Psyllid ID: psy12424

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
IGGYSLVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGLAWIIGKVTPGDRSVIIKDSPDIFHVTLIR
ccccEEEcccccccEEEEEccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccEEEcccEEcccccEEcEEEEEEEEccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccEEEEEcccccccccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHcccccEEEEEEEccccEEEEccccEEEEEccc
ccccEEEccccccccEEEEcccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHEcccccccHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccEEEEEEEEEEcHHHEEcccccccccEEEEEccHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHccccccccccccccccccccccEEEEccHHHHHHHHHHHccccEEEEEEEcccccEEEEcccEEEEEEEEc
IGGYSLVRIEIGLdsciiplasgrspsplyliqstdffyplvthphimGAIACANVLSDIYAVGVTDIDALQMIVGIStqltederdIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVcsseefvmpnqaqpgdviiltkplgtqMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNahactdvtgygltghaTNLVKYQTNSVnfmihtlpilyplgviasrpgtrfyqnvnrghgietsgglficlpedHAKDFIKEMNGLAWIIgkvtpgdrsviikdspdifhvtlir
IGGYSLVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGLAWIIGKvtpgdrsviikdspdifhvtlir
IGGYSLVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGLAWIIGKVTPGDRSVIIKDSPDIFHVTLIR
***YSLVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGLAWIIGKVTPGDRSVIIKDSPDIFHVTL**
*GGYSLVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGLAWIIGKVTPGDRSVIIKDSPDIFHVTLI*
IGGYSLVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGLAWIIGKVTPGDRSVIIKDSPDIFHVTLIR
*GGYSLVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGLAWIIGKVTPGDRSVIIKDSPDIFHVTLIR
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IGGYSLVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGLAWIIGKVTPGDRSVIIKDSPDIFHVTLIR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query324 2.2.26 [Sep-21-2011]
Q6PF47392 Selenide, water dikinase N/A N/A 0.959 0.793 0.452 4e-78
Q6GL12392 Selenide, water dikinase yes N/A 0.959 0.793 0.452 4e-78
Q8BH69392 Selenide, water dikinase yes N/A 0.959 0.793 0.449 5e-78
Q0VC82392 Selenide, water dikinase yes N/A 0.959 0.793 0.449 9e-78
Q5RF87392 Selenide, water dikinase yes N/A 0.959 0.793 0.449 9e-78
P49903392 Selenide, water dikinase yes N/A 0.959 0.793 0.449 9e-78
O18373398 Selenide, water dikinase yes N/A 0.944 0.768 0.447 3e-77
Q7ZW38392 Selenide, water dikinase no N/A 0.959 0.793 0.443 8e-77
P97364452 Selenide, water dikinase no N/A 0.956 0.685 0.44 4e-76
A1YIZ1451 Selenide, water dikinase yes N/A 0.932 0.669 0.454 6e-76
>sp|Q6PF47|SPS1_XENLA Selenide, water dikinase 1 OS=Xenopus laevis GN=sephs1 PE=2 SV=1 Back     alignment and function desciption
 Score =  291 bits (746), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 147/325 (45%), Positives = 208/325 (64%), Gaps = 14/325 (4%)

Query: 3   GYSLVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYA 62
           G  + R+ IG+D+C+IPL  G     L L+Q+TD+ YP+V  P++MG IACANVLSD+YA
Sbjct: 58  GAVMPRLGIGMDTCVIPLRHGG----LSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYA 113

Query: 63  VGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIG 122
           +GVT+ D + M++G+S +LT+ ERD ++P++I+GFK  A  AG +++     LNPW+ +G
Sbjct: 114 MGVTECDNMLMLLGVSNKLTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWVVLG 173

Query: 123 GVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAM 182
           GV T+VC   EF+MP+ A PGDV++LTKPLGTQ++V +  WL   EK + +K + V    
Sbjct: 174 GVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLV-VTQED 232

Query: 183 LKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHT 242
           ++     A+  MA +N+ AA LM  +NAHA TD+TG+G+ GHA NL K Q N V+F+IH 
Sbjct: 233 VELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHN 292

Query: 243 LPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG-------L 295
           LP+L  +  ++   G  F   +  G   ETSGGL ICLP + A  F  E+          
Sbjct: 293 LPVLAKMAAVSKACGNMF--GLMHGSCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQ 350

Query: 296 AWIIGKVTPGDRSVIIKDSPDIFHV 320
           AWIIG V  G+R+  I D P I  V
Sbjct: 351 AWIIGIVEKGNRTARIIDKPRIIEV 375
Synthesizes selenophosphate from selenide and ATP.
Xenopus laevis (taxid: 8355)
EC: 2EC: .EC: 7EC: .EC: 9EC: .EC: 3
>sp|Q6GL12|SPS1_XENTR Selenide, water dikinase 1 OS=Xenopus tropicalis GN=sephs1 PE=2 SV=1 Back     alignment and function description
>sp|Q8BH69|SPS1_MOUSE Selenide, water dikinase 1 OS=Mus musculus GN=Sephs1 PE=2 SV=1 Back     alignment and function description
>sp|Q0VC82|SPS1_BOVIN Selenide, water dikinase 1 OS=Bos taurus GN=SEPHS1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RF87|SPS1_PONAB Selenide, water dikinase 1 OS=Pongo abelii GN=SEPHS1 PE=2 SV=1 Back     alignment and function description
>sp|P49903|SPS1_HUMAN Selenide, water dikinase 1 OS=Homo sapiens GN=SEPHS1 PE=1 SV=2 Back     alignment and function description
>sp|O18373|SPS1_DROME Selenide, water dikinase OS=Drosophila melanogaster GN=SelD PE=1 SV=1 Back     alignment and function description
>sp|Q7ZW38|SPS1_DANRE Selenide, water dikinase 1 OS=Danio rerio GN=sephs1 PE=1 SV=2 Back     alignment and function description
>sp|P97364|SPS2_MOUSE Selenide, water dikinase 2 OS=Mus musculus GN=Sephs2 PE=1 SV=3 Back     alignment and function description
>sp|A1YIZ1|SPS2_PIG Selenide, water dikinase 2 OS=Sus scrofa GN=SEPHS2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query324
307174035324 Selenide, water dikinase [Camponotus flo 0.944 0.944 0.473 1e-78
328786961413 PREDICTED: LOW QUALITY PROTEIN: selenide 0.944 0.740 0.466 3e-78
350426205413 PREDICTED: LOW QUALITY PROTEIN: selenide 0.944 0.740 0.466 3e-78
340722126413 PREDICTED: LOW QUALITY PROTEIN: selenide 0.944 0.740 0.463 5e-78
112983862402 selenophosphate synthetase 1 [Bombyx mor 0.944 0.761 0.463 6e-78
357618535384 selenophosphate synthetase 1 [Danaus ple 0.944 0.796 0.463 9e-78
237636936401 selenophosphate synthetase 1 [Heliothis 0.944 0.763 0.460 2e-77
332030379403 Selenide, water dikinase [Acromyrmex ech 0.944 0.759 0.466 2e-77
307205975315 Selenide, water dikinase [Harpegnathos s 0.929 0.955 0.467 4e-77
193652783410 PREDICTED: selenide, water dikinase-like 0.953 0.753 0.443 5e-77
>gi|307174035|gb|EFN64738.1| Selenide, water dikinase [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 150/317 (47%), Positives = 207/317 (65%), Gaps = 11/317 (3%)

