIGTARG-------------------NLTVYNHMTSKRVPVLGK--HT--------NTIVG--------   51 (89)
Q Consensus         9 ~~~~spdg~~la~g~~~g-------------------~v~iwd~~~~~~~~~~~~--h~--------~~i~~--------   51 (89)
                      .++++|++..+..++.++                   .|..+|.++|+.+..++.  |.        .++..        
T Consensus       247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~  326 (677)
T 1kb0_A          247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKP  326 (677)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcE
Confidence            578899999998888775                   499999999998877653  31        12222        


Q ss_pred             -cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         52 -QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        52 -~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                       +.++.++.+|.|+++|.++|+.+...
T Consensus       327 ~~~l~~~~~~G~l~~lD~~tG~~l~~~  353 (677)
T 1kb0_A          327 RKVILHAPKNGFFFVLDRTNGKFISAK  353 (677)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             eeEEEEECCCCEEEEEECCCCCEeccc
Confidence             46888999999999999999887543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.25  E-value=0.051  Score=34.36  Aligned_cols=45  Identities=11%  Similarity=0.074  Sum_probs=36.0

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceee
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV   50 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~   50 (89)
                      ....++++++|...++....+.|.+||..+|+.+..+..+...+.
T Consensus       200 ~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t  244 (297)
T 3g4e_A          200 IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTT  244 (297)
T ss_dssp             EEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEE
T ss_pred             CCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCce
Confidence            467899999999888888888999999998988877765544343

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.06  E-value=0.0089  Score=40.01  Aligned_cols=41  Identities=10%  Similarity=0.042  Sum_probs=33.0

Q ss_pred             cEEEEEEccCCC-EEEEEe-CCCcEEEEeCCCCeEeeEecCCc
Q psy12376          6 YIFLLQTSQVGQ-VLAIGT-ARGNLTVYNHMTSKRVPVLGKHT   46 (89)
Q Consensus         6 ~i~~~~~spdg~-~la~g~-~~g~v~iwd~~~~~~~~~~~~h~   46 (89)
                      ....++|+|||+ .+++.. .++.|.++|+.+++.+..+....
T Consensus       315 ~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~  357 (368)
T 1mda_H          315 DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK  357 (368)
T ss_dssp             EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred             CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC
Confidence            467899999998 455555 58999999999999988876443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.04  E-value=0.043  Score=39.12  Aligned_cols=67  Identities=16%  Similarity=0.155  Sum_probs=52.0

Q ss_pred             EEEEccCCCEEEEEeCCCc-------------------EEEEeCCCCeEeeEecC--Cc-------c-eeec--------
Q psy12376          9 LLQTSQVGQVLAIGTARGN-------------------LTVYNHMTSKRVPVLGK--HT-------N-TIVG--------   51 (89)
Q Consensus         9 ~~~~spdg~~la~g~~~g~-------------------v~iwd~~~~~~~~~~~~--h~-------~-~i~~--------   51 (89)
                      .+++.|++..+..++.++.                   |..+|.++|+.+..++.  |.       . .+..        
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~  313 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP  313 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence            4688888888888887764                   99999999998877753  32       1 1211        


Q ss_pred             -cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376         52 -QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus        52 -~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                       +.++.++.+|.++++|.++|+.+.
T Consensus       314 ~~~v~~~~~~G~l~~lD~~tG~~l~  338 (668)
T 1kv9_A          314 RKVLMQAPKNGFFYVLDRTNGKLIS  338 (668)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             EEEEEEECCCCEEEEEECCCCCEec
Confidence             368899999999999999998773

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=95.92  E-value=0.12  Score=33.18  Aligned_cols=65  Identities=8%  Similarity=-0.097  Sum_probs=42.6

Q ss_pred             EEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          7 IFLLQTSQVGQ-VLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         7 i~~~~~spdg~-~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      ..+..|+|++. .++++..++.|.+||..+++.. .+.. ...+.+       +++++ +.+ .|.+||..+++...
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~~~v~~i~~~~dg~l~v~-~~~-gl~~~d~~~g~~~~  123 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTL  123 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC-CCcceEEEEeCCCeEEEE-ECC-CEEEEECCCCcEEE
Confidence            46889999754 6667777889999999887643 2221 122332       45554 444 49999998776543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.65  E-value=0.19  Score=30.92  Aligned_cols=67  Identities=4%  Similarity=0.039  Sum_probs=46.1

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeE-ecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPV-LGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~-~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~   73 (89)
                      ..+.+++++++|...++...++.|.+||.. ++.... +..+...+.+       +++++...++.|..||.. ++.
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            357899999999988887788999999987 654332 2222122222       566666667889999987 544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=95.65  E-value=0.076  Score=35.54  Aligned_cols=65  Identities=15%  Similarity=0.094  Sum_probs=43.1

Q ss_pred             EEEccCCCEEEEEeCCC--cEEEEeCCCCeEeeEe---cC-Ccceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376         10 LQTSQVGQVLAIGTARG--NLTVYNHMTSKRVPVL---GK-HTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus        10 ~~~spdg~~la~g~~~g--~v~iwd~~~~~~~~~~---~~-h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      ++|+|+|+.|+++..++  .|.+++..++.....+   .. ....+.+       ..|..+..++.|+.||..++...
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~  253 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT  253 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE
Confidence            89999999998888766  7999998765433333   11 1111111       34444777889999999876543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=95.61  E-value=0.025  Score=40.40  Aligned_cols=64  Identities=8%  Similarity=-0.072  Sum_probs=44.3

Q ss_pred             EEEEEEccCCCEEEEEe-CCCcEEEEeCCCCe------------EeeEecCCcceeec------cEEEEEeCCCCEEEEe
Q psy12376          7 IFLLQTSQVGQVLAIGT-ARGNLTVYNHMTSK------------RVPVLGKHTNTIVG------QVLAIGTARGNLTVYN   67 (89)
Q Consensus         7 i~~~~~spdg~~la~g~-~~g~v~iwd~~~~~------------~~~~~~~h~~~i~~------~~las~s~d~~v~iwd   67 (89)
                      .-++.+||||+++++.. .+..|.++|..+.+            .+.....-.++...      ....+...|+.|.+||
T Consensus       279 PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwd  358 (595)
T 1fwx_A          279 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWN  358 (595)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEE
Confidence            45799999999776655 47799999998642            22333322333221      4566778999999999


Q ss_pred             CCC
Q psy12376         68 HMT   70 (89)
Q Consensus        68 ~~~   70 (89)
                      +..
T Consensus       359 i~~  361 (595)
T 1fwx_A          359 IED  361 (595)
T ss_dssp             HHH
T ss_pred             hhH
Confidence            976

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.59  E-value=0.2  Score=30.81  Aligned_cols=68  Identities=7%  Similarity=0.022  Sum_probs=45.9

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeE-ecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPV-LGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~-~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      ..+.+++++++|..+++...++.|.+||.. ++.... +......+.+       +++++...++.|..||.. ++..
T Consensus        62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~  137 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY  137 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred             CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE
Confidence            357899999999988877778899999987 554322 2212222222       566666667889999987 5443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=95.46  E-value=0.11  Score=36.03  Aligned_cols=68  Identities=10%  Similarity=0.146  Sum_probs=47.7

Q ss_pred             EEEEccCCCEEEEEeCC------CcEEEEeCCCCeEeeEecCCcce------ee--c--cEEEEEe--------------
Q psy12376          9 LLQTSQVGQVLAIGTAR------GNLTVYNHMTSKRVPVLGKHTNT------IV--G--QVLAIGT--------------   58 (89)
Q Consensus         9 ~~~~spdg~~la~g~~~------g~v~iwd~~~~~~~~~~~~h~~~------i~--~--~~las~s--------------   58 (89)
                      .+..+|+| .+++...+      |.|.++|..+++.+..+..-..+      +.  -  +.+++..              
T Consensus       142 ~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~  220 (462)
T 2ece_A          142 TVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLE  220 (462)
T ss_dssp             EEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTT
T ss_pred             ceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchh
Confidence            45678999 66655555      78999999999988887522111      21  1  6666663              


Q ss_pred             -----CCCCEEEEeCCCCEEEeee
Q psy12376         59 -----ARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        59 -----~d~~v~iwd~~~~~~~~~l   77 (89)
                           .+..|.+||+.+++....+
T Consensus       221 ~~~~~~~d~V~v~D~~~~k~~~tI  244 (462)
T 2ece_A          221 HLKDRYGNRIHFWDLRKRKRIHSL  244 (462)
T ss_dssp             THHHHSCCEEEEEETTTTEEEEEE
T ss_pred             hhhhccCCEEEEEECCCCcEeeEE
Confidence                 3789999999888766654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=95.46  E-value=0.095  Score=33.87  Aligned_cols=71  Identities=10%  Similarity=0.111  Sum_probs=42.0

Q ss_pred             cEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCeEeeEecC-------Ccceeec-------cEEEEEeC-----CCCEE
Q psy12376          6 YIFLLQTSQVGQVLAIGT--ARGNLTVYNHMTSKRVPVLGK-------HTNTIVG-------QVLAIGTA-----RGNLT   64 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~--~~g~v~iwd~~~~~~~~~~~~-------h~~~i~~-------~~las~s~-----d~~v~   64 (89)
                      .+..++++|+|+.+++..  .++.+.||.+.+++.. .+..       +...+..       +++++-..     +..|.
T Consensus        18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~   96 (343)
T 2qe8_A           18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV   96 (343)
T ss_dssp             CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred             CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence            578999999999988864  2342444444356533 2211       1112221       44444333     57899


Q ss_pred             EEeCCCCEEEeee
Q psy12376         65 VYNHMTSKRVPVL   77 (89)
Q Consensus        65 iwd~~~~~~~~~l   77 (89)
                      +||+.+++.+..+
T Consensus        97 ~~d~~tg~~~~~~  109 (343)
T 2qe8_A           97 AWDTLNNQLSRVI  109 (343)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EEECCCCeEEEEE
Confidence            9999988866544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=95.19  E-value=0.15  Score=32.75  Aligned_cols=66  Identities=11%  Similarity=-0.041  Sum_probs=35.4

Q ss_pred             EccCCCEEEEEeCCCcEEEEeCCCCeEeeEecC--Ccce------eec---cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         12 TSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGK--HTNT------IVG---QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        12 ~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~--h~~~------i~~---~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      +++||+.|..+..++.|.++|..+.+.+..+.-  +..+      +.+   ..++....++.|.+-|..+++.+..+
T Consensus       112 lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I  188 (266)
T 2iwa_A          112 LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWI  188 (266)
T ss_dssp             EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEE
T ss_pred             EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEE
Confidence            445666555555566777777766665554431  1111      111   34455555666777777666655544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=95.15  E-value=0.14  Score=33.05  Aligned_cols=57  Identities=14%  Similarity=-0.013  Sum_probs=28.6

Q ss_pred             EEEeCCCcEEEEeCCCCeEeeEecC--Ccceeec--cEEEEEeCCCCEEEEeCCCCEEEee
Q psy12376         20 AIGTARGNLTVYNHMTSKRVPVLGK--HTNTIVG--QVLAIGTARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus        20 a~g~~~g~v~iwd~~~~~~~~~~~~--h~~~i~~--~~las~s~d~~v~iwd~~~~~~~~~   76 (89)
                      ++...++.+.+||..+++.+..+..  +...+..  +.|..+..++.|.++|.++.+....
T Consensus       110 ~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~  170 (268)
T 3nok_A          110 QLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGA  170 (268)
T ss_dssp             EEESSSCEEEEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEE
T ss_pred             EEEccCCEEEEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEE
Confidence            3444566666666666666555432  2222222  3333333455666666665554443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=95.08  E-value=0.36  Score=30.74  Aligned_cols=67  Identities=10%  Similarity=-0.016  Sum_probs=47.5

Q ss_pred             cCCcEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEeeEec--CCc--ceeec----cEEEEEeCCCCEEEEeCCC
Q psy12376          3 LRYYIFLLQTSQVGQ-VLAIGTARGNLTVYNHMTSKRVPVLG--KHT--NTIVG----QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         3 ~~~~i~~~~~spdg~-~la~g~~~g~v~iwd~~~~~~~~~~~--~h~--~~i~~----~~las~s~d~~v~iwd~~~   70 (89)
                      ..+.+..++|+|++. .+++...++.|...|.. ++.++.+.  +..  ..|..    .++++...++.+.++++..
T Consensus        25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred             cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            345699999999876 55567788899999997 88777653  221  12333    5556666778899998854

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=95.01  E-value=0.22  Score=31.21  Aligned_cols=60  Identities=12%  Similarity=0.076  Sum_probs=40.2

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec------cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         16 GQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG------QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        16 g~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~------~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      +..+.+++.++.+..+|.. ++...........+.+      ..+..++.++.|..+|.. ++.....
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~  172 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRF  172 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEE
Confidence            4567778888999999988 7665554433222221      556777888999999988 6554433

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=94.98  E-value=0.34  Score=29.92  Aligned_cols=73  Identities=11%  Similarity=0.028  Sum_probs=48.2

Q ss_pred             cEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCeEeeEecC--Ccceeec---cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376          6 YIFLLQTSQVGQVL-AIGTARGNLTVYNHMTSKRVPVLGK--HTNTIVG---QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus         6 ~i~~~~~spdg~~l-a~g~~~g~v~iwd~~~~~~~~~~~~--h~~~i~~---~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      ....++++|++..| ++-...+.|.++|..++.....+..  +...+..   .++++...++.|..+|..+++.+..+.
T Consensus       168 ~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            36789999987655 4555577999999875443332222  2122222   556666677899999998888777663

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=94.87  E-value=0.2  Score=31.35  Aligned_cols=66  Identities=11%  Similarity=0.022  Sum_probs=40.9

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec------cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376          8 FLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG------QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus         8 ~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~------~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      .++...++|. +.+++.++.+..+|.. ++.+..+......+.+      ..+..++  +.|..+| .+++......
T Consensus       140 ~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~  211 (330)
T 3hxj_A          140 ATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFY  211 (330)
T ss_dssp             SCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEEC
T ss_pred             eeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEc
Confidence            3455666776 5567778999999988 7766555432222222      4455555  8899999 5665554443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=94.86  E-value=0.21  Score=31.74  Aligned_cols=64  Identities=11%  Similarity=0.026  Sum_probs=30.8

Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCeEeeEecC--Ccce------eec---cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         14 QVGQVLAIGTARGNLTVYNHMTSKRVPVLGK--HTNT------IVG---QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        14 pdg~~la~g~~~g~v~iwd~~~~~~~~~~~~--h~~~------i~~---~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      +|+..|..+..++.|.++|..+.+.+..+.-  +..+      +.+   ..+|....+..|.+-|.++++++..+
T Consensus       112 ~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~i  186 (243)
T 3mbr_X          112 SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWI  186 (243)
T ss_dssp             ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEE
T ss_pred             eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEE
Confidence            4455554445555666666665555444322  1111      111   34444444555666666666655543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=94.83  E-value=0.35  Score=30.46  Aligned_cols=69  Identities=10%  Similarity=0.008  Sum_probs=40.1

Q ss_pred             EEEEEEccCCCEEEEEeCC------CcEEEEeCCCCeE--eeEec----CCcceeec---cEEEEEeCCCCEEEEeCCCC
Q psy12376          7 IFLLQTSQVGQVLAIGTAR------GNLTVYNHMTSKR--VPVLG----KHTNTIVG---QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~------g~v~iwd~~~~~~--~~~~~----~h~~~i~~---~~las~s~d~~v~iwd~~~~   71 (89)
                      ...++|+|||+.|..+...      +.|.+|+...+..  ...+.    +....+..   ..|..+..+ .|.+||.. +
T Consensus       190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~~-g  267 (305)
T 3dr2_A          190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDSD-G  267 (305)
T ss_dssp             EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS-EEEEECTT-S
T ss_pred             CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC-cEEEECCC-C
Confidence            4678999999987776654      7899999865431  11111    11112222   223334444 49999985 4