Query: 8   RIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTD 67
           RI IG+DS + P+  G     L L+Q+TDFFYPLV  P++MG IACANVLSD+YA+GVTD
Sbjct: 5   RIGIGMDSSVTPVRHG----GLSLVQTTDFFYPLVDDPYMMGKIACANVLSDLYAMGVTD 60

Query: 68  IDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTS 127
            D + M++G+ST++TE ERD++VP+++ GFK  A  AG  ++     +NPW TIGGV T+
Sbjct: 61  CDNMLMLLGVSTKMTEKERDVVVPLIMRGFKDSALEAGTTVTGGQTVVNPWCTIGGVATT 120

Query: 128 VCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQCV 187
           VC   E+++P+ A  GDV++LTKPLGTQ++V    WL   ++ + +K + V    +++  
Sbjct: 121 VCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPDRWNRIKLV-VSEEDVRKGY 179

Query: 188 NSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILY 247
             A+  MA +N+ AA LM KYNAH  TDVTG+GL GHA NL K+Q N V+F+IH LP++ 
Sbjct: 180 QRAMDSMARLNRTAARLMHKYNAHGATDVTGFGLLGHAQNLAKHQKNEVSFVIHNLPVIS 239

Query: 248 PLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHA----KDFIKEMNGLAWIIGKVT 303
            +  +A   G  F   + +GH  ETSGGL ICLP + A    KD  K+    AWIIG V 
Sbjct: 240 KMAAVAKACGNMF--QLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVE 297

Query: 304 PGDRSVIIKDSPDIFHV 320
            G R+  I D P +  V
Sbjct: 298 KGLRTARIIDKPRVIEV 314

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328786961|ref|XP_003250866.1| PREDICTED: LOW QUALITY PROTEIN: selenide, water dikinase [Apis mellifera] gi|380015611|ref|XP_003691793.1| PREDICTED: LOW QUALITY PROTEIN: selenide, water dikinase-like [Apis florea] gi|383860524|ref|XP_003705739.1| PREDICTED: LOW QUALITY PROTEIN: selenide, water dikinase-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|350426205|ref|XP_003494366.1| PREDICTED: LOW QUALITY PROTEIN: selenide, water dikinase-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340722126|ref|XP_003399460.1| PREDICTED: LOW QUALITY PROTEIN: selenide, water dikinase-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|112983862|ref|NP_001037388.1| selenophosphate synthetase 1 [Bombyx mori] gi|76496248|gb|ABA43640.1| selenophosphate synthetase [Bombyx mori] Back     alignment and taxonomy information
>gi|357618535|gb|EHJ71480.1| selenophosphate synthetase 1 [Danaus plexippus] Back     alignment and taxonomy information
>gi|237636936|gb|ACR07790.1| selenophosphate synthetase 1 [Heliothis virescens] Back     alignment and taxonomy information
>gi|332030379|gb|EGI70086.1| Selenide, water dikinase [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307205975|gb|EFN84101.1| Selenide, water dikinase [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|193652783|ref|XP_001947297.1| PREDICTED: selenide, water dikinase-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query324
FB|FBgn0261270398 SelD "Selenide,water dikinase" 0.953 0.776 0.443 4.1e-72
MGI|MGI:1923580392 Sephs1 "selenophosphate synthe 0.959 0.793 0.449 4.1e-72
UNIPROTKB|F1PFD8392 SEPHS1 "Uncharacterized protei 0.959 0.793 0.452 5.3e-72
RGD|1311182392 Sephs1 "selenophosphate synthe 0.959 0.793 0.449 5.3e-72
UNIPROTKB|F1N876393 SEPHS1 "Uncharacterized protei 0.959 0.791 0.449 6.7e-72
UNIPROTKB|Q0VC82392 SEPHS1 "Selenide, water dikina 0.959 0.793 0.449 6.7e-72
UNIPROTKB|P49903392 SEPHS1 "Selenide, water dikina 0.959 0.793 0.449 6.7e-72
ZFIN|ZDB-GENE-030131-3670392 sephs1 "selenophosphate synthe 0.959 0.793 0.443 6.1e-71
UNIPROTKB|B4DWK0325 SEPHS1 "cDNA FLJ60186, highly 0.929 0.926 0.450 4.3e-70
UNIPROTKB|A1YIZ1451 SEPHS2 "Selenide, water dikina 0.932 0.669 0.454 5.5e-70
FB|FBgn0261270 SelD "Selenide,water dikinase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 142/320 (44%), Positives = 207/320 (64%)

Query:     5 SLVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVG 64
             ++ RI IGLD  +IPL  G     L L+Q+TDFFYP+V  P++MG IACANVLSD+YA+G
Sbjct:    82 AIPRIGIGLDCSVIPLRHGG----LCLVQTTDFFYPIVDDPYMMGKIACANVLSDLYAMG 137

Query:    65 VTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGV 124
             VTD D + M++ +ST++TE ERD+++P+++ GFK  A  AG  ++     +NPW TIGGV
Sbjct:   138 VTDCDNMLMLLAVSTKMTEKERDVVIPLIMRGFKDSALEAGTTVTGGQSVVNPWCTIGGV 197

Query:   125 VTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLK 184
              +++C   E+++P+ A  GDV++LTKPLGTQ++V    W+   E+ + +K + V    ++
Sbjct:   198 ASTICQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWIDQPERWNRIKLV-VSEEDVR 256

Query:   185 QCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLP 244
             +  + A+  MA +N+ AA LM KYNAH  TD+TG+GL GHA  L  +Q   V+F+IH LP
Sbjct:   257 KAYHRAMNSMARLNRVAARLMHKYNAHGATDITGFGLLGHAQTLAAHQKKDVSFVIHNLP 316

Query:   245 ILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHA----KDFIKEMNGLAWIIG 300
             ++  +  +A   G  F   + +GH  ETSGGL ICLP + A    KD  K+    AWIIG
Sbjct:   317 VIAKMAAVAKACGNMF--QLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIG 374

Query:   301 KVTPGDRSVIIKDSPDIFHV 320
              V  G+++  I D P +  V
Sbjct:   375 IVEKGNKTARIIDKPRVIEV 394
GO:0004756 "selenide, water dikinase activity" evidence=IDA;TAS
GO:0007444 "imaginal disc development" evidence=IMP
GO:0016260 "selenocysteine biosynthetic process" evidence=IMP;TAS
GO:0008283 "cell proliferation" evidence=IMP
GO:0005524 "ATP binding" evidence=IEA
GO:0006541 "glutamine metabolic process" evidence=IMP
GO:2000378 "negative regulation of reactive oxygen species metabolic process" evidence=IMP
GO:0007005 "mitochondrion organization" evidence=IMP
GO:0008284 "positive regulation of cell proliferation" evidence=IMP
GO:0022008 "neurogenesis" evidence=IMP
MGI|MGI:1923580 Sephs1 "selenophosphate synthetase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PFD8 SEPHS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1311182 Sephs1 "selenophosphate synthetase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1N876 SEPHS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VC82 SEPHS1 "Selenide, water dikinase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P49903 SEPHS1 "Selenide, water dikinase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3670 sephs1 "selenophosphate synthetase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B4DWK0 SEPHS1 "cDNA FLJ60186, highly similar to Selenide, water dikinase 1 (EC 2.7.9.3)" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A1YIZ1 SEPHS2 "Selenide, water dikinase 2" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8BH69SPS1_MOUSE2, ., 7, ., 9, ., 30.44920.95980.7933yesN/A
O18373SPS1_DROME2, ., 7, ., 9, ., 30.44790.94440.7688yesN/A
Q6GL12SPS1_XENTR2, ., 7, ., 9, ., 30.45230.95980.7933yesN/A
O62461SELD_CAEEL2, ., 7, ., 9, ., 30.43460.88270.7566yesN/A
A7MNU8SELD_CROS82, ., 7, ., 9, ., 30.30450.66040.6167yesN/A
B8ES21SELD_METSB2, ., 7, ., 9, ., 30.29390.86720.8074yesN/A
P49903SPS1_HUMAN2, ., 7, ., 9, ., 30.44920.95980.7933yesN/A
P60819SELD_METJA2, ., 7, ., 9, ., 30.32740.79930.7421yesN/A
Q94497SELD_DICDI2, ., 7, ., 9, ., 30.42520.88580.7884yesN/A
Q5RF87SPS1_PONAB2, ., 7, ., 9, ., 30.44920.95980.7933yesN/A
B2V0F0SELD_CLOBA2, ., 7, ., 9, ., 30.30290.80240.7536yesN/A
A1YIZ1SPS2_PIG2, ., 7, ., 9, ., 30.45420.93200.6696yesN/A
C4ZDB0SELD_EUBR32, ., 7, ., 9, ., 30.27050.84870.8040yesN/A
Q9PMF9SELD_CAMJE2, ., 7, ., 9, ., 30.30030.82710.7882yesN/A
Q0VC82SPS1_BOVIN2, ., 7, ., 9, ., 30.44920.95980.7933yesN/A
Q8TVM0SELD_METKA2, ., 7, ., 9, ., 30.32870.77460.7514yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.90.766
3rd Layer2.7.9.30.824

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query324
cd02195287 cd02195, SelD, Selenophosphate synthetase (SelD) c 6e-70
TIGR00476347 TIGR00476, selD, selenium donor protein 2e-66
PRK14105345 PRK14105, PRK14105, selenophosphate synthetase; Pr 1e-50
COG0709346 COG0709, SelD, Selenophosphate synthase [Amino aci 6e-24
PRK00943347 PRK00943, PRK00943, selenophosphate synthetase; Pr 7e-20
pfam02769150 pfam02769, AIRS_C, AIR synthase related protein, C 7e-14
pfam0058696 pfam00586, AIRS, AIR synthase related protein, N-t 1e-05
COG0309339 COG0309, HypE, Hydrogenase maturation factor [Post 2e-04
cd02194291 cd02194, ThiL, ThiL (Thiamine-monophosphate kinase 0.002
TIGR01379317 TIGR01379, thiL, thiamine-monophosphate kinase 0.004
cd00396222 cd00396, PurM-like, AIR (aminoimidazole ribonucleo 0.004
>gnl|CDD|100031 cd02195, SelD, Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes Back     alignment and domain information 
 Score =  218 bits (559), Expect = 6e-70
 Identities = 91/300 (30%), Positives = 139/300 (46%), Gaps = 50/300 (16%)

Query: 6   LVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGV 65
           LV +  G D+ +  L  G +     L+Q+TDFF P+V  P++ G IA AN LSDIYA+G 
Sbjct: 35  LVGLGTGDDAAVYRLPGGLA-----LVQTTDFFPPIVDDPYLFGRIAAANALSDIYAMGA 89

Query: 66  TDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVV 125
             + AL  IV +  +L    ++ ++  ++ G K +   AG  +        P    G  V
Sbjct: 90  KPLSAL-AIVTLPRKL-PALQEEVLREILAGGKDKLREAGAVLVGGHTIEGPEPKYGLSV 147

Query: 126 TSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQ 185
           T +    + +  + A+PGDV+ILTKPLGT +            +                
Sbjct: 148 TGLVHPNKILRNSGAKPGDVLILTKPLGTGILFAAEMAGLARGED--------------- 192

Query: 186 CVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPI 245
            +++A+  MA +N+ AA L++KY AHACTDVTG+GL GH   + +    S    +  LP+
Sbjct: 193 -IDAALESMARLNRAAAELLRKYGAHACTDVTGFGLLGHLLEMARASGVSAEIDLDKLPL 251

Query: 246 LYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEM---NGLAWIIGKV 302
           L                        +TSGGL   +P + A   +  +      A IIG+V
Sbjct: 252 L------------------------QTSGGLLAAVPPEDAAALLALLKAGGPPAAIIGEV 287