Q ss_pred             EEEeee
Q psy12376         72 KRVPVL   77 (89)
Q Consensus        72 ~~~~~l   77 (89)
                      +....+
T Consensus       268 ~~~~~~  273 (305)
T 3dr2_A          268 QLLGHI  273 (305)
T ss_dssp             CEEEEE
T ss_pred             CEEEEE
Confidence            444443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=94.67  E-value=0.24  Score=34.76  Aligned_cols=62  Identities=16%  Similarity=0.157  Sum_probs=44.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEeeEecCC---------cceeec-cEEEEEeC------CCCEEEEeCCCCEEEeee
Q psy12376         16 GQVLAIGTARGNLTVYNHMTSKRVPVLGKH---------TNTIVG-QVLAIGTA------RGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        16 g~~la~g~~~g~v~iwd~~~~~~~~~~~~h---------~~~i~~-~~las~s~------d~~v~iwd~~~~~~~~~l   77 (89)
                      +..+..++.++.+..+|..+|+.+......         ..++.. ..+..++.      ++.|+.+|.++|+.+...
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            567888889999999999999987765321         112222 45555544      799999999999887654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=94.64  E-value=0.17  Score=35.89  Aligned_cols=68  Identities=24%  Similarity=0.203  Sum_probs=46.7

Q ss_pred             EEEccCCCE----EEEEeCCCcEEEEeCCCCeEeeEecCCc---------ceeec-cEEEEEe------CCCCEEEEeCC
Q psy12376         10 LQTSQVGQV----LAIGTARGNLTVYNHMTSKRVPVLGKHT---------NTIVG-QVLAIGT------ARGNLTVYNHM   69 (89)
Q Consensus        10 ~~~spdg~~----la~g~~~g~v~iwd~~~~~~~~~~~~h~---------~~i~~-~~las~s------~d~~v~iwd~~   69 (89)
                      ++.+|.+..    ++.++.|+.+..+|..+|+.+.......         .++.. ..++.++      .++.|+.+|.+
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~  190 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVK  190 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETT
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECC
Confidence            344444444    7888899999999999999877653211         12222 4555554      38999999999


Q ss_pred             CCEEEeee
Q psy12376         70 TSKRVPVL   77 (89)
Q Consensus        70 ~~~~~~~l   77 (89)
                      +|+.+-..
T Consensus       191 TG~~~W~~  198 (599)
T 1w6s_A          191 TGEQVWRA  198 (599)
T ss_dssp             TCCEEEEE
T ss_pred             CCcEEEEE
Confidence            99887654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=94.58  E-value=0.43  Score=33.60  Aligned_cols=69  Identities=7%  Similarity=0.021  Sum_probs=50.4

Q ss_pred             EEEEccCCCEEEEEeC--------------------C----CcEEEEeCCCCeEeeEecC--Cc--------ceeec---
Q psy12376          9 LLQTSQVGQVLAIGTA--------------------R----GNLTVYNHMTSKRVPVLGK--HT--------NTIVG---   51 (89)
Q Consensus         9 ~~~~spdg~~la~g~~--------------------~----g~v~iwd~~~~~~~~~~~~--h~--------~~i~~---   51 (89)
                      ..++.|+...+..++.                    |    +.|..+|..+|+.+..++.  |.        .++..   
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~  329 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYK  329 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeee
Confidence            3567777777776663                    2    6899999999999887642  31        23322   


Q ss_pred             -------cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         52 -------QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        52 -------~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                             ..++.++.+|.++++|.++|+.+...
T Consensus       330 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~  362 (582)
T 1flg_A          330 AKDGKIVKATAHADRNGFFYVVDRSNGKLQNAF  362 (582)
T ss_dssp             CSSSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cCCCCEEEEEEEECCCceEEEEECCCCCEeccc
Confidence                   26888999999999999999877543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=94.25  E-value=0.23  Score=31.95  Aligned_cols=67  Identities=12%  Similarity=0.088  Sum_probs=44.9

Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecC--Ccce------eec---cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         11 QTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGK--HTNT------IVG---QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        11 ~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~--h~~~------i~~---~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      .+++||+.|..+..++.|.++|..+.+.+..+.-  ...+      +.+   .++|....+..|.+-|.++++++..+
T Consensus       131 glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~I  208 (262)
T 3nol_A          131 GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGII  208 (262)
T ss_dssp             CEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEE
T ss_pred             EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence            3446777776666677888888888777665432  1112      222   56666667888889999888887765

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=93.54  E-value=0.32  Score=35.08  Aligned_cols=66  Identities=8%  Similarity=0.043  Sum_probs=41.1

Q ss_pred             cEEEEEEc-cCCCEEEEEeC-CC----cEEEEeCCCC-eEeeE-ecC-Ccceeec---cEEEEEeCC-----CCEEEEeC
Q psy12376          6 YIFLLQTS-QVGQVLAIGTA-RG----NLTVYNHMTS-KRVPV-LGK-HTNTIVG---QVLAIGTAR-----GNLTVYNH   68 (89)
Q Consensus         6 ~i~~~~~s-pdg~~la~g~~-~g----~v~iwd~~~~-~~~~~-~~~-h~~~i~~---~~las~s~d-----~~v~iwd~   68 (89)
                      .+...+|| |||++||.+.. +|    .|+++|+.+| +.+.. +.. ......+   +.|+....|     ..|+.+++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l  254 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM  254 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence            46789999 99999886554 33    4999999988 63211 111 1122222   455555554     35888888


Q ss_pred             CCC
Q psy12376         69 MTS   71 (89)
Q Consensus        69 ~~~   71 (89)
                      .++
T Consensus       255 gt~  257 (751)
T 2xe4_A          255 GKL  257 (751)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            765

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.41  E-value=0.98  Score=29.96  Aligned_cols=58  Identities=14%  Similarity=0.106  Sum_probs=42.7

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEeeEecCC--cceeec--------cEEEEE--eCCCCEEEEeCCCCEEE
Q psy12376         17 QVLAIGTARGNLTVYNHMTSKRVPVLGKH--TNTIVG--------QVLAIG--TARGNLTVYNHMTSKRV   74 (89)
Q Consensus        17 ~~la~g~~~g~v~iwd~~~~~~~~~~~~h--~~~i~~--------~~las~--s~d~~v~iwd~~~~~~~   74 (89)
                      ..++.++.||.|.-+|..+|+.+..+...  ...+..        ..+..+  +.||.|+.+|..+|...
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~   80 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK   80 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE
Confidence            37889999999999999999998887643  122321        134333  68999999999887554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=93.11  E-value=0.7  Score=32.62  Aligned_cols=67  Identities=16%  Similarity=0.291  Sum_probs=45.7

Q ss_pred             EEEEccCCCEEEEEeC-CCcEEEEeCCCCeEeeE--ec----CCcceee-c-cEEEEEe-CC-----CCEEEEeCCCCEE
Q psy12376          9 LLQTSQVGQVLAIGTA-RGNLTVYNHMTSKRVPV--LG----KHTNTIV-G-QVLAIGT-AR-----GNLTVYNHMTSKR   73 (89)
Q Consensus         9 ~~~~spdg~~la~g~~-~g~v~iwd~~~~~~~~~--~~----~h~~~i~-~-~~las~s-~d-----~~v~iwd~~~~~~   73 (89)
                      ++++.++|+.++.|+. +..+.+||..+++....  +.    .|...+. . ++++.|+ .+     ..+.+||..++..
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            4677899999999884 55899999887653221  11    1222232 2 7888888 44     5799999988776


Q ss_pred             Ee
Q psy12376         74 VP   75 (89)
Q Consensus        74 ~~   75 (89)
                      ..
T Consensus       327 ~~  328 (656)
T 1k3i_A          327 TS  328 (656)
T ss_dssp             EE
T ss_pred             ee
Confidence            54

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=91.84  E-value=1.2  Score=31.36  Aligned_cols=68  Identities=19%  Similarity=0.243  Sum_probs=44.0

Q ss_pred             EEEEcc-CCCEEEEEeCCC-----------cEEEEeCCCCeE--eeEec-C---Ccceee--c--cEEEEEe-CCCCEEE
Q psy12376          9 LLQTSQ-VGQVLAIGTARG-----------NLTVYNHMTSKR--VPVLG-K---HTNTIV--G--QVLAIGT-ARGNLTV   65 (89)
Q Consensus         9 ~~~~sp-dg~~la~g~~~g-----------~v~iwd~~~~~~--~~~~~-~---h~~~i~--~--~~las~s-~d~~v~i   65 (89)
                      .+++.| +|+.++.|+.+.           .+.+||..+++.  +..+. .   |...+.  .  ++++.|+ .+..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            567777 888888887543           588999987653  22221 1   111111  1  7888887 4568999


Q ss_pred             EeCCCCEEEee
Q psy12376         66 YNHMTSKRVPV   76 (89)
Q Consensus        66 wd~~~~~~~~~   76 (89)
                      ||..+++....
T Consensus       270 yd~~t~~W~~~  280 (656)
T 1k3i_A          270 YDSSSDSWIPG  280 (656)
T ss_dssp             EEGGGTEEEEC
T ss_pred             ecCcCCceeEC
Confidence            99987766543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=91.58  E-value=2.7  Score=31.44  Aligned_cols=26  Identities=23%  Similarity=0.231  Sum_probs=23.2

Q ss_pred             cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         52 QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        52 ~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      .++++-+.|++++|||+.+++++...
T Consensus       248 ~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          248 NVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             TEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             cEEEEEECCCEEEEEECCCCCeEeee
Confidence            58999999999999999999987754

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.06  E-value=2.5  Score=32.14  Aligned_cols=26  Identities=23%  Similarity=0.231  Sum_probs=23.3

Q ss_pred             cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         52 QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        52 ~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      .++++-+.|++++|||+.+++++...
T Consensus       250 ~~lftL~~D~~LRiWsl~t~~~v~t~  275 (1139)
T 4fhn_B          250 NVLVMLSLDYKLKVLDLSTNQCVETI  275 (1139)
T ss_dssp             TEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred             cEEEEEeCCCEEEEEECCCCCeEEee
Confidence            68999999999999999999987753

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.95  E-value=1.1  Score=33.45  Aligned_cols=36  Identities=19%  Similarity=0.085  Sum_probs=31.8

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeE
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPV   41 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~   41 (89)
                      .+.++...++..++.+-+.|+++++|+..+++++..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t  272 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET  272 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence            477888888989999999999999999999988664

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=89.75  E-value=2.5  Score=26.58  Aligned_cols=68  Identities=7%  Similarity=0.051  Sum_probs=41.2

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecC--Ccceeec----cEEEEEeCCC--CEEEEeCCCCEEE
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGK--HTNTIVG----QVLAIGTARG--NLTVYNHMTSKRV   74 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~--h~~~i~~----~~las~s~d~--~v~iwd~~~~~~~   74 (89)
                      ....++|+|+|+.+++...++.|..||..++ ....+..  +...+..    +++++.....  .|..+|..+++..
T Consensus        33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~  108 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  108 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence            4678999999997777778899999998754 3332221  1111111    4444443322  3666776666654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=89.64  E-value=0.78  Score=30.43  Aligned_cols=56  Identities=16%  Similarity=0.235  Sum_probs=41.3

Q ss_pred             eCCCcEEEEeCCCCeEeeEecC----Ccceee--------------c-cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376         23 TARGNLTVYNHMTSKRVPVLGK----HTNTIV--------------G-QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus        23 ~~~g~v~iwd~~~~~~~~~~~~----h~~~i~--------------~-~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      +.||.+..++..+|.....+..    ...++.              . ..+.+|+.++.+..-|.++|+.+....
T Consensus        64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             CCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            6899999999988865433321    122222              3 677899999999999999999888764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=89.40  E-value=2.5  Score=25.91  Aligned_cols=64  Identities=9%  Similarity=0.036  Sum_probs=38.5

Q ss_pred             EEEEEEccCCCEE-EEEeCCCcEEEEeCCCCeEeeEecCC-cc--ee--ec---cEEEEEeCCCCEEEEeCCC
Q psy12376          7 IFLLQTSQVGQVL-AIGTARGNLTVYNHMTSKRVPVLGKH-TN--TI--VG---QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         7 i~~~~~spdg~~l-a~g~~~g~v~iwd~~~~~~~~~~~~h-~~--~i--~~---~~las~s~d~~v~iwd~~~   70 (89)
                      +..++|+|++..| ++...++.|.+++..++.....+... ..  .+  ..   .++++-..++.|.+++...
T Consensus        38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g  110 (267)
T 1npe_A           38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC
Confidence            5689999976555 45555789999998765432222211 11  11  11   4555556667788888754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=89.38  E-value=4.6  Score=28.99  Aligned_cols=70  Identities=16%  Similarity=0.179  Sum_probs=46.5

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecC----Ccceeec------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGK----HTNTIVG------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~----h~~~i~~------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      ..|.++...++|..|-+|+.++.+.+||..+++.......    ....|.+      ..|-.|+. +.|.+||..+++..
T Consensus       406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~  484 (795)
T 4a2l_A          406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFT  484 (795)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEE
T ss_pred             ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEE
Confidence            4588999999998677788888899999988764332211    1233443      33444445 56999999877654


Q ss_pred             e
Q psy12376         75 P   75 (89)
Q Consensus        75 ~   75 (89)
                      .
T Consensus       485 ~  485 (795)
T 4a2l_A          485 T  485 (795)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=89.35  E-value=1.5  Score=27.80  Aligned_cols=32  Identities=9%  Similarity=0.004  Sum_probs=26.4

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR   38 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~   38 (89)
                      ..+++|+++|..+.++..++.|..||..+++.
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~   52 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF   52 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCE
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCce
Confidence            46789999998778888899999999876543

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=88.98  E-value=3.6  Score=30.25  Aligned_cols=72  Identities=14%  Similarity=0.124  Sum_probs=46.7

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeE---------------ecC-----Ccceeec-----cEEEEEe
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPV---------------LGK-----HTNTIVG-----QVLAIGT   58 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~---------------~~~-----h~~~i~~-----~~las~s   58 (89)
                      +.+-..++-+++  .++++-.||.+.-.+.........               +.+     ....|.|     .++++-+
T Consensus       161 R~Ph~L~avs~~--~liVsL~DGGLLrL~r~~~~d~~~~~Fnd~s~l~SL~~lf~~~~~~~~~~~Is~~~~~~~fLftL~  238 (729)
T 3f7f_A          161 RVPHFLFYVSPQ--FSVVFLEDGGLLGLKKVDGVHYEPLLFNDNSYLKCLTRFFSRSSKSDYDSVISCKLFHERYLIVLT  238 (729)
T ss_dssp             SCEEEEEECSSS--BEEEEETTSCEECCEESSSSCEECCCCCCCGGGGGGSTTCCTTCSSCCCCEEEEEEETTTEEEEEE
T ss_pred             cCCcEEEEECCC--eEEEEEcCCCEEEEEeccCCCcceeeecCCchhhhhHHhhcCCCCCCcCceEEEeccCCcEEEEEE
Confidence            344555666654  378888888887777543321111               111     1123444     7899999


Q ss_pred             CCCCEEEEeCCCCEEEeee
Q psy12376         59 ARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        59 ~d~~v~iwd~~~~~~~~~l   77 (89)
                      .|.++++||+++++++...
T Consensus       239 ~Dh~LRiWsL~t~~lv~t~  257 (729)
T 3f7f_A          239 QNCHLKIWDLTSFTLIQDY  257 (729)
T ss_dssp             TTCEEEEEETTTTEEEEEE
T ss_pred             cCCeEEEEEcCCCceEEee
Confidence            9999999999999977654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=88.96  E-value=3  Score=26.26  Aligned_cols=66  Identities=15%  Similarity=0.142  Sum_probs=40.3