The N-terminal domain of SelD is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, and FGAM synthase and is thought to bind ATP. Length = 287
>gnl|CDD|232993 TIGR00476, selD, selenium donor protein Back     alignment and domain information
>gnl|CDD|237611 PRK14105, PRK14105, selenophosphate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|223781 COG0709, SelD, Selenophosphate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|234870 PRK00943, PRK00943, selenophosphate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|217219 pfam02769, AIRS_C, AIR synthase related protein, C-terminal domain Back     alignment and domain information
>gnl|CDD|216008 pfam00586, AIRS, AIR synthase related protein, N-terminal domain Back     alignment and domain information
>gnl|CDD|223386 COG0309, HypE, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|100030 cd02194, ThiL, ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine Back     alignment and domain information
>gnl|CDD|233387 TIGR01379, thiL, thiamine-monophosphate kinase Back     alignment and domain information
>gnl|CDD|100027 cd00396, PurM-like, AIR (aminoimidazole ribonucleotide) synthase related protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 324
PRK14105345 selenophosphate synthetase; Provisional 100.0
COG0611317 ThiL Thiamine monophosphate kinase [Coenzyme metab 100.0
PRK00943347 selenophosphate synthetase; Provisional 100.0
TIGR00476347 selD selenium donor protein. In prokaryotes, the i 100.0
KOG3939|consensus312 100.0
cd02195287 SelD Selenophosphate synthetase (SelD) catalyzes t 100.0
PRK05731318 thiamine monophosphate kinase; Provisional 100.0
TIGR01379317 thiL thiamine-monophosphate kinase. Proteins scori 100.0
TIGR02124320 hypE hydrogenase expression/formation protein HypE 100.0
cd02197293 HypE HypE (Hydrogenase expression/formation protei 100.0
cd02194291 ThiL ThiL (Thiamine-monophosphate kinase) plays a 100.0
cd06061298 PurM-like1 AIR synthase (PurM) related protein, su 100.0
cd02691346 PurM-like2 AIR synthase (PurM) related protein, ar 100.0
TIGR03267323 methan_mark_2 putative methanogenesis marker prote 100.0
TIGR00878332 purM phosphoribosylaminoimidazole synthetase. This 100.0
PRK05385327 phosphoribosylaminoimidazole synthetase; Provision 100.0
cd02196297 PurM PurM (Aminoimidazole Ribonucleotide [AIR] syn 100.0
COG0309339 HypE Hydrogenase maturation factor [Posttranslatio 100.0
cd02192283 PurM-like3 AIR synthase (PurM) related protein, su 100.0
PLN02557379 phosphoribosylformylglycinamidine cyclo-ligase 100.0
cd00396222 PurM-like AIR (aminoimidazole ribonucleotide) synt 100.0
cd02204264 PurL_repeat2 PurL subunit of the formylglycinamide 100.0
cd02203313 PurL_repeat1 PurL subunit of the formylglycinamide 100.0
PRK14090 601 phosphoribosylformylglycinamidine synthase II; Pro 100.0
COG0709346 SelD Selenophosphate synthase [Amino acid transpor 100.0
TIGR01736715 FGAM_synth_II phosphoribosylformylglycinamidine sy 100.0
PRK01213724 phosphoribosylformylglycinamidine synthase II; Pro 100.0
TIGR01736 715 FGAM_synth_II phosphoribosylformylglycinamidine sy 100.0
PRK01213 724 phosphoribosylformylglycinamidine synthase II; Pro 100.0
cd02193272 PurL Formylglycinamide ribonucleotide amidotransfe 100.0
COG2144324 Selenophosphate synthetase-related proteins [Gener 100.0
COG0150345 PurM Phosphoribosylaminoimidazole (AIR) synthetase 100.0
COG0046743 PurL Phosphoribosylformylglycinamidine (FGAM) synt 99.96
COG1973449 HypE Hydrogenase maturation factor [Posttranslatio 99.94
KOG0237|consensus788 99.93
COG0046 743 PurL Phosphoribosylformylglycinamidine (FGAM) synt 99.93
TIGR01739 1202 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM 99.93
PHA03366 1304 FGAM-synthase; Provisional 99.93
TIGR01735 1310 FGAM_synt phosphoribosylformylglycinamidine syntha 99.92
TIGR01735 1310 FGAM_synt phosphoribosylformylglycinamidine syntha 99.92
PRK05297 1290 phosphoribosylformylglycinamidine synthase; Provis 99.91
PLN03206 1307 phosphoribosylformylglycinamidine synthase; Provis 99.9
PRK05297 1290 phosphoribosylformylglycinamidine synthase; Provis 99.9
PF0058696 AIRS: AIR synthase related protein, N-terminal dom 99.87
TIGR01857 1239 FGAM-synthase phosphoribosylformylglycinamidine sy 99.85
PRK14090601 phosphoribosylformylglycinamidine synthase II; Pro 99.76
PF02769153 AIRS_C: AIR synthase related protein, C-terminal d 99.75
TIGR01857 1239 FGAM-synthase phosphoribosylformylglycinamidine sy 99.74
PLN03206 1307 phosphoribosylformylglycinamidine synthase; Provis 99.71
KOG1907|consensus 1320 99.09
TIGR01739 1202 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM 98.34
KOG1907|consensus 1320 97.98
PHA03366 1304 FGAM-synthase; Provisional 97.32
PF12818282 Tegument_dsDNA: dsDNA viral tegument protein; Inte 93.26
>PRK14105 selenophosphate synthetase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.5e-52  Score=395.14  Aligned_cols=291  Identities=31%  Similarity=0.508  Sum_probs=231.3

Q ss_pred             CCCCCCCeeEEeCCCCCCCCCceEEEeecCCCCccCChhhHHHHHHHHhhhHHHhcCcc-hhhhhHhhhhcCCCCChhHH
Q psy12424          8 RIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVT-DIDALQMIVGISTQLTEDER   86 (324)
Q Consensus         8 ~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~~~p~~~G~~av~~~~sDi~a~Ga~-P~~~~l~~l~~p~~~~~~~~   86 (324)
                      .+++|||||+++.+      +..+++|||+|.|.+.+||++||+|+++|+|||+||||+ |.++ +..+++|+.++.   
T Consensus        43 ~~g~gDDaAvi~~~------~~~lv~t~D~f~~~~~~p~~~G~~av~~nlSDiaAmGa~~p~~~-~~~l~lP~~~~~---  112 (345)
T PRK14105         43 KVGLGDDAAVIIKN------GLAIVKTVDVFTPIVDDPYIQGKIAACNSTSDVYAMGLSEIIGV-LVILGIPPELPI---  112 (345)
T ss_pred             ccCCCCceEEEeeC------CeEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHHcCCccHHHH-HhhhcCCCCCCH---
Confidence            46899999999875      368999999999988999999999999999999999997 8887 466899987776   


Q ss_pred             hhHHHHHHHHHHHHHHHhCCeeeCccccccCCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHHHHHhhhh
Q psy12424         87 DIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKN  166 (324)
Q Consensus        87 ~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~~~~~~~~  166 (324)
                       ++++++++|+.++|++||++|+||||..++++.++++++|..++++++.|++++|||.|++||++|.+... ++..+..
T Consensus       113 -~~l~~i~~Gi~~~~~~~gv~lvGGdT~~~~~~~l~~svtg~g~~~~~i~r~ga~~GD~I~vTg~lG~~~~~-~l~~l~~  190 (345)
T PRK14105        113 -EVAKEMLQGFQDFCRENDTTIIGGHTILNPWPLIGGAVTGVGKEEDILTKAGAKEGDVLILTKPLGTQSAM-ALSRVPE  190 (345)
T ss_pred             -HHHHHHHHHHHHHHHHhCCEEEeeeeccCCCCEEEEEEEEEEcccceeeCCCCCCCCEEEEeCCChHHHHH-HHHhcch
Confidence             69999999999999999999999999999988888888888877788999999999999999999986532 2222210


Q ss_pred             hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccCeEeeccCCccccchhHHhhhhCCCeEEEE
Q psy12424        167 EEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKK-------YNAHACTDVTGYGLTGHATNLVKYQTNSVNFM  239 (324)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~  239 (324)
                        .+.+.. . ++.+...+......+.+.+++.+....++.       ..+|+|||||||||+++|+||+++|+++++|+
T Consensus       191 --~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~DiSdgGL~~~L~ela~aS~v~i~i~  266 (345)
T PRK14105        191 --EFEDLI-D-ITKEEKEYIINKAIELMTTSNRYALLALREAEEEVGEKIANAMTDVTGFGILGHSQEMAEQSNVEIEIS  266 (345)
T ss_pred             --hhhhhc-c-CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccccCCeeEEEcCCCchHHHHHHHHHhhCCCeEEEE
Confidence              111000 0 333333333333455555665543323322       24899999999999999999999999988775


Q ss_pred             ecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEec-CCCcEEEecCC
Q psy12424        240 IHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTP-GDRSVIIKDSP  315 (324)
Q Consensus       240 ~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~-~~~~~~l~~~~  315 (324)
                        +||+++.+.++++.++.    .+++|++|+|+|+|||++|+++++++++.+++   ++++||+|++ +.+...+..+.
T Consensus       267 --~iPi~~~~~~~~~~~~~----~l~~g~~~~ssGgLl~tv~~e~~~~~~~~l~~~g~~~~~IG~V~~~g~~~~~~~~~~  340 (345)
T PRK14105        267 --TLPVIKGTPELSSLFGH----ALLDGYGAETAGGLLISVKPEYKDKLIDKLEKNNVYAFEVGKVVKNGVGKAKLSENV  340 (345)
T ss_pred             --ccCCchhHHHHHHHhcc----cccCCCCCcccCeEEEEecHHHHHHHHHHHHhCCCCceEEEEEEeCCCceEEEcCCC
Confidence              89999999998886542    35689999999999999999999999999887   7999999976 54455566677


Q ss_pred             ceEee
Q psy12424        316 DIFHV  320 (324)
Q Consensus       316 ~~~~~  320 (324)
                      +.+||
T Consensus       341 ~~~~~  345 (345)
T PRK14105        341 KILEI  345 (345)
T ss_pred             ceeeC
Confidence            77765

>COG0611 ThiL Thiamine monophosphate kinase [Coenzyme metabolism] Back     alignment and domain information
>PRK00943 selenophosphate synthetase; Provisional Back     alignment and domain information
>TIGR00476 selD selenium donor protein Back     alignment and domain information
>KOG3939|consensus Back     alignment and domain information
>cd02195 SelD Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes Back     alignment and domain information
>PRK05731 thiamine monophosphate kinase; Provisional Back     alignment and domain information
>TIGR01379 thiL thiamine-monophosphate kinase Back     alignment and domain information
>TIGR02124 hypE hydrogenase expression/formation protein HypE Back     alignment and domain information
>cd02197 HypE HypE (Hydrogenase expression/formation protein) Back     alignment and domain information
>cd02194 ThiL ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine Back     alignment and domain information
>cd06061 PurM-like1 AIR synthase (PurM) related protein, subgroup 1 of unknown function Back     alignment and domain information
>cd02691 PurM-like2 AIR synthase (PurM) related protein, archaeal subgroup 2 of unknown function Back     alignment and domain information
>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2 Back     alignment and domain information
>TIGR00878 purM phosphoribosylaminoimidazole synthetase Back     alignment and domain information
>PRK05385 phosphoribosylaminoimidazole synthetase; Provisional Back     alignment and domain information
>cd02196 PurM PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis Back     alignment and domain information
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02192 PurM-like3 AIR synthase (PurM) related protein, subgroup 3 of unknown function Back     alignment and domain information
>PLN02557 phosphoribosylformylglycinamidine cyclo-ligase Back     alignment and domain information
>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein Back     alignment and domain information
>cd02204 PurL_repeat2 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat Back     alignment and domain information
>cd02203 PurL_repeat1 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat Back     alignment and domain information
>PRK14090 phosphoribosylformylglycinamidine synthase II; Provisional Back     alignment and domain information
>COG0709 SelD Selenophosphate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II Back     alignment and domain information
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional Back     alignment and domain information
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II Back     alignment and domain information
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional Back     alignment and domain information
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway Back     alignment and domain information
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only] Back     alignment and domain information
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism] Back     alignment and domain information
>COG1973 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0237|consensus Back     alignment and domain information
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase Back     alignment and domain information
>PHA03366 FGAM-synthase; Provisional Back     alignment and domain information
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form Back     alignment and domain information
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form Back     alignment and domain information
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional Back     alignment and domain information
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional Back     alignment and domain information
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional Back     alignment and domain information
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP Back     alignment and domain information
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II Back     alignment and domain information
>PRK14090 phosphoribosylformylglycinamidine synthase II; Provisional Back     alignment and domain information
>PF02769 AIRS_C: AIR synthase related protein, C-terminal domain; InterPro: IPR010918 This entry includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP Back     alignment and domain information
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II Back     alignment and domain information
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional Back     alignment and domain information
>KOG1907|consensus Back     alignment and domain information
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase Back     alignment and domain information
>KOG1907|consensus Back     alignment and domain information
>PHA03366 FGAM-synthase; Provisional Back     alignment and domain information
>PF12818 Tegument_dsDNA: dsDNA viral tegument protein; InterPro: IPR024346 This entry represents the N-terminal domain of tegument proteins from double-stranded DNA herpesvirus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query324
3fd5_A394 Crystal Structure Of Human Selenophosphate Syntheta 6e-79
2zau_A311 Crystal Structure Of An N-Terminally Truncated Sele 3e-20
2yye_A345 Crystal Structure Of Selenophosphate Synthetase Fro 3e-20
3u0o_A347 The Crystal Structure Of Selenophosphate Synthetase 3e-13
>pdb|3FD5|A Chain A, Crystal Structure Of Human Selenophosphate Synthetase 1 Complex With Ampcp Length = 394 Back     alignment and structure 
Iteration: 1