Q ss_pred             cEEEEEEccCCCEEEEEeCCC--cEEEEeCCCCeEeeEec-CCcc---eee--c--cEEEEEeCCCCEEEEeCCCC
Q psy12376          6 YIFLLQTSQVGQVLAIGTARG--NLTVYNHMTSKRVPVLG-KHTN---TIV--G--QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g--~v~iwd~~~~~~~~~~~-~h~~---~i~--~--~~las~s~d~~v~iwd~~~~   71 (89)
                      ....++++|+|+.+++.....  .|..+|..+++...... ....   .+.  .  ..+++-..++.|+++|...+
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence            467899999999766654432  47778877776533221 1111   111  1  34555556888999998654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=87.51  E-value=6.2  Score=28.43  Aligned_cols=30  Identities=10%  Similarity=0.187  Sum_probs=23.5

Q ss_pred             EEEEEEccCCCEEEEEeC---CCcEEEEeCCCC
Q psy12376          7 IFLLQTSQVGQVLAIGTA---RGNLTVYNHMTS   36 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~---~g~v~iwd~~~~   36 (89)
                      ...+.|||||++|+..+.   ...|.++|..++
T Consensus       273 ~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          273 SAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            567899999999887663   347888898765

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=87.37  E-value=6  Score=30.39  Aligned_cols=65  Identities=14%  Similarity=0.073  Sum_probs=45.6

Q ss_pred             CCcEEEEEEccC------CCEEEEEeC-CCcEEEEeCCCCeEeeE--ecCCcceeec---------cEEEEEeCCCCEEE
Q psy12376          4 RYYIFLLQTSQV------GQVLAIGTA-RGNLTVYNHMTSKRVPV--LGKHTNTIVG---------QVLAIGTARGNLTV   65 (89)
Q Consensus         4 ~~~i~~~~~spd------g~~la~g~~-~g~v~iwd~~~~~~~~~--~~~h~~~i~~---------~~las~s~d~~v~i   65 (89)
                      .+.|+|+++.|.      +.++|+|.+ |++++|++..+.+.+..  +... ...++         .+|..|-.||.+.-
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~~L~igl~dG~l~~  631 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSHYLLCALGDGALFY  631 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence            467999999874      369999997 99999999987665432  2211 11111         57889999998866


Q ss_pred             EeCC
Q psy12376         66 YNHM   69 (89)
Q Consensus        66 wd~~   69 (89)
                      +.+.
T Consensus       632 ~~~d  635 (1158)
T 3ei3_A          632 FGLN  635 (1158)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            6553

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=85.31  E-value=1.1  Score=34.07  Aligned_cols=35  Identities=20%  Similarity=0.105  Sum_probs=29.7

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeE
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPV   41 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~   41 (89)
                      +.+++..++..++.+=+.|+++++|+..+++++..
T Consensus       240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t  274 (1139)
T 4fhn_B          240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET  274 (1139)
T ss_dssp             BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred             eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence            45566778888999999999999999999987654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=85.19  E-value=8.6  Score=27.65  Aligned_cols=71  Identities=11%  Similarity=0.114  Sum_probs=45.6

Q ss_pred             EEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEeeEec-----CCcceee--c-cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376          7 IFLLQTSQVGQ-VLAIGTARGNLTVYNHMTSKRVPVLG-----KHTNTIV--G-QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus         7 i~~~~~spdg~-~la~g~~~g~v~iwd~~~~~~~~~~~-----~h~~~i~--~-~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      ...|+|+|++. ++++-+..+.|.+++.........+.     .|...|.  . .++++....+.|..+|..+++.+..+
T Consensus       542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             ccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEe
Confidence            45799999755 55555567789999986432222221     1222222  2 66777778889999998888776665

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=84.67  E-value=5.6  Score=28.53  Aligned_cols=30  Identities=7%  Similarity=-0.105  Sum_probs=23.8

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMT   35 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~   35 (89)
                      ....++|+|+|...++---|++|.+||+..
T Consensus       332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            468899999994444556699999999876

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=84.61  E-value=4.8  Score=27.96  Aligned_cols=66  Identities=11%  Similarity=0.186  Sum_probs=44.3

Q ss_pred             c--cCCCEEEE-EeCCCcEEEEeCCCC----eEeeEec--------CCcc--eeec---cEEEEEeCC------CCEEEE
Q psy12376         13 S--QVGQVLAI-GTARGNLTVYNHMTS----KRVPVLG--------KHTN--TIVG---QVLAIGTAR------GNLTVY   66 (89)
Q Consensus        13 s--pdg~~la~-g~~~g~v~iwd~~~~----~~~~~~~--------~h~~--~i~~---~~las~s~d------~~v~iw   66 (89)
                      +  +++++|.+ +-.++.|.++|..+.    +....+.        +...  .+.|   .+++++..+      +.|.+.
T Consensus        90 ~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           90 KPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEE
T ss_pred             CCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEE
Confidence            7  88887765 555789999998755    4444442        1111  1233   566666665      789999


Q ss_pred             eCCCCEEEeeeC
Q psy12376         67 NHMTSKRVPVLG   78 (89)
Q Consensus        67 d~~~~~~~~~l~   78 (89)
                      |.++++.+....
T Consensus       170 D~~T~~v~~~~~  181 (462)
T 2ece_A          170 DHYSFEPLGKWE  181 (462)
T ss_dssp             CTTTCCEEEECC
T ss_pred             ECCCCeEEEEEc
Confidence            999888887664

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=83.83  E-value=9.9  Score=27.26  Aligned_cols=71  Identities=21%  Similarity=0.299  Sum_probs=47.8

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecC--------Ccceeec------cE-EEEEeCCCCEEEEeCC
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGK--------HTNTIVG------QV-LAIGTARGNLTVYNHM   69 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~--------h~~~i~~------~~-las~s~d~~v~iwd~~   69 (89)
                      ..|.++...++|.. -+|+.++.|..||..+++.......        ....|.+      .. |-.|+.++.|..||..
T Consensus       357 ~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~  435 (795)
T 4a2l_A          357 NVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRN  435 (795)
T ss_dssp             SSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred             CeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCC
Confidence            35889999998864 4578888899999887654332211        1233443      33 7777887889999998


Q ss_pred             CCEEEee
Q psy12376         70 TSKRVPV   76 (89)
Q Consensus        70 ~~~~~~~   76 (89)
                      +++....
T Consensus       436 ~~~~~~~  442 (795)
T 4a2l_A          436 SGQVENF  442 (795)
T ss_dssp             TCCEEEE
T ss_pred             CCcEEEe
Confidence            7765443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=83.81  E-value=4.7  Score=27.96  Aligned_cols=64  Identities=11%  Similarity=0.173  Sum_probs=43.4

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCe------------EeeEec--C----Ccceeec----------cEEEEE
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSK------------RVPVLG--K----HTNTIVG----------QVLAIG   57 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~------------~~~~~~--~----h~~~i~~----------~~las~   57 (89)
                      .+..+..||+|.+||.-+ +..|.|-....+.            ..+.+.  .    ...+|..          ..|+.=
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            467899999999999975 5578887776221            011121  0    1233433          578888


Q ss_pred             eCCCCEEEEeCCC
Q psy12376         58 TARGNLTVYNHMT   70 (89)
Q Consensus        58 s~d~~v~iwd~~~   70 (89)
                      ..|+.|++||+..
T Consensus       146 tsD~~Ir~yDl~~  158 (452)
T 3pbp_A          146 KEDDTITMFDILN  158 (452)
T ss_dssp             ETTSCEEEEETTC
T ss_pred             ecCCEEEEEEccc
Confidence            9999999999964

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=83.31  E-value=6.1  Score=24.84  Aligned_cols=36  Identities=6%  Similarity=0.046  Sum_probs=26.0

Q ss_pred             EEEEEEccCCCEEEEEeC----------CCcEEEEeCCCCeEeeEec
Q psy12376          7 IFLLQTSQVGQVLAIGTA----------RGNLTVYNHMTSKRVPVLG   43 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~----------~g~v~iwd~~~~~~~~~~~   43 (89)
                      ...+++.++|...++...          .+.|.++|.. |+.+..+.
T Consensus       231 P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~  276 (322)
T 2fp8_A          231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIP  276 (322)
T ss_dssp             EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEE
T ss_pred             CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEE
Confidence            567899999986666544          4678899874 66666554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=83.30  E-value=2.5  Score=29.35  Aligned_cols=32  Identities=6%  Similarity=0.120  Sum_probs=27.9

Q ss_pred             CCcEEEEEEccCC---CEEEEEeCCCcEEEEeCCC
Q psy12376          4 RYYIFLLQTSQVG---QVLAIGTARGNLTVYNHMT   35 (89)
Q Consensus         4 ~~~i~~~~~spdg---~~la~g~~~g~v~iwd~~~   35 (89)
                      +.+|..+.|+|-|   ..|++=+.|+.|++||+..
T Consensus       124 ~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          124 KSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             CCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             CCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence            4569999999965   5899999999999999975

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=81.39  E-value=3.5  Score=27.32  Aligned_cols=33  Identities=15%  Similarity=0.168  Sum_probs=26.7

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR   38 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~   38 (89)
                      ..+.++|.|||..+++--..|.|.+++..+++.
T Consensus        33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~   65 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK   65 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             CceEEEEcCCCcEEEEEecCCEEEEEECCCCcE
Confidence            468999999999887776689999998766553

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=80.51  E-value=9.1  Score=24.58  Aligned_cols=67  Identities=13%  Similarity=-0.028  Sum_probs=40.7

Q ss_pred             EEEEEEccCCCEE-EEEeCCCcEEEEeCCCCeEeeEec---CCcceeec---cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          7 IFLLQTSQVGQVL-AIGTARGNLTVYNHMTSKRVPVLG---KHTNTIVG---QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         7 i~~~~~spdg~~l-a~g~~~g~v~iwd~~~~~~~~~~~---~h~~~i~~---~~las~s~d~~v~iwd~~~~~~   73 (89)
                      ...++|+|++..| .+-+..+.|..+|...........   .|...+..   .++.+-...+.|..+|..+++.
T Consensus       168 Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          168 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred             ccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCc
Confidence            5789999966655 444557789999986432212222   12222221   5666666778888888866553

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=80.36  E-value=6.1  Score=29.08  Aligned_cols=34  Identities=12%  Similarity=0.018  Sum_probs=27.2

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeE
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPV   41 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~   41 (89)
                      .|.++.+  +..++++=+.|+++++|+.++++++..
T Consensus       223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t  256 (729)
T 3f7f_A          223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQD  256 (729)
T ss_dssp             EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEe
Confidence            3565555  467999999999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	89
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.8
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.73
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.71
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.69
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.69
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.68
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.67
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.67
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.67
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.67
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.66
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.65
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.65
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.63
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.63
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.62
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.6
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.6
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.56
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.53
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.52
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.52
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.48
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.47
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.41
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.4
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.39
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.27
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.26
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.22
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.21
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.04
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.03
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.03
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.85
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.82
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.8
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.69
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.49
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.49
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.47
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.43
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.42
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.31
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.31
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.25
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.93
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.74
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.68
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	96.35
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	95.6
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	95.53
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	95.51
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.35
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.03
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	94.84
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	94.71
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	94.49
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.41
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	94.2
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	93.99
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	93.73
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.56
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	92.93
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	92.54
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	92.44
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	92.42
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	92.09
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	91.87
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.69
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	89.94
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	89.91
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	89.91
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	89.03
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.06
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	86.88
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	86.2
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	85.38
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	84.16
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	83.53
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	81.72
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	80.78
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	80.36

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=2.2e-19  Score=117.34  Aligned_cols=85  Identities=22%  Similarity=0.318  Sum_probs=75.4

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCc---EEEEeCCCCeEeeEec-------------CCcceeec-------cEEEEEe
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGN---LTVYNHMTSKRVPVLG-------------KHTNTIVG-------QVLAIGT   58 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~---v~iwd~~~~~~~~~~~-------------~h~~~i~~-------~~las~s   58 (89)
                      +|.++|.+++|||||++|++|+.|++   |++||.++++.+..+.             +|.+.|.+       ++|+|||
T Consensus       229 ~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s  308 (393)
T d1sq9a_         229 NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG  308 (393)
T ss_dssp             CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred             cccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC
Confidence            47788999999999999999998874   9999999988776653             68888877       7999999


Q ss_pred             CCCCEEEEeCCCCEEEeeeCCCCCCCcC
Q psy12376         59 ARGNLTVYNHMTSKRVPVLGKHTKSKPS   86 (89)
Q Consensus        59 ~d~~v~iwd~~~~~~~~~l~~h~~~~~~   86 (89)
                      .|++|+|||+++++++..+.+|...+..
T Consensus       309 ~D~~v~vWd~~~g~~~~~l~gH~~~v~~  336 (393)
T d1sq9a_         309 WDGKLRFWDVKTKERITTLNMHCDDIEI  336 (393)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCGGGCSS
T ss_pred             CCCEEEEEECCCCCEEEEECCcCCcccC
Confidence            9999999999999999999999887653

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=3.9e-17  Score=100.77  Aligned_cols=83  Identities=13%  Similarity=0.129  Sum_probs=71.8

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec------------------------------
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG------------------------------   51 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~------------------------------   51 (89)
                      +|.++|++++|+|++++||+|+.||.|+|||..+++.+..+.+|...|.+                              
T Consensus        15 GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (317)
T d1vyhc1          15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI   94 (317)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE
T ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccc
Confidence            58889999999999999999999999999999999888888877765543                              


Q ss_pred             -------------------cEEEEEeCCCCEEEEeCCCCEEEeeeCCCCCCC
Q psy12376         52 -------------------QVLAIGTARGNLTVYNHMTSKRVPVLGKHTKSK   84 (89)
Q Consensus        52 -------------------~~las~s~d~~v~iwd~~~~~~~~~l~~h~~~~   84 (89)
                                         +++++++.|+.+.+||+++++....+.+|...+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  146 (317)
T d1vyhc1          95 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV  146 (317)
T ss_dssp             ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             cccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcc
Confidence                               568899999999999998888888887777654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=3.6e-17  Score=106.01  Aligned_cols=81  Identities=16%  Similarity=0.167  Sum_probs=69.0

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCe--EeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSK--RVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~--~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      .++|+|++|||||++||+|+.||.|++||..+++  .+..+.+|.++|.+       ++|++|+.|++|+|||+.++...
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            4789999999999999999999999999998775  56678899999987       89999999999999999876644


Q ss_pred             e--eeCCCCCCC
Q psy12376         75 P--VLGKHTKSK   84 (89)
Q Consensus        75 ~--~l~~h~~~~   84 (89)
                      .  .+.+|...+
T Consensus        87 ~~~~~~~~~~~v   98 (371)
T d1k8kc_          87 PTLVILRINRAA   98 (371)
T ss_dssp             EEEECCCCSSCE
T ss_pred             cccccccccccc
Confidence            3  446676654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=1.5e-16  Score=101.95  Aligned_cols=83  Identities=20%  Similarity=0.221  Sum_probs=70.7

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecC------------------Ccceeec-------cEEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGK------------------HTNTIVG-------QVLAI   56 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~------------------h~~~i~~-------~~las   56 (89)
                      +|.+.|++|+|||||++||+|+ |+.|+|||+.+++.+..+..                  |...|.+       ++|++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            4788999999999999999987 89999999999887766543                  3334554       79999


Q ss_pred             EeCCCCEEEEeCCCCEEEeeeCCCCCCCc
Q psy12376         57 GTARGNLTVYNHMTSKRVPVLGKHTKSKP   85 (89)
Q Consensus        57 ~s~d~~v~iwd~~~~~~~~~l~~h~~~~~   85 (89)
                      |+.|+.|++||...++......+|...+.
T Consensus       139 ~~~dg~v~i~~~~~~~~~~~~~~h~~~v~  167 (388)
T d1erja_         139 GAEDRLIRIWDIENRKIVMILQGHEQDIY  167 (388)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             ccccccccccccccccccccccccccccc
Confidence            99999999999999999998988887754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=2.3e-16  Score=98.15  Aligned_cols=84  Identities=19%  Similarity=0.252  Sum_probs=71.2

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEee-EecCCcceeec-----------------cEEEEEeCCCCEE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVP-VLGKHTNTIVG-----------------QVLAIGTARGNLT   64 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~-~~~~h~~~i~~-----------------~~las~s~d~~v~   64 (89)
                      +..++++++|+|+|++|++|+.||.|++||..+++... .+.+|..+|.+                 .+|++|+.|++|+
T Consensus       161 ~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~  240 (287)
T d1pgua2         161 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF  240 (287)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred             cCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEE
Confidence            45679999999999999999999999999999887654 45678877665                 5899999999999


Q ss_pred             EEeCCC-CEEEeeeCCCCCCCcC
Q psy12376         65 VYNHMT-SKRVPVLGKHTKSKPS   86 (89)
Q Consensus        65 iwd~~~-~~~~~~l~~h~~~~~~   86 (89)
                      |||++. ++....+.+|...+.+
T Consensus       241 iw~~~~~~~~~~~~~~h~~~V~~  263 (287)
T d1pgua2         241 IYSVKRPMKIIKALNAHKDGVNN  263 (287)
T ss_dssp             EEESSCTTCCEEETTSSTTCEEE
T ss_pred             EEECCCCCeEEEEeCCCCCCeEE
Confidence            999965 5677788899987654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.7e-16  Score=95.05  Aligned_cols=75  Identities=17%  Similarity=0.273  Sum_probs=65.5

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      +...|+|++  +||++||+|+.||.|+|||..+++.+..+.+|...|.+     ++|++|+.|+.|++|++..+......
T Consensus        14 ~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~   91 (293)
T d1p22a2          14 TSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTL   91 (293)
T ss_dssp             SCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEE
T ss_pred             CCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeecccccccccccccccccccccc
Confidence            445688865  58999999999999999999999999999999999988     89999999999999999887766554


Q ss_pred             CC
Q psy12376         78 GK   79 (89)
Q Consensus        78 ~~   79 (89)
                      ..
T Consensus        92 ~~   93 (293)
T d1p22a2          92 IH   93 (293)
T ss_dssp             CC
T ss_pred             cc
Confidence            33

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.67  E-value=1.2e-15  Score=95.46  Aligned_cols=85  Identities=15%  Similarity=0.192  Sum_probs=73.1

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEec--CCcceeec-------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLG--KHTNTIVG-------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~--~h~~~i~~-------~~las~s~d~~v~iwd~~~~~   72 (89)
                      .|.+.|++++|+|+|++|++|+.||.|++||.+..+.+..+.  .+...|.+       ++|++|+.|+.|+|||+.+++
T Consensus       224 ~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~  303 (340)
T d1tbga_         224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC
T ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCc
Confidence            367789999999999999999999999999999888766653  34445554       799999999999999999999


Q ss_pred             EEeeeCCCCCCCcC
Q psy12376         73 RVPVLGKHTKSKPS   86 (89)
Q Consensus        73 ~~~~l~~h~~~~~~   86 (89)
                      .+..+.+|...+.+
T Consensus       304 ~~~~~~~H~~~V~~  317 (340)
T d1tbga_         304 RAGVLAGHDNRVSC  317 (340)
T ss_dssp             EEEEECCCSSCEEE
T ss_pred             EEEEEcCCCCCEEE
Confidence            99999999987653

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=1.6e-16  Score=101.91  Aligned_cols=67  Identities=13%  Similarity=0.330  Sum_probs=61.9

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------------cEEEEEeCCCCEEEEeCC
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------------~~las~s~d~~v~iwd~~   69 (89)
                      |...|++++|+|+|++|++|+.||.|++||.++++.+..+.+|.+.|.+             ++||||+.|++|+|||++
T Consensus       307 ~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             ccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            5667999999999999999999999999999999999999999988765             589999999999999984

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=6.9e-16  Score=98.58  Aligned_cols=81  Identities=14%  Similarity=0.173  Sum_probs=69.5

Q ss_pred             cCCcEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec----------cEEEEEeCCCCEEEEeCCCC
Q psy12376          3 LRYYIFLLQTSQV-GQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG----------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         3 ~~~~i~~~~~spd-g~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~----------~~las~s~d~~v~iwd~~~~   71 (89)
                      +...|++++|+|| +.+|++++.||.|++||.++++.+..+.+|..++.+          ++|++++.|+.|+|||++++
T Consensus       204 ~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         204 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS  283 (325)
T ss_dssp             TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred             CCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC
Confidence            4567999999997 689999999999999999999999999888776543          69999999999999999999


Q ss_pred             EEEeeeCCCCCC
Q psy12376         72 KRVPVLGKHTKS   83 (89)
Q Consensus        72 ~~~~~l~~h~~~   83 (89)
                      +.+..+..|...
T Consensus       284 ~~~~~~~~~~~~  295 (325)
T d1pgua1         284 KCVQKWTLDKQQ  295 (325)
T ss_dssp             EEEEEEECCTTC
T ss_pred             CEEEEEEecCCc
Confidence            988876555443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=1.4e-16  Score=98.86  Aligned_cols=79  Identities=18%  Similarity=0.227  Sum_probs=63.3

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE---eeEecCCcceeec--------cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR---VPVLGKHTNTIVG--------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~---~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~~~   70 (89)
                      .|.+.|++|+|||+|++||+|+.||+|+|||..++..   +....+|..+|.+        .+|++|+.|+.|++|++..
T Consensus         9 ~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~   88 (342)
T d1yfqa_           9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred             CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccc
Confidence            4678899999999999999999999999999865432   2233368888876        5899999999999999987


Q ss_pred             CEEEeeeCCC
Q psy12376         71 SKRVPVLGKH   80 (89)
Q Consensus        71 ~~~~~~l~~h   80 (89)
                      +........+
T Consensus        89 ~~~~~~~~~~   98 (342)
T d1yfqa_          89 SPSFQALTNN   98 (342)
T ss_dssp             SSSEEECBSC
T ss_pred             cccccccccc
Confidence            6555544433

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=8.1e-16  Score=96.23  Aligned_cols=82  Identities=17%  Similarity=0.250  Sum_probs=71.0

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCC---
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTS---   71 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~---   71 (89)
                      +|.++|++++|+|++++||+|+.||.|+|||..+++.+..+..|..+|.+       +++++|+.|+.+.+|+....   
T Consensus        53 GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~  132 (340)
T d1tbga_          53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN  132 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSC
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccc
Confidence            68899999999999999999999999999999999999999999998887       79999999999999998543   


Q ss_pred             -EEEeeeCCCCCC
Q psy12376         72 -KRVPVLGKHTKS   83 (89)
Q Consensus        72 -~~~~~l~~h~~~   83 (89)
                       .....+.+|...
T Consensus       133 ~~~~~~~~~~~~~  145 (340)
T d1tbga_         133 VRVSRELAGHTGY  145 (340)
T ss_dssp             CCEEEEECCCSSC
T ss_pred             cccceeccccccc
Confidence             233455566543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=2.3e-16  Score=97.24  Aligned_cols=66  Identities=11%  Similarity=0.197  Sum_probs=61.7

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEe
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYN   67 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd   67 (89)
                      +|...|.+++|+|++++|++|+.||.|++||..+++.+..+.+|..+|.+       ++|++|+.|++|+|||
T Consensus       245 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            35678999999999999999999999999999999999999999999887       7899999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=2e-15  Score=94.34  Aligned_cols=76  Identities=17%  Similarity=0.194  Sum_probs=65.8

Q ss_pred             CcCCc-EEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec------cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          2 NLRYY-IFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG------QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         2 ~~~~~-i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~------~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +|.+. ++|++|  ||++||+|+.||.|+|||..+++.+..+.+|.++|.+      ++|++|+.|++|++|+.......
T Consensus        10 GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~   87 (355)
T d1nexb2          10 GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCT   87 (355)
T ss_dssp             CCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEE
T ss_pred             CcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEecccccccccccccccc
Confidence            57776 566655  6789999999999999999999999999999999987      79999999999999999888776


Q ss_pred             eeeCC
Q psy12376         75 PVLGK   79 (89)
Q Consensus        75 ~~l~~   79 (89)
                      .....
T Consensus        88 ~~~~~   92 (355)
T d1nexb2          88 HVFEG   92 (355)
T ss_dssp             EEECC
T ss_pred             ccccc
Confidence            55443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.9e-15  Score=93.19  Aligned_cols=79  Identities=22%  Similarity=0.284  Sum_probs=68.0

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----cEEEEEeCCCCEEEEeCCCCEEEee
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----QVLAIGTARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----~~las~s~d~~v~iwd~~~~~~~~~   76 (89)
                      +|.+.|.+ +++++|++||+|+.||.|+|||..+++.+..+.+|...|.+     ++|++|+.|+.+++|+.........
T Consensus        14 GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~~~~~~   92 (342)
T d2ovrb2          14 GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHT   92 (342)
T ss_dssp             CSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccccccccccccceec
Confidence            57887754 36678999999999999999999999999999999999887     8999999999999999987776665


Q ss_pred             eCCCC
Q psy12376         77 LGKHT   81 (89)
Q Consensus        77 l~~h~   81 (89)
                      ...+.
T Consensus        93 ~~~~~   97 (342)
T d2ovrb2          93 LYGHT   97 (342)
T ss_dssp             ECCCS
T ss_pred             ccccc
Confidence            54444

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.63  E-value=4.1e-15  Score=94.85  Aligned_cols=81  Identities=17%  Similarity=0.324  Sum_probs=69.8

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEec-------CCcceeec-------cEEEEEeCCCCEEEEe
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLG-------KHTNTIVG-------QVLAIGTARGNLTVYN   67 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~-------~h~~~i~~-------~~las~s~d~~v~iwd   67 (89)
                      .|..+|+++.|+|++++|++++.||.+++||..+++.+..+.       +|...|.+       ++|++|+.|++|+|||
T Consensus       187 ~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd  266 (311)
T d1nr0a1         187 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN  266 (311)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEE
Confidence            356789999999999999999999999999999887766553       47777776       8999999999999999


Q ss_pred             CCCCEEEeeeCCCCC
Q psy12376         68 HMTSKRVPVLGKHTK   82 (89)
Q Consensus        68 ~~~~~~~~~l~~h~~   82 (89)
                      +++++.+..+..|..
T Consensus       267 ~~t~~~~~~l~~~~~  281 (311)
T d1nr0a1         267 VATLKVEKTIPVGTR  281 (311)
T ss_dssp             TTTTEEEEEEECCSS
T ss_pred             CCCCcEEEEEECCCC
Confidence            999999888866653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.62  E-value=2.2e-15  Score=96.10  Aligned_cols=84  Identities=13%  Similarity=0.110  Sum_probs=71.4

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE--eeEecCCcceeec-------cEEEEEeC--CCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR--VPVLGKHTNTIVG-------QVLAIGTA--RGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~--~~~~~~h~~~i~~-------~~las~s~--d~~v~iwd~~~   70 (89)
                      +|.+.|++++|+|+|++||+|+.||.|++||..+++.  ...+..|..+|.+       ++|++++.  +..++||+.++
T Consensus        56 ~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~  135 (311)
T d1nr0a1          56 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT  135 (311)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT
T ss_pred             CCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccc
Confidence            5788999999999999999999999999999987654  3457789988887       67888876  45699999999


Q ss_pred             CEEEeeeCCCCCCCc
Q psy12376         71 SKRVPVLGKHTKSKP   85 (89)
Q Consensus        71 ~~~~~~l~~h~~~~~   85 (89)
                      ++....+.+|...+.
T Consensus       136 ~~~~~~l~~h~~~v~  150 (311)
T d1nr0a1         136 GTSNGNLTGQARAMN  150 (311)
T ss_dssp             CCBCBCCCCCSSCEE
T ss_pred             ccccccccccccccc
Confidence            888888888887754

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.8e-15  Score=95.66  Aligned_cols=82  Identities=13%  Similarity=0.134  Sum_probs=64.7

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE-----eeEecCCcceeec-------cEEEEEeCCCCEEEEeCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR-----VPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~-----~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~   69 (89)
                      .|.+.|++++|||+|++||+|+ ||.|+|||+.+++.     .....+|.+.|.+       ++|++|+.|+.|++||+.
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            5788999999999999999997 89999999876432     2234578888876       799999999999999986


Q ss_pred             C--CEEEeeeCCCCCCC
Q psy12376         70 T--SKRVPVLGKHTKSK   84 (89)
Q Consensus        70 ~--~~~~~~l~~h~~~~   84 (89)
                      .  .+....+..|...+
T Consensus       128 ~~~~~~~~~~~~~~~~v  144 (337)
T d1gxra_         128 APTPRIKAELTSSAPAC  144 (337)
T ss_dssp             CC--EEEEEEECSSSCE
T ss_pred             ccccccccccccccccc
Confidence            4  34555666666543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.60  E-value=4.1e-15  Score=92.71  Aligned_cols=69  Identities=22%  Similarity=0.164  Sum_probs=61.2

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEec-CCcceeec------cEEEEEeCCCCEEEEeCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLG-KHTNTIVG------QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~-~h~~~i~~------~~las~s~d~~v~iwd~~~   70 (89)
                      +|.++|++++|+|||++||+|+.||.|++||+.+++.+..+. .|...|.+      ..+++++.|+.+++|+...
T Consensus        10 GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~   85 (299)
T d1nr0a2          10 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG   85 (299)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSS
T ss_pred             CCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCC
Confidence            689999999999999999999999999999999998887774 68888876      4677788999999999854

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.4e-14  Score=89.56  Aligned_cols=85  Identities=18%  Similarity=0.217  Sum_probs=72.0

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCC--CeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMT--SKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~--~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~   72 (89)
                      +|.+.|.+++|+|||++|++|+.||.|++||...  .+....+..|...+.+       .++++++.|+.+.+||+.+++
T Consensus        95 ~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~  174 (337)
T d1gxra_          95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT  174 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4667899999999999999999999999999864  4455667788777665       789999999999999999999


Q ss_pred             EEeeeCCCCCCCcC
Q psy12376         73 RVPVLGKHTKSKPS   86 (89)
Q Consensus        73 ~~~~l~~h~~~~~~   86 (89)
                      .......|...+.+
T Consensus       175 ~~~~~~~~~~~v~~  188 (337)
T d1gxra_         175 LVRQFQGHTDGASC  188 (337)
T ss_dssp             EEEEECCCSSCEEE
T ss_pred             cccccccccccccc
Confidence            88888888876543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=4.2e-14  Score=91.92  Aligned_cols=73  Identities=21%  Similarity=0.324  Sum_probs=61.8

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEe------cCCcceeec-------cEEEEEeCCCC---EEEEeC
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVL------GKHTNTIVG-------QVLAIGTARGN---LTVYNH   68 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~------~~h~~~i~~-------~~las~s~d~~---v~iwd~   68 (89)
                      ..+.+++|+|+| +||+|+.||.|++||+.+++.+..+      .+|..+|.+       ++|++|+.|++   |++||+
T Consensus       185 ~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~  263 (393)
T d1sq9a_         185 QFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET  263 (393)
T ss_dssp             CCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred             CcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccc
Confidence            347899999998 8999999999999999998876543      468888887       79999999986   899999


Q ss_pred             CCCEEEeeeC
Q psy12376         69 MTSKRVPVLG   78 (89)
Q Consensus        69 ~~~~~~~~l~   78 (89)
                      ++++.+..+.
T Consensus       264 ~~g~~~~~l~  273 (393)
T d1sq9a_         264 EFGERIGSLS  273 (393)
T ss_dssp             TTCCEEEEEC
T ss_pred             ccceeeeeec
Confidence            9988777663