 Score =  290 bits (743), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 146/325 (44%), Positives = 208/325 (64%), Gaps = 14/325 (4%)
Query: 3   GYSLVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYA 62
           G  + R+ IG+D+C+IPL  G     L L+Q+TD+ YP+V  P++MG IACANVLSD+YA
Sbjct: 60  GAVMPRLGIGMDTCVIPLRHGG----LSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYA 115
Query: 63  VGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIG 122
           +GVT+ D + M++G+S ++T+ ERD ++P++I+GFK  A  AG +++     LNPW+ +G
Sbjct: 116 MGVTECDNMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLG 175
Query: 123 GVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAM 182
           GV T+VC   EF+MP+ A PGDV++LTKPLGTQ++V +  WL   EK + +K + V    
Sbjct: 176 GVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLV-VTQED 234
Query: 183 LKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHT 242
           ++     A+  MA +N+ AA LM  +NAHA TD+TG+G+ GHA NL K Q N V+F+IH 
Sbjct: 235 VELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHN 294
Query: 243 LPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG-------L 295
           LP+L  +  ++   G  F   +  G   ETSGGL ICLP + A  F  E+          
Sbjct: 295 LPVLAKMAAVSKACGNMF--GLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQ 352
Query: 296 AWIIGKVTPGDRSVIIKDSPDIFHV 320
           AWIIG V  G+R+  I D P I  V
Sbjct: 353 AWIIGIVEKGNRTARIIDKPRIIEV 377
>pdb|2ZAU|A Chain A, Crystal Structure Of An N-Terminally Truncated Selenophosphate Synthetase From Aquifex Aeolicus Length = 311 Back     alignment and structure
>pdb|2YYE|A Chain A, Crystal Structure Of Selenophosphate Synthetase From Aquifex Aeolicus Complexed With Ampcpp Length = 345 Back     alignment and structure
>pdb|3U0O|A Chain A, The Crystal Structure Of Selenophosphate Synthetase From E. Coli Length = 347 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query324
3fd5_A394 Selenide, water dikinase 1; selenophosphate synthe 2e-86
2yyd_A345 Selenide, water dikinase; FULL-length selenophosph 8e-72
3u0o_A347 Selenide, water dikinase; ATP binding protein, sel 1e-67
2z1e_A338 Hydrogenase expression/formation protein HYPE; [NI 7e-28
2z1u_A343 Hydrogenase expression/formation protein HYPE; alp 4e-12
3vti_C314 Hydrogenase maturation factor; transferase, carbam 5e-11
2rb9_A334 HYPE protein; hydrogenase maturation, dimer, enzym 1e-09
>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD, ATP-binding, nucleotide-binding, selenium, transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A* Length = 394 Back     alignment and structure
 Score =  264 bits (676), Expect = 2e-86
 Identities = 146/326 (44%), Positives = 207/326 (63%), Gaps = 14/326 (4%)

Query: 3   GYSLVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYA 62
           G  + R+ IG+D+C+IPL  G     L L+Q+TD+ YP+V  P++MG IACANVLSD+YA
Sbjct: 60  GAVMPRLGIGMDTCVIPLRHGG----LSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYA 115

Query: 63  VGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIG 122
           +GVT+ D + M++G+S ++T+ ERD ++P++I+GFK  A  AG +++     LNPW+ +G
Sbjct: 116 MGVTECDNMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLG 175

Query: 123 GVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAM 182
           GV T+VC   EF+MP+ A PGDV++LTKPLGTQ++V +  WL   EK + +K   V    
Sbjct: 176 GVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKL-VVTQED 234

Query: 183 LKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHT 242
           ++     A+  MA +N+ AA LM  +NAHA TD+TG+G+ GHA NL K Q N V+F+IH 
Sbjct: 235 VELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHN 294

Query: 243 LPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGL------- 295
           LP+L  +  ++   G  F   +  G   ETSGGL ICLP + A  F  E+          
Sbjct: 295 LPVLAKMAAVSKACGNMF--GLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQ 352

Query: 296 AWIIGKVTPGDRSVIIKDSPDIFHVT 321
           AWIIG V  G+R+  I D P I  V 
Sbjct: 353 AWIIGIVEKGNRTARIIDKPRIIEVA 378
>3u0o_A Selenide, water dikinase; ATP binding protein, selenophosphate synthesis, transferase; 2.25A {Escherichia coli} Length = 347 Back     alignment and structure
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase maturation, ATPase, transferase; 1.55A {Thermococcus kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A Length = 338 Back     alignment and structure
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio vulgaris subsp} PDB: 2z1t_A* Length = 343 Back     alignment and structure
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer, maturation of [NIFE]-hydroge nitrIle synthesis, iron; 2.56A {Thermoanaerobacter tengcongensis} Length = 314 Back     alignment and structure
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY crystallography, structural genomics, BSGI; 2.00A {Escherichia coli O157} PDB: 2i6r_A Length = 334 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query324
3fd5_A394 Selenide, water dikinase 1; selenophosphate synthe 100.0
2zod_A345 Selenide, water dikinase; FULL-length selenophosph 100.0
2yyd_A345 Selenide, water dikinase; FULL-length selenophosph 100.0
3u0o_A347 Selenide, water dikinase; ATP binding protein, sel 100.0
3mcq_A319 Thiamine-monophosphate kinase; structural genomics 100.0
3vti_C314 Hydrogenase maturation factor; transferase, carbam 100.0
2rb9_A334 HYPE protein; hydrogenase maturation, dimer, enzym 100.0
2z1u_A343 Hydrogenase expression/formation protein HYPE; alp 100.0
3c9u_A342 Thiamine monophosphate kinase; beta barrel, alpha- 100.0
2yxz_A311 Thiamin-monophosphate kinase; alpha/beta structure 100.0
3p4e_A349 Phosphoribosylformylglycinamidine cyclo-ligase; st 100.0
3m84_A350 Phosphoribosylformylglycinamidine cyclo-ligase; al 100.0
2z1e_A338 Hydrogenase expression/formation protein HYPE; [NI 100.0
2z01_A348 Phosphoribosylformylglycinamidine cyclo-ligase; al 100.0
2btu_A346 Phosphoribosyl-aminoimidazole synthetase; synthase 100.0
2v9y_A334 Phosphoribosylformylglycinamidine cyclo-ligase; mu 100.0
3ac6_A 725 Phosphoribosylformylglycinamidine synthase 2; puri 100.0
1vk3_A 615 Phosphoribosylformylglycinamidine synthase II; TM1 100.0
3ac6_A725 Phosphoribosylformylglycinamidine synthase 2; puri 100.0
3mdo_A389 Putative phosphoribosylformylglycinamidine cyclo-; 100.0
3kiz_A394 Phosphoribosylformylglycinamidine cyclo-ligase; ST 100.0
3ugj_A 1303 Phosphoribosylformylglycinamidine synthase; amidot 99.97
1vk3_A615 Phosphoribosylformylglycinamidine synthase II; TM1 99.96
3ugj_A 1303 Phosphoribosylformylglycinamidine synthase; amidot 99.91
>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD, ATP-binding, nucleotide-binding, selenium, transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A* Back     alignment and structure
Probab=100.00  E-value=1.9e-60  Score=454.27  Aligned_cols=310  Identities=47%  Similarity=0.854  Sum_probs=260.4