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.52  E-value=6.8e-14  Score=90.35  Aligned_cols=85  Identities=12%  Similarity=0.082  Sum_probs=69.6

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCC------------------eEeeEecCCcceeec-------cEEEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTS------------------KRVPVLGKHTNTIVG-------QVLAI   56 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~------------------~~~~~~~~h~~~i~~-------~~las   56 (89)
                      .|...|++++|+|+|++||+|+.||.+++|+...+                  +.+....+|...|.+       ++|++
T Consensus       139 ~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s  218 (371)
T d1k8kc_         139 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW  218 (371)
T ss_dssp             TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE
T ss_pred             ccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccc
Confidence            35678999999999999999999999999997643                  233444567776654       78999


Q ss_pred             EeCCCCEEEEeCCCCEEEeeeCCCCCCCcC
Q psy12376         57 GTARGNLTVYNHMTSKRVPVLGKHTKSKPS   86 (89)
Q Consensus        57 ~s~d~~v~iwd~~~~~~~~~l~~h~~~~~~   86 (89)
                      ++.|+.|++||+.+++.+..+..|...+.+
T Consensus       219 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s  248 (371)
T d1k8kc_         219 VSHDSTVCLADADKKMAVATLASETLPLLA  248 (371)
T ss_dssp             EETTTEEEEEEGGGTTEEEEEECSSCCEEE
T ss_pred             cccCCcceEEeeecccceeeeeccccccee
Confidence            999999999999988888888888776543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.52  E-value=3.1e-14  Score=88.67  Aligned_cols=71  Identities=17%  Similarity=0.130  Sum_probs=61.0

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEee---EecCCcceeec-------cEEEEEeCCCCEEEEeCCCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVP---VLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~---~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~   71 (89)
                      .|+.+|++++|+|++++|++++.+|.|++||..+++...   .+.+|..+|.+       ++|++|+.|+.|+|||++++
T Consensus       177 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         177 VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCC
Confidence            367789999999999999999999999999998765543   45568888876       79999999999999999865


Q ss_pred             E
Q psy12376         72 K   72 (89)
Q Consensus        72 ~   72 (89)
                      .
T Consensus       257 ~  257 (299)
T d1nr0a2         257 S  257 (299)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=2.1e-13  Score=84.48  Aligned_cols=67  Identities=16%  Similarity=0.187  Sum_probs=57.8

Q ss_pred             CcCCcEEEEEEccC----------CCEEEEEeCCCcEEEEeCCC-CeEeeEecCCcceeec------cEEEEEeCCCCEE
Q psy12376          2 NLRYYIFLLQTSQV----------GQVLAIGTARGNLTVYNHMT-SKRVPVLGKHTNTIVG------QVLAIGTARGNLT   64 (89)
Q Consensus         2 ~~~~~i~~~~~spd----------g~~la~g~~~g~v~iwd~~~-~~~~~~~~~h~~~i~~------~~las~s~d~~v~   64 (89)
                      .|..+|.+++|+|+          +.+||+|+.|+.|++||++. ++.+..+.+|...|.+      ..|++++.|+.|+
T Consensus       203 ~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~  282 (287)
T d1pgua2         203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIK  282 (287)
T ss_dssp             CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEE
T ss_pred             ccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEE
Confidence            35678999999875          46899999999999999866 5667778899998887      6799999999999


Q ss_pred             EEeC
Q psy12376         65 VYNH   68 (89)
Q Consensus        65 iwd~   68 (89)
                      +||+
T Consensus       283 iW~i  286 (287)
T d1pgua2         283 RWNV  286 (287)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=8.5e-13  Score=83.98  Aligned_cols=84  Identities=7%  Similarity=0.020  Sum_probs=69.9

Q ss_pred             CcCCcEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCeEeeEec---CCcceeec--------cEEEEEeCCCCEEEEeCC
Q psy12376          2 NLRYYIFLLQTSQVGQV-LAIGTARGNLTVYNHMTSKRVPVLG---KHTNTIVG--------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~-la~g~~~g~v~iwd~~~~~~~~~~~---~h~~~i~~--------~~las~s~d~~v~iwd~~   69 (89)
                      +|...|.+++|+|++++ +++++.||.+++||...++....+.   +|...|.+        .+|++++.|+.|++||++
T Consensus       157 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~  236 (325)
T d1pgua1         157 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK  236 (325)
T ss_dssp             SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred             ecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeec
Confidence            36778999999999875 6789999999999998877655543   45666665        689999999999999999


Q ss_pred             CCEEEeeeCCCCCCCc
Q psy12376         70 TSKRVPVLGKHTKSKP   85 (89)
Q Consensus        70 ~~~~~~~l~~h~~~~~   85 (89)
                      +++.+..+.+|...+.
T Consensus       237 ~~~~~~~l~~~~~~v~  252 (325)
T d1pgua1         237 SGEFLKYIEDDQEPVQ  252 (325)
T ss_dssp             TCCEEEECCBTTBCCC
T ss_pred             cccccccccccccccc
Confidence            9999999988887654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.41  E-value=2e-12  Score=81.31  Aligned_cols=83  Identities=13%  Similarity=0.101  Sum_probs=68.0

Q ss_pred             CCcCCcEEEEEEccCCCEEEEEeCCC--cEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCC
Q psy12376          1 MNLRYYIFLLQTSQVGQVLAIGTARG--NLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         1 ~~~~~~i~~~~~spdg~~la~g~~~g--~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~   71 (89)
                      +.|...|++++|||||++|++++.+.  .|++||..+++. ..+..|...+.+       ++|++++.++.+++|++.++
T Consensus        39 ~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~  117 (360)
T d1k32a3          39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG  117 (360)
T ss_dssp             CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccceecccccccccccccc
Confidence            35778899999999999998766543  799999988764 556678777765       89999999999999999998


Q ss_pred             EEEeeeCCCCCCC
Q psy12376         72 KRVPVLGKHTKSK   84 (89)
Q Consensus        72 ~~~~~l~~h~~~~   84 (89)
                      +....+..|...+
T Consensus       118 ~~~~~~~~~~~~~  130 (360)
T d1k32a3         118 KPTVIERSREAMI  130 (360)
T ss_dssp             CEEEEEECSSSCC
T ss_pred             ceeeeeecccccc
Confidence            8888777776554

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=3.2e-12  Score=79.52  Aligned_cols=72  Identities=11%  Similarity=0.090  Sum_probs=65.0

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----cEEEEEeCCCCEEEEeCCCCEEE
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----QVLAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----~~las~s~d~~v~iwd~~~~~~~   74 (89)
                      +...+.++.|+|++.++++++.||.|++||.++++.+..+.+|...|.+     ++|++|+.|+.|++||+++....
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  276 (355)
T d1nexb2         200 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK  276 (355)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccccccccccceeeecccccceEEeeeccccccccccccccccccccccccceeeeeeccccccccccccccee
Confidence            3456889999999999999999999999999999999999999998877     89999999999999999876554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.9e-12  Score=78.29  Aligned_cols=75  Identities=17%  Similarity=0.259  Sum_probs=64.6

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----cEEEEEeCCCCEEEEeCCCCEEEeeeCCCCC
Q psy12376          8 FLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----QVLAIGTARGNLTVYNHMTSKRVPVLGKHTK   82 (89)
Q Consensus         8 ~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----~~las~s~d~~v~iwd~~~~~~~~~l~~h~~   82 (89)
                      ....+++++.+|++|+.||.|++||.+.++.+..+.+|...+.+     ++|++|+.|+.|++||+...+....+..+..
T Consensus       179 ~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~  258 (342)
T d2ovrb2         179 RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK  258 (342)
T ss_dssp             CEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTS
T ss_pred             ccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccce
Confidence            34556678899999999999999999999999999999888776     8999999999999999988877777665443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.27  E-value=3e-12  Score=78.93  Aligned_cols=67  Identities=18%  Similarity=0.325  Sum_probs=55.9

Q ss_pred             cCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecC-Ccceeec-----cEEEEEeCCCCEEEEeCC
Q psy12376          3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGK-HTNTIVG-----QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~-h~~~i~~-----~~las~s~d~~v~iwd~~   69 (89)
                      |...+.+++|+|++.+||+|+.||.|++||.++++.+..+.. |...+.+     +++++|+.|.++++|...
T Consensus       250 ~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             SCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             ccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence            445689999999999999999999999999999998888864 4444544     889999889888888763

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.7e-10  Score=69.79  Aligned_cols=80  Identities=15%  Similarity=0.216  Sum_probs=64.4

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-----cEEEEEeCCCCEEEEeCCC---------
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-----QVLAIGTARGNLTVYNHMT---------   70 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-----~~las~s~d~~v~iwd~~~---------   70 (89)
                      ..+..+.+  ++.++++++.||.|++||.++++.+..+.+|...+.+     .+|++|+.|+.|++||+..         
T Consensus       179 ~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  256 (293)
T d1p22a2         179 RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG  256 (293)
T ss_dssp             SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTT
T ss_pred             cccccccC--CCCeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCC
Confidence            34555555  4579999999999999999999988888888887766     8899999999999999642         


Q ss_pred             CEEEeeeCCCCCCCcC
Q psy12376         71 SKRVPVLGKHTKSKPS   86 (89)
Q Consensus        71 ~~~~~~l~~h~~~~~~   86 (89)
                      ......+.+|...+.+
T Consensus       257 ~~~~~~~~~H~~~V~~  272 (293)
T d1p22a2         257 TLCLRTLVEHSGRVFR  272 (293)
T ss_dssp             TTEEEEECCCSSCCCC
T ss_pred             ceeeEEecCCCCCEEE
Confidence            3456778889887754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.22  E-value=3.2e-11  Score=79.94  Aligned_cols=79  Identities=10%  Similarity=0.105  Sum_probs=60.6

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE--eeEec---CCcceeec-------c-EEEEEeCCCCEEEEeCCCC
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR--VPVLG---KHTNTIVG-------Q-VLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~--~~~~~---~h~~~i~~-------~-~las~s~d~~v~iwd~~~~   71 (89)
                      ..+..++|||||+++++++.||.+.+||+.+++.  ...+.   +|.+.+.+       + ++++++.+++|.|||..++
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~  141 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL  141 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred             CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc
Confidence            3588999999999999999999999999987653  23332   34444432       4 4688999999999999999


Q ss_pred             EEEeeeCCCCCC
Q psy12376         72 KRVPVLGKHTKS   83 (89)
Q Consensus        72 ~~~~~l~~h~~~   83 (89)
                      +....+..|...
T Consensus       142 ~~~~~~~~~~~~  153 (432)
T d1qksa2         142 EPKKIQSTRGMT  153 (432)
T ss_dssp             CEEEEEECCEEC
T ss_pred             cceeeeccCCcc
Confidence            888777665543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.21  E-value=4.2e-11  Score=78.51  Aligned_cols=79  Identities=8%  Similarity=0.098  Sum_probs=60.3

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEe--eEec---CCcceeec-------cE-EEEEeCCCCEEEEeCCCC
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRV--PVLG---KHTNTIVG-------QV-LAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~--~~~~---~h~~~i~~-------~~-las~s~d~~v~iwd~~~~   71 (89)
                      ..+..++|||||++|++++.||.+++||+.+++..  ..+.   +|...+.+       ++ +++++.++.+.+||..++
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~  141 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL  141 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc
Confidence            45889999999999999999999999999887642  2222   34333333       44 577779999999999998


Q ss_pred             EEEeeeCCCCCC
Q psy12376         72 KRVPVLGKHTKS   83 (89)
Q Consensus        72 ~~~~~l~~h~~~   83 (89)
                      .....+..|...
T Consensus       142 ~~~~~~~~~~~~  153 (426)
T d1hzua2         142 EPKQIVSTRGMT  153 (426)
T ss_dssp             CEEEEEECCEEC
T ss_pred             ceeEEeeccCCC
Confidence            888777666544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.04  E-value=2.1e-09  Score=65.76  Aligned_cols=78  Identities=10%  Similarity=0.071  Sum_probs=62.1

Q ss_pred             CCcEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376          4 RYYIFLLQTSQVGQVL-AIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus         4 ~~~i~~~~~spdg~~l-a~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      .+.+..++|||||++| +++..++.|.+||..+++.+..+..+..+...       ..++++..++.+.+|+..+++...
T Consensus        31 g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccccccccccccccceeeecccccceeee
Confidence            3457889999999987 56677899999999999998888776554222       467788889999999999888877


Q ss_pred             eeCCCC
Q psy12376         76 VLGKHT   81 (89)
Q Consensus        76 ~l~~h~   81 (89)
                      .+..+.
T Consensus       111 ~~~~~~  116 (301)
T d1l0qa2         111 TVKTGK  116 (301)
T ss_dssp             EEECSS
T ss_pred             eccccc
Confidence            765543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.03  E-value=7e-10  Score=68.91  Aligned_cols=68  Identities=9%  Similarity=-0.029  Sum_probs=55.0

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEec-CCcce---eec----c-EEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         10 LQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLG-KHTNT---IVG----Q-VLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        10 ~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~-~h~~~---i~~----~-~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      ++|++++++|++++.+++|.+||+.+++.+..+. .|...   +..    + ++++++.++.|.+||+.+++....+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~   78 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   78 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeee
Confidence            5789999999999999999999999999988765 33322   221    4 4577889999999999999887655

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.03  E-value=1.2e-09  Score=68.25  Aligned_cols=76  Identities=14%  Similarity=0.165  Sum_probs=61.1

Q ss_pred             CcCCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEE----------eCCCCEE
Q psy12376          2 NLRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIG----------TARGNLT   64 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~----------s~d~~v~   64 (89)
                      .+...+.+++|+|||++|++++.++.+.+|+..+++....+..|...+.+       ++||.+          ..++.++
T Consensus        83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~  162 (360)
T d1k32a3          83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH  162 (360)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred             CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccccee
Confidence            45677999999999999999999999999999999888777777665543       667644          3455699


Q ss_pred             EEeCCCCEEEeee
Q psy12376         65 VYNHMTSKRVPVL   77 (89)
Q Consensus        65 iwd~~~~~~~~~l   77 (89)
                      +||+.+++.....
T Consensus       163 v~d~~~~~~~~~~  175 (360)
T d1k32a3         163 VYDMEGRKIFAAT  175 (360)
T ss_dssp             EEETTTTEEEECS
T ss_pred             eeccccCceeeec
Confidence            9999988766544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.88  E-value=1.4e-09  Score=71.10  Aligned_cols=79  Identities=13%  Similarity=0.052  Sum_probs=58.3

Q ss_pred             cCCcEEEEEEccCCCEEEE-------EeCCCcEEEEeCCCCeEeeEec---------CCcceeec-------c-EEEEE-
Q psy12376          3 LRYYIFLLQTSQVGQVLAI-------GTARGNLTVYNHMTSKRVPVLG---------KHTNTIVG-------Q-VLAIG-   57 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~-------g~~~g~v~iwd~~~~~~~~~~~---------~h~~~i~~-------~-~las~-   57 (89)
                      |...+..++|||||++|++       +..+++|+|||+.+++...++.         .|..++..       + +++++ 
T Consensus       302 ~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~  381 (426)
T d1hzua2         302 QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVW  381 (426)
T ss_dssp             SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEEC
T ss_pred             CCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEe
Confidence            4566889999999999995       4567899999999887654432         33344442       4 44554 


Q ss_pred             ---eCCCCEEEEeCCCCEEEeeeCCCC
Q psy12376         58 ---TARGNLTVYNHMTSKRVPVLGKHT   81 (89)
Q Consensus        58 ---s~d~~v~iwd~~~~~~~~~l~~h~   81 (89)
                         +.|+.|.|||.++.+....+.++.
T Consensus       382 ~~~~~~~~i~v~D~~T~k~~~~i~~~~  408 (426)
T d1hzua2         382 NGKNDSSALVVVDDKTLKLKAVVKDPR  408 (426)
T ss_dssp             CCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred             cCCCCCCeEEEEECCCCeEEEEECCCC
Confidence               468889999999999888877664

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.85  E-value=4.2e-08  Score=59.78  Aligned_cols=73  Identities=8%  Similarity=-0.000  Sum_probs=56.0

Q ss_pred             CcEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCeEeeEecCCcce--eec----cE-EEEEeCCCCEEEEeCCCCEEE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTA---RGNLTVYNHMTSKRVPVLGKHTNT--IVG----QV-LAIGTARGNLTVYNHMTSKRV   74 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~---~g~v~iwd~~~~~~~~~~~~h~~~--i~~----~~-las~s~d~~v~iwd~~~~~~~   74 (89)
                      ..+..++|+++|..++.+..   ++.|.+||..+++.+..+..+..+  +..    ++ +++++.|+.|.+||+++++.+
T Consensus       200 ~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            34678999999998765543   468999999999988777654432  111    44 578889999999999999988


Q ss_pred             eee
Q psy12376         75 PVL   77 (89)
Q Consensus        75 ~~l   77 (89)
                      ..+
T Consensus       280 ~~~  282 (301)
T d1l0qa2         280 ATM  282 (301)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            766

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.82  E-value=2.9e-08  Score=61.36  Aligned_cols=82  Identities=18%  Similarity=0.137  Sum_probs=62.1

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEee
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~   76 (89)
                      ...+..+.++|++.+++... ++.+.+||..+++.+..+... ..+.+       +++++++.|+.|+|||+++++.+..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~-~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~  328 (346)
T d1jmxb_         251 TELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN  328 (346)
T ss_dssp             SSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred             cceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEE
Confidence            34577889999888877765 468999999999987766422 22222       7899999999999999999999888


Q ss_pred             eCCCCCCCcCC
Q psy12376         77 LGKHTKSKPST   87 (89)
Q Consensus        77 l~~h~~~~~~~   87 (89)
                      +.-..+..+.+
T Consensus       329 i~~p~g~~~~~  339 (346)
T d1jmxb_         329 IKLPGGDMSTT  339 (346)
T ss_dssp             EECSSSCCBTC
T ss_pred             EECCCCCccee
Confidence            76555554443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.80  E-value=5.9e-08  Score=59.74  Aligned_cols=72  Identities=11%  Similarity=0.135  Sum_probs=57.0

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCCCCEEEee
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~~~~~~~~   76 (89)
                      ...+..+.++|++.+++.+  ++.+.+||..+++.+..+.. ...+.+       ++|++++.|++|+|||.++++.+..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~  316 (337)
T d1pbyb_         240 DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred             CcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcC-CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence            3457788999999988776  58899999999998877643 222322       7899999999999999999888776


Q ss_pred             eC
Q psy12376         77 LG   78 (89)
Q Consensus        77 l~   78 (89)
                      +.
T Consensus       317 i~  318 (337)
T d1pbyb_         317 VD  318 (337)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.69  E-value=1.5e-07  Score=57.85  Aligned_cols=74  Identities=15%  Similarity=0.119  Sum_probs=54.2

Q ss_pred             cEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCeEeeEecCCcceee---------c---cEEEEEe------------CC
Q psy12376          6 YIFLLQTSQVGQVL-AIGTARGNLTVYNHMTSKRVPVLGKHTNTIV---------G---QVLAIGT------------AR   60 (89)
Q Consensus         6 ~i~~~~~spdg~~l-a~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~---------~---~~las~s------------~d   60 (89)
                      .+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+.....         .   ++++++.            .+
T Consensus        35 ~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T d1pbyb_          35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccc
Confidence            36789999999987 5677899999999999998777654432111         0   4554444            56


Q ss_pred             CCEEEEeCCCCEEEeeeCC
Q psy12376         61 GNLTVYNHMTSKRVPVLGK   79 (89)
Q Consensus        61 ~~v~iwd~~~~~~~~~l~~   79 (89)
                      ..+.+||..++.....+..
T Consensus       115 ~~~~~~d~~~~~~~~~~~~  133 (337)
T d1pbyb_         115 TRVALYDAETLSRRKAFEA  133 (337)
T ss_dssp             CEEEEEETTTTEEEEEEEC
T ss_pred             cceeeccccCCeEEEeccc
Confidence            7899999998887776543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.49  E-value=6.6e-07  Score=56.29  Aligned_cols=78  Identities=9%  Similarity=-0.071  Sum_probs=57.2

Q ss_pred             CCcEEEEEEccCCCEEEEE-----eCCCcEEEEeCCCCeEeeEecCCcce-e-ec---cEEEEE----------eCCCCE
Q psy12376          4 RYYIFLLQTSQVGQVLAIG-----TARGNLTVYNHMTSKRVPVLGKHTNT-I-VG---QVLAIG----------TARGNL   63 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g-----~~~g~v~iwd~~~~~~~~~~~~h~~~-i-~~---~~las~----------s~d~~v   63 (89)
                      ..++..++++|||+.+++.     +..+.+.+||..+++.+..+..+..+ + .+   ++|+.+          +.++.|
T Consensus        20 ~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v   99 (373)
T d2madh_          20 DGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYV   99 (373)
T ss_pred             CCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCcccccccceEE
Confidence            4568889999999988764     23467999999999998887665443 2 22   566555          456789


Q ss_pred             EEEeCCCCEEEeeeCCCC
Q psy12376         64 TVYNHMTSKRVPVLGKHT   81 (89)
Q Consensus        64 ~iwd~~~~~~~~~l~~h~   81 (89)
                      .+||..+++....+..+.
T Consensus       100 ~v~D~~t~~~~~~~~~~~  117 (373)
T d2madh_         100 EVFDPVTFLPIADIELPD  117 (373)
T ss_pred             EEEECCCCcEEEEEecCC
Confidence            999999998877654443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=9.3e-08  Score=59.06  Aligned_cols=73  Identities=14%  Similarity=0.079  Sum_probs=47.2

Q ss_pred             CcCCcEEEEEEccCCCEEEE-EeCCCcEEEEeCCCCeEeeE----ecCCcce--eec----cEEEEEe-CCCCEEEEeCC
Q psy12376          2 NLRYYIFLLQTSQVGQVLAI-GTARGNLTVYNHMTSKRVPV----LGKHTNT--IVG----QVLAIGT-ARGNLTVYNHM   69 (89)
Q Consensus         2 ~~~~~i~~~~~spdg~~la~-g~~~g~v~iwd~~~~~~~~~----~~~h~~~--i~~----~~las~s-~d~~v~iwd~~   69 (89)
                      .+.+.+..++|||||++|++ +..++.|.+|++........    ......+  +..    ++|++++ .++.+.+|+..
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~  113 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  113 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc
Confidence            35567899999999998854 45589999999875432211    1111111  111    6666665 57789999887


Q ss_pred             CCEEE
Q psy12376         70 TSKRV   74 (89)
Q Consensus        70 ~~~~~   74 (89)
                      .....
T Consensus       114 ~~~~~  118 (333)
T d1ri6a_         114 DGLPV  118 (333)
T ss_dssp             TTEEE
T ss_pred             cccce
Confidence            65543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.47  E-value=5.6e-07  Score=56.06  Aligned_cols=73  Identities=10%  Similarity=0.095  Sum_probs=54.4

Q ss_pred             EEEEEccCCCEEEEEeCC----------CcEEEEeCCCCeEeeEecCCcceeec-------c--EEEEEeCCCCEEEEeC
Q psy12376          8 FLLQTSQVGQVLAIGTAR----------GNLTVYNHMTSKRVPVLGKHTNTIVG-------Q--VLAIGTARGNLTVYNH   68 (89)
Q Consensus         8 ~~~~~spdg~~la~g~~~----------g~v~iwd~~~~~~~~~~~~h~~~i~~-------~--~las~s~d~~v~iwd~   68 (89)
                      ..++++|++..++....+          ..|.+||..+++.+..+..+ ..+.+       +  ++++++.|++|++||.
T Consensus       252 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~  330 (355)
T d2bbkh_         252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDA  330 (355)
T ss_dssp             SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred             EEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC-CCEEEEEEcCCCCeEEEEEECCCCEEEEEEC
Confidence            458899999987765443          36999999999887766432 22222       3  5678889999999999


Q ss_pred             CCCEEEeeeCCCC
Q psy12376         69 MTSKRVPVLGKHT   81 (89)
Q Consensus        69 ~~~~~~~~l~~h~   81 (89)
                      ++++.+..+..+.
T Consensus       331 ~tg~~~~~i~~~G  343 (355)
T d2bbkh_         331 ESGEELRSVNQLG  343 (355)
T ss_dssp             TTCCEEEEECCCC
T ss_pred             CCCCEEEEEeCcC
Confidence            9999988876543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.43  E-value=3.4e-07  Score=60.22  Aligned_cols=60  Identities=10%  Similarity=0.013  Sum_probs=48.1

Q ss_pred             ccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcce--eec----cEEEEEeCCCCEEEEeCCCCE
Q psy12376         13 SQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNT--IVG----QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus        13 spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~--i~~----~~las~s~d~~v~iwd~~~~~   72 (89)
                      +++.-++++.+.+|+|.|||..+++.+..+..+..+  +..    +++++++.|+++++||+.+++
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~   94 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE   94 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCC
Confidence            344445689999999999999999999998766432  111    899999999999999997654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.42  E-value=3.2e-06  Score=53.01  Aligned_cols=76  Identities=7%  Similarity=0.044  Sum_probs=55.0

Q ss_pred             EEEEEEccCCCEEE----------EEeCCCcEEEEeCCCCeEeeEecCCcceeec-------c--EEEEEeCCCCEEEEe
Q psy12376          7 IFLLQTSQVGQVLA----------IGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------Q--VLAIGTARGNLTVYN   67 (89)
Q Consensus         7 i~~~~~spdg~~la----------~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~--~las~s~d~~v~iwd   67 (89)
                      ...++++|++..++          ....++.+.+||..+++.+..+... ..+.+       +  ++++++.|++|+|||
T Consensus       269 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~-~~~~~~a~spDG~~~l~vt~~~d~~v~v~D  347 (373)
T d2madh_         269 WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             ceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCC-CCeeEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence            34566777766543          4556778999999999888776532 22222       3  568899999999999


Q ss_pred             CCCCEEEeeeCCCCCC
Q psy12376         68 HMTSKRVPVLGKHTKS   83 (89)
Q Consensus        68 ~~~~~~~~~l~~h~~~   83 (89)
                      +.+++.+..+..+...
T Consensus       348 ~~tg~~~~~~~~~g~~  363 (373)
T d2madh_         348 AGAGDQDQSTVELGSG  363 (373)
T ss_pred             CCCCCEEEEECCCCCC
Confidence            9999999988766444

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.31  E-value=7.3e-07  Score=58.33  Aligned_cols=72  Identities=13%  Similarity=0.018  Sum_probs=54.5

Q ss_pred             CCcEEEEEEccCCCEEEEEeC---------CCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEe
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTA---------RGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYN   67 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~---------~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd   67 (89)
                      ...|.+++|||||++||.++.         ++.+.+||+.+++ +..+..+...+..       ++||.. .|+.+++|+
T Consensus        61 ~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~  138 (470)
T d2bgra1          61 GHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKI  138 (470)
T ss_dssp             SSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEES
T ss_pred             cCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEe-ecccceEEE
Confidence            456899999999999998753         5788999999886 4556666655443       677774 677899999


Q ss_pred             CCCCEEEeee
Q psy12376         68 HMTSKRVPVL   77 (89)
Q Consensus        68 ~~~~~~~~~l   77 (89)
                      ..+++.....
T Consensus       139 ~~~g~~~~~t  148 (470)
T d2bgra1         139 EPNLPSYRIT  148 (470)
T ss_dssp             STTSCCEECC
T ss_pred             CCCCceeeee
Confidence            9887765544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.31  E-value=1.2e-06  Score=54.58  Aligned_cols=71  Identities=10%  Similarity=-0.014  Sum_probs=49.4

Q ss_pred             EEEEEccCCCEEEEE----------eCCCcEEEEeCCCCeEeeEecCCcc----------ee--ec--cEEE--EEeCCC
Q psy12376          8 FLLQTSQVGQVLAIG----------TARGNLTVYNHMTSKRVPVLGKHTN----------TI--VG--QVLA--IGTARG   61 (89)
Q Consensus         8 ~~~~~spdg~~la~g----------~~~g~v~iwd~~~~~~~~~~~~h~~----------~i--~~--~~la--s~s~d~   61 (89)
                      ..++|||||++|++.          ..++.|.+||..+++.+..+..+..          .+  ..  ++++  ..+.+.
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~  129 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP  129 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCc
Confidence            368999999988764          3478999999999988766542211          11  11  4433  445677


Q ss_pred             CEEEEeCCCCEEEeeeC
Q psy12376         62 NLTVYNHMTSKRVPVLG   78 (89)
Q Consensus        62 ~v~iwd~~~~~~~~~l~   78 (89)
                      .+.+||..+++....+.
T Consensus       130 ~~~~~~~~~~~~~~~~~  146 (355)
T d2bbkh_         130 AVGVVDLEGKAFKRMLD  146 (355)
T ss_dssp             EEEEEETTTTEEEEEEE
T ss_pred             eeeeeecCCCcEeeEEe
Confidence            89999999888776554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.25  E-value=2.2e-06  Score=54.37  Aligned_cols=71  Identities=10%  Similarity=0.034  Sum_probs=51.4

Q ss_pred             EEEEccCCCEEEEEe----------CCCcEEEEeCCCCeEeeEecCCcc----------ee-ec---cEEEEE-eCCCCE
Q psy12376          9 LLQTSQVGQVLAIGT----------ARGNLTVYNHMTSKRVPVLGKHTN----------TI-VG---QVLAIG-TARGNL   63 (89)
Q Consensus         9 ~~~~spdg~~la~g~----------~~g~v~iwd~~~~~~~~~~~~h~~----------~i-~~---~~las~-s~d~~v   63 (89)
                      .++|+|||++|+..+          .++.|.+||..+++.+..+..+..          .+ .+   ++|+.+ ..++.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            589999999888764          367899999999988776542211          11 11   555555 568999


Q ss_pred             EEEeCCCCEEEeeeCC
Q psy12376         64 TVYNHMTSKRVPVLGK   79 (89)
Q Consensus        64 ~iwd~~~~~~~~~l~~   79 (89)
                      .+||+.+++....+..
T Consensus       149 ~~~d~~~~~~~~~~~~  164 (368)
T d1mdah_         149 AGLSVPGASDDQLTKS  164 (368)
T ss_dssp             EEEEETTTEEEEEEEC
T ss_pred             EEEECCCCcEeEEeec
Confidence            9999999988776643

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.93  E-value=1.6e-05  Score=50.28  Aligned_cols=64  Identities=5%  Similarity=-0.008  Sum_probs=49.8

Q ss_pred             EEEEccCCCEEEEEe-CCCcEEEEeCCCCeEeeEecCCcceeec----cEEEEEeCCCCEEEEeCCCCE
Q psy12376          9 LLQTSQVGQVLAIGT-ARGNLTVYNHMTSKRVPVLGKHTNTIVG----QVLAIGTARGNLTVYNHMTSK   72 (89)
Q Consensus         9 ~~~~spdg~~la~g~-~~g~v~iwd~~~~~~~~~~~~h~~~i~~----~~las~s~d~~v~iwd~~~~~   72 (89)
                      .++|||||++|+++. .++.+.+||..+++....+..+......    ..++..+.|+++.+|+.....
T Consensus       128 ~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~  196 (368)
T d1mdah_         128 IIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAP  196 (368)
T ss_dssp             SEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCc
Confidence            588999999988776 5789999999999988877654332221    677788999999999986543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=1.1e-05  Score=49.31  Aligned_cols=54  Identities=9%  Similarity=0.057  Sum_probs=35.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEeeEec--CCcceeec-------cEE-EEEeCCCCEEEEeCCCC
Q psy12376         18 VLAIGTARGNLTVYNHMTSKRVPVLG--KHTNTIVG-------QVL-AIGTARGNLTVYNHMTS   71 (89)
Q Consensus        18 ~la~g~~~g~v~iwd~~~~~~~~~~~--~h~~~i~~-------~~l-as~s~d~~v~iwd~~~~   71 (89)
                      .++++..+++|++|+......+..++  .|.+.+..       ++| +++..|+.|.+|++..+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~   69 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD   69 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCC
Confidence            45788899999999986533222222  34444433       555 66667999999999754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.68  E-value=6.2e-05  Score=48.89  Aligned_cols=75  Identities=12%  Similarity=0.127  Sum_probs=53.7