Q ss_pred             CCCCCCCCCeeEEeCCCCCCCCCceEEEeecCCCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhH
Q psy12424          6 LVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDE   85 (324)
Q Consensus         6 ~~~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~   85 (324)
                      .|.+++||||||++++++    +..|++|||+|+|.+.+||++||+|+++|+|||+||||+|++++++++++|+.+++++
T Consensus        63 ~~~l~~GdDaAV~~~~~~----~~~lv~ttD~f~p~~~dP~~~G~~Ava~~lsDiaAmGA~P~~~~l~~l~~p~~~~~~~  138 (394)
T 3fd5_A           63 MPRLGIGMDTCVIPLRHG----GLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRE  138 (394)
T ss_dssp             CCCBCTTSSSEEEECSST----TCEEEEEEEEECCCSSCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEEEEEETTSCHHH
T ss_pred             cccccCCCCeeEEecCCC----CcEEEEEeeccCCcCCCHHHHHHHHHHHHHHHHHHCCchhHHHHhhhEecCCCCChhH
Confidence            466899999999999742    4689999999988889999999999999999999999999975467889998888765


Q ss_pred             HhhHHHHHHHHHHHHHHHhCCeeeCccccccCCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHHHHHhhh
Q psy12424         86 RDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLK  165 (324)
Q Consensus        86 ~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~~~~~~~  165 (324)
                      .+++++++++||+++|+++|++|+||||..+|++.+++|++|.+++++++++++++|||.|++||++|.+....+++++.
T Consensus       139 ~~~~l~~i~~Gi~~~~~~~gv~lvGGdT~~~p~~~i~~t~~G~v~~~~~l~~~~a~~GD~Iiltg~lG~~~~~~~~~~l~  218 (394)
T 3fd5_A          139 RDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLD  218 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCEEEEEEEEESSCEEEEEEEEEECGGGCCCTTCCCTTCEEEESSCBCHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcEEeeeEEEcCCcEEEEEEEEEEcCCceecCCCCCCCCEEEEECCccHHHHHHHHHHhh
Confidence            66799999999999999999999999999999999999999999888899999999999999999999987655554433


Q ss_pred             hhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCC
Q psy12424        166 NEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPI  245 (324)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~  245 (324)
                      ..++|..+... ++++.+.+.+....+.|.++++.++.+++++++|||||||+|||+++|+||+++|++|++|+++++|+
T Consensus       219 ~~~~~~~l~~~-~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~v~A~~DvT~gGL~~~L~ema~aSgvg~~I~~~~iPi  297 (394)
T 3fd5_A          219 IPEKWNKIKLV-VTQEDVELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPV  297 (394)
T ss_dssp             ----------C-CCHHHHHHHHHHHHHHHHSCSHHHHHHHHHTTCCEEEECCTTHHHHHHHHHHTTCSSSEEEEEEEEEE
T ss_pred             ccchhhhhhcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEeCCCcHHHHHHHHHHHhcCCcEEEEeccCCC
Confidence            22233322222 56655555555555666667666667777888999999999999999999999999999999999999


Q ss_pred             ChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc-------ccceEEEEecCCCcEEEecCCceE
Q psy12424        246 LYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG-------LAWIIGKVTPGDRSVIIKDSPDIF  318 (324)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~-------~~~~IG~V~~~~~~~~l~~~~~~~  318 (324)
                      ++.+.++|+.+++.|.  +++|+||||+|+||++|++++++++++.+++       ++++||+|+++++.+++..+++++
T Consensus       298 ~~~~~~~~~~~~~~~~--l~~g~d~etsGgLL~~v~~~~~~~~~~~l~~~~~~~g~~a~~IG~V~~~~~~~~l~~~g~~i  375 (394)
T 3fd5_A          298 LAKMAAVSKACGNMFG--LMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRII  375 (394)
T ss_dssp             ETTHHHHHHHTTTSSC--GGGTCCCCSSCCEEEEECHHHHHHHHHHHHCC---CCCCCEEEEEEEESSSCEEEEEEEEEE
T ss_pred             CHHHHHHHHhcchhhh--hhcccCcccCCcEEEEECHHHHHHHHHHHHhccccCCCCEEEEEEEEeCCceEEEEECCEEE
Confidence            9999999988775444  7789999999999999999999999998863       689999999987777888899998


Q ss_pred             eecc
Q psy12424        319 HVTL  322 (324)
Q Consensus       319 ~~~~  322 (324)
                      +++.
T Consensus       376 ~~~~  379 (394)
T 3fd5_A          376 EVAP  379 (394)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            8863
>2zod_A Selenide, water dikinase; FULL-length selenophosphate synthetase, transferase, ATP- binding, magnesium, nucleotide-binding, selenium; 1.98A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 2yye_A 2zau_A Back     alignment and structure
>3u0o_A Selenide, water dikinase; ATP binding protein, selenophosphate synthesis, transferase; 2.25A {Escherichia coli} Back     alignment and structure
>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus flagellatus} Back     alignment and structure
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer, maturation of [NIFE]-hydroge nitrIle synthesis, iron; 2.56A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY crystallography, structural genomics, BSGI; 2.00A {Escherichia coli O157} PDB: 2i6r_A Back     alignment and structure
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio vulgaris subsp} PDB: 2z1t_A* Back     alignment and structure
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure, transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A* 1vqv_A Back     alignment and structure
>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase; 1.90A {Thermus thermophilus} Back     alignment and structure
>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae} PDB: 1cli_A Back     alignment and structure
>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold, csgid, ATP-binding, nucleotide-BIND purine biosynthesis; HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp} PDB: 3qty_A* Back     alignment and structure
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase maturation, ATPase, transferase; 1.55A {Thermococcus kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A Back     alignment and structure
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta proteins, cytoplasm, purine biosynthesis, structural genomics, NPPSFA; 2.20A {Geobacillus kaustophilus} Back     alignment and structure
>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo purine biosynthesis, AIR synthase family, spine, FGAR amidotransferase; 2.31A {Bacillus anthracis} Back     alignment and structure
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional enzyme, structural genomics consortium, nucleotide-binding, purine biosynthesis; 2.10A {Homo sapiens} Back     alignment and structure
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A* Back     alignment and structure
>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural genomics, joint center for structural genomics; HET: MSE PGE P6G PG4; 1.91A {Parabacteroides distasonis} Back     alignment and structure
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A* Back     alignment and structure
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A* Back     alignment and structure
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 324
d2z1ea2179 d.139.1.1 (A:156-334) Hydrogenase expression/forma 1e-12
d2zoda2182 d.139.1.1 (A:155-336) Selenide, water dikinase Sel 4e-11
d2zoda1152 d.79.4.1 (A:3-154) Selenide, water dikinase SelD { 5e-11
d2z1ea1113 d.79.4.1 (A:43-155) Hydrogenase expression/formati 5e-04
d3c9ua2163 d.139.1.1 (A:138-300) Thiamine monophosphate kinas 0.002
>d2z1ea2 d.139.1.1 (A:156-334) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]} Length = 179 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PurM C-terminal domain-like
superfamily: PurM C-terminal domain-like
family: PurM C-terminal domain-like
domain: Hydrogenase expression/formation protein HypE
species: Thermococcus kodakaraensis [TaxId: 311400]