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecC-----Ccceeec-------cEEEEEeC---------CCCEEEE
Q psy12376          8 FLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGK-----HTNTIVG-------QVLAIGTA---------RGNLTVY   66 (89)
Q Consensus         8 ~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~-----h~~~i~~-------~~las~s~---------d~~v~iw   66 (89)
                      ..+.|.+|++++..  .++.+.+||+.+++....+..     |...|.+       ++|+.++.         ++.++||
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            46889999988764  578999999999987655543     3344443       77777643         5678999


Q ss_pred             eCCCCEEEeeeCCCCCCCc
Q psy12376         67 NHMTSKRVPVLGKHTKSKP   85 (89)
Q Consensus        67 d~~~~~~~~~l~~h~~~~~   85 (89)
                      |+.+++. ..+..|+..+.
T Consensus        98 d~~~~~~-~~l~~~~~~~~  115 (470)
T d2bgra1          98 DLNKRQL-ITEERIPNNTQ  115 (470)
T ss_dssp             ETTTTEE-CCSSCCCTTEE
T ss_pred             ECCCCcc-cccccCCcccc
Confidence            9998875 45666666543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=96.35  E-value=0.024  Score=34.55  Aligned_cols=62  Identities=11%  Similarity=0.247  Sum_probs=43.3

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEeCCCCEEEEeCC
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s~d~~v~iwd~~   69 (89)
                      .+..++++|||+.+++...++.|..|+......  .+......+.+       +++++...++.+..|+..
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~--~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ--IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE--EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE--EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence            478899999999999999999999999764322  22222222222       777777777777777753

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=95.60  E-value=0.048  Score=33.68  Aligned_cols=62  Identities=3%  Similarity=-0.016  Sum_probs=41.9

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec--------cEEEEEeCCCCEEEEeC
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG--------QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~--------~~las~s~d~~v~iwd~   68 (89)
                      .-.+++.++|+..++....+.|.+||.++++....+........+        .++++.+.++.|.-.++
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence            457899999998888888999999999877665555433222221        24555556666665555

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.53  E-value=0.094  Score=31.45  Aligned_cols=64  Identities=14%  Similarity=0.283  Sum_probs=41.8

Q ss_pred             cEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeEeeEecCCc---c--eee--c-cEEEEEeCCCCEEEEeCCC
Q psy12376          6 YIFLLQTSQVGQVLAIGTA-RGNLTVYNHMTSKRVPVLGKHT---N--TIV--G-QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~-~g~v~iwd~~~~~~~~~~~~h~---~--~i~--~-~~las~s~d~~v~iwd~~~   70 (89)
                      ....+++.|+|+.+++-.. ++.|.+|+. +|+.+..+....   .  .|.  . ..|+.++.++.|++|....
T Consensus       201 ~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         201 YPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             SEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             CCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEeee
Confidence            4678999999997777554 446999985 577666653221   1  111  1 3455566788888888754

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=95.51  E-value=0.011  Score=38.99  Aligned_cols=63  Identities=13%  Similarity=0.040  Sum_probs=42.0

Q ss_pred             EEEEEEccCCCEE-EEEeCCCcEEEEeCCCCeEe--------eEecC----Ccceeec------cEEEEEeCCCCEEEEe
Q psy12376          7 IFLLQTSQVGQVL-AIGTARGNLTVYNHMTSKRV--------PVLGK----HTNTIVG------QVLAIGTARGNLTVYN   67 (89)
Q Consensus         7 i~~~~~spdg~~l-a~g~~~g~v~iwd~~~~~~~--------~~~~~----h~~~i~~------~~las~s~d~~v~iwd   67 (89)
                      ...+.+||||+++ +++..+++|.+||....+..        ..+.+    -.+++..      +.+.+...|..|.-|+
T Consensus       260 PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~  339 (441)
T d1qnia2         260 PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWN  339 (441)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEec
Confidence            4578999999976 56677999999997642210        00000    1112222      5788889999999999


Q ss_pred             CC
Q psy12376         68 HM   69 (89)
Q Consensus        68 ~~   69 (89)
                      +.
T Consensus       340 ~~  341 (441)
T d1qnia2         340 IA  341 (441)
T ss_dssp             HH
T ss_pred             cc
Confidence            74

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.35  E-value=0.067  Score=35.94  Aligned_cols=52  Identities=15%  Similarity=0.144  Sum_probs=39.6

Q ss_pred             CcEEEEeCCCCeEeeEecC----Ccceeec--cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         26 GNLTVYNHMTSKRVPVLGK----HTNTIVG--QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        26 g~v~iwd~~~~~~~~~~~~----h~~~i~~--~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      |.+.-+|..+|+.+.+...    ..+.+..  .+++.|+.|+.++.+|.++|+.+-..
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~  501 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEE
Confidence            5788899999988765431    2334443  78888999999999999999988644

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.03  E-value=0.053  Score=36.43  Aligned_cols=52  Identities=17%  Similarity=0.298  Sum_probs=40.0

Q ss_pred             CcEEEEeCCCCeEeeEecCC----cceeec--cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         26 GNLTVYNHMTSKRVPVLGKH----TNTIVG--QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        26 g~v~iwd~~~~~~~~~~~~h----~~~i~~--~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      |.+.-+|+.+|+.+.....+    .+.+..  .++++|+.|+.++.+|.++|+.+...
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~  523 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEE
Confidence            67888999999887765432    122222  78888999999999999999988654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=94.84  E-value=0.056  Score=33.94  Aligned_cols=65  Identities=9%  Similarity=0.010  Sum_probs=41.2

Q ss_pred             EEEEEEccCCCEEEEEeC-CCcEEEEeCC-CCeEee--Ee---cCCcce--eec-----cEEEEEeCCCCEEEEeCCCC
Q psy12376          7 IFLLQTSQVGQVLAIGTA-RGNLTVYNHM-TSKRVP--VL---GKHTNT--IVG-----QVLAIGTARGNLTVYNHMTS   71 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~-~g~v~iwd~~-~~~~~~--~~---~~h~~~--i~~-----~~las~s~d~~v~iwd~~~~   71 (89)
                      +.++.|+|||+++++... ...|.+|+.. +++...  ..   ....++  +..     .+.++...+++|.+|+...+
T Consensus       147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            578999999998877654 4578888754 343321  11   111222  221     35677788999999998654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=94.71  E-value=0.21  Score=30.10  Aligned_cols=72  Identities=15%  Similarity=0.124  Sum_probs=47.8

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEeCCC--CeEeeEec-CCcce---eec----cEEEEEeCCCCEEEEeCCCCEE
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARGNLTVYNHMT--SKRVPVLG-KHTNT---IVG----QVLAIGTARGNLTVYNHMTSKR   73 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g~v~iwd~~~--~~~~~~~~-~h~~~---i~~----~~las~s~d~~v~iwd~~~~~~   73 (89)
                      ...+.+++|+|||+++++...++.+.+++...  +....... .....   +..    +++++-+.++.+..+|..++..
T Consensus        67 ~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~  146 (302)
T d2p4oa1          67 EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG  146 (302)
T ss_dssp             SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcc
Confidence            34578999999999999998888888877543  22211111 11111   111    6788888888888888887654


Q ss_pred             Ee
Q psy12376         74 VP   75 (89)
Q Consensus        74 ~~   75 (89)
                      ..
T Consensus       147 ~~  148 (302)
T d2p4oa1         147 SI  148 (302)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.49  E-value=0.2  Score=28.97  Aligned_cols=35  Identities=20%  Similarity=0.088  Sum_probs=25.3

Q ss_pred             CcEEEEEEccCCCEEEEEeC-C-----CcEEEEeCCCCeEe
Q psy12376          5 YYIFLLQTSQVGQVLAIGTA-R-----GNLTVYNHMTSKRV   39 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~-~-----g~v~iwd~~~~~~~   39 (89)
                      ......+|||||+.||.... +     ..|.+++..+++..
T Consensus        41 ~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2          41 GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             CcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            45778899999999986543 2     24778888777653

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.41  E-value=0.2  Score=33.39  Aligned_cols=52  Identities=19%  Similarity=0.291  Sum_probs=39.7

Q ss_pred             CcEEEEeCCCCeEeeEec--CC--cceeec--cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         26 GNLTVYNHMTSKRVPVLG--KH--TNTIVG--QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        26 g~v~iwd~~~~~~~~~~~--~h--~~~i~~--~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      |.+.-||+.+|+.+....  .+  .+.+..  .+++.|+.|+.++.+|.++|+.+-..
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~  495 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF  495 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEE
Confidence            578889999999876553  11  223332  78889999999999999999988654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.20  E-value=0.24  Score=28.66  Aligned_cols=35  Identities=17%  Similarity=-0.000  Sum_probs=24.6

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCC---cEEEEeCCCCeE
Q psy12376          4 RYYIFLLQTSQVGQVLAIGTARG---NLTVYNHMTSKR   38 (89)
Q Consensus         4 ~~~i~~~~~spdg~~la~g~~~g---~v~iwd~~~~~~   38 (89)
                      ...+..-+|||||+.||-.....   .+.+.+..++..
T Consensus        38 ~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~   75 (269)
T d2hqsa1          38 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV   75 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred             CCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce
Confidence            34567889999999998765544   466666666543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.99  E-value=0.27  Score=28.44  Aligned_cols=69  Identities=10%  Similarity=0.081  Sum_probs=38.6

Q ss_pred             cEEEEEEccCCCEEEEEeCCC---cEEEEeCCCCeEeeEecC-Cc--ceeec---cEEEEEe---CCCCEEEEeCCCCEE
Q psy12376          6 YIFLLQTSQVGQVLAIGTARG---NLTVYNHMTSKRVPVLGK-HT--NTIVG---QVLAIGT---ARGNLTVYNHMTSKR   73 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g---~v~iwd~~~~~~~~~~~~-h~--~~i~~---~~las~s---~d~~v~iwd~~~~~~   73 (89)
                      ......|+|+|+.++..+.++   .+.+.+...+.. ..... ..  .+..+   +.|+-.+   ....|+++++..+..
T Consensus       172 ~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         172 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             cccccccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            356779999999888766544   444455554433 22221 11  12222   4444333   345788999986665


Q ss_pred             Ee
Q psy12376         74 VP   75 (89)
Q Consensus        74 ~~   75 (89)
                      .+
T Consensus       251 ~~  252 (269)
T d2hqsa1         251 AR  252 (269)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.73  E-value=0.26  Score=28.46  Aligned_cols=64  Identities=13%  Similarity=0.085  Sum_probs=40.4

Q ss_pred             EEccC--CCEEEEEeCCCcEEEEeCCCCeEeeEecCCcceeec-------cEEEEEe-CCC-----CEEEEeCCCCEEEe
Q psy12376         11 QTSQV--GQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIVG-------QVLAIGT-ARG-----NLTVYNHMTSKRVP   75 (89)
Q Consensus        11 ~~spd--g~~la~g~~~g~v~iwd~~~~~~~~~~~~h~~~i~~-------~~las~s-~d~-----~v~iwd~~~~~~~~   75 (89)
                      ..|||  |+.+|-.+ +|.|.+.|+.+++. +.+..+.+....       +.||... .++     .|.+++..+++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            46899  99888654 56899999988765 455544333322       5565442 222     37777877776654


Q ss_pred             e
Q psy12376         76 V   76 (89)
Q Consensus        76 ~   76 (89)
                      .
T Consensus        83 l   83 (281)
T d1k32a2          83 I   83 (281)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.56  E-value=0.11  Score=34.73  Aligned_cols=52  Identities=23%  Similarity=0.316  Sum_probs=40.2

Q ss_pred             CcEEEEeCCCCeEeeEecCC----cceeec--cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         26 GNLTVYNHMTSKRVPVLGKH----TNTIVG--QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        26 g~v~iwd~~~~~~~~~~~~h----~~~i~~--~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      |.+.-||..+|+.+......    .+.+..  .++++|+.|+.++.+|.++|+.+-..
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~  514 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA  514 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEE
Confidence            46889999999988765422    223332  78889999999999999999988654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.93  E-value=0.13  Score=34.71  Aligned_cols=52  Identities=19%  Similarity=0.186  Sum_probs=39.8

Q ss_pred             CcEEEEeCCCCeEeeEecC----Ccceeec--cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         26 GNLTVYNHMTSKRVPVLGK----HTNTIVG--QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        26 g~v~iwd~~~~~~~~~~~~----h~~~i~~--~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      |.+.-||..+|+.+.....    ..+.+..  .+++.|+.|+.++.+|.++|+.+-..
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~  510 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKF  510 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEE
Confidence            6788999999988665421    2233333  78888999999999999999988654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=92.54  E-value=0.24  Score=30.91  Aligned_cols=66  Identities=14%  Similarity=0.192  Sum_probs=39.0

Q ss_pred             EEEEEEccCCCEEEEEeC------CCcEEEEeCCC-CeEee--Ee------cCCcceee----c-cE-EEEEeCCCCEEE
Q psy12376          7 IFLLQTSQVGQVLAIGTA------RGNLTVYNHMT-SKRVP--VL------GKHTNTIV----G-QV-LAIGTARGNLTV   65 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~------~g~v~iwd~~~-~~~~~--~~------~~h~~~i~----~-~~-las~s~d~~v~i   65 (89)
                      ...+.++|||++|+++..      .+.|..|+... +....  .+      .++...+.    + ++ +++...++.|.+
T Consensus       257 ~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v  336 (365)
T d1jofa_         257 ADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI  336 (365)
T ss_dssp             EEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred             ccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEE
Confidence            567899999999877632      22377777643 32211  11      11222232    2 54 455578899999


Q ss_pred             EeCCCCE
Q psy12376         66 YNHMTSK   72 (89)
Q Consensus        66 wd~~~~~   72 (89)
                      |+++...
T Consensus       337 ~~~~~~~  343 (365)
T d1jofa_         337 YRWKDEF  343 (365)
T ss_dssp             EEEETTE
T ss_pred             EEEeCCc
Confidence            9986544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.44  E-value=0.32  Score=29.69  Aligned_cols=70  Identities=13%  Similarity=0.091  Sum_probs=44.1

Q ss_pred             EEEEEEccCCCEE-EEEeCCCcEEEEeCCC-CeEee--------EecCCcc--eeec----cEEEEEeCCCCEEEEeCCC
Q psy12376          7 IFLLQTSQVGQVL-AIGTARGNLTVYNHMT-SKRVP--------VLGKHTN--TIVG----QVLAIGTARGNLTVYNHMT   70 (89)
Q Consensus         7 i~~~~~spdg~~l-a~g~~~g~v~iwd~~~-~~~~~--------~~~~h~~--~i~~----~~las~s~d~~v~iwd~~~   70 (89)
                      ...++|+||++.| ++-+..+.|..|+... +....        ...+...  .+..    ++.++...++.|.++|.. 
T Consensus       179 pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~-  257 (319)
T d2dg1a1         179 ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-  257 (319)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-
T ss_pred             eeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC-
Confidence            3569999999865 5556688999998653 22111        1111111  1221    677888889999999974 


Q ss_pred             CEEEeee
Q psy12376         71 SKRVPVL   77 (89)
Q Consensus        71 ~~~~~~l   77 (89)
                      |+.+..+
T Consensus       258 G~~l~~i  264 (319)
T d2dg1a1         258 GYPIGQI  264 (319)
T ss_dssp             SCEEEEE
T ss_pred             CcEEEEE
Confidence            6655443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=92.42  E-value=0.65  Score=30.34  Aligned_cols=60  Identities=13%  Similarity=0.055  Sum_probs=41.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEeeEecC------------------------------Ccceeec-------cEE-EEEeC
Q psy12376         18 VLAIGTARGNLTVYNHMTSKRVPVLGK------------------------------HTNTIVG-------QVL-AIGTA   59 (89)
Q Consensus        18 ~la~g~~~g~v~iwd~~~~~~~~~~~~------------------------------h~~~i~~-------~~l-as~s~   59 (89)
                      .+++|..+|+|.+|++.+++.+..+.-                              |...+.+       ++| ++...
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~   92 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA   92 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence            367888899999999999887665421                              1111111       444 66678


Q ss_pred             CCCEEEEeCCCCEEEeee
Q psy12376         60 RGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        60 d~~v~iwd~~~~~~~~~l   77 (89)
                      ++.|.++|+++.+....+
T Consensus        93 ~~rVavIDl~t~k~~~ii  110 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKIT  110 (441)
T ss_dssp             TTEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEECCCCcEeeEE
Confidence            889999999998776543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.09  E-value=0.53  Score=27.63  Aligned_cols=63  Identities=11%  Similarity=0.010  Sum_probs=39.3

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecCC-cce--eec----cEEEEEeCCCCEEEEeCC
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKH-TNT--IVG----QVLAIGTARGNLTVYNHM   69 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~h-~~~--i~~----~~las~s~d~~v~iwd~~   69 (89)
                      ...++++|+|+.+++...++.|..++............. ..+  |..    +++++...++.|..++..
T Consensus       142 p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~  211 (260)
T d1rwia_         142 PDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  211 (260)
T ss_dssp             CCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTT
T ss_pred             cceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCC
Confidence            568999999998888888899999998754332221111 111  111    455555555666666654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.87  E-value=0.38  Score=31.16  Aligned_cols=69  Identities=10%  Similarity=0.036  Sum_probs=43.9

Q ss_pred             cEEEEEEccCCCEEEEEeC---------CCcEEEEeCCCCeEeeEec--CCcceee----c---cEEEEEeCCCCEEEEe
Q psy12376          6 YIFLLQTSQVGQVLAIGTA---------RGNLTVYNHMTSKRVPVLG--KHTNTIV----G---QVLAIGTARGNLTVYN   67 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~---------~g~v~iwd~~~~~~~~~~~--~h~~~i~----~---~~las~s~d~~v~iwd   67 (89)
                      .+....|||||++++...+         .+.+.++|+.+++......  .....+.    +   +.+|-. .++.|++.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv-~~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI-FENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE-ETTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEE-ecceEEEEe
Confidence            3556789999999887743         5678999998876433211  1122221    1   566665 366788888


Q ss_pred             CCCCEEEe
Q psy12376         68 HMTSKRVP   75 (89)
Q Consensus        68 ~~~~~~~~   75 (89)
                      ..++...+
T Consensus       141 ~~~~~~~~  148 (465)
T d1xfda1         141 HVGKQAIR  148 (465)
T ss_dssp             SSSSCCEE
T ss_pred             cCCCceEE
Confidence            87665443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=90.69  E-value=1.3  Score=29.25  Aligned_cols=61  Identities=13%  Similarity=0.117  Sum_probs=45.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEeeEecCCcc---------------eeec-cEEEEEeCCCCEEEEeCCCCEEEeeeC
Q psy12376         18 VLAIGTARGNLTVYNHMTSKRVPVLGKHTN---------------TIVG-QVLAIGTARGNLTVYNHMTSKRVPVLG   78 (89)
Q Consensus        18 ~la~g~~~g~v~iwd~~~~~~~~~~~~h~~---------------~i~~-~~las~s~d~~v~iwd~~~~~~~~~l~   78 (89)
                      .+..++.++.|.-.|.++|+.+..+.....               ...+ ..+..+..|+.|.-.|..+|+.+....
T Consensus        68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~~~w~~~  144 (560)
T d1kv9a2          68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (560)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence            555677889999999999999887642211               0011 578888999999999999998876553

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.94  E-value=0.94  Score=30.35  Aligned_cols=61  Identities=25%  Similarity=0.301  Sum_probs=44.5

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEeeEecCCc----ceee-----c-cEEEEEeC------CCCEEEEeCCCCEEEeee
Q psy12376         17 QVLAIGTARGNLTVYNHMTSKRVPVLGKHT----NTIV-----G-QVLAIGTA------RGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        17 ~~la~g~~~g~v~iwd~~~~~~~~~~~~h~----~~i~-----~-~~las~s~------d~~v~iwd~~~~~~~~~l   77 (89)
                      ..+..++.|+.|.-.|..+|+.+..+....    ..+.     . ..++.++.      .|.|+-+|.++|+.+-..
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~  198 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRA  198 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEe
Confidence            468888999999999999999887764211    1122     1 55666543      488999999999988654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.91  E-value=1.1  Score=26.23  Aligned_cols=33  Identities=12%  Similarity=0.091  Sum_probs=21.9

Q ss_pred             cCCcEEEEEEccCCCEEEEE-eCCCcEEEEeCCC
Q psy12376          3 LRYYIFLLQTSQVGQVLAIG-TARGNLTVYNHMT   35 (89)
Q Consensus         3 ~~~~i~~~~~spdg~~la~g-~~~g~v~iwd~~~   35 (89)
                      +......++++++|...++. ...+.+..++...
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~   45 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGS   45 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC---
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCC
Confidence            34457899999999966654 4557777776654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=89.91  E-value=1.2  Score=26.95  Aligned_cols=68  Identities=16%  Similarity=0.287  Sum_probs=44.7

Q ss_pred             EEEEEccCCCEEEEEeCC-CcEEEEeCCCCeEeeE--ec----CCcceeec--cEEEEEeCC------CCEEEEeCCCCE
Q psy12376          8 FLLQTSQVGQVLAIGTAR-GNLTVYNHMTSKRVPV--LG----KHTNTIVG--QVLAIGTAR------GNLTVYNHMTSK   72 (89)
Q Consensus         8 ~~~~~spdg~~la~g~~~-g~v~iwd~~~~~~~~~--~~----~h~~~i~~--~~las~s~d------~~v~iwd~~~~~   72 (89)
                      ...++.+||+.++.|..+ ..+.+||..+......  +.    .|...+..  ++++.|+.+      ..+.+||..+++
T Consensus        79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            356788999999988765 4899999987654221  11    12222222  667777643      369999998877


Q ss_pred             EEe
Q psy12376         73 RVP   75 (89)
Q Consensus        73 ~~~   75 (89)
                      ...
T Consensus       159 W~~  161 (387)
T d1k3ia3         159 WTS  161 (387)
T ss_dssp             EEE
T ss_pred             eee
Confidence            654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=89.03  E-value=1.5  Score=26.61  Aligned_cols=67  Identities=12%  Similarity=0.030  Sum_probs=42.1

Q ss_pred             EEEEEEccCCCEEEEEeC-------CCcEEEEeCCCCeEeeEecCCc-------ceeec----cEEEEEeCCCCEEEEeC
Q psy12376          7 IFLLQTSQVGQVLAIGTA-------RGNLTVYNHMTSKRVPVLGKHT-------NTIVG----QVLAIGTARGNLTVYNH   68 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~-------~g~v~iwd~~~~~~~~~~~~h~-------~~i~~----~~las~s~d~~v~iwd~   68 (89)
                      ....+|.|+|+.+++...       +|.|..||..+++.........       ..+..    +.+..+...+.+...|.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            567899999997776433       4679999988775432221111       11211    56666666677888888


Q ss_pred             CCCEE
Q psy12376         69 MTSKR   73 (89)
Q Consensus        69 ~~~~~   73 (89)
                      ..+..
T Consensus       100 ~g~~~  104 (314)
T d1pjxa_         100 DGTFE  104 (314)
T ss_dssp             TSCEE
T ss_pred             CCcEE
Confidence            65544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=87.06  E-value=2.7  Score=27.76  Aligned_cols=60  Identities=13%  Similarity=0.180  Sum_probs=43.7

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEeeEecCCc----------cee-----ec-cEEEEEeCCCCEEEEeCCCCEEEeee
Q psy12376         18 VLAIGTARGNLTVYNHMTSKRVPVLGKHT----------NTI-----VG-QVLAIGTARGNLTVYNHMTSKRVPVL   77 (89)
Q Consensus        18 ~la~g~~~g~v~iwd~~~~~~~~~~~~h~----------~~i-----~~-~~las~s~d~~v~iwd~~~~~~~~~l   77 (89)
                      .+..++.++.|.-+|.++|+.+..+....          ..+     .. ..+..++.|+.+.-.|.++|+.+...
T Consensus        79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~g~l~alda~tG~~~W~~  154 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (573)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEecccceeeeccccccceecc
Confidence            55667788999999999999988764211          011     11 56777889999999999999877543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.88  E-value=1.9  Score=25.37  Aligned_cols=70  Identities=9%  Similarity=0.160  Sum_probs=48.0

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEecC--Ccce---eec----cEEEEEeCCCCEEEEeCCCCEEEee
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGK--HTNT---IVG----QVLAIGTARGNLTVYNHMTSKRVPV   76 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~~--h~~~---i~~----~~las~s~d~~v~iwd~~~~~~~~~   76 (89)
                      ....++..++|..+++....+.+.+++.. ++.+..+..  +...   +..    +++++....+.|++||.. ++.+..
T Consensus       115 ~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~  192 (279)
T d1q7fa_         115 HPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQ  192 (279)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEE
T ss_pred             ccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecC-Cceeee
Confidence            46788999999988888888889888864 555555532  2111   111    677788888899999975 444444


Q ss_pred             e
Q psy12376         77 L   77 (89)
Q Consensus        77 l   77 (89)
                      +
T Consensus       193 ~  193 (279)
T d1q7fa_         193 I  193 (279)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.20  E-value=1  Score=29.12  Aligned_cols=34  Identities=15%  Similarity=0.005  Sum_probs=27.7

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q psy12376          5 YYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKR   38 (89)
Q Consensus         5 ~~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~   38 (89)
                      +..++|+|.|||+.|++--.+|.|++++..+++.
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~   60 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV   60 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcE
Confidence            3568999999999888865679999998877654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=85.38  E-value=2.5  Score=25.45  Aligned_cols=35  Identities=20%  Similarity=0.161  Sum_probs=28.3

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeE
Q psy12376          7 IFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPV   41 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~   41 (89)
                      +..++|.++|+..++-...|.|..|+..+++....
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~   76 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP   76 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEE
Confidence            57899999999878877899999999877654443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=84.16  E-value=4.1  Score=26.90  Aligned_cols=66  Identities=11%  Similarity=-0.014  Sum_probs=45.9

Q ss_pred             EEEccCCCEEEEEeC----------------CCcEEEEeCCCCeEeeEecCCcc----------eeec---------cEE
Q psy12376         10 LQTSQVGQVLAIGTA----------------RGNLTVYNHMTSKRVPVLGKHTN----------TIVG---------QVL   54 (89)
Q Consensus        10 ~~~spdg~~la~g~~----------------~g~v~iwd~~~~~~~~~~~~h~~----------~i~~---------~~l   54 (89)
                      .++.|+...+..++.                ...+.-.|+++|+.+..++....          ++..         ..+
T Consensus       240 ~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v  319 (571)
T d2ad6a1         240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLL  319 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEE
T ss_pred             cccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccce
Confidence            455566666655554                34677889999998877664211          1111         467


Q ss_pred             EEEeCCCCEEEEeCCCCEEEe
Q psy12376         55 AIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus        55 as~s~d~~v~iwd~~~~~~~~   75 (89)
                      +.++.+|.+++.|.++|+.+.
T Consensus       320 ~~~~k~G~l~vlDr~tG~~i~  340 (571)
T d2ad6a1         320 SHIDRNGILYTLNRENGNLIV  340 (571)
T ss_dssp             EEECTTSEEEEEETTTCCEEE
T ss_pred             eeccccceEEEEecCCCcEee
Confidence            889999999999999998764

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.53  E-value=1.2  Score=28.23  Aligned_cols=34  Identities=21%  Similarity=0.292  Sum_probs=26.1

Q ss_pred             EEEEEEccCCCEEEEEeC-CC----cEEEEeCCCCeEee
Q psy12376          7 IFLLQTSQVGQVLAIGTA-RG----NLTVYNHMTSKRVP   40 (89)
Q Consensus         7 i~~~~~spdg~~la~g~~-~g----~v~iwd~~~~~~~~   40 (89)
                      +..+++||||+++|.+-+ .|    .++++|+.+|+.+.
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~  165 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP  165 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecc
Confidence            456789999999986543 33    79999999998654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=81.72  E-value=3.7  Score=24.65  Aligned_cols=66  Identities=20%  Similarity=0.305  Sum_probs=39.3

Q ss_pred             EEEccCCCEEEEEeCCC-----------cEEEEeCCCCeEee--Ee-cCCcc-----eeec--cEEEEEeCC-CCEEEEe
Q psy12376         10 LQTSQVGQVLAIGTARG-----------NLTVYNHMTSKRVP--VL-GKHTN-----TIVG--QVLAIGTAR-GNLTVYN   67 (89)
Q Consensus        10 ~~~spdg~~la~g~~~g-----------~v~iwd~~~~~~~~--~~-~~h~~-----~i~~--~~las~s~d-~~v~iwd   67 (89)
                      .....+|+.++.|+.+.           .+.+||..+++...  .. ..|..     .+..  ++++.|+.+ ..+.+||
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence            34456888888877431           36789998765322  11 12211     1111  677777655 5899999


Q ss_pred             CCCCEEEe
Q psy12376         68 HMTSKRVP   75 (89)
Q Consensus        68 ~~~~~~~~   75 (89)
                      ..++....
T Consensus       105 ~~~~~w~~  112 (387)
T d1k3ia3         105 SSSDSWIP  112 (387)
T ss_dssp             GGGTEEEE
T ss_pred             CccCcccc
Confidence            97766543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=80.78  E-value=3.9  Score=24.33  Aligned_cols=37  Identities=8%  Similarity=0.071  Sum_probs=30.2

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEeeEec
Q psy12376          6 YIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLG   43 (89)
Q Consensus         6 ~i~~~~~spdg~~la~g~~~g~v~iwd~~~~~~~~~~~   43 (89)
                      ..-.+++.++|+..++....|.|.+||. .|+.+..+.
T Consensus       200 ~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~  236 (295)
T d2ghsa1         200 GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE  236 (295)
T ss_dssp             EEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred             cccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEec
Confidence            3568899999998888888899999996 577777664

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.36  E-value=5.9  Score=26.08  Aligned_cols=59  Identities=19%  Similarity=0.200  Sum_probs=43.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEeeEecCCc--------cee-----ec-cEEEEEeCCCCEEEEeCCCCEEEe
Q psy12376         17 QVLAIGTARGNLTVYNHMTSKRVPVLGKHT--------NTI-----VG-QVLAIGTARGNLTVYNHMTSKRVP   75 (89)
Q Consensus        17 ~~la~g~~~g~v~iwd~~~~~~~~~~~~h~--------~~i-----~~-~~las~s~d~~v~iwd~~~~~~~~   75 (89)
                      ..+.+++.++.|.-.|..+|+.+..+....        ..+     .. ..++.++.|+.+.--|.++|+...
T Consensus        69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t~~~~l~alda~tG~~~W  141 (582)
T d1flga_          69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVW  141 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEE
T ss_pred             CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEecCCCeEEEecccccceee
Confidence            366677889999999999999987753210        011     11 567778899999999999887763