 Score = 63.0 bits (152), Expect = 1e-12
 Identities = 26/182 (14%), Positives = 63/182 (34%), Gaps = 27/182 (14%)

Query: 140 AQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINK 199
           A+ GD ++++  +G    + + S  +                  +  + S +  +  + K
Sbjct: 6   AKVGDAVLVSGTIGDH-GIALMSHREGIA--------------FETELKSDVAPIWDVVK 50

Query: 200 KAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTR 259
             A  +   N HA  D T  GL+     + +     +      +PI   +          
Sbjct: 51  AVAETIGWENIHAMKDPTRAGLSNALNEIARKSNVGILVREADIPIRPEV-------RAA 103

Query: 260 FYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGL-----AWIIGKVTPGDRSVIIKDS 314
                   + +   G + + +  ++A++ ++ M        A IIG+V    R  ++ ++
Sbjct: 104 SEMLGISPYDVANEGKVVMVVAREYAEEALEAMRKTEKGRNAAIIGEVIADYRGKVLLET 163

Query: 315 PD 316
             
Sbjct: 164 GI 165
>d2zoda2 d.139.1.1 (A:155-336) Selenide, water dikinase SelD {Aquifex aeolicus [TaxId: 63363]} Length = 182 Back     information, alignment and structure
>d2zoda1 d.79.4.1 (A:3-154) Selenide, water dikinase SelD {Aquifex aeolicus [TaxId: 63363]} Length = 152 Back     information, alignment and structure
>d2z1ea1 d.79.4.1 (A:43-155) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]} Length = 113 Back     information, alignment and structure
>d3c9ua2 d.139.1.1 (A:138-300) Thiamine monophosphate kinase (ThiL) C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 163 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query324
d2zoda1152 Selenide, water dikinase SelD {Aquifex aeolicus [T 99.95
d3c9ua1137 Thiamine monophosphate kinase (ThiL) N-terminal do 99.93
d3c9ua2163 Thiamine monophosphate kinase (ThiL) C-terminal do 99.92
d2z1ea1113 Hydrogenase expression/formation protein HypE {The 99.91
d2z1ea2179 Hydrogenase expression/formation protein HypE {The 99.9
d2zoda2182 Selenide, water dikinase SelD {Aquifex aeolicus [T 99.87
d1vk3a2162 Phosphoribosylformylglycinamidine synthase II, dom 99.84
d1vk3a3179 Phosphoribosylformylglycinamidine synthase II, dom 99.79
d1clia1166 Aminoimidazole ribonucleotide synthetase (PurM) N- 99.77
d1t3ta6187 FGAM synthase PurL, PurM-like module, C1 and C2 do 99.47
d1vk3a1165 Phosphoribosylformylglycinamidine synthase II, dom 99.43
d1clia2175 Aminoimidazole ribonucleotide synthetase (PurM) C- 99.42
d1t3ta5200 FGAM synthase PurL, PurM-like module, N1 and N2 do 99.27
d1t3ta7217 FGAM synthase PurL, PurM-like module, C1 and C2 do 99.23
d1t3ta4209 FGAM synthase PurL, PurM-like module, N1 and N2 do 97.15
>d2zoda1 d.79.4.1 (A:3-154) Selenide, water dikinase SelD {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: PurM N-terminal domain-like
family: PurM N-terminal domain-like
domain: Selenide, water dikinase SelD
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.95  E-value=3.3e-29  Score=205.54  Aligned_cols=114  Identities=25%  Similarity=0.339  Sum_probs=98.8

Q ss_pred             CCCCCCeeEEeCCCCCCCCCceEEEeecCCCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCC-CChhHHh
Q psy12424          9 IEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQ-LTEDERD   87 (324)
Q Consensus         9 ~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~-~~~~~~~   87 (324)
                      +++|||||+++.++      ..+|+|||++.+.+++||++||+++++|+|||+||||+|++++ ..+.+|++ .+.    
T Consensus        37 ~g~gDDaAvi~~~~------~~lv~s~D~~~~~v~~p~~~G~~av~~~lSDIaAmGa~P~~~l-~~l~lp~~~~~~----  105 (152)
T d2zoda1          37 VSIGDDAGVYEHNG------IIWVYTVDIITPVVNDPYLWGAISTANALSDVYAMGGIPVNAL-AISCFNNCELDI----  105 (152)
T ss_dssp             -----CCCEEEETT------EEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHTTCEEEEEE-EEEEECTTTCCH----
T ss_pred             ccCCCcccccccCC------cEEEEEeccccCcccCHHHHHHHHHHhhHhhHHhcCCceeeee-eecccCccccCH----
Confidence            58899999999764      6899999999999999999999999999999999999999874 55788854 444    


Q ss_pred             hHHHHHHHHHHHHHHHhCCeeeCccccccCCceEeEEEEEeeeCCc
Q psy12424         88 IIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEE  133 (324)
Q Consensus        88 ~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~~i~~t~iG~~~~~~  133 (324)
                      ++++++++||+++|++||++|+||||..++++++++|++|.+++++
T Consensus       106 ~~l~~i~~Gi~~~~~~~g~~lvGGdt~~~~~~~i~~tv~G~v~~~k  151 (152)
T d2zoda1         106 EIFREVIRGALDKLREAKTVLLGGHTIDDKEPKFGLSVAGICPEGK  151 (152)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEEEEEECSSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHHhhcCCeEEeeeecCCCCcEEEEEEEEEeCCCc
Confidence            6899999999999999999999999999999999999999998654
>d3c9ua1 d.79.4.1 (A:1-137) Thiamine monophosphate kinase (ThiL) N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3c9ua2 d.139.1.1 (A:138-300) Thiamine monophosphate kinase (ThiL) C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2z1ea1 d.79.4.1 (A:43-155) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d2z1ea2 d.139.1.1 (A:156-334) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d2zoda2 d.139.1.1 (A:155-336) Selenide, water dikinase SelD {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1vk3a2 d.79.4.1 (A:346-507) Phosphoribosylformylglycinamidine synthase II, domains 1 and 3 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vk3a3 d.139.1.1 (A:167-345) Phosphoribosylformylglycinamidine synthase II, domains 2 and 4 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1clia1 d.79.4.1 (A:5-170) Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t3ta6 d.139.1.1 (A:430-616) FGAM synthase PurL, PurM-like module, C1 and C2 domains {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1vk3a1 d.79.4.1 (A:2-166) Phosphoribosylformylglycinamidine synthase II, domains 1 and 3 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1clia2 d.139.1.1 (A:171-345) Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t3ta5 d.79.4.1 (A:617-816) FGAM synthase PurL, PurM-like module, N1 and N2 domains {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1t3ta7 d.139.1.1 (A:817-1033) FGAM synthase PurL, PurM-like module, C1 and C2 domains {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1t3ta4 d.79.4.1 (A:221-429) FGAM synthase PurL, PurM-like module, N1 and N2 domains {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure